LOCUS       DANLVT010000001        67747 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.001, whole genome shotgun sequence.
ACCESSION   DANLVT010000001 DANLVT010000000
VERSION     DANLVT010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 67747)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 67747)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..67747
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.001"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            275..1633
                     /locus_tag="PXC99_000001"
     CDS             275..1633
                     /locus_tag="PXC99_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit A"
                     /protein_id="HDL5416509.1"
                     /translation="MITIKKGLDLPIAGKPEQVIHNGNTVTEVAMLGEEYVGMRPSMK
                     VREGDVVKKGQVLFEDKKNPGVIFTAPASGTVTAINRGEKRVLQSVVIKVEGDEQITF
                     ARYEASQLASLTSEQVKQNLVESGLWTAFRTRPFSKVPALDAEPSSIFVNAMDTNPLA
                     ANPEVIIAEHQQAFFDGLTVLSRLFESKKVIHLCGSADSNILNAAQSRQINNVETNRF
                     KGPHPAGLSGTHIHFIDPVGATKQVWYLNYQDVIAIGKLFTTGELFTDRVVALAGPQV
                     KNPRLVRTRLGANLSQLTANELNAGENRVISGSVLSGAIATGVHDYLGRYALQVSALL
                     EGREKAFFGMIAPYSDKYSITRTTLGHFAKKLFNFTTAVHGSERAMVPTGAYERVMPL
                     DIIPTLLLRDLAAGDTDSAQALGCLELDEEDLALCTFVCSGKNNWGPLLRQALDKIEK
                     DG"
     gene            1636..2871
                     /locus_tag="PXC99_000002"
     CDS             1636..2871
                     /locus_tag="PXC99_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit B"
                     /protein_id="HDL5416510.1"
                     /translation="MGLKNLFEKMEPAFHKGGKYEKWYTLFEAAYTIFYTPGTVTRKD
                     AHVRDAIDSKRMMLIVWLALFPAMFYGMYNVGAQGILAALKMGTLTDLVANNWHYSLA
                     DSLGSVADAGWGTKMLLGATYFLPIYLTVFAVGGFWEVVFAMVRKHEINEGFFVTSIL
                     LALIVPPTLPLWQAALATTFGVVVAKEVFGGVGKNFMNPALAGRAFLFFAYPGQISGD
                     AVWVAADGFSGATALSQWAVGGQGALQHVATGETITWMDAFLGNIPGSIGETSTLMLI
                     IGAAIIVFARIASWRIIAGVMIGMAATATLFNVIGSDTNPLFSMPWHWHLVLGGFAIG
                     MFFMATDPVSAAFTNKGKWAYGILIGFMCVLIRVVNPAYPEGMMLAILFANLFAPIFD
                     YLVVQGNIKRRLARVANNG"
     gene            2864..3637
                     /locus_tag="PXC99_000003"
     CDS             2864..3637
                     /locus_tag="PXC99_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit C"
                     /protein_id="HDL5416511.1"
                     /translation="MAKFNKDSVGGTLTVVVLLSLICSLIVAGAAVMLKPTQDIQKQL
                     DKQKNILQAAGLLQKDTNVQETYTKFIEPKIVDLATGDYVEGVTGFDARAAAKDPAQN
                     VVIAPEDDKANIKTRAKYAEVYLVKDESGKTTQVVLPMHGNGLWSIMYGFVAVQPDAN
                     TVNGITYYEQGETAGLGGEIANPNWQKNFVGKKLYNEQNQVALRVGKGASADKDHGVD
                     GLSGATLTSNGVDGSFKYWFGQNGFGPYLAKFKAAAGAN"
     gene            3637..4263
                     /locus_tag="PXC99_000004"
     CDS             3637..4263
                     /locus_tag="PXC99_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005717817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit D"
                     /protein_id="HDL5416512.1"
                     /translation="MADNNNLKKLLLSPIVDNNPIALQILGICSALAVTTQLQTAVVM
                     AIAVSLVTAFSSMFISMIRNYIPNSIRIIVQMAIIASLVILVDQILRAYAYDLSKQLS
                     VFVGLIITNCIVMGRAEAFAMKSGPVESFVDGIGNGLGYGAMLIIVAFLRELIGSGKI
                     FGITILETVQNGGWYQANGLFLLAPSAFFIIGFVIWAIRTWKPEQVEK"
     gene            4265..4861
                     /gene="nqrE"
                     /locus_tag="PXC99_000005"
     CDS             4265..4861
                     /gene="nqrE"
                     /locus_tag="PXC99_000005"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005529392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit E"
                     /protein_id="HDL5416513.1"
                     /translation="MEHLLSIFVKSIFIENMALSFFLGMCTFLAVSKKVSTAFGLGIA
                     VIVVLGIAVPANQLVYTHVLKEGALVEGVDLSFLNFITFIGVIAALVQILEMILDKFF
                     PALYSALGIFLPLITVNCAIFGGVSFMVQREYNFVESVVYGVGAGTGWMLAIVALAGL
                     TEKMKYSDVPAGLRGLGITFITVGLMALGFMSFSGIQL"
     gene            4872..6101
                     /gene="nqrF"
                     /locus_tag="PXC99_000006"
     CDS             4872..6101
                     /gene="nqrF"
                     /locus_tag="PXC99_000006"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit F"
                     /protein_id="HDL5416514.1"
                     /translation="MDSNFIFGIIAFTALVLVLAVIILFAKSKLVDSGDITISINNDP
                     EKGITLPAGGKLLGALASKGIFVSSACGGGGSCGQCKVQVKSGGGEILPTELSHISKK
                     EAKEGWRLACQVNVKSSMDVELPEEIFGVKKWECTVISNDNKATFIKELKLQIPEGEE
                     VPFRAGGYIQIEAEPHTVHYKDFDIPKEYHEDWDKFDLWRYTSKVDEHIIRAYSMASY
                     PEEKGIIMLNVRIATPPPRNPDVPPGQMSSYIWSLKPGDKVTISGPFGEFFAKDTDAE
                     MVFIGGGAGMAPMRSHIFDQLKRLKSKRKMSFWYGARSEREMFYVEDFDGLQAENDNF
                     KWYVALSDPLPGDREDYFRGFIHNVLYENYLKNHEAPEDCEYYMCGPPVMNAAVIGML
                     KSLGVEDENILLDDFGG"
     gene            6213..6647
                     /locus_tag="PXC99_000007"
     CDS             6213..6647
                     /locus_tag="PXC99_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase substrate binding
                     protein"
                     /protein_id="HDL5416515.1"
                     /translation="MEQLDITVLENAFNSLEKTIVSLENQAWFNRQEAIIQDTLIAGA
                     IQKFEFVYELSIKMLKRQLKNIESNDTDIDSTEFRDILRMAAQYGLIESPEVWLDYRK
                     MRNITSHTYDQNKAQQVYNGISNFLESTYFLVKQLQKRNSYD"
     gene            6640..6933
                     /locus_tag="PXC99_000008"
     CDS             6640..6933
                     /locus_tag="PXC99_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HDL5416516.1"
                     /translation="MIDLTESQRQQVLDIFKKYLPDTPVWVFGSRIKGTAKAYSDLDL
                     ALITKQPLTIRQQTELELAFTDSDLPFTVDLIDWASCNESFKQIILQRYEVLI"
     gene            6982..8016
                     /locus_tag="PXC99_000009"
     CDS             6982..8016
                     /locus_tag="PXC99_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HDL5416517.1"
                     /translation="MKKFFLLLIAFFTLSACEKAPEQITLSGKTMGTTYTVKYIDNGE
                     VENLISPEKMKNELDGLLIEVNNQMSTYQQDSEISRFNQAKQANQAVEISQDFAKVVQ
                     EAIRLNKVTEGALDVTVGPLVNLWGFGPDKRLNKVPSDEQIAERSAYVGIDKILLEMS
                     SKPKLTKSAANLYLDLSSIAKGFGVDKLAEHLETIGVSNYLVEIGGELRGKGKNLQGL
                     DWRIAIEKPVMTQGQAAQITVPLHNLAMATSGNYRNYFEDEKGNRLSHIIDPKQLRPV
                     NHNLASITVFAPTTMTADGLSTGLFVLGAEKALAVAEREKLAIFLIVKNGDKFETQMS
                     SEFSKLIQSQ"
     gene            8029..8274
                     /gene="nqrM"
                     /locus_tag="PXC99_000010"
     CDS             8029..8274
                     /gene="nqrM"
                     /locus_tag="PXC99_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Na+)-NQR maturation NqrM"
                     /protein_id="HDL5416518.1"
                     /translation="METVLLTFGFFVAVIFAMSIGFIVKGKTIKGSCGGITALGMKKM
                     CDCEEPCDNLKSKIADGTADPEEVARFNKEPQFYEVK"
     gene            8276..8692
                     /locus_tag="PXC99_000011"
     CDS             8276..8692
                     /locus_tag="PXC99_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase substrate binding
                     protein"
                     /protein_id="HDL5416519.1"
                     /translation="MNRDIRWKQRFDNYKKSVSYLQAEAEKYADTDIDVIKKGIIQSF
                     EITHELAWKLMQDILKWEGEVDIYGSKTASRLAFNRGLITQGEVWLEMIKSRNITVHT
                     DDETILTEEFNKIIKAYLPLFIEFEQRVETLCQTLD"
     gene            8674..8985
                     /locus_tag="PXC99_000012"
     CDS             8674..8985
                     /locus_tag="PXC99_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HDL5416520.1"
                     /translation="MPNFGLSERATKTITDILAKYPEVEQAIIYGSRAKGNYREGSDV
                     DLTFKGKDLTYDIVKRIWGDLDDSDSPYLFDLSIYHQLTNANFIEHIDRVGKVFYQRE
                     L"
     gene            9096..10259
                     /gene="mnmA"
                     /locus_tag="PXC99_000013"
     CDS             9096..10259
                     /gene="mnmA"
                     /locus_tag="PXC99_000013"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HDL5416521.1"
                     /translation="MTTQLTSKTYDTHFPKLTPEQLAENSKKKVIIGMSGGVDSSVSA
                     FILQQQGYQVEGLFMKNWEEDDDTDYCTAAAELADAQAVADKLGMKLHKINFAAEYWD
                     NVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADYIATGHYVRRTSDDQD
                     AKLLRGLDENKDQSYFLYALNKKQIGQSLFPVGEIEKPIVRAIAEDLGLATAKKKDST
                     GICFIGERKFKDFLARFLPAQPGEIRTVEGKLVGRHDGLMYHTLGQRKGLGIGGVKGL
                     SEDPFYVVEKDLINNVLIVAQGHDNSALLSSGLIAKQLTWVDMQPLRENLRCTVKTRY
                     RQADIACEIQVIDDETIRVMFDEPQIAVTPGQSAVFYLGEVCLGGGIIESQLK"
     gene            10376..11755
                     /gene="argH"
                     /locus_tag="PXC99_000014"
     CDS             10376..11755
                     /gene="argH"
                     /locus_tag="PXC99_000014"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HDL5416522.1"
                     /translation="MALWGGRFTQQADAKFKYFNDSLRFDYRLAIQDIEGSIGWAKAI
                     TSVGILTVAELEQLIAALKEVRAEVESNLTIILKDDAEDIHSWVESKLIEKVGDLGKK
                     LHTGRSRNDQVAVDIKMWCKVQAVALQERIRALQERLVSVAEENQESVMPGYTHLQRA
                     QPVTFAHWCMAYYEMLERDFSRLSDANKRMSTCPLGSGALAGTAYGIDRDLLARDLGF
                     EEATRNSLDSVSDRDHILELLSTASISMMHLSRFAEDLIIFNSGESGFLEMSDRVTSG
                     SSLMPQKKNPDACELIRGKSGRVFGALNGLLTTLKGLPLAYNKDMQEDKEGIFDALET
                     WQACLEIAELVLVDIQVNTERTREAAQQGYANATELADYLVAKGVPFREAHHIVGEAV
                     VYAISKKEPLEALSINEFQQFHHSIGDDVYPILSLESCLEKRCAKGGVNPQRVAEAIA
                     VAKANLASK"
     gene            11923..12921
                     /locus_tag="PXC99_000015"
     CDS             11923..12921
                     /locus_tag="PXC99_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4115 domain-containing protein"
                     /protein_id="HDL5416523.1"
                     /translation="MTESVNSTQAGTALSLGQQLKAAREALNLSITDVAQKTNLKKSH
                     IESLENDIFILQNVAPTFVRGYVRNYVKFLRLPESLISSVNYGEVTIPKEVTKVSSVK
                     PSSNSQGKTLKYLTVLVLLAALGMTLLWWWQGYQKEQENREQFVSSAPVAEVANTATN
                     NDASAQTSVPVQQPIQVSEQPAQVAETVVAAEPALTEKVEPTQAASSPVTQEDVKVVE
                     EVKQADATTAQVEAVNVLQQSQSEQAPTEQPVAVTNDELRIEITGSQSWITVRGAKNK
                     RLAEKLYNNGETLSFNENEQYRLTIGAPANVKVYYKGQEVPLKIDGRVARIHLPLQ"
     gene            13022..14134
                     /gene="ispG"
                     /locus_tag="PXC99_000016"
                     /gene_synonym="gcpE"
     CDS             13022..14134
                     /gene="ispG"
                     /locus_tag="PXC99_000016"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HDL5416524.1"
                     /translation="MIHQSPIKRRVSKKIYVGNVPVGGDAPITVQSMTNTRTTDVEAT
                     VAQIKSLERVGADIVRVSVPTMDAAEAFKAIKQQVSVPLVADIHFDYRIALKVAEYGV
                     DCLRINPGNIGNEERIRTVVDCARDKNIPIRIGVNAGSLERDLQEKYGEPTPQALLES
                     ALRHVDHLDRLNFDQFKVSVKASDVFLAVESYRLLAKQIDQPLHLGITEAGGARAGSV
                     KSAVGLGLLLAEGIGDTLRVSLAADPVEEVKVGFDILKSLRIRSRGINFIACPTCSRQ
                     EIDVIATVNELEQRLEDIITPMDVSIIGCVVNGPGEALVSDLGVTGSNKMSGFYLDGV
                     RQKERFDNAKLIDQLEAKIRARVAQQHNRIDIEQIG"
     gene            14140..15411
                     /gene="hisS"
                     /locus_tag="PXC99_000017"
     CDS             14140..15411
                     /gene="hisS"
                     /locus_tag="PXC99_000017"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HDL5416525.1"
                     /translation="MAKTIQAIRGMNDCSPSESPLWQWVEQKVRNVLASYGYSEVRMP
                     IVESTPLFARAIGEVTDVVSKEMYTFWDNDEQLTLRPEGTAGCVRAAIERGWIYNNEQ
                     RLWYMGPMFRHERPQKGRYRQFHQAGVEVFGIANPEIDAELIILTARLWKELGIDQHV
                     SLQLNSIGSLEARANYRSALVKFLENHTALMNEEEKERLVKNPLRILDTKNEALQNVL
                     NDAPKLLDYLDDDSREHFTQLCALLDAMGIRYEVNPKLVRGLDYYNKTVFEWVTSALG
                     SQGTVCGGGRYDGLVEQLGGHATQGVGFAMGLERLVLLVQEVNKEIDLPKTVDVYIVF
                     SGEGATLNAFQLAEQIRSELPHVGVMTHCSGGKFQKQFKRADKVEAQIALVIGESEVA
                     EKQVVIKDLRSGAEQITIAQSELIAELSKRF"
     gene            15421..16041
                     /locus_tag="PXC99_000018"
     CDS             15421..16041
                     /locus_tag="PXC99_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HDL5416526.1"
                     /translation="MSNEYLNKTEEQQFEDAKNWFKENGTPILVAIILACAATAGWNF
                     WKNHQLETAQKTSASYQSVMESYLQNPSKNQPLVEKFIADNKDSSYAAFAQFEVAKQA
                     VEKGNFSAAKTALQSVLTYSDSTLQSIARFRLAQIDFQLKSYDEALASLAQIQDKAWE
                     LRKQILTGDILAAKGDIPAAKSAYEQAKTTANPQEQTLIDVRLNNL"
     gene            complement(16104..17207)
                     /gene="dnaN"
                     /locus_tag="PXC99_000019"
     CDS             complement(16104..17207)
                     /gene="dnaN"
                     /locus_tag="PXC99_000019"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HDL5416527.1"
                     /translation="MQITITREQLLKPLQQVCGVLSSRPTLPVINNLLLEIEGNRLSL
                     TGTDLEVELTTQAQLLQAVDFAGKFTIPAKKFLDISKSLPDDSVISVQFEEDKAIIKA
                     GRSKFSLATLPASDYPNLMDWKPEVDFSIDQSTLARLIDATQFSMANQDARYFLNGMK
                     FETEGNLLRTVATDGHRLAVCTMVLNQELLTHSVIVPRKAVLELSRLVASNDETVRLE
                     IGSSNIRITMNGIVFTSKLIDGRFPDYRRVLPRNADRILEAETETLKRALMRAAILSN
                     EKFRGVRLTLSNNLLKITANNPEQEEAEEIIDVAYDSPEMEVGFNVSYVLDVLNTLKC
                     QRVRFSLVDSSSSCLIEDCDNSSAEYVIMPMRL"
     gene            complement(17226..18575)
                     /gene="dnaA"
                     /locus_tag="PXC99_000020"
     CDS             complement(17226..18575)
                     /gene="dnaA"
                     /locus_tag="PXC99_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HDL5416528.1"
                     /translation="MEQIVSSLWSDCLNHLQTKVSPTDYSTWLRPLQASSENGELTLY
                     AQNQFVENWVKDKFLSEITELARFLAKNDNLVVTLKVGIKPTEQPKVSPNLKNESSEF
                     SNTGFKTGLNPNQTFDNFVQGRSNQLAKLVAQQVVDNLGESHCNPLSFYAGTGLGKTH
                     LLHAIGNELVKRTPGTRVLYIHLERFYRDIIKAINSSNNDAEKIKKFYRSLDVLMIDD
                     IQFLANKPKVQEEFLHLLNALFEQRKQIILTSDVLPKNIDKIDTAIKSRLSGGISATI
                     EPPELETRVAILRQKALERGADLQEDAAYLMGQKLRTNVRELEGALNRVIAWQKLTLR
                     PITVDAVRETLQDLFASFDYLITIENIQRIVAEYYGIKVADIKSKSRARSIARPRQMA
                     MALAKELTNHSLPEIGREFGGRDHTTVMHACKTINELRDTESGIQEDYIHLTRKLSS"
     gene            complement(18762..20609)
                     /locus_tag="PXC99_000021"
     CDS             complement(18762..20609)
                     /locus_tag="PXC99_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5416529.1"
                     /translation="MFEKLFKWFEARVETYPNEMPKTPKSGLIPFIYDATKGMRFYIL
                     LLTVLVAAVGIIEAVLFRFMGDLVDWVNKYSPTELWAEKGWTIIGMFFIALLAVVFVY
                     LASSIRFQSLQGVFPMRLRWNFHRLMLGQSLGFYQDEFAGRVSAKVMQTALSVRDVIM
                     TCADMLVYVLVYFTTSSVILLQLDGWLFVPFILWVISLAATIIYFVPKLAQAAQEQSD
                     ARSLMTGRITDAYANIATVKLFSHGNRESAYAKESMEGFMVTVHKQMRLVTVIETVTN
                     LTSMALIISTAGIGLWLWGSSVVTAGAIATSTALALRIKGLSQWIMWEFARLFENLGT
                     VQDGMITLSKPHNVVDKIDAKPLNVTKGEIKFENVDFAYDPKKPLLKDFDLTIKPGEK
                     VGLVGRSGAGKSTLTNLLLRFYDIQDGSITIDGQNIRDITQESLRSQIGLVTQDTSLL
                     HRSVRENLMYGRPNATEEEMIKAVEQAAASEFIPNLQDAKGRTGFDAHVGERGVKLSG
                     GQRQRIAIARVMLKDAPILLLDEATSALDSEVEVAIQENLTQLMEGKTVVAIAHRLST
                     IMAMDRLIVLDKGEIVEQGTHEELLAQNGVYARLWAHQSGGFLPENTDI"
     gene            complement(20678..21187)
                     /gene="luxS"
                     /locus_tag="PXC99_000022"
     CDS             complement(20678..21187)
                     /gene="luxS"
                     /locus_tag="PXC99_000022"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005706864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HDL5416530.1"
                     /translation="MPLLDSFKVDHTKMNAPAVRVAKTMTTPKGDTITVFDLRFCRPN
                     IDILPVRGIHTMEHLFAGFMRDHLNSEQVEIIDISPMGCRTGFYMSLIGSPSAEEVVK
                     AWTASMEDALHKIPDVSAIPELNEYQCGSYKEHSLKEAHQIARNVLAAGIGINRNEDL
                     ALDEKLLNP"
     gene            complement(21205..23871)
                     /locus_tag="PXC99_000023"
     CDS             complement(21205..23871)
                     /locus_tag="PXC99_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HDL5416531.1"
                     /translation="MTMEENTHTVVDAQIRQPRKISPFWLLPIVAFIIGALLFFQILK
                     EQGETITIRFSKGDGITAGKTAIRYQGLQIGQVKRVYFVDNLKEVEVQAEINPEAKSI
                     LRKQTKFWLVQPSASLAGVSGLDAIVSGNYITLLPGEGDFVDEFIAEEDPPAITVSDG
                     DLLIRLISDDIGSITVGASVYFRKVPVGNIADYRFTKDQKKIEIDVVINQKYAHLVKK
                     ESRFWNISGISADVNLQGIKINMDSLASVVQGAVAFDSPDNMEIAEQGQKFELYPDLK
                     SAKRGIEINVKLPLTHNLKINETGVFHQNVQIGMLSQLKLPQVKDNGVPQQESGQHKQ
                     IDGVLLIDPSYENLLRSQTKILLKEPKFSLNTEQLTKVGELLRGVYFEVHPGEGEPQS
                     EFVVQNEADYLLSLPNLLSFSLIAPQAYGVDTNQGIYYSDVQIGEIVKRSLELDKVRF
                     DVIIYPPYRNLIGSNSKFVAISNIDMSVGLDGLRVHAGSPSEWLKGGVRLINGKNDGS
                     PKKQYALYKDIESAESGMATLDKKATTTLSADSLSGISEGSLVLYRDFQVGEVLKITP
                     KQQKFEVELFIQPNYRHLLTEKSRFWIEPATSVDVSLKGVNITTAPLMRTLKGAISFD
                     DGGSKGNKTLYASKEKATSGNTYLTLIAKDASKLSEGMDIKYMGLTVGQIEKLELQNA
                     KKQIKATAYIQRKYYPLIAKAGSKFNVISPEISTSGFKNLDAALQNYITVDVGSGQAQ
                     NQFVLADTDTVKTTYANGFPIIVETTNANGIQPEAPVLYRGMQVGIVSRLGLSELGDR
                     VLIYVNIQDKYKHLVRTNTQFWQASGYTMDVSLQGVSMNSGTMSQLLNGGIEFSTPYT
                     KVVKPQAQPNRRFFLQRKLPDEAPAWDQGIAE"
     gene            complement(23954..24394)
                     /gene="fur"
                     /locus_tag="PXC99_000024"
     CDS             complement(23954..24394)
                     /gene="fur"
                     /locus_tag="PXC99_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HDL5416532.1"
                     /translation="MSEANIKRLKEVGLKVTEPRLTILALMQDIRDEMQHFAAEDIYK
                     ILLEKGSDIGLATVYRVLNQFEEAGILTRHNFDANKAVFELNMNHEHDHIICMDCGKV
                     FEFKDPDMERRQREISEKHGMELTNHSLYLYGKCSNLTNCDEKK"
     gene            complement(24430..24954)
                     /gene="fldA"
                     /locus_tag="PXC99_000025"
     CDS             complement(24430..24954)
                     /gene="fldA"
                     /locus_tag="PXC99_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HDL5416533.1"
                     /translation="MAVVGLFYGSDTGNTENISKMIQKKLGAELIDIRDIAKSTKEDI
                     EAYDFLMFGIPTWYYGESQADWDDFMPTLKEIDFNGKVVAIFGCGDQEDYAEYFCDAM
                     GTVRDVVEPNGGVIVGHWPTAGYTFEVSQALVDDDTFVGLCIDEDRQPELTTERVNKW
                     CEQLKEEMCLDQLA"
     gene            complement(24960..25235)
                     /gene="ybfE"
                     /locus_tag="PXC99_000026"
     CDS             complement(24960..25235)
                     /gene="ybfE"
                     /locus_tag="PXC99_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA regulated protein"
                     /protein_id="HDL5416534.1"
                     /translation="MAKQDSDCITLDLFATVPKVGRPRTNPLDREQQLRINKRNQLKR
                     DKSSGLKRVELKLHSNLVKLLEEQASEQGVSRGQLIETILNNYLTNR"
     gene            25476..26462
                     /locus_tag="PXC99_000027"
     CDS             25476..26462
                     /locus_tag="PXC99_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDL5416535.1"
                     /translation="MSNIHLAIAADFTLAEKLLEALANQDLGIENISAVELEPFGEEQ
                     NLRFGAKAVAQYALDEVNWAEFSHVLFAGKMAQAEVLAEAVKAGCVILDLYGITALIG
                     DVPVVVPSVNDENVANLRERNIVALANPQISQLALALKPLLNEPLKQVWVTSLLPSAY
                     FGDEKVKELAGQTARLLNGIPFDENAERIAFDVVPANVQGEEKSLPFSKAFELQIAKV
                     LPNLTACTTFHSVQVPVFYGVSQMVSVQSEYQLDANALSEAWKAENWLNFNENSVITA
                     VKNGENEEQNALEISQLLAKSEQEVQFWTVADEQRFSLAFLAVKLLKLVLAY"
     gene            26559..27854
                     /locus_tag="PXC99_000028"
     CDS             26559..27854
                     /locus_tag="PXC99_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDL5416536.1"
                     /translation="MLEKLFQLKAKGSNVKTEIIAGITTFFTMVYIVFVNPSILGVAG
                     MDTQVVFVTTCLIAAFGTIAMGLFSNLPIALAPAMGLNAFFAFVVVQKLGYSWQVGMG
                     AIFLGSVGLFLLTVLQVRYWFMSAIPLGLRVGIGAGIGLFIALIGFKNMGLVVPNPAT
                     LVALGDLHDPKVLMGILGFFIIVVLAAKGIHSGVLISIVIVTALALAFDPAVSFNGIM
                     SMPPSLGAVVGQVDIAGAFDVALLGMIFSFMLVNLFDSSGTLIAVTTKAGFADEQGRF
                     PKMKQALLVDSTAAMAGSYMGTSAISTYIESGSGVSVGGRTGLTAVVVGILFLLTIFF
                     SPLAGLVPAYATAGALVFVGILMASSLIEVKWDDLTEATPAFITTAMMPFTYSITEGI
                     AFGFISYCVMKAFTGRWKEINLSVLVVSLLFIAKFVWVG"
     gene            27974..28342
                     /locus_tag="PXC99_000029"
     CDS             27974..28342
                     /locus_tag="PXC99_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE/DsrF/TusD sulfur relay family protein"
                     /protein_id="HDL5416537.1"
                     /translation="MSNSVQKLLFIINSAPYGNETFFSALRLALQIQEQHKANTEIKL
                     FLMSDAVTAGLAKQNPAEGYHIQQMLEILTAQGANVKLCKTCTNARGITDLPLADGVE
                     IGTLIELADWTIQADKVLNF"
     gene            28342..29535
                     /locus_tag="PXC99_000030"
     CDS             28342..29535
                     /locus_tag="PXC99_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDL5416538.1"
                     /translation="MQNIDVVVIGAGAAGLFCAAQLGQAGKKVVVLDSGKKVGRKILM
                     SGGGFCNFTNLDVSAGNYLSQNRHFVKSALSRYTQWDFISLVSHYGISYHEKELGQLF
                     CDESSQQIVDLLQAECNKGKVEILLRQAVISVEKVANFFEISTACGKFQSEHLVIATG
                     GLSMPALGASPFGYQLAEQFGIPVVPPRASLVPFTWKESDKYFAELSGIALPITVSAN
                     GKSFSNQMLFTHRGLSGPAILQISNYWELGETVEIDLLPSQSITDILSELRQSSPKLQ
                     LKTVLSRYLPKKLVEVWLEQKLLTDKVIADLSKKDLTLLEQFIHHWHFLPNGTEGYRT
                     AEVTKGGVDTDYISSKTMEAKNTAGLYFIGEVLDVTGWLGGYNFQWAWSSAFACAEGI
                     IEKSK"
     gene            complement(29606..29824)
                     /gene="infA"
                     /locus_tag="PXC99_000031"
     CDS             complement(29606..29824)
                     /gene="infA"
                     /locus_tag="PXC99_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001040186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HDL5416539.1"
                     /translation="MAKEDCIEMQGTILETLPNTMFRVELENGHIVTAHISGKMRKNY
                     IRILTGDKVTVEMTPYDLSKARIIFRAR"
     gene            complement(29934..30593)
                     /locus_tag="PXC99_000032"
     CDS             complement(29934..30593)
                     /locus_tag="PXC99_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtjB family periplasmic protein"
                     /protein_id="HDL5416540.1"
                     /translation="MYISREKITKTLLLAGITLLCCGIVAVILMGVNQFKLGSQLASI
                     NQVSNLSHLLVRQQANIFSFLLVKNAKTDELVDALDSFAKEDFIIDANIYSPNGVLLA
                     QSQNAKDLKVLLDSEQSAKTQQIVEPIFSQQALVGFLRVTFDAEYGQTTKARVEQQFH
                     QLYGEIIILLLTGILLASSINYYFRRKIHHVQISPKPLMSQVKTQTQRFHSRRRWIKR
                     K"
     gene            30679..31542
                     /gene="serB"
                     /locus_tag="PXC99_000033"
     CDS             30679..31542
                     /gene="serB"
                     /locus_tag="PXC99_000033"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HDL5416541.1"
                     /translation="MTNTIFIYSKTLNEREIEQFSQQTAAILLKQAVYLDYKIAFFST
                     NLTACELRETAQKINADISDLTIIPTLNQGGLLLMDMDSTAIKIECIDDIAKLAGTGE
                     VVSAITASAMRGELDFEQSLRKRVGTLENASESILQKVRENLPLMDGFEQMVAILKEH
                     GWKLAIASGGFDYFADYLKQKYGLNFAVSNQLEIIDGKLTGKVLGKVVDAQHKADTLQ
                     NLATTFNIPPNQWVAVGDGANDLPMLKTASLGVALHAKPKVQAQADFVVNFGDLTALC
                     LLLNANHLFQH"
     gene            31558..32049
                     /locus_tag="PXC99_000034"
     CDS             31558..32049
                     /locus_tag="PXC99_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HDL5416542.1"
                     /translation="MPSFDIVSEITMHEVRNAVENANRVLSTRYDFRGVEAVIELNEK
                     NESIKLTTESDFQLEQLIEILIGSCVKRGIEHSSLDIPTESEHHGKLYSKEIKLKQGI
                     ESDMAKKITKLIKDSKIKVQAQIQGEQVRVTGKSRDDLQAAIQLVKGADLGQPFQFNN
                     FRD"
     gene            32134..32310
                     /locus_tag="PXC99_000035"
     CDS             32134..32310
                     /locus_tag="PXC99_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5363 domain-containing protein"
                     /protein_id="HDL5416543.1"
                     /translation="MMSEQTEKKGWFKKALEKYDAFCDELGVNQGACRGCVPVVKFDP
                     EPEKEQPEKSENKT"
     gene            complement(32358..32654)
                     /locus_tag="PXC99_000036"
     CDS             complement(32358..32654)
                     /locus_tag="PXC99_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416544.1"
                     /translation="MKKHHIIILTLASASVVACSSNTPVQVVNGDKNIDYSQPKTIYI
                     SETNTQPPALTKQEKIKPSNATALCFNGSYSTDIQNPCKKDGGVKQYFAHHHAN"
     gene            complement(32731..33699)
                     /gene="mdh"
                     /locus_tag="PXC99_000037"
     CDS             complement(32731..33699)
                     /gene="mdh"
                     /locus_tag="PXC99_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HDL5416545.1"
                     /translation="MCQSKKVALLGAAGGIGQSLALLLKLNLPAKSELSLYDISPVTP
                     GIAVDLSHIPTDVKVTGFAGEDPTEALKDADVVVISAGVARKPGMTRADLFNTNATIV
                     HNLVEKAAKVCPKACIAIITNPVNTIIPIAAEVLKKAGVYDKNKLFGVTTLDVIRANT
                     FVAEAKDVNVKYVRVPVIGGHSGTTILPLLSQATVNGLKLEFTQEQIEQLTHRIQNAG
                     TEVVEAKAGGGSATLSMAQAGAEFALGLVRALIGEDVIRYAYVDNANGETSPAFFAYP
                     IRLGTNGVEKVLPIGNLSEFEKDQLEQLIPVLNDEIQLGQTFNKNA"
     gene            33895..34356
                     /gene="argR"
                     /locus_tag="PXC99_000038"
     CDS             33895..34356
                     /gene="argR"
                     /locus_tag="PXC99_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ArgR"
                     /protein_id="HDL5416546.1"
                     /translation="MDKIDSLSEAFKSLLKEEKFGSQSEIVAALQEMGFDNINQSKVS
                     RMLSKFGAVRTRNPKMEMVYQLPVELSVPTTSSPLKNLVVDIDHNDALIVVKTSPGAA
                     QLIARLLDSMGKAEGILGTIAGDDTIFITPVRNVQIEKLVKNVTQLFETSL"
     gene            34406..35302
                     /locus_tag="PXC99_000039"
     CDS             34406..35302
                     /locus_tag="PXC99_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HDL5416547.1"
                     /translation="MHIFITGGTGFIGRELIQQLKSENHHFTLLTRDTEAKSDDLQIN
                     YCYSLDELVDLNDFDAVINLAGEPIFDKRWTDEQKQKLIESRVNLTNKLSQLMNASSN
                     PPHTFLSGSAIGIYGDLPPSANFYTESTACYQDCFTNRLCQQWEAAALKAASDKTRVC
                     LIRTGTVFSPEGGALKKILPLYRCGLGGKLGSGKQYWAWISRRDHVQAVIFLLKNANC
                     SGAYNFVAPNPVRNEEFNRILANAVNRPAFFTVPEFALKLGLGERACLVLDNQQLIPE
                     KLLAASFVFQDPILTENVFLNP"
     gene            35347..37545
                     /gene="uvrD"
                     /locus_tag="PXC99_000040"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
     CDS             35347..37545
                     /gene="uvrD"
                     /locus_tag="PXC99_000040"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase II"
                     /protein_id="HDL5416548.1"
                     /translation="MDFSLLLDGLNDKQREAVAAPIGNYLVLAGAGSGKTRVLTHRIA
                     WLIGVENVPESNILAVTFTNKAAAEMRHRIEYTLSQSGDNRLFGMWVGTFHSIANRLL
                     RSHYLDADLPQDFQIMDTEDQQRLLKRLLKLHNIDEKHFPPKHVAWYINAQKDKGKRA
                     KDIDHYNDPNEKKLVEIYQIYQDACDRAGLLDFAELLIRAYELFKTKSTILQRYQQRF
                     QQILIDEFQDTNNIQYDLIRLLAGDVGKVMIVGDDDQSIYGWRGAQVENIQRFLNDYD
                     NAQTIRLEQNYRSTGNILSCANELIANNDNRLGKNLWTDSGDGEPVDIYCAFNELDEA
                     RFVASQIKQWKEDEGDLAECAVLYRSNSQSRVIEEALIQANIPYRIYGGMRFFERQEI
                     KDALAYLRLIANRQDDAAFERVINTPTRGIGDRTLDTLRQITRGRQITLWQAIQVAVQ
                     EEQLSGRATSSLLRFVELINALDQETEQMSLAEQTDFVIKKSGLYEMYKQEKGEKGEV
                     RIENLEELVTATKQFVKPDEAEELTDLTAFLTHASLEAGEAQASQHEDYVELMTLHSA
                     KGLEFPRVFIVGVEEGIFPSGMSFDEGRLQEERRLAYVGITRAKKKLTISYAESRRLY
                     GKEERHVPSRFIAELPEEHIREVRLRGSINRAASFNQANSFAKNPTKTTASFLNDDTW
                     KMGQKVNHAKFGQGTIINVEGSGEATRLQVAFVGNGIKWLIAKMANLERI"
     gene            complement(37692..37766)
                     /locus_tag="PXC99_000041"
     tRNA            complement(37692..37766)
                     /locus_tag="PXC99_000041"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(37732..37734),aa:Gln,seq:ttg)
     gene            complement(37821..37895)
                     /locus_tag="PXC99_000042"
     tRNA            complement(37821..37895)
                     /locus_tag="PXC99_000042"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(37861..37863),aa:Gln,seq:ttg)
     gene            complement(37921..38005)
                     /locus_tag="PXC99_000043"
     tRNA            complement(37921..38005)
                     /locus_tag="PXC99_000043"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(37969..37971),aa:Leu,seq:tag)
     gene            complement(38008..38084)
                     /locus_tag="PXC99_000044"
     tRNA            complement(38008..38084)
                     /locus_tag="PXC99_000044"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(38048..38050),aa:Met,seq:cat)
     gene            complement(38251..39075)
                     /gene="aroE"
                     /locus_tag="PXC99_000045"
     CDS             complement(38251..39075)
                     /gene="aroE"
                     /locus_tag="PXC99_000045"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HDL5416549.1"
                     /translation="MNRYAVWGNPIAQSKSPRIHQLFALQTQRNIEYIANLGDETAFE
                     QQLADFFASGAKGCNITAPFKERAFKLADEFSETALLAQACNTLKRLEDGRLYADNTD
                     GAGLVSDLERLGWLQKGHKTLILGAGGATKGVLLPLLKAGLEITLYNRTQEKAVVLAE
                     KFAKFGKIQTACLSDLANQLFNLIVNATSLGLQGKYVELPESVIASANIYDMQYAPNM
                     QTPFLNYARRCGATACQDGLGMLVGQAAFAFSLWEGQFPDVEPVLAQLKLEMQTVK"
     gene            complement(39082..39636)
                     /locus_tag="PXC99_000046"
     CDS             complement(39082..39636)
                     /locus_tag="PXC99_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5/YciO/YrdC/YwlC family protein"
                     /protein_id="HDL5416550.1"
                     /translation="MNNFLEIVNQLKQEEVVAYPTEAVFGLGCNPQSEKAVRKLLVLK
                     QRPEEKGLILLASDLKYLLPYIDEARMTEQAWQRLSHIGEQAITWIVPVKNTVPSYLT
                     GKFDSIAVRLCNVPAVVQLCEASGVALTSTSANLSGEPPCRNAKEVIDQFGQDFPVLH
                     ADTLGRENPSEIRDIFSQQIFRQG"
     gene            complement(39629..40165)
                     /locus_tag="PXC99_000047"
     CDS             complement(39629..40165)
                     /locus_tag="PXC99_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="topoisomerase DNA-binding C4 zinc finger
                     domain-containing protein"
                     /protein_id="HDL5416551.1"
                     /translation="MVLFKSTKQTETCPQCGSPLQIKQGKKGLFLGCSAYPECDYIKP
                     LHQAGHIIKQLDELCPECGGNLQLKQGNYGIFIGCSHYPECHFIVHEEAEVEEEFDCP
                     ECKQHKLIARKGRSGKIFYGCIGFPNCKFTLATRPINHLCEKCGCELATIKKIKGKQF
                     TICANKSCQHQTELKPNE"
     gene            complement(40175..40486)
                     /locus_tag="PXC99_000048"
     CDS             complement(40175..40486)
                     /locus_tag="PXC99_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HDL5416552.1"
                     /translation="MNREKITFFSRFEADILSGKKTITIRDKSESYFQPNQELAVFTN
                     ETDRFFANIKVLSVTPIVFDELNEQHAKQENMSLAELKQVIREIYPNDNAFFVIEFTL
                     I"
     gene            complement(40479..40955)
                     /gene="recX"
                     /locus_tag="PXC99_000049"
     CDS             complement(40479..40955)
                     /gene="recX"
                     /locus_tag="PXC99_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HDL5416553.1"
                     /translation="MTTSTTKTNKYTAVNYLLYLLSKRDYSEQELRQKLKQKEYELTE
                     IDAAIEKAQANQWQSDERFCTTFIRYRSMQGIGPRRLKQELKLKGVKDWLINQELENA
                     EVDWFELAEQIFEKKRPLVWDLKAKQKMWRFMVSRGFYNDHFSHLMALDYSSDEYE"
     gene            complement(41014..42120)
                     /gene="recA"
                     /locus_tag="PXC99_000050"
     CDS             complement(41014..42120)
                     /gene="recA"
                     /locus_tag="PXC99_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HDL5416554.1"
                     /translation="MAEKKSQKNTPVKQIDPEQKEKALAAALAQIEKQFGKGSIMKLG
                     DTQALDIEAVSTGSLGLDSALGIGGLPMGRIVEIYGPESSGKTTLTLSVVAQAQKNGK
                     TCAFIDAEHALDPIYARKLGVDTDGLLISQPDNGEQALEICDALVRSGAVDVIIVDSV
                     AALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKATNCLVIFINQIRMKIGVMFG
                     NPETTTGGNALKFYASVRLDIRRSGVVKDGDEVIGSETKVKIVKNKVAPPFREVQFDI
                     MYGEGIARMNELLILAESHGFINKAGAWFSYEGEKIGQGKNNAIKWLKEHPEVASKIE
                     QDIRNLLISNPTFTATPDSENADNADDEFSEEEL"
     gene            complement(42221..42841)
                     /locus_tag="PXC99_000051"
     CDS             complement(42221..42841)
                     /locus_tag="PXC99_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HDL5416555.1"
                     /translation="MCRFPLFETLSIIDGKVQNLQYHQQRFEQATQEYFGCEPRFSLA
                     DILVVPEASQRGKVRCRIDYNATEFELKFFIYSPKKVERFRLVEVENWDYHLKFSDRK
                     RFDLLPILQNEEVIILNNGYVSDCSIGNLLFLKQGIWYSPQHYLLKGTQLSKLLDEGK
                     VVLAKIAKQDLHQYEKIMLINALNPFEEPRALPCSQIYFCDLDRKS"
     gene            complement(42819..43793)
                     /locus_tag="PXC99_000052"
     CDS             complement(42819..43793)
                     /locus_tag="PXC99_000052"
                     /EC_number="2.6.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component I"
                     /protein_id="HDL5416556.1"
                     /translation="MQDFIHQANHYGQAKRPFFFLIDFEQQKPLIFPLEQAHASGLFF
                     EFFCKSNLEKPVEKPTKAFELSANPIPFSEYQTGFELVKKEIQAGNSYLLNLSYPTAI
                     ETNYSLAEIFAASKAKYKCYLQGRFVCFSPECFVRIENNRIFSYPMKGTINANEENAE
                     QKLMASEKEFTEHNTIVDLIRNDLALVAKNIEVTKYRYVEKVETHRGAILQTSSEICG
                     ELGENWQENIGSILAKLLPAGSISGAPKEKTVSIIQQAELGKRGYYTGIFGYFDGESL
                     ESAVAIRYIAQTSNGLVFHSGGGITSQSVLTDEYNELLEKVYVPISAI"
     gene            43903..45510
                     /gene="rmuC"
                     /locus_tag="PXC99_000053"
     CDS             43903..45510
                     /gene="rmuC"
                     /locus_tag="PXC99_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HDL5416557.1"
                     /translation="MHFQEIGIYIALAVCVLVGVYLFFLKSRYQRNAYELSQDLGKIT
                     ENFEQIQQKYEVLAQEKNQLEQWAIQQQTKYEAVSERLNERDGQLQRFQQKIELAEQQ
                     ENQLERYINELKERVGSSQAKAESLEEQLQFSQSSLSTKERENQALFSRLNEVQNELT
                     ELRTTLSEKQANFEAQQRNFIEVKQQLNVEFQHLAQQILDEKSKRFSETNQSSLEALL
                     KPFKEQIEGFQKRVNEVHSESLKGSANLEAEIKRVLQIGVSMSEEAQNLATALKGNNK
                     IAGNWGEVQLESALQSAGLLAGEHYQAQESFRDEEGRRFAPDFVVHLPDQKHLIIDSK
                     VSLVAYDQAVRSEENFAISQALDEHCRSLRNHIEGLSKKNYSALLGIKSPDFVLMFIP
                     IEPAYIEAMKHDPQLFNFGYERNVILVSHTTLMPILRTVANLWRIERGNSEAREISEK
                     AGEIYNQVCAVADRLAKLGNTLNTANNQYNQTVTSLVGRQGLLGKVERFQHLSSKASQ
                     IVPQVELIENEVDTIKLEMVSRELLEE"
     gene            45573..46157
                     /locus_tag="PXC99_000054"
     CDS             45573..46157
                     /locus_tag="PXC99_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component II"
                     /protein_id="HDL5416558.1"
                     /translation="MLKKLLIIDNHDSFTFNLVDLLRKLDVPAKVVLVEELDLNEVEH
                     FSHILISPGPDVPRAYLQTFAMLERYHQTKSILGVCLGHQTICEFFGGKLYNLNDVRH
                     GQQRTLTQIEPNPIFKGLPKQLKVGLYHSWGILQNSLQNTPLVPTAVCDQNVLMAFKH
                     QHLPIFGVQFHPESFITEFGQQMLANWLEITQDF"
     gene            46254..47336
                     /gene="prfA"
                     /locus_tag="PXC99_000055"
     CDS             46254..47336
                     /gene="prfA"
                     /locus_tag="PXC99_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HDL5416559.1"
                     /translation="MKDSIINKLESLSERHEELQALLGDASIISDQDKFRAYSKEYSQ
                     LEEVVGTFNRWKKLNNDIEEAQLLLDDPDMKDMAAEEIAENKAEIENLEQHLQILLLP
                     KDPNDEYNAFLEIRAGTGGDEAGIFAGDLYRMYSRYCESKRWRIEEMSANESEQGGYK
                     EIIVKISGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEIN
                     PSDLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNKAKALAVLAS
                     RIVQVEQERQAAEQADTRRNLLGSGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMN
                     GKIDELIQPIITEYQADQLAALSEQN"
     gene            47448..48050
                     /locus_tag="PXC99_000056"
     CDS             47448..48050
                     /locus_tag="PXC99_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416560.1"
                     /translation="MRKLGLLAVFTLVLSACSNSTKIEQTILSKQDIVGSWVCAIKYD
                     DLKVSTLDFSEFKANGEMTNFGDISDENFEPIKFTYVTGDKGKWDLKGNRLVIDYDLS
                     ERKVKRTTPKKFLEFLKQEERKASKTAKKLLKYEQGIFNILSDQKNTENSKIILDILK
                     FGHSRMAIQQNMGDKVYSGGCVTADKAEEYLDILKNRNSK"
     gene            48050..48916
                     /gene="prmC"
                     /locus_tag="PXC99_000057"
     CDS             48050..48916
                     /gene="prmC"
                     /locus_tag="PXC99_000057"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDL5416561.1"
                     /translation="MDYREWLTFAEQKLLENSGADPYLNAKFDANLLLQAVTKRSKSA
                     IFAFSETLLSESELAELAEKLARRAKGEPMAYILGYREFWSLPLKVSPATLIPRPDTE
                     RLVELALEYANKRLGNQKMLQILDLGTGTGAIALALASELGEKAQIIGVDFQNEAVQL
                     AEENRRNLGLNQVTFLQSDWFSSLANQQFDLIVSNPPYIDESDENLTVGDVRFEPLTA
                     LVADNKGLSDLQKIIENAPLHLKPQGALMLEHGWKQGNLVRDLFDLHLWEQVETAQDY
                     AGNDRVTKAILK"
     gene            48925..49791
                     /locus_tag="PXC99_000058"
     CDS             48925..49791
                     /locus_tag="PXC99_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB1 family protein"
                     /protein_id="HDL5416562.1"
                     /translation="MDDIIEELLKELEDPKVTISETELKKFLYREILRLTTLIDKNVS
                     EQQVFGQMSALVKKARYNVNGEGDEERINQLLHLVYREWGFHCYYEDYFHTENLLLNQ
                     VIRKRRGMPVSLGAVALYLSAVLDLPLYPVNFPTQLVLRAEIHQPNGATKVRFINPWN
                     GEFLTIEMLNKWLEGEMGFGVEVTPDLLRRAEPQELLERVETVFKMALTREGKYEETL
                     RLIEYRLAFSPEDPYEIRDRGMVLASMDCYQAALEDINYFIDQCPEDPSAEILKMEVK
                     GLQQKSQESVVH"
     gene            49881..50735
                     /gene="kdsA"
                     /locus_tag="PXC99_000059"
     CDS             49881..50735
                     /gene="kdsA"
                     /locus_tag="PXC99_000059"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HDL5416563.1"
                     /translation="MTDKIVKVGNIEVANHKPFTLFGGMNVLESRDMALRVCEQYVEV
                     TQKLNVPYVFKASFDKANRSSIHSYRGPGMEEGLKIFQELKQTFGVNIITDVHEIYQC
                     KPVAEVVDVIQLPAFLARQTDLVEAMARTGAVINVKKPQFLSPGQMGNIVEKIAECGN
                     DQVILCDRGTNFGYDNLVVDMLGFGIMKKVSKGCPVIFDVTHSLQCRDPFGAASGGRR
                     DQVTELARSGMAIGLAGLFLEAHPDPNSAKCDGPSALPLSKLEAFVSQMKAIDELVKS
                     FEEIDTSK"
     gene            50956..51903
                     /locus_tag="PXC99_000060"
     CDS             50956..51903
                     /locus_tag="PXC99_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase"
                     /protein_id="HDL5416564.1"
                     /translation="MLNIVFLDRTGIPATHDIPRPNFPHTWTEYATTSADQTFERVKE
                     ADIIITSKVLLQRDLLAKLPKLKLIAITATGTNNVDLAAAKELGIAVKNVTGYSSVTV
                     PEHVIGMIYSLKHRLADYHRDLITSDRWATCGQFCYVDYPIHDVRGSTLGIFGKGNIG
                     AEVARLAQAVGMQVIFAEHQGATEIREGYTAFEEVFKQADIISLHCPLTEQTQNLINA
                     ETLALMKPTAYIINTGRGPLIDEQALLEALEQGKIAGAALDVLVKEPPEKDNPLMLAA
                     KRLPNLLITPHVAWASDSAVTTLVNKVTQNMEEFVATGM"
     gene            52001..53173
                     /locus_tag="PXC99_000061"
     CDS             52001..53173
                     /locus_tag="PXC99_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit"
                     /protein_id="HDL5416565.1"
                     /translation="MNLTPFFIAFRYFRSKSADRFGRLVTNLASLGIVLGVMALVIVL
                     SVMNGLENMQKTNLLSTLPHAIITPQEGHFAKGEKLALPEFAKQSVVINRANVIIQSS
                     QGINAGQLIGVENATDDPLLVAENIPALLPSGEFKVVIGSRLANKLNVTVGDKLRLMI
                     TENSQYTPLGRVPVQRLFEISGVYQSNREASEFTLFANLADVGRLLRISEDQVQGVRL
                     YLQDPFQVTELSQYFDAERYQISDWREQKGEFFQAVKMEKNMMGLLISLIIVVAISNI
                     VTSLSLMVVDKQGEIAILQTQGLTKKQVMQIFVFQGAIVGVIGSIIGGLLGVLIAYNL
                     DQIILLLNPSIHLPTLISGTQIAVIVGVSMLLSLLCTLYPAYRASKIEPAQALRYE"
     gene            53190..53873
                     /gene="lolD"
                     /locus_tag="PXC99_000062"
     CDS             53190..53873
                     /gene="lolD"
                     /locus_tag="PXC99_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter
                     ATP-binding protein LolD"
                     /protein_id="HDL5416566.1"
                     /translation="MTELLRCEHISKFYDEGEQKVQVLKEVSFSMNEGELVAIVGSSG
                     SGKSTLLHTLGGLDQPSTGEVWIRGQSLQQLSSDKLALLRNQNLGFVYQFHHLMADFT
                     ALENVMMPMLIGKQNKTEAANRAEKMLQAVGLAHRMTHRPSALSGGERQRVAIARALV
                     NNPALVLADEPTGNLDQKTTESIFELIQQLNQEQNIAFLLVTHDLNLANKLSRSLVMR
                     DGVLSEGSL"
     gene            53870..55135
                     /gene="lolE"
                     /locus_tag="PXC99_000063"
     CDS             53870..55135
                     /gene="lolE"
                     /locus_tag="PXC99_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit LolE"
                     /protein_id="HDL5416567.1"
                     /translation="MSTPFFISWRYQRGKQKNKLVSLIALFSNIGIALGVAVLIIGLS
                     AMNGFERELNNRVLSVVPHAELVSFQGNQPQPIFDSKKLEALIKKSQNVTASSPFVSF
                     TALIENGAQLKIAQVRGVDPKKQDQASQLSQFIPPEQWQAFNQQFQADEDGLILGAGI
                     AKALEVEAGDEVTLLIPQPTEDGKLAQPLRFNLNVTGILRLDGQLDHSYALIPLNKAQ
                     ELMEYQANEVSGLEISLANPFDVQQLEMPQLNGYTQPLYLNTWIDKFGYMYNDIQLIR
                     TVMYIAMVLVIGVACFNIISTLIMAVKDKQGDIAILRTLGANNGFIRRIFLWYGLISG
                     MKGALFGLILGVILSLNLTAIIKAIEAFFEVKLLSDGVYFVDFLPSELHWQDVVYVLA
                     ATIILSLFASLYPANRAAKLEPAKVLSGH"
     gene            complement(55210..57141)
                     /gene="thrS"
                     /locus_tag="PXC99_000064"
     CDS             complement(55210..57141)
                     /gene="thrS"
                     /locus_tag="PXC99_000064"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HDL5416568.1"
                     /translation="MPIITLPDGSQRSFDNPVSVMEVAQSIGAGLAKATIAGRVNGER
                     RDASDIISQDSTLEIITAKDEDGLEIIRHSTAHLLGHSIKQLFPDVKMAIGPTIENGF
                     YYDIDLDRSLTQEDLDALEKRMLELAKTNYDVVKRPVSWQEARDTFEKRGEPYKMAIL
                     DENIERTATPALYHHEEYIDMCRGPHVPNMRFCHHFKLQKVAGAYWRGDSKNKMLQRI
                     YGTAWADKKQLAEYLQRLEEAAKRDHRRIGKALDLYHMQEEAPGMVFWHNDGWTIFRE
                     LETFVRTKLKEYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSENREYAIKPMNC
                     PGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQ
                     IESEVISCIKMVYDIYSTFGFTNIAVKLSTRPENRIGDDAMWDRAEKGLANALRNNGL
                     EYEIQEGEGAFYGPKIEFALRDCLGREWQCGTVQLDFALPGRLAASYVAEDNGRRTPV
                     MIHRAILGSIERFIGIITEEYAGFFPTWLAPTQAVVMNITDSQADYVQQVVKQLSDAG
                     IRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRTRKGADLGTYLVSDL
                     VEILKNQIKARELKLLGEE"
     gene            complement(57308..58657)
                     /locus_tag="PXC99_000065"
     CDS             complement(57308..58657)
                     /locus_tag="PXC99_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5416569.1"
                     /translation="MNSTKFYSLYSGIFFLFFGYGLFLNSAGIKLAEMGITDIIIGLL
                     NAAFFIGAALSTIFAHRIVSSVGHIRSFSVFCAVFAIAALGHIMIDTLWIWGVLRIIL
                     GFCHYSLLLLVESWLSEKTNVDTRGKVLATYNIIFYLAFILGVSLLSLELSSRNIFIL
                     STILVVMSMIPIALTKMVQPDIPARERISIPKLFAISPLALATSFISGMLVNGFFTMA
                     SVFLLKFSFSLSEISLYLMISMIGGFISQMPMAILSNRIGRRNAILACSVIATLTALA
                     GLFAIFQENLTAWGQYIIAFFFGCSLFSLYALSIARANDELPNNMNTVEVSRGLLFCY
                     GVGALVAPPLIGFAMSLSAEYGFYALFGLFSLSLFICAFRTKSIPKAERAEMQYATPI
                     ATASPLEEIEVVEDALIPFDEEAVQEYQAQLEILEQDPQTENENIELDEGAAENSKV"
     gene            complement(58932..59423)
                     /locus_tag="PXC99_000066"
     CDS             complement(58932..59423)
                     /locus_tag="PXC99_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter BioY"
                     /protein_id="HDL5416570.1"
                     /translation="MFTTQLIQTKRWLEANSITTFWLKTFIGATLLAIFAQISVPMYP
                     VPITGQTLALTVVGFAMGRKAATAAVLLYLFEGAIGLPVFAGGASGFHHFFGPTGGYL
                     LGYIPTAYFLGYYSDKGVLNSFWKSLFVALIASVITFAFGLAQLSLYQKAQYYKRAYI
                     HLF"
     gene            59504..60271
                     /locus_tag="PXC99_000067"
     CDS             59504..60271
                     /locus_tag="PXC99_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--protein ligase"
                     /protein_id="HDL5416571.1"
                     /translation="MVKPVYIYCDEGSSEIGVQSLLLAVKQHLQRPAYLINAKQIIQS
                     KFSDGCLLIMPGGADLPYCKKLNGEGNRRIRQFIEQGGAYLGICAGAYYGCAELNFVG
                     RDYSVNGNRELALFNGIAGIAKGSLPQFTNGQLYDKNIGSKAIVEVTLAEGGKMPFYY
                     HGGCCFEPNSTTVIYNPLAYYPDGSVAMIEGELGRGYYLLSGVHFELQAVVYWQKIVN
                     CCENLDIKTQEEAICSNFNVNYGSQIWQHLKQRLNQA"
     gene            complement(60262..61056)
                     /locus_tag="PXC99_000068"
     CDS             complement(60262..61056)
                     /locus_tag="PXC99_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HDL5416572.1"
                     /translation="MRFFDTHTHLDYLAESLNLSIPELVENAKQHQVECILIVAVFAK
                     NFAKVTACAKQKPENLVYGLGLHPLYIQQHQQQDLILLENLLSQQDPQCTAIAEIGLE
                     KAVSEVSTPELWKKQCEFLEAQLSLAKKFNLPVNLHSRKSHDQLFVFLKKAQLTKTGV
                     VHGFAGSYEQAKRFVDLGYKIGVGGTITYERANKTREAIRKLPLESLLLETDSPDMPV
                     FGFQGQPNRPERLLVTFNSLCELRTESPNLIAETIWQNSERLFFYA"
     gene            complement(61117..62703)
                     /locus_tag="PXC99_000069"
     CDS             complement(61117..62703)
                     /locus_tag="PXC99_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005667512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HDL5416573.1"
                     /translation="MLWFFFCVAVLVLGYFTYGKIIEKIFVINPKRATPAYAMNDGVD
                     YMPMSKTKIWLIQLLNIAGTGPIFGPILGALYGPVAMLWIVIGCIFAGAVHDYFCGML
                     SIRNGGATMPNLAGKFLGRPVKLFINVMALILLLLVGVVFVASPAQLLSTITMDIAGA
                     TQSAMELGDVEAIKESVASGGVTVWGMDKATVISVWTLIIFAYYILATLLPVDKIIGR
                     IYPFFGALLLFMSVGMVYGLVSAHLSATDPIDFFRTVNADGQGLTWEKFTQNFQVKGD
                     VPIWPLLFLTISCGALSGFHATQTPLMARCAQNEKEGRFIFYGAMITEGVIALVWCAV
                     GLSFYENPQALQDAISAGSPSKVVYDSSLHFLGFIGGIFAVLGVVVLPITSGDTAFRA
                     ARLQLAEIFGLEQRTLVKRLYIAVPLFVLGFIVSKVDFSVLWRYFTWANQMTAMVMLW
                     TAAGYLYRYKKFHWVCSIPAWFITTVCATYLANNKIGFGLDYELSVYIGFAITVVCVI
                     CFFAFLKPSEARDEDAYVTN"
     gene            complement(62889..64742)
                     /gene="dxs"
                     /locus_tag="PXC99_000070"
     CDS             complement(62889..64742)
                     /gene="dxs"
                     /locus_tag="PXC99_000070"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HDL5416574.1"
                     /translation="MEKKYPLLSEINSPEDLRLLSKDQLQTVVDELRAYLLESVSQTS
                     GHLASGLGVVELTVALHYVYQTPFDQLIWDVGHQAYPHKILTGRRDQMHTIRQKDGIH
                     PFPWREESPYDVLSVGHSSTSISAGLGIAVAAEKENAGRKTVCVIGDGAITAGMAFEA
                     LNHAGALHTDMLVILNDNEMSISENVGALNNHLARIFSGSLYTSVRDGSKKILDKVPT
                     IKNFMKKSEEHMKGVIFSPESTLFEELGFNYIGPIDGHNIDELVKTLSNMRELKGPQF
                     LHIRTKKGKGYTPAENDPIGYHGVPKFDPTAAELPKSKAAPTYSNIFGDWLCEMAERD
                     PKIIGITPAMREGSGMVEFSKRFPEQYFDVAIAEQHAVTFGAGLAIAGYKPVVAIYSS
                     FLQRAYDQLIHDVAIQNLPVIFAIDRAGIVGADGQTHQGAFDLSFMRCIPNMTIMAPS
                     DENEMRKMLYTAYTMNTPSAIRYPRGNAKGVKLEPMQRLEVGKGNIIREGKKVAILNF
                     GALLDEAKIVAEKHNYTLVDMRFIKPLDEALLQKVADSHELLVTLEENAIQGGAGSFV
                     NEYLQNIGKIKPLVMLGIPDFFVPQSTQAEAYADLGLDAQGIEAKIQKFDI"
     gene            complement(64787..65599)
                     /gene="suhB"
                     /locus_tag="PXC99_000071"
     CDS             complement(64787..65599)
                     /gene="suhB"
                     /locus_tag="PXC99_000071"
                     /EC_number="3.1.3.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012621556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-1-monophosphatase"
                     /protein_id="HDL5416575.1"
                     /translation="MNPMLNIAIRAARKAGNIIAKGYEQSPQDTQVLQKNTNDYVTEI
                     DKAAEAAIIDVIRKSYPEHSIVTEESGVLNGSNENVQWVIDPLDGTTNFVKRLPHFAV
                     SIAVRENGRTTVGVVYDPIRNELFTAVRGEGAKLNEFRLRIDAERRDLKGTVIATGFP
                     FKVIRHRDAHLNMLEGLMNNGVADFRRTGSAALDLAYVAAGRVDGFFEIGLKPWDFAA
                     GELIAREAGAIVTNFVGGTDYLKTGNLVVGNGRVVKEILNSIQPTLTEELKA"
     gene            65780..66814
                     /locus_tag="PXC99_000072"
     CDS             65780..66814
                     /locus_tag="PXC99_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA methyltransferase"
                     /protein_id="HDL5416576.1"
                     /translation="MQFKENNQPRFKHREERRSDECSPRFSDKGKMRGNEGKSDRPHK
                     LHFKRDEAYSRSEQIYPAEGKKASGEGSVQIWVKGGNSSVKEKKNGPLSPRAPEKIKK
                     NRLEEMKVYGENACISLFQQRPESIVRLWATVEGAKKLGDLMSYLAQHKKAYHVIDRE
                     EMERVTGTEHHGDMCLLVKKTASFVLEGYLQVPKKQDCLVLLDGVNNAQNVGGIIRTC
                     AFYGVKGIITENVDSLNSSAAARVAEGGLEFVRALETKNKHIALVQLRQAGYQIVHLT
                     RHKQAPSLTKIKLAEKVVFVLSEIPASDVAYAEDTTIQLSFNNPLNSGLNVAVNAGIL
                     LNQWYQTHIL"
     gene            66824..67708
                     /locus_tag="PXC99_000073"
     CDS             66824..67708
                     /locus_tag="PXC99_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HDL5416577.1"
                     /translation="MNQQKPFEVIAIVGTPRHDSAFETHLAVYNWLKDRDYQILVETE
                     VATQLQLKESYSLDQIGQRAELVIVIGGDGNMLGIARALAKYRVPLIGINRGNLGFLT
                     DIAPQTAFEQLYSCLVKNEYVIEERFLLEAFIERNGKIIAANNALNEIVVHPTQVARI
                     IEFEVYIDGKFAFSQRADGLIVATPTGSTAYSLSAGGPILTPNMNAMALVPMHPHTLS
                     SRPLVVDGDSQISLRFAKYNTPDLEVICDGQVNMHFTPEDRVLVRKSPDKLQLLHLKD
                     YSYFTVLGSKLGWASKLF"
BASE COUNT        20140 a        13366 c        14582 g        19659 t
ORIGIN      
        1 ttgatttatt tcaaatttta ccgcgggaat atgcaaaaaa tagggggttt tcctagccag
       61 aaggggagct ttttaggtaa aataagaaga ttatttttag ttaacctttt gttaagaaaa
      121 gataaaggtt gatcacagat ttgagaactt aatgtggctt ttaaaaatag gtgggggacc
      181 attgtttatt tttaagtaaa gctgcggctc aatagaagcg attgcgttag cgcaatcata
      241 ttttttaacc caaaagaaaa gtagtgcaaa caatatgatt acaatcaaaa aaggcttaga
      301 tcttccgatt gcgggaaaac ctgagcaagt aatccataac ggtaataccg ttactgaagt
      361 tgctatgctt ggtgaagaat atgtgggtat gcgtccttca atgaaagtgc gtgaaggcga
      421 tgtagtaaag aaaggtcagg ttctttttga agataaaaag aatccgggcg tgatatttac
      481 tgcccctgca agtggtaccg taacggcaat taaccgtggc gagaagcgtg ttcttcaatc
      541 ggtagtaatt aaagttgagg gtgatgagca aattaccttt gctcgttatg aagccagcca
      601 attagcttca ttaacttcag agcaagtaaa acaaaacctt gtagagtcag gcttatggac
      661 ggctttccgt acacgtccgt ttagcaaagt gcctgcatta gatgcagaac cttcctctat
      721 ttttgtcaat gcgatggata ccaatccact tgcagcaaat ccggaagtga ttattgcaga
      781 acaccaacaa gctttctttg atggcttaac tgtattaagt cgtttatttg aaagtaaaaa
      841 agtgattcat ctctgtggca gtgcagactc aaatatttta aatgcggcac aaagccgtca
      901 gatcaataat gtggaaacta accgctttaa aggtccgcac cctgcaggtc tttctggtac
      961 gcatattcac tttattgacc cggtaggtgc aactaaacaa gtttggtatt taaattacca
     1021 agatgtaatt gctatcggta aattatttac gaccggtgag ctatttactg accgtgtagt
     1081 cgcattagcc gggccacaag tgaaaaatcc acgtttggtg cgtactcgtt taggggcgaa
     1141 tctttcacaa ttaacagcca acgaattaaa tgcgggtgaa aaccgtgtca tttcaggttc
     1201 tgtgttaagt ggtgctatcg caacgggagt acacgactat ttaggtcgtt acgcattaca
     1261 agtgtctgct ttattagaag ggcgtgagaa agcgttcttc ggtatgattg ctccttactc
     1321 tgataagtat tcaattacgc gtactacttt agggcatttt gcgaagaaat tatttaactt
     1381 cacaacagca gttcacggta gtgagcgtgc aatggtacca acaggggctt atgagcgtgt
     1441 aatgccgttg gatatcattc caacactctt attgcgtgat ttagcagctg gagatacaga
     1501 ctccgctcaa gctttaggct gcttagagtt agacgaagaa gatttagcgt tatgtacttt
     1561 tgtgtgttcc ggtaaaaaca actggggacc attattacgt caagcgttag ataagatcga
     1621 gaaggacggt taaaaatggg tttgaaaaat ctttttgaaa aaatggaacc cgctttccat
     1681 aaaggtggaa agtatgagaa atggtacacg ctatttgaag ctgcctatac gattttctat
     1741 acaccgggta cggtcactcg taaagatgct cacgtgcgtg atgcgattga ctctaagcgt
     1801 atgatgttaa ttgtatggtt agcgttattc cctgcgatgt tctacggaat gtacaatgtt
     1861 ggtgcacagg gtattctagc ggcactcaaa atgggaacat taacggattt agttgctaac
     1921 aactggcact acagcttagc cgatagttta ggctctgtag ctgatgcagg ctggggaact
     1981 aaaatgttgc tgggggcaac ctatttccta ccaatctact taacagtatt tgcagtgggc
     2041 ggtttctggg aagtggtgtt tgcaatggtg cgtaagcacg agatcaacga aggtttcttt
     2101 gtaacctcta tcttactagc attaattgtt cctccaacat taccgttatg gcaagcagcc
     2161 cttgcaacta cctttggtgt tgtggtcgca aaagaagtgt tcggtggcgt gggtaaaaac
     2221 tttatgaacc ctgcgttagc cggtcgtgct ttcttgttct ttgcttaccc gggtcaaatt
     2281 tcaggtgatg cagtatgggt tgccgcagac ggcttctcag gtgcaactgc actttctcaa
     2341 tgggcagttg gtggtcaagg tgcattacag cacgttgcaa ccggtgaaac cattacttgg
     2401 atggatgcgt tcttaggtaa tattccgggt tctatcggcg agacctctac cttaatgttg
     2461 attattggtg ctgcaatcat tgtatttgcc cgaattgctt cttggcgaat tattgccggt
     2521 gtaatgattg gtatggcggc aactgcgaca ttatttaatg taatcggttc tgataccaac
     2581 ccattattct ctatgccttg gcattggcat ttagtattag gcggttttgc gatcggtatg
     2641 ttctttatgg caaccgaccc ggtatcagct gcatttacca acaaaggtaa atgggcatac
     2701 ggtatcttaa tcggctttat gtgtgtatta atccgtgtgg taaacccagc ataccctgaa
     2761 ggtatgatgt tagcgatctt atttgctaac ttatttgctc caatctttga ctatttagta
     2821 gttcaaggga atatcaaacg cagattagcg agggtagcaa acaatggcta aatttaataa
     2881 agatagcgtt ggcggaacgc taaccgttgt agttttatta agtttaattt gttctttgat
     2941 tgtggcaggt gcggcagtaa tgcttaaacc aacacaagat attcagaaac aacttgataa
     3001 acagaaaaac atcttacaag cggccggttt attgcaaaaa gataccaatg tgcaagaaac
     3061 ctataccaaa tttattgagc cgaaaattgt cgatttagca acaggtgatt acgttgaggg
     3121 tgtaaccggt tttgatgctc gtgcagcagc taaagatcct gctcaaaatg tagttatcgc
     3181 acctgaagat gataaggcga atatcaaaac gcgtgctaaa tatgctgaag tttatttagt
     3241 aaaagatgaa tctggcaaaa cgactcaagt agtattacca atgcacggta acggcttatg
     3301 gtcaattatg tacggtttcg ttgcggtaca acctgatgca aataccgtta acggtattac
     3361 ttactatgaa caaggtgaaa cggcaggctt aggtggcgaa attgcaaacc cgaactggca
     3421 gaaaaacttt gtaggtaaaa aactgtataa cgagcaaaac caagttgcgt taagagtggg
     3481 taaaggggca tctgcagata aagatcacgg tgttgatggt ttatctggtg caacattaac
     3541 ctcgaacggt gttgatggtt cattcaaata ctggtttggt caaaatggtt ttggtccata
     3601 tttagcaaaa tttaaagcag cggcaggagc taactaatgg cagacaataa caatcttaaa
     3661 aaattattgt tatcgccaat tgtcgataac aacccgatcg cattacagat cttaggtatt
     3721 tgttctgcgt tagcggtaac gactcaatta caaacagcag tagtaatggc gattgcggta
     3781 agtttagtta ctgcattctc aagtatgttc atttcaatga ttcgtaacta tattccaaat
     3841 agtatccgta tcattgtgca aatggcgatt attgcatcat tagtaatttt ggttgaccaa
     3901 atcttacgcg cttatgctta cgatctgtca aaacaattat cggtattcgt aggccttatt
     3961 attaccaact gtatcgtaat ggggcgtgca gaagcattcg cgatgaaatc aggcccggtt
     4021 gaaagttttg ttgatggtat cggtaacggt ttaggctacg gtgcaatgtt aattatcgtt
     4081 gcctttttac gtgaacttat cggttcaggt aaaattttcg gtatcaccat tcttgaaact
     4141 gttcaaaatg gcggttggta tcaagcaaac ggtttattct tattagcacc aagtgcgttc
     4201 tttattatcg gatttgtgat ctgggcgatt agaacgtgga aaccggaaca agtggagaaa
     4261 taagatggaa catcttctga gtatctttgt taagtccata tttattgaaa atatggcact
     4321 ttctttcttc cttggtatgt gtacattcct tgcggtgtct aagaaagttt caactgcttt
     4381 tggtttaggt attgcggtaa ttgtagtact tggcattgca gttccagcta accaattagt
     4441 ttatacccac gtattaaaag agggtgcatt agtagaaggt gtggatttaa gcttcttaaa
     4501 ctttatcact ttcatcgggg ttattgcggc acttgttcaa attctggaaa tgattttaga
     4561 caagtttttc ccggcacttt atagtgcatt aggtatcttc ttaccactta tcaccgtaaa
     4621 ctgtgcgatt tttggtggtg tatcgtttat ggtacaacgt gagtataact ttgtagaatc
     4681 tgtggtttat ggcgtaggtg caggtacagg ctggatgtta gccatcgttg cccttgcagg
     4741 tttaaccgag aaaatgaaat attccgacgt gccggcaggc ttacgtggtt taggtattac
     4801 ctttattacg gtaggcttaa tggcgttagg ctttatgtca ttctcaggca ttcaattata
     4861 aggagcatat cgtggatagt aattttattt tcggtattat cgcatttacg gctctggtat
     4921 tagtgcttgc ggtgatcatt cttttcgcta aatcaaaatt agttgattca ggtgatatta
     4981 ccatctcaat caacaacgat ccggaaaaag gcattacgct accggctggt ggaaaattac
     5041 tcggtgcttt agcaagtaaa gggattttcg tttcgtcagc ttgtgggggc ggtggctctt
     5101 gcggtcaatg taaagtacaa gtgaaatcag gcggtggtga aattcttcca actgagttat
     5161 cgcacatttc taagaaagaa gcgaaagaag gctggcgttt agcttgtcag gtaaacgtga
     5221 aatcttcaat ggacgttgaa cttccggaag agatctttgg tgtgaaaaaa tgggaatgta
     5281 ccgttatctc aaacgataac aaagcaacct tcatcaaaga gcttaaactt caaattcctg
     5341 aaggcgaaga agtaccgttc cgtgcgggtg gttatatcca aattgaagct gaacctcata
     5401 ccgttcatta taaagacttc gatattccaa aagagtacca cgaagactgg gataaatttg
     5461 acttatggcg ttatacttca aaagtggacg agcatattat tcgtgcatac tcaatggctt
     5521 catatccgga agagaaaggc attattatgc ttaacgtgcg tattgctaca cctccaccac
     5581 gcaatccgga cgtaccgccg ggtcaaatgt cttcctacat ttggtcatta aaaccgggtg
     5641 ataaagtaac aatttcaggt ccattcggtg agttcttcgc taaagatacc gatgcggaaa
     5701 tggtctttat cggtggtggt gcaggtatgg caccaatgcg ttcacatatc ttcgaccaat
     5761 taaaacgttt aaaatctaaa cgtaaaatgt cattctggta tggtgctcgt tctgagcgtg
     5821 aaatgttcta tgtggaagat tttgatggtc ttcaagcaga aaacgataac ttcaaatggt
     5881 atgtggcact ttctgatcca ttaccgggcg acagagaaga ttacttccgt ggctttattc
     5941 ataacgtgct ttatgagaac tacctcaaaa accacgaagc acctgaagac tgcgaatact
     6001 atatgtgtgg tccaccggtg atgaatgctg cggtaatcgg tatgctgaag agtttaggtg
     6061 tagaagacga aaacatctta ttagatgact ttggtggttg ataaacctta acttctgact
     6121 acaagcggtc aaatttgcaa aattgaccgc ttgatttaat ttatattatt aagttttggt
     6181 aatttaataa tgtgaatttt aaggggaagc aaatggaaca actggatatt acggtacttg
     6241 aaaatgcctt caattccctt gagaaaacga ttgtcagcct tgagaatcaa gcgtggttta
     6301 accggcaaga agcaattatt caagacactt tgattgcagg agcaatccaa aaatttgaat
     6361 ttgtttacga attgtcgata aaaatgctca agcgtcagct caaaaacatt gagtcaaatg
     6421 acactgatat tgatagcacc gagttccgtg atattttgcg aatggctgct caatatgggc
     6481 tgattgaatc accggaagtt tggctggatt atcgcaaaat gcgaaatatt acttcgcata
     6541 cttatgatca aaataaagca cagcaggttt ataacggaat ttcaaacttt ctggaaagta
     6601 cgtatttttt agttaaacag ctccaaaaac gcaatagcta tgattgattt aactgagtca
     6661 caacgccaac aggtgttgga tattttcaaa aaatacttgc ctgatacacc cgtttgggtt
     6721 tttggctctc gcattaaagg cacagccaaa gcctattcgg atcttgattt agcattaatc
     6781 accaaacaac cgctcacaat tcggcaacaa acagagttag agcttgcgtt tacggattct
     6841 gacctacctt tcacagtaga tctgattgac tgggcaagtt gcaacgaatc gtttaaacaa
     6901 attattttac agcgatatga agtgcttatt taatcgctaa atatgctata atttccccaa
     6961 tttttaactt ttgtgacacc aatgaaaaaa ttttttcttc ttttaattgc tttttttact
     7021 ttaagtgctt gtgaaaaagc ccctgagcaa attacgctgt caggcaaaac catgggaacg
     7081 acttacaccg taaaatatat tgataatggt gaagtggaga atttgatttc gcctgaaaaa
     7141 atgaaaaatg agctggatgg cttattgatt gaggtgaata atcagatgtc cacctaccaa
     7201 caagattcgg aaattagccg ttttaatcaa gcaaagcagg caaatcaagc ggtcgaaatt
     7261 tcgcaggatt ttgcaaaagt ggtacaagag gcaatccgtt taaataaagt aaccgaaggg
     7321 gctttagatg taaccgttgg tccattggtg aacttgtggg gcttcgggcc ggataaacgc
     7381 ttaaataaag tgccgtctga tgaacaaatt gcagagcgtt ctgcttatgt cggcattgat
     7441 aaaattttgc ttgaaatgag tagtaaaccc aagctcacca agtcagcagc taatctttat
     7501 ctagatttat cgtctattgc aaagggtttc ggtgtagata aattagccga gcatcttgaa
     7561 actataggtg tgagcaacta tttagttgaa attggtggcg aattacgagg caaaggaaaa
     7621 aatttacaag gcttagattg gcggattgca atcgagaagc cggtaatgac acaaggtcaa
     7681 gccgcacaaa ttaccgtgcc gttgcacaat ttggcgatgg caacttcggg caattatcgt
     7741 aattattttg aagatgaaaa aggcaaccgt ctttcacata ttatcgaccc aaaacagtta
     7801 cgtccggtaa accataattt agcctctatc accgtatttg ccccaactac aatgacggca
     7861 gacggcttat caaccggttt atttgtttta ggagcggaaa aagcattagc agtggcagag
     7921 cgtgaaaaat tagctatttt tttaattgtt aaaaacggcg ataaatttga gacacaaatg
     7981 tcgagcgaat ttagcaaact tattcaatca caatagttgg agtgaaaaat ggaaactgta
     8041 ttattaacct ttggcttttt tgtagccgta atttttgcga tgtcgattgg ttttatcgtg
     8101 aaaggcaaaa ccatcaaagg cagctgtggc ggtatcaccg ctttaggtat gaaaaaaatg
     8161 tgcgactgcg aagaaccttg cgataaccta aaatctaaaa tcgcagacgg cacagccgac
     8221 cctgaagaag tggcacgttt taataaagag ccacaatttt atgaagtgaa ataatatgaa
     8281 tagagatatt cgctggaaac agcggtttga taactataaa aaatcagtaa gttaccttca
     8341 agcagaagca gaaaaatacg ctgataccga cattgatgta attaaaaaag gaattatcca
     8401 gagttttgag attacacacg agttagcgtg gaagttaatg caagatattt taaaatggga
     8461 aggtgaagtt gatatttatg gttcaaaaac ggcttctcgt ttggctttta atcgtgggct
     8521 aatcactcag ggcgaagttt ggctagaaat gataaaaagc cgcaatataa cagttcatac
     8581 tgacgatgaa actattttaa ctgaagaatt taataaaatt atcaaggcgt atctgccttt
     8641 atttattgaa tttgaacagc gagtagaaac actatgccaa actttggact aagcgaacga
     8701 gcgacgaaaa ctattaccga tattcttgcg aaataccctg aagtggagca agccattatt
     8761 tacggctcgc gtgctaaagg taattatcgt gaaggctcag atgtagatct tacttttaaa
     8821 ggaaaagatc ttacttacga tattgtcaaa cgcatttggg gtgatttaga cgattccgac
     8881 tcgccctatt tatttgactt gtcgatttat catcaattaa ccaatgccaa ctttattgaa
     8941 catattgata gagtaggaaa agtcttttac caaagagaac tctaatttct taataggcaa
     9001 gcggttcatt ttgcaaaatt ttttgcaaat ttcaccgctt gttgttttta ttattaacca
     9061 atgtgcttcg ccttaaccga agttacggga gatttatgac aactcaatta acctcaaaaa
     9121 cctacgacac tcatttccct aaattaaccc cagaacaact tgctgaaaac agcaagaaaa
     9181 aagtcattat cggtatgtcc ggtggggtgg attcctcggt ttccgctttt attcttcaac
     9241 agcagggcta ccaagtggaa ggcttgttta tgaaaaactg ggaagaagat gatgatacgg
     9301 attattgtac cgccgccgcc gagcttgccg atgctcaagc ggttgccgat aaactgggta
     9361 tgaaactgca taaaattaat tttgcagcgg aatattggga taatgtattt gaatatttct
     9421 tggcagaata caaggcagga agaacgccaa atccggatat tttgtgtaat aaagagatca
     9481 aatttaaagc ctttttggaa tatgcggcag aagatcttgg tgcggattat attgcgaccg
     9541 ggcattacgt ccgccgtacg agcgatgatc aagatgcgaa acttttgcgt ggcttagatg
     9601 aaaacaaaga tcagagttac tttttatatg cgttaaataa aaagcagatc gggcagagtt
     9661 tattcccagt gggtgaaatt gagaagccga ttgtgcgagc cattgccgaa gacctaggat
     9721 tagcaaccgc aaagaaaaaa gattctaccg gcatttgttt tatcggtgag cgtaaattta
     9781 aagatttctt agctcgtttt ctaccggctc aaccggggga aatccgcacc gttgagggca
     9841 aattagtcgg tcgccatgat gggctgatgt atcacacgct tgggcaacgc aaaggcttgg
     9901 gtatcggtgg ggtgaaaggg ctaagtgaag atccgtttta tgtggtggag aaagacttaa
     9961 ttaacaatgt attgattgtg gcacaaggac acgataattc agccctgctt tcaagtggct
    10021 taattgcgaa acagctcact tgggtggata tgcagccgtt gcgtgaaaat ttacgctgca
    10081 cggtaaaaac ccgttatcgt caagcagata ttgcgtgtga aatccaagtg attgatgatg
    10141 aaaccattcg agtgatgttt gatgaaccgc aaattgccgt gacgccgggg cagtctgccg
    10201 tgttttactt aggtgaagtt tgcttaggcg gtggcattat tgagtcacaa ttaaaatagt
    10261 tataaataaa tattgaaata ttttgcatat ttatgcaaaa taagcgaaaa gttaaggcgg
    10321 taaaacgcct ttttcatttt gatcgataca aagaataata tacaaggaac agactgtggc
    10381 actttggggt ggacgcttta cacaacaagc agacgcaaaa tttaaatatt ttaacgattc
    10441 attacgtttt gattaccgct tggcgattca agatattgaa ggctcaatcg gctgggcaaa
    10501 agccattact tcggtaggta ttttaacggt agcagaatta gaacaactaa tcgcagcatt
    10561 aaaagaggtg agagcagagg tagaatctaa ccttaccatc atcttaaaag atgatgcgga
    10621 agacattcac agctgggttg aatctaagct gattgaaaaa gtgggcgatt taggtaaaaa
    10681 attgcacacc gggcgtagcc gtaatgacca agtagcggtg gatattaaaa tgtggtgcaa
    10741 ggtgcaagcg gtggcattgc aagaaagaat ccgagctttg caagagcgtt tggtttccgt
    10801 tgccgaagaa aatcaagagt cggtgatgcc gggctatacc catttacaac gagctcagcc
    10861 tgtgaccttc gctcattggt gtatggcgta ttatgaaatg ctagaacggg atttcagccg
    10921 tttgagtgat gctaataaac gtatgagcac ttgcccgctt ggttcagggg cattggctgg
    10981 tacggcttac ggcattgatc gtgacttatt agcccgtgat ttaggctttg aagaagccac
    11041 acgcaacagt ttagacagcg tgtcagatcg tgaccatatt ttagagctgc tctctactgc
    11101 ctcgatcagt atgatgcacc tctctcgctt tgctgaagat ttaatcattt ttaatagtgg
    11161 cgaatcaggc ttccttgaaa tgtcggatcg tgtgacctca ggctcatcac ttatgccaca
    11221 gaagaaaaac cctgatgctt gtgagctgat tcgtgggaaa tccggtcggg tatttggggc
    11281 attaaacggt ttattaacta cactcaaagg gttaccactt gcttataata aagatatgca
    11341 agaggacaaa gagggtattt ttgatgcgtt ggaaacttgg caggcttgtt tagaaattgc
    11401 agaacttgta ctggttgata ttcaagtgaa taccgaacgc acccgagaag ccgctcagca
    11461 aggttatgcg aatgcgaccg agttggcaga ttatttagtg gcgaaaggcg tgccattccg
    11521 tgaagctcat catattgttg gcgaagcggt ggtttacgca atcagcaaaa aagagccact
    11581 tgaagcatta agcattaacg aattccagca attccatcat tcgattggcg atgatgttta
    11641 cccaattctc tcgttagaat cttgcttaga aaaacgttgt gccaaaggtg gagtgaaccc
    11701 acaacgtgtg gcagaggcga ttgcggtagc caaagccaat ttagcttcaa agtaaaaccg
    11761 gatacaagcg gtcatatttt gcaaaaaaat tgaaaaatat gaccgcttgc cgattaaatt
    11821 ttcaattttt tacgcattaa gattgcaaaa taggcattac ctctttaaac ttccgaataa
    11881 tttttgaatt ttatttctac tactttcttt aaagagtttt atatgacgga atcagttaat
    11941 tctactcaag ctggtacagc actttcttta gggcaacaat taaaagcggc tcgtgaagcg
    12001 ttaaatctct ctattacaga tgttgctcaa aaaaccaact taaaaaaatc acatattgaa
    12061 tcacttgaaa atgatatctt tattctacaa aatgttgccc caacttttgt gcgtggctat
    12121 gtgcgtaatt atgtgaaatt tttgcgttta cctgaatccc ttatttcgag cgttaattat
    12181 ggtgaagtca ctattccaaa agaagtcact aaagtttctt cagtaaaacc ttcatcaaat
    12241 tcacaaggta aaaccttaaa gtatttaacg gtattagtat tgcttgcggc attaggaatg
    12301 acattacttt ggtggtggca agggtatcaa aaagaacagg aaaatcgcga gcaatttgtt
    12361 agctctgcac cagttgctga agtggcgaat accgctacaa ataatgatgc ttcagcacaa
    12421 acttccgtgc ctgttcagca acctattcag gtttcagagc agcctgctca agtagcagaa
    12481 acggtagttg cagcagaacc ggcattaact gaaaaagtag agcctacaca agcagcatca
    12541 tcacctgtaa cacaagaaga tgttaaagtg gtagaagaag ttaaacaagc tgatgccacc
    12601 actgcacagg ttgaggcagt taatgtttta cagcaatctc aatcggaaca agcccctaca
    12661 gaacagcctg ttgcggtaac gaatgatgag cttcgtatcg aaattaccgg ttcacaaagc
    12721 tggattacag tgcggggtgc taaaaataaa cgtttagcag aaaaattata taacaatggt
    12781 gagactttaa gtttcaatga gaatgagcaa tatcgtttaa ccattggtgc gcctgccaat
    12841 gtaaaagtgt actataaagg tcaagaagta ccattgaaaa ttgatgggcg tgtagctcgt
    12901 attcatttac cgttacagta agcttgattt aacgatgaaa cgcacgtaaa gctagcattt
    12961 aacgatagct gtctttacga gcgttttctg tttttataaa ttttcacaat tagctaaaaa
    13021 tatgatacat caatcaccta ttaaacgtcg ggtatcgaag aaaatctatg tgggtaatgt
    13081 gcctgtaggc ggcgatgcac cgattacggt tcagtcaatg accaacaccc gcacaaccga
    13141 tgtggaagcc accgttgctc aaattaaatc gctggaacgg gtcggggctg atattgtgcg
    13201 tgtgtctgtg ccgacaatgg acgctgctga ggcatttaaa gcgattaaac aacaagtgag
    13261 tgtgccattg gtggcggata tccacttcga ttaccgcatt gcgttgaaag ttgccgaata
    13321 tggggtggat tgcttgcgga ttaacccggg taatatcggg aatgaagagc ggatccgcac
    13381 ggtggtagat tgtgccagag ataaaaacat tccgatccga atcggggtaa atgccggatc
    13441 attagagcgt gatttgcagg aaaaatatgg cgagccgaca ccacaggcat tattagaatc
    13501 ggcattacgc cacgttgatc acttagatcg ccttaacttt gatcaattca aagtcagcgt
    13561 gaaagcctca gatgtatttc tagcggttga atcttaccga cttcttgcaa aacagattga
    13621 tcagcccctg catttaggta ttactgaagc aggcggagcg agagccggtt cggtgaaatc
    13681 ggcggtaggc ttaggtctgt tgctagcgga agggattggt gataccttgc gtgtgtcatt
    13741 agcggctgat cctgttgaag aggtgaaagt cggttttgat attttgaaat cgctgcgtat
    13801 tcgctctcgt gggatcaact ttattgcttg cccaacctgc tcccgccaag aaattgatgt
    13861 gattgcgacg gtaaacgagc tagaacaacg tttagaagac attatcacgc cgatggacgt
    13921 ttcgattatc ggctgtgtgg taaacggtcc aggagaggcg ttggtgtctg atttaggggt
    13981 aaccggcagc aataaaatga gcggctttta tttagatggc gttcgtcaaa aagagcgttt
    14041 tgacaacgca aaattaatcg accaattaga agctaaaatt cgtgccagag ttgcacaaca
    14101 acataatcgt atagatattg aacaaatagg ataaatatag tggcaaaaac aattcaagca
    14161 attcgaggaa tgaacgactg ctcaccaagt gagtctccat tatggcaatg ggttgaacag
    14221 aaagtgcgta atgtgctggc aagttacggc tattcggaag tacgtatgcc gattgtagaa
    14281 agcactccgt tatttgcccg tgccattggc gaagtaaccg atgtggtgtc gaaagagatg
    14341 tacacgttct gggataacga tgagcaatta acgctccgcc cggaaggtac agccggttgt
    14401 gtgcgtgcag cgattgagcg tggttggatc tacaataatg agcaacgctt atggtatatg
    14461 gggccgatgt tccgccacga acgtccacag aaagggcgtt accgccaatt ccaccaagcc
    14521 ggtgttgaag tgtttggcat tgcaaatccg gaaattgatg cggagttgat tattctcacc
    14581 gcacgcctat ggaaagagtt aggcatcgat caacatgttt ctttgcaact taactctatc
    14641 ggctcgttag aagctcgtgc aaattatcgc tcagcattag taaaattttt agaaaatcac
    14701 accgctttaa tgaacgaaga agagaaagag cgtttggtga aaaacccgct acggatttta
    14761 gataccaaaa acgaagcact acaaaatgta ttaaacgatg ccccaaaact gctcgattat
    14821 ttagatgatg acagccgtga acattttacc caactttgtg ccttacttga tgcaatggga
    14881 atccgttacg aagtcaatcc aaaattggtg cgtggtttag actattacaa taaaaccgtg
    14941 tttgaatggg tcacttcagc cttaggctca caaggcaccg tatgtggcgg tgggcgttat
    15001 gacggcttag tcgaacaact cggtggacac gcaacccaag gcgttggctt tgcaatgggc
    15061 ttagagcgtt tagtgctgtt ggtacaagag gtgaataaag agattgattt accaaaaacg
    15121 gtggatgtgt atatcgtatt ctccggtgaa ggggcaacac taaatgcctt ccaacttgca
    15181 gagcagattc gtagcgaatt gccacacgtt ggcgtaatga cacactgttc cggcggtaaa
    15241 ttccaaaaac aatttaagcg tgcagataaa gtagaagcgc aaattgcgtt agtgattggc
    15301 gaaagcgaag tggctgaaaa gcaagttgtt atcaaagatt tacgttcagg agcagaacaa
    15361 atcacgattg ctcaatcaga gctgattgct gagctatcta aacgatttta ggagaaaaag
    15421 atgagtaacg aatatttaaa taaaaccgaa gagcagcaat ttgaagatgc caaaaattgg
    15481 tttaaagaga acgggacacc gattttggtg gcgattattt tagcttgtgc ggcaactgcc
    15541 ggctggaatt tttggaaaaa tcaccagctt gaaacggcac aaaaaacatc cgcttcatac
    15601 caaagcgtga tggagagtta tttgcaaaat ccaagcaaaa atcaaccgct tgttgagaaa
    15661 tttattgccg ataataaaga ttcaagctat gccgcttttg cccaatttga agtagctaaa
    15721 caagcggtcg aaaaagggaa tttttctgcg gcaaaaacag cgttacagtc agttttgact
    15781 tattcggatt caaccttaca atctatcgct cgttttcgtt tggctcaaat tgacttccaa
    15841 ctaaaatctt acgatgaagc actggcaagt ctggctcaaa ttcaagataa agcgtgggaa
    15901 ttgcgtaagc aaattctaac aggcgatatt cttgcagcaa aaggcgatat tcctgcggcg
    15961 aaaagtgctt atgagcaagc taaaacgacc gcaaatcctc aggaacaaac cttaattgat
    16021 gtacgtttga ataacttata aaaacaaagc ctgattgaaa taaaatcaat caggcttttt
    16081 tgttggttta gtgttgctgt gaattataaa cgcattggca taatcacata ttcggcagag
    16141 ctgttgtcgc aatcttcaat taagcaacta gaacttgaat caactaagct aaaacgcaca
    16201 cgttggcatt ttaaggtgtt taacacatct aatacatagc taacgttaaa gccgacttcc
    16261 atttccgggc tgtcgtaggc aacatcaatg atctcttccg cctcttcttg ctccggattg
    16321 tttgcggtaa ttttgagtaa attattgctt aaggttaaac gcacccctct aaatttctca
    16381 ttagaaagaa tcgctgcacg cattaatgcc cgtttaaggg tttcggtttc cgcttctaga
    16441 atgcgatctg cattgcgagg cagaactcgg cggtaatccg ggaatctgcc atcaatcagt
    16501 ttagaggtaa atacaatgcc gttcattgta atacggatat tgcttgaacc gatttccaaa
    16561 cgcacggttt catcgttgct ggcaaccaag cgggaaagct caagtacggc tttgcgtggc
    16621 acgataaccg aatgagtcaa aagctcttga tttagcacca ttgtgcaaac cgctaaacgg
    16681 tgcccatctg tggcaacggt gcgtaataaa ttgccttcgg tttcaaattt cattccgttt
    16741 aagaaataac gggcgtcttg gtttgccatt gagaattggg tggcatcaat cagacgggca
    16801 agggtagatt gatcaatcga gaaatccact tccggtttcc aatccatcaa attcgggtaa
    16861 tcacttgccg gtaatgtagc taaactaaat ttactacgtc ctgctttgat aatggcttta
    16921 tcttcttcaa attgtaccga aatcacgctg tcatcaggta ggcttttact gatatctagg
    16981 aattttttag ctggaatggt aaattttccg gcaaaatcga ccgcttgtag cagttgtgct
    17041 tgggtggtta attccacttc taaatcggta ccggttaaag atagacgatt accttcaatt
    17101 tctaataaaa gattgttaat aacaggcaaa gtcggacggc tacttaatac gccacacacc
    17161 tgttgtaaag gcttaagtaa ttgttctctg gtaatggtaa tttgcataat cattccttca
    17221 tcgggctaag atgataattt gcgtgttaaa tggatataat cttcttggat accgctttcg
    17281 gtatcgcgta attcattaat ggttttgcag gcgtgcatca cggtagtatg atcccgaccg
    17341 ccaaattccc gaccaatttc cggcaagctg tggttggtta gctcttttgc cagtgccatt
    17401 gccatttggc gaggacgggc aatgcttctt gcccgacttt tcgatttaat atcggcaact
    17461 tttatgccgt aatattcggc cacaatgcgt tgaatatttt caatcgtaat caagtaatca
    17521 aaagaggcaa acagatcttg caaggtttca cgcaccgcat caaccgtaat cgggcgaagg
    17581 gtcaattttt gccacgcaat cacacggttt aatgctccct ccaattcacg cacattggtt
    17641 cggagttttt gccccattaa ataggcggca tcttcttgca aatctgctcc acgttctaag
    17701 gctttttggc gaagaattgc cactcgggtt tccaattcag gtggctcaat ggtcgcacta
    17761 ataccgccgc ttaaacggga tttaatcgct gtgtcaattt tatcgatatt ttttggcaaa
    17821 acgtcagagg ttagaataat ctgctttctc tgctcaaata aagcattgag tagatgtaaa
    17881 aactcttctt gtactttcgg tttattggca agaaattgaa tatcgtcaat cattaacaca
    17941 tcaagcgagc ggtagaattt tttgattttt tccgcatcgt tattggaact gttgatcgcc
    18001 ttaataatat cacgataaaa acgttccaaa tgaatatata gcacccgagt acccggtgtg
    18061 cgtttaacta attcattgcc gatagcgtgt aataagtggg ttttgcccaa accggtgccg
    18121 gcataaaacg agagtgggtt gcaatggctt tcgcctaaat tatccaccac ttgttgagcc
    18181 actaatttag ctaattggtt tgagcgacct tgtacaaaat tatcaaaggt ttgatttgga
    18241 tttagcccgg ttttaaagcc ggtattgctg aattctgaac tctcgttttt tagatttggg
    18301 ctgacctttg gctgttctgt cggtttaatc ccaactttta acgtaaccac caaattatca
    18361 tttttcgcca aaaaacgggc aagctcggta atttccgata aaaatttatc ttttacccag
    18421 ttttcaacaa attgattttg tgcataaagt gtaagttccc cattctcaga actcgcttgc
    18481 agaggacgca gccaagtgct gtaatcagtt ggtgagactt tcgtttgtaa gtgattaagg
    18541 caatcagacc aaagggaaga cacaatttgc tccaaaatta ttgttattaa aggtcataat
    18601 gatacctgaa aaaaggggag aaatcttgca aatttttgag agattttatg ggggcttgga
    18661 agcgatttta attggcgaac aagcggtcgt tttttgttga aatcttgcaa attgctaaca
    18721 aaaaatgacc gcttgcttag tatgatgtgt gatggagttg attaaatatc cgtattctcc
    18781 ggcaagaacc caccgctttg gtgagcccaa agtctggcgt aaacaccgtt ttgagcaagc
    18841 aattcttcgt gcgtgccttg ttcaacgatt tcgcctttat ctaacacgat aagtctgtcc
    18901 attgccataa tggtagagag gcggtgggca atcgcaacca cggttttacc ttccattaat
    18961 tgcgtgagat tttcttgaat tgccacttct acttcagagt ctaacgcact ggttgcctca
    19021 tcgagtaata aaatcggagc gtcttttagc atcactcggg caatcgcaat ccgttggcgt
    19081 tgtccgccgg aaagttttac ccctcgttcg ccaacgtgtg catcaaaacc ggttctgcct
    19141 ttggcatctt gcaggtttgg aataaattca ctggcggcag cttgttcaac ggctttgatc
    19201 atctcttctt cagtggcgtt tgggcgaccg tacatcaagt tttcacgcac agagcggtgt
    19261 aacagcgagg tgtcttgagt tactaaacca atttgtgagc gaaggctttc ttgggtaata
    19321 tcacggatat tttgcccgtc aatcgtgatt gaaccgtctt gaatatcgta aaaacgcaat
    19381 aataaattgg tgagcgttga tttacctgca ccactacgcc cgactaagcc gactttttcc
    19441 cccggtttta tagtgaggtc aaaatctttc agtagcggtt ttttcggatc gtaggcaaaa
    19501 tccacattct caaatttaat ttcgcctttg gttacattta acggtttcgc atcgatttta
    19561 tctaccacat tgtgtggttt ggaaagcgta atcataccgt cttgtaccgt acctaaattt
    19621 tcaaatagac gagcaaattc ccacataatc cattgtgata agcctttaat gcgtaaagcc
    19681 aaagcggttg aggtggcaat cgcccctgca gttactacgc ttgaacccca aagccataaa
    19741 ccgatacccg cagttgaaat tattaatgcc atcgaggtta gattagttac ggtttcaatt
    19801 acagtcacta aacgcatctg tttatgcact gtcaccataa atccttccat cgactctttc
    19861 gcataggcag attcacggtt gccgtgcgag aagagtttga cggtggcaat gttagcgtaa
    19921 gcatcggtaa ttcgaccggt cattaaactt ctggcatccg attgctcttg agcagcttgg
    19981 gctaatttcg ggacaaagta gataatggtt gccgctaatg agatgaccca taaaataaac
    20041 ggcacgaata accagccgtc aagttgtaat aaaatcacgc tggaggtggt gaagtaaacc
    20101 agcacataca ccaacatatc ggcacaagtc ataatcacat cacgcacgga aagggcggtt
    20161 tgcattactt ttgcagacac tcttcctgca aattcgtctt gatagaaacc taaactttgc
    20221 ccaagcatta agcggtggaa gttccaacgc aaacgcattg gaaatacccc ttgcagagat
    20281 tgaaagcgaa tgctgctggc aaggtaaaca aacaccactg caagtagggc aataaaaaac
    20341 ataccgataa tcgtccagcc tttttctgcc caaagttctg ttggcgagta tttattgacc
    20401 caatcgacta aatcgcccat aaagcgaaac agaaccgctt cgataatacc gacagctgca
    20461 actaatacgg tcagtagtaa gatataaaac cgcattcctt tagtggcatc gtaaataaaa
    20521 ggaatgagac ctgattttgg agttttcggc atttcatttg gataggtttc cacccttgcc
    20581 tcaaaccatt taaacagttt ttcaaacata aatttgtgat ttccgaataa aaatgcaggg
    20641 gcaaatagcc atttgccccc gaaaaaatgt gaaaaaatta tggattaagt aatttttcgt
    20701 ctaaggctaa atcttcgttg cgatttatac caatgccggc agctaatacg ttgcgggcaa
    20761 tttgatgtgc ttcttttaaa gaatgctctt tgtaagagcc acattgatat tcattcagct
    20821 cagggattgc cgatacatca ggaattttat gtaacgcatc ttccattgat gccgtccaag
    20881 ctttgacaac ttcttctgct gaaggcgatc caatcagtga catataaaaa ccggtacgac
    20941 aacccattgg tgaaatatca atgatctcca cttgttcgct attgaggtga tcacgcataa
    21001 aaccggcaaa aagatgttcc atcgtgtgaa tcccacgcac cggtagaata tcaatattcg
    21061 gacgacagaa acggagatcg aacacggtaa tggtatcgcc tttcggtgtg gtcattgttt
    21121 ttgcaacacg cacggctggt gcgttcattt tggtgtgatc tactttaaaa ctatctaata
    21181 aaggcatttt ttactccatc aatattattc cgcaattcct tgatcccaag ccggggcttc
    21241 atcaggtagt ttgcgctgta agaaaaatcg tctgtttggc tgggcttgag gcttcaccac
    21301 tttagtgtaa ggggtagaga actcaatacc gccatttaat aactgcgaca ttgtgccgga
    21361 gttcatactt acaccttgca ggctcacgtc catagtgtaa cctgaagctt gccagaattg
    21421 ggtattggtt ctgactaagt gcttgtattt atcttgaata ttgacataaa taagcactcg
    21481 atcgcctaac tcacttagcc ctaaacggct gactattccc acctgcattc cacggtaaag
    21541 caccggtgct tccggctgaa taccgttagc attggtggtt tcgacaataa tggggaaacc
    21601 gttggcatag gtggttttta ccgtatcggt atctgcaaga acaaattggt tttgagcttg
    21661 ccctgaaccg acatcaaccg taatgtaatt ttgtagtgct gcatctaaat ttttaaagcc
    21721 ggaggtactg atttcaggcg agataacatt aaatttactg ccggcttttg caattaacgg
    21781 atagtatttc ctttgaatgt aagcggtcgc ttttatctgt ttttttgcat tttgtagctc
    21841 aagtttttca atttgaccta cggttaagcc catatattta atgtccattc cttcgcttaa
    21901 cttactcgca tcttttgcaa tcagcgtgag ataagtattg cccgaagtgg ctttctcctt
    21961 acttgcataa agcgttttat tgccttttga accgccatca tcaaagctga tcgccccttt
    22021 taaggtacgc attaatggag ctgtagtgat attcacgcct ttgagtgaca catcaacact
    22081 cgttgccggc tcaatccaga aacggctttt ctcggttaat agatgacgat aatttggctg
    22141 gataaatagc tcaacctcaa atttttgttg tttcggggtt atttttaaca cctcgccgac
    22201 ctgaaaatca cgatatagca ccaaagagcc ttcgctgata ccagataatg aatctgccga
    22261 aagggtagtg gtggcttttt tatctaaggt agccatgcct gattccgcac tttctatatc
    22321 tttataaagt gcatattgtt ttttcgggct accgtcattt ttaccgttaa ttaagcgaac
    22381 accgcctttt aaccattcag atggtgaacc ggcgtgaact cttaacccat ctagccccac
    22441 cgacatatca atgttggata tcgcaacaaa tttgctgtta ctcccaatca ggttgcgata
    22501 aggcggataa ataatgacat caaaacgtac tttgtctaac tctaggctac gtttgacgat
    22561 ttctccgatt tgcacatcgc tatagtaaat cccctgattg gtatctaccc cataggcttg
    22621 aggagcaatt aagctaaagc taagtaaatt cggtaaactt aatagataat cggcttcgtt
    22681 ttgtaccaca aattccgatt gaggttctcc ttcccccggg tgaacctcaa aatagacacc
    22741 acgcagcagc tcacctactt tcgtcagctg ctctgtgttt aaggagaatt tcggctcttt
    22801 gagcaagatt ttagtttggg aacgtagtaa attttcataa cttgggtcaa ttaataaaac
    22861 cccatcaatc tgtttatgct gccctgattc ttgctgtggc acaccgttgt cttttacttg
    22921 cggtaatttt agctgcgaaa gcataccaat ttgcacattt tggtgaaaaa caccagtctc
    22981 attaattttt aaattatgtg taagcggtag ttttacgttg atttcaattc cacgtttagc
    23041 tgatttcaaa tccggatata gctcaaattt ctgtccttgc tcggcaattt ccatattatc
    23101 aggcgaatca aaagcaaccg caccttgtac taccgaggca aggctgtcca tattgatttt
    23161 aataccttgt aaatttacat cagcgctaat accgctaata ttccaaaatc ggctctcttt
    23221 ttttactaaa tgagcgtatt tttgattaat gacgacatca atttcgattt ttttctggtc
    23281 tttggtaaaa cgataatcgg caatattacc cactggcact ttacggaaat aaacactcgc
    23341 tccgacagta atagagccta tgtcatcaga gattaaacgg atcagtaaat cgccatcgct
    23401 cacggtaata gccggaggat cttcttctgc aataaattca tcaacgaaat cgccttcacc
    23461 gggaagtagg gtaatatagt taccagaaac aatcgcatct aagcctgaaa cgccagccaa
    23521 agaagcactt ggttgcacta accaaaattt agtctgtttg cgtaaaatac ttttggcttc
    23581 agggtttatt tctgcttgca cttccacttc ttttaaatta tcgacaaaat aaacacgctt
    23641 aacctgacca atctgcaagc cttggtaacg aatagcggtt tttccggcag taatgccatc
    23701 acctttacta aatcgaatcg tgattgtttc accttgctct tttaaaattt ggaaaaatag
    23761 caaagcacca ataataaaag caactattgg taacagccaa aaaggagaaa ttttgcgagg
    23821 ctgccggatt tgggcatcta caacagtgtg ggtattttct tccatcgtca ttttaaatta
    23881 gggaaaccta tatagaacaa taccgaagac ccaaagggac ttcggtaata gaaataagtc
    23941 aaaataagaa atattatttt ttctcatcac agttggttaa attactgcat ttaccataca
    24001 gatataaact gtggttagtc aattccattc cgtgtttttc actgatttca cgttggcgac
    24061 gctccatatc aggatcttta aattcgaaca ccttaccaca atccatacaa ataatatggt
    24121 cgtgttcgtg gttcatattt aattcgaata ctgctttatt cgcatcgaaa ttatggcggg
    24181 ttaaaatgcc ggcttcttca aattggttta agacacgata aaccgttgct aaaccaatgt
    24241 ctgagccttt ttctaacaga atcttataaa tatcttctgc tgcaaaatgt tgcatttcat
    24301 cacgaatatc ttgcattaat gcaaggatag tcaaacgagg ctcggttact tttaagccta
    24361 cctcttttaa acgtttaata tttgcttcag acatatatgc cacttattta tctttatcca
    24421 aaatagttat tatgcgagtt ggtctaagca catttcttct ttcaactgct cgcaccattt
    24481 attaacacgt tcagtggtta attcaggctg acgatcttca tcaatacata agccgacaaa
    24541 agtatcatca tcaactaagg cctgagaaac ctcgaaagtg taaccggcag ttggccaatg
    24601 accaacaatc acaccaccat ttggctctac cacatcacgc acagtaccca ttgcatcaca
    24661 gaaatattct gcataatctt cctgatcacc gcaaccaaaa attgcaacga ctttgccgtt
    24721 aaaatcaatc tcttttaggg taggcataaa atcgtcccaa tcggcttgcg attcaccata
    24781 ataccaagtt gggatcccaa acatcagaaa atcgtatgct tcaatatctt cttttgtgct
    24841 tttggcaatg tctcgaatat caattaattc agcccctaat tttttctgaa tcatttttga
    24901 aatattttct gtattgcctg tatcgctacc gtaaaataaa cctacaactg ccattgctac
    24961 tacctatttg tgagataatt atttagaatt gtttcaatta actgcccgcg tgaaacacct
    25021 tgttcagacg cctgttcctc taataacttt actaaattcg aatgcagttt taattctacc
    25081 cgttttaaac cggaagattt atctcgtttt agttggttac gtttattgat tcgaagttgt
    25141 tgttctctat caagaggatt tgtacgagga cgcccaactt ttggtacagt cgcaaacaga
    25201 tctaaggtta tacaatctga atcttgtttt gccattttgt tttactattg ggctttagct
    25261 aatcctcagt tttaatgaga atgataagct acttttaaag tgtgaactat atcaaaagtt
    25321 caatcatttg aaaagtaaat tacaggcaaa acaagcggtg tttttaggtt taaaatttgc
    25381 aaaaaccata aattacacat tatgagttat gatttttctg aagcgtgaaa ttagcttata
    25441 atgaaaccga ataacgttat gaaaaaggag atagtgtgtc gaatatccat ttagcgattg
    25501 ccgctgattt tacgctggca gaaaaattac ttgaagcatt agcaaatcaa gatttaggga
    25561 ttgaaaatat ttcagccgtt gagcttgagc cgtttggtga agagcagaat ttacgctttg
    25621 gggcaaaagc agtcgcacaa tatgcgttag atgaagtaaa ttgggcggaa tttagccatg
    25681 ttctatttgc cggcaaaatg gcacaagcgg aagtgttggc agaagcggtg aaagccggct
    25741 gtgtgatttt agatttatac ggcattaccg cactcatcgg cgatgtaccg gtagttgtgc
    25801 caagtgtaaa tgatgaaaat gtcgcaaatt tgcgtgagcg aaatatcgtt gctttagcca
    25861 atccgcaaat ttcacaactg gcgttagcct taaagccatt gttgaacgag ccgttaaaac
    25921 aggtgtgggt aacctcactt ttaccgtctg cctattttgg cgatgaaaaa gtcaaggagc
    25981 ttgccggaca aactgcccgt ttgttaaacg gcattccgtt tgatgaaaat gcggaacgca
    26041 ttgcctttga tgttgtgccg gctaatgtgc aaggagaaga gaaaagtctg ccgttctcaa
    26101 aagcctttga actgcaaatt gcaaaagttt taccaaattt gaccgcttgt actaccttcc
    26161 acagcgtgca agtgccggtc ttttatgggg tttcccaaat ggtgtcggtg cagtctgaat
    26221 atcagttaga tgctaatgcg ttaagtgaag cttggaaagc cgaaaattgg ctgaatttta
    26281 atgaaaattc agtgattaca gcggtgaaaa atggcgaaaa cgaagagcaa aatgcgttag
    26341 aaatcagtca gttattggcg aaatccgaac aggaagtgca gttctggacg gtcgccgatg
    26401 aacagcgttt cagtctggca tttttagcgg tgaaattact aaaattagtt ttagcgtatt
    26461 aagtgcttgc aaaagtattt attccgtgat aaaaatcgtc aacgcccgag caaccgattg
    26521 cttgggcgtt gtcattttgt ttaaacaccg aaggtcttat gttagaaaaa ttatttcagc
    26581 tcaaagcaaa aggcagtaat gtaaaaaccg aaattatcgc cggtattact acctttttca
    26641 caatggttta tattgttttc gtcaatccgt ctattttagg cgtggcggga atggacaccc
    26701 aagtagtgtt cgtgactact tgtttaattg ccgcttttgg tactatcgca atggggttat
    26761 tcagtaattt accgattgct cttgcaccgg caatgggctt aaatgccttt tttgcattcg
    26821 tagtggtgca aaaattaggt tactcgtggc aagtgggtat gggggcgatt ttcttaggct
    26881 ctgtcggctt attcctatta actgtattac aagttcgtta ctggtttatg tctgcgattc
    26941 cacttggttt acgtgtaggt attggtgccg gtatcggttt attcattgcc ctaatcggtt
    27001 ttaaaaatat gggcttggtg gtgccaaatc cggcaacgct tgtggcacta ggtgatttgc
    27061 acgacccgaa agtgttaatg gggattttag gctttttcat cattgttgta ttagcggcga
    27121 aaggtattca ctcaggcgtg ttaatttcaa ttgtgattgt taccgctctt gccttagcct
    27181 ttgacccggc ggtgagcttt aacggcataa tgtctatgcc accaagcctt ggggcagttg
    27241 tggggcaggt tgatattgcc ggtgcttttg atgttgcctt actcgggatg attttctcct
    27301 ttatgttggt aaacctgttt gactcttccg gcaccttaat tgcggtgact accaaagcag
    27361 gctttgcgga tgaacaaggg cgtttcccga aaatgaaaca agctctgcta gtagatagta
    27421 ccgctgcaat ggcaggctct tatatgggaa cttcagcgat ttctacctat attgaaagtg
    27481 gctccggcgt ttcagttggc ggtcgtaccg gcttaactgc ggtggtagtt gggatcttat
    27541 tcctattaac cattttcttc tcaccacttg cagggttagt acctgcctat gcaactgcgg
    27601 gggcattggt atttgtagga attttaatgg catctagctt aattgaagta aaatgggacg
    27661 atttaactga agctacgccg gcatttatta ctaccgcaat gatgccgttt acttactcca
    27721 tcactgaagg gattgcattc ggctttatca gctactgcgt aatgaaagcc tttacagggc
    27781 gttggaaaga aatcaacctt tctgttttag tggtttcact tctctttatt gctaaatttg
    27841 tgtgggtggg ttaagctcta cccccctctc cctgattttt cttctaaacg aagaaaaatc
    27901 tatccctctc ccacaaaggg gagagggtat ttgattcatt atctatgtgt ttcgtgtatt
    27961 ccgaggtaaa acaatgtcta attcagttca aaaacttctt tttatcatca attctgctcc
    28021 ttacggcaat gaaacgtttt tcagtgcgtt gcgtttggca ttacaaattc aagaacaaca
    28081 taaagccaat acggaaatta aacttttctt aatgtcggat gcagtcaccg cagggctggc
    28141 aaagcaaaat ccggcagagg gttatcatat tcagcaaatg ctggaaattt taaccgccca
    28201 aggggcaaac gtaaaattat gcaaaacctg tactaatgct cgagggatta cagatttgcc
    28261 tttagccgat ggggtagaga ttggcacatt aattgaactg gcagattgga caattcaagc
    28321 agataaggta ctgaattttt aatgcaaaat attgatgttg tggtgattgg tgccggtgcg
    28381 gcagggctgt tttgtgctgc ccaactgggg caagctggca aaaaagtggt ggtgttagac
    28441 agcggtaaga aagtcggacg taaaatttta atgtctggcg gtggtttttg caattttacg
    28501 aatttagacg taagtgccgg aaattacctt agccaaaacc gccattttgt gaaatccgcc
    28561 ctttcacgtt atacccaatg ggattttatt tcgcttgtca gccactatgg cattagctat
    28621 cacgaaaaag agctagggca gttgttttgt gatgaaagct cgcaacaaat tgtcgattta
    28681 ctacaagcag aatgcaacaa aggcaaggtt gagattctgt tacggcaagc ggtcatttct
    28741 gtggaaaaag ttgcaaattt ttttgaaatt tcgaccgctt gtggcaagtt ccaatccgaa
    28801 cacttagtga ttgcaaccgg agggctttca atgccggctc tcggggcaag cccttttggc
    28861 tatcaacttg ccgagcagtt tggtattcct gttgtgccac cacgtgcaag ccttgtgcct
    28921 tttacttgga aagagagcga taaatatttt gccgagcttt ccggcattgc actgccgatt
    28981 actgtttccg ccaatggcaa aagttttagc aatcagatgt tgtttacgca cagaggctta
    29041 tccggcccgg caattttgca gatttccaat tattgggaat tgggggaaac ggtagagatt
    29101 gatctgctac cttcgcagtc cattaccgat atattgagcg aactacgcca atcttcgccg
    29161 aaattacagc taaaaaccgt attatctcgt tatttaccta aaaaattggt tgaagtttgg
    29221 ctggaacaga aattgctgac cgataaagtg attgccgatt tgagtaaaaa agatctgacc
    29281 ttattagagc aatttatcca ccattggcat ttcttgccaa acggcacgga aggctatcgt
    29341 acagcggaag taaccaaagg cggtgttgat accgactata tttcatctaa aacgatggaa
    29401 gcgaaaaata cagcagggct ttattttatc ggcgaagtgc tggatgttac cggctggctt
    29461 ggtggttata atttccaatg ggcgtggtca tctgcttttg cctgtgcaga agggattatt
    29521 gaaaaaagca aataactaaa aaagcaaata actaaaaaac caaacaaaaa ggcgaacaca
    29581 attgttcgcc ttattttatg ctgaattatc ttgcacggaa aataatgcgt gctttgctta
    29641 aatcgtatgg agtcatttca accgttactt tatcaccggt taaaatacga atgtagtttt
    29701 tacgcatttt gcctgaaata tgtgcggtaa caatatgacc gttttctaat tccacacgga
    29761 acattgtatt tggtaaggtt tctaaaatcg taccttgcat ctcaatgcaa tcttctttag
    29821 ccatttattc ctctttaaag ttttaatttt tatatgatgc cattcggcga aaaacggcgg
    29881 atattatacg cttattcgct caaattacaa tcgtttatcc atttgagtgt aaactattta
    29941 cgcttaatcc aacggcgacg tgagtgaaaa cgctgggttt gggtttttac ttgactcata
    30001 agtggttttg ggcttatctg tacatgatga attttacgac gaaaatagta gttaatgcta
    30061 cttgccaaca atatacctgt gagtagcaaa ataattattt ccccataaag ttgatgaaat
    30121 tgttgctcta ctcgtgcttt agtagtttgc ccatattctg catcaaacgt gacgcgtaaa
    30181 aagccaacca acgcctgttg agaaaatatt ggctcaacaa tttgctgagt tttggcagat
    30241 tgctctgaat cgagcaatac ttttaaatct ttcgcatttt ggctttgagc cagtagcacg
    30301 ccatttggtg aatagatatt ggcatcaata ataaaatctt ctttggcaaa actatccaac
    30361 gcatcaacca gctcatcggt tttggcattt ttaactaaca aaaacgaaaa aatatttgct
    30421 tgctggcgaa ccaataggtg tgaaaggttt gatacttgat taatgctggc caattgtgag
    30481 cctagcttaa attggtttac gcccattaaa ataaccgcca cgatcccaca gcagagtagc
    30541 gtaatccctg ccagcaaaag cgttttcgtt attttttcac gactaatgta catcgaaatt
    30601 ccctcaaaat gatgcgtgat tgtagcacgc ttttctgtta gattagtgca gtaaatttaa
    30661 acaacctaaa ataagacaat gacaaacaca atttttatct attcaaaaac cttaaacgag
    30721 cgtgaaattg aacagttttc acaacaaacg gcagcaattt tgctgaaaca agcggtctat
    30781 ttagactaca aaattgcatt tttttccaca aatttaaccg cttgcgagct gcgtgaaacg
    30841 gcacagaaaa tcaatgcgga tattagcgat ctcactatta ttccaacctt aaaccaaggc
    30901 ggtttgctat taatggatat ggattccacc gctattaaaa ttgaatgtat tgatgatatt
    30961 gccaaacttg ccggcaccgg cgaggtggtg tccgccatta ctgccagtgc aatgcggggc
    31021 gagctggatt tcgagcaaag tttacgcaag cgagtcggca cgttggaaaa tgcatcggaa
    31081 agcattttgc aaaaagtgcg ggaaaatcta ccgcttatgg acggctttga gcagatggtt
    31141 gctattctta aggaacacgg ctggaaatta gcgattgcgt ccggtggatt tgattacttc
    31201 gccgattact taaaacaaaa atacgggttg aattttgcgg tctctaacca actggaaatt
    31261 attgacggta aattaaccgg caaggtgtta ggcaaagtag tggatgctca acataaagcc
    31321 gataccttac agaatttagc gacaaccttt aatattccac caaatcaatg ggtggcagtc
    31381 ggcgatgggg caaatgactt accaatgtta aaaaccgcca gtttaggcgt tgctttgcac
    31441 gctaaaccaa aagtgcaagc acaagctgat tttgtggtaa acttcgggga cttaacggca
    31501 ttatgtttat tacttaatgc caatcattta tttcaacatt aattgagagg aacaacaatg
    31561 ccatcatttg atattgtatc tgaaatcacg atgcacgaag tgcgtaatgc ggtagaaaat
    31621 gccaatcgtg tattaagcac ccgctacgat ttccgtgggg tggaagccgt tattgagtta
    31681 aatgaaaaaa atgaaagcat taagctcacg accgaatcgg atttccaatt agagcagtta
    31741 attgagattt taatcggctc ttgtgtaaaa cgtgggatcg agcatagttc attagatatc
    31801 cctacagaaa gtgagcatca cggtaaactc tattccaaag aaattaagct caagcaaggg
    31861 attgagtcag atatggcgaa gaaaattacc aagctgatta aggattctaa aatcaaggtt
    31921 caagcccaaa ttcaaggcga gcaagtgcgt gtaacgggca aatctcgtga tgatttacaa
    31981 gccgcaattc agctagtgaa aggggcagat ttagggcagc cattccaatt taataatttc
    32041 cgtgattagc aattcctgca attaatgatg acaagtggaa aaattcagca aaatttgacc
    32101 gcttgcatta ataattcaac ataaaaggaa gagatgatga gcgagcaaac agaaaagaaa
    32161 ggctggttta aaaaagccct tgagaaatat gatgcctttt gcgatgagct aggggtaaat
    32221 caaggtgctt gccgaggttg tgtccctgtg gtgaagtttg accctgaacc ggaaaaagag
    32281 cagccagaaa aatcagaaaa taaaacatag aaaaaatgca caatggtaag atacattgtg
    32341 cattttttat aggattttta attggcgtga tgatgggcaa aatattgctt aactccgcca
    32401 tctttcttgc aaggattctg aatatcagta gagtaactac cgttaaaaca aagagcagta
    32461 gcattcgatg gtttaatctt ttcctgttta gttagggctg gcggttgagt attggtttca
    32521 ctaatataga tcgttttagg ttgagaatag tctatatttt tgtcgccatt tacgacttga
    32581 acgggggtgt tcgagctgca agctacaacc gatgctgaag ccaatgtaag tataatgata
    32641 tggtgttttt tcatgggtaa tttccgtttt tatattttta attgagagaa tgttaaaaag
    32701 ggctgatttc tcaaccctta aagttatgcc ttaagcattt ttattaaaag tttgtcctaa
    32761 ctgaatttca tcatttaata caggaattaa ctgctctagt tgatcttttt caaattcgct
    32821 gagattgccg ataggtagaa ctttttccac accatttgta cctaaacgaa tcgggtaagc
    32881 aaagaatgcc ggagaggttt cgccattggc attatctaca taagcataac gaatgacatc
    32941 ttccccgatt aaggctctca ctaaaccaag tgcaaattct gctcctgctt gagccataga
    33001 taaggttgct gagccaccac ctgcttttgc ctcaaccact tcagtaccgg cgttttggat
    33061 acgatgagtt aattgctcga tttgttcttg agtgaactca agttttaagc catttactgt
    33121 tgcttgtgaa agcagtggaa gaatagttgt gccggaatgt ccgccaatca caggcactct
    33181 tacatatttc acatttacgt ctttcgcttc agccacaaag gtattcgctc gaataacatc
    33241 taatgttgta acaccgaaaa gtttattttt gtcatacaca ccggcttttt tcaatacttc
    33301 tgccgcaatc ggaataatgg tgtttaccgg gttagtaata attgcaatgc aagctttagg
    33361 gcaaactttc gctgcttttt cgactaagtt atgcacgata gtggcattcg tattgaataa
    33421 atcggcacgt gtcatccccg gcttacgggc aacaccagca gaaataacga ccacatcggc
    33481 atcttttagt gcctcagtcg gatcttcacc tgcaaaaccg gttactttta catcagttgg
    33541 aatatggctt aaatccactg caattcctgg agtaacaggg gaaatatcgt aaagagataa
    33601 ttcagattta gccggtaaat tgagttttaa taataaggcg agtgattgac cgattccacc
    33661 tgcagcacct aaaagggcaa cttttttact ttgacacata aaatttctcc taaatgttat
    33721 ggaagtttag accaatttag tctaagccaa ttttttgggc gattcaaacg gcaaatctca
    33781 tttttgagac atagagcaaa tttttagctg atttttatgg gttttattga tttatttgca
    33841 taaataagca agaattatga atatttttaa gtttttgtga ataagagtgt gaaagtggac
    33901 aagatagata gtttatcaga agcgtttaaa tcgctgttaa aggaagaaaa attcggctcg
    33961 caaagtgaaa ttgttgccgc actacaagag atgggctttg ataatatcaa ccaatccaaa
    34021 gtttctcgaa tgttatcaaa atttggtgca gtcagaaccc gtaatcctaa aatggaaatg
    34081 gtgtatcagc taccagtcga attaagtgta ccgactacct ccagcccact taaaaatttg
    34141 gtggtagata ttgatcataa tgatgcgtta attgtggtca aaaccagccc cggtgcggct
    34201 caactgattg cacgtttgct cgattcaatg ggtaaagccg aaggtatttt aggcactatt
    34261 gctggcgatg atacgatttt tataacgccg gtacgcaatg tgcaaattga aaaattggtg
    34321 aagaatgtga cacagttatt tgaaacatca ttatagaata agtaaaggag gacttaatgt
    34381 tctccttatt ttttaggaga ttattatgca catttttata acaggtggta cgggttttat
    34441 tgggcgtgaa ttaatccagc aattaaaatc tgaaaatcac cactttacac ttcttactag
    34501 agatacagaa gcgaaaagtg atgatttaca gattaattat tgctattcac ttgatgaact
    34561 tgttgattta aatgattttg atgcagtaat taaccttgcc ggtgagccga tttttgataa
    34621 acgttggaca gacgaacaaa aacagaaatt gattgaaagc cgggttaacc taacgaataa
    34681 gctcagtcaa ttaatgaatg caagctctaa ccctccgcat acttttctct ccggttcggc
    34741 aatcgggatt tatggcgatt tgcctccttc tgcaaatttt tatacagaat cgaccgcttg
    34801 ttatcaagat tgctttacca accggctttg ccaacagtgg gaagccgctg cactaaaagc
    34861 cgcaagtgat aaaacccgag tgtgtttaat tcgtaccggc acggtatttt cgcccgaagg
    34921 cggagcatta aagaaaattt taccgcttta tcgatgcgga ttaggcggaa aacttggttc
    34981 aggcaaacaa tattgggcgt ggatcagccg ccgggatcac gtacaagcgg tcatttttct
    35041 gctcaaaaat gcaaattgtt cgggtgctta taattttgtt gcaccaaatc cggtgagaaa
    35101 tgaagaattt aatcgtattt tagcgaatgc tgttaatcgc ccggcattct ttactgtgcc
    35161 tgaatttgcc ttgaaattag gcttaggcga acgagcttgt ttagtcttag ataatcaaca
    35221 gctcattccg gaaaaactac tcgcagccag ttttgtattc caagatccga ttttaaccga
    35281 gaacgttttc ttaaacccat aatttaggct ataatgctgt ataaaagcac agattaaaag
    35341 gtgattatgg atttctcatt attattagac ggtttaaatg acaagcagag ggaggcggtt
    35401 gctgccccga ttggtaatta tttagtgtta gccggggcgg gttcgggcaa aactcgggtt
    35461 ttaacccatc gcattgcgtg gctgattggg gtggaaaatg tgccggaatc caatattctg
    35521 gctgttacct ttaccaataa agcggcggcg gaaatgcgac atcggattga gtacactctt
    35581 tcccaatcgg gcgataatcg attgttcgga atgtgggttg gtactttcca cagcattgcc
    35641 aaccgcttac ttcgttccca ctatttagat gcggatttac cgcaagattt ccaaattatg
    35701 gataccgaag atcagcaacg tttactcaaa cgtttactga aactgcataa tattgatgag
    35761 aaacattttc cgccaaaaca cgttgcgtgg tatatcaacg cccaaaaaga taaaggcaaa
    35821 cgggcaaaag atattgatca ctataacgat ccgaatgaaa aaaaattggt ggagatttac
    35881 caaatctatc aagatgcctg cgaccgagcc ggtttgttag attttgccga gctgttgatt
    35941 cgggcttatg aactattcaa aaccaaatca accattttgc aacgttatca acaacgtttt
    36001 cagcaaattt tgattgatga gtttcaagac accaacaata ttcagtacga cttaattcgt
    36061 ttgcttgccg gcgatgtcgg caaagtgatg attgtcggcg atgatgatca gtctatttat
    36121 ggttggcgtg gggcacaggt tgagaatatc caacgtttct taaatgatta tgacaacgct
    36181 caaaccattc gcttagagca aaattaccgc tctaccggca acattttaag ctgtgccaat
    36241 gaattaattg ccaataacga taaccgctta ggcaaaaatt tatggacaga tagcggtgat
    36301 ggcgagcctg tggatattta ctgtgccttc aacgaacttg atgaagctcg ctttgttgcc
    36361 tcgcaaatca agcaatggaa agaagacgag ggtgatttgg cggaatgtgc ggtgttgtat
    36421 cgcagcaaca gccaatctcg tgtgattgag gaagctttaa ttcaagcgaa tattccttat
    36481 cgcatttacg gtggaatgcg attctttgaa cgccaagaaa ttaaagatgc tctggcttat
    36541 ttacgcttaa tcgccaatcg tcaagacgat gcggcgtttg aacgggtgat caacacgcca
    36601 accagaggca ttggcgatcg taccttagac acactccgtc aaattacccg tggtcgccaa
    36661 attacgctgt ggcaagcaat tcaagtggcg gtgcaagaag aacaactttc agggcgtgcc
    36721 acttcttcct tattgcgttt tgtagagctg attaatgctc ttgatcaaga aaccgagcag
    36781 atgtcgcttg ccgaacaaac cgattttgtg attaaaaaat cgggtttata tgaaatgtat
    36841 aagcaagaaa aaggcgaaaa gggcgaagtt cggattgaaa acttagaaga gttagttacc
    36901 gcaactaagc agtttgtgaa acctgacgaa gcggaagagc tgaccgatct taccgcattt
    36961 ttaacccacg cctcacttga ggctggagaa gcccaagcct cgcaacacga agattatgtc
    37021 gaactgatga cgctacattc cgccaaagga ttggagtttc cccgtgtgtt tattgtgggc
    37081 gtggaagaag ggattttccc aagcggaatg agctttgatg aaggcaggtt gcaagaagaa
    37141 cgccgtttgg cttatgtcgg cataacccga gctaagaaaa aactgacgat tagctatgcc
    37201 gaatcaagac ggctttatgg taaagaagaa cgccacgttc cgtctcgctt tattgctgaa
    37261 ttacctgaag agcatattcg agaagtgaga ttgagaggct caattaaccg agcggcaagt
    37321 tttaaccaag ctaattcatt tgcaaaaaat ccgacaaaaa cgaccgcttc ctttttaaac
    37381 gatgatactt ggaaaatggg gcagaaagtg aaccacgcta aatttggaca aggcacgatt
    37441 attaatgtgg agggctcagg tgaagccacc cgtttgcaag ttgcctttgt cggcaacggc
    37501 attaaatggc tgattgccaa aatggcaaat ttagagagga tttaggcgaa taaaaagttt
    37561 tttgcaggaa tatagatggc gagatatatt gccccttaac cttaaactaa gggtaaataa
    37621 aattaaataa tgcaagctag atataatgta aagtatcaga aataagatat taatttaaga
    37681 taaagaatag atggctgggg tactaggatt cgaacctagg gatgccgaga tcaaaacccg
    37741 gtgccttacc gcttggcgat accccaaaag aaaaaactaa cttacgttag cttatataga
    37801 tttgaatgtt tgaaattaag tggctggggt actaggattc gaacctaggg atgccgagat
    37861 caaaacccgg tgccttaccg cttggcgata ccccaacact aatttttgtt aatcgataaa
    37921 tggtgcggga cgagggactt gaacccacac acctcgcggc gccagaacct aaatctggtg
    37981 cgtctaccaa tttcgccagt cccgcaatgg tggctacagc gagattcgaa cttgcgaccc
    38041 caacattatg agtgttgtgc tctaaccagc tgagctatgt agccatttgc gttcaccata
    38101 tcggtcaacg gagtgcatta tgctgatttt agggctttcc gtcaaatact ttttttaaaa
    38161 aatttgaatt tttgattcgc ttgtatagtt attcgtcgtt ttggcttaaa tctagcattt
    38221 tttgtttata aaataatagc ttatattctg ctatttcacc gtttgcattt ctaattttaa
    38281 ttgagccagt acaggctcaa catcggggaa ttgcccttcc cacaaagaaa acgcaaacgc
    38341 tgcctgtcca accaacattc ctaatccgtc ttggcacgct gttgctccac aacgccttgc
    38401 ataattgaga aaaggagttt gcatattggg ggcatattgc atatcgtaaa tattcgccga
    38461 tgctataaca gattcaggca attcaacata tttgccttgc agaccgagag aggtggcatt
    38521 gacgattaaa ttaaacagtt ggtttgccaa atcgcttaaa caagcggtct gaattttgcc
    38581 aaattttgca aatttttcgg ctaaaacgac cgctttctcc tgcgtgcggt tatatagagt
    38641 aatctctaac cccgctttaa gtaacggaag taatacgcct ttggttgctc cacctgctcc
    38701 aagaattaag gttttatgcc ctttttgtaa ccaacctagc cgttccaaat cagaaactaa
    38761 accggccccg tcggtattat cggcatataa ccgtccatct tctaagcgtt taagcgtatt
    38821 acacgcctgt gccaacaaag cggtttcgct aaattcatct gccaatttaa aggctctttc
    38881 tttaaaaggg gcggtgatgt tgcaaccttt tgctccagaa gcgaaaaaat cggctaattg
    38941 ttgctcaaaa gccgtttcat ctcctaagtt agcgatatat tcaatgttgc gttgggtttg
    39001 taaagcaaag agttgatgaa tacgggggga tttactttga gcaatcgggt tgccccacac
    39061 ggcatatcgg ttcatttcgg cttatccttg tctaaaaatc tgttggctga aaatatctcg
    39121 aatttcggaa gggttttctc tacctagcgt gtctgcgtgt aatacaggaa aatcttgacc
    39181 aaactgatcg atgacttctt ttgcattgcg gcaaggtggt tctccgctca aattggcact
    39241 ggtagaggtc aacgcaacgc cgcttgcctc acacaactga accaccgccg gcacattaca
    39301 taaacgtacg gcaatagaat caaatttgcc ggtgaggtaa cttggcacag tatttttaac
    39361 cggtacgatc caagtaattg cctgctcgcc aatatggctt aggcgttgcc aagcctgttc
    39421 cgtcattcga gcttcatcaa tatagggaag aagatacttt aaatcagaag ccagtaaaat
    39481 tagccctttt tcctcagggc gttgttttaa tacgagtaat ttccttaccg ctttttcact
    39541 ttgtggattg cagcctaagc caaaaaccgc ttcggttggg taagctacaa cttcttcttg
    39601 ctttaattga ttaactattt ctaaaaaatt attcattcgg ttttaattct gtttggtgct
    39661 ggcaactttt gttagcacaa atggtgaatt gcttgccctt aatttttttg attgtagcga
    39721 gttcacaacc acatttttca cacaagtggt taatcggtcg agttgctaat gtaaatttgc
    39781 aattagggaa gcctatacaa ccataaaata ttttgcctga acgccctttt ctagcaatca
    39841 gtttatgttg cttgcattca gggcaatcaa actcttcttc aacctcagct tcttcgtgta
    39901 cgatgaagtg gcattcaggg taatggctac agccgataaa aataccataa ttgccttgtt
    39961 ttaattggag gtttccgcca cattcagggc aaagttcatc taattgctta ataatatgac
    40021 cggcttgatg taatggctta atataatcac attcagggta agctgaacaa cccaaaaata
    40081 accctttttt gccctgctta atttgcaacg gcgagccaca ttgtgggcaa gtttcggtct
    40141 gtttggttga tttgaaaagt accatattga tttgctaaat aagcgtaaat tcaatcacaa
    40201 aaaacgcatt gtcattcgga taaatctccc gaataacttg tttcaattcg gctaagctca
    40261 tattttcttg tttagcgtgt tgctcgttta attcatcaaa cactataggt gttaccgata
    40321 gcactttaat attggcgaaa aatctatcgg tttcattagt aaaaaccgct aattcttggt
    40381 ttggttgaaa ataagattct gacttgtctc gaatcgtaat tgttttttta ccgcttaaaa
    40441 tatcggcttc aaatcggctg aaaaaggtaa ttttctctct attcatattc atcgctactg
    40501 taatccagag ccattaaatg actaaaatga tcgttataaa aaccacggct aaccataaat
    40561 cgccacattt tctgctttgc tttcagatcc catacaagcg gtcgtttttt ctcaaaaatt
    40621 tgctcagcta attcaaacca atccacttcg gcgttttcta attcttggtt aattaaccaa
    40681 tcttttaccc ctttaagttt tagctcttgc tttaaacggc gaggcccaat gccttgcatt
    40741 gaacgataac ggataaaagt ggtacaaaag cgttcatcac tttgccactg attcgcttga
    40801 gctttttcaa tcgctgcatc aatctccgtg agttcatact ctttttgctt tagtttttgc
    40861 cgaagctctt gctcgctgta atcacgcttt gaaagtaaat atagcagata attaaccgct
    40921 gtgtatttat ttgttttagt agtagatgtt gtcatttatc ggttataaat aaaaatgcga
    40981 ttttcacgtt gagcgaaaac cgcataaatt taattagagt tcttcttcac taaattcatc
    41041 atctgcattg tctgcatttt cagaatctgg agtagccgta aaagttgggt ttgaaatgag
    41101 tagatttcga atatcttgct caattttact cgccacttca gggtgttctt ttaaccattt
    41161 gatggcatta tttttaccct gaccgatttt ctccccttca taagagaacc aagcccctgc
    41221 tttattaatg aagccgtgag attccgctaa aatgagtaat tcattcatac gggcaatgcc
    41281 ctcaccgtac ataatatcaa attggacttc acggaacggt ggagcaacct tgtttttcac
    41341 aattttcact tttgtttcgc taccgataac ctcatcaccg tcttttacta cgcctgaacg
    41401 acgaatatct aaacgtactg aagcatagaa tttaagggca ttaccaccag ttgtggtttc
    41461 agggttaccg aacattactc caattttcat acgaatttgg ttaatgaaaa tcaccaagca
    41521 gttggtcgct ttgatatttg cggttaattt acgcaatgct tgtgacatta aacgagcttg
    41581 taagcccata tgggaatcac ccatatcgcc ttcaatctct gcttttggtg taagtgccgc
    41641 aacagagtcc acaataatta catcaaccgc accggaacga actaacgcat cacaaatttc
    41701 taatgcttgt tcgccattat ccggttgtga aattaataat ccatctgtat ctacccctaa
    41761 cttacgggcg taaataggat caagtgcgtg ttcggcatca ataaaggcac aagttttacc
    41821 atttttttgg gcttgagcca ccacagataa agttaatgta gttttacctg aagactccgg
    41881 tccataaatt tccacaatac gacccattgg taaaccacca atgcctaatg ctgagtctaa
    41941 accaagagaa ccggttgaaa ctgcttcaat atcaagggct tgagtatcgc ctaacttcat
    42001 aattgagcct ttgccaaatt gcttttcaat ttgagctaat gcggctgcca acgctttttc
    42061 tttttgttcc ggatcaatct gtttaaccgg agtgttcttt tgactttttt tctctgccat
    42121 attctatcct ttgtaaactt ttatctaaaa gcaaccgctt gttgctgcaa aataactgta
    42181 tattattata gtatttactt atccagttgc aagcattttt ttaggatttt cgatcaagat
    42241 cacaaaaata aatttgcgag caaggcaatg cccttggttc ctcaaaggga ttaagagcat
    42301 taatcaacat aattttttca tattgatgca aatcttgctt ggctattttg gctaaaacga
    42361 ctttcccttc atcaagcaat ttactaagct gagtgccttt gagcaaataa tgttgcgggc
    42421 tataccagat tccttgtttt aggaacagta aattgccgat ggagcaatca ctgacgtagc
    42481 cattattgag aataatcacc tcttcatttt gtaaaatagg gagcaaatca aaccgcttgc
    42541 ggtcgctaaa tttgaggtga taatcccaat tttccacctc aaccaagcga aaacgttcta
    42601 cttttttggg cgaatagata aaaaatttca gctcaaattc tgttgcgttg taatctattc
    42661 ggcaacgtac tttgccccgt tgagaagcct ctggcacaac taaaatatca gcaaggctaa
    42721 aacgaggttc acagccaaaa tattcttgtg ttgcttgctc aaaacgttgt tgatgatact
    42781 gtaagttctg aactttgccg tcaataatcg aaagggtttc aaatagcgga aatcggcaca
    42841 tagactttct ctaacagttc attatattca tcagttaaca cactttgtga ggtaatgcca
    42901 ccaccactat gaaacacaag cccgtttgag gtttgagcaa tgtaacgaat tgccaccgca
    42961 ctttctaagc tctcgccatc aaaataacca aaaataccgg tgtagtaacc ccgttttcct
    43021 aattctgctt gctgaataat cgaaaccgtt ttctctttcg gtgcaccgct aatggagccg
    43081 gcaggtagta attttgccaa tatcgaaccg atattttctt gccaattttc acctaattcg
    43141 ccacagatct cggaacttgt ctgcaaaatt gcccctcgat gggtttctac tttttccaca
    43201 taacggtatt tagtaacttc aatatttttc gccaccaacg ccaagtcatt tcggatcaaa
    43261 tccacaatgg tattatgttc ggtaaactct ttttccgaag ccattaattt ctgctcggca
    43321 ttctcctcat ttgcattaat tgtgcctttc atcgggtagg aaaaaatgcg gttattttca
    43381 attcgcacaa agcattcagg ggaaaaacag acgaacctgc cttgcaaata acatttatat
    43441 tttgctttgc tggcggcaaa aatttccgcc aatgaataat tggtttcaat ggcagtcggg
    43501 tagctcaaat tcagcaagta gctattgccg gcttgaattt cctttttcac taattcaaac
    43561 ccggtttggt attcgctaaa cggaatcgga tttgccgata attcaaaagc tttagtcggt
    43621 ttttcaaccg gcttttcgag attcgatttg caaaaaaatt caaaaaaaag accgcttgcg
    43681 tgagcctgtt ctagcggaaa aataagtggc ttttgctgct caaaatcaat taaaaagaaa
    43741 aaagggcgtt ttgcttgccc gtagtgattg gcttggtgaa taaaatcttg catagaaaac
    43801 acaatggctg aaattggctg aatcatcaaa agctctgtta taatgcaaag caatagattt
    43861 gaaaagcatt ttttaaaaaa ggttttaccg atgaacaaca ccattcattt tcaagaaatt
    43921 gggatctaca tcgcccttgc cgtttgtgtg ctggtaggcg tttatctctt tttcttgaaa
    43981 tcccgttatc agcgaaatgc ctacgaatta agccaagatc ttggcaaaat caccgaaaat
    44041 tttgaacaaa ttcagcaaaa atatgaggtg ttggctcaag aaaaaaatca gcttgagcag
    44101 tgggcaattc aacaacagac caaatatgaa gcagtgagtg aacgtttaaa cgagcgagat
    44161 gggcaattgc aacgattcca acaaaaaatc gaacttgccg aacagcaaga aaaccagctg
    44221 gaacgctata ttaatgagct aaaagaacgt gtgggttctt cccaagcaaa ggcagaaagt
    44281 ttggaagaac agctacaatt tagccaaagt tcactctcaa ctaaagagcg ggaaaatcaa
    44341 gcgttattta gccgtttaaa cgaggtacaa aacgagctga ccgaactgcg tactacgctt
    44401 tcggaaaaac aggcaaattt tgaagcacaa caacgcaatt ttattgaggt aaaacaacag
    44461 cttaatgtgg aatttcaaca tttggcacaa caaattcttg acgaaaaaag caagcgtttt
    44521 agcgaaacca atcaaagctc gttagaagct ctactgaagc cgttcaaaga gcaaattgaa
    44581 ggctttcaaa aacgggtgaa tgaggtacat agtgagtcgc tcaaaggctc ggcaaattta
    44641 gaggctgaaa ttaagcgggt gctacaaatt ggcgtttcaa tgtcggaaga ggcacaaaat
    44701 ctggcaacgg cattaaaagg caataataaa attgccggca actggggtga agtacagctt
    44761 gaaagtgcct tacaatctgc cggtttactc gcaggcgagc attaccaagc ccaagagagt
    44821 tttcgtgatg aagaggggcg acgttttgcc cccgattttg tggtgcattt gccggatcaa
    44881 aaacatctga ttattgacag taaagtctcg ttagtagcgt acgatcaagc ggtcagatca
    44941 gaagaaaatt ttgcaatttc tcaagcctta gacgaacatt gccgttcgct acgcaatcat
    45001 attgagggat tgtctaagaa gaactacagt gcattattag gcattaaaag cccggatttt
    45061 gtactgatgt ttattccgat agaaccggct tatattgaag cgatgaagca cgatccgcaa
    45121 ctgtttaact ttggctatga acgcaatgtg attttggttt ctcacaccac cttaatgccg
    45181 attttacgca cggtcgccaa tttatggcgg attgaacgag gcaacagcga ggctcgtgaa
    45241 atcagcgaaa aagccggcga aatttacaac caagtgtgtg cggttgccga tcggttagct
    45301 aaattaggta acacgctaaa taccgcaaat aatcaataca atcaaaccgt tacctcgtta
    45361 gtgggacggc aaggcttact gggcaaagtg gaacgattcc aacatctttc aagcaaagca
    45421 agccaaattg tgccgcaggt tgagctgatt gaaaatgagg tggatactat taaattggaa
    45481 atggtatcga gagaattatt ggaagaatag tcaaatctct ttattcccta caaaaatatg
    45541 gggtgatttg aaatactaaa gaaaataata aaatgctaaa aaaactatta atcatcgaca
    45601 accacgactc ttttaccttc aacttggtgg atttactccg taagcttgat gtgccggcga
    45661 aagtggtgct ggttgaagag cttgacctca atgaggtgga gcattttagc catattttga
    45721 tttcgcccgg ccctgatgtg ccgagagcct atctacaaac ctttgcgatg ttggagcgtt
    45781 atcatcaaac caaatcaatt ctaggcgttt gcttggggca tcaaacgatt tgcgagtttt
    45841 ttggcggcaa gttgtataac ctaaacgatg ttagacacgg gcagcaacgc acgctcactc
    45901 aaattgagcc taaccccata tttaaaggtt tgcctaagca gttgaaagtt gggttgtatc
    45961 actcttgggg cattttgcaa aattcgttgc aaaatacacc gcttgtacca accgcagttt
    46021 gcgatcaaaa tgtgttaatg gcgtttaaac accaacattt gccgattttt ggcgtgcagt
    46081 ttcacccgga atcttttatc actgaatttg gtcaacaaat gttggcaaat tggcttgaga
    46141 ttacacaaga tttttagcgt gaaatccgct ataatccgtc agttatttac ccttttaaaa
    46201 tctgtagggg cgaaaaattt ttcgccttac ttaatatgca agagataatt taaatgaaag
    46261 attcgattat caataaatta gaaagtttaa gtgaacgcca cgaagaacta caggcgttac
    46321 ttggcgatgc ctcaattatt tccgatcaag acaaattccg tgcttattcc aaagaatatt
    46381 cgcaattaga agaagtggtt ggcaccttta accgctggaa aaagctgaac aatgatattg
    46441 aagaggctca attattactc gatgatcctg atatgaagga tatggcagcg gaagaaattg
    46501 cggaaaataa agccgaaatc gagaatcttg agcaacattt acaaatttta ttattgccga
    46561 aagatccgaa tgatgaatac aacgccttcc ttgaaatccg tgccggaacg ggcggtgacg
    46621 aggctggtat ttttgccggt gatttatacc gtatgtacag ccgttattgc gaaagtaaac
    46681 gctggcgaat tgaagaaatg tcggcaaatg agagtgaaca aggcggatat aaagagatca
    46741 tcgttaaaat ttcaggcgaa ggcgtttacg gtcagcttaa atttgaatcg ggcggacacc
    46801 gtgtacaacg tgtaccgaaa accgaatcac aagggcgtat tcacacctct gcttgcacgg
    46861 tagcggtaat gccggagttg ccggaaagcg agatgccgga aatcaatcca tctgatctgc
    46921 gaattgacac ctaccgctca tcgggtgcag gcggtcagca cgttaatacc accgactctg
    46981 cagtgcggat tactcatatc ccgaccggga ttgtggtcga gtgtcaagat gagcgttcac
    47041 agcacaaaaa taaagccaaa gcgctggcag tgttagcctc tcggattgta caagttgagc
    47101 aagaacgcca agccgcagag caagcggata cccgccgtaa cttacttggc tcaggcgacc
    47161 gttcggataa aatccgcacc tacaactacc cgcaagggcg tgtgactgat caccgtatta
    47221 acctcacggt ttatcgttta gacgaagtga tgaacggcaa aattgatgaa ttgatacaac
    47281 cgattatcac tgaatatcaa gcggatcagt tagcggcgtt gtcggagcaa aattaatttt
    47341 attgtaaggg tacactgtgt gtgcctgcca aatataaatt tgcaaaattt tgactatttt
    47401 tgatcgcttg tagtttctaa aaagtttaaa aatttgagga aaacaaaatg agaaagttag
    47461 gtttattagc agtatttact ttagtattat cagcctgttc aaattcaaca aaaattgaac
    47521 aaaccattct ttccaagcag gatatcgtag gctcttgggt atgcgctatt aaatacgatg
    47581 atctaaaagt aagcacttta gatttttctg aatttaaagc taatggcgaa atgacgaatt
    47641 tcggtgatat ttctgatgag aattttgagc ccattaaatt tacttatgta acaggagata
    47701 aagggaagtg ggacttaaaa ggaaatcgat tagtgattga ttatgatctt tctgaacgta
    47761 aagtaaaaag aacaacacca aaaaaatttt tagagttctt gaaacaggaa gagcgtaaag
    47821 cctcaaaaac agctaaaaaa ctccttaaat atgaacaagg gattttcaat attctgagtg
    47881 atcagaaaaa tactgaaaac agtaaaataa tattagatat tttgaagttt ggtcattcaa
    47941 gaatggcgat tcagcaaaat atgggagaca aagtttattc aggtggttgt gtaacagctg
    48001 ataaagcaga agagtattta gatatcctaa aaaatagaaa ttctaaataa tggattaccg
    48061 agagtggctc acttttgctg agcaaaaatt acttgaaaat agcggggcag atccatacct
    48121 aaacgcaaaa tttgatgcaa atttgctatt gcaagcagtc acaaaacgtt caaaatcggc
    48181 catttttgct ttttcggaaa ccctactttc tgaaagcgag cttgcagaat tagcggaaaa
    48241 attagctcgg cgtgccaaag gtgaaccaat ggcatatatt ttaggctatc gggaattttg
    48301 gtcgttgccg ttaaaggttt caccggcaac gctgattcct cgccctgata cggaacgact
    48361 ggttgagttg gcgttggaat atgctaacaa gcggttagga aatcagaaaa tgttgcaaat
    48421 tctggatctc ggtaccggca cgggggcgat tgcgttggca ctggcgagtg aattaggcga
    48481 gaaagcccaa attatcgggg tggatttcca aaatgaggcg gtgcaactgg cagaagaaaa
    48541 tcgccgaaac ttaggcttaa atcaagttac atttttacaa agcgattggt tcagttcgct
    48601 tgcaaatcaa caatttgatt taattgtctc aaatccgcct tatattgatg aatcggacga
    48661 aaatttgacg gtgggagacg tacgttttga acctttaacc gcattagttg ccgataataa
    48721 ggggttgagc gatttgcaaa aaatcatcga aaatgcaccg cttcacttaa aaccgcaagg
    48781 ggcgttaatg ctggaacacg gctggaaaca aggtaacttg gttcgagatt tatttgattt
    48841 acacttgtgg gaacaggtag aaactgctca agattatgcc ggcaatgacc gagtaaccaa
    48901 agcgatttta aaataaggca gaaaatggac gatattattg aagaattgtt aaaagagttg
    48961 gaagatccga aagtaaccat cagcgaaacc gagctgaaaa agtttcttta tcgtgaaatt
    49021 ttacgattaa ctacgctcat tgataagaat gtaagtgagc aacaagtgtt tggtcagatg
    49081 tctgcgttgg tgaaaaaagc tcgctataac gtgaatggcg aaggcgatga agagagaatt
    49141 aaccaattac ttcatttagt ctatcgtgaa tggggctttc attgctacta tgaagactat
    49201 ttccacaccg aaaatttgtt gctaaatcaa gtaattcgca aacggcgtgg aatgccggtt
    49261 tcacttgggg cggtggcgct ttatttatcc gccgtattgg atttgccgct ttacccggtt
    49321 aattttccga ctcagcttgt gttacgggct gaaatacacc agccgaacgg ggcaaccaaa
    49381 gtgcgtttta tcaacccgtg gaacggtgaa tttctcacca tcgaaatgct gaataaatgg
    49441 ctggaaggag aaatgggctt tggcgtagaa gttacccctg atttgttaag acgagcagaa
    49501 ccacaagagt tgctggaaag ggtcgaaact gtgtttaaaa tggcacttac ccgtgaaggc
    49561 aaatatgaag aaaccttacg cttgattgaa taccgcttgg catttagccc ggaagatccg
    49621 tacgaaatca gagaccgagg aatggtactg gcaagtatgg attgctacca agcagcatta
    49681 gaagatatta attatttcat tgaccaatgc cctgaagatc cttctgccga aattttaaaa
    49741 atggaagtga aaggactgca acaaaaaagc caagaaagtg tggtgcatta agctgagaag
    49801 tagccccaaa ggggctgagc tatgattaac ctagtacggc tctgccgtgc taggcagaaa
    49861 ataagaaaca aggactccct atgacagata aaattgtaaa agttggcaat attgaagtgg
    49921 ctaatcacaa accgtttacg ctttttggtg gtatgaatgt gctggaaagc cgtgatatgg
    49981 cacttagagt atgtgagcaa tatgttgaag tcacgcaaaa actaaatgtg ccttatgtgt
    50041 tcaaagcctc atttgacaaa gcaaaccgtt cttcaatcca ctcttaccgt ggaccgggaa
    50101 tggaagaagg cttaaagatt ttccaagaat taaaacaaac ctttggcgtg aacatcatta
    50161 ccgatgttca cgaaatttac caatgtaaac ctgtggcaga agtagttgat gtgattcaac
    50221 taccagcatt tttggctcgc caaaccgatt tagtggaagc aatggctcgt accggtgcgg
    50281 ttattaacgt taaaaagccg caatttttaa gcccgggtca aatggggaat atcgtagaaa
    50341 agattgctga atgcggcaac gatcaagtga ttttgtgcga ccgtggcact aactttggct
    50401 acgataatct agttgtggat atgcttggtt tcggcattat gaaaaaagtg tcgaaaggtt
    50461 gcccggtgat ttttgatgtg actcactcat tacaatgccg tgatccattc ggtgcggctt
    50521 ccggtggtcg cagagatcaa gtaaccgaac tggcacgctc cggtatggcg attggtttag
    50581 ccggcttgtt cttagaagct cacccggatc caaactcggc gaaatgtgat ggtccatctg
    50641 cattaccgct gtcaaaatta gaagcctttg tttcacagat gaaagcgatt gatgagttgg
    50701 ttaagagctt tgaagaaatt gatacttcca aataaacttt ctccgcatta aatcctttcc
    50761 tactttcttt gcttcgccaa agaaagtagg caaagaaagg cgaccctact tcgctacttt
    50821 tcttcgctta gtgtgaatgg gcttaacgaa aaatttacat tcgcttcgct cagagtaaat
    50881 tttcctaccc attaaaacac gctcaggtag ctcagaaggg ggttagaaag gtaaaagaca
    50941 gaataggaga aaaaaatgct aaatattgtt tttcttgacc gtaccggtat tcctgccact
    51001 cacgatattc ctcgtccgaa ttttccacat acttggacgg aatatgccac cacctctgcc
    51061 gatcaaactt ttgagcgggt aaaagaagcg gatattatca ttaccagcaa agtgttactc
    51121 cagcgtgact tgctggctaa attaccaaag ctgaaattaa ttgcgatcac agcaaccggc
    51181 acgaacaatg tggacttagc ggcagcaaaa gagttaggga ttgcagtgaa aaatgtaacc
    51241 ggctattcca gcgttaccgt gccggaacac gtcattggta tgatttactc cctgaaacat
    51301 cgtttagccg attatcaccg tgatttaatt acgtctgacc gctgggcaac ttgcggccaa
    51361 ttttgctatg tagattaccc gatccacgat gtgcgaggct caaccttagg cattttcggt
    51421 aaagggaaca tcggggctga agtggcacgg ctggcacaag cggtcggaat gcaggttatt
    51481 tttgcagaac atcaaggcgc aactgaaatt cgagaaggct acaccgcctt tgaagaggta
    51541 ttcaaacaag cagatattat ttcactacac tgccctttaa ccgagcagac tcaaaacctg
    51601 attaatgcag aaaccttagc cttaatgaag ccgaccgctt atattatcaa tacgggtcga
    51661 ggcccactga ttgatgaaca ggcattgctt gaggcattag agcaaggcaa gattgccggc
    51721 gctgcgttag atgttttagt gaaagagccg cctgaaaaag acaacccttt aatgttagcc
    51781 gcaaaacgtt taccgaattt actgattacc ccacacgttg cgtgggcaag cgattctgcg
    51841 gttacaacac tagtgaataa agtgacacaa aatatggaag agtttgtagc aacgggtatg
    51901 tagcttgaag taggggctgg tcctgtgcca gccctaatat taatagaatg agagggcggg
    51961 tataaaaccc gcccctacca atatcatttt agaaaaacag atgaatttaa cccctttttt
    52021 tattgctttt cgctatttta gatcgaaaag tgctgaccgt ttcgggcggt tagtcaccaa
    52081 tcttgccagc cttggcattg tgctgggcgt aatggcattg gtgattgtgc tgtcggttat
    52141 gaacggtttg gaaaatatgc agaaaaccaa tctgctatcc accttgccgc acgctatcat
    52201 cacccctcaa gaggggcatt ttgccaaagg tgaaaaactg gctctacctg aatttgccaa
    52261 gcaaagtgtg gtgattaacc gtgcgaatgt gattatccaa agttcacaag gcattaacgc
    52321 cggtcagtta atcggcgtgg aaaatgccac agacgatccg ttgttagtgg cggaaaatat
    52381 ccccgcatta ttgcctagcg gtgaatttaa ggtagtaatt ggctctcgtt tagccaataa
    52441 attgaacgtt acggtaggcg ataagctccg cttaatgatc actgaaaaca gccaatatac
    52501 gccacttggg cgagtgccgg tacagcgttt gtttgaaatt tcgggcgttt atcaatctaa
    52561 tcgtgaagcg agcgaattta ccctctttgc taatttagct gatgtcgggc gtttgcttcg
    52621 catcagcgaa gatcaagtac aaggcgtgcg tttatatttg caagatcctt tccaagttac
    52681 cgaacttagc caatatttcg atgcagaacg ctaccaaatc agtgattggc gtgagcaaaa
    52741 aggcgaattt ttccaagcgg tgaaaatgga aaaaaatatg atgggcttac tcatcagcct
    52801 gattattgtg gttgcaattt ccaacattgt gacttcactc agtttgatgg tggtagacaa
    52861 acagggcgaa attgcaattt tacaaaccca aggcttaacc aaaaaacaag tgatgcagat
    52921 ttttgtgttc caaggggcga ttgtcggagt aattggctcg attattggtg gtttgctcgg
    52981 cgtattgatc gcctacaatt tagatcagat tatcctgcta ttaaacccga gcatccatct
    53041 gcctacccta atttcaggca cgcaaattgc ggtcattgta ggggtgtcga tgttgctttc
    53101 actcctttgc acgctttacc cggcataccg agcctcaaaa attgagccgg cacaggcatt
    53161 gagatatgaa taataagaac ggaaataaaa tgacagaatt acttcgctgt gaacatatca
    53221 gcaaatttta cgatgagggc gaacagaaag ttcaggtgct aaaagaggtg tcattttcga
    53281 tgaacgaagg tgagctggta gcgattgtcg gtagttcagg ttccggcaaa agcaccctat
    53341 tgcacacatt aggcgggcta gatcagccaa gcaccggtga agtctggatt cgagggcaat
    53401 ctctgcaaca gctcagttca gacaaattag cgttattgcg taaccaaaac ttaggctttg
    53461 tgtaccaatt tcatcactta atggcagact ttaccgccct tgaaaatgtg atgatgccga
    53521 tgctgatcgg caaacagaac aaaactgaag ctgccaatcg tgccgagaaa atgctacaag
    53581 cggtcggatt agctcatcga atgacacatc gcccatcagc actttcaggc ggcgaacgcc
    53641 aacgggtggc gattgcccga gcgttggtta ataatccggc tctggtactt gccgatgaac
    53701 cgaccggtaa tttagaccaa aaaaccactg aaagcatttt tgagctgatt caacagctca
    53761 accaagagca gaacattgcg tttttattag taacgcatga tttaaatcta gcgaataaac
    53821 tttcacgtag tcttgtaatg cgagatggcg tgttaagcga ggggagctta tgagtacgcc
    53881 gtttttcatt agctggcgtt accaacgggg caaacagaaa aacaaactgg tttcactgat
    53941 tgctctcttt tccaacatcg gtattgccct tggggttgcg gtattaatta tcgggctaag
    54001 tgcaatgaac ggctttgagc gagagctgaa taatcgtgtg ctttcggttg tgccacacgc
    54061 tgaactggtt tcgtttcaag gcaatcagcc tcaaccaatt tttgatagca aaaaattaga
    54121 ggcattgata aaaaaatcgc aaaatgtgac cgctagttcg ccttttgtca gctttaccgc
    54181 cttaattgaa aatggggctc agcttaaaat cgcccaggtg cgaggggttg atcctaaaaa
    54241 gcaagatcag gccagccaat taagccaatt tattccaccc gagcaatggc aagcgttcaa
    54301 tcagcaattt caagccgatg aagatggctt gattttagga gccggtattg ccaaagcgtt
    54361 agaagttgag gcaggagacg aagttacgct tttaattcct cagccaacag aagacggcaa
    54421 attagcccag cccttgcgtt ttaacctaaa cgtaaccggc attttgcggc tagatgggca
    54481 gctggatcac agttatgcct taattccact gaataaagct caagagctga tggaatacca
    54541 agcgaatgaa gtgtcagggc ttgaaatcag ccttgccaat ccgtttgatg tacaacagct
    54601 tgaaatgcca caacttaacg gctataccca accgctttat ttgaatacgt ggattgataa
    54661 attcggttat atgtataacg atattcaact gattcgcacc gtgatgtaca ttgcaatggt
    54721 tctcgtgatt ggcgttgcct gttttaatat tatttccacc ttgattatgg cagtgaaaga
    54781 caaacaaggc gatatcgcga ttttacggac actgggggca aataacggtt ttatccgccg
    54841 cattttctta tggtatggct taatttcagg tatgaaaggg gcgttattcg ggctgatttt
    54901 aggtgtaatt ttatcgctaa atttaaccgc tattatcaaa gcgattgaag cattctttga
    54961 ggtgaaattg ctttcagacg gggtttattt tgttgatttc ttaccaagtg aattacattg
    55021 gcaagatgtc gtctatgtat tggcagccac gattatccta agcctttttg ccagcttata
    55081 ccctgccaac cgagccgcta aattagaacc ggcaaaagtg ttaagtgggc attaatcatt
    55141 ttcctattct aataaaaaag cagctacccc tcgattatgt cagaaaggta gctgctttta
    55201 tttatgttat tactcttcgc ctaataattt caactcacga gccttaattt ggttttttag
    55261 aatttcaact aagtctgaaa cgaggtaagt acctaagtct gcacctttac gggtacgcac
    55321 agacacttta ccttcggcga tttctttatc accgcaaacc aacatataag gcacacggcg
    55381 taaggtgtgc tcacgcactt tgaagccgac tttttcgttg cgtaagtctg ctttcacacg
    55441 aatgcctgca tcagaaagct gtttcaccac ttgttgcaca taatctgctt ggctgtcggt
    55501 aatgttcatt accactgctt gggttggggc aagccaagtt gggaagaaac cggcatattc
    55561 ttcggtgata atcccgatga aacgttcgat cgagcctaaa atcgcacggt gaatcattac
    55621 cggtgtgcgg cgaccattat cttctgctac ataagaggct gctaaacgac ccggtagagc
    55681 gaagtcaagt tgcactgtgc cacattgcca ttcacgtcct aagcaatcac gcaatgcaaa
    55741 ctcaattttc ggcccgtaga atgcaccttc gccttcttga atttcatatt caagtccgtt
    55801 gttgcgtaag gcgttggcta agcctttttc tgctctgtcc cacattgcat catcaccgat
    55861 acggttttcc ggacgggttg aaagttttac tgcaatgtta gtaaaaccga aggtgctgta
    55921 aatgtcgtac accattttga tacagctgat tacttctgac tcgatttgtt cttcagtaca
    55981 gaaaatatgg gcatcatctt gggtaaaacc acgcacacgc attaagccgt gtaatgaacc
    56041 ggacggctcg ttacggtgac acgaaccaaa ttccgccata cggatcggta aatcacggta
    56101 agatttcaag ccttgattaa agatttgaac gtgacccggg cagttcatcg gcttaattgc
    56161 atattcacgg ttttccgatt gggtagtgaa cattaaatct gcgtagtttt gccagtgtcc
    56221 ggttttttcc caaagcacac gatccatcat aaacggacct tttacttctt ggtaatcgta
    56281 ctctttcaat ttggtacgca caaaagtttc aagttcacgg aaaatcgtcc agccgtcatt
    56341 gtgccagaac accatacccg gtgcttcttc ttgcatatgg tataaatcta acgctttacc
    56401 gatacggcgg tggtcacgtt ttgccgcttc ttccaaacgt tgtaaatatt cggctaattg
    56461 ttttttatca gcccaagctg taccgtaaat acgttgtagc attttatttt tgctgtcgcc
    56521 acgccagtaa gcacccgcta ctttttgtaa tttgaagtgg tggcagaaac gcatatttgg
    56581 tacgtgtgga ccacggcaca tatcaatata ttcttcgtgg tgatataacg caggcgttgc
    56641 cgtacgttca atattttcat ctaaaatcgc cattttgtat ggctcaccac gtttctcaaa
    56701 ggtatctcga gcttcttgcc agcttaccgg gcgttttacc acgtcatagt tggtttttgc
    56761 cagctctaac atacgctttt caagagcgtc taaatcttct tgagtcaaag agcggtctaa
    56821 atcgatatcg tagtagaaac cgttttcgat agtcgggccg atagccattt taacgtctgg
    56881 gaataattgc ttgatggagt gacctaacaa gtgagcggtt gagtggcgaa tgatctctaa
    56941 accatcttcg tctttggcag taatgatttc aagtgtgctg tcttggctga tgatatcaga
    57001 cgcatcacgg cgttcaccgt ttacacgacc ggcaatggtg gctttcgcta aacctgcccc
    57061 gatagattgg gcaacttcca ttacagaaac tgggttgtca aatgaacgtt gtgaaccgtc
    57121 cggtaaagta ataattggca taataaatcc ttacagtggt aatccatacg agagattact
    57181 tgtgttgttt gaatgaaaaa accgcctaca agcggtcttt tttgattaaa attttgcaat
    57241 ttgcttatta tttcccttac aagtggggaa taaaagcact gaaattctag cataaaacaa
    57301 agaaaaatta aactttgctg ttttcagcgg ccccttcatc aagctcaata ttttcatttt
    57361 ctgtttgtgg atcttgttca agtatttcaa gctgagcctg gtactcttgt accgcttctt
    57421 catcaaatgg aataagtgcg tcctcaacaa cttcaatttc ttcaagtggg cttgcggttg
    57481 caattggggt agcatattgc atctctgctc gttccgcttt cggaattgat ttggtgcgga
    57541 aagcacaaat aaataaacta agtgagaaca gtccaaaaag tgcataaaag ccatattcag
    57601 cggaaaggct catcgcaaaa ccgataagcg gtggagcaac taacgccccc acaccatagc
    57661 aaaacagtaa acccctgctt acttcaaccg tgttcatatt attcggcaat tcatcgttgg
    57721 cacgggcaat gctcaaagca tataagctaa acagactaca gccaaagaaa aaggcgataa
    57781 tatactgtcc ccaggcggtc aaattttctt ggaaaattgc aaataatccg gcaagtgcgg
    57841 ttaaagtggc aatcactgaa caagctaaaa tggcgttacg tctgccaata cgattcgata
    57901 atatcgccat cggcatttgg ctgataaaac caccgatcat cgagatcatc aaataaagcg
    57961 agatttcact taatgaaaag ctaaacttca gcagaaagac tgacgccatt gtaaaaaagc
    58021 cgtttaccaa cattccgcta ataaagctgg ttgctaaggc taacggtgaa atcgcaaata
    58081 gtttaggaat actaatgcgc tctcgagccg gaatatcagg ctgaaccatt ttagttaaag
    58141 caattgggat catcgacatc acaaccaaaa tggtagataa gataaaaatg tttcggctac
    58201 taagttctaa acttaataaa cttacgccta aaataaaggc gagatagaag ataatgttat
    58261 aagtggcaag cactttgcct ctggtatcga cattggtttt ttcgcttaac caactttcga
    58321 ctaaaagcag caagctataa tgacagaatc ccaaaataat tcgtaacacg ccccagatcc
    58381 acaaagtatc aatcataata tgaccgagag cggcgatagc aaaaacagca cagaaaacgc
    58441 taaatgaacg gatatgccca acacttgata caatgcggtg agcaaaaata gtgcttaatg
    58501 ccgccccaat aaagaaagca gcgttaagta aaccgatgat gatgtccgtt atccccattt
    58561 ctgccagttt gatccctgct gaatttagaa ataaaccgta gccgaaaaac agaaaaaaga
    58621 tacctgaata aagggagtaa aatttagtgc tattcatcaa tgctccttca aacattctgc
    58681 cagtattaaa tcattgtacc gatttaatac cttttaggca aaaaagttat tattagcgtt
    58741 gagaaaataa cttttggcta ttttgattaa aaaatcaaat gaaggtgatt ttgaaatgta
    58801 gtaaaaaata gagcaatcag aattgaaaaa gggtttgccg taacaaagcc tttagaaaga
    58861 ttagagtttc gagaagaatt tgtagcttgg gctaaccaaa acacttgcta ggagtgcttt
    58921 aagcacacca cctaaaataa atggatataa gcccgcttgt aatactgtgc cttctggtac
    58981 aaagaaagtt gagccaagcc gaaagcaaag gtgatcacac ttgcaattaa ggcgacaaat
    59041 aaacttttcc aaaaagagtt taatacgcct ttatcgctat aatagcctaa gaaataggcg
    59101 gttggaatat agcctaataa gtatccgcct gttggaccaa agaaatgatg gaaacctgaa
    59161 gcaccgccgg caaagacagg taaaccaatc gccccttcaa aaagataaag taatactgca
    59221 gcagttgcgg ctttacgacc cattgcaaaa ccaaccacag ttaaagcaag tgtttgccct
    59281 gtaatgggta cagggtacat cggcacagaa atttgtgcaa aaatagcaag cagtgttgct
    59341 ccaataaaag ttttcaacca aaatgtagtt atactattgg cttctagcca acgtttagtt
    59401 tgaattaatt gcgtagtgaa cataatcctc tcctttaata tggttaaaat gttctcaacc
    59461 gattatataa gaagatgtct tttagggtaa gagtgaattt aaaatggtaa aaccagttta
    59521 tatttattgt gatgaaggta gcagtgaaat tggtgttcaa tcactgttat tggcagtaaa
    59581 acagcattta cagcgtccgg cttatctcat caatgccaaa caaattattc aaagcaagtt
    59641 ttccgatggc tgtttattaa tcatgcccgg tggagccgat ttaccttact gcaaaaaatt
    59701 aaacggagaa ggcaatcgta gaatccgcca atttattgaa caaggtggag cttatctcgg
    59761 tatctgtgcc ggagcttatt atggctgtgc tgaattgaat tttgtagggc gtgactatag
    59821 cgtaaatggt aatcgagaac tagctttatt taatggcatt gcgggcattg cgaaaggcag
    59881 tctgccgcag tttaccaacg ggcaacttta cgataaaaac attggtagca aagcgatagt
    59941 tgaagtaaca cttgcagagg gtggaaaaat gccgttttat tatcacggtg gttgctgttt
    60001 tgaaccaaat tcaacaacag tgatttacaa cccgttggct tattatcctg atggctcagt
    60061 agcaatgata gagggagagc tagggcgagg ttactatctg ttgtcgggtg tacattttga
    60121 attacaagcg gtcgtttatt ggcaaaaaat tgtaaattgc tgtgaaaatc ttgacataaa
    60181 aacacaagaa gaagcaattt gctctaattt taatgtaaat tatggctcgc aaatttggca
    60241 acatctaaag caacgactaa atcaagcgta aaaaaataac ctttcgctat tctgccaaat
    60301 ggtttctgca atcagatttg gtgattctgt tcttaattca catagactat tgaaagtcac
    60361 taaaagccgt tccggtcggt tcggctggcc ttgaaagcca aacaccggca tatcgggcga
    60421 gtcggtttcc agtagtaaac tttcaagagg tagtttgcgg atagcctcac gggttttgtt
    60481 agcacgttca taggtaatag ttccccccac accaatttta taaccgagat cgacaaaacg
    60541 ttttgcctgt tcatagctgc cggcaaagcc gtgaaccaca ccggttttgg ttagttgggc
    60601 ttttttgagg aacacaaaaa gttgatcgtg gcttttacgt gaatgaagat taacgggtaa
    60661 attaaatttt ttcgcaaggg aaagttgtgc ctctaaaaat tcacattgct ttttccataa
    60721 ttcaggggta gaaacttcac ttaccgcttt ttccaaaccg atttcggcaa tagcggtaca
    60781 ctgtggatct tgttggctta gcaaattttc caataagatt aaatcttgtt gttggtgctg
    60841 ttgaatatac agtggatgca accctaatcc atacaccaaa ttttccggtt tttgtttggc
    60901 acaagcggtc acttttgcaa aattttttgc aaatacggca acgataagaa tgcattcaac
    60961 ctgatgctgt ttggcattct caaccaattc cggaatgctt aaattcaggc tttctgcgag
    61021 atagtcgagg tgagtatgag tgtcaaaaaa tcgcataata aaaccaataa aaacggggac
    61081 tagattgtcc ccatttttag cattttacgc aagcaattag tttgttacat aagcatcttc
    61141 atcacgagcc tcagatggct tgaggaaagc aaagaagcaa ataacacaaa ctaccgtaat
    61201 cgcaaaaccg atataaactg ataattcata atctaaaccg aagccgattt tgttgttcgc
    61261 aaggtaagtt gcacacacgg tagtgataaa ccatgcagga atcgagcata cccagtggaa
    61321 ttttttatag cggtataagt aacctgcggc agtccataac ataaccattg cagtcatttg
    61381 gtttgcccaa gtgaagtaac gccataatac gctgaaatca acttttgaga caatgaaacc
    61441 aagtacgaat aatggtacgg caatatacaa acgttttact aaggtacgtt gttctaaacc
    61501 aaagatttcc gctagttgta aacgagcggc tcggaatgca gtgtcacctg aggtgattgg
    61561 taatactaca acgcctaata cggcaaaaat accaccgata aaccctaaga agtgtaacga
    61621 gctgtcatat accactttag acggtgaacc ggcagagatc gcatcttgta aggcttgtgg
    61681 gttttcatag aatgaaagac ctactgcaca ccatactaat gcaattaccc cttcagtaat
    61741 cattgcaccg tagaaaataa aacgaccttc tttctcattt tgcgcacagc gagccattaa
    61801 tggggtttgg gttgcgtgga aaccggataa tgctccgcaa gaaatagtta agaatagtaa
    61861 tggccaaatt ggaacatcac ctttcacttg gaagttttgg gtgaattttt cccacgttaa
    61921 gccttgaccg tctgcattca ctgtacggaa gaagtcgata ggatcagtcg cacttaagtg
    61981 agcgctgact agaccatata ccatacctac agacataaag agtaataatg ctccgaagaa
    62041 aggataaatt cgaccgatga ttttatcaac aggtagtaat gtagcaagaa tatagtaagc
    62101 aaaaatgatt aacgtccaca cagaaatcac ggttgcttta tccatacccc aaacggttac
    62161 gccacctgat gctacagatt ctttaattgc ttcaacatca cctaattcca ttgcactttg
    62221 ggttgcacct gcaatatcca tggtgatggt agagagtaac tgagcagggc ttgcaacgaa
    62281 aactacgcct actaataaaa gcaagatgag cgccattacg ttgatgaata acttgactgg
    62341 acgacccaag aatttccctg ccagatttgg catcgttgcg ccaccgttgc ggatacttaa
    62401 cataccacag aagtagtcgt gtactgcacc ggcaaaaata caaccaatca caatccaaag
    62461 cattgcaact ggtccgtata aggcaccaag tattggtcca aaaatagggc cggtaccggc
    62521 aatgtttaat aattgaatca gccaaatctt ggttttagac attggcatat agtcaacacc
    62581 gtcgttcatt gcataagccg gcgttgctct tttcgggtta atcacgaaga ttttttcaat
    62641 gatttttccg taagtaaagt agccaagaac aagcacggct acacagaaaa agaaccacaa
    62701 catagtagaa atcctataaa ttgagataaa tgatcatttt tagcagaact gataaaggcg
    62761 tgccattgta agtgaggagt gaggataaag taaaatgaat tgttagattt gtgtgaataa
    62821 tttactgaaa atgtgaggtt catcaaaaaa tccctttgtt ctgcgtcaat caaagggact
    62881 ttttaaagtt aaatatcgaa tttttgaatt ttcgcttcaa tgccttgggc atctaatcca
    62941 agatcggcat aagcttcagc ttgagtagat tggggaacga aaaagtcagg aataccaagc
    63001 attacaagcg gtttgatttt gccgatattt tgcaaatatt cattcacaaa actacctgcg
    63061 ccaccttgaa tagcattttc ttcaagcgta actaacaact cgtgtgaatc cgccactttt
    63121 tgaagtaatg cttcatctaa tggtttaatg aaacgcatat ctaccaacgt gtagttatgt
    63181 ttttcagcca caatctttgc ttcatcaagc aaagcaccaa aatttaaaat cgcaactttt
    63241 ttaccttcac gaataatgtt tcctttacct acttcaagtc tttgcattgg ctcaagtttt
    63301 acccctttag cattgcctcg agggtaacga atagcacttg gcgtattcat cgtgtaagcg
    63361 gtataaagca tttttcgcat ttcattttca tcgctcggtg ccataatggt catattggga
    63421 atacaacgca taaaacttaa atcaaatgca ccttggtgag tttgcccgtc agcgccgaca
    63481 attccggctc ggtcaatcgc aaaaatcacc ggcaggtttt gaatagcaac atcgtgaatt
    63541 aattggtcat aagctcgctg caagaagctg gaataaattg cgactaccgg tttgtaacct
    63601 gcgattgcta agcctgcccc gaaagtcact gcgtgttgtt cggcaatcgc cacatcaaaa
    63661 tattgttcag ggaaacgttt ggaaaattct accattcccg agccttcacg cattgccggc
    63721 gtaatgccga taattttcgg atcacgctct gccatttcac atagccaatc gccaaaaata
    63781 ttggaataag taggtgctgc ttttgatttt ggtaactcgg ctgcggtagg gtcaaatttc
    63841 ggaacgccat ggtagccaat cggatcattt tccgcaggtg tgtagccttt gccttttttc
    63901 gtgcgaatat gcagaaattg agggcctttc agctcacgca tattgctcaa ggttttgact
    63961 aactcgtcaa tattatgtcc atcaatcggg ccgatataat taaagcctaa ctcttcaaac
    64021 aaagtgcttt caggggagaa aatcacccct ttcatatgct cttcgctttt tttcataaag
    64081 tttttgatgg taggcacttt atctaaaatt ttcttactgc cgtcacgcac tgaagtatag
    64141 agcgaaccag aaaaaatgcg ggcaaggtgg ttgtttaatg ccccgacatt ttcagagatt
    64201 gacatttcat tatcatttaa gataaccaac atatcggtat gcaatgcacc tgcgtggttt
    64261 aatgcttcaa atgccattcc ggcagtgatt gcaccatcac cgattacaca gacggtttta
    64321 cggccggcat tttctttttc tgctgccacc gcaatgccaa gtccggcact gatcgaagta
    64381 gaagaatgcc caacgcttaa cacatcgtaa gggctttctt cacgccaagg gaaggggtga
    64441 ataccatctt tttggcggat agtgtgcatt tgatctcggc gcccagtaag gattttatgt
    64501 gggtaagctt gatgaccaac gtcccaaatt aattggtcga aaggcgtttg ataaacataa
    64561 tgcaaagcta ccgtaagctc tactacccct aagccagagg ctaaatgtcc gctagtttga
    64621 ctgactgatt ccaataaata ggctcgcagt tcatcaacta cggtttgaag ctggtcttta
    64681 gaaagtaaac gtaaatcttc cggtgagttg atttcgctta acagaggata cttcttttcc
    64741 ataatgtttt attacccaca accatcaaat aatagatgat attaaattaa gctttgagtt
    64801 cttcggtcaa agtaggctga atgctattta aaatttcttt aaccacacgg ccgttaccaa
    64861 caaccagatt acctgttttc aagtaatctg ttccgccaac aaagttagtc acaattgcac
    64921 cggcttcacg ggcaataagt tcaccggcgg cgaaatccca cggttttaag ccgatttcaa
    64981 agaaaccatc aacacgaccc gctgcaacat aggcaagatc taaagcggca gaaccggtac
    65041 ggcggaaatc agctactccg ttattcatta agccttcaag catatttaaa tgtgcatcac
    65101 gatgtctgat gactttgaaa ggaaaaccgg ttgcaattac agtgcctttt aaatcacggc
    65161 gttctgcatc aatgcgtaaa cggaactcgt ttaatttagc cccttcgcca cgcaccgcag
    65221 tgaaaagctc gttacggata ggatcgtaaa ctacccctac tgttgtacgt ccgttttcac
    65281 gcacggcaat cgacacagca aaatgaggta agcgttttac gaaattggtt gtaccatcta
    65341 atggatcgat cacccattgt acattttcat tgctaccgtt taacacgccg gactcttcgg
    65401 tcacgatcga gtgttcaggg taagatttac ggatcacatc aataattgcc gcttccgctg
    65461 ctttatcgat ttcagtcaca taatcattcg tatttttttg taaaacttgt gtatcttgag
    65521 gcgattgttc atagcctttg gcaataatat tgcctgcttt tcgtgccgca cgaatagcaa
    65581 tgtttaacat tgggttcata tttccaccag attttaaaga acataataaa gcacgaatta
    65641 taaagaatgt agcgaaataa agaaacaaca agcggtctaa tctgtgaaaa attttgcaaa
    65701 aaaatggctt tttctaaccg cttggagttt ggattcgtta taatacctcc cattcaagcc
    65761 acccatttag gtactaaaaa tgcaatttaa agaaaataac caacctcgtt ttaaacacag
    65821 agaagaacgc cgttcagatg agtgttcccc ccgtttttca gataaaggca aaatgcgagg
    65881 aaatgaaggt aaaagtgaca gaccgcataa gctacatttt aagcgtgacg aggcttattc
    65941 acgctctgag cagatttatc cagcagaagg caaaaaagcc agtggtgaag gtagtgtgca
    66001 aatttgggta aaaggtggga atagctcagt taaagagaaa aaaaacggcc cgctttcacc
    66061 gagagcgcct gagaaaatta agaaaaatcg cttggaagag atgaaagtct atggcgaaaa
    66121 tgcctgtatc agtttgttcc aacaacgtcc tgaatctatt gtacgtttat gggcaacagt
    66181 ggagggggca aaaaaattag gcgatttaat gagctatttg gctcagcaca aaaaagccta
    66241 tcacgttatt gaccgtgaag agatggagcg agtcaccggt actgaacatc acggcgatat
    66301 gtgcttattg gtgaaaaaaa cggcttcatt tgtgctagag ggctatttac aagtgccgaa
    66361 aaaacaagat tgcttggtac tgttagatgg tgtaaacaat gctcagaatg tggggggaat
    66421 catcagaacg tgtgcttttt atggtgtgaa aggcattatt actgaaaatg tggatagctt
    66481 aaactccagt gctgcagctc gtgtcgcaga gggtggtttg gaatttgtgc gagcgttaga
    66541 aactaaaaac aagcatattg ctttggtaca actccgccaa gccggttatc aaattgtcca
    66601 cctcacacgc cataagcaag ccccttcttt aaccaaaatt aagctggcgg aaaaggtggt
    66661 ttttgtatta agtgagattc ctgcaagtga tgtggcttac gcagaagaca caacaataca
    66721 gctttccttt aataatccgt taaatagtgg tttaaatgtg gcggtaaacg caggtattct
    66781 acttaatcaa tggtatcaaa cccacattct ttaaggaatt gaaatgaatc agcaaaaacc
    66841 gtttgaagtg attgcgattg ttggcacacc tcgccacgac agtgcatttg aaacacatct
    66901 tgccgtttat aattggttaa aagatcgtga ttatcaaatt ttagtggaaa cagaggttgc
    66961 cactcagtta cagcttaagg aaagctacag tttagatcag attgggcagc gcgcagagtt
    67021 ggtgattgtg ataggtggcg atggtaatat gcttggcatc gcccgagctt tggctaaata
    67081 ccgagtgcca ctgataggca ttaaccgtgg caatctgggt tttttaaccg atatcgcacc
    67141 tcaaacggct tttgaacagc tttatagttg cttagtcaaa aatgagtatg tgattgaaga
    67201 gcgattcctg ttagaggctt tcattgagcg caacggtaaa attattgccg caaataatgc
    67261 cttgaatgaa attgtggttc acccaaccca agtggctcga attattgaat ttgaagttta
    67321 tattgacgga aaattcgctt tttcacaacg tgcagatggc ttgattgtgg caacgcctac
    67381 aggctcaacc gcctattcac tttctgctgg tggcccgatt ttaaccccga atatgaatgc
    67441 aatggcatta gtgccgatgc accctcacac tctttcttct cgtcctttgg tggttgatgg
    67501 cgatagtcaa atttcgcttc gttttgccaa atataatacc cctgatttag aagtgatttg
    67561 tgacgggcag gtgaatatgc actttacgcc tgaagataga gtcttggtgc gtaaaagccc
    67621 ggataaatta cagctgctcc atttaaaaga ttatagctac tttactgtat taggttctaa
    67681 attaggctgg gcaagtaagt tgttttaaac acaagcggtg ttttttctga ttaaatttgc
    67741 aaatgca
//
LOCUS       DANLVT010000002        55455 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.002, whole genome shotgun sequence.
ACCESSION   DANLVT010000002 DANLVT010000000
VERSION     DANLVT010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 55455)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 55455)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..55455
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.002"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            212..424
                     /locus_tag="PXC99_000074"
     CDS             212..424
                     /locus_tag="PXC99_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000034825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HDL5416578.1"
                     /translation="MSAITGTVKWFNATKGFGFITPDQGGKDVFVHFSAIEANGGYRT
                     LEDGAKVQFEIQDSERGASAVNVKTI"
     gene            complement(484..1638)
                     /locus_tag="PXC99_000075"
     CDS             complement(484..1638)
                     /locus_tag="PXC99_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate MFS transporter"
                     /protein_id="HDL5416579.1"
                     /translation="MMKVSPFQWAAFNYFGFFCAYGVLLPFLPVWLKHHGYSTEMIGL
                     FAAVGYLFRFAGSMLASQRVKTVSQLIPTARSLTWLNIAAAAALLFSGDFIWLLFPVL
                     MLFQMFNSGAMPIADSIASIWQHQIGLDYGRARLFGSMAFVVGSLSAGYLIGLLGENS
                     VVWIIIGFLVFLGIGQLATPKVGFEEQGNKANTSSVTYRQLLKEPETLKMLIAVSLIS
                     ASHAAYYTYSTIHWSNASISTAMTSLFWGLAVVAEILFFLVSKRLFKSWKISHLMILA
                     AVFAVIRWAIMGSTTEIVLIIVMQMLHSITFGAAHIAMIRYISMQSAERVTKLQGLYF
                     GLASCAFMAVFTFIAGMVYQHSPSLTFWLMAIFTLPAIFIVPKRFEVQIN"
     gene            complement(1635..2453)
                     /locus_tag="PXC99_000076"
     CDS             complement(1635..2453)
                     /locus_tag="PXC99_000076"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HDL5416580.1"
                     /translation="MNEKKLAFIGTGNMAYAIIQGLLKSGYSAEQIIACNKSNLARRE
                     ELQAVGIATNFANREAVEQADVIVLAVKPQMMAQVCAEFADVDFSNKWVISVAAGISV
                     QRLETLLPSAKNIIRTMPNTPSLISEGMTGLFAKKSVNPTACQFAEQLMSAVGKCYWV
                     ETEEQINHIIAITGSSPAYFFRFMEAMQQSAVQMGFSEQDARTLVQSVALGAAKLVEA
                     NPTTPLSTLRENVTSKGGTTAKALEVFEQHDLAKTVDDAMWAAIHRAREMEQSL"
     gene            2530..3438
                     /gene="rdgC"
                     /locus_tag="PXC99_000077"
     CDS             2530..3438
                     /gene="rdgC"
                     /locus_tag="PXC99_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HDL5416581.1"
                     /translation="MVWFKNVMIYKLTGELALESNSLNELQQETRFTPCSQHDMSKFG
                     WATPLTGSDLLHFSQANQFLLISHKEDKLLPANVVKAETEQRIAELEEKEARKLKKTE
                     KQAVKDQVVSALLPRAFSKHQFTALWLDLDNQLVYVDAASSKRAEDTLALLRKTLGSL
                     PVVPISFTLPPAEVMTNWIAKGHTPSWLNLLEEAELKSFDTDSIIRCKRQDLETEEIA
                     RHLQAGKFITKLAIEWEGHFNCVLNEDATLSRLKFADEVREKNDDILKEDVAQRFDAD
                     FLLMTEELKLFTEKMIAEFGGIKSRI"
     gene            3459..4064
                     /locus_tag="PXC99_000078"
     CDS             3459..4064
                     /locus_tag="PXC99_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-phosphoglucomutase family hydrolase"
                     /protein_id="HDL5416582.1"
                     /translation="MLDQTIIDQYDALIFDMDGTLIDTMPSHAKAWEKVGEVLGYPIN
                     PKPMYELSGSTTFVIAREIMQRSNIPEHYFEQVVQLKREFGIEMVLANATLLPAFEII
                     KANVGKKPMAIGTGSHRAMVELLDQKFNLRQYVSVIVDSDDVSNHKPAPETFLKCAEK
                     LGIAPHRCLVFEDADLGVQAALNGNMNVFDVRTNTITHSTR"
     gene            4080..4871
                     /locus_tag="PXC99_000079"
     CDS             4080..4871
                     /locus_tag="PXC99_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF998 domain-containing protein"
                     /protein_id="HDL5416583.1"
                     /translation="MKTEWIKHLIQQLTTLSKAIENYFTSGSFGVKFYPFLMHPCFRK
                     SCAFLIFIIAMVSSFSGLFYLVAEHITILFSERSLTTYFHHSTLELMIPVGTMIDEKI
                     SELSPLSVVMRSMFVLQAVVFFFIYAIGITHIAHNKLRVIGLLLSLCFAIGCSLVAGI
                     QPSSRGEFGIYNLGASITFLIGNLTLIIAGFDLYHPSMQFFKRFSIGAGVIGAICILI
                     TIFLPTLFSPLIERAGIYTIMLWEILAGFAIIKRLLKLPSFRQQG"
     gene            4875..6017
                     /gene="argE"
                     /locus_tag="PXC99_000080"
     CDS             4875..6017
                     /gene="argE"
                     /locus_tag="PXC99_000080"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HDL5416584.1"
                     /translation="MKQIPFIQRYAQLIELPTISSLVAEEDLSNRRLIELLATWLADF
                     GFKTEILAVEGSRNKYNLLATYGEGEGGLLLAGHTDTVPFDEGKWRFNPFQLTEKAGK
                     LYGLGTADMKGFFAFVVEVVSQLDLTQIKKPIRILATADEETTMLGARTFAQHSHIRP
                     DCAIIGEPTSLKPIRAHKGHIGESVRITGRSGHSSDPAKGINAIELMHQSIGYLMKMR
                     DELREKYHNPLFQVTHPTMNFGNIHGGDAINRICACCELQFDMRPLPNMAVQDLYAMV
                     NEHLKPMLEQYGDLIEIRHLHDGIPGYECEHSAQIVQVVEKLLGEKCDAVNYCTEAPF
                     IQQLCPTLVLGPGSIEQAHQPDEFLEMKYIEPTKELLTKLIYHFCG"
     gene            complement(6164..6451)
                     /locus_tag="PXC99_000081"
     CDS             complement(6164..6451)
                     /locus_tag="PXC99_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5416585.1"
                     /translation="MPKSWELSLTARSNVIEILQSVEDYTGHWLSAVSLWEQLQNKLD
                     LIAFMPTIGRRREDGTLETFCRNYRIVYEIHLEKVYIITIIHSRRLYPRPS"
     gene            complement(6444..6635)
                     /locus_tag="PXC99_000082"
     CDS             complement(6444..6635)
                     /locus_tag="PXC99_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416586.1"
                     /translation="MLFKEQGYDEFLAEQIKAGQEAIARGETFTKEQINNELNHLFAD
                     MQKRQQLRENENLFEVNYA"
     gene            complement(6925..7515)
                     /gene="yraP"
                     /locus_tag="PXC99_000083"
     CDS             complement(6925..7515)
                     /gene="yraP"
                     /locus_tag="PXC99_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divisome-associated lipoprotein YraP"
                     /protein_id="HDL5416587.1"
                     /translation="MNKLANKLLKGSLLVLGFISLQGCITTAVVTSAAVATKVATDPR
                     TTGTQVDDEILEEKVAYNINKDEQIKQEARINVVAYNGKVLLIGQAPSMDVVENAKNL
                     AAGAEGVTEIYNEIRQGEKIGFGQITQDSWITTQVKSKLLVNSEVKATEVKVVTENGE
                     VFLMGKVSQNQADAAAEAARNVGGVTKVVKVFSYAQ"
     gene            complement(7525..8109)
                     /locus_tag="PXC99_000084"
     CDS             complement(7525..8109)
                     /locus_tag="PXC99_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HDL5416588.1"
                     /translation="MLNKIQDRFTESIQTQISASELLPAKLSEAANRIVACLLRGDKV
                     IVCGHGRSYGNAELLVSHLLHRYELARPSFAAVQLQLSGVLAGVVAQDNELEAVYKKQ
                     LQAVAKEGDLFIVFSPVGNEECILQAIHTAKNQHLDLDIIALTGSNNDHTLGLLDESD
                     IEISAPSTNQLRVIESHHFYVNLLCELIDHLLFS"
     gene            complement(8115..8486)
                     /locus_tag="PXC99_000085"
     CDS             complement(8115..8486)
                     /locus_tag="PXC99_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HDL5416589.1"
                     /translation="MELFNKLINKREQGSFYEQKARVFLEQQGLRFVAANQAFKGGEL
                     DPIMQDGQTVVFVEVRQRKSNRFGSAVESIDYRKQQKWQNAANMWLLKQNQSLETANC
                     RFDVVAFEGNQTPVWIPNFLG"
     gene            complement(8461..10182)
                     /locus_tag="PXC99_000086"
     CDS             complement(8461..10182)
                     /locus_tag="PXC99_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator"
                     /protein_id="HDL5416590.1"
                     /translation="MATILNHTMKKALVPTAIALFISACTSVNPVTESIKNEAYSSSE
                     FYINKADQTKEAEDKISYQLLAVRKLIDENKEYEAQNTFSEILTAEMNEVQKLEYALV
                     SAQLAALQGKNEQATSQLKAIQDPLLSSAQRLRYIQTQARIAANQKDVIGIVRARSQL
                     NNFYKMNRERQENNDIIWQTLRDANRGMLEKTVPEAGEMELAGWLALINIYNQNVTTP
                     AQMPQAINNWKAQYPSHSAVAVMPTELQGVSNFQQTQLNSVALLLPLSGDAKILGDII
                     KRGFNDAKADDSTAVQTFDTDSSDVNSLISQAKQQGANVIVGPLLKSRVDEMLLSPEI
                     QNVNILALNATENVRNIAQVCYYGLSPESEAQSGAEKIYQDGNSVAIVAAPQDDYGNR
                     SAEAFAKRWRQLTNSDADVRYYNQPLDAVAAIQNAGVSKAALYILGNAEQVLEIKQGI
                     DSSTLKDRLAIYTSSRSNSPNNGIDFYTSMEGVKFSEVPLLADQSSSEYKKAENLANS
                     DFSMMRLYAMGADAWSLATKFNEFRHIPGYKISGLTGELKAGQHCNIERSLSWMQYRN
                     GAIQQAY"
     gene            10256..11128
                     /gene="rsmI"
                     /locus_tag="PXC99_000087"
     CDS             10256..11128
                     /gene="rsmI"
                     /locus_tag="PXC99_000087"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HDL5416591.1"
                     /translation="MKNRQNSSGINPNYGILYIVATPIGNLGDITQRALDTLSSVDLV
                     AAEDTRHSGLLLSHYGIKKPFFALHDHNEQQKAVVLVEKLAKGENIALISDAGTPLIS
                     DPGFHLVRHCRQAGVKVVPIPGACAAVTALCASGIASDRFCFEGFLPAKTKSRCDKLT
                     ELENEPRTLIFYESTHRILDTLADMQTVFGEDRYVVMAREITKTWETIYGDQLGNLIE
                     WLNEDSNRIKGEIVLVVEGKPQSSEEAFSSQAIKLLTLLCQELPLKKAAAIVAETFGY
                     KKNALYQYGLEHFE"
     gene            complement(11373..12539)
                     /locus_tag="PXC99_000088"
     CDS             complement(11373..12539)
                     /locus_tag="PXC99_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5416592.1"
                     /translation="MTNLLLAIIYLSFISLGLPDAILGSAWPSMHQQLAVPLSYAGVV
                     SMIMSIGTITSSLMSDKLTYHLGTGKVMVISVALTALALWGFSISDAFWILCLWAIPY
                     GLGAGAVDAALNNYVAVHYASRHMSWLHCMWGVGASIGPHILGYALLQGRGWEAGYFT
                     ISMLQIGLTLMLFCSLPFWKLRKQITAEINHSAKPMSLKETLKIPGVKYGILAFFGYC
                     GVEQTAGLWASSYFVMVKDVGLEQAAAFGSIFFIGITVGRGVSGFLTLKFSNRQMIKL
                     GSALILVGIAILCLPLGKYVTLASLIIIGLGCAPIFPCLIHSTPAFFGEDKSQSVIGV
                     QMASAYIGVLLLPPIFGFIANAISIQLLPLYLLLMFAIMAYAYRNLVRETSPSP"
     gene            complement(12691..14205)
                     /gene="putP"
                     /locus_tag="PXC99_000089"
     CDS             complement(12691..14205)
                     /gene="putP"
                     /locus_tag="PXC99_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HDL5416593.1"
                     /translation="MFGLDPTTIMFVVYILGMIAIGFIAYRVTNNLSDYILGGRRLGS
                     FVTALSAGASDMSGWLLMGLPGAVYAGGLIEGWIAIGLTIGAYLNWKLVAGRLRSHTE
                     HSGDALTLPEYFHNRFGDKTRLIKILSAVIFLLFFAIYCASGVVAGARVFENLFGLPY
                     HQAIWYGAVATILYTFIGGFLAVSWTDTIQASLMVFALILTPFFVMYNLGGFDEMQAL
                     IDRAGEMAQKDYNDIFTGTSVLGIISLMAWGLGYFGQPHIVVRFMAAESVKSLENARR
                     ISMTWMIICLLGAIGIGYFGMAYFFGNPEQVGNISKNPEQIFIELAKLLFNPWVAGIL
                     LSAILAAVMSTLSAQLLICSSAITEDLYKGILRPQASDKELVWLSRLMVLAVAALAIY
                     IAQDPDSKVFGLVRNAWAGFGSAFGPVVLLSLFWKRMNGFGAIAGMLTGALIVHFWGD
                     ITLKLALPEIYSMIPGFIAATLMIIVVSLITPMPSKAVLDTFDRANKAYLAEVK"
     gene            complement(14299..15087)
                     /locus_tag="PXC99_000090"
     CDS             complement(14299..15087)
                     /locus_tag="PXC99_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HDL5416594.1"
                     /translation="MNAKKEKESSGNQSLIRGLTLLELLAKFPNGCPLAHLAELSGLN
                     KSTVHRLLQGLQQEGYVRPAPTAGSYRLTTKCLAIGQRALSSINILHIAAPHLEALNL
                     TLGETVNFAMRENDHAILINKLEATTGMMRTRAYIGQQMQLYCSGMGKLFLAYGSADY
                     IPQYWQTKSDIIQKLTVNTITTIDGMQTELETIRRQGFAMDNEENELGVSCIACPIFD
                     HQQKVHYAISVSLSTARLNQLGRENLLPAIQETAEKISAELGGR"
     gene            complement(15084..15662)
                     /locus_tag="PXC99_000091"
     CDS             complement(15084..15662)
                     /locus_tag="PXC99_000091"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HDL5416595.1"
                     /translation="MNQSSLTDLRSQLRQSMRLKRQSLTAGQQTQAAESIIPQALSLI
                     ESYQASHIAFYLPFNGEISPIPLMEQLLQQGKKLYLPLLHPFTSGQLLFVNYNCKTIL
                     KFNRLGIQEPILDVRNILPLQELEMIFTPLVACDKAGNRLGMGGGFYDRTLAQAPHLI
                     SVGLAHECQQVEQLPIESWDMPLDHIILGAAK"
     gene            complement(15664..15855)
                     /gene="ssrS"
                     /locus_tag="PXC99_000092"
     ncRNA           complement(15664..15855)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="PXC99_000092"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(15960..16250)
                     /locus_tag="PXC99_000093"
     CDS             complement(15960..16250)
                     /locus_tag="PXC99_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HDL5416596.1"
                     /translation="MSANNIELQIFGQVLRLQCPVEQQEHLLASAQRLEERVVVLKEQ
                     SGIIQLEKVLAIVALNLNYELEQAQRQNAENKNVLVACIEQLDNSLGKFQSN"
     gene            16329..16886
                     /locus_tag="PXC99_000094"
     CDS             16329..16886
                     /locus_tag="PXC99_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein"
                     /protein_id="HDL5416597.1"
                     /translation="MAITDSQQFKQLVSQLQIDDTPAEFHGFLCGLIAGGIQDESWKT
                     LTYQFTNDGHAFSIEPLNTLTDFYQQLSESFSEANTLFSLWLPQNEEDGFALADGISE
                     WTNSFLLGLGVAQPKLQQETDEVGEAIDDLDEIAKLGYSDDDNNEELLEAGEEVLEYL
                     RVLALFLHSHFALGVPKTEEKPPLH"
     gene            16984..18048
                     /gene="hemE"
                     /locus_tag="PXC99_000095"
     CDS             16984..18048
                     /gene="hemE"
                     /locus_tag="PXC99_000095"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HDL5416598.1"
                     /translation="MSELKNDRYLKALLREPVDMTPVWMMRQAGRYLPEYKATRAEAG
                     DFMSLCRNADLACEVTLQPLRRYELDAAILFSDILTVPDAMGLGLSFGAGEGPKFARP
                     VASLNDVNQLPIPDPEDELQYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGS
                     SKAFTKIKKMLYAEPHILHKLLDKLADSVILYLNAQIKAGAQAVMVFDTWGGVLAHED
                     YKAFSLHYMHKIVDGLIRENEGRKVPVTLFTKGGGLWLEAIAETGCDAVGLDWTVDIA
                     DARRRIGDKVALQGNMDPSVLYASPERIEQEVKNILAGFGNGSGHVFNLGHGIHLDVP
                     VESPKVFVDAIHNYSKQYHK"
     gene            18195..18785
                     /locus_tag="PXC99_000096"
     CDS             18195..18785
                     /locus_tag="PXC99_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF416 family protein"
                     /protein_id="HDL5416599.1"
                     /translation="MRNPIHKRMERFEPWQNTTFMACLCERMYPNYQLFCEVTEQPEK
                     AKVFQNILNLVWEYLTIKGAKINFDNQLEKLEEIIPDVNEYAFFGVLPAQEACEALSE
                     LLHSIIAGSTLEQAIRISQISLGTVASYLEMQQDKELNEQELKNSEEIQEELDVQWQI
                     YRLLNECEKRDLDLIFELKDEIRSSGISNIGLNINQ"
     gene            18921..19193
                     /locus_tag="PXC99_000097"
     CDS             18921..19193
                     /locus_tag="PXC99_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005819506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HDL5416600.1"
                     /translation="MNKTELIDAIAAGANLTKKDAKAALEATLDAISASLKAGDAVQL
                     IGFGTFKVNERKARTGRNPKTGEEIKIAAAKVPAFVSGKALKDLVK"
     gene            complement(19282..19842)
                     /locus_tag="PXC99_000098"
     CDS             complement(19282..19842)
                     /locus_tag="PXC99_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416601.1"
                     /translation="MKKSFLSLLVLGTTMALAACDQAKEAAQSTTDKAVEVKEAVAEK
                     AAEVKSATEAKVEELKAAANDAAQATADKTEEAKKAVAEKATELKTTTEAKVEELKAA
                     ANDAAQATTDKTEEAKKAVAEKAAELKATTEAKVEELKAAASDATQATADKAEEAKKA
                     VAEKAAEVKVETETKVEEMKKAIESK"
     gene            complement(19988..22930)
                     /gene="rne"
                     /locus_tag="PXC99_000099"
     CDS             complement(19988..22930)
                     /gene="rne"
                     /locus_tag="PXC99_000099"
                     /EC_number="3.1.26.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E"
                     /protein_id="HDL5416602.1"
                     /translation="MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKG
                     KITRVEPSLEAAFVDYGAERHGFLPLKEISREYFPSDYVFNGRPNIKDIIQEGQEVIV
                     QVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERLELKEALDCLDV
                     PEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAI
                     RDYLRRDIGEILIDNKKVFEKAKNHIRLVRPDFINRVKLYEGEVPLFSHYQIESQIES
                     AFQREVRLPSGGSIVIDVTEALTAIDINSSRSTRGGDIEETALNTNLEAADEIARQLR
                     LRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARIQFARISRFGLLEMSRQRLS
                     PSLSEASSHICPRCQGTGKVRDNESIALSILRLLEEEAIKENTAQVHTIVPVQIASYL
                     LNEKRKAISSIEKRHDVQIVVVPSESMETPHFSVYRLRENEITPTLSYDLTKHYEARH
                     EEEHPHHHHQEDVLVTRNEPVITVESVLQSSELNLQPSPTPTEPPKPSLLSRLIATIK
                     GWFSEEKVEEKPKPKARNQRERRQRRERPNRNAKAENQERKTPQAQTTPAEEKPMRSE
                     KKARRAVVEEVSGVTEQESRSNSREVQTERRQRRDLRKKVRIETQEVEVENLTPAVEE
                     TVAKQVENVQKNQQIQPLATQEVPVETAPEVETTNEGRENNRQRRLPRHLRVGNQRRR
                     ENQRNQVISPMPLTSAVASPELASGKVWVQVTSTVKVEEKASFLSVDQMLEQQENQLV
                     ETEKKSEEKKLHTVSPLGGFVAQATNRDLVKEKQEQLSKPKEEKVASEDVKPVEVKEH
                     IAPFGSVVAQHSERDLVKEKNERVSKFQSQATVAPAIVEEVTNPIEVPKSTYESDYRF
                     NGRLGTFSRVEHTQAAMTIASAPSDKLEVVEISQWQNSKYYFYGKGFGGYTSAVSQVQ
                     SAPRSTNG"
     gene            complement(23387..24232)
                     /locus_tag="PXC99_000100"
     CDS             complement(23387..24232)
                     /locus_tag="PXC99_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HDL5416603.1"
                     /translation="MMSQEQFEEINQERRQALNHGSRIAMAASVLGALGIASTANAKQ
                     ASAEKSPYAEPEQYGLKRHGMTIDPKRVALVVVDPQIDFLGPKGVMWGVLGDSIKENN
                     TVANIESLFKAAKAVDMPTFVSPHYYYPTDHKWEFGSPGEHFMHDSGMFARKGQYTME
                     GFENSGADFMPEYKPYIFDGKTVITSPHKIFGPETNDLVLQLRKRKIDQVILAGMAAN
                     LCIDSHLRELIEQGFEVTVVKDATAGPRIPEGDGYLAALTNYRIIANDLWTTEEAVKK
                     MTAKA"
     gene            24359..25183
                     /locus_tag="PXC99_000101"
     CDS             24359..25183
                     /locus_tag="PXC99_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5416604.1"
                     /translation="MDSLTHLFTQFQFRTDLFHLGQLCQIGSFNEENKGYLHFVRQGR
                     FILNQAAERPITIERPAIIFSPTNILHSLHPLDDSGLDIFCINFDFGKGIRNPLTHTL
                     HNIVILELAQYPELGVLADQIFSEVNQKGCGYQAMIHHLCAYFTLKVARQCLEKGYIQ
                     TGLLKGLADKQLGKVLLAIHNAPERDWNVEELANVALMSRSRFAAYFKQTMGVSPMDY
                     LTNWRLAVAQHLLQKGIPVALVAEQVGYSHNAALSRVFMRELGLSPTEWLAQNKES"
     gene            complement(25268..26731)
                     /gene="ubiD"
                     /locus_tag="PXC99_000102"
     CDS             complement(25268..26731)
                     /gene="ubiD"
                     /locus_tag="PXC99_000102"
                     /EC_number="4.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-polyprenylbenzoate decarboxylase"
                     /protein_id="HDL5416605.1"
                     /translation="MKYKNLREFLDFLESQGELVRIQQEIDPYLEMTEIADRTLRKGG
                     PALLFENPKGYQMSVLCNLFGTPKRVALGMGQEDTKALRELGKLLAFLKEPEPPKGFK
                     DLIGQLPQWKQILNMPPKVLSKADCQQVVISGDEVDLYKLPIMHCWPGDVAPLVTWGL
                     TITQGPYKKRQNLGIYRQQLIGKNKLIMRWLSHRGGALDFQEWKAENPGKPFLVSVAI
                     GADPATILAAVTPVPDTLSEYAFAGLLRGHKTEVVKSISNELEVPASSEIVLEGYIDL
                     EETALEGPYGDHTGYYNEQEYFPVFTVTHITMRKDAIYHSTYTGRPPDEPAVLGEALN
                     EVFIPILQKQFPEIVDFYLPPEGCSYRLAVVTMKKQYAGHAKRVMMGVWSFLRQFMYT
                     KFVIVCDDDVNARDWKDVIWAITTRCDPARDTTLIEHTPIDYLDFASPIAGLGSKMGI
                     DATNKWAGETTREWGTPIEKDDNVVKRIDEIWDSLGI"
     gene            26868..27842
                     /gene="znuA"
                     /locus_tag="PXC99_000103"
     CDS             26868..27842
                     /gene="znuA"
                     /locus_tag="PXC99_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein
                     ZnuA"
                     /protein_id="HDL5416606.1"
                     /translation="MFKRTLIGLAVLGASVAQADVLTSIKPLGFIASAITEGVTETKV
                     LLPVTASPHDYSLKPSDVTQLQSAQLVVWVGDGLEGFLEKSIEKLPREKVLTLEDVDA
                     IDDIVDKASKKEDKDDDHDHKHEHKHEHKHEHKHEGHNHEGHNHDHHGHSHDEDWHIW
                     LSSEASELAAEQIAARLSEQMPEHKAKIAENLAKFKANLTAKKAEIAKQLEPVKAKGY
                     YTFHDAYGYFEREYGLNSLGSFTINPTVAPGAKTLTAIKKNIAKNKAQCLFAEPQFTP
                     KVIETLAKETKVNVGQLDPLGAKVQLSATAYPEFLQVLADEFSQCLTK"
     gene            complement(27894..28214)
                     /locus_tag="PXC99_000104"
     CDS             complement(27894..28214)
                     /locus_tag="PXC99_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhnA domain-containing protein"
                     /protein_id="HDL5416607.1"
                     /translation="MIYPTCPECKSENTYHDSIQFVCPDCAYEWTGEETDQDDDVLIV
                     KDSNGNLLSDGDDVLLIKDLKLKGSSEVLKKGTKFKGIRLAQGDHNVDCGKIMLKSEF
                     LKKA"
     gene            28355..30718
                     /gene="rnr"
                     /locus_tag="PXC99_000105"
     CDS             28355..30718
                     /gene="rnr"
                     /locus_tag="PXC99_000105"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HDL5416608.1"
                     /translation="MIVDPNYQQELEKYENPVPSREFILNTIREHNAPMSRDELLSAF
                     HIDDEERMEGIRRRLRAMENDGELVFTKGKRYALPEKMDLIKGTVIGHRDGYGFLQVE
                     GHEKGATKSEDWFIPNAQMVKVMHGDFVLAQPNGTDRRGRKEVRIVRVLEARKKQIVG
                     RFFLESGIGFVVPDDSRVNQDILIPDEHRMGARMGQVVVVELQERKASFSRPVGIITE
                     ILGDNLAPGMEIEIALRNHDIPHIWPEGVEKQIRQFSSEEVPEEAKQGRVDLRDLPLI
                     TIDGEDARDFDDAVFAKKEGNGWRLWVAIADVSYYVRPKTALDLEALNRGNSVYFPNR
                     VVPMLPEVLSNGLCSLNPQVDRLCLVAEMSVSSKGELQDYQFYEAVMNSHARLTYTKV
                     WKMLEGDEALRERYAPLVPHIEELYAMFQTLMKARHKRGAIEFETIENQFIFNPQGRI
                     ERIEPLIRNDAHKLIEECMILANIAAARFVEKANEPALYRIHDKPSEEKLLSFKSFVR
                     ECGLTWDVGLDPTPKDYGVLLEQIAERADKELIQTMLLRSLKQAVYAADNIGHFGLAL
                     TEYAHFTSPIRRYPDLLLHRAIKYLIEKGKGNTRYYTDGGGYHYKLDDMDEFGDKCSA
                     TERRADEATREVADWLKCEFMQDHLGEEFDGVISSVTGFGLFVKLNELLIDGLVHIST
                     LDNDYYHYDADRQRLIGGSGIIYRLGDAVRVKVINVNLDEKKIDFELLTGNKKTGKTA
                     KKKAKATEVPVFKEPKTVKKAKKVAEKKPAKSAKKRTKTTASKSRKK"
     gene            30722..30988
                     /locus_tag="PXC99_000106"
     CDS             30722..30988
                     /locus_tag="PXC99_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416609.1"
                     /translation="MDYKKQILFSLLFALVIAIISYFLFTYIPFDCSDLSKLNDSQRL
                     ECRTAEFLGVYYWLPHTTTLFFGSVLLYWAVYGMISLVQAVLKR"
     gene            31211..31669
                     /gene="mraZ"
                     /locus_tag="PXC99_000107"
     CDS             31211..31669
                     /gene="mraZ"
                     /locus_tag="PXC99_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HDL5416610.1"
                     /translation="MFRGASSISIDSKGRIAIPTRYRAELLEKHHGILVCTVDIRQPC
                     LLLYPLHEWEMVEQKLLALSNFDPVQRRIQRVMQGFATECEMDSAGRILLSPTLRQHA
                     QLEQQIMLVGQLNKFEIWQDKQWQAQIAEDLAFGSSAEILDCEALKNLSL"
     gene            31685..32623
                     /gene="rsmH"
                     /locus_tag="PXC99_000108"
     CDS             31685..32623
                     /gene="rsmH"
                     /locus_tag="PXC99_000108"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HDL5416611.1"
                     /translation="MSENPKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSK
                     LGENGRLIATDRDPRAIAEAQTISDPRFQIEHTAFSAIPELCERMGLVGKIDGILLDL
                     GVSSPQLDEAERGFSFMRDGPLDMRMDTTKGLSAAEWLAQVSAEDLAWVLKEFGEERF
                     AKRIAQAVVSYNKSANEKISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINGEL
                     DELEKALNSALTVLAPEGRLSIISFHSLEDRMVKQFVRKHSKGMDVPRGLPILEAELT
                     KNIPLKTIGKAIMPSEAEIEANARSRSAVLRIAEKR"
     gene            32642..32953
                     /gene="ftsL"
                     /locus_tag="PXC99_000109"
     CDS             32642..32953
                     /gene="ftsL"
                     /locus_tag="PXC99_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HDL5416612.1"
                     /translation="MSNERYPLHQIIIDDIFSHNKVALLLLIGVVISAVATIWITHQT
                     RLSVSEQGQLIQANQKLESQYTNLQLEENSRSSRARVDAAAKSFGLQPIKKEQEIILV
                     E"
     gene            32957..35017
                     /locus_tag="PXC99_000110"
     CDS             32957..35017
                     /locus_tag="PXC99_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsI"
                     /protein_id="HDL5416613.1"
                     /translation="MVKSVKLKRKQEAPVAKAEPQQAEGKKTPSFLPTRFRVVVFFML
                     LMVGGLLAQTAYIQLFDSERLIKEANNRSLRTKELQFTRGRILDRNGRFLSISVPMYS
                     LTLDPREYFDTKLRRSNESWRALAIEMETSKGKIEANVNKFIEKKNFSKEKVDFDPRS
                     ILNTKSEGYWTQLAQVTGLDYNSLIEKVRNNPSSVFLRLDNENLVRERQKFQALSKEI
                     GRSYNDIMDELYSKNRQRFLYLSRHQSEAISEYAKELDIDALVIKVESRRFYPLAEES
                     SQLIGFTDKDDMHGSEGLERSFDSLLIGKNGKQIIRKDAKGNIVENIRSEKQYDPQDV
                     MLSIDEELQSMVYGEIKKAVQENNAESGTAVLVDVQTGEILAMANAPSFNPNKRDSFK
                     PELMRNRAITDTFEPGSTVKPFTVLTALQNGVTYRDEVIGTRPFVVNGHTIKDVAPRD
                     SLTLTGILQKSSNIGVSKLALRMPANALVDTYTKVGFGKDTGLGLGEQRGTNGDRKRW
                     ADIERATLSYGYGLNVTPLQLARAYATLGSFGLYRPLSITKVDPPVIGERVLPEKTTR
                     DVVHMMESVAAKGEGGHRAAVDGYRVAIKTGTARKLEKGKYVEKYIAYTAGLAPASDP
                     RFALVVLINEPKAGNYYGGFVSAPLFSRIMGYTLKQRNIKPDNLTENTQSAVREIKLE
                     RPIN"
     gene            35026..36516
                     /gene="murE"
                     /locus_tag="PXC99_000111"
     CDS             35026..36516
                     /gene="murE"
                     /locus_tag="PXC99_000111"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HDL5416614.1"
                     /translation="MKRLLPFLTELDAWVEELTELKQMTLDSRQVQAGDLFVALKGHQ
                     VDGRKFIPNAIEQGAAIILAEADEDQPEIELDPKFAKFNLDRTACCKVVSVPRLPKLL
                     SEIAGALYHNPSHKLTLAGITGTNGKTTTAQLLAQWHNLLGGKSAVMGTIGNGLYGQV
                     QEAVNTTGSAIEIQHNLANFVELGADFCAMEVSSHGLAQFRAEALDFDLAIFTNLSRD
                     HLDYHNTMEEYAQAKFRLFNELSTKAQVINADDEIGREWLTQLPNAVAVSTDPKFAGN
                     HQFVKATAVKFTLQGASIAFESSWGNGELHSRLIGAFNVNNLLTAFAGLLALGFDIQE
                     LVKTAPNLVGVAGRMECITAPNKPMVIVDYAHTPDALEKALQAARLHCEGELWCIFGC
                     GGDRDAGKRPLMATIAEKLTDKVIATDDNPRTEDNQKIMADIVKGFSKPQQIIHNREE
                     AIKTAIEQAKATDVILIAGKGHEDYQIIGTEKLHFSDQETARKYLF"
     gene            36604..37998
                     /gene="murF"
                     /locus_tag="PXC99_000112"
     CDS             36604..37998
                     /gene="murF"
                     /locus_tag="PXC99_000112"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HDL5416615.1"
                     /translation="MIKLTTQQIAEILNAKLIGNGETVVETTSTDTRQAVENGLFFAL
                     KGENFDAHHYLQNAVAQGCVAVVVERECEIDVPQLVVADTRLALGELAKWLKAKLNPK
                     TVAMTGSSGKTTVKEMTAKILQKMTACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYA
                     VIELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENG
                     KAIVNLAFYYPQWQKEIGSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQ
                     GEIAIDLPYLGKHNVSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHC
                     LFIDDTYNANVDSMKSAISVLENYPAYRIFAVGDMAELGEESSKCHQEVADFAKNAAL
                     DLIVSFGKESAVISQQAEHHFTDKQQMVDFLLPIILQKIEQKQPLVLLAKGSRSQKME
                     TVISELCKPFNLNF"
     gene            38019..39101
                     /gene="mraY"
                     /locus_tag="PXC99_000113"
     CDS             38019..39101
                     /gene="mraY"
                     /locus_tag="PXC99_000113"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HDL5416616.1"
                     /translation="MLVWLAELLVQYNTAFNVVSYITFRAIMALLTAMGIGLWIGPKV
                     IRRLQILKFGQEVRNDGPESHFKKRGTPTMGGVMILAAIGVSTLLWADLRNSYVWFTL
                     FVLFGYGAVGFVDDYRKISRKNTDGLIARWKYFWLSAIALVAVFGMYAVGKDTAATQL
                     VVPFFKDVMPQLGLFYIVLSYFVIVGTSNAVNLTDGLDGLAIVPTIMVASAFALIAWA
                     TGNFNFAQYLHIPFIPNAGELVILCTAIVGAGLGFLWYNTYPAQVFMGDVGSLSLGGA
                     LGVIAVLVRQELLLVVMGGVFVVEALSVILQVGSYKLRQKRIFRMAPIHHHFELKGWS
                     EPRVIVRFWIITLMLVLVGLVTLKLR"
     gene            39165..40466
                     /gene="murD"
                     /locus_tag="PXC99_000114"
     CDS             39165..40466
                     /gene="murD"
                     /locus_tag="PXC99_000114"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HDL5416617.1"
                     /translation="MQKQYENKTVTIIGLGTTGLSCVDFFKKKNANIQVIDTRANPAG
                     ADKLDVTIPLHTGGLNSEWLLKSDLIVISPGLAVATPEIQQAIQAGVEIVGDVELFCR
                     EAKAPIIAITGSNGKSTVTTLTTEMAKQAGIKVGMGGNIGVPVLSLLEGDYDLFVLEL
                     SSFQLETTYSLKAKAATVLNISEDHMDRYDSIADYRQAKLRIYDNAENIIVNGEDAQT
                     YPIQAVKKVIRFAEQNAEYSLRNQMLYSGDDAIIQTKQMLISGRHNEMNALAAMALAE
                     AANVPREGIVKALQIYGGLPHRFQAVATNDGVRWVNDSKATNVGSTVAALNGLNIAGT
                     LYLLLGGDGKAADFSELKPLINKPNIVCYCFGQDGAALAELSEQSVLVETMQQAIEAI
                     RPQLKKGDMVLLSPACASLDQFKNFEQRGEVFMALAQGQHA"
     gene            40466..41644
                     /gene="ftsW"
                     /locus_tag="PXC99_000115"
     CDS             40466..41644
                     /gene="ftsW"
                     /locus_tag="PXC99_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HDL5416618.1"
                     /translation="MLERIKSEWDKWVRLTPSNSLYDRTLIWLFLGLLIIGFVMVTSA
                     SLPVSTRLNNDPFYFAIRDGLYIIASIIFCYVFVQIPIEKWEKHNLALFFISIGFLIA
                     VLIFGRSINGAVRWIPLGILNFQPAELAKLAVICYFASFYVRKYDEIRKEKASFWRPA
                     VILFLFGFLLILQPDLGSTFVLFVLTFSMLFIVGAKIMQFMFLGVVGTVLFAVLILTS
                     EYRLKRVTSFMDPFADAYGDGFQLSNSQMAFGQGEFWGQGLGNSVQKLEYLPEAHTDF
                     VMAVIGEEFGFFGIACIVLLLILLTVRALKISKESLVLEERFKGYMAFGIAIWVFLQG
                     FVNLGVASGLLPTKGLTFPLVSYGGSSLVIMSIAIAVLLRIDHENRAERIGHAKIKTI
                     "
     gene            41763..42818
                     /gene="murG"
                     /locus_tag="PXC99_000116"
     CDS             41763..42818
                     /gene="murG"
                     /locus_tag="PXC99_000116"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HDL5416619.1"
                     /translation="MAKKLLVMAGGTGGHVFPAIAVARELQKQGWQIRWLGTKDRMEA
                     TLVPKHGIEIDFIEISGLRGKGVAALLKAPFAIFKAVMQARKIIKNYQPDAVLGMGGY
                     VSGPGGIAAKLCGVPVILHEQNAVAGLTNVWLSKIARKVLQAFPTAFKEAEVVGNPVR
                     EDLSALPLPNERFAKRGYPINILVMGGSQGARVINQTVPEVAKVLGNNVFISHQVGKG
                     NLAGIEEVYQQTGNGIASEFIDDMKAAYEWADLVICRSGALTVCEIAAVGLPAVFVPF
                     QHKDRQQFLNANYLAADGAAVIIEQSDFTPKALQQALEPLIANRQLLLDMSMRARAKS
                     TPMAAKRVAEVIIQEAN"
     gene            42894..44321
                     /gene="murC"
                     /locus_tag="PXC99_000117"
     CDS             42894..44321
                     /gene="murC"
                     /locus_tag="PXC99_000117"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013527829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HDL5416620.1"
                     /translation="MKNFQDKVKKLVPEMRRVSQIHFIGIGGAGMSGIAEVLLNEGYQ
                     ISGSDIADRAVTQRLSAAGAKVFIGHQAENIAGASVVVVSTAIDETNPEIIAAREARI
                     PVIRRAEMLAEIMRFRHGIAIAGTHGKTTTTAMISMIYTEAKLDPTFVNGGLVKSTGK
                     NAHLGASRYLIAEADESDASFLHLQPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFLR
                     NLPFYGLAVMCADDETVMEIAPRVGRQVITYGFSENADYRIEDYQQTGFQEHYTVVCP
                     SGERIDVLLNVPGMHNALNATAALAVAKEEGIGNEAILAALADFQGAGRRFDQLGSFI
                     RPNGKIMLVDDYGHHPTEVDVTIQAARSGWEGKRVVMIFQPHRYSRTRDLFDEFVQVL
                     SKVDALILLDVYAAGEAPIVGADSKALARSIRNLGKVDPILVSDTDQLGEVLDQIIQD
                     GDLILAQGAGSVSRISRGLAESWKN"
     gene            44411..45322
                     /locus_tag="PXC99_000118"
     CDS             44411..45322
                     /locus_tag="PXC99_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HDL5416621.1"
                     /translation="MSIKNEKIAVLFGGVSQEREVSLNSGAAVTAALKSLGYNVEGID
                     TKEFPIEKLKEKGIQRVFNILHGGIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFR
                     TKLLWNAVGLPTADMVVVQRGQAVDFDQIIAKLGLPVFVKSSCEGSSVGVFKVKTKEE
                     LAPAIHEALKFDSIVLVEEFLAGNEYSVPVLDGQVLPAVQVIPDGEFYDYHAKYVSDN
                     TQYVVPALNDERQAEVAKLVKAAYDVVGCRGWSRIDVMEDGEGKFRLVEVNTNPGMTS
                     HSIFPKSAATVGISFEKLVERVLELSA"
     gene            45322..46113
                     /locus_tag="PXC99_000119"
     CDS             45322..46113
                     /locus_tag="PXC99_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HDL5416622.1"
                     /translation="MGIFRKKNSTNVRLNVLNPKTPVSPRKWLVFIKPLIVLLCTLFV
                     FGVYSNWQNILESWDKTPIRAYALTHKTQFTTNADIRETLSKEPALKGYFGQNIQEVK
                     DKLLSIPWVKDVAVRKLYPDRLSITLLEHKPVAIWNDTNFVSEQGTVFSLPKDRIDKN
                     GLPLLYGPDTEGKSVLEAWNKIRADLNARNLDLTSVSVDNRGSWTIRLSNQVELRLGR
                     GEWTSKIDRFVTIFPEIHIPEGNRLAYVDLRYPHGAAVGFSPIKN"
     gene            46136..47407
                     /gene="ftsA"
                     /locus_tag="PXC99_000120"
     CDS             46136..47407
                     /gene="ftsA"
                     /locus_tag="PXC99_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HDL5416623.1"
                     /translation="MTKAVESKIIVGLDIGTSKVVAVVGEVLPDGVINVMGAGVCPSK
                     GVDRGGVIDLDAAVNSIQRAIEQAESIADCQIMGVTLAISGQHIVGLNEAGSSTLSGG
                     IVTQDNIESAVDMAKAIKLQDGLETLHMIPQEYHVDRLPATKNPIGLSGMRLQVQAHL
                     IACHQAWLKNLKNAVEHAKLKVDQVVFSGLASSYSVLTEDEKELGVCLIDIGGGTMDV
                     LVYTDGALRYSKVIPFAGNNITDYLARVFTTSRPEAESLKVGYGSAISPPTHNSDKKI
                     EVAGLGGRMARTFTRAQVATVTSQCYNDLLKVVEEELTQLRHELFQKGIKQELIAGVV
                     ITGGGSQIEDIVECAKSIFGSQVRVGYPLNITGLTDYVNKPQYATALGLLQYSHYNYT
                     EQGTSTDSNEDIFAPIGRGTKKIIDFFKSKF"
     gene            47440..48687
                     /gene="ftsZ"
                     /locus_tag="PXC99_000121"
     CDS             47440..48687
                     /gene="ftsZ"
                     /locus_tag="PXC99_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HDL5416624.1"
                     /translation="MFEPIIEQTQDAIIKVVGVGGGGGNAVDRMSRSADDIKGVEFFD
                     VNTDAQVLRKRTTRQTIQIGASTTKGLGAGADPMVGKQAAEEDREAIANALKGANMTF
                     IAVGMGGGTGTGAAPVVAQIAKEQGSLTVGVVTKPFRFEGPRRMRFADQGIKELSQYV
                     DSLIIIPNDKLRGLGKQTTAVDAFAAANDVLSNCVLGITNMITSSGGSTGADINVDFA
                     DVRTVMSGKGHAMIGTGFAEGEVGEGRAEKAMNDAISSPLLENVDISGASGMLINISA
                     GTDFLLEEVYAMMDLIYGFATEDAAIVFGCNYYPEMDGKVSVTLVATGIGQPEEALHM
                     PHKAQPVYAQQGNHVQATQPTQPNHAVQQPNFTQPSSYGQPNQFSGQPQPLQQPVAPK
                     PQSVDTAQIFNPNSIPGFMRNSQ"
     gene            48719..49639
                     /gene="lpxC"
                     /locus_tag="PXC99_000122"
     CDS             48719..49639
                     /gene="lpxC"
                     /locus_tag="PXC99_000122"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HDL5416625.1"
                     /translation="MTKQRTLKQAAKVTGIGLHSGKKVTLTLRPAPANTGVIYARTDL
                     EPVVYFPASADSIRDTQLCTCMVNDDGVRISTVEHLNAAMSALGLDNVIVEVDAPEIP
                     IMDGSSSPFIYLLLDAGIEEQDAPKKFIRIKETVRVEEGDKWAELKPYNKGFKLNFTI
                     DFEHPLIPKNVGSYSIDFSAENFIQQLSRARTFTFMKDVEYLQSIGLALGGSLDNAIV
                     LDDYRILNEDGLRFKDELVRHKMLDSIGDLYMCGYNILGEFSAYKSGHGVNNKLLRAV
                     LENKNAWEFVTFEDKAEVPQGYQVQQEIFI"
     gene            49812..51494
                     /gene="recN"
                     /locus_tag="PXC99_000123"
     CDS             49812..51494
                     /gene="recN"
                     /locus_tag="PXC99_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HDL5416626.1"
                     /translation="MLTQLTINNFAIVRHLILELNEGMSVITGETGAGKSIAIDALGL
                     CLGYRSESGMIRNGSDKADISATFTMQPHSPAYLWLQEHELLDEDNPQECILRRMINI
                     DGRSKAFVNNRSLPVSQLRELGQYLIHLNGQHAPQLLLKNEYQLEIVDHYATLQPLLM
                     KMAKQYGNWKELNKQVKNFQKQCQENEARKQLLEYQVEELDEFAIKANEFEEMEEKYN
                     ILSSSEELTELSDEITRLLSDDEINANSLIYKALRNAENLAEVDSQYQGILDMLNEAL
                     IQIQEASSEVAQLASKIEQDPELLQELDNRIAQTISLARKHHIQPNELWQYHATLKAE
                     LQELLDFEDNEEQLIQNEKQAYQECITLAEEIYQKRLDATHKLSEQVTKQIKHLAMEN
                     GEFFIHIEHNLEKMSANGADYVEFNLRSNLGQQPQPLAKIASGGELSRISLAVQVLTA
                     NKLSTPTIIFDEVDVGISGSAATTVGKLLRKLGEKCQVLCVTHLPQVASYGNQQFNVQ
                     KYVENNQTETQMTLLTEAERIHALARLLGGSEITETVLANAKEMLNLAKNNE"
     gene            complement(51541..51616)
                     /locus_tag="PXC99_000124"
     tRNA            complement(51541..51616)
                     /locus_tag="PXC99_000124"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(51581..51583),aa:Ala,seq:ggc)
     gene            complement(51696..53135)
                     /gene="gltX"
                     /locus_tag="PXC99_000125"
     CDS             complement(51696..53135)
                     /gene="gltX"
                     /locus_tag="PXC99_000125"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HDL5416627.1"
                     /translation="MKIETLFPLDPNVKVRTRFAPSPTGYLHVGGARTALYSWLYAKH
                     NDGEFVLRIEDTDLERSTPEATAAILEGMEWLDLAWEHGPYFQTKRFDRYNQVIDQML
                     EAGTAYRCYCSKERLDEVRAEQEANKEKAKYDQHCLHNPQNDPSQPHVVRFKNPTEGS
                     VVFDDAVRGRIEIANSELDDLIIRRTDGSPTYNFCVVVDDWDMGITHVVRGEDHINNT
                     PRQINILKALGAPIPTYAHVSMINGDDGQKLSKRHGAVSVMQYRDDGYLPEALINYLV
                     RLGWGHGDQEIFSRDEMIELFDIHSVSKSASAFNTEKLQWLNQHYIRSLAPSYVAKHL
                     EWHMQTQGIDFTSGPKLEEIIPVLGERCKTLKELAESSRYFYQEFKAYDEKAAAKNFK
                     AEAVAPLAKLLEKLTACNDWTVENIHEAMNQTAAELEIGMGKVGMPFRLAVTGSGQSP
                     SMDITAKLVGKERTLARLQKAIEFIQANS"
     gene            53310..53385
                     /locus_tag="PXC99_000126"
     tRNA            53310..53385
                     /locus_tag="PXC99_000126"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:53343..53345,aa:Val,seq:tac)
     gene            53434..53509
                     /locus_tag="PXC99_000127"
     tRNA            53434..53509
                     /locus_tag="PXC99_000127"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:53467..53469,aa:Val,seq:tac)
     gene            53562..53637
                     /locus_tag="PXC99_000128"
     tRNA            53562..53637
                     /locus_tag="PXC99_000128"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:53595..53597,aa:Val,seq:tac)
     gene            53686..53761
                     /locus_tag="PXC99_000129"
     tRNA            53686..53761
                     /locus_tag="PXC99_000129"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:53719..53721,aa:Val,seq:tac)
     gene            complement(53915..55408)
                     /gene="mltF"
                     /locus_tag="PXC99_000130"
     CDS             complement(53915..55408)
                     /gene="mltF"
                     /locus_tag="PXC99_000130"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltF"
                     /protein_id="HDL5416628.1"
                     /translation="MKGLIARLFIAVALLLWAWDMIFPWQKIIHSEANHYTQIQQSKT
                     LKVGMINHPLSYFVGPEGKSGIEYDLATAFAQYLKVNLDIKTYDSSEKLFEALRNNDV
                     DIAAAGLLYHSELNDEFQIGPSYYSASWQLVYKKGSARPYRLSDLRENVIIPAGSAVI
                     PILNQLKVDNPELKWQISDKFTQEELLLKVAQGEISHTIAMSVDISAAQHINPNLAVG
                     FDLTDENPVLWYLANSSYSELQSVLLDFMSYSMETGLISRIEEKYFNHLAKFDYVDIQ
                     SYLNAIKTILPKYEPLFRAHKGELEWQMLAAIAYQESHWDPNATSPTGVRGIMMLTKD
                     TADRMKISDRTNPAQSIKAGSEYLHMLMRQMPETIPQADRIWYSLAAYNMGLGHLLDL
                     RRLTKQLGGDPDNWLDVKKNLPLLAEKRYYANLKYGYARGYEALQYVENIRRYYGSII
                     NYQRVEEQKMQEQENLPDGQIKQENSSYEKIEEKEIPTDKEITPASN"
BASE COUNT        16264 a        11420 c        11935 g        15836 t
ORIGIN      
        1 tagactcttt tttcatttga atgttcataa aagtataaaa atgatttgct taaaaaatga
       61 ataagtggtg taatggctca agctgttcgt gcgttaatta aagttgaatc ttgttagtta
      121 ttttcctcaa ggcaagtgat tgatagatac gtctgtaata tcccgtttag ctatctttta
      181 tcactttttg tatttatata aggaaaattt tatgtcagca attaccggca cagtaaaatg
      241 gttcaacgcc accaaaggtt ttggttttat cacccctgat caaggtggca aagatgtatt
      301 cgtacacttc tctgctatcg aagcaaacgg cggctaccgc acattagaag acggtgctaa
      361 agtacaattt gaaatccaag attcagagcg tggagcttca gccgtaaacg tgaaaacaat
      421 ctaatttcag caaattcaat gaatttcgat aaaaatgccg acaacttgtc ggcatttttg
      481 ctatcaatta atctgtactt caaacctttt cggcacaata aaaatggcag gtagggtaaa
      541 aattgccatc aaccaaaatg tcaggcttgg ggaatgttga tagaccattc cggcaataaa
      601 ggtaaatact gccataaaag cacagcttgc caagccaaaa tagagacctt gtaatttcgt
      661 cacacgctct gccgattgca tcgaaatata gcgaatcatc gcaatatgag ccgccccgaa
      721 ggtaatagaa tgtagcattt gcattacaat aatcagcacg atctctgtag tactacccat
      781 tattgcccaa cgaatcactg caaaaacggc agctaaaatc attaaatggc tgattttcca
      841 cgatttaaac aagcgtttag agaccaaaaa gaacaaaatt tccgccacca ccgccaagcc
      901 ccaaaacagg ctagtcattg cggttgaaat actggcattt gaccaatgaa tggtgctgta
      961 agtgtaataa gcggcgtgcg aggctgaaat taacgacacc gcgatcaaca tttttaaggt
     1021 ttccggctct ttcaataatt ggcgataagt tacgcttgaa gtattggctt tattaccttg
     1081 ttcttcaaac ccgactttgg gcgtagcaag ctgccctatt cctaaaaaaa ccaagaaacc
     1141 gatgataatc cacaccaccg aattttcacc aagcaagccg ataagatagc cggcagaaag
     1201 tgagcctacc acaaacgcca ttgagccgaa taaccttgct ctgccgtaat ccagcccgat
     1261 ctgatgttgc caaattgagg caatgctatc ggctatcggc attgcccccg aattgaacat
     1321 ttgaaacaac attaacaccg gaaaaagtag ccaaatgaaa tcccctgaaa acagcaacgc
     1381 cgccgcagcc gcaatattca gccaagttaa actgcgggcg gtgggaatga gttggctcac
     1441 ggtttttacc cgttgtgagg caagcatact gccggcaaag cggaacaaat agccaacggc
     1501 ggcaaataag ccgatcattt cagtcgaata gccgtgatgt ttaagccaca ctggcaaaaa
     1561 cggcaacaac acgccatagg cacaaaaaaa gccaaagtaa ttaaatgccg cccattggaa
     1621 cggggaaact ttcatcataa cgattgctcc atttctctgg ctcgatgaat tgccgcccac
     1681 attgcatcat caacggtttt agcaagatcg tgctgctcaa acacctcaag ggctttcgcc
     1741 gttgtgcctc cctttgaggt cacattttcc cgcaaggtcg aaagtggcgt agtcgggttc
     1801 gcttccacca atttcgccgc ccccaatgcg acagattgta caagcgttct tgcgtcctgc
     1861 tcggaaaagc ccatttgcac cgcactttgc tgcattgcct ccataaaacg gaagaaatac
     1921 gccgggcttg agccggttat cgcaataatg tggttgattt gctcctcggt ttccacccag
     1981 taacatttac caacggctga catcaactgt tcggcaaatt ggcaagcggt cggatttacc
     2041 gatttttttg caaataatcc ggtcattcct tcgctgatta aagacggggt gtttggcatc
     2101 gtgcgaatga tatttttcgc actcggcaac agcgtttcca agcgttgcac agaaatacct
     2161 gctgctactg aaatcaccca tttgttggaa aaatcaacat cggcaaactc ggcacacact
     2221 tgtgccatca tctgtggttt taccgccagc acgatcacgt cagcctgctc taccgcctca
     2281 cgatttgcaa aatttgtcgc aattccgacc gcttgtaact cctctcggcg agccaaatta
     2341 cttttattgc acgcaatgat ttgttcggca gaataaccgc tttttaataa gccttgaata
     2401 atcgcatacg ccatatttcc ggtgccgata aaggcaagtt ttttctcgtt cattcgcaaa
     2461 ttctctactg tgttgggttg aggtctgtta aaataacact attctacacc cgataaagga
     2521 tatgcaaaaa tggtttggtt caaaaatgtg atgatctata aattaaccgg cgagctggcg
     2581 ttggaaagca atagccttaa cgagttacag caagaaaccc gctttacccc ttgcagccag
     2641 cacgatatga gcaaattcgg ctgggctacg ccacttaccg gctcggattt actgcatttc
     2701 tcacaagcga accaattttt gctgatttca cacaaagaag ataaattatt acctgccaat
     2761 gtggtgaaag ccgaaaccga gcaacgcatt gcagaactgg aagaaaaaga ggctcgtaag
     2821 ctgaaaaaaa ccgaaaaaca agccgtgaaa gatcaggtcg tttctgcgtt attgcctcga
     2881 gcattcagca aacatcaatt caccgctctt tggttggatt tagataatca gttggtttat
     2941 gtggatgcag cctcgagcaa acgggcggaa gatacgctgg cgttactgcg aaaaacactt
     3001 ggctcgttgc cggttgtgcc gatttccttt accctaccgc cggcagaggt aatgacgaat
     3061 tggatcgcca aagggcatac gccaagttgg ttgaatttgt tggaagaggc agaactgaaa
     3121 tctttcgata ccgacagcat tattcgctgt aaacgccaag atttagagac ggaagaaatc
     3181 gcccggcact tgcaagcggg caaatttatc acaaaacttg cgattgaatg ggaagggcat
     3241 ttcaattgcg tgttaaatga agacgccacg ctttcacgcc tgaagtttgc cgatgaagtg
     3301 cgagagaaaa atgacgatat tctcaaagaa gatgtggctc aacgctttga tgccgatttc
     3361 ttattaatga ccgaagagct gaaacttttc accgaaaaaa tgattgccga atttggcgga
     3421 attaaatcca gaatttagaa aaaaatttaa ggaaagcaat gttagatcaa accattatcg
     3481 accaatatga cgccttgatt tttgatatgg acggcacatt aattgacacg atgccaagcc
     3541 acgccaaggc gtgggaaaag gtgggcgaag tgttaggcta cccaatcaat ccaaagccaa
     3601 tgtacgaact gagtggctca accacttttg tgattgcccg agaaataatg caacgctcca
     3661 atatccccga gcattatttt gagcaagtgg tacaactaaa acgggaattt gggattgaaa
     3721 tggtgttagc caatgccact ctgttgcctg cctttgagat tattaaagct aacgttggca
     3781 aaaaaccaat ggcaatcggc acaggctcac accgtgcaat ggtggaatta ttagaccaaa
     3841 aatttaactt acgtcaatat gtttcggtta ttgtagattc tgatgatgta agcaaccata
     3901 agccagcccc tgaaaccttt ttaaaatgtg cggaaaaact tggcattgcc ccacaccgct
     3961 gtttggtgtt tgaagatgcc gatttaggcg tgcaagccgc cctcaacggc aatatgaacg
     4021 tgtttgatgt acgtacgaat acgataactc actcaacccg ttaaaaatga taggtttata
     4081 tgaaaacaga atggattaaa catttaattc aacaattaac cacgctttcc aaagccatcg
     4141 aaaactactt taccagcggt tcatttgggg tgaaattcta cccttttcta atgcaccctt
     4201 gttttcgtaa aagctgtgcc tttttgattt ttattattgc tatggtttca agttttagcg
     4261 ggctatttta tttggtggcg gaacacatca cgattttatt tagcgaaaga tcgctcacca
     4321 cttacttcca ccatagcacc cttgaattga tgattccagt cggcacaatg atagatgaaa
     4381 aaatcagcga attatcacca ctttcggtgg taatgcgttc aatgtttgtg ctacaagcag
     4441 tcgttttttt ctttatttat gcaatcggca tcacccacat tgctcacaac aaattgcggg
     4501 tcatcggctt attgctttcg ctatgctttg cgattggctg ctcactagtt gccggtattc
     4561 agccaagcag tcgtggcgaa ttcggcattt acaatttagg ggcaagcatt acgtttttaa
     4621 tcggcaattt aacgctgatc atcgcaggct tcgatctcta ccacccttca atgcaatttt
     4681 ttaaacgctt tagcattggt gcgggcgtta tcggggcaat ctgtatttta atcacgattt
     4741 tcctaccaac cctgtttagc ccgttaattg aacgagcagg tatttatacc attatgctgt
     4801 gggaaatttt agccggtttt gccatcatta aacgcctgtt gaaattgccc tcattcagac
     4861 aacaaggata accaatgaaa cagattccct ttattcaacg ctatgctcaa ctgattgagc
     4921 taccgaccat ttccagcctt gttgccgaag aagatttatc gaaccgccgt ttgattgaat
     4981 tgctcgccac ttggctggca gatttcggct ttaaaaccga gattttagcg gtagaaggca
     5041 gccgtaataa atacaattta cttgcgacct atggcgaggg tgagggcggc ttattattgg
     5101 cagggcatac cgacaccgtg ccgtttgatg aaggaaaatg gcgcttcaat ccattccaat
     5161 taaccgaaaa agcaggcaaa ctctacggct taggcacggc agatatgaaa ggctttttcg
     5221 cctttgtggt ggaggttgtg agccaactcg acctaaccca aatcaaaaag ccgattcgca
     5281 ttcttgccac cgctgatgaa gaaaccacaa tgctgggggc aagaaccttt gctcagcaca
     5341 gccacattcg ccccgattgt gcgattattg gcgagccgac ctcgctcaaa ccgattcgag
     5401 cccacaaagg gcatattggc gaatcggttc gcattaccgg cagaagcgga cactccagcg
     5461 accccgccaa aggcattaat gcgattgaat taatgcacca atctatcggt tatttaatga
     5521 aaatgcgtga tgaactgcga gagaaatacc acaatccgct gttccaagtc acccacccga
     5581 caatgaactt cggcaatatt cacggcggcg atgccattaa ccgcatttgt gcctgttgcg
     5641 aattgcaatt tgatatgcga ccactaccga atatggcggt gcaagatttg tatgcaatgg
     5701 taaacgagca tttaaaaccg atgctggaac aatatggcga tttaattgaa atccgccatt
     5761 tacacgatgg aattccgggc tacgaatgcg aacactcggc acaaatcgtg caagtggttg
     5821 aaaagctact gggcgaaaaa tgcgatgccg tcaattactg caccgaagcc ccattcattc
     5881 aacaactctg cccaacgctg gtactaggcc ccggctccat tgaacaagcc caccagcccg
     5941 atgagttttt ggaaatgaaa tatatcgaac cgacaaaaga gttattgact aaattgattt
     6001 atcatttttg tggataaatc aacagaaaca agcgctcatt ttcgccatac tttttgcaaa
     6061 agaatcggca aaaatgaccg cttgatattt agtattgagt gacctataaa cttccatact
     6121 tcatcattga tttaaggaga ttctgttaga taggtattaa tctctagcta ggtcttggat
     6181 acaaacggcg agaatgaatt atagtaataa tatatacttt ttctaggtgt atctcataga
     6241 caatacgata attgcggcag aatgtttcta atgtgccatc ttctctacgt cgccctattg
     6301 taggcataaa tgcaatgaga tcgagtttat tttgtaattg ttcccaaagt gaaactgcgc
     6361 tcaaccaatg ccctgtataa tcttctaccg actgtaaaat ctcaatgaca ttagaccttg
     6421 cggtaagtga cagctcccaa gatttaggca taattaacct caaacaaatt ttcattttct
     6481 cgtaattgct gacgtttctg catatccgca aataaatgat ttaattcgtt attgatttgt
     6541 tctttggtaa aggtttctcc tcgagctatt gcttcttgac cagctttaat ttgctctgca
     6601 agaaactcat catatccttg ttctttgaat agcatattct gctcctttga tttgtgtctt
     6661 gattccacta tgttcaagac atagtttaag tttaaatcta cgctcaaagc aatgaagagt
     6721 caagggaatc cttatgttga tagggtgtgc atatttttcg agtcaaatga attaaaaatc
     6781 atcattacga tcacccactc atagatttta tcttcctatc taaggtcatc ttcttatatc
     6841 aaacaagcgg tctaaatttg caaaaaaatg acaaatttag accgcttgtg agttacaaaa
     6901 atataaacta attgagctta tcaattactg cgcataacta aatactttca ccactttggt
     6961 tactccacct acattgcgag cggcttcggc ggcggcatca gcttggtttt ggctgacttt
     7021 gcccattaaa aacacttcgc cgttttcggt gacgactttc acttcggtgg cttttacctc
     7081 gctatttact aacagtttgg atttcacttg ggtggtaatc cagctgtctt gtgtaatctg
     7141 tccaaagccg attttttcgc cttggcggat ttcgttgtaa atttccgtca cgccctccgc
     7201 cccagcagcg aggtttttcg cattttccac tacgtccata cttggtgctt gcccgattaa
     7261 taacactttg ccgttgtaag ccaccacgtt aatgcgggct tcttgtttga tttgctcgtc
     7321 tttattaatg ttgtaagcga ctttttcttc taaaatttca tcatcaactt gcgtgccggt
     7381 ggtgcgtggg tctgtcgcca ctttagttgc aaccgccgca gaagtcacca ccgccgtggt
     7441 gatacaacct tgtaaagaga taaaacctaa tactaatagg ctgcccttta atagtttatt
     7501 tgctaatttg ttcataatct ctccttacga aaatagtaaa tggtcgataa gttcacataa
     7561 taaattcaca taaaaatgat ggctttcaat caccctcagt tgattggttg aaggggctga
     7621 aatttcaata tcactttcat ctaataagcc gagtgtgtgg tcgttattac tgcctgttaa
     7681 agcaataata tctaaatcta aatgttgatt tttcgccgta tgaatagctt gcaatataca
     7741 ttcttcatta cccacaggcg aaaaaacaat gaagagatca ccctcttttg caaccgcctg
     7801 caactgtttt ttataaacag cctctaactc gttatcttgt gccacaactc ctgccaatac
     7861 accgcttaat tgcagttgta cggcagcaaa actcggtctt gccagttcat aacggtgaag
     7921 taagtggctg accaataatt cggcattacc gtaagagcga ccgtgtccgc agacgataac
     7981 tttatcgcca cgcaacaaac aggcaacaat gcggtttgcc gcttcactta atttagccgg
     8041 caatagctca gaggcggaaa tttgggtttg aatactttcg gtaaatctat cttggatttt
     8101 atttaacatt ctttctaacc taaaaagttg ggaatccaca caggcgtttg gtttccttca
     8161 aaagcaacca catcaaaacg gcaatttgca gtttctaaac tttggttttg tttaagcaac
     8221 cacatattag cggcattttg ccatttttgt tgcttgcggt aatcaatact ctcaacggct
     8281 gaaccgaagc ggttgctttt acgctggcga acttctacaa acacaacggt ttgtccgtct
     8341 tgcataatcg gatccagttc gccaccttta aatgcttggt tagcggcaac aaaacgaagc
     8401 ccttgctgtt ctaaaaacac tcgggctttt tgttcataaa acgagccttg ttcccgttta
     8461 ttaataagct tgttgaatag ctccattgcg atattgcatc caagataaac tacgttcaat
     8521 attacaatgt tgtccggctt ttaactcacc ggttaaacct gaaattttgt agcccggaat
     8581 atggcggaat tcattgaatt tggttgccaa tgaccacgca tcagccccca ttgcgtataa
     8641 acgcatcatt gagaaatcgc tattggctaa attctcggct tttttatatt cactagaact
     8701 ttgatcagct aacagtggca cttcactaaa ttttacccct tccattgaag tgtaaaaatc
     8761 aatgccgtta tttggcgaat tactgcgaga tgaggtatag atcgctaaac gatcttttaa
     8821 ggttgagcta tcaatacctt gtttaatttc taatacttgc tcggcattcc ccaaaatata
     8881 taaagctgct ttgctcacac ctgcattttg aatagcggca acggcatcaa gcggttggtt
     8941 gtagtaacgc acatcagcat cgctattggt aagctgacgc cagcgtttgg caaaggcttc
     9001 tgccgagcgg ttgccgtagt catcttgagg ggccgcaacg atagcgacac tattaccgtc
     9061 ttgataaatt ttttccgccc ctgattgtgc ctcagattca ggagataaac cgtagtaaca
     9121 cacctgagca atattacgca cattttcagt ggcattcagt gccaaaatat tcacgttttg
     9181 gatttctggg ctaagtagca tttcatcaac acgagatttg agcaatggcc cgacaatcac
     9241 atttgcccct tgctgttttg cctgtgaaat taaggaatta acatcagatg aatcggtatc
     9301 aaaagtttgc actgcggttg agtcatcagc cttagcatca ttaaaaccac gcttgataat
     9361 atcacccaaa atttttgcat caccacttag aggcaatagc aatgcgacac tgtttaactg
     9421 ggtttgttgg aaattactca ccccttgtaa ttccgttggc attacggcaa ccgcactatg
     9481 gctcgggtat tgggctttcc aattattaat tgcttgtggc atttgtgccg gtgtcgtcac
     9541 attttgatta tagatattaa ttaatgccaa ccaaccagca agctccatct cacccgcttc
     9601 aggcacagtt ttttccagca ttcctcgatt tgcatcacgc aaggtttgcc aaataatatc
     9661 gttattttct tggcgttcac ggttcatttt atagaaattg ttaagttgcg atcttgcacg
     9721 cacaatgcca atcacatctt tctgattggc agcaatacgg gcttgggttt gaatataacg
     9781 caaacgctgt gccgaactta atagcggatc ttgaatggct tttaattggc ttgttgcttg
     9841 ctcgtttttc ccttgtaagg cggcaagctg ggcggaaacc aaggcatact ctaacttttg
     9901 cacctcgttc atctctgcgg tcagaatttc actaaaggta ttttgagcct catattcctt
     9961 attttcatca attaatttgc gtacagctaa aagttgatac gaaattttat cttccgcttc
    10021 tttggtttga tctgctttat taatatagaa ttccgagctt gaataggctt catttttaat
    10081 ggattcggtg acaggattta ccgatgtaca ggcagaaatg aataatgcaa tcgccgttgg
    10141 caccaatgcc tttttcattg tatggtttaa aatagttgcc attgtcagat cctcaataga
    10201 atataatgtg ctaaatttaa tgtgaaatct tacttatcaa acgagctaaa agcaaatgaa
    10261 aaacagacaa aattcatctg gaatcaaccc aaattacgga attttatata ttgttgccac
    10321 gcctatcggc aatttaggcg atattaccca acgggcgtta gacacccttt catctgtcga
    10381 tttagtcgcc gccgaagaca ctcgccacag cggtttattg ctgagccact acggcattaa
    10441 aaaaccgttt ttcgccttgc acgaccataa tgaacagcag aaagcggtcg ttttagtcga
    10501 aaaattagca aaaggggaaa acattgcgtt aatttccgat gccggaacgc cactgattag
    10561 cgacccgggc tttcatcttg tccgtcattg ccgccaagcc ggggtaaaag ttgtgccgat
    10621 ccccggggct tgtgccgctg ttactgcctt atgtgcttca ggcatagctt cagaccgttt
    10681 ttgttttgaa gggttcttac cggcaaaaac aaaatcccgt tgcgataaac ttaccgagct
    10741 tgaaaacgag cctcgcacac tgatttttta tgaatccacc caccgtattt tagacactct
    10801 tgccgatatg cagactgttt ttggcgaaga tcgctatgtg gtaatggcgc gtgaaatcac
    10861 gaaaacgtgg gaaaccattt atggagatca actgggtaac ttaattgaat ggctaaatga
    10921 ggatagcaac cgaattaaag gcgaaattgt tctggtggtt gaaggtaaac cgcaaagtag
    10981 tgaggaagcc ttttccagcc aagcgatcaa attactgaca ttactctgcc aagaacttcc
    11041 gcttaaaaaa gccgctgcca ttgtggcaga aaccttcggc tataagaaaa atgccctgta
    11101 tcaatatgga ttggagcatt ttgagtaaca gacaagcggt cagattttgt gagttttttg
    11161 cagattggca ctcccctctc tctgaaaaat gtttctgaac gaaacatttc ccggtctcaa
    11221 tactcgctac gctcgctcct tcggagccgt tggcaaagcc aacgttcaaa tgtaaacatt
    11281 tgtcccataa ggggagagag ctaaattatt cgcttgtcga cccctctcca ctcgtgggag
    11341 agggacagat tcttcttcgt tcagaagaaa aatcagggag agggggaagt ttctcgcact
    11401 aaattccgat aagcatatgc cataatcgca aacatcaaca gcaagtaaag cggtaataat
    11461 tgaatgctga tagcattagc aataaagccg aaaatcggtg gcaataacag gacgccgata
    11521 taggcacttg ccatttgcac gccgatcacc gattgagact tgtcctcgcc gaaaaacgca
    11581 ggggtcgaat gaattaagca cgggaaaatc ggggcacaac ctagcccgat aataattaaa
    11641 cttgccagcg taacatattt gcctaacggc aagcacagta tcgcaatgcc gactaagatc
    11701 aaggctgaac caagtttaat catttgtctg ttgctaaatt taagcgtcaa gaagccactt
    11761 acgcctctgc caacggtaat gccgataaag aaaatactgc cgaacgcagc cgcttgttct
    11821 aagccgacat ctttaaccat tacaaaatag ctactcgccc acagtccggc ggtttgttct
    11881 acgccacaat agccaaaaaa agctaaaatg ccatatttca cgcccggaat ttttagcgtt
    11941 tcttttaagc tcatcggttt tgccgaatgg ttgatttcag cggtaatctg cttgcgtaat
    12001 ttccaaaaag gcagtgagca aaacagcatt agcgttagcc cgatttgtaa cattgaaatg
    12061 gtgaaatagc ctgcctccca gcctcgccct tgcaataagg cgtagcctaa aatgtgcggc
    12121 ccgatagaag ctccaacgcc ccacatacaa tgcagccagc tcatatggcg gcttgcgtag
    12181 tgaactgcta catagttatt caacgccgca tcaaccgctc cagcccctaa gccgtaagga
    12241 attgcccata aacataagat ccagaaagca tcactgattg aaaagcccca caatgctaaa
    12301 gccgttaagg caacgctgat gaccattact ttgcctgtgc cgagatggta ggtcagtttg
    12361 tccgacatta agctagaggt aatagtgcca atcgacataa tcatcgagac cacaccggca
    12421 taggaaagcg gaacagcaag ctgttggtgc attgacggcc acgccgagcc taaaattgca
    12481 tcaggcaacc caaggctgat aaaagagaga taaataatag cgagtaggag gttagtcata
    12541 gcttacaatc ggtcacaaaa agcatcgctt tttgaacgtt ggctctgcca acgggagcga
    12601 agctgtgaac aatccttaca aggattgtga ataatttttg ataaattttt tgtaaaaaaa
    12661 tggcttaagg agaccttaag ccaaatttta ttatttcact tctgccaaat aggccttatt
    12721 agcacggtca aaggtgtcta atacggcttt gcttggcatt ggcgtgataa gtgataccac
    12781 aatgatcatt agggtagcag caataaagcc cgggatcatc gagtaaattt ccggtaaggc
    12841 gagcttaagt gtaatatcgc cccaaaaatg cacgattaac gcaccggtca gcattccggc
    12901 aatcgcccca aaaccgttca tacgtttcca gaatagtgaa agcaatacca caggcccaaa
    12961 tgccgagccg aaacctgccc acgcattacg cactaagcca aatactttgc tgtccgggtc
    13021 ttgggcaata taaatagcta atgctgccac cgcaagcacc atcaagcggc ttaaccaaac
    13081 cagttcttta tcggaggctt gagggcgtaa aatgcctttg tataaatctt cggtaatcgc
    13141 acttgaacaa atcagtaatt gagcggaaag ggtactcatt accgcagcaa gaatggcaga
    13201 taataaaatg ccggctaccc aagggttaaa taacaattta gctaattcaa tgaaaatttg
    13261 ttccggattt ttgctgatat tgccgacttg ctccgggttg ccaaagaaat atgccatacc
    13321 aaaataacca atgcctattg cccccagtaa gcagataatc atccaagtca tactgatacg
    13381 gcgtgcattt tcaagagact tcacactttc tgccgccata aaacgcacca caatatgcgg
    13441 ttgtccgaaa taacccagcc cccacgccat taagctgata atgcctaata cgctggtgcc
    13501 ggtgaaaatg tcgttgtagt ctttttgtgc catctcgcct gcacggtcga ttaaggcttg
    13561 catttcatca aaaccaccta agttatacat cacaaaaaac ggggtgagaa tcagggcaaa
    13621 aaccattaat gaagcttgaa tagtatccgt ccaacttact gctaagaaac caccaataaa
    13681 ggtgtaaaga atggtagcaa cagccccata ccaaattgct tggtggtaag gtaagccaaa
    13741 taagttttca aataccctcg caccggccac aacgcctgat gcacagtaaa ttgcaaaaaa
    13801 gagtaaaaaa atgaccgctg ataaaatctt aattaaacgg gttttatcgc caaaacggtt
    13861 atgaaaatat tcgggtaagg ttaaggcatc gccactgtgt tctgtatgcg agcgtaatct
    13921 gcctgcgact aatttccagt ttagataagc accgatagtt aaaccgattg cgatccagcc
    13981 ttcgatcaaa ccgcctgcat aaacggctcc gggtaatccc atcagcaacc agccggacat
    14041 atctgatgca ccggcagaaa gtgcggtcac aaagctacct aaacggcgac cgcctaaaat
    14101 atagtctgaa aggttattgg taacacgata ggcaataaag ccgatggcaa tcattcctag
    14161 aatatagaca acaaacataa ttgttgttgg atcaagacca aacattatta atgaatcctc
    14221 aagatttctt attgtataaa gattaaagtg agtaaagggt aaaagattac ctgaaataat
    14281 caaaatggca acacaaaatt accgtccgcc cagctcagct gaaatttttt ctgctgtttc
    14341 ttgaatagcc ggtagtagat tttcccgccc cagctgattt aaacgagcag ttgaaagcga
    14401 aacagaaatc gcataatgga ctttttgttg gtgatcaaaa atcgggcaag caatacaaga
    14461 aacccctaat tcattttctt cgttatccat tgcaaaacct tgacggcgaa tggtttccag
    14521 ctcggtttgc attccgtcaa tcgtggtgat ggtattgacc gtcagttttt gaatgatgtc
    14581 cgatttagtc tgccaatatt gtggaatgta atctgccgaa ccataagcaa gaaacagttt
    14641 tcccattccc gagcaataga gttgcatttg ttgcccgata taggctcggg tacgcatcat
    14701 tccggtggta gcttctaatt tattgattaa aatagcgtga tcgttttccc gcatcgcaaa
    14761 atttaccgtc tcgcctaagg ttaaatttag ggcttctaaa tgtggggcgg caatatgcaa
    14821 aatgttaatc gaacttaagg ctcgctgccc gattgccaaa catttggtgg ttaaacgata
    14881 actgcccgca gtcggtgcag ggcggacgta gccctcttgt tgtaagcctt gtagcagacg
    14941 gtgaaccgtg cttttgttca gccccgaaag ctcggctaaa tgggcaagcg gacagccgtt
    15001 tgggaatttc gctaacaatt ccaatagtgt taagccacga attaaacttt gatttccact
    15061 cgattccttt tctttctttg cattcatttg gctgctccca aaataatatg atctaacggc
    15121 atatcccaac tctcaatcgg taattgttcg acttgctgac attcgtgtgc caaaccgaca
    15181 ctaatcagat gaggtgcttg agcaagggtt ctatcataaa agccacctcc cattcccagc
    15241 cgatttccgg ctttatcaca agcaacaagt ggggtaaaaa tcatctctaa ttcttgcaac
    15301 ggaaggatat ttctaacatc taatatcggc tcttgaatcc ccaagcggtt aaattttaga
    15361 atagttttgc aattgtaatt tacaaacaat aattgaccgc ttgtaaaagg gtgcaacagc
    15421 ggcagataca gctttttgcc ctgttgaagt aattgttcca ttaaaggaat aggagaaatt
    15481 tcaccgttaa aaggcaaata aaaggcaata tgtgaggctt ggtaagattc aatcaatgaa
    15541 agagcttgag gaataatgga ttcggctgct tgagtttgct gaccggcagt taaactttgc
    15601 cgtttaagcc gcattgattg ccgtaattgg ctacgaagat cggttaaaga tgattgattc
    15661 atataaagac ccgagatgcc gctaccagta atggtccttg aaccagtcgg ttcaagggag
    15721 tcaaacttaa ctgcttttag gcttcttact cctaattaaa ttagggtaag cttgctcacc
    15781 agcgttagat gtccaactca aagtttcaaa ttatcggctc agggacgtaa ctcgtaacgc
    15841 acaccccagg caagacttat agtaacggaa tttgatgatt tttcctagta tttaatccca
    15901 caaaatgcaa attctcaatc tttttggctc tattcctaat caattcgatt aaaaattacc
    15961 taattggatt gaaatttgcc aagcgaatta tctaactgct caatacaagc caccaacaca
    16021 tttttatttt ctgcattttg gcgttgggct tgctccagtt cataatttaa attcagtgcc
    16081 acaatcgcta acactttttc aagctgaata atgccggact gctctttcaa taccaccaca
    16141 cgctcttcca aacgctgtgc tgaagccagt aaatgctctt gctgttcaac agggcattgc
    16201 aagcgtaaaa cctgcccaaa aatctgtagt tcgatattat ttgccgacat aaatacgaaa
    16261 tcctcactta atcgcaaaat ttttgctata ttatgccatt ctttagcaaa atcacaaata
    16321 atcccattat ggctatcaca gattcccaac aatttaaaca actggtatca caattacaaa
    16381 ttgatgatac accggcagag tttcacggtt ttttatgcgg tttaattgcc ggcggtattc
    16441 aagatgagtc ttggaaaacc ctcacctacc aatttaccaa tgacggacac gcattttcca
    16501 tcgagccgtt aaacacttta accgattttt atcagcaatt aagtgaaagc ttttcagaag
    16561 ccaacacgct gtttagcctt tggttgccac aaaacgaaga agatggtttt gccttagctg
    16621 atggtatctc cgaatggaca aacagtttct tacttggact tggcgttgct caacctaaat
    16681 tacaacaaga aaccgatgag gttggcgagg caatcgatga tttagatgaa atcgccaaac
    16741 taggctacag tgacgatgat aataacgagg aactactgga ggctggcgaa gaagtgttgg
    16801 aatatctgcg agttttagcc ttattcttgc acagccattt tgctttaggc gtgccgaaaa
    16861 ccgaagaaaa gccaccatta cactaatgaa taaatacaag cggttcaatt tcatctctat
    16921 tttgcaaata tattatgcgg ggcgaaaaat atttcgcccc taccaaaatc aaaggaaaaa
    16981 ccaatgtcag aattaaaaaa cgatcgctat ttaaaagcgt tattgcgtga acctgtggat
    17041 atgaccccgg tctggatgat gcgtcaagcc gggcgttatt tgccggaata taaagccacc
    17101 cgagcagaag ccggcgattt tatgtcactc tgccgtaacg ctgatttagc gtgtgaagtc
    17161 accttacaac cgctacgccg ttatgaactc gatgcagcta tcctattttc cgatatttta
    17221 actgtgcctg atgcaatggg attaggttta agttttggtg caggtgaagg ccctaaattt
    17281 gcccgcccgg tggcaagcct caatgatgtc aatcagctac cgattcctga tccggaagac
    17341 gagttgcaat atgtaatgaa tgcggtgcgt accattcgcc gagaattgaa aggcgaagtg
    17401 ccactaattg gtttttctgg cagcccttgg acactcgcca cctatatggt ggaaggtggt
    17461 tcaagcaaag catttaccaa aatcaaaaaa atgctttacg ctgagcctca cattctacac
    17521 aaattgctgg acaagttagc tgacagtgtc atcttatact taaatgccca aatcaaagcc
    17581 ggtgctcaag cggtgatggt attcgacact tggggcggtg tattggctca cgaggattac
    17641 aaagccttct cattacacta tatgcacaaa attgtggacg gcttaattcg agaaaatgaa
    17701 ggacgtaaag tgcctgttac cctattcacc aaaggcggag gcttatggtt agaagcgatt
    17761 gcagaaacgg gctgcgatgc cgttgggcta gattggacag tcgatattgc cgatgctcgc
    17821 cgccgtattg gcgacaaagt tgcgttgcaa ggcaatatgg atccaagcgt gctgtatgca
    17881 agccctgaac gaatcgaaca agaagtaaaa aacattcttg ccggcttcgg caacggcagc
    17941 ggacacgtct ttaatcttgg acacggcatt catttagatg tgccggtgga aagcccgaaa
    18001 gtgtttgttg atgcgattca caactactcg aagcagtatc ataaataatg gataaaatgc
    18061 cctctctcct tgtgggagag ggacagattt ttctttgttc agaagaaaaa tcagggagag
    18121 gggcaagcgg tcatttttat acagaatttt gcaaaatcgt tcccttctct ctgaaaaata
    18181 aagaaggaaa tacaatgaga aacccgattc ataaacgcat ggaacgtttc gagccttggc
    18241 aaaacaccac atttatggcg tgcctatgcg aaagaatgta ccccaactat cagctttttt
    18301 gtgaagtaac cgaacagcct gaaaaagcta aggtattcca aaatatttta aatttagtct
    18361 gggaatattt aaccataaaa ggggcaaaaa ttaatttcga taaccaactg gaaaaattag
    18421 aagaaatcat tcctgatgtg aacgaatatg cgttttttgg tgtcttacct gcacaggaag
    18481 cttgcgaagc cctttctgaa cttcttcaca gtattatcgc tggttcaacc cttgaacaag
    18541 caatccgcat cagccaaatt tcattaggca cagttgccag ctatttggaa atgcaacaag
    18601 ataaagaact gaacgagcaa gagctaaaga attctgaaga aattcaagaa gaactggacg
    18661 tacagtggca aatataccgc ttgctaaacg aatgtgaaaa acgtgatctt gatctcattt
    18721 ttgaacttaa agatgaaatc agaagcagcg ggattagtaa tatcgggtta aatattaacc
    18781 aatagcattg atatttgcaa aatcttgctt aataatactt tgagaaatct taactttgaa
    18841 ttaagctatc gcaaggtttc aataacttct cagacgtttt acgtcattta ttaaaaacac
    18901 atatcttaga ggataaaact atgaacaaaa ctgagttaat cgatgctatc gccgctggtg
    18961 caaacttaac caagaaagat gctaaagcag cattagaagc aactcttgat gcaatctctg
    19021 caagcttaaa agcaggcgac gctgttcaat taatcggctt cggtactttt aaagtaaatg
    19081 agcgtaaagc acgtactggt cgtaacccaa aaactggtga agagatcaaa attgcagcag
    19141 ctaaagtacc tgcattcgtt tcaggtaaag cattaaaaga tttagtaaaa taattcttta
    19201 aagatataaa aataaagcct ggattataat ccaggcttta tttttagcgt gtttcgatag
    19261 ctacagagaa actaaaaagc actatttgct ttcaatcgct tttttcattt cttcaacttt
    19321 tgtttctgtc tcaactttca cttctgctgc cttctcagct actgcctttt tagcttcttc
    19381 tgctttatct gctgttgctt gagtcgcatc acttgctgct gcttttagtt cttccacttt
    19441 agcttcagtt gtggctttta actcagcagc tttctctgct actgcctttt ttgcctcttc
    19501 tgttttatct gttgttgctt gagctgcatc atttgctgct gcttttagtt cttccacttt
    19561 agcttcagtt gtggttttta actcagtggc tttctctgcc actgcctttt ttgcctcttc
    19621 tgttttatct gctgttgctt gagctgcatc atttgctgcc gctttcaact cttcaacctt
    19681 cgcttcagta gccgatttaa cttctgcagc tttttcagct acagcttctt ttacttcaac
    19741 cgctttgtct gtagttgatt gcgcggcttc ttttgcctga tcacaagcag caagtgccat
    19801 agttgtacct aacactaata atgataaaaa tgattttttc ataccgagtt ccttaaataa
    19861 actaaaaata acgcactttg taataaagtg cgtttactta ggcagaaaaa ttgatagaaa
    19921 gttcatactt tgataaaaaa atgcctatta gttataacta ataggcattt aaaccaatta
    19981 attgtactta accattggtt gaacgaggcg ctgactgcac ttggctcact gcgctggtat
    20041 atccgccaaa ccctttgcca tagaaatagt atttagagtt ttgccattgg ctaatttcga
    20101 ctacttcaag cttgtcactt ggtgcagaag caatggtcat agcggcttgg gtatgctcaa
    20161 cacgagagaa tgtacctaat ctgccgttaa atcgataatc gctttcgtaa gttgattttg
    20221 gcacttcaat cgggttagta acctcttcca caatcgctgg tgcaaccgtt gcttgcgatt
    20281 ggaatttact gactcgctca tttttctctt taactaaatc acgttcagaa tgctgagcaa
    20341 caacactacc aaatggagca atatgctctt ttacctctac tggttttacg tcttcagaag
    20401 caactttttc ttctttcggt ttggaaagct gttcttgctt ctccttaacc aaatcacggt
    20461 tagttgcttg tgctacaaag ccacctagcg gactaactgt atgaagcttc ttctcttctg
    20521 attttttctc tgtctcaaca agctgatttt cttgctgttc aagcatttga tcaacagata
    20581 agaatgatgc tttttcctct actttgacag tagaggtaac ctgaacccaa actttaccgc
    20641 tcgcaagctc aggcgaagca acagctgaag ttagaggcat aggagaaata acctgattgc
    20701 gttgattttc acgacgacgc tgattgccca cacgcaaatg gcgaggtaaa cggcgttggc
    20761 ggttattttc acgtccttcg ttcgttgttt ctacctcagg agctgtttca acaggtactt
    20821 cttgggttgc aagcggttga atttgttgat ttttttgcac attttcaact tgttttgcca
    20881 ccgtttcctc aacagcaggt gttagatttt ccacttctac ttcttgtgtt tcgatacgca
    20941 cttttttacg tagatcacgg cgttggcgac gttcagtttg aacctcacgg gagttgctac
    21001 gactctcttg ctcggttaca ccggaaactt cttccactac cgctcggcgt gcttttttct
    21061 cgctacgcat cggtttttct tccgctggag tagtttgagc ttgcggagtt ttacgctctt
    21121 gattttccgc tttagcatta cggttcgggc gttcacggcg ttggcgacgc tcacgctgat
    21181 tgcgtgcttt cggcttcggt ttttcttcca ctttttcttc actaaaccag cctttaatgg
    21241 tcgcaattaa gcggcttaac agcgatggtt ttggtggttc ggttggtgtt ggcgaaggtt
    21301 ggagattcag ctccgagctt tgtaacactg actctaccgt aatcaccggc tcgttacggg
    21361 taaccagcac atcttcttga tggtgatgat gtgggtgttc ttcttcatga cgagcttcgt
    21421 aatgcttggt taaatcgtag cttaacgttg gagtaatttc attttcacgc aggcgatata
    21481 cgctgaaatg cggcgtttcc atactttcag acggtactac aacaatttgt acatcgtggc
    21541 gtttttcaat gctggaaatc gctttacgtt tttcgttgag taagtagctg gcgatttgca
    21601 ccggcacaat ggtgtgaacc tgtgcagtgt tttctttgat tgcctcttct tctaataaac
    21661 gtaagattga cagtgcgatt gattcattat cacgtacttt accagttccc tgacagcgag
    21721 ggcagatatg cgatgaagcc tcacttaatg atgggcttaa acgctgacgg ctcatttcta
    21781 acaaaccgaa acgggaaata cgggcaaatt ggattctcgc acggtcttgg cgtgtcgcct
    21841 cacgaatacg gttttctact tcacgttggt ggcgaaccgg tgtcatatcg ataaagtcga
    21901 tcacaatcaa accacctaag tcacgcaaac gtaactgacg ggcaatttca tctgccgctt
    21961 ctaagttggt gttaagagcg gtttcttcaa tatcgccgcc acgggttgaa cgtgaggagt
    22021 taatatcaat tgctgttaag gcttctgtta catcaataac gatagagcca ccggaaggta
    22081 aacgcacttc acgttggaat gccgattcga tttgcgattc aatttgatag tggctgaata
    22141 gtggtacttc gccttcgtat aatttcacac ggttgatgaa atccgggcga acaaggcgaa
    22201 tgtggttttt ggctttctcg aacacttttt tgttgtcgat taagatttcg ccaatatcac
    22261 ggcgtagata gtcacgaatt gcacgcacaa tcacgtcact ttcttggtga attaagaacg
    22321 gagctgggcg agattccgcc gcttttttaa tcgcttccca gtggtgtaac aagactttta
    22381 agtcccattg taactcttcc ggcgatttgc cgacaccggc ggtacgaacg attaagccca
    22441 cgtcttccgg tacatctaag cagtctaaag cctctttgag ttctaaacgc tcatcacctt
    22501 caatacggcg ggaaatacca ccggcacgag ggttgttcgg cattaagact aagtaactgc
    22561 ccgcaagcga aataaaggtg gttaaggctg ctcctttgtt accacgctct tctttgctga
    22621 cttgaacaat cacttcttgc ccttcttgaa taatatcttt gatattcggg cgaccgttaa
    22681 acacatagtc tgacgggaag tattctcggg aaatttcttt taaaggtagg aagccgtggc
    22741 gttctgcacc gtaatctacg aatgcagctt caaggcttgg ttcgacacgg gtaattttac
    22801 ccttgtagat attggatttt ttctgttcgt gacccgggct ttcaatgtcc aagtcaaata
    22861 agcgttgccc atcaacgagg gcaacacgca actcttcttt ttgagttgca ttgattaaca
    22921 ttcttttcat tgtgttttct cattattttg tttttgtctt acacggtcat tttgacccat
    22981 taataaggga atggatttaa tgtctatctc acgactgtct tcattcccga tagtgcattg
    23041 atggttgtct tacgtttact ttgtcttgtc ttaaagaaac tgcaaaatca atcacttaag
    23101 gcttgtttat ctctattaca agcggttatt tttgctttat tttttgcaat tttctattgc
    23161 tttttcaagc caaaaataac gagtcattat cgcattttaa ccctgaaaaa ggcaaggtaa
    23221 ttgttgtatg gtagctgtta tttgttgtgg agatgaatat aatgaaaatg aatggggtga
    23281 taaggaaaaa taatgagatt tagtgtgagt gctggagata agcgtgaaat ccaagcggtt
    23341 aaatttgcaa aaaaagagct aaatttaacc gcttgtaaag cgaatattat gcttttgccg
    23401 tcattttttt cactgcttct tcagtggtcc agaggtcatt tgcgataata cggtagttgg
    23461 ttaatgctgc aaggtagccg tcaccttcag gaatacgagg ccctgcggtt gcatctttca
    23521 ccactgttac ttcaaaacct tgttcgatta attcacgcaa gtgtgaatca atacataagt
    23581 tggcagccat accggctaaa attacttggt cgattttacg tttgcgtaat tgcaacacta
    23641 agtcattggt ttccggtcca aagattttgt gtggagaggt aatcactgtt ttgccatcaa
    23701 aaatgtatgg tttgtactca ggcataaagt ctgcacctga attttcaaag ccttccatgg
    23761 tgtattgacc ttttctcgca aacattccgc tgtcgtgcat aaagtgttca cccggtgaac
    23821 caaattccca tttgtgatca gtcgggtaat agtagtgtgg cgaaacaaag gttggcatat
    23881 cgactgcttt tgctgcttta aataagcttt caatgttagc tacagtgttg ttttctttaa
    23941 ttgagtcacc taacacgccc cacatcacgc ctttcgggcc taggaagtca atttgtggat
    24001 caactaccac taatgccaca cgttttggat caatggtcat tccatggcgt tttaaaccgt
    24061 attgttccgg ctcggcataa ggtgattttt ctgcactggc ttgttttgca tttgctgttg
    24121 atgcaatacc taatgcacct aatacactgg ctgccattgc aatacgagag ccgtggttaa
    24181 gggcttgacg gcgttcttgg ttgatttctt caaattgttc ctgtgacatc attttatcct
    24241 cattaataga tatacaaatt gtaatgataa cttgcgttac cgaacgggtt gctattatag
    24301 tgatcgcatt tctcctgttt taaccgttcg tctcaattct ttacccaagg agcttaatgt
    24361 ggatagtttg actcatcttt ttacccaatt tcagtttcgc acggatttat ttcatctagg
    24421 tcagttatgc caaatcggga gttttaatga agagaataaa ggctatttac atttcgttcg
    24481 tcagggacgt tttattttaa atcaggctgc cgaacgcccg attacgattg aacgcccagc
    24541 gattattttt tcaccaacca atattttgca tagtttgcac ccgttagatg atagtgggtt
    24601 agatatattt tgtattaatt ttgattttgg caaagggatt cgcaacccat taactcatac
    24661 cttgcacaat attgtgatct tagagttggc acagtatccg gaattggggg tattagccga
    24721 tcaaattttt agtgaagtga atcagaaagg gtgtggttat caggcaatga ttcatcattt
    24781 atgtgcctat tttaccttga aagttgcccg ccaatgtttg gaaaaagggt atattcaaac
    24841 aggtttgtta aaaggcttgg cagataagca actggggaaa gtgctgttag ctattcacaa
    24901 tgcaccagag cgagattgga atgtagagga gttggcaaat gtggcattaa tgtctcgctc
    24961 acgctttgct gcttatttta aacaaacgat gggggtttca ccgatggatt atctcactaa
    25021 ctggcgacta gcggttgccc agcatttatt acaaaaaggg ataccagtag cattggtggc
    25081 agagcaagtc ggttatagcc ataatgctgc tctcagccgt gtctttatgc gggaattagg
    25141 gctttcgcct accgagtggc tggctcaaaa taaagagtcg taacctgatg agaaacaaat
    25201 agccgaatgg taaaaatgtc aaaaaattta accgcttgtt atgttgcaca agcggttaaa
    25261 tgttgcctta aatgccaaga gaatcccaaa tctcatcaat gcgtttcacc acattgtcat
    25321 ctttttcgat gggtgttccc cattctcggg tggtttcacc cgcccattta ttggtggcat
    25381 caatccccat ttttgagcct aaccctgcaa ttggcgaggc aaaatcgaga taatctatcg
    25441 gcgtgtgttc aatcagtgtc gtatctcgag ccgggtcaca acgggtggtg atcgcccaaa
    25501 ttacatcttt ccaatctcga gcgttcacat cgtcatcgca cacaatcaca aacttggtgt
    25561 acataaattg acgcaggaac gaccaaactc ccatcatcac ccgtttagcg tgtccggcat
    25621 attgtttttt catcgtcact accgctaaac ggtaagaaca gccttcaggt ggcaagtaga
    25681 aatcgacaat ttccggaaac tgtttttgca aaatcggaat aaagacttca ttcaatgctt
    25741 cacctaatac tgccggttca tcaggtggtc tgccagtgta ggtagaatga taaatcgcat
    25801 cttttcgcat cgtaatatgg gtaacggtaa ataccggaaa atactcttgc tcgttgtagt
    25861 agccggtgtg gtcgccataa gggccttcca atgcggtttc ttccagatcg atatagccct
    25921 ccagcacaat ttcgctactt gccggcactt ctaactcatt ggaaatagat ttgaccactt
    25981 cggttttatg ccctcgcaac agccctgcga acgcatattc cgaaagcgta tccggcacag
    26041 gggtgactgc cgctaaaata gtggctggat ctgcaccaat cgcaaccgac accagaaacg
    26101 gtttacccgg gttttcggct ttccactctt ggaagtctaa cgcaccgcca cggtgggaaa
    26161 gccaacgcat aatcagtttg tttttgccga taagttgctg acgataaatg cctaaattct
    26221 ggcgtttttt gtaaggccct tgcgtaatcg tcagccccca agtgaccagt ggagcgacat
    26281 cgcccggcca acagtgcata atcggtaatt tgtagagatc aacctcatca cccgaaatca
    26341 ccacttgctg acaatcggct ttgctcagta ccttaggcgg catatttaaa atttgcttcc
    26401 attgtggcag ttgcccgatc aaatctttaa accctttcgg tggttcaggc tcttttaaaa
    26461 aggcaagtaa cttgcccagc tcacgcagag ctttggtatc ttcttgcccc attcccagag
    26521 ctacccgttt gggcgtgccg aataaattac acaacaccga catttgatag cctttcgggt
    26581 tttcaaacag taatgccggc ccgcctttgc gtaaggtgcg gtcggcgatt tctgtcattt
    26641 ctaaataagg atcgatttct tgctgaatac ggactaattc accctgagac tcaaggaaat
    26701 cgagaaattc acggagattt ttatacttca tagcggtcat atttttcgat ttttttgcaa
    26761 gtatatagaa aaacgtaaat gaaaaatacc cataaaaaat ttatagaaat tttgttttat
    26821 tttgttagaa tagctcggtt caaattaaat gccataaggg gaattttatg tttaaaagaa
    26881 cattaatcgg tctagccgtg ttaggtgcaa gtgttgctca agcggatgta ttaaccagta
    26941 ttaagccttt aggctttatt gccagtgcca ttaccgaagg ggtaactgaa actaaagtat
    27001 tattaccggt aactgcctct ccacacgatt acagcttaaa accttcagat gtgactcaat
    27061 tacaatctgc tcaattagtg gtttgggtgg gtgacggctt ggaaggcttt ttagaaaaaa
    27121 gtattgaaaa actgccgaga gaaaaagtat taacccttga agatgttgat gcgattgatg
    27181 atattgtcga taaagcaagc aaaaaagaag ataaagacga tgatcacgat cataaacatg
    27241 aacataagca cgaacacaag cacgagcata aacacgaagg gcataatcac gaaggacata
    27301 accacgatca tcacggacat agccacgatg aagattggca tatttggctc tcaagcgagg
    27361 caagtgagct ggcagcagag caaattgcgg cacgtttaag cgaacaaatg cctgaacaca
    27421 aagcgaaaat tgcggaaaat cttgcaaaat ttaaagcaaa tctaaccgct aaaaaagccg
    27481 aaattgcgaa acaattagag ccggtaaaag ccaaaggtta ctacacattc cacgatgctt
    27541 acggctattt tgaaagagaa tatggtttaa attcattggg ttcatttacc attaacccaa
    27601 ctgttgcccc gggtgcaaaa acacttacag caatcaagaa aaacattgcg aaaaacaaag
    27661 cacaatgttt atttgccgag ccgcaattta cgccgaaagt aattgaaacc ttagcaaaag
    27721 aaactaaagt aaatgttggc caattagacc cactcggtgc aaaagttcag ttaagtgcga
    27781 ctgcttaccc tgaattttta caagttttgg ctgacgaatt tagccaatgt ttaacaaaat
    27841 aagttaaaaa tcccccattt aaatataaat gggggatttt gcgattacat cacttaagct
    27901 ttttttaaga attctgattt caacataatt ttaccgcaat cgacattatg gtcaccttga
    27961 gctaaacgga ttcctttgaa ttttgtacct tttttcagta cttcagacga gccttttaat
    28021 tttaaatctt tgattaataa tacatcgtcc ccgtcagata ataaattgcc attactgtct
    28081 tttacaatta gcacatcatc atcttgatcc gtttcttcgc ccgtccattc atacgcacaa
    28141 tccgggcaaa caaattgaat tgagtcgtgg taagtatttt cgcttttaca ttcagggcag
    28201 gttgggtaaa tcattttaat tcctcaaatt aataaagaac cagattatat accgaaatcc
    28261 agcaaaacgc taagcggtca tattttgccg attttttacc aatcgagcta aaagtcagtt
    28321 agaatagcct taattacaca aaaaggagga tactatgata gtcgatccga attatcagca
    28381 agaattagaa aaatacgaaa atccggtacc aagccgagag tttattttaa atacaattcg
    28441 tgaacataac gccccaatga gccgtgatga attattgtcg gcttttcata ttgacgatga
    28501 agaacgaatg gaaggcattc gccgccgtct gcgtgcaatg gaaaatgacg gtgaattggt
    28561 gttcaccaaa ggcaaacgct atgcgttgcc ggaaaaaatg gatttaatca aaggtacagt
    28621 tatcggccat cgtgacggtt acggtttttt gcaagtggaa ggacacgaaa aaggggcgac
    28681 taaaagcgaa gattggttta ttcccaacgc ccaaatggta aaggtaatgc acggtgactt
    28741 tgtgctggca caaccaaacg gcacagaccg cagaggtcgg aaagaagtcc gcattgtgcg
    28801 agtgttggag gcccgtaaga aacagattgt cgggcgtttt ttccttgaaa gcggtatcgg
    28861 ttttgttgtg cctgatgaca gccgcgttaa ccaagatatt ctcattccgg atgaacaccg
    28921 tatgggggcg agaatggggc aagttgtggt ggtggaatta caggaaagaa aagcgagttt
    28981 tagccgcccg gtgggaatca ttactgaaat tctaggcgat aatttagcgc cgggaatgga
    29041 aattgaaatt gccctacgca atcacgatat tccgcacatt tggccggaag gggtagaaaa
    29101 acaaatccgc caatttagta gcgaagaagt gccggaagaa gccaagcaag ggcgggtgga
    29161 tttgcgagat ctgccactga ttaccattga cggcgaagat gcccgagatt tcgatgatgc
    29221 tgtatttgcc aaaaaagagg gcaacggctg gcggttatgg gtggcgattg ccgatgtaag
    29281 ttattatgtt cgcccaaaaa ccgcattaga tttggaagcc ctaaatcgtg gtaactcggt
    29341 ctatttcccg aatcgggttg tgccaatgtt gccggaagtg ctttccaatg gcttgtgttc
    29401 actcaatcca caggttgaca ggctctgctt ggtggcggaa atgtcggttt ccagcaaagg
    29461 ggaattacaa gattatcaat tctacgaagc ggtaatgaac tctcacgccc gtttaactta
    29521 cactaaagtg tggaaaatgt tggaaggtga tgaagccttg cgtgaacgct atgctccatt
    29581 agtgccgcat attgaagaac tctatgcaat gttccaaacc ttaatgaaag ctcgccataa
    29641 acgaggggcg attgaatttg aaaccattga aaatcaattt attttcaatc cgcaagggcg
    29701 aattgagcga attgagccgt taatccgcaa cgatgctcat aaattgattg aagaatgtat
    29761 gattttagcc aatattgctg ccgctcgttt tgtggaaaaa gcgaacgaac cggcgttata
    29821 tcggattcac gataagccga gtgaagaaaa attgctcagt tttaaatcct ttgtgcgtga
    29881 gtgtggctta acctgggacg taggcttaga tccaacccca aaagattacg gtgtactact
    29941 ggagcaaatt gccgaacgtg ccgataaaga gttgattcaa acgatgttgc tccgctcgct
    30001 gaaacaagca gtgtatgcgg cggataatat cgggcatttc ggcttggcat taaccgaata
    30061 tgctcatttt acctcgccga ttcgccgtta cccggattta ctgttacacc gtgcaattaa
    30121 atatctgatc gaaaaaggca aaggcaacac tcgctactat accgatggcg gtggttatca
    30181 ctacaagtta gatgatatgg acgaattcgg cgataaatgt tctgccaccg aacgccgagc
    30241 tgatgaggca acccgagaag tggcagattg gctgaaatgc gaatttatgc aagatcatct
    30301 tggcgaagag tttgatggcg tgatttcgag tgttaccggc tttggcttat ttgtaaaact
    30361 caatgagctt ttaattgacg gattggttca tatttcaacg ctggataatg attattacca
    30421 ctatgatgcg gaccgacaac gtttaatcgg tggcagtggg atcatctatc gtttaggcga
    30481 tgcagttaga gtaaaagtaa tcaatgtgaa tttagacgag aaaaaaattg attttgagtt
    30541 actcaccggt aataagaaaa ccggcaaaac cgccaagaaa aaagcaaaag cgacagaggt
    30601 tcctgttttc aaagagccta aaacggtaaa aaaagccaaa aaagtcgctg agaaaaaacc
    30661 ggcaaaatct gcaaaaaaac ggacaaaaac gaccgctagt aaatcaagga aaaaatagca
    30721 aatggattac aaaaaacaaa ttttattcag ccttttattt gctttagtaa ttgcaataat
    30781 aagctatttt ttgtttacct atatcccgtt tgattgtagc gatctgagca aactcaacga
    30841 ttcacaacgt ttagagtgcc gaactgccga atttctgggc gtttattact ggctgccgca
    30901 cactaccacg ctgtttttcg gctcggtgtt attatattgg gcggtttatg gcatgatttc
    30961 attagtgcaa gcagtgctca aacgctaaca agcagttttg tttttgcaaa aagttgcaaa
    31021 tctcatctga ataatccttc caagatcaaa ggtctatcaa aaaagataga cctttattgt
    31081 gtaaataaac taaaactcct tgatagatgt atcacatatc tataaaattc cagcaattaa
    31141 gtgggaaaaa gtggtaaatt gtggaacttt tccttaaatt taacctcatt taaaaaggta
    31201 aatcagtaaa atgtttcgtg gtgcaagttc aatcagcatt gatagcaaag ggcggatcgc
    31261 tattccgacc cgttatcgtg ccgagctatt ggaaaaacat cacgggatct tagtttgcac
    31321 tgtggatatc cgccagcctt gtttgttgct ttacccactt cacgaatggg aaatggttga
    31381 acagaaattg ttggcactat ctaattttga ccctgttcaa cgccgtattc agcgagtaat
    31441 gcaaggcttt gctaccgaat gtgaaatgga ttcggcaggg cgaatactgc ttagccctac
    31501 acttcgccaa cacgcacaat tagagcaaca aattatgctg gttggacaat taaacaaatt
    31561 tgaaatttgg caagataaac aatggcaagc acaaattgcc gaagatcttg cttttggcag
    31621 ttcggcagaa attttagact gcgaagcatt gaaaaacctg tctctctagt aattggaaat
    31681 tgagatgagc gagaacccaa aacatattac agtattattg cacgaagcgg ttgacggctt
    31741 ggcaattaag cctaacggta tctatattga cggtactttc gggcgtggcg ggcattctcg
    31801 cttgatttta tccaaactgg gcgaaaatgg gcgattaatc gcaactgatc gtgacccacg
    31861 agcgatagcc gaagctcaaa cgattagtga ccctcgtttt caaattgaac atacggcatt
    31921 ttctgccatt cccgaactgt gtgaacgaat ggggttggtg ggcaaaattg acggtatttt
    31981 attggattta ggtgtgtctt ccccgcagct tgacgaagcc gaacgaggct ttagttttat
    32041 gcgtgacggg ccgcttgata tgcgaatgga taccaccaaa ggcttatcgg cagccgagtg
    32101 gcttgcccaa gtttcggcag aagatttagc ttgggtattg aaagaatttg gcgaagagcg
    32161 ttttgccaaa cggattgcac aagcggtcgt ttcttacaat aaatctgcaa atgaaaaaat
    32221 cagccgcact ttgcagcttg cgcaaattat tgcggatgcg gtgccgttta aagataagca
    32281 caaacaccct gcaacccgtt cgttccaagc aattcgcatt tttatcaatg gtgaattaga
    32341 cgagctggaa aaagctttaa attccgcatt aacggtgtta gcccctgaag ggcgtttgtc
    32401 gattatcagc tttcattctc tagaagaccg aatggtgaaa cagtttgtgc gtaagcatag
    32461 taaaggaatg gacgtacccc gtggtttacc gattttagaa gcagagctaa ccaaaaatat
    32521 tccgctgaaa accattggca aagcgattat gccgagcgaa gccgaaattg aagcaaatgc
    32581 ccgctcacgc agtgcggtat tgcggattgc cgaaaaacgc taacagtaaa tagggaagaa
    32641 tatgtcgaac gaacgttatc cgttacatca aatcatcatt gatgatatct ttagccataa
    32701 caaagtggct cttttattgt tgattggtgt agtgatttca gcagtggcta cgatttggat
    32761 aacccaccag actcgtttat cggtgagcga acaagggcaa ctgattcaag caaaccaaaa
    32821 gttggaaagc caatatacta atctgcaatt agaagaaaac agcagaagca gtcgggcaag
    32881 agttgatgcc gccgctaaat cgttcggatt acagccgatt aaaaaagagc aagaaattat
    32941 tttagttgaa taaaaaatgg ttaaatcagt taaattaaaa cgtaagcaag aagcccctgt
    33001 cgcaaaagca gagcctcaac aagcagaagg taaaaaaaca ccgagttttt tacctactcg
    33061 ctttagagtg gttgtgtttt ttatgctatt aatggttggt ggcttactag cacaaaccgc
    33121 ctatattcag ctttttgact ctgaaagatt aattaaagag gctaataacc gctcacttcg
    33181 tactaaagaa ctccaattta cccgtggacg tattttagat cgtaacgggc gttttctctc
    33241 tattagtgtg ccaatgtact cattaacact tgacccgaga gaatactttg atactaagct
    33301 gcgtcgttct aacgaaagct ggcgtgcctt agcgattgaa atggaaacat caaaaggtaa
    33361 aattgaggca aacgttaata aatttattga aaagaaaaat ttttcaaaag aaaaagtaga
    33421 ttttgatcca cgttctattt taaatactaa aagtgaaggt tattggactc agcttgccca
    33481 agttacaggt ttggattaca acagtttaat agaaaaagta cggaataacc ctagctcggt
    33541 ttttttacgt ttagataacg aaaatttagt aagagaacgc cagaaattcc aagcgttaag
    33601 caaagaaatc ggccgttcct ataatgacat aatggacgag ctttatagca aaaaccgcca
    33661 gcgattcctt tacttatccc gtcatcaatc tgaagcgatc agcgaatatg caaaagaact
    33721 agatattgat gcattagtga ttaaagtcga atcacgccgt ttttacccgc tggcagaaga
    33781 atcttcacag ttgatcggtt ttactgataa agatgatatg cacggttcgg aagggctgga
    33841 gcgtagtttt gattccttac ttatcggcaa aaacggtaaa caaattatcc gaaaagatgc
    33901 caaaggcaat attgtggaaa atatccgttc ggagaaacag tacgatccgc aagatgttat
    33961 gttaagcatt gatgaagaat tgcagtctat ggtgtacggt gaaatcaaaa aagcggtaca
    34021 ggaaaataat gcggaatcag gcactgcggt tttggttgat gtgcaaaccg gcgaaatttt
    34081 ggcaatggca aatgcccctt cattcaaccc aaacaaacgg gatagtttta aacctgaatt
    34141 aatgcgtaac cgtgctatta ccgacacttt tgaaccgggt tcaacggtga aaccttttac
    34201 cgtattaacc gcattacaaa atggggtaac ttatcgtgat gaagttattg gcactcgccc
    34261 atttgtcgtc aatggacata caattaaaga cgttgctcca agggacagcc ttacgcttac
    34321 cggcatcttg caaaaatcca gtaacatcgg ggtcagtaaa ttagccctca gaatgccggc
    34381 aaatgcgtta gtggatactt acacgaaagt cggtttcggt aaagacaccg gtttaggctt
    34441 gggtgaacaa cgaggtacga acggtgatcg caaacgttgg gcggatattg aacgtgctac
    34501 cctttcctat ggatacggtt taaatgtgac cccattacaa cttgcccgtg cttatgcgac
    34561 tttaggaagt ttcgggctgt atcgcccact ttcgattacc aaggtcgatc cgccggtgat
    34621 tggcgaacgg gtgctaccgg aaaaaaccac ccgagatgtc gtgcatatga tggaaagcgt
    34681 tgcggctaaa ggcgaaggcg gacaccgtgc agcggtggac ggctaccgtg tagccatcaa
    34741 aaccggtaca gcacgcaaat tagaaaaagg taaatatgtt gaaaaatata ttgcttatac
    34801 cgcagggctt gccccggcaa gcgatcctcg ctttgcatta gtggtattaa tcaacgaacc
    34861 taaagcaggc aactattatg gtggctttgt ttctgcacca ctgttctcac gcattatggg
    34921 ttacacctta aaacaacgta atattaagcc ggataactta acggaaaata cccaaagtgc
    34981 cgtgcgtgaa attaaattag aacgccctat caattaaggt tagctatgaa acgtttactc
    35041 ccttttctga cagaacttga tgcttgggtg gaagaactca ccgagctaaa acaaatgaca
    35101 cttgatagtc gccaagttca agccggtgat ctctttgttg ctttaaaagg acatcaagtc
    35161 gatggcagaa aatttattcc gaatgcgata gaacaaggag cagcaattat tttggctgag
    35221 gctgatgaag atcaaccgga aattgagctt gatccgaaat ttgcaaaatt taacctagat
    35281 cgcaccgctt gttgcaaggt tgtctctgtt ccacgtctgc caaaattgct ctctgaaatt
    35341 gcaggagctc tttaccataa cccgtcacac aagctgactt tagccggcat taccggcacg
    35401 aacggtaaaa cgactactgc tcaattatta gcacaatggc ataatttatt gggtgggaaa
    35461 tcggcagtaa tgggtactat cggcaacggt ttgtacggac aagtgcaaga agcggtaaat
    35521 accaccggct ctgccattga aattcagcat aatcttgcga actttgttga acttggagcg
    35581 gatttttgtg cgatggaagt cagctctcac ggtttggctc aatttagagc cgaagccttg
    35641 gattttgatt tagcgatctt tacgaattta agccgagatc accttgatta ccacaacacg
    35701 atggaagagt atgcccaagc caaattccgt ctcttcaacg aattaagcac caaagctcaa
    35761 gtaattaacg ccgatgatga aatcgggcgt gaatggctga cacaattacc aaatgcagtt
    35821 gcggtaagca ccgatccgaa gtttgcaggc aaccaccaat ttgtcaaagc cactgcggta
    35881 aaatttaccc tacaaggggc aagtattgcg tttgaatcaa gttggggcaa tggcgagtta
    35941 catagccgtt taatcggggc tttcaatgta aataatctgc ttaccgcctt tgccggactt
    36001 ttagctcttg gctttgatat tcaagaactg gttaaaaccg ccccgaattt agttggcgta
    36061 gcaggtcgaa tggaatgcat taccgctcca aataagccaa tggtaattgt ggactatgct
    36121 cacacccctg atgctcttga aaaagcccta caagcggctc gtttacattg cgaaggcgaa
    36181 ctttggtgca ttttcggctg tggtggagac cgtgacgccg gcaaacgccc attaatggcg
    36241 acgattgccg agaaattaac cgataaagtg attgctacag acgacaaccc tcgcaccgaa
    36301 gataatcaaa agattatggc agatattgtg aaaggtttta gtaaacccca acaaattatc
    36361 cacaatcgtg aagaggcaat taaaaccgcc attgagcaag ctaaagccac agatgtgatt
    36421 ctaatcgcag gcaaaggtca cgaagattat cagattattg gcacagagaa gttacatttt
    36481 tcggatcagg aaacggcaag gaaatatctg ttttaatgtc actttctttg cacaagcaaa
    36541 gaaaagtgac agtgacaaat acaaaatgct cgtaattaat tttataaaga aaaagataaa
    36601 tcaatgataa aactaaccac ccaacaaatc gctgaaatcc taaatgccaa attgatcggc
    36661 aatggcgaaa ctgtggtaga aaccaccagc accgacaccc gacaagcggt tgaaaacggc
    36721 ttattttttg cattaaaggg cgagaacttt gatgctcatc actatcttca aaatgcagtc
    36781 gcacaaggtt gtgtagcggt tgtggttgag cgtgagtgtg aaattgatgt accacaactt
    36841 gtggtggcag atacccgttt ggcattgggg gaattggcga aatggttaaa agctaagctg
    36901 aacccgaaaa cggtagcgat gacaggttct tccggcaaaa caaccgtcaa agagatgacg
    36961 gcaaaaattc tgcaaaaaat gaccgcttgc gaacaggaag tgctttatac ttttggtaac
    37021 ttaaacaatg acttaggtgt accgatgacc ttgcttcgct taaccgaaca gcataaatat
    37081 gcggtcattg agctgggggc aaatcatatc ggtgaaatcg cttataccac cgctatcgct
    37141 cagcctgatg cctgcttggt gaataatgtg gctgcggcgc atttagaggg gtttggttca
    37201 ttagcaggcg tggcacaagc caagggcgaa atttatcgtg gcttgaaaga aaatggcaaa
    37261 gcgattgtca atttagcttt ttattatccg caatggcaaa aagagattgg ctcacgggaa
    37321 atgcaatctt tctcttatat cgggtcagat tcggattctt acgcagatta ctgggcggaa
    37381 gatgtagaac tgcatttaag cggttcacgc tttacgctac ataccccaca gggcgaaatt
    37441 gctattgatc tgccttattt gggcaaacat aacgtgagca atgccttagc ggcaacttcg
    37501 ctggcgatgt ctgttggggc aacgctagaa gcagttaagg cagggcttga gcagcgttca
    37561 atggtaaaag ggcgtttgta tccggtgcaa attaacgacc actgtttgtt tattgatgac
    37621 acttacaacg ccaatgtgga ttcaatgaaa tcggcgattt ctgttttgga aaattatccg
    37681 gcttatcgta tttttgcagt gggtgatatg gcggaattgg gtgaagaaag tagcaaatgc
    37741 caccaagaag tagcggattt tgccaaaaat gcagcattag atttaatcgt gagctttgga
    37801 aaagaaagtg cggtaatcag ccaacaggca gaacatcatt ttaccgataa acagcaaatg
    37861 gttgatttcc tactgccgat tattttgcaa aaaatcgaac aaaaacaacc gcttgtatta
    37921 ttggcaaaag gctctcgtag ccagaaaatg gaaaccgtga tttccgaatt gtgtaaaccg
    37981 tttaacctaa atttctaatt atttttaagg actaagcaat gttagtttgg cttgcagaac
    38041 tattggttca atataacaca gcgtttaacg ttgtctctta tattactttc cgtgccatta
    38101 tggcgttatt aactgcaatg ggaatcgggc tttggatcgg gccgaaagta attcgccgtt
    38161 tgcagatctt aaaatttggt caggaagtgc gtaatgacgg accggaaagc catttcaaaa
    38221 aacgtggtac gccaacaatg ggcggagtga tgattctcgc agcgattggg gtgagtacat
    38281 tgctttgggc agatctgcgt aattcctatg tttggttcac gctgtttgtg ctatttggct
    38341 acggtgcagt gggctttgtt gatgattatc gtaagatctc tcgtaaaaat accgatggtt
    38401 tgattgcccg ttggaaatat ttttggttat ctgctatcgc attagtggcg gtgtttggta
    38461 tgtatgcggt gggtaaagat accgctgcaa cacaattagt cgtgccgttt tttaaagatg
    38521 tgatgccgca actcggttta ttttatattg tgttatccta tttcgtgatt gtcggcacca
    38581 gtaatgcggt aaacctaacg gacggcttag acgggcttgc gattgtgcca actattatgg
    38641 tcgcatctgc ctttgcgtta attgcgtggg caaccggtaa ctttaatttt gcacaatatt
    38701 tacatattcc ttttattcca aatgccggtg aattggttat tttatgtact gcgattgtgg
    38761 gagcaggttt agggttctta tggtataaca cctaccctgc acaggtgttt atgggcgatg
    38821 ttggctcact ttcgctcggc ggtgcattag gcgtgattgc agtattagtt cgccaagaat
    38881 tattattggt ggtaatgggc ggtgtatttg tggttgaagc cctctcggtg attttacaag
    38941 taggttcata caaattacgc caaaaacgta ttttccgaat ggctccaatt caccaccatt
    39001 ttgaactcaa aggctggtct gaaccacggg ttatcgtgcg tttctggatt atcacgctaa
    39061 tgctggtttt agtcggctta gtaacattga aattacgtta attgattgaa taaggtgcat
    39121 tgagataatg taccttatgt tatttttaaa ttacagaata aattatgcaa aaacaatacg
    39181 aaaacaaaac cgttactatt atcggcttag gtacaacagg gttatcttgt gtggatttct
    39241 ttaagaaaaa aaatgccaat atccaagtga ttgacacccg agcaaaccca gccggagcgg
    39301 ataaattgga cgtaactatt ccgttgcata ccggtgggtt aaacagtgaa tggttgctga
    39361 aatctgatct tattgtaatt agcccaggtt tagccgttgc cacacctgaa attcagcaag
    39421 cgattcaagc tggtgttgaa atagtcggtg atgttgaact gttttgtcgg gaagcgaaag
    39481 ctccgattat tgcgatcacc ggttcaaacg gcaaaagtac cgtaacgact ttaactaccg
    39541 aaatggcgaa gcaagcgggg attaaagtgg gaatgggtgg caacatcggt gtgccggtat
    39601 taagtttgct ggagggcgat tatgaccttt ttgtgctgga gctatccagc ttccagcttg
    39661 agacaactta ttcactgaaa gcaaaagctg ccactgtttt aaatattagc gaagatcata
    39721 tggatcgcta cgattcgatt gccgactatc gccaagcgaa attgcggatt tacgataatg
    39781 cggaaaatat catcgtaaac ggtgaagatg cccaaactta cccgatacaa gcggtcaaaa
    39841 aagtgattcg ttttgcagaa caaaatgcgg aatatagcct acgcaatcag atgctttatt
    39901 caggcgatga tgcaattatc caaactaaac agatgctgat tagcggccgt cataatgaga
    39961 tgaatgcgtt agcggcgatg gcattagcag aagcggcgaa tgttcctcgt gaaggcattg
    40021 tgaaagcttt gcaaatttat ggtggtttgc cacaccgttt ccaagcggtg gcaaccaatg
    40081 atggcgtgcg ttgggtcaat gattccaaag cgaccaatgt gggtagcacg gtagcggcat
    40141 taaacggctt gaatattgcc ggtacacttt atttactttt aggtggtgac ggcaaggctg
    40201 cggatttttc cgaactcaaa ccattaatta ataagccaaa tattgtctgc tattgtttcg
    40261 ggcaagatgg agcggcattg gcagaattaa gcgaacaaag tgtgttggtt gaaacgatgc
    40321 agcaagcaat tgaagcaatc cgcccacaac tgaaaaaagg cgatatggta ctgctttctc
    40381 cggcttgtgc cagtttagat cagtttaaaa actttgagca acgtggcgag gtatttatgg
    40441 cattagcaca aggacagcac gcataatgtt agaaagaatt aagtcggaat gggataaatg
    40501 ggtcagatta accccttcta attcacttta tgacagaact ctaatttggc tatttttagg
    40561 cctgctaatt atcggttttg tgatggtaac atctgcttca ctcccagtta gcacaaggtt
    40621 gaataacgat ccattttatt ttgcgattcg agacgggctg tatattattg cttcaattat
    40681 cttttgttat gtttttgtac aaatcccaat tgaaaaatgg gaaaagcata acttggcact
    40741 gttttttatt tcaatcggtt ttttaatcgc cgtactcatt ttcggccgct caattaatgg
    40801 tgcagtgcgt tggattccgt tgggtattct caactttcag ccggcagaat tagccaaatt
    40861 agcggtcatt tgctattttg ccagtttcta tgtacgtaaa tatgatgaaa ttcgtaaaga
    40921 aaaagccagt ttctggcgac cggcagtgat tttattctta ttcggcttct tgctgatttt
    40981 gcagccggat ttaggtagta cctttgtatt atttgttctc actttctcaa tgcttttcat
    41041 tgtgggggca aaaattatgc aatttatgtt tttaggcgtg gtgggaacgg tgttatttgc
    41101 ggtgttgatt ttaacctcgg aataccgttt aaaacgtgtt acctccttta tggatccgtt
    41161 tgctgatgct tatggcgacg gtttccagct ctcgaactca caaatggcat ttggacaagg
    41221 tgaattttgg ggacaaggtt taggtaattc ggtacaaaag ctagaatatt tgccagaggc
    41281 acatactgac tttgtaatgg cggttattgg tgaagaattt ggtttctttg gtattgcttg
    41341 catcgtactt ttacttattc tattaacggt gagagcctta aaaatcagta aagaatcttt
    41401 ggtgctggaa gagcgtttta aaggctatat ggcatttggg attgcgattt gggttttcct
    41461 acaaggcttc gtaaacttag gggtggcatc aggtttgctg ccaacgaagg gcttaacctt
    41521 cccattagtg agttatggtg gttcgagttt ggtaattatg tcgattgcga ttgcagtttt
    41581 gctacgaatt gaccacgaaa accgtgccga gcgaatcggg cacgcaaaaa ttaaaaccat
    41641 ctagccgagc ggtctgcaac gttacaattt gcaaaatttt acaaaaatga gaccgcttgt
    41701 attagctgga aagcataaaa attcagtaaa atagcacgtt ttagaataaa aaagagttga
    41761 aaatggcgaa gaaattatta gtaatggcag gtggaacagg ggggcacgtt ttccctgcaa
    41821 ttgccgtagc tcgagagcta caaaaacaag gctggcaaat ccgctggctg gggacgaaag
    41881 accgaatgga agccactctt gtgccgaaac acggtattga gattgatttt attgaaatct
    41941 caggcttgcg gggtaaaggc gttgcagcat tgttgaaagc accgtttgct atttttaaag
    42001 cggtgatgca agcccgcaaa atcattaaaa attatcagcc tgatgcggtg ttgggaatgg
    42061 gcggttatgt gtccggtccg ggcggtattg cggctaaatt atgtggcgtg ccggtgattt
    42121 tacacgagca aaacgcagtt gccggcctaa ccaatgtgtg gctatccaaa attgcccgca
    42181 aggtgttaca ggctttccct actgctttta aagaggccga agtagtaggt aatcctgtac
    42241 gtgaagattt atctgctctt ccgctgccga atgaacgttt cgccaaacga ggctacccga
    42301 ttaacatttt agtaatgggt ggcagccaag gggcaagagt gatcaaccaa accgtgccgg
    42361 aagtggcaaa agtgttgggt aataatgtgt ttatcagcca ccaagtcggt aaaggtaatt
    42421 tagccggtat cgaagaagtc tatcaacaaa ccggcaatgg gattgcttcc gagtttattg
    42481 atgatatgaa agccgcgtat gagtgggcag atttggtgat ttgtcgttcc ggtgcgttaa
    42541 cggtgtgtga aattgccgcc gtaggtctgc ccgctgtgtt tgtgccgttc caacataaag
    42601 acaggcaaca atttttaaac gctaactatt tggcggcaga tggagcagca gtgattatcg
    42661 aacagagcga tttcactcca aaggcattac agcaagcctt agaaccctta attgccaatc
    42721 gccaactctt attggatatg tcaatgcgag ccagagcaaa atccacccca atggcagcaa
    42781 aacgtgtagc ggaagtgatt attcaagaag cgaattaact tactacaagc ggtcgttttt
    42841 ggtaaaaatt ttgcaaaatg taaccgcttg cgaatagatt aaaaggacaa taaatgaaaa
    42901 atttccaaga taaagtcaaa aaattagtgc ctgaaatgcg tcgtgtcagc caaattcatt
    42961 ttatcgggat tggcggagcc ggtatgagcg gcattgcgga agtgttatta aacgagggat
    43021 accaaatttc aggttcggat attgcagaca gagcggttac acaacgtcta tccgcagccg
    43081 gagcgaaagt ctttatcgga caccaagcag aaaatattgc tggggcgagt gtggtggtgg
    43141 tttctactgc gattgatgaa accaaccctg aaattattgc cgctcgagaa gctcgaattc
    43201 cggtgattcg ccgagcagaa atgcttgccg aaattatgcg ttttcgccac ggcattgcga
    43261 ttgcaggcac acacggtaaa accactacaa ccgcaatgat ttcaatgatc tacaccgaag
    43321 caaaattaga tccgactttc gtgaatggcg gtttggtaaa atctaccggc aaaaatgctc
    43381 atttgggggc gagccgttat ttaattgccg aagccgatga gagtgatgct tctttcttgc
    43441 acttgcagcc aatggtgtcg gtagtaacca acattgagcc tgaccatatg gacacctatg
    43501 gtggcgattt tgagaaaatg aaagagactt acgtacgatt tttgcgtaac ttacctttct
    43561 acggcttagc ggtaatgtgt gccgatgatg aaacggtaat ggaaattgct cctcgtgtcg
    43621 gcagacaagt gattacctat ggctttagcg aaaatgcgga ttaccgaatt gaagattacc
    43681 agcaaaccgg cttccaagag cattacaccg tagtttgccc aagcggtgaa cgaattgatg
    43741 tgctgttgaa tgtgccgggt atgcacaatg ccttaaatgc aaccgctgcg ttagcggtgg
    43801 caaaagaaga agggattggc aatgaggcga ttttagctgc tttagctgat ttccaagggg
    43861 caggacgccg ctttgaccaa ttaggttcat ttattcgccc gaacggcaaa attatgttag
    43921 ttgatgacta cggccaccac ccaactgaag ttgatgtaac cattcaagcc gctcgttcag
    43981 gctgggaagg taaacgtgtt gtgatgattt tccaaccgca ccgctattct cgtacccgtg
    44041 atttattcga tgaatttgta caagtactgt ctaaagtcga tgccttgatt ttattggatg
    44101 tgtatgctgc cggcgaagct ccgattgtgg gggcagacag taaagcctta gcccgttcaa
    44161 tccgtaattt aggtaaggtc gatccgattt tggtttcaga taccgatcaa cttggcgagg
    44221 tattagatca aattattcaa gacggtgatt taattttggc acaaggtgcg ggcagtgtaa
    44281 gccgcatttc tcgtggcttg gctgagagct ggaaaaatta aatactctct ccccttgcgg
    44341 gagagagacc gaaaaatact tcgttcagaa gtatttttca gagagagggt atatatttaa
    44401 aggatttcaa atgagtatta aaaacgaaaa aattgccgtc ttattcggtg gcgtttcgca
    44461 agagcgtgaa gtttcactga attctggtgc agcggtaaca gctgcattaa aaagtttagg
    44521 ctataacgta gaaggcattg atactaaaga attcccgatt gaaaaattaa aagaaaaagg
    44581 gattcagcgt gtatttaata ttttacacgg cggtattggc gaaaatggcg tactgcaagg
    44641 tgcgttagag caaatgggta ttccttacac cggttgtggc gtaatggcat cagcagtgac
    44701 gctggataaa ttccggacta aattattatg gaatgcagta ggtttaccaa cagcggatat
    44761 ggtggtggtt cagcgtggac aagcggtcga ttttgaccaa attattgcaa aattaggctt
    44821 accggtattt gtgaagtctt cgtgtgaagg ctcaagtgtg ggtgtattca aagtaaaaac
    44881 caaagaagaa ttggcaccgg caattcacga ggcattaaag tttgattcca ttgtgttggt
    44941 ggaagaattt ttagccggta atgaatattc tgtaccggta ttagacggac aagttctacc
    45001 ggcggtacaa gtaattccgg acggcgaatt ttatgactac cacgcaaaat atgtgtcgga
    45061 taacacccaa tatgtagtac cggcattaaa tgacgaacgc caagcagagg tcgccaaatt
    45121 agtgaaagcg gcttacgatg tggttggctg tcgaggttgg agccgtattg atgtgatgga
    45181 agatggcgaa ggaaaattcc gcttggttga agtaaatacc aacccgggaa tgaccagtca
    45241 cagtattttc ccaaaatcag cagcaacagt tggtatttcc tttgaaaaat tagttgaacg
    45301 cgtattggag ttaagtgctt aatgggcatc ttccgcaaga agaacagcac aaatgtgcgt
    45361 ttgaatgttc ttaatccaaa aacacctgtt tctccacgta aatggctagt attcattaag
    45421 ccattaattg tgttattatg tacactattt gtattcggtg tgtatagtaa ttggcaaaat
    45481 atactcgaaa gttgggataa aacaccgatt cgcgcttatg cattaacaca taaaacacaa
    45541 tttacaacaa atgcagatat tcgtgaaact ttgtctaaag aacctgctct aaaaggatat
    45601 ttcggacaaa atattcaaga ggtcaaagat aagcttttat ctataccttg ggttaaagat
    45661 gtggctgttc gtaaacttta tcccgaccga ttaagtatta ctttgctaga acataaaccc
    45721 gttgcaattt ggaatgatac taactttgtc tcagaacaag gaaccgtctt tagtttaccg
    45781 aaagacagaa tcgataaaaa tggacttcca ttactctatg gtccagatac ggaaggaaaa
    45841 agtgtattag aggcatggaa taaaatccga gctgatctaa atgcccgcaa cttggattta
    45901 acctccgttt ctgtagataa tcgaggttct tggacaatta ggctttctaa tcaagtagaa
    45961 ttaagattag gaagagggga atggacttct aaaattgatc gttttgtaac aatctttcct
    46021 gaaattcata tacctgaagg taatagatta gcttatgttg atttacgtta tccacatggc
    46081 gcggcggttg gatttagtcc tataaaaaat taaactcagt gaacacaaaa acattatgac
    46141 aaaagcagta gaatcaaaaa ttatcgttgg tcttgacatt gggacatcaa aggttgttgc
    46201 cgttgttggt gaagtattac ctgatggtgt aattaatgtt atgggagctg gcgtttgccc
    46261 ttctaaagga gtcgatcgag gtggcgttat tgatcttgac gctgccgtta attctattca
    46321 aagagccatt gagcaggcgg aatctattgc cgattgtcaa attatgggtg taacactggc
    46381 aatctcaggt cagcatattg ttggtttaaa tgaagcagga tcatcaacat tatctggagg
    46441 tattgttacc caagataata ttgaaagtgc tgtggatatg gcaaaggcaa ttaaattaca
    46501 agatggctta gaaacattac acatgattcc acaagaatat cacgtggata gattgcctgc
    46561 gactaaaaat ccaattggct tatcgggtat gcgtttacaa gttcaagcac acttaattgc
    46621 ttgccatcaa gcttggttaa aaaacttaaa aaatgcggtt gaacatgcta aattaaaagt
    46681 cgatcaagtt gtattttcag gtcttgcctc tagctattct gttttaactg aagatgaaaa
    46741 agagctgggt gtttgcttaa ttgatattgg tggcggtacg atggatgtac tagtttatac
    46801 cgatggagca ttaagataca gtaaagtcat tccatttgca ggtaataaca ttactgatta
    46861 tttggctcgt gtatttacga catctcgccc tgaagctgaa agccttaaag taggttatgg
    46921 tagcgcaatt tcgcctccaa cccataattc agataaaaaa attgaggtgg caggactagg
    46981 tggacggatg gcaagaacct ttacccgagc tcaggtggca acggttacct cacaatgtta
    47041 taacgatttg ctaaaagttg ttgaagagga attaacccaa ttacgccatg aacttttcca
    47101 aaaaggaata aaacaagagt taattgccgg tgtagtcatt actggtggtg gctcacaaat
    47161 tgaagatatt gtagaatgtg ctaaatcaat ttttggttca caagttcgtg ttggatatcc
    47221 actcaatatt actggcttaa ccgattatgt gaataaacca caatatgcaa cagcattagg
    47281 gcttttacaa tatagccact ataattatac tgaacaaggt acaagtacag attctaatga
    47341 agatatcttt gctcctattg gtcgtggaac caagaaaatc attgacttct tcaaatcaaa
    47401 attttaatag tgttaaaata aacacgcagg gagataaaaa tgtttgaacc tattattgaa
    47461 caaacgcaag atgctatcat taaggtagtg ggtgttggtg gcggtggcgg taatgccgta
    47521 gacagaatgt ctcgctctgc cgatgatatt aaaggtgttg aattctttga tgtaaatact
    47581 gatgctcaag ttttaagaaa aagaaccaca cgccaaacta tccaaattgg agcaagtaca
    47641 actaaaggtt taggtgcagg tgctgatcca atggtaggaa aacaagctgc cgaagaagat
    47701 cgtgaggcta tcgctaatgc attaaaaggt gcaaatatga cctttattgc tgttggtatg
    47761 ggtggaggta ccggtaccgg agcagcccct gttgttgctc aaattgccaa agagcaaggc
    47821 tcactaactg taggcgttgt aacaaaacct ttccgcttcg aagggcctcg ccgtatgcgc
    47881 tttgcagacc aaggcattaa agagctttct caatatgttg attctcttat tataattcct
    47941 aatgataaat tacgtggttt aggtaagcaa acaacagcag tagatgcctt tgccgcagca
    48001 aatgatgttt taagtaactg tgtgcttggt attaccaata tgattaccag ttcgggcggt
    48061 tctaccggtg cagatattaa cgtggacttc gcggatgttc gtacagtaat gtctggtaag
    48121 ggacacgcta tgattggtac aggttttgct gaaggtgaag ttggtgaagg acgagcggaa
    48181 aaagcaatga atgatgccat ttctagtcca ttacttgaaa atgtggatat ttcaggtgca
    48241 agtggtatgc tcatcaacat tagtgctggg acagatttct tattagaaga agtttatgct
    48301 atgatggact taatttatgg ctttgcaaca gaagatgccg caattgtatt tggttgtaac
    48361 tattaccctg aaatggatgg aaaagtgagt gtcactcttg tcgcaacagg aataggccaa
    48421 cctgaggaag ctctacatat gccacataag gctcagccag tatatgcaca gcaaggaaat
    48481 catgttcaag ctacacagcc tactcagcca aaccatgcgg tacaacaacc aaactttact
    48541 caaccgtcaa gttatggtca gccaaatcaa tttagtggtc aaccacaacc actacaacaa
    48601 cctgtggctc caaaaccaca atcggttgat acagcacaaa tttttaaccc aaattcaatt
    48661 ccgggtttta tgagaaatag tcaataactt ccactcattt cggaagtaag gacaaaatat
    48721 gactaaacaa agaacattaa aacaagcagc aaaagtaaca ggtattggct tacatagcgg
    48781 caaaaaagta accttaacgt tacgccctgc cccagctaat acaggagtta tttatgcccg
    48841 taccgattta gagcctgtcg tttatttccc tgcaagcgca gactctattc gtgatacaca
    48901 attatgcaca tgtatggtaa atgatgatgg tgttcgtatt tcaacagtag aacatttaaa
    48961 cgcagcaatg tcagcattag gcttagataa tgttattgtt gaagtagatg cacctgaaat
    49021 tccgattatg gacggtagtt caagcccatt tatctatctt ttattagatg ccggcatcga
    49081 agaacaagat gcaccgaaga aatttattcg cattaaagaa acagtacgcg ttgaagaagg
    49141 cgataaatgg gccgaattaa aaccatacaa taaaggtttt aaattgaact tcactattga
    49201 ctttgagcac ccattaatcc ccaaaaatgt agggagctat tccattgatt tttctgctga
    49261 gaactttatt cagcaactaa gtcgagcgag aacctttaca tttatgaagg atgtagaata
    49321 cttgcaatct attggtcttg cattaggtgg aagccttgat aatgctattg tattagatga
    49381 ttaccgaatt ctaaatgaag acggtttacg atttaaagat gaactggttc gccataaaat
    49441 gctggattcg ataggtgact tatatatgtg tggttataat atcctaggtg aatttagtgc
    49501 atataaatca ggtcatggcg ttaataataa attattaaga gctgtattgg aaaataaaaa
    49561 cgcttgggag tttgttacct ttgaagataa agcagaagtc ccacaaggtt accaagtaca
    49621 acaagaaatt tttatttagt ctaaatggct taaaagacga acagaaatgt tcgtctttta
    49681 ttttgcaaat tttttctaat atttaaccgc ttgcaacccg cctcattagc gattttttcg
    49741 cccttatcta tttactgttt aaaaaaacag ttgtactata tacccataca gttaatcttg
    49801 tgtggtgtat tatgcttact caacttacta ttaataattt tgcgattgtt cgccatctta
    49861 ttcttgaatt aaatgaaggt atgtctgtta ttaccggtga aaccggtgcc gggaaatcaa
    49921 tcgctattga tgccttaggg ctatgcttgg gttatcgttc tgaaagtggg atgattagaa
    49981 acggttcgga caaagcagat ataagtgcaa cctttactat gcagccacat agccctgctt
    50041 atttatggct acaagagcat gaactgcttg atgaagataa tcctcaagag tgtatcttac
    50101 gccgtatgat taatattgat ggacgctcaa aagcctttgt aaataaccga tcattacctg
    50161 tttcacaact tcgagagttg gggcaatatc ttattcattt aaatgggcaa cacgcaccac
    50221 aattactcct aaaaaacgaa tatcaacttg aaatagtcga tcattatgcc acgttacagc
    50281 ctctattgat gaagatggca aagcaatatg ggaattggaa agaactgaat aagcaggtaa
    50341 aaaatttcca aaaacagtgc caagaaaatg aagctcgcaa acagctatta gaatatcaag
    50401 ttgaggaatt agatgaattt gcaattaaag caaacgaatt tgaagaaatg gaagagaaat
    50461 acaatatctt gtcttcttcc gaggagctta ctgagctttc agatgaaatc acacgcttat
    50521 taagtgatga tgaaatcaat gcaaacagtc tgatttataa agcgttacgc aatgcagaaa
    50581 acttggctga ggttgatagc caatatcagg gcattttaga tatgcttaat gaggccctga
    50641 ttcagattca agaagcaagc tccgaagtgg ctcaattagc cagtaaaatt gaacaagatc
    50701 cggaattact acaggagctg gataatagaa ttgcacaaac tatatcgtta gcacgcaaac
    50761 accatattca accgaatgaa ttatggcaat atcacgcgac attaaaagca gaactacagg
    50821 aattactgga ttttgaagat aatgaagaac aactcattca aaatgaaaaa caagcttacc
    50881 aagagtgtat aacattagca gaagaaattt accaaaaacg tctagatgcc acacataagc
    50941 tctctgaaca agtaacaaaa caaattaaac acttagcaat ggaaaacggt gagttcttta
    51001 ttcatataga acataatctt gaaaaaatgt ctgcaaatgg tgctgactat gtcgagttta
    51061 atttacgcag caatttagga caacaacccc aaccactggc aaaaattgct tctggtggtg
    51121 agctatctcg catttctctg gcagtacaag tgcttaccgc aaataaactt tctacgccaa
    51181 ctattatttt tgatgaagtt gatgttggga ttagtggctc tgctgccact acagtcggaa
    51241 agctactgcg taagctaggc gaaaaatgcc aagtattatg tgtaacccat ttacctcaag
    51301 tggcaagtta cggcaaccag cagtttaatg tacaaaaata tgtagaaaat aatcaaactg
    51361 aaacgcaaat gacattactc acagaagcag agcgtattca cgccttggct cgactattag
    51421 gcggaagcga aatcaccgaa acggttttag ctaatgcaaa agaaatgcta aatttagcga
    51481 aaaataacga atagccaaaa agaaaaatcg catcaatgaa tattgatgcg attatgaatt
    51541 tggtggaggt aaacgggatc gaaccgatga cctcttgcat gccatgcaag cgctctccca
    51601 actgagctat acccccttaa tacaagcgga ataatatgct ttccgcttga agatgtcaat
    51661 ggctttaatc aagcaaggtg ttgattgatt aaaaactagc tattcgcctg aataaactca
    51721 atcgcttttt gtaagcgagc taaggttctt tctttaccga ctaatttggc ggtgatatcc
    51781 attgacggcg attgcccact tcctgttacc gctaaacgga acggcatacc gactttgccc
    51841 ataccaattt ccagctcggc agcggtttgg ttcattgcct cgtggatatt ttccaccgtc
    51901 cagtcattgc aagcggtcaa tttttccaat aattttgcaa gtggagcaac ggcttcggct
    51961 ttgaagtttt tagcagcagc tttttcgtcg taagccttaa attcttgata gaaatagcgg
    52021 ctgctttcgg caagctcttt taaggttttg caacgttcgc ccagtacagg gataatttct
    52081 tccaattttg gaccgcttgt gaaatcaatg ccttgagttt gcatatgcca ttcaagatgt
    52141 tttgccacat aacttggggc aagactgcgg atatagtgtt ggttcaacca ttgtaatttt
    52201 tcagtgttaa atgcacttgc cgatttactg actgaatgaa tgtcgaacag ctcgatcatt
    52261 tcgtcacgag agaaaatctc ttggtcgccg tgtccccagc ctaaacgcac aaggtagtta
    52321 attaaggctt ccggtagata gccgtcatca cgatattgca ttacgctcac cgcaccgtgg
    52381 cgtttggaga gtttttgccc gtcatcgccg ttgatcattg aaacgtgggc gtaggttggg
    52441 attggtgctc ctaatgcttt caaaatgttg atttggcgtg gtgtattgtt gatatggtct
    52501 tcaccccgca caacgtgagt aatgcccata tcccagtcgt ccaccaccac acagaaattg
    52561 taggtcggcg agccgtcagt acggcgaata atcaagtcat ctaattcgct attggcgatt
    52621 tcaattcgcc cacgcaccgc atcgtcaaat actaccgagc cttcggtcgg gtttttgaaa
    52681 cgcacaacat gtggttggct cgggtcgttt tgcggattgt gtaagcagtg ctgatcgtat
    52741 ttcgctttct ctttatttgc ttcttgctct gcacgtactt cgtctaaacg ttctttcgag
    52801 cagtagcaac ggtatgccgt gccggcttct aacatttggt cgatcacttg gttatagcga
    52861 tcgaaacgct tggtttgaaa gtatgggccg tgttcccacg ccaaatccag ccattccata
    52921 ccctctaaaa tagcggcggt tgcctcaggg gttgagcgtt caagatcggt atcttcaata
    52981 cgtaacacaa attcaccatc attatgctta gcatataacc aagagtagag cgcggtcctc
    53041 gccccaccta cgtgcaagta gccagttggg ctaggtgcaa aacgggtacg gacttttaca
    53101 ttcggatcta aggggaaaag ggtttcaatt ttcattttat attgcctaat tgatgattct
    53161 taagaaaaac ttgtctattt tactacgctt gagggtgaat catagtaaaa aattaaattt
    53221 gcggggtaaa aaatcagcaa acggggtaaa aagaacaaaa agggtttgac gaaacagcaa
    53281 aaatctctat aattcacttc cacaacagcg ggcgattagc tcagttggga gagcacctcc
    53341 cttacaagga gggggtcact ggttcgagac cggtatcgcc caccacttca acttaagtgt
    53401 ttcgttgttg tatcacaatc taattttgaa aacgggcgat tagctcagtt gggagagcac
    53461 ctcccttaca aggagggggt cactggttcg agaccggtat cgcccaccac ttcaacttaa
    53521 gtgtttcgtt ttcaaattcc ctttgatttt aagtctcaag tgggcgatta gctcagttgg
    53581 gagagcacct cccttacaag gagggggtca ctggttcgag accggtatcg cccaccactt
    53641 aagactaaaa tcataaactt caaatggcga tttttcgtat ctgaagggcg attagctcag
    53701 ttgggagagc acctccctta caaggagggg gtcactggtt cgagaccggt atcgcccacc
    53761 atctatttag tatcaaagcc taaaacttat atcataatct aataacccct ttaaagtcat
    53821 aactaaaaag ggaaaataaa ttcagatggc ctgttgcatc tgcataaatg cctttctacg
    53881 tgcagaaatt aatctttttc tatctttaat ttgcttaatt tgacgcaggc gtaatttcct
    53941 tgtcagtagg gatttctttt tcttcaattt tctcataaga agaattctcc tgttttattt
    54001 gaccatctgg taaattttct tgttcttgca tcttttgctc ttcaactcgt tgataattaa
    54061 taatactacc ataataacgc cgtatatttt caacatactg taatgcttca tatcctcgag
    54121 catagccgta ttttagatta gcataataac gtttttccgc aagcaatggc agattctttt
    54181 taacatcaag ccaattatcc ggatcaccac caagttgttt tgttaatcga cgaagatcca
    54241 acaagtgccc caatcccata ttatacgctg ctaggctata ccaaattcta tctgcttgag
    54301 gaatagtttc cggcatttgt ctcattagca tatgtaaata ttcagatccc gctttgatac
    54361 tttgtgcagg gttagtccta tcagaaattt tcattctatc tgccgtatct tttgtcagca
    54421 tcataattcc cctcactccg gttggagaag ttgcattagg atcccaatga gactcctgat
    54481 aggcgatagc cgccagcatt tgccattcta attcaccttt atgtgcccga aaaaggggtt
    54541 catatttagg taaaatagtt ttaattgcat tcaaatagct ctgaatatca acataatcaa
    54601 acttagctaa atgattaaaa tatttctctt ctattcttga tatcagccca gtttccatag
    54661 aataagacat aaaatccagc agcacagatt gcagttcact ataagaacta tttgctaaat
    54721 accataacac tgggttttca tcagttaaat caaaccctac ggctaaatta ggattaatat
    54781 gctgtgcagc agaaatatca accgacattg caattgtatg tgaaatttca ccttgtgcga
    54841 cttttaacaa tagctcttct tgtgtaaatt tatccgagat ctgccatttt agttccggat
    54901 tatccacctt aagctgattt aatattggaa ttaccgcaga accggctgga ataatcacat
    54961 tttcccgcaa atcggaaagt cgatatggtc tagcacttcc ctttttataa acaagctgcc
    55021 aagaagccga ataataggaa ggacctatct gaaattcatc gtttaattca gaatggtaaa
    55081 gcagcccagc ggcagcaata tcaacatcat tatttcttaa ggcctcaaac aatttctcgc
    55141 tactatcata agttttaata tcaagattga cctttaaata ttgagcaaag gctgttgcta
    55201 aatcatattc aatgccactt tttccttcag gaccaacaaa gtaagaaagt ggatggttga
    55261 tcattccaac ctttaacgtt ttgctttgct gaatttgtgt ataatgattt gcttctgaat
    55321 gaatgatttt ttgccaagga aaaatcatat cccaagccca cagtaacaat gctacggcaa
    55381 taaaaaggcg agcaattaat cctttcaatt taaaatcctc attatttcaa gctaagcatt
    55441 aagcctatct gaaat
//
LOCUS       DANLVT010000003        43594 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.003, whole genome shotgun sequence.
ACCESSION   DANLVT010000003 DANLVT010000000
VERSION     DANLVT010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 43594)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 43594)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..43594
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.003"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            139..357
                     /locus_tag="PXC99_000131"
     CDS             139..357
                     /locus_tag="PXC99_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5416629.1"
                     /translation="MARNKRVRDMSNFEIRGELMKIGKSLSQLGIENGLAKTTVRNAL
                     DKPYPKGEQIIAKAIGKTPQEIWPSRYE"
     gene            367..2337
                     /locus_tag="PXC99_000132"
     CDS             367..2337
                     /locus_tag="PXC99_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu transposase C-terminal domain-containing
                     protein"
                     /protein_id="HDL5416630.1"
                     /translation="MKEWFLAKEIAGLSGVPELPNSVSRLATKEGWQKRQIQGVRGVT
                     YEYHLTSLPIETQQQLRLNAALAVIPQAAELQPKRDDPALIARLNNATDKGRDKAKGK
                     AEACMQLQAFLDQGFSYTQAEAGAATAKNVSQGSLKNWYYKVKGHPVHLWQAILISES
                     GRSKKPQLKAKITEEAWDCFLADYLRPEKPDLRASYRRTQAIAKQYGWQIASLQTFQR
                     RVLAEVPYEVILLKREGANAVAKLVPALQRTVKDILAGEWINGDGYQHNVFVKWHTGE
                     IVRPKTWFWQDVRTRKILGYRTSISENTDSIRHALMDVIFNVGIPKTLTLDNTRAAAN
                     KAMTGGIENRYRFKHTELDPKGIMPILGIDVHFTSILYGEGHGQAKPIERAFGRGGIG
                     EKIDKRPELSGFYTGRNAQETPDNYNGGKDGVDYNTFLKAIAAGIEEYNSQTERHTEM
                     CRGELSFNQVWERDYHPSNVRQASPEQLRLLFLQAETVSIKRNGSFTLKAAGKLYGLT
                     NVYWAESLIGITDKKVVARFDPDDLHGNVYVYNLEGQFLAEAVCREAKGFGDTSASRE
                     QGRLYQKVVKSAKAQAEALELLEAHELASLAPQVDVPEPIEKKVKEVLVKEDFIVDFN
                     TVRKATVVEETEEISIFDEVLLKQEKQLRIVE"
     gene            complement(2517..3005)
                     /locus_tag="PXC99_000133"
     CDS             complement(2517..3005)
                     /locus_tag="PXC99_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416631.1"
                     /translation="MLFRSLTDDEIHQIALDSARATFSGFKLKRANAIVMKNCITLFK
                     LSTINFCLAEYHSSFHHLTSIDDLDGIMPTVKKVAQMLSLQESKALIWLLYLKWLFVM
                     RQRSLQVLLENSADLIQGEVIAQPLPTFVKAVLAFQLETYHGLPEWIPEFDSAEFWQS
                     LS"
     gene            3037..3978
                     /locus_tag="PXC99_000134"
     CDS             3037..3978
                     /locus_tag="PXC99_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5416632.1"
                     /translation="MTLIDQIKQHIAESGSSQGKVAKEAGINAGALSAYLNENYKGNN
                     EELEAKLIAYLERIEAKKREFVEAPSFIETKTANQIFGSLRFAQNTGVLAIIHGASGV
                     GKTQAAREYRKRYANVWLVTASPSRSSLSEVLYEIALELGMNDAPRRKGTLARLIVRK
                     MKGTAGLLIIDEADHLPYEALEELRLLQEEVVNESDIGAGVGLVLIGNDKVYTRMKGG
                     INPAHEYGRLWSRSAKRTSIQKTKKEDTQAVAKAWGLSENQEALKVMQAITETGGGLR
                     ILTHTLRLAAMVAKDRMIPLTADLIQLARKDLLSTGD"
     gene            3981..4295
                     /locus_tag="PXC99_000135"
     CDS             3981..4295
                     /locus_tag="PXC99_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416633.1"
                     /translation="MRTPKPKHSFNRTNQAACRFLKQTQKAIIRLNSLGFTVLNIDFT
                     RIKPRIEVEIGNNKHIAQGLIYEGKAYRYSFGKSEDLGRWEGYYTMLEGIRVWWRQAA
                     IH"
     gene            4307..4543
                     /locus_tag="PXC99_000136"
     CDS             4307..4543
                     /locus_tag="PXC99_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416634.1"
                     /translation="MKTLALLTALLGLVGCDLVQSKQAKNYIGNNLTEICIDNVVYLI
                     YSGDKKGGITPKVNKDFYPYTCTNKEERQNGKTR"
     gene            4527..4820
                     /locus_tag="PXC99_000137"
     CDS             4527..4820
                     /locus_tag="PXC99_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416635.1"
                     /translation="MAKPDETPITKAECQSQLAELGVQYKKLPMAITRHICNATTNIH
                     GKVIKVSVVERVGYGVQITAQGNEKSCLVTYEAMLGMAEAMGLFDEVKEQNND"
     gene            4942..5160
                     /locus_tag="PXC99_000138"
     CDS             4942..5160
                     /locus_tag="PXC99_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANR family transcriptional regulator"
                     /protein_id="HDL5416636.1"
                     /translation="MNDELAAISASYAQHNRYQHYAEKAAEAERKGNYKEAQDHWEVA
                     KLSAKKTANRDWAEQRAEFCKRMHNKPF"
     gene            5170..5352
                     /locus_tag="PXC99_000139"
     CDS             5170..5352
                     /locus_tag="PXC99_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416637.1"
                     /translation="MTETVKAQLNSQLNEAIIQLIQAQKYLNQDDAIRSGVYIGTVQD
                     LLPKVHLKLLTANRKH"
     gene            5369..5758
                     /locus_tag="PXC99_000140"
     CDS             5369..5758
                     /locus_tag="PXC99_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416638.1"
                     /translation="MAITEEQWKEIKQKLDSIIGRVKFRYKEHLLTVDVVQIKRSLKL
                     AVYVDGEIDGAWTKEGHEIRPYLEEVWYRKERPFFNAKEKKEYRGLMSKKKLNEKIVT
                     YSPMFPSPTALTRQYKKLDGLELIEVI"
     gene            5807..6094
                     /locus_tag="PXC99_000141"
     CDS             5807..6094
                     /locus_tag="PXC99_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416639.1"
                     /translation="MNKNEFFKKYHLEGSLAILDLDANDDQSQFCYQALLEYRELPLD
                     TFLAEYSDDEDMTESEFIELMLDELEWIIRRAKNAKRFVKKRQKTMREEIM"
     gene            6213..6758
                     /locus_tag="PXC99_000142"
     CDS             6213..6758
                     /locus_tag="PXC99_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1018 domain-containing protein"
                     /protein_id="HDL5416640.1"
                     /translation="MTDKAKLIQLIHIAKSQLAMDDLSYREMLKRLTNKTSSTKCTVV
                     ELHKVLHELQTKGAKVKYFAKRSKKPTAYSPATGETAVKSQIAHKIRAVWITMGKHGF
                     LNDPSEKALNAYMRKVINNKTRPTILLNVSALEAGDASYMLEILKKWHKRVMIKALSK
                     SCTVDPKISYDELVEWYNEVM"
     gene            6745..7278
                     /locus_tag="PXC99_000143"
     CDS             6745..7278
                     /locus_tag="PXC99_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416641.1"
                     /translation="MKLCRCPICHSDIHLEALVEDEAGRELLGKISQLTHGVAQPMVA
                     YLGLFKPQKSNLNNSRALKILNDVLALYPCSLLLAQALSETVVSIRKKRQQAMENGQK
                     IEPLPNHNYLKSVYETQKVHFAVVRTGKTERETMKAELEKTRNAIAYVQRFVDLGREE
                     VVKNSPEYQIWLAHKPK"
     gene            7443..7802
                     /locus_tag="PXC99_000144"
     CDS             7443..7802
                     /locus_tag="PXC99_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5416642.1"
                     /translation="MELVDIFEEKAPEVLTDLAKHIEVALEEKCQFSPEKAKQIGIDI
                     AQQMAQNWGGEVIYIPRNLLMALNERDMKIYEEFNGNNHRELARKYNVSMQWVYKIVK
                     KVHKDEVARRQMSMFEM"
     gene            7938..8447
                     /locus_tag="PXC99_000145"
     CDS             7938..8447
                     /locus_tag="PXC99_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 108 protein"
                     /protein_id="HDL5416643.1"
                     /translation="MSQNLTFRQIFDRLIGHEGGYVNHPQDPGGETHWGITKRTAVAN
                     GYMYAMKNMTREQAYQIYEKAFWQRYRCAELKPAVAYQFFDAVVNHGFGNASRMLQRA
                     VGVADDGIIGNITLQAINAKSESDLLMLFNAERLKFYTKLRNFPTFGKGWVNRVAGNL
                     EYAAQDNEV"
     gene            8450..8719
                     /locus_tag="PXC99_000146"
     CDS             8450..8719
                     /locus_tag="PXC99_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2644 domain-containing protein"
                     /protein_id="HDL5416644.1"
                     /translation="MAKLFKELLSTNGTLSTTSTVQFFGTLCVFGLMVYAVITQQPYA
                     ESLLNNVLIYLFGATTAKGVVTSYQAKIKGGIHKQQSTFKEEEGC"
     gene            8713..9060
                     /locus_tag="PXC99_000147"
     CDS             8713..9060
                     /locus_tag="PXC99_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2681 domain-containing protein"
                     /protein_id="HDL5416645.1"
                     /translation="MLMQQILGVIGVIAAILSYALFKSWQLKRERKKNAILQAEKQQQ
                     AVEIEQKKAEVKYVYISKKNNEKVTRSSASDIDDKLQQHGYFRDNNRLHGVQSDLSEP
                     CGYAGNETSDSCS"
     gene            9087..9239
                     /locus_tag="PXC99_000148"
     CDS             9087..9239
                     /locus_tag="PXC99_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416646.1"
                     /translation="MKYIKKLRKRWQIWRFLKNHPEVAQRRDLLAIAIKQGVENPVGR
                     ARRREP"
     gene            9239..9574
                     /locus_tag="PXC99_000149"
     CDS             9239..9574
                     /locus_tag="PXC99_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2730 domain-containing protein"
                     /protein_id="HDL5416647.1"
                     /translation="MDLFTVFWESIRANFGFISALLTIVVTAFWLKLDSKYAKKNDLG
                     ELLEIAKSHDNRLTTLETKVENLPSAVDVEKLKTLVTDVKGDTKATSKQVDSISHQLG
                     LLLEAKLKE"
     gene            9576..9872
                     /locus_tag="PXC99_000150"
     CDS             9576..9872
                     /locus_tag="PXC99_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416648.1"
                     /translation="MSLRDLLTQDQRLVILRSLAEAGYDANESIISDCLDLYGHDISR
                     DLVRTHLSWLEEQGLLTLERLRDGYMVASITQRGLDVAQGRVVVSGVKRPRPKI"
     gene            9895..10467
                     /locus_tag="PXC99_000151"
     CDS             9895..10467
                     /locus_tag="PXC99_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3486 family protein"
                     /protein_id="HDL5416649.1"
                     /translation="MSEKNTRGRASKVDLLPPNIKTQLAMMLRDKQYSQSQILEEIND
                     LIRDCGLPDEMLLSKTGLNRYASRMERLGAKIRNAREVAEIWTKQFGEMPQTDIGKTL
                     MEMVKQIAFETSLKLGEQEGGIEPKQLALLSSAIQRLEQAESLSFKREQAIRKEVAQQ
                     AAETAEKVVVQAGLSAETVRTIKEQILGIA"
     gene            10467..12023
                     /locus_tag="PXC99_000152"
     CDS             10467..12023
                     /locus_tag="PXC99_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase family protein"
                     /protein_id="HDL5416650.1"
                     /translation="MALLNNRPLNELAPECRSFLESIHAFNPNELLLGYQKRWIADDS
                     QLKIAEKTRRCGLTWAEAADNALIASTRKSDGGSDVFYIGSNKEMAREYIDAVAMWAK
                     AFNRVAGEIQEEIFEDEDKDILTYVIYFSSGFKVKALSSNPKNLRGMQGVVVIDEAAF
                     HEYLAEVLKAALALTMWGAKVRIISTHNGSENLFNELITDSRAGRKRYSVHTITIEDA
                     CRDGLYQRICQVVTKKTWSPEAEKEWIENLLNDTASEEDALEEYFCVPKFGSGLWLSR
                     ALIERQMSEATPVIRFTAKDGFSLVAEPTRYAEIAEWCELELEPILATLNPDLLHFMG
                     EDFARSGDMTSLVVLAQQQNLVRKVAFIVELGNMPYKQQEQIVMFMLKRLPHFAGGAF
                     DARGNGGYLAEAARDEFSTLIDCVQLSEKWYREHTAPFKAALEDGELEAIPKDADILA
                     DLRSFQVVKGVPRIPDKRTKSADGKSKRHGDTAISLLLAHYASRQLVQMPVEPVSRRP
                     RHSQQLTEGY"
     gene            12142..13596
                     /locus_tag="PXC99_000153"
     CDS             12142..13596
                     /locus_tag="PXC99_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 family protein"
                     /protein_id="HDL5416651.1"
                     /translation="MAKKNNLISEIATRARSIDYWAFGYYLPNPDPILKRMGKDISVY
                     RELLSDGQVRSGVRRRKAAIKGLEWRITTTNNEKVDEQIYQIFNRLPMNNLITEMLNA
                     ALYGYHISEVIWAKEGELFVPTEIIGKKPEWFMFDDENLLRFRTKENWADGELLPDDK
                     FLLTTQEATQDNPYGLGDLSLCFWAATFKKGGFKYWLEFTEKYGSPWLIGKHPRQAHN
                     TDKERLADALEGMISSAIAVIPEDSSVEIKDAAGKSASTDAFEKFLNFCKAEINIALL
                     GQNQTTEQESNRASAQVGLEVMEDIRSDDQAMIEATFNTLLQWIVKYNFNVEQLPKFE
                     FYEQEAINTDQVERDSKLHAMGVRFSKAYFEREYGFEAGDIEVQAVEKAEKSANTTEF
                     SEGQRRTQVPMPVPILEQLEHEGEAMVDDWLQGVRDKLAQADSLEDFQSQLDSLIPEL
                     SFAEYGELLALGSTVAELAGRQSVNDEIKAKRNA"
     gene            13589..14866
                     /locus_tag="PXC99_000154"
     CDS             13589..14866
                     /locus_tag="PXC99_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDL5416652.1"
                     /translation="MRKFTFKQQAQYFEKKLNLRTNSYLDILGEEHDYFFVVAGANRN
                     EVLSEFRKAVDEAIHNGETLENFRKRFDEVVAKTGWEYNGGRNWRTRIIYDTNVYGAY
                     NRGRLQQHLELAEDMPYWEYQHNDNAHPRPQHVAWDGLVLRYDDPFWKYHYPIKAYGC
                     HCTVQALDDFDLKHDGKTVSPPPEIEFEQKTVGVRTGNSRVVTVPKGVDVGFTPHNFD
                     NLKAGRAANVDKLLMQKMVTADPIFASKAVSDLLAKEPVAKLHNQAFKNWVNDVANAK
                     GSALSQVENMQLLGVLPVAVIERLQQINLAPQSAIIAITKGDMVHALRELKQNTGIAV
                     PLEFWEKLPAKLQYPNAILLEKQQAETTLLFIYDVAQTKIAVKVNYDATLQDRHGAKG
                     RQKVLLNRAVTGSLFQDTTGLKSSKYEVLLGEM"
     gene            complement(15068..15412)
                     /locus_tag="PXC99_000155"
     CDS             complement(15068..15412)
                     /locus_tag="PXC99_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416653.1"
                     /translation="MMVNAEQAIELVYDLLLSRQWLVTKAEKLPLDPLSEKEAVMFLY
                     TLDQQTEASWLQLTPEQRATANGLIMDFIAKCLTSTKQWLVSDNIVPELQAIEIIKHE
                     IFLSHNSLVMPN"
     gene            15476..15940
                     /locus_tag="PXC99_000156"
     CDS             15476..15940
                     /locus_tag="PXC99_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDL5416654.1"
                     /translation="MIKITLNNTQAVKSLQQIANQLEQPRRLYGILGETLKKIHTARF
                     KAEQDPDGNNWKPLASSTLALKRKRGKSTKILRQDGYLADKTAYNVTSDNVEFGSQEV
                     YARLHQFGGKAGRGKKVTVPARPWLGVGDKDEQLLLRKAEWHLGQIIGRMGK"
     gene            16175..17290
                     /locus_tag="PXC99_000157"
     CDS             16175..17290
                     /locus_tag="PXC99_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HDL5416655.1"
                     /translation="MTQIEIFKAGKRYDANGTLIDITPEMLQQTVAAYNPEFHEAPLV
                     IGHPKSNNPAWGWVKALSLEGDVLKAEVDQLDAEFSEMVASGKFKKVSAAFYLPDSPN
                     NPHKGVLSLRHVGFLGAMPPAVKGLKQVEFAEDDDFVVFSEWGVASLFSRFRDWLVSE
                     FGLEKADKALPPHEIDWLKEEAMRSQISKQVHAEQATPEPIFNEPAQPEGEPEMSAEE
                     KEELERLKAENEQLKAEKAQAEAEKMEAELEAEKAGNAEFCEGLVKQGKLAPVAKAAF
                     VQALNNLSVLKAGREPEFNEGEDVVSQFKSAMSQSPQIIQFGEYATADKANPQEAEAV
                     EYAEGTDPVSIEADQKVRAYMKAHNVGYAAAFNAIYR"
     gene            17321..18247
                     /locus_tag="PXC99_000158"
     CDS             17321..18247
                     /locus_tag="PXC99_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HDL5416656.1"
                     /translation="MTTHNLQKLRVQDPVLTELAQGYHNNELVAETLMPTVEIEKEAG
                     KIPTFGRLAFRLPSTVRNLRGSSNRLDPEDIGAIDVALEEHDVEYAIDYREENEAIFS
                     LRQFALNTTQDVIALGREKAVATLALDESRYETDNKVTLSGTSQFSHKDADVFKVFDT
                     AIRAVKRAIGRKPNVCVISGDVWAALKEHPAVVEKLKYSQVAIVTPEVFAKLIGIETV
                     KIGEAVYEESGQLKDIWSKDIVVAYVAPRSTGGKGTVYEPSYGYTVRRQKGLFVDTYK
                     ESGGKIEVVRTTDIHKPHLVGAAAGYLIKAAV"
     gene            18316..18597
                     /locus_tag="PXC99_000159"
     CDS             18316..18597
                     /locus_tag="PXC99_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416657.1"
                     /translation="MAKFIVLHTPILHDGKRYEVGAEIELTAEQAENNAINLKAVEAV
                     PKPPKNASKPEDEPKPEGEPKPEDAVTEDDVKLAEAKIAEAEQPKGNKK"
     gene            18597..19031
                     /locus_tag="PXC99_000160"
     CDS             18597..19031
                     /locus_tag="PXC99_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1320 domain-containing protein"
                     /protein_id="HDL5416658.1"
                     /translation="MYVQIDELLTAFSRKIVVQLSNDEPTATEPDLKMLETAVKVANE
                     RIDAALRSRYTLPLADVPTLINQHALTLARYWLYARRPETKMPDTVKETYQQAVKELE
                     QIATGKLHLGIAESSQILEDDVLADNSEYEVRANARIDTSRY"
     gene            19037..19534
                     /locus_tag="PXC99_000161"
     CDS             19037..19534
                     /locus_tag="PXC99_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gp37 family protein"
                     /protein_id="HDL5416659.1"
                     /translation="MSATQPILEDICQHLRQALPEWEVELFPNDPSTYHLSHINGAVL
                     ISYLASKFEKPRTTQAVLQVRHVQIALTVLTRDLHNDVGALDLLDKLRLLVVGFKPQN
                     CGECWLIDEFFNGSSEETGLWQYQLILQTETQQVQHQAVENLPKFVTAHLRRQDQPGS
                     PGLKT"
     gene            19619..21004
                     /locus_tag="PXC99_000162"
     CDS             19619..21004
                     /locus_tag="PXC99_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath subtilisin-like
                     domain-containing protein"
                     /protein_id="HDL5416660.1"
                     /translation="MTFHHGSETERVNGGSVPVSVVDSAIIGIVGTAPIGAVNELTVC
                     LTKKDFAKFGTILNQGFTLPDAFDILARYAAGKVYVVNVLDPSRHRTTVTDEVLTLDR
                     NTLTAQTAKTGIIAVTRVKDGANVLNADRYSVDLQTGVVTFVSAPSAPKISYIYADPS
                     KVTEEDIKGGVDSLTGKRKGFELLRDGFNLYGADAKILICPEFDKTASCAAALATLAD
                     QLHAKAYIQLPKGTSLSKAIQGRGPAGTINASASNENVRHFFPYALGSSNTLESLATH
                     AAGLRMLIDVEKGYWFSTSNKELKGVIGLEIPLTARVDDKQSETNLLNAVGITTIFNS
                     FGTGFRLWGNRSSNFPTVTHISNFEVASRTGDIIDESIRQAELQFIDLPIDDALLDSF
                     LETIDTFLRTQKSLVGYSVSLDYEYDLVDAFSRGQVPIVYEYTPKIPGERISNKSVMT
                     RKYLANLVSQR"
     gene            21015..21530
                     /locus_tag="PXC99_000163"
     CDS             21015..21530
                     /locus_tag="PXC99_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HDL5416661.1"
                     /translation="MSIAINQIVNGNVYINGNSQMGRVNEVKIPDIEFEFIEHKGLGM
                     HGVIKLPAGTNAIEAEITWDSFYPEVRAVMLNPYKYTQLQIRSNLQVFNSQGLAAEEP
                     MVTIMNVSAGKIGGTGHKNKENAEFADTLNVHSIKQTVAGRELLFIDVLANIYRVNGV
                     DVLQKFRTNIG"
     gene            21626..21940
                     /locus_tag="PXC99_000164"
     CDS             21626..21940
                     /locus_tag="PXC99_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HDL5416662.1"
                     /translation="MANAAQQVLTNLRVQTTYKLQYPIALPDGRVIETLDVRRPKGKD
                     FRLLDEKGFDPEKDGVKILRFYIQQLTTLVPEDIDELDAADIKGLNNLLEDMLIEGKS
                     DK"
     gene            21937..22089
                     /locus_tag="PXC99_000165"
     CDS             21937..22089
                     /locus_tag="PXC99_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005658873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HDL5416663.1"
                     /translation="MSELDTVYADLAWWFKFSPSELLELDLVDIPKWVEQMNRQIKAG
                     YGQILR"
     gene            complement(22068..22370)
                     /locus_tag="PXC99_000166"
     CDS             complement(22068..22370)
                     /locus_tag="PXC99_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416664.1"
                     /translation="MLTKLNNRITEWAGFEACVTRTECTAKWLLAVALVGWSIFYWLD
                     AIQSIQSLSEGVSFVLIYGLILTILAWVGVYLAWGVAILLTLATEPFIWLYRKICP"
     gene            22418..25075
                     /locus_tag="PXC99_000167"
     CDS             22418..25075
                     /locus_tag="PXC99_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5416665.1"
                     /translation="MANNLAIGMVIGASLSSGFHGAFSGAKKKLEQLEQAVAKNQQSH
                     SKLGSELTALRSKQATLYAEMSRASSKGGAGLALMQQEYKKIGKEIANISREQRKWST
                     ELEKSIAKQTKLRNAMERHTQAKENRDELKGKIIGTVASAAMGVGVMKTYMEQEEAAN
                     NLKISMLKADGSFGKFEEIGKIADTLGTDLPGTKKDFYKLAMALKKQGVSDDVLTGGA
                     LKTSAELNVLLDMDQESGGEFLAKFMESHRLNENELPQAADYLQRAMFAGGLSKEQMY
                     ESMKYYAPKLNSMKLTGAENTEKVLAIEAMAGQQGLEGSTFGTGLNMMLSRMNKGPEM
                     LKAAAKGMKAEAREMMEAVGVEFNFWDKNGSFKGIDGMLAEMTKFEKIRKKFGDKGVG
                     LVAEELFGIEGGRLADILAMKGQKGLDEMLSKMREQASLQDRINLKTNTLGAALESLG
                     GAWETFVGDIGSVFAEDIKGFSKGLQSAVEWLVPFVSKHKEAIKFVGGLVAGLVILRG
                     VLQAGSFVIQTVTMAMNALKIAAMTNPIVLVIGAIAAGAYLIYSHWDSIAPWFANLWQ
                     NVTAYFNQFWTWVKGVWSGVTDWVSSVWNGVATFFGQLWTTITSLFSVAWTNIQTIWG
                     GATAWFSGLWDGIKSAAFGMFDSISQKVSSVVASIKSFLGFGDDVDKMGAKIGNVATQ
                     VISKEHSGQLSKTADMAANTGFSSGGFTGQGGKYTPAGIVHKGEYVMTKEATSRLGVG
                     MLDSLNYGGAMGFTQPVLQPILGKQKGFFGSLWDDVKFGANFVGNLLGLNQGSLKTPD
                     FNPNATNASGQNSSIFSNYEPLNRNAVTQQESSQAPQIVVNFNPTINVNGNATQEAQS
                     QIMQQLQMSAYEFEKLLNRVLDQRSRRAY"
     gene            25085..26008
                     /locus_tag="PXC99_000168"
     CDS             25085..26008
                     /locus_tag="PXC99_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5416666.1"
                     /translation="MYFMLGNIAFEPVNLTEFSEQHTAEFAEHAVLKGKPRLQAMGEK
                     LNELNFSLRLHHTIGGVESRYQALLEAKAKQAALALIWGSRYKGDYVIVDISSTTLFT
                     DGRGNALAREMQISLKEFVGDNDGGVLGEALNFGGGSLLGSILPSGAVTTLSQIKTAV
                     SRGVELYNSGKRLVDEVQNTVAIIRQLKNDPATALAYLPAALANLDGALGHFGNLTGS
                     SATLGGLQEKLPAAVVFSEEIGEIYQSLQTMRSSLGNASANSWDNWFTPAESALTEVT
                     DSFDHLAKPVAKMTAWIVLRTDEEAENDTVA"
     gene            25992..26219
                     /locus_tag="PXC99_000169"
     CDS             25992..26219
                     /locus_tag="PXC99_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HDL5416667.1"
                     /translation="MTQLLKHIVKQGERWDNLSYQYYGNAFEYGRIIDANPHIGFCEV
                     LPIGVTIYIPVLNVKPTNNENMPPWLRGRDA"
     gene            26212..27276
                     /locus_tag="PXC99_000170"
     CDS             26212..27276
                     /locus_tag="PXC99_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416668.1"
                     /translation="MRNVPKPDFSLFYEKTNITAEIEPHLVQLTYIDHLEGQSDELTV
                     EFEDIQGKWIRQWFPTQGDKLKAAIGYQGEFLTDIGEFEIDEVEYSYKPSTINLKALS
                     TGISKANRTLKPKAYENTTLAQVVAKVADNLKLKVVGKIKAIPIKRITQYQERDVEFL
                     ARLAREYHHSFKIVGNQLVFTDKSELGQSEPVLMLEERDTISLRLRDRIKDTAKAVEI
                     SGYDTSGKKVVKKRKKAKALRPNIKQAKSASEDTLKIITRGESQEQIDARGEAALATQ
                     NEDQAAGDIELIGNPKLVAGATILLRNFGVFSGKYLIKSSRHTISRSGGYTTHIEVRM
                     LEFIADDLITLGMEAGNANA"
     gene            27263..27799
                     /locus_tag="PXC99_000171"
     CDS             27263..27799
                     /locus_tag="PXC99_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL5416669.1"
                     /translation="MQTHNFGATYQEGIVSAVDPKTHKVRCKIPALEDLETAWLSFLT
                     PNAGGNQFYCLPDVGELVAMLLDAQGEGGCVFGAIYNEQDPTPVADSDMWVKKFSNGT
                     EISHNRKTGDVVVKTNGHLTATAQGGATINANTVVNGTLHATGKITSDEEVSAPVVKQ
                     GTVELGTHKHGGSPEPNK"
     gene            27854..28216
                     /locus_tag="PXC99_000172"
     CDS             27854..28216
                     /locus_tag="PXC99_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HDL5416670.1"
                     /translation="MNRQTSIQLTHWQLAPSTDTVEVVQGIDDIHLCIVNILSTQKGT
                     DILRPEFGSDHFRYIDYPEDVAIPNFVREITTALQKWEKRIEVEEVLVDGSAPHFIFT
                     VMWHLTDDVYREIYRTTV"
     gene            28226..29329
                     /locus_tag="PXC99_000173"
     CDS             28226..29329
                     /locus_tag="PXC99_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HDL5416671.1"
                     /translation="MTEAIKIIDDDVKTVLAEAIADYEKRTGKILQPAHIERSIIQTY
                     AYREQLLRKGINHAFLQTFPQFATGIALDLCGETFGCYRLRDKPARTLLRFSVSGEHT
                     AIVIPKGTQVAINDELYFSTLNDDVITPLITYVEIDAECNQVGVIGNGWESGRVSKLK
                     TALATNYKVTVENIDITSGGLMQEEDEPYRKRILAAPEAFSNCGSIAAYDYHVRSVSQ
                     DIADVNISTPRGGLVRIAVLTQKGLPDTRLLDDIKKHVSAERLRPLCDMVEVIKPTER
                     RYQITARLILLDGYREDLVKAKAREALQLYLSDKTKKLGLDIVPSAIISALRVEGVYD
                     VNLIQPVKTIINETEWANCTAISVEVEEERRDG"
     gene            29322..29888
                     /locus_tag="PXC99_000174"
     CDS             29322..29888
                     /locus_tag="PXC99_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5416672.1"
                     /translation="MASLHYADIIVRDPKYKALADLSKRLNLLDTSQIMTTLVDLLGD
                     ECIPLLAEKWSVTGYDGLLVADSENSKRALIKRAIELHQLKGTPWSIREVLRRLGFGE
                     VEIDEGLKNRLYESTYVSGIPENERWAHYAIRLSNPITNEQARNIRKVLRNFAPARCS
                     LAVLDYKADPIRYNNKATYNGTYNHGSS"
     gene            29898..32177
                     /locus_tag="PXC99_000175"
     CDS             29898..32177
                     /locus_tag="PXC99_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HDL5416673.1"
                     /translation="MAGVQETAQWENHVYRIEENDPVHGGENGVTNKPIKHLANRTLY
                     LRRLLTEAGQRINPKKITATSKNSNDLTGHTHEIDHASLTQKGIVQLNASIQSTSTTE
                     SATPSAVKAAYDKAATAEQKATLANEKVEAIKVGGRNLLIQSNTPHNGNAYSVRYALA
                     EAPKVGEEIVVTLWGELGSQRTGIGVYNSQGATELAKLVKIRDGVYQGKGIWRKPMSE
                     GRERTPNDTHLNVYFYPKTATDNNRIERIQLERGSIGTDWTPNEADLKAEISAIRTKL
                     IPVRGGNVATTLNAAKRSDWFREMQIPYQSGWGYYTQAFHNSGTQHNYSNLPLTGRYY
                     FIAELYHNSGYSHLRITYPSLKRTFESAINLNNEDLILDWREVVFLKDGLYQGTFKTT
                     GTLESAYRLRAARDDERYQPYLQMVDMGYDLANPPVGKNKIIGSVDYYVKNGTSESSK
                     ATMMAAAMPDKNVFWEVALWNAAQQRNVLFKGYSKTNNLSIGKTTDNERDRVQVNGTI
                     QATAPADNANNDQVPTTAWVRKMAKILADGKVSKAGDTMTGHLFIKNGEYSAVHTYNT
                     SGWFAKWEAAPLSDSHFAAIVYANDRETVINRVLIPKKNGTVALINDIADTVRAAVSR
                     SDKSRSRTFPLQTGKKYTTTGSVTIYPDGRIVQIFHLKNIKAAWFDYEASAVGDRHRV
                     VNIPLWTAMPNKIFDVDVKTVRPSNNASTYYIEAAEWLSAWQIYGNDTNKSSVNINLS
                     RFRGGKDEDMDLYVTVEGY"
     gene            32178..32780
                     /locus_tag="PXC99_000176"
     CDS             32178..32780
                     /locus_tag="PXC99_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416674.1"
                     /translation="MAYFVNVIDEQGNYELIDDEFIGLYPDLDFNTLPKLTDKQYQTY
                     LAKANGKERFVNGEFVYEQIKVDMQAVISAEKSAKLAEINQKAQAFINDLAKYNETPK
                     FERDTWLEQAKEAKAWVADPTVQTPTLELIAQMRGIPLDTLRQKAYEKAMAYQTVAAI
                     VAGQRQGYEDRLEQAETLEQIQAIEPMYQLPQGANNEQTD"
     gene            32764..33039
                     /locus_tag="PXC99_000177"
     CDS             32764..33039
                     /locus_tag="PXC99_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416675.1"
                     /translation="MSKLTKLKSWSYHVLIAIDQLFNALTGGAADETFSSRCYRGAVL
                     AENPKKRWRFWHSFLNCLFLDPKHCYAAYKAEVHRKQYPKAFRLGGI"
     gene            33039..33326
                     /locus_tag="PXC99_000178"
     CDS             33039..33326
                     /locus_tag="PXC99_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416676.1"
                     /translation="MKKQNLKLVRGDDVSFRFSIKDSTGQPLALKDLWFDLHLVSYQG
                     EVLIALSTDDGSIETAEAGQMVLHFSHQQTARAEWTSANYDLQLTHDYTRV"
     gene            33336..33500
                     /locus_tag="PXC99_000179"
     CDS             33336..33500
                     /locus_tag="PXC99_000179"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416677.1"
                     /translation="MTSIIELDLTDDLIIEVQLDSTIITGDSFLANLPDLLQIYNQAK
                     SDSSKELNND"
     gene            33493..34197
                     /locus_tag="PXC99_000180"
     CDS             33493..34197
                     /locus_tag="PXC99_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416678.1"
                     /translation="MTKHKNHENHPIAITFYQLGKDVGDINRRLAVIEQREQSAQPSQ
                     PQAEAVTMPQQDAVAINNINAVLEAVEKYKTFEKYNTQWQERFEKFLSRNPNDYELSE
                     EQRQKLYHTMCQHLWQVNFTEINSKQYELPIPQQFQGKFGYIVKTSGGSTEISFELLS
                     ETHSTYLYPDSYIPEGGGDVMLKPAYIYLVIPDLVAMREPEVVGVSPLKLNILQKHLL
                     TPQKLQEQKPLNTKAN"
     gene            34585..35373
                     /locus_tag="PXC99_000181"
     CDS             34585..35373
                     /locus_tag="PXC99_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416679.1"
                     /translation="MFLSHFKQVLNANIEADGKDWTIIDVFGGSGLLAHTAKREKPLA
                     RVIYNDFDNYAERLNHIKETNQLRQEIYQIVDEIIPKNKRISNEIKAKIINKINDFEG
                     FKDLKCLSSWLLFSGEQVATLDELFKHDFWHCVRQSDYPEATGYLDDIEVVSESFHQL
                     LPRFHDKEKVLLILDPPYLCTRQESYKQENYFDLIDFLRLIDLTKPPYIFFSSTKSEF
                     IRFIHYMVQNRKENWQAFEGAERIVVNASASYNGKYEDNMVYKF"
     gene            complement(35410..37848)
                     /locus_tag="PXC99_000182"
     CDS             complement(35410..37848)
                     /locus_tag="PXC99_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S6 family igA-specific metalloendopeptidase"
                     /protein_id="HDL5416680.1"
                     /translation="MKHTFKLSLLATSIAISLSPTLLASIVRGDVDYQYFRDLAENKG
                     KFFVGATNIPVIDKTGKNIGTFLQVTPTKQVEVESNISPKPNVSLSECFDNESLPGCY
                     EFLYGGGDEDSNDLPVFETVTGETMSIPMIDFSSITRQTGIATLVNPQYVISVNHNQG
                     YRDIQFGDSSSEKADDHHYNYSVVRRNNYMPDPNKERTDLGKGIEKRERNDEGEKLIL
                     DGSGNPTPRWDYHAPRLSKLVTEVAPANEIERTTENVQDFYSVFSDPFIFPMFIRAGS
                     GRQAVVNNERDRLNNGRIEVGNGPFLTGGSVLPVTNGDPSVPGSDFNSRILVAKTENN
                     TINDVFKDHGYGPLTTLGLPGDSGSALFGYDVRTKKWVVLGVYSDYFSENNTLGGDVY
                     KSYWNYHHPHYVRALEKENNAGAINANGARLTWTPSGNTSSIVGGNAPLTVNLADTSL
                     PTLQGHNGNTGDNPWNPQLQHGKTFHILGENNTLSLTENINQGAGAIHFHGNTTVEGM
                     KAGITWLGAGVDIDKDKNVIWKISNPAGDRLSKIGQGTLTINGKGENKGSVSVGDGTV
                     ILNQQADENNKKSAFSELGIVSGRPTVILNSSDQMDPNNIYFGYRGGRLDVNGNDLTF
                     RRIQNSDEGAMVVNHNTAQTANITLTGIVSPTIDQVKVQAITSPDQVSRHLDKDIFTY
                     QRFPHLPTNFIRLKKPLSVAEITAIFNARKVFIDLDFATGLIRENEYFEVLKVTDESA
                     AKQQILAEKIKAAEGTVQGFNGYFGETDPSKTNGRLNITMNSNCSEPTKLRNATTKTT
                     KENRSFTFLILMVF"
     gene            complement(38168..39934)
                     /gene="aspS"
                     /locus_tag="PXC99_000183"
     CDS             complement(38168..39934)
                     /gene="aspS"
                     /locus_tag="PXC99_000183"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HDL5416681.1"
                     /translation="MMRSHYCGALNRSHLGQTVTLSGWVHRVRNLGRFIFMQIRDREG
                     IVQVFFDEKDEALFKQASALRSEACVQIQGEVIARDESQINKEMATGEIEVLVKNLVV
                     YNNAEVLPLDFNQNNTEEQRLKYRYLDLRRPEMAEKLKTRAKITSFVRRFMDDNGFLD
                     IETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFR
                     DEDLRADRQPEFTQIDVETSFMTAEEVRALMEAMIHGLWKETLGVDLGKFPMMTWNEA
                     MTRFGSDKPDLRNPLEMVDVADILKSVDFKVFSGPANDPKGRVVALRVPNGAALTRKN
                     IDDYTQFVGIYGAKGLAWLKVNDMNTGLEGIQSPVAKFLNEEVLKALVKRLNLQKDDI
                     VFFGADNWHVATNAIGALRLKVGNDLGLTDTTAWKPLWVIDFPMFERDDEGNLSAMHH
                     PFTSPKELSPEELVQDPENAVANAYDMVINGYEVGGGSVRIFSQQMQQTVFSILGINE
                     EEQKEKFGFLLDALKFGTPPHAGLAFGLDRLTMLITGTDNIRDVIAFPKTTAAACLMT
                     EAPSYANPKALEELAIRTIPQE"
     gene            complement(40040..40951)
                     /locus_tag="PXC99_000184"
     CDS             complement(40040..40951)
                     /locus_tag="PXC99_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine exporter LysO family protein"
                     /protein_id="HDL5416682.1"
                     /translation="MLYGLAIVLIPLFLGYLITLKNHRHMAIVNRVVSLCLYLILLVM
                     GISLGQIDNILTELPQIGGTAFSLVVILLLSNIIGLVIYDKLQPMKRDKVNQDQLPSR
                     LHLLIDSFKLIGITLLGGIIGYFTKGVVDFPLHASTYVLEVMIFGVGIQLRNSGIPLR
                     EVFFNKRGIYTSIVMVASSLIGGVISAFTLDLSLAKGLTFASAFGWYSLSSVLVNDAW
                     GPIYGSIAFFNDISREILCLFLVPLFMRQFPSTAVGIGGATSLDCMLPIIQKSGGIQI
                     VPLAISFGFIVNLAAPLLLAVFIGLEG"
     gene            41074..42156
                     /gene="dinB"
                     /locus_tag="PXC99_000185"
     CDS             41074..42156
                     /gene="dinB"
                     /locus_tag="PXC99_000185"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HDL5416683.1"
                     /translation="MSIQAKHKRKIIHIDMDCFYAAVEMRENPALVGKPVAVGGNANQ
                     RGVLTTCNYEARKFGLHSAMPTATALKKCPNLILLPVNMALYKSVSAQIHEIFHRYTD
                     VIEALSLDEAYLDVTECERYFGSATWIAQAIRNDIFNELHLTASAGVAPLKFLAKITS
                     DQNKPNGQCVITPDDVQNFVKNLPLAKIPGVGKVTNEKLKQLGFETCGDIQQAEKAVI
                     YRAFGKFGQRLWDFSHGIDERAVEPYRERKSLAVENTLLHDISTLEQAEKIVADLFDK
                     LVFRLQRNWGDTPLTEFKKLGIKLKFDDFSQTTLERTTDGFAYERFGELLQQIFTRRK
                     ERKVRLIGLSVHFPEKKVNKQLNLWE"
     gene            42244..43113
                     /gene="htpX"
                     /locus_tag="PXC99_000186"
     CDS             42244..43113
                     /gene="htpX"
                     /locus_tag="PXC99_000186"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HDL5416684.1"
                     /translation="MAKRVILFLLTNLAITFVLGIVLNLIFKVTGIQGQSTAGILVLS
                     LVFGFSGSLISLFMSKSMALRSVGAEVITQPRNEAEQWLFNTVQRQAQQANIPMPDIA
                     IYHSADVNAFATGATKSNSLVAVSTGLLNSMTKDEAEAVVAHEVAHIANGDMVTMTLL
                     QGVLNTFVIFLARIISTMAASSRDENGNSSTNTLVFWVVDIVLQMVFGVLATMIAMWF
                     SRQREFRADAGSAQLVGKEKMIAALQRLQRVHEPQEMEGSLAAFMINGSRGKELFMSH
                     PPLEKRIEALRNL"
     gene            complement(43167..>43594)
                     /locus_tag="PXC99_000187"
     CDS             complement(43167..>43594)
                     /locus_tag="PXC99_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL5416685.1"
                     /translation="LSGFLSATLLPGNSEIIFTTLASQHLITYGSLSSFSLFNLLLVA
                     TLGNSLGSITTYAIGLLLPRPQNTTNRYSQWALAKSEKYGVLVLLFSWLPIVGDIFCG
                     IAGWLRFSLWQSILFIVIGKLLRYLFLLATLYSVLPHIL"
BASE COUNT        13619 a         8680 c        10034 g        11261 t
ORIGIN      
        1 aataaaaccg aaaaacacta aattcttttg aattctctta ttgaattcat ttggaattca
       61 ctatattatt cgttctgtag ttaaatgatt tacatcattt aagtagtttc taaaactaac
      121 tttcaaggat ctcacaaaat ggcaagaaat aaaagagttc gagatatgag taatttcgaa
      181 attcgtggtg agctgatgaa aatcggtaag tccttatctc agttaggtat tgagaatgga
      241 ttagcaaaaa ccacagttcg taatgcgtta gataagccat atcccaaagg ggagcaaatt
      301 attgcaaaag cgattggtaa aacaccgcag gaaatttggc cctctcgtta cgaataagga
      361 gcttttatga aggaatggtt tttagccaaa gaaatcgcag gattatctgg agttccagaa
      421 ttaccgaata gcgtttcaag attggcaacc aaagaaggat ggcaaaaacg acaaattcaa
      481 ggtgtaagag gtgttactta cgaataccac ctcaccagcc tacccattga aacccaacaa
      541 caacttagac taaacgccgc ccttgcggta ataccgcaag cggcagaact acaacccaaa
      601 cgagacgacc ccgcacttat cgcaaggctc aataatgcca ccgataaagg cagggataaa
      661 gcaaaaggca aggcagaagc ctgtatgcag ttgcaagcct ttctcgacca agggtttagt
      721 tatacgcagg cagaagcggg agcggcaacc gctaaaaatg tgtcgcaagg ttctttaaaa
      781 aattggtact acaaagtgaa aggtcacccc gtccatttat ggcaggcgat cttaatttcc
      841 gaaagcggta ggagtaaaaa gccgcagctg aaagccaaga ttactgaaga agcgtgggac
      901 tgctttttgg cggattacct ccgccctgaa aagccggatt tacgggcaag ttaccgccga
      961 acccaagcca tcgccaagca atacggctgg caaatagcaa gtttacagac tttccaacgc
     1021 cgagtgttgg cggaagtgcc ttacgaggtg attttgctca aacgggaagg agcaaatgcg
     1081 gttgccaagt tagtgccggc actacaacgc acggtgaaag atattctcgc aggagaatgg
     1141 attaacggcg atggctatca acacaatgtg tttgtgaaat ggcacaccgg cgagattgtc
     1201 cgccctaaaa cgtggttttg gcaagatgtt cgcacccgca agattttagg ttatcgaaca
     1261 tcgatttcgg agaatactga cagcatacgc cacgcattaa tggatgtgat ttttaacgta
     1321 ggcataccga aaacgctcac gctggataac acccgagcag cagcgaataa ggcaatgacc
     1381 ggtggtattg aaaaccgcta ccgctttaaa cataccgagt tagacccgaa aggcattatg
     1441 ccgattttag ggattgatgt gcattttacc tcaattcttt atggtgaagg acacgggcaa
     1501 gccaagccga ttgaacgtgc tttcgggcga ggcggaattg gcgagaaaat agataaacgc
     1561 cctgaattaa gtggtttcta tacgggcaga aatgcacaag aaacccctga taactataac
     1621 ggcggtaaag acggtgtgga ttacaacaca ttcttgaaag ccatagcagc agggatagaa
     1681 gagtacaact ctcaaaccga acgccatacc gaaatgtgcc gaggagaatt gagttttaac
     1741 caagtttggg agcgggatta ccacccaagc aacgtaagac aagccagccc tgaacagttg
     1801 cggttactgt tcttacaggc agaaacggtc agcattaaac gcaacggcag ttttacgctg
     1861 aaagcagccg gcaaacttta cggcttaact aacgtttact gggcagaaag cctgataggg
     1921 ataacggata agaaagtagt ggcacggttc gaccccgatg acttacacgg caacgtgtat
     1981 gtgtacaacc tagaggggca attcttagcc gaagcggttt gccgagaggc gaaaggattt
     2041 ggtgatacca gtgcaagccg tgagcaaggt cgcttatatc agaaagtagt gaaaagtgcc
     2101 aaagctcaag ccgaagccct tgaattactg gaagctcacg aactggcaag cctcgcccca
     2161 caagtggacg tgcctgagcc gatagagaag aaggtaaaag aggtgctggt gaaagaagat
     2221 tttatcgtgg atttcaacac tgtgcgtaaa gcaacggtgg tggaagaaac cgaagagatc
     2281 agtatttttg atgaagtgtt actgaaacaa gagaaacaac ttcgcatagt ggaataacta
     2341 gcggtcagtt tttgcaaaaa atttgcaaat ttttctaaaa aaacgaccgc ttgaaatgag
     2401 atttaaacag ggtttaaacg cctttaagga gtaaaaaatg acattaacag ggcaagctta
     2461 ccgagtgatt ttcaaggaac tcaaagagca acaagagagt gaatttgaac aggctttcaa
     2521 gaaagggatt gccaaaattc agcagaatca aactcaggaa tccattctgg taaaccgtga
     2581 tatgtttcaa gctgaaaagc taacactgct ttcacaaaag ttggaagcgg ttgagcaatt
     2641 acttcgcctt gaattaaatc agccgaattt tcaagcaaaa cttgaagact acgctgacgc
     2701 attacgaaca accattttaa gtaaagtagc caaataagag ctttagactc ttgaaggctt
     2761 aacatctgag ccactttttt tactgtcggc attataccgt caagatcatc aatagaagtt
     2821 aaatgatgaa aagaggaatg gtattcagct aaacaaaaat tgattgtact aagtttaaac
     2881 aaagtaatgc aatttttcat cacgatggca tttgctcgtt ttaacttaaa accagagaag
     2941 gttgcacgag cagaatcaag ggctatttga tgaatttcat catctgttaa agaacgaaag
     3001 agcataaaaa cctccaaaca aaaacaggac accattatga cattaatcga ccaaattaaa
     3061 caacacatcg ccgaaagcgg cagttctcag gggaaagttg ccaaagaagc cgggattaat
     3121 gccggggcgt tatcggctta cctgaatgaa aattacaaag gcaataatga agaacttgaa
     3181 gcaaagctga ttgcttattt agagcgtatt gaggcgaaga aaagagagtt tgtcgaagct
     3241 ccgagtttta ttgaaaccaa aaccgcaaac caaattttcg gttcgttacg atttgctcaa
     3301 aatactggcg tgcttgccat tattcacggt gcgagtggcg tgggtaaaac acaagcggct
     3361 agagagtatc gtaaacgcta tgcgaatgta tggttggtta ccgcaagccc ttctcgttcc
     3421 tcattaagtg aggtgttata tgaaattgct cttgaacttg gaatgaacga tgcaccacgc
     3481 cgcaaaggga cattggctcg tttaattgtt cgcaaaatga aaggcacagc aggtttatta
     3541 attattgatg aagcagacca tttaccttac gaagccttag aagaattaag gctgttacaa
     3601 gaagaagtag tgaatgaaag tgacatcgga gctggtgttg gcttagtgct gattggcaat
     3661 gacaaagtct acacccgaat gaaaggcgga attaaccctg ctcacgaata tgggcgactt
     3721 tggtcacgca gtgccaaacg caccagtatt cagaaaacca aaaaagaaga tacccaagcg
     3781 gtagccaaag cgtgggggtt gagtgaaaac caagaagcac tcaaggtaat gcaagccatt
     3841 actgaaactg gtggcggatt acggattctg acacacacct tacgattagc agcgatggta
     3901 gcaaaagacc gaatgattcc cttaactgcc gatttaattc agctcgcacg taaagattta
     3961 ctctcaacag gagattaaca atgagaaccc caaaacccaa acacagtttt aaccgcacca
     4021 accaagcagc gtgccgtttt ttaaaacaaa cccaaaaggc aattatccgc ttaaacagtc
     4081 ttggctttac ggtgctgaat attgatttta cccgtattaa gccccgcatt gaggtggaaa
     4141 tcggcaataa caagcacatt gctcaaggct tgatttatga gggtaaagcc taccgctaca
     4201 gcttcggtaa aagcgaagat ttaggcagat gggaaggcta ctacaccatg ctggaaggta
     4261 tcagagtgtg gtggcgacaa gcagcaattc actaggagaa aaacagatga aaaccttagc
     4321 actattaacc gcccttttag ggcttgtagg gtgtgattta gtccaaagca aacaagctaa
     4381 aaattacatc ggcaacaatt taactgaaat ctgtatagat aacgtggtgt acctgattta
     4441 ttccggtgat aaaaaaggcg gaattacccc gaaagtaaat aaagattttt acccttatac
     4501 ctgtacaaac aaagaggaaa gacaaaatgg caaaacccga tgaaacaccc attacaaaag
     4561 cagaatgtca atctcagctt gcagagttgg gggtgcaata taaaaaactg ccaatggcaa
     4621 ttacaagaca tatttgtaat gccacaacca atatacacgg caaagttata aaggtcagtg
     4681 tggtagagag agttggatat ggcgtccaga ttaccgcaca aggtaacgag aaatcttgct
     4741 tagtaaccta tgaagcaatg ttaggtatgg cagaagcaat gggattattt gatgaagtta
     4801 aggagcaaaa taatgactaa aaaaacaacc agagtaaaaa gtgcaaccca aagtgcgatt
     4861 tatcaaagcc gagatgaagt gcaagtggct ataaaaatca ttggtgataa acagcgtgaa
     4921 ttgcaacgtt tagctacggc aatgaatgat gaattagctg ctattagtgc cagttatgct
     4981 caacataacc gctaccaaca ttatgccgag aaagcggctg aagcagaacg caaaggcaac
     5041 tataaggaag ctcaagacca ttgggaagtt gcaaaattat cagcaaaaaa gaccgctaac
     5101 cgagactggg cggaacaacg agcggaattt tgtaaacgta tgcacaataa accgttttag
     5161 ggggaagtga tgacagaaac cgtaaaagca caacttaaca gccaattaaa tgaggcaatt
     5221 atccagttga tacaagctca aaagtattta aaccaagatg atgccattcg cagtggagtg
     5281 tatatcggta cggtgcagga tttattgcca aaggtgcatt taaagttatt aacggcaaat
     5341 cgtaaacatt gatagagatg aggtaaaaat ggctattaca gaagaacaat ggaaagaaat
     5401 taagcaaaag ctagatagta tcatagggag agttaaattt agatacaaag agcatttact
     5461 cacggtagat gttgtacaaa ttaagcgatc tttaaaattg gctgtgtatg ttgatgggga
     5521 aattgatgga gcttggacaa aagaaggaca cgaaattcgc ccttatttag aagaagtttg
     5581 gtatcgcaaa gaacgccctt tttttaatgc taaggagaag aaagagtata gaggtttaat
     5641 gagcaaaaaa aaactgaatg aaaaaatagt aacctactca cctatgtttc catcaccaac
     5701 tgcactgact cgtcaatata agaaactaga tggcttagag ttgattgaag tgatttaaaa
     5761 cccatttaca gcccatttaa ccccgagtta tttaaaggac aacaaaatga ataaaaacga
     5821 attttttaag aaataccacc tagagggttc actagctatt ttggatttgg atgcaaatga
     5881 cgatcaaagc caattctgtt accaagcatt gttggagtat agagaactcc cgttagacac
     5941 atttcttgca gagtactcag atgatgagga tatgacagag tcagagttta ttgagttaat
     6001 gcttgatgaa ttagagtgga ttatccgcag agctaagaat gctaaacggt ttgttaaaaa
     6061 acgacaaaaa acgatgaggg aggaaattat gtaacagctc aacccaacca acgccacatc
     6121 atccgtctag ctgagaaaca ggtgtggcgt ttgttttaag tgggcaatca aaagcgataa
     6181 cgtttttaat tgtttattta tcggagtaac aaatgacaga caaagccaag ctaatccagc
     6241 ttatccatat tgccaagtcg caactagcaa tggacgattt aagctaccgt gaaatgctga
     6301 aacggctcac caataaaacc agctcgacca aatgcacggt ggtcgagttg cacaaagtct
     6361 tacacgaact gcaaaccaaa ggagcaaaag taaaatattt tgccaaacgc agcaaaaaac
     6421 cgaccgctta cagcccggca acaggggaaa cagcggtaaa aagccaaatt gctcataaaa
     6481 tccgagcggt atggataaca atgggcaaac acggattttt aaacgaccca agcgaaaaag
     6541 cattaaatgc ttatatgcgt aaggttatca ataataaaac tagaccaaca atattattaa
     6601 atgtctctgc attagaggct ggagatgcaa gttatatgct tgaaatcctc aaaaaatggc
     6661 ataaacgtgt gatgattaaa gccctaagca aaagttgcac agttgatcca aagataagct
     6721 acgatgaatt agtggagtgg tacaatgaag ttatgtagat gcccgatttg ccacagtgat
     6781 atacacctag aagctctcgt agaagatgaa gccgggcgtg aactactcgg caaaatcagc
     6841 caattaacac acggtgttgc tcaaccgatg gttgcttatt taggcttatt taaaccgcaa
     6901 aaaagtaacc ttaataactc aagagccttg aaaatactca atgatgtatt agcactctac
     6961 ccttgctcat tgctactggc tcaagcccta tctgaaacgg tagtaagcat acgcaaaaaa
     7021 cgtcagcaag caatggaaaa cgggcagaaa attgaaccgc taccgaacca taactattta
     7081 aaatcggtgt atgaaacgca aaaagtccat tttgctgtgg tgagaaccgg caaaaccgaa
     7141 cgcgaaacaa tgaaagccga actggaaaaa acacgcaatg cgattgccta tgtgcaacgg
     7201 tttgttgatt taggacgtga agaggttgtt aaaaatagcc ctgagtatca gatttggtta
     7261 gctcataaac ccaaataaca caagccacca aaaggtggct ttttaacttt ttgaaagtgc
     7321 gataaaacct gatttaaaca ggctttaaac gggttttaag attgagttta aaaaaatatt
     7381 tcacaaaata agaatggttt tttatacaat aaccgaaacg gtttttggat aggaaataga
     7441 caatggaatt agtggatatt tttgaagaaa aagccccgga agtgttaacc gatttagcca
     7501 aacatattga agtcgcatta gaagaaaaat gccaatttag ccccgaaaag gcaaagcaaa
     7561 tcggtattga tattgcccaa caaatggctc aaaactgggg tggcgaggta atttatattc
     7621 ctcgcaattt gttgatggct cttaatgagc gagatatgaa aatttacgaa gagtttaacg
     7681 gtaacaatca ccgtgaattg gctcgtaagt acaatgtatc aatgcagtgg gtatataaaa
     7741 ttgtgaagaa agtccataag gacgaagttg cccgcaggca gatgagtatg tttgagatgt
     7801 aaatcatttt ttcccagccc tgatcatttt cagggctttt tgtgtattaa aagaacgcag
     7861 tctttaaacc cgtttaaaat caatttttca gcaaattctt taaactcctt ttaaagcaat
     7921 tttaatagga gtgtgctatg tctcaaaatc ttacctttcg ccaaattttt gaccgtttaa
     7981 tcggacacga gggcggctat gtcaatcacc cacaagaccc gggcggagaa acccactggg
     8041 gaattaccaa acgtaccgcg gttgctaatg gttatatgta tgcaatgaag aatatgaccc
     8101 gtgagcaagc ctaccaaatc tacgaaaaag ccttctggca acgttatcgt tgtgcagagc
     8161 ttaagccagc agttgcttat caatttttcg acgcagtggt taatcacggt tttggtaatg
     8221 ctagtcgtat gttacagcgt gcagtaggcg tagcggatga tggcattatt ggcaatatta
     8281 ccctgcaggc aattaatgca aaatctgaaa gcgatctctt aatgctattt aatgccgaac
     8341 gtctgaagtt ttacacaaaa ttacgcaact tccccacttt tggtaagggt tgggtcaatc
     8401 gtgtggcagg caatttagaa tacgcagcac aagataatga ggtttaaaaa tggcaaaact
     8461 atttaaagaa ctactctcaa ccaatggcac attatccacc actagcaccg tgcagttttt
     8521 tggcacattg tgtgtatttg gtttaatggt ttatgcagta attacccaac aaccttatgc
     8581 cgaaagccta ttaaataatg tgttgattta tctttttggg gcaactaccg ctaagggtgt
     8641 agtaaccagc tatcaagcca aaattaaagg gggtatccat aaacaacaaa gtacatttaa
     8701 agaggaggag ggatgttaat gcaacaaatt ttaggcgtga ttggcgtcat cgcagcaata
     8761 ttgtcttatg ctttgtttaa aagctggcaa ctaaaacgtg agcgtaaaaa gaatgccata
     8821 ttacaagctg aaaaacagca acaagcggtt gaaattgagc aaaaaaaagc agaggtaaaa
     8881 tatgtgtata tatcaaagaa aaacaatgaa aaagttactc gcagctctgc tagcgatatt
     8941 gatgacaagt tgcagcaaca cggttacttc cgtgacaaca acaggttgca cggcgttcag
     9001 tctgatttat ccgaaccgtg cggatacgct ggaaacgaaa cgtcagattc ttgctcataa
     9061 tctgactttt gaggaaattt gccaaaatga aatacattaa aaaattacgt aaacgctggc
     9121 aaatttggcg ttttttaaaa aatcatcctg aggttgcaca acgccgagat ttattagcga
     9181 ttgccattaa acagggcgta gaaaaccctg tagggcgtgc aagacggagg gagccataat
     9241 ggatttattt acagtctttt gggagtctat ccgtgctaac tttggtttta tttctgcgtt
     9301 actcaccatt gttgttacgg cattttggct caagctagat agcaaatacg ccaagaaaaa
     9361 tgatcttggt gaattgctgg aaattgccaa aagccacgat aaccgcttaa ccaccttaga
     9421 aaccaaggta gaaaacctgc caagtgcggt ggacgtggaa aagctgaaaa ccttagtcac
     9481 tgatgtaaaa ggcgatacca aagccacctc aaagcaggtg gatagtatca gccaccaact
     9541 cggcttgtta ttagaagcaa aattaaagga atgatatgtc gttaagagat ttactcactc
     9601 aagaccaacg gctggtgatt ttacgctcat tagcggaagc cggctatgat gccaatgagt
     9661 caattattag tgattgccta gatttatacg gtcacgatat tagccgtgat ttagttcgca
     9721 cccatttaag ttggcttgaa gagcaaggct tacttacctt agaacgtttg cgagatggct
     9781 atatggtggc aagcattacc cagcgtggct tagatgttgc tcaagggcgt gttgtggtaa
     9841 gtggcgttaa acgccctcgc cctaaaattt aaacggtatt taaggagcgt ttaaatgagc
     9901 gagaaaaata ctcgtggtcg agcatcaaaa gtcgatttac tgccgccgaa tattaaaacc
     9961 caactggcga tgatgttgcg tgataagcag tactctcagt cacaaatttt agaagaaatt
    10021 aatgacttaa ttcgggattg tggcttgcct gatgaaatgc tgttaagcaa aaccggatta
    10081 aaccgctacg caagccgtat ggaacgctta ggggcaaaaa tccgtaatgc ccgggaagtt
    10141 gccgaaattt ggactaagca attcggcgaa atgccacaaa ccgatattgg caaaacccta
    10201 atggaaatgg tcaagcaaat tgcctttgaa acctcattga aattaggcga acaagaaggc
    10261 ggtattgagc caaaacagct tgctttgctc tcgtctgcta ttcaacgttt agaacaagcc
    10321 gaaagtttga gttttaaacg ggaacaggca atccgtaaag aggtcgcaca acaagccgct
    10381 gaaaccgctg aaaaagtggt ggtgcaagcg ggtttatccg ctgaaaccgt ccgtacgatt
    10441 aaagagcaaa ttttaggaat tgcataatgg cactactcaa taacagaccg ctgaatgaat
    10501 tagcccctga atgccgttcg tttttagaga gcattcacgc ttttaatcct aacgaactgt
    10561 tattgggcta tcaaaagcgg tggattgcgg acgacagcca actcaaaatt gccgaaaaaa
    10621 cccgccgttg cggtttaacg tgggcagaag cagcagataa cgccttaatc gcaagcaccc
    10681 gcaaatcaga cggtggctct gatgtatttt acattggctc aaataaagag atggcacgtg
    10741 aatatatcga tgctgtcgca atgtgggcaa aagcctttaa tcgtgtggct ggagaaatcc
    10801 aagaagagat ctttgaagac gaagataaag acatcttaac ctatgtaatc tacttctcat
    10861 cgggttttaa ggtcaaggca ttatccagta atccgaaaaa cctgcgtggt atgcagggcg
    10921 tggtggtgat tgatgaggcg gcattccacg aatacttagc ggaagtcttg aaggcggcgt
    10981 tagctctcac aatgtggggg gcgaaagtcc gtattatttc gacccacaac ggctcggaaa
    11041 atctgtttaa tgaactgatt accgatagcc gtgccggccg caaacgctac tctgtgcata
    11101 cgattacgat tgaagatgcc tgccgtgatg ggctatatca acgtatctgc caagtagtga
    11161 cgaaaaaaac gtggtcaccg gaagcagaaa aagagtggat tgaaaaccta ctcaacgaca
    11221 ccgccagcga agaagacgca ttggaagaat acttctgcgt accgaagttc ggctcaggct
    11281 tatggctctc tcgtgctttg attgaacggc agatgagcga agccacgcct gttatccgct
    11341 ttacggcaaa agatggtttc agccttgtgg ctgaaccgac acgctatgcg gagattgccg
    11401 aatggtgtga attagaactt gagccgatat tggcaaccct taaccctgat ttgttgcatt
    11461 ttatgggcga agactttgca cgcagcggcg atatgacctc tctggtggtg cttgctcagc
    11521 aacaaaacct tgttcgtaaa gtcgccttta ttgttgagct tggcaatatg ccctacaagc
    11581 aacaagagca aatcgtgatg tttatgctta aacgcttacc gcattttgcc ggtggggctt
    11641 ttgacgcccg aggcaatggt ggctatttag ccgaagctgc acgagatgaa tttagcacct
    11701 tgattgactg cgtgcagtta tcggaaaaat ggtatcggga acacaccgcc ccctttaaag
    11761 cggcattgga agacggcgag ctggaagcta ttccaaaaga tgcggatatt ttggctgatt
    11821 tgcgttcatt tcaggtggtg aaaggcgtac cacgcatacc ggataaacgc actaaaagtg
    11881 cagatgggaa aagcaaacga cacggtgata ccgcaatttc tttgctgttg gctcattatg
    11941 ccagccgaca attagtgcaa atgccagttg agccggtatc acgccgtcca cgccatagcc
    12001 aacaattaac agaaggatat taacaaatga gatatgtacc actttgttta atgatgtgtg
    12061 cctcattcta cctatttatt aacaacattg acggctgggg ttggggaatt cttttatctt
    12121 ttattttagc gagtgcagct tatggcaaag aagaataatt taattagtga aattgccacc
    12181 cgtgccagaa gtattgatta ctgggcattt ggctattatc tgccgaaccc tgacccgatt
    12241 ttaaaacgaa tggggaaaga tatttccgtt taccgtgagt tgttatcaga cgggcaagtt
    12301 cgctcaggcg tacgccgtcg aaaagcggcg attaaaggct tagagtggcg aattaccacc
    12361 actaacaatg agaaagtgga cgagcagatt tatcaaatat ttaaccgctt gccgatgaat
    12421 aacctgatta ccgaaatgct caatgcagca ctctatggct accatatcag cgaggttatt
    12481 tgggcaaaag agggtgagtt atttgtgcca acagaaatca ttggtaaaaa gcctgaatgg
    12541 tttatgtttg acgacgaaaa cctactgcgt ttccgtacca aagaaaactg ggcggacggc
    12601 gaattattac cagatgataa gttcttgctt actacgcaag aagccaccca agataatccc
    12661 tacggtttag gcgatttatc cctctgcttt tgggcggcga cctttaaaaa aggcggtttc
    12721 aaatactggt tggaatttac cgaaaaatac ggctcaccgt ggttgattgg caaacaccct
    12781 cgccaagctc acaatacaga taaagagcga ctagctgatg ccctagaggg aatgattagc
    12841 tcagcgattg cggttatccc tgaagatagt tcggtcgaaa tcaaagatgc agcgggcaaa
    12901 tctgccagca ccgatgcctt tgaaaagttc ctcaattttt gcaaggcaga gatcaatatc
    12961 gccctacttg ggcaaaacca aaccaccgag caagaaagca accgtgccag tgcacaagta
    13021 ggcttggaag ttatggaaga tattcgctcg gacgaccaag cgatgattga agccaccttc
    13081 aacaccttgt tgcagtggat tgtgaaatat aacttcaatg tggaacaact gccgaagttt
    13141 gaattttacg agcaagaagc catcaacacc gaccaagttg aacgagacag taaactccac
    13201 gcaatgggcg tgcgtttttc caaagcctac tttgagcgtg aatatggctt tgaggcgggt
    13261 gatattgagg tgcaagcggt cgaaaaagcg gaaaaatctg caaataccac agaatttagc
    13321 gaaggacaac gccgaaccca agtgccaatg cctgtgccaa ttttggaaca gctagaacac
    13381 gagggagaag caatggtgga cgattggcta caaggggtga gagataaact cgctcaagca
    13441 gatagtctgg aggatttcca aagtcagcta gatagcctta tccctgaatt aagctttgcc
    13501 gaatatggcg agctgttggc gttaggctca acggtggcag agcttgcagg cagacaatcg
    13561 gtaaacgatg aaattaaggc aaaacgcaat gcgtaaattt acctttaaac agcaagccca
    13621 atattttgag aaaaaactca atctccgcac gaatagctac cttgatattc tgggcgaaga
    13681 gcacgactat tttttcgtgg tggctggggc gaatcgtaat gaagtgttga gtgagtttcg
    13741 caaggcggtg gatgaggcta ttcacaacgg cgaaacctta gagaactttc gcaagcggtt
    13801 tgatgaggtt gtggcaaaaa caggctggga gtacaacggc ggacgaaatt ggcgaacacg
    13861 gattatttac gataccaatg tttacggggc gtataaccgt ggacgtttgc aacaacattt
    13921 agagcttgcg gaggatatgc cttattggga atatcaacac aacgacaacg cccaccctcg
    13981 cccacagcac gtggcgtggg acggcttggt gctgcgttat gacgatccgt tttggaaata
    14041 tcactatcca ataaaagcct acggttgcca ctgcaccgtg caagcgttag atgattttga
    14101 cctcaagcac gatggtaaaa ccgtcagccc accacctgaa attgagtttg aacaaaaaac
    14161 ggtaggcgtg cggacaggca attcacgagt cgtaactgtg ccgaaagggg ttgatgtggg
    14221 ttttacaccg cataattttg ataatctcaa agccgggaga gcagcaaatg tagataagtt
    14281 gctaatgcaa aaaatggtta ccgccgatcc tatatttgcc tccaaagcag tcagtgattt
    14341 attggcaaaa gagccggttg caaagttaca taaccaagcc tttaaaaatt gggtaaatga
    14401 tgttgccaat gctaaaggaa gtgcattatc ccaagtagag aatatgcagt tgttaggggt
    14461 actacctgtt gcggtgattg aacggttaca gcagatcaat ttagctccgc aatctgcaat
    14521 tattgcaata acaaaaggcg atatggtaca cgctctacga gagctaaaac aaaataccgg
    14581 tattgccgta ccgttggaat tttgggaaaa gttgcctgca aagttacaat acccaaatgc
    14641 catcttgttg gaaaaacaac aagcagaaac tacattgctc tttatctatg acgtagctca
    14701 aaccaaaatt gccgtaaaag tcaattatga tgcaacttta caagatagac acggagcaaa
    14761 aggacggcag aaagtcttac tgaatcgagc ggttacaggt agtttattcc aagatacaac
    14821 tggattgaaa agttcaaagt atgaagtgct attgggagaa atgtagcggc gaaggactcg
    14881 aaccttataa tgtaggttaa acctacaacc tttaccaatt aggaaactac cgctacattg
    14941 tgtaaattca ctatacccct aaattatttt ttaatcaata ggagaaacaa aatggcagaa
    15001 aaacaacttt cctttaaagt agccgaaata gtgccaatgt cagctattaa cactatgcgg
    15061 cacttaatta gtttggcatt acaagcgaat tatgagagag aaaaatctcg tgcttgataa
    15121 tttcaatggc ttgtagttcg ggaactatat tatctgaaac aagccattgt tttgttgatg
    15181 tcagacattt agcgatgaaa tccataatta aaccattagc agtagctcgt tgttccggag
    15241 taagttgtaa ccacgacgcc tctgtttgtt ggtctaatgt ataaagaaac ataacggctt
    15301 ctttttctga taatgggtca agtggtaatt tttcagcttt tgtgactaac cattgacggg
    15361 aaagcaataa atcataaacc agttctattg cttgttctgc atttaccatc atattctaat
    15421 tccttaatat atcagggcaa cattacccaa tctatatttt actgagattt gcttaatgat
    15481 caaaatcacc ctcaacaaca cccaagcggt caaatcgtta caacaaattg caaatcagct
    15541 ggaacaacct cgccgactgt atggcatttt aggggaaacc ctaaagaaaa ttcacactgc
    15601 acgctttaaa gcggaacaag accccgatgg caacaattgg aaaccgttag ccagtagcac
    15661 gcttgcttta aaacgtaaac gaggtaagtc cactaaaatc ttacggcaag acggctacct
    15721 tgccgataaa acggcttaca atgttacaag tgataatgtt gagtttggct cgcaggaagt
    15781 gtatgcacgg ttgcatcaat tcggcggtaa agccggacga ggcaaaaaag tgactgtacc
    15841 ggctcgcccg tggttaggcg taggcgataa agatgagcag ttacttttac gcaaagctga
    15901 gtggcattta gggcaaatta tcggtcgtat gggaaaataa ccgcttaaaa tcaaatttaa
    15961 cgcataaaaa cgcctctgtg cgtttttatt ttttattcgc ctgattattc gactcaaaaa
    16021 atttaaacgc tgttaaacgc atttaaacgg tatttaaacg gtattgccga ttgtgataaa
    16081 tcctctttat taaaacaccc tcgaaaaatc tttaaaccag tttaaaagct aatttctctc
    16141 caaatcctta ttattgcccc atcacggagg caatatgacc caaattgaaa tttttaaagc
    16201 cggtaagcgt tatgacgcca acggcacgtt aattgacatt acccctgaaa tgttgcaaca
    16261 gaccgttgct gcctataacc ccgaatttca cgaagctccg ctggtgatcg gacacccgaa
    16321 atccaacaac cctgcgtggg ggtgggtaaa agccctttcc cttgagggcg atgtactaaa
    16381 agcagaagta gatcagctag acgctgagtt ttcagaaatg gtggcaagcg gcaaattcaa
    16441 aaaagtctcg gctgcttttt acttacctga tagcccgaat aacccacata aaggcgtgtt
    16501 atcgctacgc cacgtggggt ttttaggggc aatgccaccg gcggttaaag gcttaaagca
    16561 ggtggaattt gcagaagatg atgattttgt cgtcttttct gaatgggggg ttgcaagtct
    16621 atttagtcgt tttcgtgatt ggttggtgag tgagttcggg cttgaaaaag ccgataaagc
    16681 tcttccccca cacgaaattg attggctgaa agaagaggca atgcgaagcc aaattagcaa
    16741 acaggtacac gccgaacagg caacacctga accgattttt aatgaacccg cacaaccaga
    16801 aggagaacct gaaatgagtg cagaagagaa ggaagagctt gaacgcttaa aagcggaaaa
    16861 cgagcagttg aaagccgaaa aagcccaagc cgaagcagag aaaatggaag cagagctgga
    16921 agctgaaaaa gctggtaatg cagagttttg tgaaggttta gtcaagcaag gcaaacttgc
    16981 cccggtggca aaagcggcgt ttgtgcaggc tttaaataac ctttcagtat taaaagccgg
    17041 tcgtgagccg gaatttaatg agggcgaaga tgtggtttca cagtttaagt ctgcaatgtc
    17101 gcaatcacca cagattatcc aatttggaga atatgccaca gcagataaag ccaacccaca
    17161 agaagcggaa gcagtggaat atgctgaagg cacagatcca gtttcgattg aagccgacca
    17221 aaaagtgcga gcttatatga aagcccacaa tgtaggctac gctgcggcat ttaatgcgat
    17281 ttatcgctaa tgtttaaccc acaactgaaa aggaatacta atgacaactc ataacttaca
    17341 aaaactgcgt gtacaagacc ccgttttaac cgagctggca caaggctatc acaataacga
    17401 gctggttgcc gagaccttaa tgccgactgt cgaaatcgaa aaggaagcag gcaaaatccc
    17461 aactttcggg cgtttagctt tccgattgcc ttctaccgtg cgtaacttgc gtggttcatc
    17521 taaccgttta gatccagaag atattggggc gattgatgtg gcgttagaag aacacgatgt
    17581 ggaatatgcc attgattatc gtgaagagaa cgaagccatt ttttctttac gtcaatttgc
    17641 cttaaatacc acccaagatg tgattgcgtt aggtcgtgaa aaagcggttg caaccctcgc
    17701 cttagatgaa agccgttatg aaacagacaa taaagtcacg ctgtccggca ccagtcaatt
    17761 cagccataaa gatgctgatg tgtttaaggt atttgatacc gctattcgtg ccgtgaagcg
    17821 ggctatcggt cgtaaaccga atgtgtgtgt gatttccggt gatgtgtggg cagcgttaaa
    17881 agaacatccg gcagtggttg aaaagctcaa atacagtcaa gtagcgattg ttacccctga
    17941 ggtgtttgcc aaactgatcg gcattgagac cgtaaaaatc ggtgaagcgg tgtatgaaga
    18001 aagcggtcag ctcaaagata tttggagcaa agatattgtg gtggcgtatg ttgctcctcg
    18061 ttcgaccgga ggcaaaggca cggtttacga gccgtcttat ggttacacgg ttcgccgtca
    18121 aaaaggctta tttgttgata cttataaaga gagtggcggc aaaattgaag tggtacgcac
    18181 gaccgatatt cacaaacctc atttagtggg tgcggcagca ggctatttaa ttaaagctgc
    18241 cgtataagcc acataccata gggtgcgttt actaacgcac cattatctca aacacattac
    18301 atagaggaaa aaacgatggc taaatttatt gttttacata ccccaatttt acacgatggc
    18361 aaacgctatg aggtgggggc agaaattgaa ctcaccgctg aacaagctga gaacaatgcg
    18421 atcaacttaa aagcggtaga agctgttcca aaaccaccta aaaatgcctc aaaacctgaa
    18481 gatgagccaa aacccgaagg tgaacctaag cctgaagatg cagtgacgga agatgatgtg
    18541 aagctggctg aagcaaaaat tgcagaagca gagcaaccaa aagggaataa aaaataatgt
    18601 atgtgcagat tgatgagcta ctcacggcgt ttagtcgcaa gattgtggtg cagctcagta
    18661 atgatgaacc gacagcgacc gagcctgatt taaagatgct tgaaacggca gttaaagtgg
    18721 caaatgagcg aattgatgca gcgttacgct ctcgctatac cttgccgctg gctgatgtgc
    18781 ctacgcttat taatcagcac gcattaaccc ttgcccgtta ttggctttat gcccgccgtc
    18841 ctgaaaccaa aatgccggac accgtgaagg aaacctacca acaagcggtg aaagagttgg
    18901 aacagattgc aacaggcaaa ctgcatttag gcattgctga aagcagtcaa attttagaag
    18961 acgatgtttt agccgataac agtgaatatg aagttcgggc gaacgctcgc attgatacca
    19021 gtcgttatta aagattatgt cagccacaca accgatttta gaagatattt gccaacactt
    19081 gcggcaagca ttgcccgagt gggaggtgga actcttcccg aatgacccaa gcacctatca
    19141 tctctcgcac attaacggtg cggtgttgat tagctatttg gcaagcaaat ttgagaaacc
    19201 tcgcactaca caagcggtgc tgcaggttcg ccacgttcag attgctttaa cggtgctgac
    19261 ccgtgatttg cataatgatg tcggggcgtt ggatttgctg gataaattgc ggttattggt
    19321 tgtggggttt aagcctcaaa actgcggtga gtgttggttg attgatgaat tttttaatgg
    19381 ctcaagcgaa gaaaccgggc tttggcaata tcagttgatt ttgcaaaccg aaactcagca
    19441 ggtgcaacac caagcggtcg aaaatctgcc aaaatttgta accgctcatc ttcgccgtca
    19501 agaccagcct ggttcgcccg gacttaaaac ttaaatcgta gggtgcgttt gctaacgcac
    19561 catcaacatc acctgatttt acggtgcgtt ggcaaacgca ccctacaagg agaatattat
    19621 gacgtttcac cacggttctg aaaccgaacg agtaaacggt ggctctgtgc cggtatcggt
    19681 ggttgatagt gccattatcg gcattgtcgg tactgcccca atcggcgcag ttaatgaatt
    19741 gaccgtctgt ttaaccaaaa aagattttgc caaattcggc acgattttaa accaaggctt
    19801 caccttacct gatgcctttg atattttagc tcgttacgca gcgggtaaag tgtatgtggt
    19861 gaatgtgctt gacccttccc gccaccgtac taccgtgacc gatgaagtcc tcacactgga
    19921 tcgcaatacg ctgaccgctc aaacagcgaa aaccggcatt attgcggtga cgagagtgaa
    19981 agacggtgca aacgtgctga atgctgatcg gtattcggtc gatctgcaaa ccggcgtggt
    20041 gacctttgtc tctgcaccgt ctgccccgaa aattagctat atctatgctg acccgagcaa
    20101 agtgaccgaa gaggacatta aaggcggggt ggatagctta accggtaaac gcaaaggttt
    20161 tgaactattg cgtgatggtt ttaaccttta cggtgcggat gccaaaatct taatctgtcc
    20221 ggaatttgat aaaaccgcaa gctgtgccgc tgcccttgcc acccttgccg accaactgca
    20281 cgctaaggcg tatattcaac tgccgaaagg gacgagctta tcaaaagcta ttcaaggacg
    20341 tggcccggca gggacgatta acgcctcggc aagcaatgag aacgtacgcc atttcttccc
    20401 gtatgcgttg gggtcaagca atactcttga aagccttgcg acccacgccg ccggtttgcg
    20461 tatgttgatt gatgtggaga agggctactg gttcagcact tccaataaag agctgaaagg
    20521 ggtgatcggg ttggaaattc cgctgacggc tcgggtggac gataagcaaa gcgaaactaa
    20581 tctgctcaat gcggtaggga ttaccaccat tttcaatagt tttggcacag gcttccgctt
    20641 atggggcaac cgttcgtcta acttcccgac tgtgacccat atcagcaact ttgaagtcgc
    20701 ctctcgcaca ggcgatatta ttgatgaaag cattcgccaa gccgaattgc agtttattga
    20761 tttaccgatt gatgatgcgt tgctggatag cttccttgaa accatcgaca ctttcctgcg
    20821 tacgcagaaa tcgttggtag gttattcggt gagcttagac tatgaatatg acttggttga
    20881 tgcattcagc cgtgggcaag tcccgattgt gtatgaatac actcctaaaa ttccgggtga
    20941 acgtatcagc aataaatctg tgatgacccg taaatacttg gcaaacttgg tgtcgcaacg
    21001 ataaggggaa ataaatgagt attgcaatta accaaattgt aaacggaaat gtttacatta
    21061 acggcaacag ccaaatgggg cgagtgaatg aggtcaaaat ccccgatatt gagtttgaat
    21121 ttatcgaaca caaaggcctt ggaatgcacg gtgtgattaa attacctgcc ggcacgaatg
    21181 cgattgaagc agaaatcact tgggacagtt tttatccgga agtgcgtgcg gtaatgctta
    21241 atccgtataa atacactcag ttgcaaatcc gctctaacct gcaagtgttt aactcgcagg
    21301 gcttggcagc cgaagagccg atggtcacca ttatgaatgt gtctgccggt aaaatcggcg
    21361 gcacagggca taaaaacaaa gaaaatgccg aatttgccga cacgttaaat gtacattcaa
    21421 ttaaacagac cgttgccggt cgtgagctgt tatttattga tgtgctggcg aatatctacc
    21481 gtgtgaacgg ggtggatgtg ttgcaaaaat tccgcaccaa tatcggttag taaaatcttt
    21541 aaagccgttt aaaatcaatt taaacaccgt ttaagtaaac tcctttgtga agttaaacaa
    21601 caaccactca caaaggagtt tttttatggc taacgcagct caacaagtat taaccaatct
    21661 tcgtgtacaa accacttata aattgcaata ccctatcgct ttaccagatg gtagagttat
    21721 tgaaacctta gatgtacgtc gtccaaaagg taaagatttt cgtttgcttg atgaaaaagg
    21781 gtttgaccct gaaaaagatg gcgtaaaaat tctacgcttc tatattcaac agctcaccac
    21841 acttgtgccg gaagatattg atgaactcga tgctgccgat attaagggct taaataacct
    21901 attggaagat atgcttattg agggaaagtc cgacaaataa gtgaactaga taccgtttat
    21961 gctgatctcg cttggtggtt taagttttca ccaagcgagc ttttagaatt ggatttagtg
    22021 gatattccga aatgggtaga acagatgaac aggcaaataa aagccggtta tgggcagatt
    22081 ttacggtaga gccaaataaa gggttcggtg gctaaagtaa gtaaaatggc gacgccccaa
    22141 gctagataca caccaaccca cgccaagatt gtcaaaatca atccataaat gagtacaaaa
    22201 ctaacgccct cgcttaggct ttgtatagat tgaatcgcat ctaaccagta gaagatactc
    22261 caaccgacta atgctaccgc taacaaccat ttagcggtgc attctgttct tgttacacaa
    22321 gcctcgaaac cagcccactc agtaattcga ttatttaatt tagtcagcat acaccacctc
    22381 cttaaacttt ccctatttta cgctaaggat ttaaccaatg gcaaataatt tagctatcgg
    22441 aatggtaatt ggtgcaagcc tatcatcagg ttttcacggt gctttttcag gagcaaagaa
    22501 aaagctagaa caattagaac aggctgtcgc taaaaatcag caaagccatt ctaaattagg
    22561 ttctgagctt actgcattgc gtagtaaaca agctactctc tatgcagaaa tgagccgagc
    22621 cagtagtaaa ggtggtgctg ggcttgctct tatgcaacag gaatataaaa aaattggcaa
    22681 agaaattgcc aatattagcc gagagcaacg caaatggagt acagaattag aaaaatctat
    22741 tgctaagcaa actaaattac gcaatgcaat ggaacgtcat acacaagcta aagaaaaccg
    22801 agacgagctt aaagggaaaa taattggaac ggtagcttct gcggcaatgg gtgtcggcgt
    22861 gatgaaaacc tatatggagc aagaagaagc tgcgaataat cttaaaattt caatgctgaa
    22921 agcagatggt tctttcggga aatttgaaga gattggcaag attgctgaca cattagggac
    22981 agatttaccg ggaacaaaaa aagatttcta caagctcgca atggcattaa agaaacaagg
    23041 tgtttctgat gatgtgctga ccggaggggc attaaaaact tctgccgaac tgaatgtctt
    23101 gcttgatatg gatcaggaaa gtggtggaga gtttttagcg aagtttatgg aatctcaccg
    23161 gctcaatgaa aatgagttac cacaagcagc cgattatctg caacgagcaa tgtttgccgg
    23221 cggtttaagt aaagagcaga tgtatgaatc gatgaaatac tatgctccaa aactgaactc
    23281 aatgaaactt acaggggctg agaataccga aaaagtgctg gcgattgaag caatggcagg
    23341 tcagcaaggc ttagagggtt caacctttgg tacgggctta aatatgatgt taagccgtat
    23401 gaataaagga ccggaaatgc tcaaggcagc agccaaagga atgaaagccg aagctcgaga
    23461 gatgatggag gctgtcggag tagaatttaa tttctgggat aaaaacggct cattcaaagg
    23521 cattgatgga atgctggctg aaatgacgaa atttgaaaaa atccgcaaaa aattcggtga
    23581 caaaggtgta ggtttagttg cagaagagct gtttggcatt gaaggtgggc gtcttgctga
    23641 tattttggct atgaaaggtc aaaaaggctt agatgaaatg ctgagtaaaa tgcgtgaaca
    23701 agccagcctt caagatcgca ttaaccttaa aacaaataca ttaggtgctg ccctagaatc
    23761 tttaggagga gcgtgggaaa cctttgtggg ggatattggc tctgtctttg ccgaagatat
    23821 aaaagggttt tcaaaaggct tgcaatctgc ggtggaatgg cttgtgccat ttgtatcaaa
    23881 acataaagag gcgattaaat ttgtaggtgg tttggttgct ggacttgtta ttttacgagg
    23941 cgttttacaa gctggttctt ttgttattca aacggtaact atggcaatga acgccctcaa
    24001 aattgcagca atgaccaatc ctattgtctt agtcattgga gcaatcgcag cgggtgctta
    24061 cttgatttat agccattggg atagcattgc cccttggttt gcaaatcttt ggcaaaatgt
    24121 gaccgcttac ttcaatcaat tttggacttg ggtaaaaggt gtttggtcgg gcgtgacgga
    24181 ctgggtgtct tctgtgtgga atggtgtagc cacttttttc gggcagttat ggactacgat
    24241 tactagctta tttagtgtag cttggacaaa tatccaaaca atatggggag gagcaacagc
    24301 ttggttctct ggtttatggg atgggattaa gtctgcggct tttggtatgt tcgacagtat
    24361 tagccaaaaa gtcagctctg ttgtagcaag cattaagagc tttttaggct ttggcgatga
    24421 tgtggataaa atgggggcaa aaattggcaa tgtagctacc caagtcatca gcaaagaaca
    24481 ctcaggacaa ctcagcaaaa ccgcagatat ggcagccaat acagggttct ctagcggtgg
    24541 tttcaccggg caaggcggta aatatacccc tgccggtatt gtgcataagg gcgaatatgt
    24601 gatgacgaaa gaagcgacct ctcgtttggg tgttggaatg ctggatagct taaactatgg
    24661 cggtgctatg ggtttcactc aacctgtttt gcaaccgatt ttaggtaagc aaaaaggctt
    24721 ttttggctca ctttgggacg atgtgaaatt cggggcaaac tttgtcggca atctgcttgg
    24781 cttaaatcaa ggcagcctga aaacgcctga ttttaaccca aatgcgacca atgcaagcgg
    24841 tcaaaattcg tcgattttta gcaattatga accactcaac cgaaatgcgg taacacagca
    24901 ggaaagctcg caagcaccgc agatagtcgt gaactttaac ccgacaatca atgtaaacgg
    24961 taatgctacg caagaggctc aatcgcaaat tatgcagcag ttgcaaatga gtgcttatga
    25021 gtttgagaaa ttgctcaatc gtgtgctaga ccaacgaagc cgtagagcct attaggagtg
    25081 atttatgtat tttatgttag gcaatattgc ctttgagccg gtgaatttaa ctgaatttag
    25141 cgagcaacat accgccgaat ttgccgaaca cgctgtgcta aaaggcaaac ctcgtttaca
    25201 agcgatgggc gaaaagctaa atgaacttaa tttttctctt cggttgcacc ataccatagg
    25261 cggtgtagag agccgttatc aagccttgct tgaagccaaa gcgaagcaag cggcattggc
    25321 gttaatttgg ggcagtcgtt ataagggaga ttatgtaatt gtcgatattt catcgaccac
    25381 attgttcacc gatggcagag gcaatgccct cgctcgtgaa atgcaaatca gcctgaaaga
    25441 gtttgtgggc gataatgacg gtggtgtgtt gggtgaggcg ttaaattttg gtggtggctc
    25501 actgcttggc tctattttgc caagcggtgc ggtaactacc ctatctcaaa tcaaaacagc
    25561 agtcagccga ggtgtggagc tttataacag cggcaaacgc ttagttgacg aagtgcaaaa
    25621 taccgtggcg attattcggc agttgaaaaa tgacccggca actgcattgg catatttacc
    25681 cgctgcatta gcgaatttag acggggcatt ggggcatttt ggtaatttga ccggctcatc
    25741 ggcgaccttg ggcggtttgc aggagaaact accggcagca gtggtcttta gcgaggaaat
    25801 cggcgagatt tatcagagtt tgcaaacaat gcgaagcagt ttgggtaatg cctcggcaaa
    25861 tagctgggat aattggttta caccggcaga gagtgcattg acagaggtca cagacagctt
    25921 tgaccatcta gcaaaaccgg tggcaaaaat gaccgcttgg attgtgctgc gtaccgatga
    25981 ggaggcagaa aatgacacag ttgcttaaac atatcgtcaa acagggtgag cgttgggata
    26041 acttgagcta tcaatactac ggcaatgcgt ttgaatatgg tcgaattatt gatgccaatc
    26101 cgcatatcgg tttttgcgag gtgttgccga taggggtaac aatttatatc cctgtactta
    26161 acgttaagcc aacgaataat gaaaatatgc caccgtggct aagggggcgt gatgcgtaat
    26221 gtaccgaagc ccgatttttc actgttttat gaaaaaacca atatcactgc cgagattgag
    26281 ccacatttgg tgcaactgac ctatatcgac catttggaag gtcaatcgga cgaactcact
    26341 gtggaatttg aagacattca aggcaaatgg atacgccaat ggttcccgac tcagggggat
    26401 aagctcaaag cggcgattgg ctatcagggc gaatttctga cggacatcgg tgagtttgaa
    26461 attgatgaag tggaatatag ttataagcct tccactatta acttaaaagc tctaagcacc
    26521 ggtatcagca aagccaaccg tactttaaaa ccgaaagcct atgagaatac gactcttgct
    26581 caggtggtgg caaaggtagc agataacctg aaattaaagg tagtcggtaa gattaaggct
    26641 atcccgatta aacggatcac ccaatatcaa gagcgggacg tggagttttt ggcacgcctt
    26701 gcccgagagt atcatcacag ctttaaaatc gtgggcaatc agctggtctt taccgataaa
    26761 agcgaactgg ggcaaagtga gccggtgtta atgttggaag aacgggatac tatttcccta
    26821 cgtttgcgag atcggattaa agacactgca aaggcagtgg aaatcagcgg ctatgataca
    26881 agcggtaaaa aagtggtgaa aaaacgcaaa aaggcaaaag ccttacgccc gaatataaaa
    26941 caagctaaat cagccagtga agatacgctg aaaatcatca cacgaggcga aagtcaagaa
    27001 cagattgatg cacggggtga ggctgcgttg gctacgcaaa atgaagatca ggcggctggt
    27061 gatattgagc ttatcggcaa tcctaaattg gttgccggag caacgatttt attgcgtaac
    27121 tttggcgtgt ttagtggcaa gtatctgatt aaatcatcac gccatacgat tagccgtagc
    27181 ggtggttata ctactcatat tgaggtcaga atgttggagt ttattgccga tgatttaatc
    27241 acattaggta tggaggctgg caatgcaaac gcataatttt ggggcgactt atcaagaagg
    27301 gattgtatcc gctgttgatc cgaaaacgca caaagtgcgg tgtaaaatcc ctgcgctgga
    27361 agatttagaa actgcttggc tgtcgttttt gaccccgaac gccggtggca atcagtttta
    27421 ctgtttgccc gatgtgggcg agctggtggc aatgctactt gatgcacaag gcgaaggtgg
    27481 ctgtgtgttt ggggcaattt ataacgagca agacccgaca ccggttgccg atagcgatat
    27541 gtgggttaag aaattcagca atggcacgga gatttcgcat aatcgcaaaa ccggcgatgt
    27601 ggtagtgaag actaacgggc atttaaccgc aacggctcaa ggtggggcta cgattaatgc
    27661 aaacaccgta gtcaatggca cattgcacgc taccggtaaa atcacctctg acgaagaagt
    27721 ctctgctcct gttgtgaaac aaggcacggt agagcttggc acacataaac acggcggtag
    27781 ccctgaacct aataagtaat tctttaaacc agtttaaaat cccttttaaa gatagccctg
    27841 tatcatcagg gctatgaaca gacaaacttc cattcaatta acccactggc aacttgcacc
    27901 ctcaaccgat acagttgagg tggtgcaagg tattgatgat attcatcttt gtattgtcaa
    27961 tatcctttca acccaaaaag gcacggatat tttacgccct gaatttggct ctgaccactt
    28021 tcgctacatt gactaccctg aagatgtggc tatcccgaat tttgtacggg aaattacaac
    28081 cgccttgcaa aaatgggaaa aacgcattga ggttgaagaa gtattggtgg acggttcagc
    28141 tccgcatttt atttttactg tgatgtggca cttaaccgat gatgtttatc gtgaaattta
    28201 ccgaacaacg gtataaggat aggcaatgac agaagcgatt aaaatcattg atgacgatgt
    28261 aaaaaccgta cttgccgaag cgattgccga ttatgaaaaa cgcaccggta aaatcttaca
    28321 acctgcacat attgagcgtt ccattattca aacctacgct taccgtgagc agttattacg
    28381 caaaggcatt aatcacgcct ttttacaaac ctttccgcag tttgcgacgg ggattgcgtt
    28441 ggatttgtgc ggggaaactt ttggttgtta tcggcttaga gataaacctg cccgtacttt
    28501 actacgcttt tcagtaagtg gtgaacatac agctatagtt atccctaaag gaacgcaggt
    28561 agcaattaat gacgagctat acttttcaac gctcaatgac gatgttatta ctccattaat
    28621 tacctatgtg gaaattgatg cagagtgtaa tcaggttggt gttatcggta atggttggga
    28681 atcaggaaga gtcagtaaac taaaaacagc actggcaact aattataaag taacagttga
    28741 aaacattgat attacgagcg gtgggttgat gcaggaagaa gatgaacctt accgtaagcg
    28801 aattttagcc gcaccggaag cctttagtaa ctgtggctct atcgctgcat atgattacca
    28861 cgtccgctct gtatcccaag atattgcaga tgtgaatatc tctacgccta ggggtggctt
    28921 ggtaagaatt gcggtattga cccaaaaagg gttaccggat acccgattac ttgatgatat
    28981 taaaaaacac gttagtgccg aacggctacg cccactttgc gatatggtcg aggttattaa
    29041 gcccacagaa cgccgttatc aaattacggc acgtttaata ttgttagatg gctaccgtga
    29101 ggatttggta aaagcaaaag cccgagaggc attacaactc tatttgtcag acaagactaa
    29161 aaaactcggt ttagacattg tgccgtcggc catcatttca gctttaagag ttgagggtgt
    29221 ttacgatgtg aatttaattc agccagtcaa aactattatc aacgaaacag aatgggcgaa
    29281 ctgcacagca atcagcgtag aagtcgaaga ggagcgtaga gatggctagc ttgcactatg
    29341 cggacattat tgtgcgagac cctaaatata aagcattagc ggatttaagc aagcggttaa
    29401 atttgctcga tacttcgcaa attatgacta cgctggtgga tttattgggc gacgaatgta
    29461 tcccattgct ggcagaaaaa tggtcggtaa ccggctatga cggcttattg gttgcagata
    29521 gcgaaaactc aaagcgagcc ttaattaaaa gagcaatcga actacatcaa ctaaaaggca
    29581 cgccttggtc aattcgtgaa gtattacgca gactaggttt cggagaggtt gagattgacg
    29641 agggactgaa aaatcggctg tatgaaagca cttatgtgag cggaatcccc gaaaacgaac
    29701 gctgggcgca ctatgcgatt aggttgagta acccgattac caatgagcaa gctcgcaata
    29761 tccgtaaggt cttacgcaat tttgctccgg ctcgttgctc tcttgcagtt ttggattata
    29821 aagcagatcc aattcgatat aacaataaag caacctacaa cggcacatat aaccacggtt
    29881 caagttaagg ataaattatg gcaggtgtac aagaaaccgc acagtgggaa aaccacgttt
    29941 acagaattga agaaaatgac ccagtccacg gaggagaaaa cggtgtaacc aataagccaa
    30001 ttaagcacct agcaaaccgc acgctctatc tgcgtagatt gctcaccgag gcaggacaac
    30061 gcattaaccc gaaaaaaatc acagctacca gcaaaaatag taatgattta actgggcata
    30121 ctcacgagat tgaccacgca agcctaacgc aaaaaggcat tgtgcagtta aatgcgagta
    30181 tccaatcaac tagcacaact gagtctgcaa ccccttcagc agttaaagca gcctatgata
    30241 aagcagcaac agcagaacaa aaagcgacat tggcaaatga gaaagtcgag gcgattaaag
    30301 taggcggacg aaacctcctc attcaatcca acactccaca caacgggaat gcgtactcag
    30361 tcagatacgc attggctgag gctccgaaag taggcgaaga gattgtagtc actctatggg
    30421 gtgaactcgg ctctcaacgt actggaattg gcgtttacaa ctctcaaggt gctacggagt
    30481 tggcaaaact ggtcaaaatt cgtgatggag tttatcaagg taaaggcatt tggcgtaagc
    30541 cgatgagtga gggacgagag cgaacgccta acgacacgca cctgaatgtg tatttttacc
    30601 cgaaaaccgc aacagataat aaccgtattg agcgaatcca gcttgagcga ggctcaatcg
    30661 gtacagattg gacgccaaac gaggcagact taaaggcaga gattagtgca atccgcacta
    30721 aactaatccc tgtacggggt ggcaatgttg ctacaacctt aaatgcggct aagcggtcgg
    30781 attggtttag agaaatgcaa atcccttatc aaagtggttg ggggtattac acccaagcat
    30841 ttcataactc agggacgcaa cacaactaca gcaatttacc gctgacaggt cgttattatt
    30901 ttatcgccga actctatcat aactctggtt attctcactt gcgtatcacc tatccaagtt
    30961 taaaacgcac ctttgagagt gctatcaacc ttaacaatga ggatttgatt ctagattggc
    31021 gtgaggtggt gtttttaaaa gatggattgt atcaaggcac ttttaaaaca acaggcacac
    31081 tagagtctgc ttatcgtcta agagcggctc gtgatgatga acgttatcag ccatacctgc
    31141 aaatggtcga tatgggctat gaccttgcca atcccccggt aggaaaaaac aaaattattg
    31201 gcagtgttga ttattacgtt aaaaacggca caagcgagtc ttccaaagcg acgatgatgg
    31261 cagcggcaat gcctgacaag aacgtatttt gggaagtagc attgtggaat gcagcacagc
    31321 aacggaatgt attgtttaag gggtatagca agactaacaa tttgagtatt ggtaaaacca
    31381 ccgacaatga gcgagaccga gtacaagtca atggcacaat ccaagccacc gcaccggctg
    31441 ataacgccaa taacgaccaa gtgccgacta cggcttgggt gcgtaagatg gcaaagattt
    31501 tagctgatgg caaggtgagt aaagccggtg acacaatgac tgggcattta ttcatcaaga
    31561 atggggaata ctctgcggta catacctata acacaagtgg ttggttcgca aaatgggagg
    31621 cggccccatt atctgattcg cactttgctg ccattgtata tgccaacgac agagagacag
    31681 ttatcaatcg ggtgttaatt cccaagaaga atggcacagt cgctttaatt aatgatattg
    31741 ccgataccgt tagagccgct gtgagtcgta gtgataaatc ccgtagtaga acttttcctc
    31801 tgcaaacggg gaaaaaatat acaaccacag ggagcgttac gatttatcca gatggccgaa
    31861 ttgtgcagat tttccactta aaaaatatta aagcggcgtg gtttgattat gaggcaagtg
    31921 cggtaggaga taggcataga gttgtcaata tccctctttg gactgcgatg ccaaataaaa
    31981 tttttgatgt cgatgttaaa actgttcgcc cctcaaataa tgcctcaact tactacatag
    32041 aagcggctga atggctgagt gcgtggcaga tttacggtaa tgacacgaac aaatcaagtg
    32101 tcaatattaa tctatctcga ttcagaggtg gaaaggatga agatatggac ttgtatgtaa
    32161 cagttgaggg atattaaatg gcatattttg tgaatgtgat tgatgagcaa ggcaattatg
    32221 agctaattga tgatgagttt attgggctgt atccggattt ggattttaac acattaccca
    32281 aactcacgga taagcaatat cagacctacc ttgccaaagc aaacggcaaa gagcgatttg
    32341 taaatggcga atttgtgtat gagcaaatta aggtggatat gcaagcggtc atttccgctg
    32401 aaaaatctgc aaagttagca gagattaacc aaaaagcaca agcctttatc aatgatttag
    32461 ccaaatacaa cgaaacgcct aagtttgagc gtgatacttg gcttgagcaa gcgaaagagg
    32521 caaaagcgtg ggtggctgac ccaaccgtac aaacgccaac ccttgagtta attgcgcaaa
    32581 tgcgaggcat accgctcgac acgctacgcc aaaaagccta cgaaaaagcg atggcgtatc
    32641 aaacggtggc tgctattgta gcagggcaac ggcaaggata cgaagaccgc ctagaacaag
    32701 cggaaacctt agagcaaata caggcgattg agccgatgta tcaattaccg caaggagcaa
    32761 acaatgagca aactgactaa attaaaatcg tggagctacc acgtcttaat tgcaatagat
    32821 caactcttta acgctctcac cggtggagca gcggacgaaa cattttctag ccgttgctac
    32881 cgtggtgcag tgcttgcgga aaatccgaaa aaacgttggc gtttttggca ctcttttttg
    32941 aattgcttat ttttagaccc aaagcactgc tacgccgctt ataaagcgga ggtacaccgc
    33001 aagcagtatc cgaaggcatt tagacttggg gggatttaat gaaaaagcaa aacttaaaat
    33061 tagtgcgggg cgatgatgtg agttttagat tcagcattaa agacagcacc ggacaacctc
    33121 ttgcgttaaa ggatttgtgg tttgatttgc acttagtcag ctatcaaggt gaggtgctga
    33181 ttgctctctc tactgatgat ggcagtattg agacagcaga ggctggtcag atggtgttac
    33241 attttagtca ccagcaaact gctcgagctg aatggacaag tgccaattat gacttgcaac
    33301 tcacgcacga ctatacaaga gtctaggagg tggagatgac ctctatcatt gaactagacc
    33361 tgactgatga cctcatcatt gaggtgcagt tagatagcac aatcattacc ggcgatagct
    33421 ttttagccaa cctgccggat ttactccaaa tttacaacca agcaaagtca gatagcagta
    33481 aggagcttaa caatgactaa acacaaaaac cacgaaaacc acccgattgc tataacattc
    33541 taccaacttg gcaaagatgt cggcgacatt aaccgccggc tagcggttat tgagcaacgt
    33601 gagcaatcag cacagccaag ccaaccacaa gctgaggcgg ttacaatgcc acagcaagat
    33661 gctgttgcca ttaataacat caatgccgtt ttggaggcgg tcgaaaaata caaaactttt
    33721 gaaaaataca acactcagtg gcaagagcgt tttgaaaaat tcctgtctcg taacccgaat
    33781 gattacgagt taagtgaaga gcaacgccaa aaactttacc acacgatgtg ccagcatttg
    33841 tggcaggtga actttactga aatcaatagt aaacagtatg aattaccgat cccgcaacaa
    33901 ttccagggta agtttggcta tattgtcaaa acctcgggcg gtagcacaga aattagtttt
    33961 gagttgctat ctgaaactca cagcacttat ctttatccgg atagctatat tcccgagggc
    34021 ggtggcgatg taatgctcaa gccggcttat atttatttag tgattccgga cttagtggca
    34081 atgcgtgagc cggaggtggt gggggtttca ccgctgaaac tgaacattct gcagaaacac
    34141 ctgctgacac ctcagaaact acaggagcag aagcccttga acacgaaggc aaactgattg
    34201 atggcgtatg gcattttgag cgagagccgg taaatccacc gagagatcag aattattatg
    34261 tggcaggtaa cctgttctac aacggcatac cggattgata aattgatgtt tcagtaaacc
    34321 taattagggg ggaatccccc ttttttatta ttataaggaa agaaaatgaa taaatcttta
    34381 gtagcgttag ctgttgcagc gatggcatcg aaagcacaaa ctaaacagca agcaagcaag
    34441 caagcaagca agcaagcaag caagcaagca agcaagcaag caagcaagca agcaagcaag
    34501 caagcaagca agcaagcaag caagcattgt gagatagaga aagtatttaa acaagctcct
    34561 ttaccctttt cagggcaaaa acggatgttt ttatcccatt tcaaacaggt gttaaatgca
    34621 aatattgaag cagacgggaa agattggact attatagatg tttttggtgg gagtgggttg
    34681 cttgcacata ccgcaaagcg tgagaaaccg ttagcaagag tgatttataa tgattttgat
    34741 aattacgccg aacggctaaa ccatatcaaa gagacaaatc aacttcgcca agaaatctac
    34801 caaattgttg atgaaattat accaaaaaat aagagaatta gcaatgaaat taaagctaaa
    34861 atcatcaata aaatcaatga ttttgagggg tttaaagacc tcaaatgctt aagttcttgg
    34921 ttattgttta gcggtgagca agttgcaact ttagatgagt tatttaagca cgatttttgg
    34981 cactgtgtgc ggcaaagtga ctatcctgaa gcaacgggtt atcttgatga tattgaggtg
    35041 gttagtgagt cctttcatca attattgccg agatttcacg acaaagagaa agtattattg
    35101 attcttgacc caccttatct ttgcacaaga caggaaagct ataagcagga aaattacttt
    35161 gatttaattg atttcttacg gttgatagac cttactaaac caccttatat cttctttagc
    35221 tcaaccaaaa gcgagtttat tcgctttatt cactatatgg ttcaaaacag aaaagaaaac
    35281 tggcaagcgt ttgagggagc ggaaagaata gtggttaatg cctcggcaag ttataacggc
    35341 aaatatgagg ataatatggt gtataagttc taaaaattta aacgcccttt gatagtgatt
    35401 taaagggcgt taaaaaacca ttaaaattaa gaaagtaaag ctcctgtttt ctttcgtagt
    35461 tttcgtggtt gcgtttcgca gttttgttgg ctcgctacaa ttactgttca ttgtaatgtt
    35521 taatcgacca ttggttttgc taggatcagt ttcaccaaaa taaccgttaa aaccttggac
    35581 ggtgccttct gctgctttga ttttttcagc aagtatttgt tgctttgcag cactttcatc
    35641 tgttaccttg agtacttcaa agtattcgtt ttcacgaatg agaccagtag caaagtctaa
    35701 atcgatgaaa actttacgcg cattaaaaat agctgtgatc tctgcaacgc ttaaaggttt
    35761 tttcaaacgg ataaaattag ttggcaagtg tggaaaacgt tgatatgtga aaatatcttt
    35821 gtccaaatga cgagaaacct gatctggact agtaattgct tgaactttca cttggtcaat
    35881 tgttggacta actatgccgg ttagtgtaat gtttgctgtt tgggctgtat tatgattgac
    35941 aaccatcgct ccttcatcgc tattctgaat acggcggaac gtgagatcat tgccgttgac
    36001 atctaagcgc ccaccacgat aaccaaaata gatattgtta ggatccattt gatctgatga
    36061 attgaggatt acggtaggtc tgccactcac aatacctagc tctgaaaatg cagatttttt
    36121 gttattttca tccgcttgtt gatttaatat aacagtgccg tcaccaacgc taacggagcc
    36181 tttgttttct cctttgccgt tgatagttag tgtcccttgt ccgatttttg ataatctgtc
    36241 accagcaggg ttactgattt tccagatcac atttttatct ttatcaatat caacaccggc
    36301 tcctaaccaa gtaatgcctg ctttcatacc ttccacagtg gtattaccat gaaaatggat
    36361 tgctcctgca ccttggttga tattctctgt gagacttagc gtattgtttt cacccaaaat
    36421 atggaatgtt ttaccgtgtt ggagttgagg attccaaggg ttatcgcctg tattaccatt
    36481 atgaccttga agtgttggta atgaagtatc tgctaaatta actgtaagag gagcattccc
    36541 tcctacgatt gagctggtat tgccagaagg tgtccaagtg agtctagcac catttgcatt
    36601 aatagcgcct gcattatttt ctttttctaa agcacgtaca taatgtgggt ggtgatagtt
    36661 ccagtaagat ttataaacat ctcccccaag cgtattattc tctgagaaat agtcactata
    36721 tacacctaac acaacccatt ttttggtacg aacatcataa ccaaaaagag cggagccact
    36781 atcgccaggt aaaccgagag ttgttaaggg accgtagccg tggtctttaa atacatcgtt
    36841 tatggtatta ttttcagttt ttgctactaa aatacggctg ttaaaatcgc tgcctggaac
    36901 gcttggatcg ccattagtaa caggcagaac gctacctcct gtcaaaaaag gaccgttacc
    36961 gacttcaata cgcccgttgt ttaagcgatc tctttcgttg ttaaccactg cttgtctacc
    37021 agaaccggca cgaataaaca tggggaaaat aaaagggtcg ctaaatacac tataaaaatc
    37081 ttgtacattt tcggtagtgc gttcaatctc attagctgga gcgacttcag ttactaattt
    37141 cgataaccta ggtgcgtggt agtcccagcg gggcgttggg ttacctgaac catctaaaat
    37201 cagtttttct ccttcgtcat tacgttcacg tttttctatg cctttcccga gatctgttct
    37261 ttctttattt ggatcaggca tatagttatt acggcgcacc acactataat tgtaatgatg
    37321 gtcgtcggct ttttcgctag atgaatcacc aaattgaatg tcccgatagc cttggttgtg
    37381 gtttacacta ataacgtatt gtggattaac taatgttgca atccctgttt gacgagtaat
    37441 ggaagagaag tcaatcattg gaatagacat agtctcacct gttactgttt caaaaacagg
    37501 tagatcatta gagtcttcat cacctccacc atagagaaat tcataacaac cgggtaaact
    37561 ttcattatca aagcattcag ataggcttac attcggctta ggtgaaatat ttgattccac
    37621 ttcaacctgc ttagttggtg taacctgtaa aaaagtaccg atgtttttgc ccgttttatc
    37681 aataactgga atattggttg ccccaacaaa aaatttgcct ttattttctg ctaaatcacg
    37741 aaaatattga taatcgacat caccacgtac aatagatgcc agtaatgttg gtgaaagaga
    37801 aatagcaatt gatgttgcta gaagagagag cttgaaagta tgcttcatta ttatttgaaa
    37861 cctgtataaa tatgtaagta gatcagattt gagcgctatt aaaaagatta tttaaatcga
    37921 ttaaatattc atttaaatac cacacaatta ttcagcgcga ttatcttgtt cggcataaat
    37981 ctgctcaata cccaaataag gtaataatta aaataatagg ggatatttag tagtaacata
    38041 gagaagagaa aagagtcttt attatgttat ttagagaata attttgcgat tattactttt
    38101 gcaaagtttt tcactttttc gaccgcttgt taaataaaaa gggcgaaaaa tgtttcgccc
    38161 ctaccgatta ctcttgtgga attgtacgga ttgctaactc ttccaacgct ttcggattcg
    38221 catagcttgg tgcttctgtc attaaacacg ctgcagcggt ggttttcggg aaagcgatga
    38281 catcacgaat gttatcagtt cctgtaatca acatcgttaa gcggtctaaa ccgaaggcta
    38341 agcctgcgtg tggcggagta ccgaatttta acgcatctaa taagaaaccg aatttctctt
    38401 tttgctcttc ttcgttaatg cctaaaatgc tgaacacggt ttgttgcatc tgctggctga
    38461 aaatacgtac cgagccaccg cccacttcgt agccgttaat taccatatcg taagcgtttg
    38521 ccaccgcatt ttccggatct tgcactaatt cttccggcga taattctttc ggtgaagtga
    38581 acgggtggtg cattgccgat aagttgcctt catcatcacg ttcaaacatt gggaaatcaa
    38641 tcacccataa cggtttccac gctgtggtat cggttaagcc taaatcgttc cccactttta
    38701 agcgtaacgc accgatggcg ttagtcgcaa cgtgccagtt atccgcaccg aagaatacaa
    38761 tgtcgtcttt ttgcaagttt aagcgtttaa ctaaggcttt tagcacttct tcatttaaga
    38821 attttgcaac cgggctttga atgccttcta aacctgtgtt catatcattc acttttaacc
    38881 aagccaagcc ttttgcccca taaatgccga caaattgggt gtagtcatca atatttttac
    38941 gggttagagc tgcaccgttt ggcacacgaa gtgccactac acgccctttc ggatcattcg
    39001 ccggaccgct aaatactttg aaatcaaccg attttaaaat atctgccaca tcaaccattt
    39061 ccagtgggtt acgcaaatcc ggtttgtctg aaccgaaacg ggtcattgct tcattccacg
    39121 tcatcattgg gaatttaccg agatcaacgc ctaaggtctc tttccataag ccgtggatca
    39181 tcgcttccat taatgcacgc acttcttcgg cagtcataaa gctggtttcc acgtctattt
    39241 gggtaaattc cggctggcgg tcggcacgca aatcttcatc acggaaacat ttcacgattt
    39301 ggtaataacg gtcgaagccc gacatcatta gcaactgttt aaatagctga ggtgattgtg
    39361 gcagagcata gaatttgcct ttatgcacac ggcttggcac gaggtaatct ctcgcacctt
    39421 caggagtagc tttggtcagc atcggggttt caatgtctaa gaaaccgtta tcgtccataa
    39481 aacggcggac aaaactggtg attttagcac gggttttgag cttttctgcc atttcagggc
    39541 ggcgtaaatc caaatagcgg tattttaaac gctgttcttc ggtattgttt tgattgaagt
    39601 ctaacggcaa tacttcagcg ttgttataca ccactaaatt ttttactaac acttcaattt
    39661 caccggttgc catctcttta ttgatttgcg attcatcacg ggcaatcact tcaccttgaa
    39721 tttgcacgca cgcctcagaa cgtaaggccg atgcttgctt gaaaagtgct tcatctttct
    39781 catcgaaaaa cacctgcaca atgccttcac gatcacgaat ttgcataaaa ataaaacgac
    39841 caaggttacg aacacgatga acccaaccgc ttaaggtaac tgtttgtcca aggtgtgagc
    39901 ggtttaatgc accgcagtag tgagaacgca tcataaaatt atccttttga aaataaatat
    39961 cccaagtttc ggggaaaact taaggattat agcggaaaat tcagcgaaga tggataaata
    40021 aaagcaaaca agcggtgatt tatccttcca gcccaataaa aacggctaat aacaatggag
    40081 cggctaaatt aacaataaaa ccgaagctga ttgccagcgg cacaatttga ataccgcccg
    40141 atttttgaat aatagggagc atacaatcta atgaagtcgc tccgccaatg ccgactgcgg
    40201 tggacggaaa ttgacgcata aacagtggta ctaaaaacag gcataaaatt tcacgcgaga
    40261 tgtcgttaaa aaaggcaata ctgccgtaaa tcgggcccca agcatcgttt accaatacgc
    40321 ttgaaaggga ataccaaccg aatgcagagg caaaggttaa gcctttagca agggataaat
    40381 ctaaggtgaa tgccgaaatc acgccaccaa tcagggaact tgccaccatt acaatcgagg
    40441 tataaatccc ccgcttgtta aagaacactt cacgcagggg aataccgctg tttcgcagtt
    40501 gaatccccac cccgaaaatc atcacttcta acacataggt gctggcgtgc agagggaaat
    40561 ccaccacgcc tttggtgaaa tagccgatga tcccgcctaa taaggtaatg ccgattaatt
    40621 taaaggaatc aatcaacaaa tgcaggcggg agggaagttg atcttgattg actttgtctc
    40681 ttttcatcgg ttgtaatttg tcgtaaatca ccaagccgat aatgtttgaa aggagtaaaa
    40741 tcaccactaa actaaacgcc gtaccgccaa tctgtggcag ttcggtgaga atgttatcaa
    40801 tttgtccgag agaaatcccc atcactaata aaatcaagta aaggcagagg ctgaccactc
    40861 tgtttactat tgccatatgg cggtggtttt tgagggttat taagtaaccg agaaaaagtg
    40921 gaatcagcac aatggctaaa ccgtagagca ttttttatcc tttttatcgc tatttttaaa
    40981 cttgaaattc taacaataag ggcataaaat aaaactgttt ttatatacag ttatttgtgt
    41041 tgcaagcggt cgtttttggg gaaaatattg caaatgtcga ttcaagctaa acataagcga
    41101 aaaattatcc atattgatat ggattgtttt tatgcagcgg tcgaaatgcg ggaaaacccg
    41161 gcgttggtcg gtaagccggt ggcggtgggc ggcaatgcta atcaacgagg tgtgctgaca
    41221 acctgtaatt acgaggctcg aaaattcggc ttacacagtg caatgccaac ggcaactgcg
    41281 ttgaagaaat gcccgaattt aattttattg ccggtgaata tggcgttgta taaatcggtt
    41341 tccgctcaaa ttcacgaaat ttttcatcgc tatacggatg tgattgaagc cttgtcgctt
    41401 gatgaagcct atttagatgt aaccgaatgc gaacgctatt ttggctccgc cacttggatt
    41461 gctcaagcaa tccgcaatga tattttcaat gaattgcatt taactgcctc ggcaggagtt
    41521 gctccgctta aatttttagc aaaaattacc tccgatcaaa acaaacctaa cggacaatgt
    41581 gtgattacgc ctgatgatgt gcaaaatttt gtgaaaaatc taccgcttgc aaaaattccg
    41641 ggtgtgggga aagtaaccaa tgaaaaatta aaacagcttg gctttgaaac ctgtggtgat
    41701 attcagcaag cagaaaaagc ggttatttac cgagcgtttg gcaaattcgg gcaacggctt
    41761 tgggatttta gccacggtat tgatgaacga gcggtagagc cttatcgtga aagaaaatcg
    41821 ctggcggtgg aaaatacgct gttgcacgat atttcaaccc ttgagcaagc ggaaaagatt
    41881 gtggcagatt tattcgacaa actggttttt cggttgcaac gaaactgggg cgatacgcca
    41941 ttaactgagt ttaaaaagtt aggcattaaa ctcaagtttg atgattttag ccaaaccacg
    42001 cttgaacgaa ccaccgatgg ctttgcgtat gagcgatttg gcgagttgct acagcaaatt
    42061 tttacccgaa gaaaggaacg aaaggtgcga ttaatcggtc taagtgttca ctttcccgag
    42121 aaaaaagtga ataaacagtt aaatttgtgg gaataattgt aaataatgac ttgaaattaa
    42181 ggctaaagtc attatcttat tcgtgcaatc attgcatcta tatttttgga gattgaaaac
    42241 attatggcaa aacgtgtcat tctattttta ttaactaact tagcgattac ctttgtttta
    42301 gggatcgtat taaaccttat ttttaaagtg accggcattc aagggcaaag cactgccggt
    42361 attttggtgc tttcgttagt cttcggtttc agtgggtctt taatttcgct atttatgtcg
    42421 aaatcaatgg cattgcgttc ggttggggca gaggtgatta cacagcctcg taacgaagcg
    42481 gagcaatggt tattcaacac tgtacaacgt caggctcagc aagcgaatat cccaatgccg
    42541 gacattgcga tttaccattc ggctgatgta aatgcattcg ctacaggagc aacgaaaagt
    42601 aattctttag ttgcagtcag caccggcttg ctgaattcaa tgactaaaga cgaagctgaa
    42661 gcggtagtag cacacgaagt ggcgcacatt gcgaatggcg atatggttac aatgacttta
    42721 ttacaaggcg tgttaaatac tttcgtcatt ttcttagctc gtattatttc gacaatggcg
    42781 gcaagttcac gtgacgaaaa tggcaattca agcaccaata cgctggtgtt ctgggtagta
    42841 gatattgtgt tacagatggt gtttggtgtg ttagcaacaa tgattgcaat gtggttctct
    42901 cgccaacgtg aatttcgtgc agatgcaggc tctgctcaat tagtcggtaa agagaaaatg
    42961 attgcggcat tacaacgctt gcaacgtgtt cacgaaccgc aagaaatgga aggctctctt
    43021 gctgccttta tgattaacgg tagccgtggt aaagagttgt ttatgagcca ccctccgtta
    43081 gaaaaacgta ttgaagcgtt aagaaactta taaagcacaa gcggttgttt ttgtaaaatt
    43141 ttttgcaaaa cagccgcttt tgttttctat aaaatatgcg gtaacaccga atagagagtt
    43201 gccagcaaaa acagataacg taacaatttc ccaatcacaa taaagagaat gctttgccaa
    43261 aggctaaacc gtagccagcc ggcaatgcca cagaaaatat cgcctacaat cggtaaccaa
    43321 ctaaaaagca agactaacac gccatatttt tcacttttgg ctaatgccca ttgtgaataa
    43381 cgattggtag tattctgtgg gcgagggagt aatagcccta tcgcataagt ggttatgcta
    43441 cctaaactat tacctaaggt tgcaaccaag agtaaattga acagtgaaaa tgaggataaa
    43501 gagccataag tgatgagatg ttggcttgct aaggtagtga agataatttc agaatttccg
    43561 ggtaagaggg tagcgcttag aaatccactc agaa
//
LOCUS       DANLVT010000004        43135 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.004, whole genome shotgun sequence.
ACCESSION   DANLVT010000004 DANLVT010000000
VERSION     DANLVT010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 43135)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 43135)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..43135
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.004"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..1604
                     /gene="pckA"
                     /locus_tag="PXC99_000188"
     CDS             <1..1604
                     /gene="pckA"
                     /locus_tag="PXC99_000188"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HDL5416686.1"
                     /translation="NRIEQELADLGITNVKEIVRNPSYEQLFEEEMKSDLKGYEKGVL
                     TNLGAVAVDTGIFTGRSPKDKYIVLDETTKDTVWWTSDAAKNDNKPMTQSTWQSLKTL
                     VTDELSNKRLFIIDAFCGASPEHRINVRIITQVAWQAHFVKNMFIRPTEEELKDFKPD
                     FVVMNGSQVTNPNWKEQGLNSENFVAFNITEGVQIIGGTWYGGEMKKGMFSMMNYFLP
                     LKGVASMHCSANVGEEGDVAVFFGLSGTGKTTLSTDPKRKLIGDDEHGWDENGVFNYE
                     GGCYAKTINLSIENEPDIYRAIRRDALLENVVVREDGTIDFDDKSKTENTRVSYPIYH
                     IDNIAVPSKAGHAKKVIFLTADAFGVLPPVSKLTPEQTKYYFLSGFTAKLAGTERGIT
                     EPTPTFSACFGAAFLSLHPTQYAEVLVKRMEAAGAEAYLVNTGWNGTGKRISIKDTRG
                     IIDAILDGSIEKAEMSTLPIFNLAIPTALPGVETHILDPRNTYEDKAQWQAKAEDLAG
                     RFVKNFEKYATNEEGKALIAAGPKL"
     gene            1697..2698
                     /gene="bioB"
                     /locus_tag="PXC99_000189"
     CDS             1697..2698
                     /gene="bioB"
                     /locus_tag="PXC99_000189"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HDL5416687.1"
                     /translation="MTTFQLRLKAKDELTPHPTAQYWRKCQVEGLFDLPFMDLVFRAA
                     QVHRENFDANAIQLSTLLSIKTGGCPEDCEYCPQSARYDTGIEKQTMLDVETIVEKAK
                     IAKERGASRFCMGAAWRGPRPKDIKVVSEIINAVKSLGLETCGTFGMLEEGMAEELKQ
                     AGLDYYNHNLDTDPERYNKIIHTRNHEDRMDTLGKVRNAGLKVCCGGIVGMNETRPER
                     AGLIASLANLDPQPESVPINQLIKVEGTPLTNAEDLDWTEFVRTIAVARITMPQSFVR
                     LSAGRTTMPEAMQALCFMAGANSIFYGDKLLTTENPEEDHDRQLMDKLDLYPLQYIA"
     gene            2858..2955
                     /gene="ffs"
                     /locus_tag="PXC99_000190"
     ncRNA           2858..2955
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="PXC99_000190"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            2990..3697
                     /gene="gloB"
                     /locus_tag="PXC99_000191"
     CDS             2990..3697
                     /gene="gloB"
                     /locus_tag="PXC99_000191"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HDL5416688.1"
                     /translation="MLQITPIPALKDNYIWAIRNGQDVIIIDPSEHQPALNFIAKNAL
                     NLTAILITHNHHDHTDGVSGIVEQYPNIPVYGPQEVAEFANVIVSPEQHISLFGYDVR
                     IIESGGHTAGHISYLFGYDYLFCGDALFSGGCGRVFTGDYQAQFDALQRFKNLPNSVK
                     AYPAHEYTKSNLKFAEAVLPPSCVLSEYQEQVDLLRSQNKPTLPTTIGLEMQVNPFMQ
                     AVDLAEFIALRQQKDNF"
     gene            3856..4569
                     /gene="uppS"
                     /locus_tag="PXC99_000192"
     CDS             3856..4569
                     /gene="uppS"
                     /locus_tag="PXC99_000192"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005619022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HDL5416689.1"
                     /translation="MNFDPQNMPKHVAIIMDGNGRWAKQKGKLRIFGHQNGVKAVRSA
                     VSFAAKHHIQVLTLYAFSSENWSRPETEVSALMSLFMKALDSEVKQLHKNNIRLKIIG
                     DKSAFSENLQKRIAESEKLTENNTGLILNIAANYGGYWDIVQAAQQLAVHVKSEQLAV
                     EQITPALFQQHLVTENQPQVDLLIRTSGEQRISNFLLWQIAYAELFFSPVLWPDFNDE
                     AFSDAIYAYQQRERRFGGC"
     gene            4593..5462
                     /locus_tag="PXC99_000193"
     CDS             4593..5462
                     /locus_tag="PXC99_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HDL5416690.1"
                     /translation="MLKERVLSAIIMIIAVLAAIFWLSPLPLTLVLSAIVVAAMWEWA
                     QFAGFKHPVPRAIVAMVTICLLLFAIVANTDYIRATRFITDETTPILFIGCIWWLIAL
                     VLVATYPNSAKLWEKSVAAKFLFGLATLVPFLIGTLALRFHNYAFDPYQGTYLFLYVC
                     LLVWGADSGAYFAGRAFGKRKLAPKVSPGKSWEGVIGGVLTSSLIAFTFLQLTPANVF
                     GKALATTPFILVSVGMVAISVLGDLAESMFKRQAGIKDSSQLIPGHGGILDRIDSLTA
                     AVPFFATFFFFVL"
     gene            5466..6776
                     /gene="rseP"
                     /locus_tag="PXC99_000194"
     CDS             5466..6776
                     /gene="rseP"
                     /locus_tag="PXC99_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HDL5416691.1"
                     /translation="MTSIIAFFILICVLVFVHEYGHFWAARKCGVKVIRFSIGFGKVL
                     FKKKDKQGTEFVFSLIPLGGYVQMWNDETDINAPAQQALNTKSVLQRAFIIIAGPAAN
                     FIFAILAYWVVFIAGIPTVKPVIGEILPNTIASQARIPTELEITKIGHQSIQDWESAS
                     LALVGFVGNKNVPLEGNINGNSTQKYELDLSNWSIDSAKENPLTALGIRPKSAKVTAE
                     IKQVVENSPASQVGIQAGDRILQINQQPFNWFNLVELVQAGKPIELKIEQRGQIKDLV
                     VQPEKKDERYIIGVIPSYEPLADKYRTELKYDILTAFYKSIEKVWSLTQTILQFIGNL
                     ISGDLSIKNLGGPISMAKGAGATAEIGLVYYLSFMALISVNLGVMNLFPLLPLDGGQL
                     VLLAVEAIRGKALSEKIQLKFQQIGFAFVLSLMLFAFANDIIHF"
     gene            6891..9272
                     /gene="bamA"
                     /locus_tag="PXC99_000195"
     CDS             6891..9272
                     /gene="bamA"
                     /locus_tag="PXC99_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HDL5416692.1"
                     /translation="MKKLLLSSLLIANGVVAAPFVVKDIRVEGVQPTTGESIISSIPV
                     RVGQTATDTDVSNVVRHLFSQQRFADVRATREGNTLVIKVAEKPIIGKVEIEGNQAIP
                     KDALEQNLKANLINQGEIFDAAKLEAFKEGLIEHYHSTGRYEAKIDTSVSNNTEGGVN
                     IKLAINEGEVAKAKTIKFEGNNAFSDKKLLENLDIQPDVSWWNIFESSKFEQTAYQKD
                     LETLRDFYLNRGYAKFAIQDTDVQFNDNKTEVALTYKLDEGSQYHVSEMRIIGNTANM
                     DSQLNALLKEFKPGQLFRKSDLTQIEEEIKSILGDAGYGSAKVDIYPQFNEENKTVKI
                     SFVVDAGRRIYVRKIRFEGNGVTADSTLRREMRQQEGAWLSTNKASLGKARLERTGFY
                     ESVDMSMPNVEGTADQVDVVYKIKERNTGSINFGIGYGTENGISYQAGIKQDNFLGMG
                     STISLNGTRNNYGTSVNLGYTEPYFTKDGVSLGGNIFYEDYDNSDNDSMASYKRQTYG
                     INGTLGFPVNENNSYYLGLGYTHDKIKNAAREYTREKYVKSMNFEFDPAADYYKKIKA
                     DDFDFSLGWNYNSLNRGYFPTEGTTANIGGKITIPGSDNKYYRVSADFRNYYPLNREH
                     KWVISTKASIAYTNGFGGKEVPFYQLYTAGGIGTLRGFSYGAVGPQAIYYNTKSGKFD
                     SMNNDIIGGNALAAASLELITPTPFVSEKYQHNVRTSLFVDAASAWNTKWKKDEYTNL
                     PDYGDFKRFRASAGIAFQWMSPIGPLSFSYAKPIRKYDNDDIEQFQFNIGSSF"
     gene            9352..10143
                     /locus_tag="PXC99_000196"
     CDS             9352..10143
                     /locus_tag="PXC99_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HDL5416693.1"
                     /translation="MKKLFKMTGLAVALASTTGIANAADTIGFVDPSYVLQNHPVLLD
                     ASAKFDKFMKESQEKFAADEKKLADENKTLTAERNKINEDAQKLQNEQKNVEASIKKK
                     VAALEKDAPRLRSKEIQARQNAIQKEANAFQAKVTAIQKREADFAKKAEAFQKRADEF
                     QKRIEQANKENGGINPQEAQKQAVDEVNATIKEIAKSKGYTLVLQPQVALYAEDEGKD
                     ITEAVLDAIVKKHPEIKIEKPATEAQPATEKETKAEETKPEEAKK"
     gene            10143..11168
                     /gene="lpxD"
                     /locus_tag="PXC99_000197"
     CDS             10143..11168
                     /gene="lpxD"
                     /locus_tag="PXC99_000197"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HDL5416694.1"
                     /translation="MANFRLIDLAEHIGGTLRGNADLAIQSIAALDKADSSQITFISN
                     AKYRENLTACNAGAIIVSPADVEFCRADQNLIIVANPYVAYAQLAQYMDSTPKAASEI
                     HPSAVISPEAKLGNNVSVGANAVIESGVELGDDAVIGAGCFVGKNSKIGARTQLWANV
                     SVYHNVQIGADCLIQSSTVIGSDGFGYANDKGQWIKIPQTGGVIIGNRVEIGACTCID
                     RGALDPTVIEDNVIIDNLCQIAHNVHIGFGTAVAGGVIMAGSLKVGRFCQIGGASVIN
                     GHMEICDGAIITGMGMVMRPITEKGIYSSGIPLQTNKEWRKTAALVMNIDEMNKRLKS
                     LEKRFND"
     gene            11197..11655
                     /gene="fabZ"
                     /locus_tag="PXC99_000198"
     CDS             11197..11655
                     /gene="fabZ"
                     /locus_tag="PXC99_000198"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HDL5416695.1"
                     /translation="MTTENREPNIIEVTEIMDMLPHRYPFLLVDRVTDYEEGKWLKAI
                     KNVTFNEPCFTGHFPGAPIFPGVLILEAMAQATGVLAVATYGKLSEDELYYFAAIDNA
                     RFKRPVVPGDQLQLEVEFLKEVRGITKFTGKAYVDGKLVCEADLMCARRK"
     gene            11689..12483
                     /gene="lpxA"
                     /locus_tag="PXC99_000199"
     CDS             11689..12483
                     /gene="lpxA"
                     /locus_tag="PXC99_000199"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HDL5416696.1"
                     /translation="MRLIDSTAKISPLAIIEEGAEIGAHVEIGPFSVIGKDVKIGART
                     KIHSNVVINGMTEIGEDNHIFQFASIGEINQDLKYQGEPTKVVIGNRNRIRESVTIHR
                     GTVQGGGVTKIGDDNLFMINTHIAHDCSIGNRCIIANNGTLAGHVTLDDFVIVGGMSA
                     IHQFVVIGSHVMLGGGSMVSQDVPPYVMAQGNHARPFGINFEGLKRRGFDKPTMHAIR
                     KVYKLIYSSGKTLEECLVEIEQIAATEPAIAIFKQFFKRSTRGIIR"
     gene            complement(12521..14521)
                     /gene="mnmC"
                     /locus_tag="PXC99_000200"
     CDS             complement(12521..14521)
                     /gene="mnmC"
                     /locus_tag="PXC99_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HDL5416697.1"
                     /translation="MGKLTFATLTFNDADTPVSEQFDDIYFSTQDGLAESYYVFQEGN
                     QLWEKWQSHPKEAFVIAETGFGTGLNFLAVADKFQQFRAAFPQSKLKRLYFISFEKFP
                     LTASQLADIHQRYPQFATLSENLTACWQPRQIGCQRYHFEQVYLDLWFGEIAENLPQL
                     GDLYSGTIDAWFLDGFSPDKNPEMWNEQLYLQMFRLSANGGSFATFTASSMVRRGLEA
                     AGFAVKKRKGFGKKREMLWGEKPLDSQVSEPNYPYFYAKNETADDIAIIGGGVASFFV
                     ALSLLEKGKQVTLYCKDETLAINASGNLQGAIYPQLSDDDERNVQFYIHSFDYALQRL
                     QQLKSNIEFEHNLSGVVLYAYDEKTAKKLEKMVEQTADDTLLKSCSQAELSEKLGLSV
                     PNSGAFIPQAGWLSPVQLVRNGFTWLEQKGLKIVLNHKVEHLTFSNGMWQWQTRGETV
                     RHQAVVLANGHTLNEFSQANGIPLYPVRGQVSQIPTTSELQKLKCVLCYDGYLTPMSA
                     YGTHCIGASHIRDNAETEFSLSEHWENVAKLQQNVTVCEWTQGIDLSENKAKVGIRAA
                     FRDRVPMVGAVHHFEQQKSQYANLYNQLRRKQAVENAEIFTNLYMVNGLSSRGLTTAP
                     LLGELLASLIVNEPVPISEDIWHNLSPNRAWIRKLLKGSTVA"
     gene            complement(14746..16182)
                     /gene="trpCF"
                     /locus_tag="PXC99_000201"
     CDS             complement(14746..16182)
                     /gene="trpCF"
                     /locus_tag="PXC99_000201"
                     /EC_number="4.1.1.48"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional indole-3-glycerol-phosphate
                     synthase TrpC/phosphoribosylanthranilate isomerase TrpF"
                     /protein_id="HDL5416698.1"
                     /translation="MQNIVQDNAQPNQPTILQKIVQDKAIWVAQKEQAFPLSEFQHKI
                     VKSDHDFYAALAKGTHQEPAYILECKKASPSKGLIRAEFDLDSIAQVYKNYAAAISVL
                     TDEQYFQGDFRYIDQVKRQTTQPILCKDFMISAYQVYLARFYNADAILLMLSVVNDET
                     YRELATLAHELGMGVLTETSTEAEFERALALGAKVIGVNNRDLHTLTIDMNRIVRLVE
                     KYQAQISADVCLISESGINDHQQVKNIKPYVHAFLIGSSLMGSADLNNAVRAVIFGEN
                     KVCGLTRVQDVKAVYEQGALYGGLIFAEGSPRQLSLRQAQELVVNAPLRYVGVFQNQA
                     VEFVEKMAKQLELFAVQLHGSEDEQYIAELAEKLGSKTQIWKALSVDVEVENLEFNDN
                     PQIARYVLDSKVGNQQGGTGKTFNWALIPETLKQKALLAGGIGTENIEQALAQGCVGL
                     DLNSGVESAKGVKDLQKLTACFGKIIQA"
     gene            16270..16581
                     /locus_tag="PXC99_000202"
     CDS             16270..16581
                     /locus_tag="PXC99_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqcC family protein"
                     /protein_id="HDL5416699.1"
                     /translation="MKSQVIQHLSYLEIALRVNQLWEATPPSPEALANEQPFCVETLT
                     PTQWLQWIFIPRMRAILDANADLPRNFAITPYLEEALKNEGYLQAICEPLLGLEKLLK
                     D"
     gene            16735..17463
                     /gene="truC"
                     /locus_tag="PXC99_000203"
     CDS             16735..17463
                     /gene="truC"
                     /locus_tag="PXC99_000203"
                     /EC_number="5.4.99.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(65) synthase TruC"
                     /protein_id="HDL5416700.1"
                     /translation="MTLDILYQDNSLIAINKPAGVLVHRSWLDKHETVFAMQTLRDQI
                     GQHVFPIHRLDRPTSGVLLFALNSETARIMSEQFEQHLVQKTYLAVVRGYLQGSAQID
                     YPLKVILDKIADKFSQEKEAQAAITDYKGLATVEMPYPVGKHQTSRYSLVELSPKTGR
                     KHQLRRHLKHLFHPIMGDSKYGDLHQNRALVEKSGVSRLMLHAHKLQFQHPKNLQKIE
                     IIASLDEQWQRLFAFFDWNFTQYY"
     gene            17481..17645
                     /locus_tag="PXC99_000204"
     CDS             17481..17645
                     /locus_tag="PXC99_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoaH family protein"
                     /protein_id="HDL5416701.1"
                     /translation="MDNSLLSLTHEQQQAAVEEIQKLMAQGISAGEAIQIIANQLRDK
                     YQILEKSNNE"
     gene            17638..18114
                     /locus_tag="PXC99_000205"
     CDS             17638..18114
                     /locus_tag="PXC99_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416702.1"
                     /translation="MNKLWTVLALTITSHYSFAAAEKIVTKDLPAEGKPAVVLQVFDE
                     SEKIAKPIKGNKLFISKKQTRLCWHSINLPVQNKVTIAEAFYAPAAMKLASPGSKINS
                     SADKKNHTIITEINLANNQVLNRCWGFDKTDPVGKYKMEIQINDHIFKGLEFEIVK"
     gene            complement(18151..19002)
                     /locus_tag="PXC99_000206"
     CDS             complement(18151..19002)
                     /locus_tag="PXC99_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HDL5416703.1"
                     /translation="MENQKQAEIELKIMLEQQNVALVENYLNQTSPFPVLAHQTELLG
                     NTYYDTPEQFFATQKMGLRVRSVNQQYEITLKTQGEIVGGLHIRPEYNLALPNSQPDF
                     QTLVEKYQLPFENSEQIAESLQAIFSTDFTRKTWLVQVGMSDIEVALDQGIIKNHFGE
                     EPICELEFEIKQGNLGDLFTLVEAMPKADGMWLSNLSKAQRGYLLGQAVKWEQKIATA
                     MDGENSEKLTQLLADFICVGNESLEVLVRFNQCTQQQFSNWQQARAFVKSKDYLLHNL
                     TNLKTMI"
     gene            19063..20472
                     /locus_tag="PXC99_000207"
     CDS             19063..20472
                     /locus_tag="PXC99_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcjX family protein"
                     /protein_id="HDL5416704.1"
                     /translation="MFSKIHHKLNNFVQRGLDNHLRLAVTGLSRSGKTAFITSLVDQL
                     LHINKGGNSHLNLFAPARHGQILSVKRVEQGDLTIPRFEYDKNRQSLENQPPQWPEST
                     TGISEIRLAIRYQRQHSLLRHIKETGTLYLDIFDYPGEWLLDLPLLSLSYKEWSQTQQ
                     TIHKDERAELATPWLQAVKKLDLFAKTDENLLAEFSQQYTDYLLACKAQGMQYIQPGR
                     FVLPTENAKGAPVFQFFPLLDLSEAEWEKLEQSDRNSIFHTLKKRYEHYQKKIVKPFY
                     EDYFSQFDRQVILADCLTPLNYGYNEFMEMKLGLQQLFKHFHYGNRSLFHRLFSSNID
                     KLLFIATKADHITSDQVPNLESLMRQLVQEGGRHAEFDGIETGYLAISSIQATDAVKV
                     TQQDKIIKAIRGIRSSDRKQVTLYPGSVPNRIPDKNYWQFNRFEFDQFEPKQLDYSQA
                     IPHFRMDSVLQFLLADMFE"
     gene            20518..20868
                     /locus_tag="PXC99_000208"
     CDS             20518..20868
                     /locus_tag="PXC99_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5416705.1"
                     /translation="MNTVISQRKPIHWVGSTLDDIREFPDNIKRELGFDLDLVQQGLL
                     PRDFKAMANLGSGVMEIRVKDPSGAFRLVYLAKFKDAIYCLHAFQKKTQKTAPKDIAV
                     IKARYAAVKELENE"
     gene            20861..21184
                     /locus_tag="PXC99_000209"
     CDS             20861..21184
                     /locus_tag="PXC99_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HDL5416706.1"
                     /translation="MNNIDTKIRHTTEAQGNVFEDLGFPIDEAQKLKSASQQLIETKL
                     MLMNEMSNWIDKNNLKQSEAASILGVSRPRISDMVNGKLEKFTLDTLVTFVAKTGKTI
                     QLQLS"
     gene            21292..21771
                     /gene="smpB"
                     /locus_tag="PXC99_000210"
     CDS             21292..21771
                     /gene="smpB"
                     /locus_tag="PXC99_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HDL5416707.1"
                     /translation="MAKKPKVASNTIALNKRARHEYFIEDEIEAGLELQGWEVKALRA
                     GKGNISDSYVIFRHGEAFLFGAMITPLNMASTHIVSDPTRTRKLLLNKRELDSLFGKV
                     NREGYTIVATSMYWKNAWVKVKIGLAKGKKLHDKREDIKDREWQVAKQRIMKNANRG"
     gene            21974..23281
                     /gene="serS"
                     /locus_tag="PXC99_000211"
     CDS             21974..23281
                     /gene="serS"
                     /locus_tag="PXC99_000211"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HDL5416708.1"
                     /translation="MIDQNLLRTNLEDVATALKIKRNFILDVERVKTLEEQRKTLQVK
                     TETLQAERNTRSKNIGAAKARGEDISALLAEVDSMGNELDTAKVELDKVQAEIRELLL
                     SVPNLPADEVPLGKDDSENLEVLRWGEPRQFDFEVQDHVTLGENLNGLDFAAGVKLTA
                     SRFVVMKGKLARLHRALSQFMLDLHTEQHGYVETNVPFLVNHDTLYGTGQLPKFGEDL
                     FHTQPLTGQDPNEVQRPFGLIPTAEVPVTNLVRDEIIDEDSLPLRYTAHTPCFRAEAG
                     SYGRDTRGLIRMHQFEKVEMVQIVAPEKSMEALEELTGHAEKVLQLLGLPYRKVLLCT
                     GDMGFGAAKTYDLEVWLPAQNTYREISSCSNMWDFQARRMSARCKAKGDKKTRLVHTL
                     NGSGLAVGRTLVAVLENYQNADGSITVPEVLRPYMGGLEVITA"
     gene            complement(23340..23666)
                     /locus_tag="PXC99_000212"
     CDS             complement(23340..23666)
                     /locus_tag="PXC99_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416709.1"
                     /translation="MVSVDFKNNLLEFIFYGLFSEHTQTNIINGLQFYPKAGVAFRKD
                     LRFRKRAVYQREIMVFYQLDKIDEPKKVTIIAFRLGRMKNPIRLDTVQNRRVVTEIFM
                     NYPEKD"
     gene            complement(23659..23871)
                     /locus_tag="PXC99_000213"
     CDS             complement(23659..23871)
                     /locus_tag="PXC99_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416710.1"
                     /translation="MSIVIVDTDFVVHKEDEEWTTEEIKMIEEHLLEEQSAQYQVKRE
                     VPKQFYADIAERLSRGDLTAWEQLDG"
     gene            24058..26643
                     /gene="leuS"
                     /locus_tag="PXC99_000214"
     CDS             24058..26643
                     /gene="leuS"
                     /locus_tag="PXC99_000214"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HDL5416711.1"
                     /translation="MQQQYNPSEIEPKVQRYWAENKVFKAVKDVTKEKYYCLSMLPYP
                     SGKLHMGHVRNYTIGDVVSRYQRMIGKNVLQPMGWDAFGLPAEGAAVKNNTAPAKWTY
                     ENIEYMKGQLKMLGFSYDWDREVTTCRPEYYKWEQWFFTELYKKGLVYKKTSTVNWCP
                     NDETVLANEQVHEGCCWRCDTPVEQREIPQWFIKITDYAEELLNQLDNLPQWPDQVKT
                     MQRNWIGRSEGVEITFKIAGSNVELPVYTTRPDTFFGVSYVAIAAAHPLAELAAQNNP
                     ALAEFIREAKNTKVAEAELATMEKKGMATGLFAIHPLTGKEVPVWVANFVLMHYGTGA
                     VMAVPAHDERDFEFAQKYDLQINQVIQPLDGSEWDFSKAAYTEHGKLINSAEFDGLEF
                     DVAFTAIADKLEAMGVGKRQVNFRLRDWGVSRQRYWGAPIPMMTTEEGEVVTVPLQDL
                     PVILPEDVVMNGVQSPIKADPEWAKTTYNGKPALRETDTFDTFMESSWYYARYTCPQY
                     HEGMLDSDEANYWLPVDQYIGGIEHATMHLLYFRFFHKLLRDAGILNSDEPATKLLCQ
                     GMVLADAFYYTSPTNERIWVSPTQVTLERDEKGRIIKATDPQGRELVHSGMTKMSKSK
                     NNGIDPQEMVEKYGADTVRLFMMFASPAEMTLEWQESGVEGAKRFLGRVWNLVYSYAQ
                     NPATTALDVNALDKDQKELRRDVHKTIAKVSDDIGRRQTFNTAIAAVMELMNKLTKAP
                     LETEQDKAVMAEALSAVVRMLYPITPHICFELWQVLGNEQTIDFAPWVQADESAMVED
                     EKLVVVQVNGKVRGKITVSATATEDEVKAIAKADPNVAKFLDGQQIVKEIYVPFKMLS
                     FAVKA"
     gene            26843..27331
                     /locus_tag="PXC99_000215"
     CDS             26843..27331
                     /locus_tag="PXC99_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416712.1"
                     /translation="MIKKLSLIAVFALTACGWHFKNNEVLPESFRTLTFESADQHSEM
                     SRILRNQLQLSDVKLVPSTANVAKLRLVSTSTDSKVVSVFKQAREAEKILTLNVDAIA
                     DIPNKGQYPLEVSVHRTFFDDSRAALAKSAEKEMIMKDMYEQASRQLIIKMAGLKKEL
                     SK"
     gene            27374..28399
                     /gene="holA"
                     /locus_tag="PXC99_000216"
     CDS             27374..28399
                     /gene="holA"
                     /locus_tag="PXC99_000216"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HDL5416713.1"
                     /translation="MQKIFPETLQFSLNKGLQPFYLLTGNDLLLVNETKDAIIHTARL
                     NGFDEKKEVEIKNDTNWEELFEAAQSMGLFFARQIMVLNFPDSPTATQFKKLAELCAF
                     IHSDLLFILHLPKFSKTMEKQAWFTQIELNLVQINCQTPELSKLPQWVSHRAKAMNLQ
                     IENEANQLLCYSYEGNLLALKQALQLLQLNATDGKITLTKAQEVVEHSAQFTPFQWID
                     ALFEGKIQRAQRILYHLQNEEVQAVVLLRIVQKELMILLEITRNPTAVVSSEQSLFIG
                     NLRTEFDRLKIWQNRRPFYNQITQRLTYQKLYALIQQLAELERKVKQEFSDDIWQELE
                     RFSAQFT"
     gene            complement(28400..28585)
                     /gene="yacG"
                     /locus_tag="PXC99_000217"
     CDS             complement(28400..28585)
                     /gene="yacG"
                     /locus_tag="PXC99_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HDL5416714.1"
                     /translation="MPETIVNCPTCEKEVVWSKESKYRPFCSERCQIIDLGDWAAEKH
                     SIASEEAELFSEDLEKY"
     gene            complement(28567..29202)
                     /gene="coaE"
                     /locus_tag="PXC99_000218"
     CDS             complement(28567..29202)
                     /gene="coaE"
                     /locus_tag="PXC99_000218"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HDL5416715.1"
                     /translation="MTYVVGLTGGIGSGKTTVSDLFSALGVEVIDADVVARQVVEPGT
                     PLLAKIVEHFGEEILTAEKALERTKLRQIVFNNEEEKTWLNNLLHPAIREEMVKKLQE
                     STACYVIWVVPLLIENKLTEYCDRILVVDVSPEIQLERATKRDNSKIETIKNIMAAQV
                     SREERLSYADDVIENNLPFEQGLLLIKEQVQALHYKYLALAKKEKECQKLL"
     gene            complement(29238..29894)
                     /locus_tag="PXC99_000219"
     CDS             complement(29238..29894)
                     /locus_tag="PXC99_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HDL5416716.1"
                     /translation="MLILFSLFIAVWLKAEIPRFAIRVNRQIYQETTSLVNIGLTEQQ
                     FLAQSVLQPKQPRSANLFFLLFPLIMLCSESPIIGTIFILLCFLSLLDMCYYLTDIRY
                     LVLIFLLVLWESLADFQHQTFTFTLAFCLLIGLVSQLMFKKEAFGSGDMLLLVALSPL
                     FRLEKMLLLILTASLLGIGYYLAYWLMKKQKLAKLAFIPFISTAMLLVLMLESRGINY
                     "
     gene            complement(29897..31093)
                     /locus_tag="PXC99_000220"
     CDS             complement(29897..31093)
                     /locus_tag="PXC99_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HDL5416717.1"
                     /translation="MTKIYEFHWQAQSRFGQKQRGKRLATNRDMLENLLLAQGYQHIR
                     ISRNFVLSANPKKEEVNSLLSQLALLVNSAMPLKQALSMLLQNCRNIRLYLWLNELIQ
                     HIESGYAFSQSLEKLGEFVTNQEIQLIKMGEQSGKLGIMLTNLAESRAKLEKLAKKVK
                     KILFYPVIVLLISLALSIGLLVLIVPQFAQLYGSKDKTLPLITDILFTLSECLIEQGT
                     VLLGTLLLAVIFYLFFAKKSRLVAKWKMALWAKMPLFSRIIEQSRIIFFSQNIALMLN
                     AHIPLDVALRSFLSEKNDDPILQQEIGTMLNLLQQGYKFSQGINPNVFGAEMAQMLEV
                     GEKSGNVAKMCEHISEMYQQKLDYQIDILSQLLEPMLMLIMGVIVGTIIVGLYLPIFD
                     MGALVE"
     gene            complement(31090..31542)
                     /locus_tag="PXC99_000221"
     CDS             complement(31090..31542)
                     /locus_tag="PXC99_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilB"
                     /protein_id="HDL5416718.1"
                     /translation="MEYSVTDLNSQRFIEISAEQWQKNCNEKQILLRYLAIPLQETEE
                     QLWLGIDDMQNLNACEIFAFIYHKQIEPVLISSDELKFLLNALSPEQSSRQSEIYEEN
                     TAYSLAHSEQVDRNDPIIQILENLFKFCLQHNASDIHFEPQKEKLLRQ"
     gene            complement(31563..32042)
                     /gene="ppdD"
                     /locus_tag="PXC99_000222"
     CDS             complement(31563..32042)
                     /gene="ppdD"
                     /locus_tag="PXC99_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent pilin"
                     /protein_id="HDL5416719.1"
                     /translation="MQKIVHFRPLGIRQLHRAFTLIELMIVIAIIAILATIAIPSYNS
                     YTQKAALSELLQASASYKSDVEVCIYNSGGLDNCSGGTNGIQANKTSSNTTKYLNSIA
                     VTKGVITVTGKGSLNGYGYTLTPSFSNNTISWTASCSGNDTSLFPANFCSTTVTPNG"
     gene            32223..33602
                     /gene="radA"
                     /locus_tag="PXC99_000223"
     CDS             32223..33602
                     /gene="radA"
                     /locus_tag="PXC99_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HDL5416720.1"
                     /translation="MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKE
                     AAKSDRFSGYAGETSGKVQTLSDISLQEVPRFSSGFNELDRVLGGGVVPGSAILIGGH
                     PGAGKSTLLLQVMCGLAQHLPTLYVTGEESLQQVAMRANHLGLPTANLKMLSETSVEH
                     ICNIADQEKPKIMVIDSIQVMHLSDIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVG
                     HVTKDGTLAGPKVLEHAIDASLLLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGL
                     KEVKNPSAIFLSRSEEQTPGSSVMVLWEGTRPLLVEIQALVDHSMLANPRRVAVGLDH
                     NRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQD
                     LVIFGEVGLAGEIRPVTSGQERISEAAKHGFKRAIIPHGNVPKKAIKDMQVFTVKKLS
                     DALDILYNL"
     gene            complement(33657..33887)
                     /locus_tag="PXC99_000224"
     CDS             complement(33657..33887)
                     /locus_tag="PXC99_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgjV family protein"
                     /protein_id="HDL5416721.1"
                     /translation="MDYVEILGYVAMILVACSFLLKDVIKLRVVNSLGCACFVVYGLL
                     IGSIPVTGLNALVVCINLYYISKGNRPTAAHS"
     gene            complement(34007..34501)
                     /gene="folA"
                     /locus_tag="PXC99_000225"
     CDS             complement(34007..34501)
                     /gene="folA"
                     /locus_tag="PXC99_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 dihydrofolate reductase"
                     /protein_id="HDL5416722.1"
                     /translation="MKISIIVARTINKVIGKDNQMPWHLPVDLAWFRQNTLGKPVIMG
                     RKTYESIGRLLPKRPNIILSRSGFTVEGAYAVQSLEQAVELAKNFANTAEIMIIGGGE
                     LFKQALPLAERLYLTEIQADIEGDTFFEFDEQNWALVEEKWSEIDENNPFRCRFMCLE
                     RKSV"
     gene            34577..34732
                     /locus_tag="PXC99_000226"
     CDS             34577..34732
                     /locus_tag="PXC99_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl kinase"
                     /protein_id="HDL5416723.1"
                     /translation="MATLFLVTSEQIMSKTIVIKFGTSTLTHGTKSLSRPYMLELVKL
                     NYTNSIV"
     gene            34729..35697
                     /gene="proB"
                     /locus_tag="PXC99_000227"
     CDS             34729..35697
                     /gene="proB"
                     /locus_tag="PXC99_000227"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HDL5416724.1"
                     /translation="MIVVTSGAAAAGRDYLGHPELPKTLASKQMLAAVGQSQLIRVWE
                     NLFDIYNIHIGQMLLTRADLDDRERFLNARDTLDALLAQKIIPVINENDAVATEEFKV
                     GDNDNLSALVAILAQADQLYLLTDQEGLFSADPRSNPDAKLLSVVEKITPEIRQIAGG
                     SSTGLGTGGMSTKITAADIATRSGVETIIASGSRPNVLVDLANGQNIGSKFLVQSDRL
                     EGRKRWLFAAPQVGEIVVDFGAEQALLQHKSLLPVGVSAIKGEFTRGEVIKIFSQDGK
                     ALALGIARYSSEALLRIKGKKSKEIESLLGYEFGSVAVHSDEMVVY"
     gene            35697..36461
                     /locus_tag="PXC99_000228"
     CDS             35697..36461
                     /locus_tag="PXC99_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HDL5416725.1"
                     /translation="MELGIDVLAILFAVATLAGFIDAIAGGGGLLTIPALMAAGLPPA
                     MALGTNKLQACGGSLSSSLYFIRKKAVNLKQIWLLILCTFLGSAAGTIFVQMINVDFL
                     KTLLPFLILIIGIYFLVSPKIGDEDRKQRISFTLFAFTAAVALGFYDGMFGPATGSFM
                     TLAFILLLGFNLSKAVAHAKVINFTSNFASLIFFTLGGAVMWKIGLIMMVGQFIGGTL
                     GAKMVMTKGKKLIRPMLVTMSFMMVGKMLYEQGIFN"
     gene            36464..37096
                     /gene="nth"
                     /locus_tag="PXC99_000229"
     CDS             36464..37096
                     /gene="nth"
                     /locus_tag="PXC99_000229"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HDL5416726.1"
                     /translation="MNKAKRIEILTRLRNENPKPTTELNYSNPFELLIAVILSAQATD
                     KGVNKATDKLFPVANTPQAILDLGVDGLKEYIKTIGLFNSKAENIIKTCRDLIEKHNG
                     EVPEDRDALEALAGVGRKTANVVMNTAFGHPTIAVDTHIFRVSNRTNFAPGKNVVQVE
                     EKLLKVVPDEFKVDVHHWLILHGRYTCIARKPRCGSCIIEDLCEFKEKTE"
     gene            37293..38543
                     /locus_tag="PXC99_000230"
     CDS             37293..38543
                     /locus_tag="PXC99_000230"
                     /EC_number="2.7.7.72"
                     /EC_number="3.1.3.-"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional CCA addition/repair protein"
                     /protein_id="HDL5416727.1"
                     /translation="MDIYLVGGAVRDQLLGLPVKDRDFLVVGATAEQLLAQGFQQVGA
                     DFPVFLHPETKEEYALARQERKNGNGYNGFICDFSPNVTLEQDLIRRDLTINAIAQDE
                     NSTLFDPYGGVQDLENRLLRHVSPAFSEDPLRVLRIARFAARFHSFGFTIAPETLKLM
                     REMVQSGELKHLTAERVWLETQKAFETDNPHVYFDILRLIGALKVLFPELDRLFGVPQ
                     PPQHHPEIDSGKHTLMVLQQAKRLAKKAENPTALLFAALCHDLGKGLTPADILPHHYG
                     HEVKGIQPTRELANRLKIPTEIKDFALLVTEYHTHCHKMAELRPETVIKLFNSLDVWR
                     KPNRFFDFLFACEADARGRLGFEQRNYPQPELAKKYYQAAIEIDVQQVIQDGFEKQAI
                     REELNKRRVYAVRSIKLDSDLINH"
     gene            complement(38644..39579)
                     /locus_tag="PXC99_000231"
     CDS             complement(38644..39579)
                     /locus_tag="PXC99_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDT family transporter"
                     /protein_id="HDL5416728.1"
                     /translation="MSESKPFPITTGFFAMPLGLGALGLAWLNATPITPYATTIGNII
                     AGTSVILWVALLGCYVYRVFFCFEQIKAEFMHPVQCCLFSLVTMTTMISGDVLYVWDF
                     YLGELLIFLGVIVHLIFLVFIIGGLWKGTQFLPETLHPVHYLPPIAGSFTMASSLSLI
                     GYSEIASLFLGIGIISWLVYEPTMLQRIRLSPLFPIARPSLGIVLAPAFVGASAYFSM
                     GGELDLLAKMLWGYGFLQFCFILRNLKWIAENGFSMGFWAFSFGLAAMARGAIEFYQF
                     EPLSFIGLAGFTIANFGIGLLLIFTLKLWLQQSRA"
     gene            complement(39708..39902)
                     /gene="iscX"
                     /locus_tag="PXC99_000232"
     CDS             complement(39708..39902)
                     /gene="iscX"
                     /locus_tag="PXC99_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005656371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein IscX"
                     /protein_id="HDL5416729.1"
                     /translation="MKWTDTRMIAENLYDMNPDLDPTTVRFTDMHKWICEMEDFDDDP
                     EASNEHILEAILTIWLEEYE"
     gene            complement(39902..40243)
                     /gene="fdx"
                     /locus_tag="PXC99_000233"
     CDS             complement(39902..40243)
                     /gene="fdx"
                     /locus_tag="PXC99_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISC system 2Fe-2S type ferredoxin"
                     /protein_id="HDL5416730.1"
                     /translation="MPKIVFLPHEEFCPEGMVVEAKAGDNLLEVAHEAGVEIHHACDC
                     SCACTTCHVVIREGFDSLNDTSDQEEDMLDKAWGLEIDSRLSCQCIVGEEDLVVEIPK
                     YNLNHANEAAH"
     gene            complement(40262..40627)
                     /locus_tag="PXC99_000234"
     CDS             complement(40262..40627)
                     /locus_tag="PXC99_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 51 family protein"
                     /protein_id="HDL5416731.1"
                     /translation="MSNYVKTEISEQFRTVAVEFDLEDNRIFELGERINTEYDVAYMN
                     GYNWAAFLRAYLSIYRPSLLELLEEDPDVGCYYVTYPLSEKSKEKARELKKIIVYLVE
                     NEEEILNFIGEHLDNIEWD"
     gene            complement(40637..42490)
                     /gene="hscA"
                     /locus_tag="PXC99_000235"
     CDS             complement(40637..42490)
                     /gene="hscA"
                     /locus_tag="PXC99_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HDL5416732.1"
                     /translation="MALLQISEPGQTAAPHQHKLAVGIDLGTTNSLVATVRSGQTQVL
                     LDEQERALVPSVVHYAETEKTVGIEAFAKAALDPKNTVISAKRLIGRSLADVQQRYQN
                     LPYQFVASENGLPLIQTAQGNKSPIEVSADILSHLAQFAEKRLAGELSGVVITVPAYF
                     DDAQRQSTKDAARLAGLNVLRLLNEPTAAAIAYGLESGQEGVIAVYDLGGGTFDLSIL
                     RLRKGVFEVLATAGDTALGGDDFDHLLAEWIAEQANYKPQTASEQRELLTLATQTKVA
                     LSQAVEFEVKFANWTGVVSRSQFNELIQPLVKRSLMTCRRALKDAGVEAEEVREVVMV
                     GGSTRVPFVREQVGEFFGKTPLTSIDPDKVVAIGAAVQADILVGNKPDSDMLLLDVVP
                     LSLGIETMGGLVEKIIPRNTTIPVARAQEFTTGKDGQTAMTIHVLQGERELVEDCRSL
                     GKITLRGIPAMAAGVAQVRVTYQVDADGLLNVTAMEKSTKVQASIQIKPSYGLTDEEV
                     TQMIKSSMANAKEDMEARQLVEQRVEADRVIDSVVTALKEDGSAVLSVEEFQAIEAQL
                     ARLIELKEGTDRFAIQQGIKEVDLATQEFAARRMNLSIQKALAGKKMDDLA"
     gene            complement(42806..>43135)
                     /locus_tag="PXC99_000236"
     CDS             complement(42806..>43135)
                     /locus_tag="PXC99_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease domain-containing protein"
                     /protein_id="HDL5416733.1"
                     /translation="LCQRAKQLRTNMTEAEKVLWQALRAKRFLAIKFKRQQVIGNYIV
                     DFVCFSAKLVIELDGSQHLDQQNYDNLRTHFLNGQGFRVLRFWNNQIHSDLEAVLDTI
                     FYEITRG"
BASE COUNT        13205 a         9055 c         8565 g        12310 t
ORIGIN      
        1 taaatcgtat tgaacaagaa cttgcagact taggcattac aaatgtaaaa gaaatcgtgc
       61 gtaaccctag ctatgagcaa ctgtttgaag aagagatgaa atcggatctt aaaggttatg
      121 aaaaaggcgt cctaacaaat ttaggcgcag tagcggtaga taccggcatt ttcacggggc
      181 gttcgccgaa agataaatat atcgtattag atgaaacgac aaaagatacc gtctggtgga
      241 catctgatgc agctaaaaat gataataaac cgatgactca atctacttgg caaagtttaa
      301 aaaccttagt gaccgatgag ttatctaata agcgtttatt tattattgat gctttctgtg
      361 gtgcaagccc tgagcatcgc atcaatgtgc gtattattac ccaagttgcg tggcaagctc
      421 actttgtgaa aaatatgttt attcgtccaa cagaagaaga attaaaagat ttcaaaccgg
      481 attttgtggt aatgaacggt tcccaagtaa ctaacccgaa ctggaaagag caaggcttaa
      541 attcagaaaa ctttgtggca tttaatatca cagaaggtgt tcagatcatt ggcggtactt
      601 ggtacggtgg tgagatgaaa aaaggtatgt tctctatgat gaactacttc ttaccattaa
      661 aaggtgtcgc ttcaatgcac tgttcagcca atgtgggcga agaaggtgat gtggcggttt
      721 tctttggttt atcaggaacc ggtaaaacga cactatcaac cgatccgaaa cgcaaattga
      781 ttggtgacga tgaacacggt tgggacgaaa acggcgtatt taactatgaa ggtggttgct
      841 atgcgaaaac catcaacctt tctattgaaa acgagccgga tatttatcgt gcaatccgcc
      901 gtgatgcgtt attagaaaac gtggttgtgc gtgaagatgg cactattgat tttgatgata
      961 aatcaaaaac agaaaatacc cgtgtgagct atccgattta tcatattgat aatattgccg
     1021 tgccgtcaaa agcaggacac gctaaaaaag tgattttctt aacggcagat gcattcggcg
     1081 tattgccacc ggtgtctaaa ttaacgcctg aacaaactaa atactacttc ttatcaggct
     1141 ttaccgcaaa attagcaggt acagagcgtg gtattactga gccaacccca actttctctg
     1201 cttgtttcgg tgcggcgttc ttatcactcc acccgacaca atatgctgaa gtgttagtga
     1261 aacgtatgga agcagccggt gcggaagcct atttagtgaa taccggttgg aacggcacag
     1321 gtaaacgtat ttcgattaaa gatacacggg gtattattga tgccatctta gacggctcaa
     1381 ttgagaaagc ggaaatgagt acattaccaa tcttcaattt agcaattcca actgcgttac
     1441 cgggtgtaga aacccacatt ttagaccctc gtaacactta tgaagacaaa gcacaatggc
     1501 aagctaaagc agaagattta gctggcagat ttgtgaaaaa ctttgaaaaa tatgcgacca
     1561 acgaggaagg caaagcatta attgctgctg gtccgaagtt ataagttgta attataagtt
     1621 ataatcgcta aaaaattagt ttaggactaa accttgaatg aggtttagtc cttttgtata
     1681 aaggagaagt acaataatga caacattcca attaaggctg aaagccaaag atgagcttac
     1741 cccacaccca acagcacaat attggcgaaa atgccaagtg gaaggactat ttgatctgcc
     1801 gtttatggat ttagtgttta gagcggcaca agttcaccgt gaaaattttg atgctaatgc
     1861 gatccagctt tcaacgttac tctcaattaa aacaggaggc tgtccggaag attgcgaata
     1921 ttgcccccaa tctgcccgct atgatacggg aatagaaaag caaacaatgc ttgatgtaga
     1981 gacgattgta gaaaaagcta aaattgccaa agagcgtgga gcaagccgct tttgtatggg
     2041 ggctgcgtgg cgaggaccta ggcctaaaga tattaaagta gtctcagaaa tcatcaatgc
     2101 ggtgaaatca ttggggctag aaacctgtgg tactttcggt atgcttgaag agggaatggc
     2161 agaagaatta aagcaagcag ggctggatta ctacaaccat aatttagata ccgaccctga
     2221 acgctataac aaaattatcc atacccgaaa tcacgaagat cgaatggaca ctttaggtaa
     2281 agttcgcaat gccggcttga aagtttgctg tggcggtatt gtgggaatga acgaaacccg
     2341 ccccgagcga gcaggcctaa ttgcaagcct cgctaacctc gatcctcaac ctgaaagcgt
     2401 accgattaat cagttgatta aagtagaagg tacaccgctt accaatgccg aagatttaga
     2461 ctggacagaa tttgttcgta ccattgcggt agcaagaatt actatgcctc aaagctttgt
     2521 ccgactttct gctggcagaa ctactatgcc ggaggcaatg caagccctct gttttatggc
     2581 aggagcaaat tctattttct atggcgataa attacttact acagaaaatc cggaagaaga
     2641 tcatgatcgc caattaatgg ataaattaga tttatatccg ctacaatata tagcctgagt
     2701 gccaatgatt ttcgcctgaa tgaaaattaa agaatcaatc gttattttac gcaaatttct
     2761 aacataaaat aaccgcttgc aaaattcgtt cttgtcttat ttttaaattt atctataatg
     2821 tgaggcctta cgcaagcttg cgtaattcga tggggcgtta ttggttcctc gcaatggtgt
     2881 tcagcttact tgatcaggtt cggaagaaag cagtctgggt tgaaatttcc gtgtgccgag
     2941 ggaggctggt aatgccccac ccttttttca gttctatcag gagaacgtta tgctccagat
     3001 cacccccatt ccggcattaa aagataatta catttgggca atccgtaacg ggcaagatgt
     3061 gattattatt gatccatcag aacatcagcc agcattaaac tttattgcaa aaaatgcgtt
     3121 aaatttaacc gctatcttga ttacccataa tcaccacgac catactgatg gggtgagtgg
     3181 tattgttgag caatatccga atatccctgt ttatggtccg caagaagtgg ctgaatttgc
     3241 caatgtgatt gtctcgcctg aacaacatat cagcctgttt ggttatgatg taaggattat
     3301 tgaaagtggt gggcataccg cagggcatat cagttattta tttggctatg attatctgtt
     3361 ttgtggcgat gcgttattct ccggcggttg cgggcgggtt ttcaccggtg attaccaagc
     3421 ccaatttgat gcgttacaac gctttaaaaa tctgcctaac tcggttaaag cctacccggc
     3481 tcacgaatac accaagagca atttgaaatt tgcagaagcg gttctaccac caagctgtgt
     3541 attatcggaa tatcaagaac aggttgatct tttacgttcg caaaacaaac cgactttgcc
     3601 aaccactatt ggcttggaaa tgcaggtgaa cccgtttatg caagcggtcg atttagccga
     3661 atttattgca cttcgtcagc aaaaagacaa tttttaacct catatttcta attaagcatt
     3721 aaagcctctc actttaatgc tttttggtta aataaaacct ttgcaaacat cgcttgtcaa
     3781 ttccactctg gcttatccta tggtatagtt acgactattt ttagcttaat ttattatttt
     3841 agtgagtaaa attctgtgaa cttcgatcct caaaatatgc ctaagcacgt tgccattatt
     3901 atggatggca atggcagatg ggctaagcag aaaggaaaat tacgcatttt tggtcatcag
     3961 aatggtgtaa aggcagttcg ttctgcagtt agttttgcag caaagcatca tatccaagtt
     4021 ttaaccctct acgcatttag cagtgagaat tggagcagac cagaaactga agtttcagct
     4081 ttaatgtctc tgtttatgaa agctttagat tctgaagtta aacaattaca taaaaataat
     4141 attcgcttaa agattatagg cgataaatcc gcctttagcg aaaatttaca aaaacgcatt
     4201 gccgaatcgg aaaaattaac cgaaaacaat actgggctaa tcttaaacat tgctgccaac
     4261 tatggtggtt actgggatat tgttcaagct gctcaacaac tagcagtgca cgttaaatct
     4321 gaacaacttg ctgtggagca gattacacca gcattgtttc aacaacattt agtgacagaa
     4381 aaccagccgc aagtggattt attaattcga accagtggtg agcagcggat cagcaatttt
     4441 ctattatggc aaattgctta tgccgagctg ttttttagcc cggttttatg gcctgatttt
     4501 aatgatgagg cttttagtga tgcaatttat gcttatcagc aacgtgaacg ccgattcggt
     4561 ggttgttaat ataaaaagaa taaggaaata caatgcttaa agaacgtgta ctttcagcga
     4621 ttattatgat tattgccgtg ctggctgcca tattttggct ctcaccactt cctttaactt
     4681 tagtgttatc ggcaattgtt gtggctgcaa tgtgggaatg ggctcaattt gccggcttta
     4741 aacaccctgt gccacgtgca attgtggcaa tggtgacaat ctgcttatta ctttttgcga
     4801 tcgttgcgaa tactgattat atccgagcca cccgttttat tactgatgag actaccccta
     4861 tcctctttat tggctgtatt tggtggttaa ttgcccttgt cctagtggca acttacccca
     4921 actcggcaaa actgtgggaa aaatctgttg cagctaaatt cctatttgga cttgctacct
     4981 tagtgccgtt tttaattggc acgctcgcat tgcgtttcca taattatgca tttgatccat
     5041 accaaggaac ttatttattc ctttacgtct gtttattagt ttggggagct gattcaggtg
     5101 cttattttgc tggcagagcc tttggcaaaa gaaaacttgc cccaaaagta tctccgggta
     5161 aatcgtggga aggcgtaatt ggtggcgtac tcacctctag tttgattgcc tttacctttt
     5221 tacaacttac accggcaaat gtattcggca aagcattagc cactacccca tttattttag
     5281 tttcggtcgg tatggttgct atttcagtct taggcgattt ggcagaaagt atgtttaaac
     5341 gccaagcagg cattaaagac agtagccagt taattcctgg gcatggaggt attttagatc
     5401 gtattgatag tttaaccgct gccgttccgt tttttgctac attcttcttt tttgtactat
     5461 agaatatgac gtccatcatt gcatttttta ttttaatttg cgtactggtt tttgtgcatg
     5521 aatacgggca cttttgggct gctcgcaaat gcggggtaaa ggtgatccgt ttttcgatcg
     5581 gatttggtaa agtcttattt aagaaaaaag ataaacaagg aaccgaattt gttttttcac
     5641 ttattcctct gggcggctat gtacaaatgt ggaatgatga aacggatatc aacgctccag
     5701 ctcaacaagc tcttaacaca aaatctgtat tgcaacgtgc atttattatt atagccggtc
     5761 ctgctgcaaa ttttattttt gcgattttgg catactgggt cgtttttatt gccggtattc
     5821 caactgttaa acctgttatt ggggaaattt taccaaacac tatcgcctcc caagcaagaa
     5881 ttcctaccga attggaaatt acaaaaatcg gtcatcaatc tatccaagat tgggaaagtg
     5941 catctttagc actagttggt tttgtgggca ataaaaatgt accgttagag ggaaatatca
     6001 acggcaactc aacacaaaaa tatgaactcg atttatctaa ctggagtatt gactcagcca
     6061 aagaaaaccc attaaccgca ttaggtattc gccccaaaag tgcaaaagtc accgctgaaa
     6121 ttaaacaagt tgtcgaaaat tctcctgcaa gccaagtggg tattcaagca ggtgatcgta
     6181 ttcttcaaat taaccagcag ccatttaatt ggttcaattt agttgaactg gtacaagcag
     6241 gtaaacctat tgaacttaaa attgaacaac gaggtcagat taaagacctt gtcgtccaac
     6301 cagaaaaaaa agacgaacgc tatattatcg gggtaatacc aagttatgag cctcttgcag
     6361 ataaatatcg taccgaatta aaatatgata ttcttaccgc attttataaa agtatcgaaa
     6421 aagtgtggtc tcttacccaa accatactcc aatttatcgg taatttaata agcggtgatt
     6481 tgtccattaa aaatttaggt gggccaattt caatggcaaa aggagccggt gcaacagctg
     6541 aaatcggctt agtttattac cttagtttta tggctctaat cagtgtcaat ttgggggtaa
     6601 tgaacttatt tccactttta cccttagatg gtgggcaact tgttttattg gctgttgaag
     6661 caattcgtgg aaaagcatta tcagaaaaaa tacaactcaa attccaacaa attggatttg
     6721 cattcgtgct gagtttaatg ttattcgcct ttgccaacga tataattcac ttttaacaag
     6781 cggttaaaaa aggtgacttt tttgcaaaaa gcaccctgac atcaaaatcc ataatatgga
     6841 tttaaactat attcttaata attttgcaaa acgatcatag gataatttca atgaaaaaat
     6901 tattactttc ctctctttta attgcaaacg gtgtagttgc tgcacctttc gtagtaaaag
     6961 acattcgtgt tgaaggtgtg caacctacaa caggcgaatc tatcatttca tctattccgg
     7021 ttagagtagg tcaaacagca acggatactg acgtatctaa tgtcgtccgc catctattca
     7081 gccaacaacg ttttgcagat gttcgtgcaa cacgagaagg caatacgctt gtcatcaaag
     7141 tcgctgaaaa accgattatt ggcaaggtag agatcgaagg taaccaagcg attcctaaag
     7201 atgccttaga gcaaaattta aaggcaaact taattaacca aggtgaaatt tttgatgctg
     7261 ccaagcttga agcttttaaa gaaggactaa tcgaacatta tcactctacc ggccgttatg
     7321 aagccaaaat tgacacatct gtttcgaata acaccgaagg tggcgttaat attaagttag
     7381 cgattaatga aggtgaagtt gctaaagcca aaacaattaa gtttgaaggt aataatgcct
     7441 tctctgataa aaaattatta gaaaacttag atattcaacc tgatgtttct tggtggaata
     7501 tttttgaaag tagcaaattc gaacaaaccg cctatcaaaa agacttagaa acattaagag
     7561 atttttattt aaatcgtggc tatgcaaaat ttgctatcca agataccgat gttcaattca
     7621 atgataataa aacggaagtt gcattgacct ataaattaga tgaagggtca cagtaccatg
     7681 tcagtgaaat gcgcattatc ggtaatacag ccaatatgga tagccagctc aacgccctac
     7741 taaaagaatt caagcctggt caattattcc gtaaatcaga ccttacacaa attgaagaag
     7801 agattaaatc tattttaggg gacgcaggtt atggttcagc taaagtagat atttatcctc
     7861 aatttaatga agaaaataaa accgtaaaaa tcagttttgt tgtggatgcc ggtcgtcgta
     7921 tttatgttcg taaaatccgt tttgaaggta atggtgtcac tgcagattca acattacgtc
     7981 gtgaaatgcg ccaacaagaa ggtgcttggc tttccacaaa caaagcttct ctaggtaaag
     8041 ctcgtttaga aagaaccggt ttctatgaaa gtgttgatat gtcaatgcca aatgtagaag
     8101 gtacagccga tcaagttgat gtagtgtata aaattaaaga acgcaatacc ggtagtatta
     8161 actttggtat cgggtacggc acggaaaacg gtatcagcta tcaagcagga attaaacaag
     8221 ataatttctt aggtatgggg tcaactatca gtctaaatgg tacccgtaat aactacggta
     8281 ccagcgttaa cctaggctat accgaacctt actttactaa agatggtgta agtttaggcg
     8341 gtaatatttt ctatgaagat tatgataact cagacaatga ttcaatggct tcatataaac
     8401 gccaaaccta tggtattaac ggcacattag gcttcccggt aaatgaaaat aactcatact
     8461 acttaggttt aggctatacg cacgataaaa ttaaaaatgc agcacgtgag tacactcgtg
     8521 agaaatatgt aaaatcaatg aactttgagt tcgatccagc tgccgattat tacaaaaaaa
     8581 tcaaagctga tgattttgat ttttctctcg gttggaacta caacagcttg aatagaggct
     8641 atttcccgac tgaaggaact accgcaaaca ttggcggtaa aatcacaatt ccaggctctg
     8701 ataataaata ttaccgagtc agtgcagact ttagaaatta ttacccgtta aaccgtgagc
     8761 acaaatgggt aatttcaacg aaagctagca ttgcttatac taatggattt ggtggtaaag
     8821 aagttccgtt ctatcagctt tatactgccg gaggtattgg tacactaaga ggtttctctt
     8881 acggtgcagt agggcctcaa gcgatttact ataatacaaa atccggcaaa tttgatagca
     8941 tgaataatga tattatcggt ggtaatgcgt tagctgcggc aagcttggaa ttaatcacac
     9001 caacgccatt tgtgagcgaa aaatatcagc acaatgtaag aacctctctc tttgttgatg
     9061 ctgcaagtgc atggaataca aaatggaaga aagatgaata tacgaacttg cctgactatg
     9121 gtgatttcaa acgtttccgt gcttccgccg gtattgcatt ccaatggatg tctccaatcg
     9181 ggccattatc attctcttat gcgaaaccaa ttcgtaaata tgataatgat gatattgaac
     9241 aattccagtt caacattggt agttcattct aattaaccac aagcggttaa taaatgtaaa
     9301 aaatttgcaa cttagccgct tatttcaaaa ctgttcatac aaggaaaaca aatgaaaaaa
     9361 ttatttaaaa tgactggctt agccgtagct ttagcctcta caaccggaat cgcgaatgct
     9421 gcagatacta ttggtttcgt agatccaagc tatgtattac aaaaccaccc tgtattatta
     9481 gatgcttcgg caaaatttga taaattcatg aaagaaagcc aagaaaaatt tgctgctgat
     9541 gaaaaaaaat tagcagatga aaataaaacc ttaacggctg agcgcaataa aattaatgaa
     9601 gatgcgcaaa aattacaaaa tgaacaaaaa aatgtagaag cttctatcaa gaaaaaagtg
     9661 gcagcattag agaaagatgc gcctcgctta cgttcaaaag agattcaagc acgtcaaaat
     9721 gcgattcaaa aagaagcaaa cgcattccaa gctaaagtaa cagcaattca aaaacgtgaa
     9781 gctgattttg caaaaaaagc agaagccttc cagaaacgtg cagatgaatt ccaaaaacgt
     9841 attgaacaag cgaataaaga aaatggtggc attaacccac aagaagcgca aaaacaagcg
     9901 gttgatgaag taaatgcaac cattaaagag atcgcaaaat cgaaaggtta cactttagta
     9961 ttacaaccac aagtagcact ttatgctgaa gatgaaggta aagatattac tgaagcagta
    10021 cttgatgcta ttgttaaaaa acatccggaa attaaaatag aaaaacctgc aactgaagct
    10081 caaccagcta cagaaaaaga aaccaaagct gaagaaacta aaccagaaga agcgaaaaaa
    10141 taatggcaaa tttccgttta attgatttag cggagcatat cggcggtact cttaggggta
    10201 acgccgattt ggctattcaa agtattgctg ctttagataa agccgacagc tcgcaaatta
    10261 cctttatctc aaatgcaaaa tatcgggaaa atttgaccgc ttgcaatgct ggagctatta
    10321 tcgtcagccc ggcagatgta gaattttgcc gagcagatca aaatcttatc atcgttgcca
    10381 atccgtatgt tgcttatgct caactggctc aatatatgga ttctactccg aaagcagcga
    10441 gcgaaatcca cccaagtgcg gtgatttcac ctgaagctaa actgggtaat aacgtatcgg
    10501 taggggcaaa tgccgtgatt gaaagtggcg tagaattggg cgatgatgcc gtgatcggtg
    10561 caggctgttt tgtgggaaaa aacagtaaaa tcggggcaag aacccaactt tgggcaaatg
    10621 tttcggtgta ccacaatgta caaatcggag ctgattgctt gattcaatcc tcaacggtta
    10681 tcgggagtga tgggtttggc tatgcgaatg acaaagggca atggattaaa atcccacaaa
    10741 ccggtggtgt gattatcggt aatcgtgttg aaattggtgc ttgcacttgt attgaccgag
    10801 gtgcattaga tccaaccgta atcgaagata atgtgattat tgataacctt tgccaaatcg
    10861 cccataatgt acacattggt tttggcactg ccgttgccgg cggcgtcatt atggcaggca
    10921 gtctaaaagt tggtcgcttt tgccaaattg gtggagcaag tgttatcaac ggtcatatgg
    10981 aaatctgtga tggtgccata attaccggaa tgggtatggt tatgcgccca attacagaaa
    11041 aaggaattta ctcatcaggt attccattac aaaccaataa agaatggcga aaaaccgcag
    11101 cacttgtaat gaatattgat gaaatgaaca aacgcttaaa atcgttagaa aaacgtttta
    11161 acgattaatt ttattagagg tcttaaagtg acagaaatga caactgaaaa tcgtgagcca
    11221 aatattattg aagtaaccga aattatggat atgttaccgc atcgctaccc tttcctgtta
    11281 gttgatcgcg taaccgatta tgaagaaggg aaatggttaa aagccattaa aaatgtaacc
    11341 ttcaatgaac cttgttttac cgggcatttt cctggcgcac caatcttccc aggagtattg
    11401 attctggaag caatggctca agcaactggc gtattagccg ttgccactta tggtaagtta
    11461 agtgaagacg aactctacta ttttgccgca attgacaatg ctcgctttaa gcgaccggtt
    11521 gtgccgggcg atcaacttca acttgaggtt gaatttctta aagaagtacg tggtattact
    11581 aaatttaccg gtaaagcata cgttgatggc aaattagtct gtgaagcaga tttaatgtgc
    11641 gctcgccgta aataattcga tataagccca aactagaggg aacaaactat gcgtctaatt
    11701 gattcaacag caaaaattag cccgcttgcc atcattgaag aaggtgctga aattggcgct
    11761 cacgttgaaa ttggtccatt ttcagtcatc ggtaaagatg tcaaaatcgg ggctagaacg
    11821 aaaattcact caaatgttgt cattaacggc atgactgaaa ttggtgaaga taaccatatt
    11881 ttccaatttg ccagcattgg tgaaatcaac caagatctaa aataccaagg tgaaccaacc
    11941 aaagtggtga tcggtaatcg taaccgtatt cgtgaaagtg ttactattca ccgaggtacg
    12001 gtacaaggcg gtggcgtgac gaaaatcggt gatgataact tatttatgat caacacccac
    12061 atcgcacacg actgctctat cggtaaccgt tgtattatcg ccaataatgg tacgctagca
    12121 ggtcacgtta ccctagatga tttcgtgatt gtgggaggaa tgtccgccat tcaccaattc
    12181 gttgtgattg gttcacacgt tatgcttgga ggcggttcaa tggtcagcca agacgtaccg
    12241 ccttatgtca tggcacaagg taaccacgca cgcccatttg gtattaactt tgaagggtta
    12301 aaacgtcgtg gctttgataa accaactatg cacgctattc gcaaagtcta taaactgatt
    12361 tactccagcg gaaaaacatt ggaagagtgc ctagtagaaa ttgagcaaat tgcagcaaca
    12421 gaacctgcga ttgctatttt taaacaattc ttcaaacgtt ctacccgtgg tattattcgt
    12481 taataaacga aaccccgaaa tcaattcggg gtttgtttta tcaagcgacc gtcgaacctt
    12541 tcaacaattt tcgaatccaa gctcgatttg ggctaaggtt atgccaaata tcctcactga
    12601 ttggcacagg ctcattcaca atcaggcttg ctaacaattc ccctagaagt ggtgcagtcg
    12661 tcaaacctcg agaagacagg ccgtttacca tatacagatt ggtaaaaatt tcagcatttt
    12721 ctaccgcttg tttccgtctc aactggttgt ataaattggc atattggctt ttttgctgct
    12781 caaaatgatg cactgcccca accatcggta cacgatcacg aaacgccgca cgaataccga
    12841 ctttggcttt attttcagat aaatcaattc cttgcgtcca ctcacaaacg gttacatttt
    12901 gctgaagttt tgcaacattc tcccaatgct ccgataaact aaactcggtt tctgcattat
    12961 cccgaatatg gcttgctcca atgcaatgcg tgccataggc tgacattggc gttaaataac
    13021 catcataaca aagcacacac ttcagttttt gtaattcgct tgtagtcgga atttggctca
    13081 cttgccctcg taccggatac aacggaatgc cgttcgcttg gctaaattca ttcaacgtat
    13141 gtccatttgc cagcacaacc gcttgatgtc gaaccgtttc tcccctcgtc tgccattgcc
    13201 acattccatt agaaaaggtt aaatgctcaa ctttgtgatt cagtacaatc ttcaaccctt
    13261 tctgctccag ccaagtaaag ccatttctaa caagttgtac cggtgaaagc caaccagctt
    13321 gcggaataaa tgccccgctg tttggcacgc ttaaacctaa tttttcactt aattctgcct
    13381 gtgaacaaga ttttaataag gtgtcatcag ccgtctgctc caccattttt tccagttttt
    13441 tagccgtttt ctcgtcatag gcgtaaagca ctaccccgct taaattatgc tcaaactcaa
    13501 tgttggattt cagttgttgc aagcgttgca atgcataatc aaaactatgg atataaaact
    13561 gtacatttcg ctcgtcatca tcgcttaact gtgggtaaat cgccccttgt aaatttcctg
    13621 aagcatttat tgccaaggtt tcatctttgc aatacagcgt gacttgcttg cctttttcta
    13681 acagcgataa cgcaacgaag aaactcgcta ctccgccacc aataattgca atgtcatcag
    13741 cggtttcatt tttggcataa aaataggggt aattaggctc ggaaacttgg ctatctaacg
    13801 gtttctcgcc ccaaagcatt tctcgttttt tgccaaatcc tttgcgtttt ttcactgcaa
    13861 aacctgcggc ttccagccct cgtctgacca tacttgaagc ggtaaaagta gcaaaactgc
    13921 cgccattggc acttagtcga aacatttgca gatataactg ttcgttccac atttctgggt
    13981 ttttatcagg cgaaaagcca tctaaaaacc aagcgtcaat cgtgccgcta taaagatcgc
    14041 ctaattgggg taagttttca gcaatctcac cgaaccataa atctaaataa acctgctcaa
    14101 aatgataacg ttggcaacct atttggcgag gctgccaaca agcggttaaa ttttcagata
    14161 atgttgcaaa ttgcggatag cgttggtgaa tatcagctaa ttggctggcc gtcagaggaa
    14221 atttctcaaa tgagataaaa tagagtcgtt ttagtttact ttgcggaaat gctgcccgaa
    14281 actgttggaa tttgtcagca acggctaaaa aattcaagcc cgtgccaaag ccggtttccg
    14341 caataacaaa agcctctttc gggtgagatt gccacttttc ccacagttgg ttaccttctt
    14401 gaaacacata gtaactttcc gccaaaccat cttgggtaga aaaataaata tcatcaaatt
    14461 gctccgacac cggtgtatct gcatcattaa atgtaagtgt cgcaaaagtc agtttaccca
    14521 tcatatcccc ttaaaaacaa aacacggaaa accccaagat tttccgtgtt tcaaccagtt
    14581 caatagtacc aatgttagaa aatgttgctg gcaaaaataa cgatcatacc aagtgcgcct
    14641 acaaccgtta gcattgaata accaaaagta cccattttac aatcctcatt gttaattatg
    14701 attaaaacgg ctttattcta gcataatttc catcgctttg aatgcctatg cttgaataat
    14761 tttgccaaaa caagcggtca atttttgtaa atcttttacg cctttggcac tttccacgcc
    14821 agaatttaaa tctaacccga cacagccttg agcaagggct tgctcaatat tctcagtgcc
    14881 aataccacct gccaataacg ctttttgttt taaggtttct ggaatcaacg cccaattaaa
    14941 ggttttgcct gtgccgcctt gctgattgcc tactttgctg tctaatacat aacgagcaat
    15001 ctgtggatta tcgttaaatt ctagattttc aacctcaaca tcaaccgata aggctttcca
    15061 gatttgagtt ttactaccta atttctctgc cagttctgca atgtattgct catcttccga
    15121 gccgtgcaat tgaactgcaa ataactcaag ctgttttgcc attttttcca caaattcgac
    15181 cgcttgattt tggaacaccc ccacataacg caacggtgca ttcaccacca attcttgggc
    15241 ttggcgaagt gaaagctggc gaggcgagcc ttcggcaaaa attaaaccgc catataatgc
    15301 cccttgctca taaaccgctt tcacatcttg cacacgggtt aagccacaca ctttgttttc
    15361 accaaaaatc accgcccgca ccgcattatt gagatcggca cttcccatta aactgctgcc
    15421 gattaaaaaa gcatgaacat acggcttaat gtttttcact tgctggtgat cgttaatacc
    15481 cgattctgaa atcaaacaga catcagccga aatttgggct tggtattttt ccaccaaacg
    15541 cacaatgcgg ttcatatcaa tcgtgagcgt gtgcaaatca cggttattaa cgccaattac
    15601 cttcgcccct aaggctaagg cacgttcaaa ttccgcctcc gtgctggttt cagtcaaaac
    15661 gcccattcct aactcgtgag ccagtgtggc aagttcacgg taggtttcat catttaccac
    15721 cgataacatc aataaaatcg catcagcatt ataaaaacgg gcaaggtaaa cctggtatgc
    15781 cgaaatcata aaatctttac acaaaatcgg ctgtgtggtt tggcgtttga cttgatcgat
    15841 ataacggaaa tcgccttgaa aatattgctc atcggttaaa accgaaatcg ccgcagcgta
    15901 atttttatac acttgggcaa tactgtctaa atcgaactca gcacgaatta acccttttga
    15961 cggtgaagct tttttacatt ctaaaatata agctggttct tggtgtgtgc ctttggcaag
    16021 agccgcatag aaatcatggt cgctttttac aattttgtgc tgaaattcac ttaacggaaa
    16081 ggcttgctct ttttgtgcca cccaaatggc tttatcttgt acgatctttt gtaaaatcgt
    16141 cggttggttt ggttgagcgt tatcttgaac gatgttttgc atataaattc ctagagcgaa
    16201 atcggtttga atggtaaaat ctgcccttat ttttacccga aaaagtctca tttcacaagc
    16261 aaaactaaga tgaaatcaca agttatacag catttatctt atttagaaat cgccctgaga
    16321 gttaatcaac tttgggaggc gacaccacca agccctgaag ccttagccaa tgagcaacct
    16381 ttctgcgtgg aaaccttaac cccaacccaa tggctacaat ggatttttat tcccagaatg
    16441 cgggccattt tagatgcaaa tgccgattta cctcgcaatt ttgcaatcac cccttattta
    16501 gaagaggcat tgaaaaacga aggttattta caagcgattt gtgaaccgct attaggtttg
    16561 gaaaagttgt tgaaagatta acttctctct cagttctttt attaatctga caaattcgtt
    16621 gatagtgcca gcgtccacgc tggtactaat tttaacggtt aattaatcaa aatttggcac
    16681 aagcgaggac gcttgcgcca tcatagagat ttgataaatt atacttaatg tattatgacc
    16741 ttagatattt tataccaaga caactcgctt atcgccatca acaaacctgc cggagtgttg
    16801 gtgcatcgtt cttggttaga taaacacgaa acggtgtttg caatgcaaac cctgagggat
    16861 caaatcgggc aacacgtttt tccgattcac cgccttgacc gcccaacctc aggtgtattg
    16921 ctgtttgctc tcaacagcga aaccgcccga ataatgagcg agcagtttga acaacaccta
    16981 gtacaaaaaa cttatttggc ggtggtgcgt ggctatttac aaggttcggc acaaattgat
    17041 tatccgctca aagtgatttt agataaaatt gcggataaat tttctcagga aaaagaggct
    17101 caagcggcga ttactgatta taaaggctta gcaacggttg aaatgcctta ccctgtcggc
    17161 aagcaccaaa cctctcgtta tagtttggtt gaacttagcc ctaaaaccgg gcggaaacat
    17221 cagcttcgcc gccacctgaa acacctgttc cacccgatta tgggagacag caaatatggc
    17281 gacttacacc aaaaccgtgc tttagttgaa aaatcaggcg taagtcgttt aatgttacac
    17341 gcccataaat tgcaatttca gcacccgaaa aatttgcaaa aaatagagat aattgcatcg
    17401 cttgatgagc aatggcaacg cctctttgca ttttttgact ggaactttac tcaatattat
    17461 tagacaaaaa agaggattga atggataatt cacttttatc attgacacac gagcaacaac
    17521 aagccgcagt agaagaaatt caaaaactga tggcacaagg catcagtgcc ggagaggcaa
    17581 ttcaaattat tgctaatcaa ttacgtgaca aatatcaaat attggagaaa tcaaacaatg
    17641 aataaattat ggacagtgct tgccctaaca ataacttccc actatagctt tgctgccgct
    17701 gaaaaaatag tcactaaaga tttaccggca gaaggaaaac ctgcagtcgt gctacaggtt
    17761 tttgatgaaa gtgaaaaaat tgcaaaacct attaagggaa ataagctctt tattagcaaa
    17821 aaacaaacaa ggctttgctg gcacagtatt aatcttcctg tacaaaataa agttactatt
    17881 gcagaagctt tctatgcccc tgctgcaatg aaattagctt ctcccggctc taaaattaat
    17941 tcttctgcag acaagaaaaa tcatactatc attactgaaa taaaccttgc aaataatcaa
    18001 gtattaaatc gttgctgggg ttttgataaa actgaccctg tcggtaaata caaaatggaa
    18061 attcaaatta acgatcacat tttcaaaggt ttagaatttg aaattgtaaa ataacctaaa
    18121 agccacagag taacaccctg tggctttttg ctaaatcatt gtttttaaat tggttaaatt
    18181 gtgcagcaaa taatctttac tcttcacaaa ggctctcgcc tgttgccagt tgctaaattg
    18241 ttgctgagtg cattgattaa aacgtaccag cacttccaaa ctttcattgc cgacacaaat
    18301 aaaatcagct aataattggg ttaatttttc actgttttca ccatccattg cagttgcaat
    18361 tttctgctcc catttaaccg cttgtccgag caaataaccc cgctgggctt tgcttaaatt
    18421 actcaaccac atcccatccg cttttggcat tgcctcaacc aaagtaaata agtcgcctag
    18481 atttccttgc ttgatttcaa actccaattc acaaatcggc tcttcaccaa aatgattttt
    18541 aatgatgccc tgatctaacg ctacctcaat gtcagacatc cccacttgca ccaaccaagt
    18601 tttacgagtg aaatcggtgc tgaatatcgc ttgcaagctt tctgcaatct gctctgaatt
    18661 ttcaaacggc aactggtatt tttccactaa tgtttgaaaa tccggctggc tattgggtaa
    18721 agctaaatta tattccggac gaatatgcaa accgcctaca atttcccctt gtgtttttaa
    18781 cgtgatttca tattgttgat tcacagaacg cacccgcagc cccatttttt gcgtggcaaa
    18841 aaattgctcg ggcgtatcat aataggtgtt gcctaacaat tccgtttgat gagcaagcac
    18901 agggaatggc gaggtttgat tcaagtagtt ttccactaac gccacattct gctgttccaa
    18961 cattattttc agttcgattt ctgcttgttt ttggttttcc atttcacacg cccctgcaac
    19021 gttgtataat caagcggtta ttttatcaat aaattttgca aaatgttttc aaaaattcac
    19081 cataaactga ataactttgt ccagcgtgga ctcgacaacc atttacgcct cgccgttacc
    19141 ggcttaagcc gtagtggcaa aacggcattt attaccagct tggttgatca gcttttgcat
    19201 atcaacaaag gcggtaattc gcatttaaac ctgtttgcgc ctgcacgcca cgggcaaatt
    19261 ctatcggtaa aacgcgttga gcaaggggat ttaactattc cccgctttga atatgataaa
    19321 aaccgccaaa gccttgaaaa tcaaccacct caatggcctg aatccaccac tggcattagc
    19381 gaaattcgcc ttgcgattcg ctaccagcgg caacattctc tgctacgtca tattaaagaa
    19441 accggcacgc tttatttgga tattttcgat tacccgggcg aatggctgtt agatttaccc
    19501 ctgctctccc tttcctataa agaatggtcg caaacgcaac aaaccataca taaagatgag
    19561 cgtgcagagc ttgccacacc ttggttacaa gcggttaaaa aactcgatct ttttgcaaaa
    19621 accgatgaaa atttactggc agaattcagc caacaataca ccgattattt gctcgcctgc
    19681 aaagctcaag gaatgcaata tattcagccg gggcgatttg tgttgccaac tgaaaatgcc
    19741 aaaggtgcac cggtattcca attttttccg ttattagatt taagcgaagc tgagtgggaa
    19801 aagttggaac aaagcgacag aaacagtatt ttccataccc tcaaaaaacg ctatgagcat
    19861 taccagaaaa aaatcgtcaa accgttttat gaagattact tctctcaatt tgaccgccaa
    19921 gtgattttgg cagactgcct cacaccgtta aattatggct ataacgaatt tatggaaatg
    19981 aaattagggt tacagcaact gtttaaacat ttccattatg gcaatcgttc gctatttcac
    20041 cgtctgtttt cgtccaacat tgataaattg ctatttatcg caacaaaggc agatcacatt
    20101 actagcgacc aagtgccgaa tttggaaagc ctaatgcgac aattagtgca agaaggggga
    20161 agacacgcag aatttgatgg tatcgaaacc ggctatttag ccatttcctc gattcaagca
    20221 accgatgcgg tgaaagtgac tcagcaagat aaaatcatta aagcgataag agggatccgt
    20281 tccagcgata gaaaacaagt gacactctac cctggcagcg tgccaaatcg catacccgat
    20341 aaaaattact ggcaatttaa ccgttttgaa ttcgaccaat tcgagcccaa gcaacttgat
    20401 tatagccaag cgattccaca cttcagaatg gattcggtgc tacaattttt attggcggat
    20461 atgtttgagt aaaatcttgt tgcatatttc cattaaaggt ataaaatttt atacattatg
    20521 aatactgtaa tttcccaacg aaaaccaatt cactgggttg gatcaacctt agatgatatt
    20581 cgtgaatttc cggataacat taaaagagaa ctcggttttg atcttgattt agttcagcaa
    20641 ggcttattac cgagggattt taaagcgatg gcaaatttgg gttcaggcgt aatggaaatt
    20701 cgagtaaaag atccctcagg ggcttttcgc ttagtgtatt tagctaaatt taaagatgca
    20761 atttactgtt tacacgcttt ccaaaagaaa acgcaaaaaa cagcccctaa agacattgct
    20821 gtcattaaag cacgctatgc tgccgtaaag gagttagaaa atgaataata ttgatactaa
    20881 aattcgccat actacagaag ctcagggtaa tgtttttgaa gatcttggtt tccctattga
    20941 tgaagctcaa aaattgaaat ctgccagtca gcaactgatt gaaactaaac tgatgctaat
    21001 gaatgaaatg agcaactgga ttgataaaaa taatctcaaa caatcagaag cggcttctat
    21061 tctaggtgtt agccgccctc gaatttctga tatggtcaat ggcaagttag aaaagtttac
    21121 cctagatacc ttagtcactt ttgttgcaaa aaccggcaaa acaatccaat tgcaattatc
    21181 ctgatatttg caaaatttta ctcaaattca accgcttgtt gcttttatca ttcactaaca
    21241 aggttatttc aagtaaaatt gtgactaatt ttttattaat aaacacaaat tatggcaaaa
    21301 aaacctaaag ttgcatcaaa tacgattgcg ttaaataaac gtgccagaca cgaatatttc
    21361 attgaagatg aaattgaagc cggcttagag ctacagggct gggaagtcaa agcattgcgt
    21421 gccggaaaag gcaatatcag cgatagctat gtcatctttc gccacggcga agccttctta
    21481 ttcggggcaa tgattacgcc tttgaatatg gcatcaaccc atattgtcag cgacccgacc
    21541 cgcacccgca aacttctact gaataaacgt gagttagact cactgttcgg taaagttaat
    21601 cgtgaaggtt ataccattgt tgccacctca atgtattgga aaaatgcgtg ggtgaaagta
    21661 aaaatcggct tagccaaagg gaaaaaactg cacgataaac gtgaagatat taaagaccgt
    21721 gaatggcaag tggctaaaca gcgtattatg aaaaacgcca atcgtggcta aatgaataat
    21781 taccctctcc ccttgtggga gagggacaga aaaattgcgt tcagcaattt ttcagggaaa
    21841 gggggatttg taaaagttca aggaaaaaca acgcttgccc tctctctgaa aaatatttct
    21901 gaacgaaata tttttcggtc tctctcccat aaagggagag agtgaaacac aaatttaaac
    21961 taaggaacat acaatgatcg accaaaacct acttcgtacc aatttagaag acgttgctac
    22021 agctcttaaa atcaaacgta attttatttt agatgtagag cgagtaaaaa cccttgaaga
    22081 acagcgtaaa acgctacaag ttaaaaccga aaccttacaa gcagaacgca acactcgctc
    22141 caaaaacatc ggtgcggcaa aagctcgtgg cgaagatatt tcagctttat tagccgaagt
    22201 agattcaatg ggcaacgaat tagacacggc aaaagtagaa ttggataaag tacaggcaga
    22261 aatccgtgag ttgttgcttt ctgtgccaaa cttaccggca gatgaagtac cactcggtaa
    22321 agacgatagc gaaaacttag aagtattacg ttggggcgaa ccacgtcaat tcgactttga
    22381 agttcaagat cacgttaccc ttggcgaaaa cttaaacggt ttagattttg ctgccggtgt
    22441 aaaattaacc gccagccgtt ttgtggtaat gaaaggtaaa cttgcccgct tacaccgtgc
    22501 attatctcaa tttatgttgg atttacacac tgaacaacac ggctatgtgg aaaccaatgt
    22561 gccattttta gtcaatcacg acactctata cggcacaggt cagctaccaa aatttggcga
    22621 agatttattc catactcaac cattaacagg gcaagatcca aacgaggtgc aacgcccatt
    22681 cggtttgatt ccaaccgctg aagtgccagt aacgaactta gtgcgagatg aaatcattga
    22741 tgaagacagc ttaccactgc gttataccgc ccacacccct tgtttccgtg cagaagccgg
    22801 ttcttatggg cgtgatactc gtggtttaat tcgtatgcac caatttgaaa aagtggaaat
    22861 ggtgcaaatt gtcgcccctg aaaaatcaat ggaagcctta gaagaattaa ccggtcacgc
    22921 agaaaaagtc ttacagcttt taggcttgcc ataccgcaaa gtgctactct gcactggtga
    22981 tatgggcttt ggtgcagcaa aaacctacga cttagaagtt tggctaccgg cacaaaacac
    23041 ttaccgtgag atttcttctt gctcaaatat gtgggatttc caagcccgcc gaatgtctgc
    23101 acgttgtaaa gctaaaggcg acaagaaaac tcgcttggtt cacaccttaa acggctcagg
    23161 tttagcggtt ggtcgcacac tggtcgctgt gttagaaaac taccaaaatg ccgatggctc
    23221 tattactgtg cctgaggtgt taagacctta tatgggtggt ttggaagtaa ttaccgctta
    23281 agattaataa atgaaaccaa tctcagaaat ggggttggtt tttttaataa atcttatccc
    23341 taatcttttt caggataatt cataaaaatt tcagtaacta ctcggcggtt ttgcactgta
    23401 tctaaacgaa taggattttt cattctccct aaacgaaatg caataatggt gacttttttc
    23461 ggttcatcta ttttatctaa ttgatagaat accattattt cccgttgata aaccgctcgc
    23521 tttctgaaac gtaaatcctt gcgaaatgcg acacctgctt ttggataaaa ctgtaaacca
    23581 ttgatgatat tcgtttgagt atgctccgaa aataatccat agaaaataaa ctctaataga
    23641 ttatttttaa aatcaacact aaccatctaa ctgctcccaa gcagttaaat ctcctcgtga
    23701 taaacgttca gcaatatcag cataaaattg tttcggtact tcccttttta cttggtattg
    23761 agctgattgt tcttctaata aatgttcttc tatcatcttg atttcttctg ttgtccactc
    23821 ttcatcttct ttatgtacaa caaaatcggt atctacaatc acaatagaca tacctagctc
    23881 cttcaagtac tggttatata ttctgtattt tgcctgttct aaattcagct gtctagcttt
    23941 tctgttactc acaatttgca aatttttcat caaattccac cgcttgccat tcaaaaaaag
    24001 gcgtttttgc ggtatcctat cggcaatttt ttcagttaaa tttaaaggtt aaattttatg
    24061 caacagcagt ataacccaag tgagattgaa cctaaggttc agcgttattg ggcagaaaat
    24121 aaagttttta aagcagttaa agacgttacc aaagagaaat actattgcct ttcaatgttg
    24181 ccttatccgt caggtaagct acatatgggg cacgttcgta actacaccat tggtgatgta
    24241 gtgtctcgtt atcagcgtat gatcggtaaa aatgtattac agccgatggg ttgggacgct
    24301 ttcggtttac cggcggaagg tgctgcggtg aaaaataata ccgcaccggc aaaatggact
    24361 tacgaaaaca tcgaatatat gaaaggtcag cttaaaatgt tgggcttctc ttatgactgg
    24421 gatcgtgaag tcaccacttg ccgtccggaa tactacaaat gggagcaatg gttcttcaca
    24481 gaactttata aaaaaggctt agtgtataaa aaaacctcaa ccgtaaactg gtgtccgaat
    24541 gatgaaactg tgcttgccaa cgagcaagtt cacgaaggtt gttgctggcg ttgtgacacc
    24601 ccagtggaac agcgtgaaat tccacaatgg tttatcaaaa tcactgacta tgctgaagaa
    24661 ttactcaatc agttagataa tctcccacag tggccggatc aagtaaaaac catgcaacgc
    24721 aactggatcg gtcgttccga aggggtagaa atcaccttta aaattgccgg ttcaaacgta
    24781 gaattaccgg tttacactac ccgtccggat accttcttcg gcgtaagcta tgtggcgatt
    24841 gctgcggctc acccattagc agaattagct gcacaaaata acccggcatt ggctgaattt
    24901 atccgtgaag cgaaaaacac caaagtggca gaagcagaat tagccaccat ggagaaaaaa
    24961 ggaatggcaa ccggcttgtt cgccattcac ccgttaacag gaaaagaagt accggtttgg
    25021 gttgctaact ttgtgttaat gcactacggt acaggtgcgg taatggcggt tccggctcac
    25081 gatgagcgtg actttgaatt tgcacaaaaa tacgatttgc aaattaatca ggtaattcaa
    25141 ccgcttgatg gctcagagtg ggatttcagc aaagccgctt acaccgaaca cggtaaatta
    25201 atcaactctg ccgagtttga cggcttggaa tttgatgtgg ctttcactgc gattgccgat
    25261 aaattagagg caatgggtgt aggtaaacgc caagtgaatt tccgtctgcg tgactggggt
    25321 gtttctcgtc aacgttattg gggtgcacca atcccaatga tgaccacaga agagggcgaa
    25381 gtggttaccg ttccattaca agatttaccg gtgattctcc ctgaagatgt ggtaatgaac
    25441 ggcgtgcaaa gcccaatcaa agccgaccca gagtgggcga aaaccactta caacggcaaa
    25501 ccggcattgc gtgaaaccga taccttcgat acctttatgg agtcctcttg gtattatgca
    25561 cgttatactt gcccacaata tcacgaagga atgttagatt cagacgaggc aaactactgg
    25621 ctaccggtcg atcaatatat cggcggtatt gaacacgcca caatgcactt gctctacttc
    25681 cgtttcttcc ataaattgtt gcgtgatgcg ggtattttaa attcggacga accggcgact
    25741 aaactgttat gccaaggtat ggtgcttgcc gatgcgttct actacaccag cccaactaac
    25801 gagcgtattt gggtcagccc gacacaagtc accttagaac gtgatgagaa aggtcgtatc
    25861 atcaaagcaa ccgatccaca agggcgtgag ctggttcaca gcggtatgac taaaatgtcg
    25921 aaatcaaaga acaacggtat cgatccgcaa gaaatggtgg aaaaatatgg tgctgacaca
    25981 gttcgcttgt ttatgatgtt tgcctcccct gcggaaatga cattagaatg gcaagaatcc
    26041 ggcgttgaag gggcaaaacg tttcttaggt cgtgtttgga atttagttta tagctatgcc
    26101 caaaatccgg caacgactgc attagatgtg aatgccttag acaaggatca aaaagaactt
    26161 cgccgtgatg tacacaaaac gattgctaag gtgagtgatg atattggtcg tcgtcaaacc
    26221 ttcaatacag cgattgctgc ggtgatggaa ttgatgaaca agctcaccaa agccccactt
    26281 gaaaccgaac aagataaagc cgtaatggca gaagctttaa gtgcggtggt gcgtatgctt
    26341 tacccaatca cgccacatat ctgctttgag ttatggcaag tgttaggtaa tgaacaaacc
    26401 atcgattttg ccccttgggt acaagccgat gaatccgcaa tggtggaaga tgaaaaatta
    26461 gtggtagtac aagtcaacgg aaaagtgcgt ggcaaaatca ctgtttcagc tactgctacg
    26521 gaagatgaag ttaaagctat cgctaaagcc gatccaaacg ttgctaaatt cttagatggt
    26581 cagcagattg taaaagaaat ctacgttcca tttaaaatgt tgagctttgc ggttaaggcg
    26641 taacaaacac actctccctt atatgggaga gagaccgata aatatttcgt gcagaaatat
    26701 ttatcagaga gagggtacaa gcggttattt tcttggaaaa ttttgcaaaa aatagccccc
    26761 tctccctgct ttttcttcta aacgaagaaa aacctgtccc tctcccacaa ggggagaggg
    26821 gaataaacaa ggaaatctca ttatgattaa aaaactctct ctcatcgctg tttttgctct
    26881 taccgcctgc ggttggcact ttaaaaacaa tgaggtatta cctgaatcgt tcagaacatt
    26941 aacctttgaa agtgcagatc aacacagcga aatgtctcga attttacgca atcagttaca
    27001 actaagcgat gtaaaattag tgcctagcac ggctaatgtg gcaaaattac gtttggtttc
    27061 aacctcaaca gacagcaaag tggtttctgt gtttaaacaa gctcgtgaag cagaaaaaat
    27121 cttaacgcta aacgttgatg cgattgccga tattccaaat aaagggcaat accctttaga
    27181 agtttcggtt catcgtactt tctttgatga ctctcgtgca gctttggcaa agtctgctga
    27241 aaaagagatg attatgaaag atatgtatga acaagcctct cgccaattaa ttatcaaaat
    27301 ggcgggctta aaaaaagaac tctcaaaata atcattgtag gggcgaaata tgtttcgccc
    27361 attgtttatc tgtatgcaaa aaatctttcc ggaaacactt caattttcat taaacaaagg
    27421 actacagccc ttttatctat taacagggaa tgatctgcta ttggtgaatg aaaccaaaga
    27481 tgccattatt cacaccgccc gtctcaacgg ttttgatgaa aaaaaagaag ttgaaatcaa
    27541 aaacgatact aactgggaag aacttttcga agcagctcaa tcaatgggat tgttttttgc
    27601 acgccaaatt atggtgctga attttccgga ttcccccaca gcgacacagt ttaaaaaact
    27661 ggctgagctt tgtgccttta ttcatagtga tttgctcttt atcctgcact tacctaaatt
    27721 ttccaaaaca atggaaaaac aggcttggtt cacgcaaatt gagctaaatc tcgtgcaaat
    27781 taactgccaa acaccggaac ttagcaaact tccacaatgg gtcagtcatc gagcaaaagc
    27841 gatgaatttg caaattgaaa atgaagcaaa ccaactcctt tgttatagct acgaaggcaa
    27901 tctactggcg cttaaacagg cattacaact gctacaactc aatgcaactg atggaaaaat
    27961 cacgctgaca aaagcccaag aagtggttga acactccgcc caatttactc catttcaatg
    28021 gattgatgca ttatttgaag gaaaaatcca aagagctcaa cgcattttgt accatctgca
    28081 aaatgaagaa gtacaagcgg tcgttttatt aagaattgtg caaaaagagt tgatgatttt
    28141 actcgaaatc actcgcaacc caaccgcagt cgtttccagc gaacaatcac tttttatcgg
    28201 taatttacga acagaatttg accgcttgaa aatttggcaa aaccgcagac ctttttacaa
    28261 ccagatcact caacgactga cttaccaaaa actttacgcc ctaatccaac aactggctga
    28321 attagagcgt aaggtgaaac aagaatttag cgatgatatt tggcaagaat tagagcgttt
    28381 ttccgctcaa tttacctaac taatactttt ctaaatcttc gctaaacaac tccgcttctt
    28441 cactggcgat agagtgcttt tctgccgccc aatcgcctaa atcaataatt tgacaacgct
    28501 cgctacaaaa cgggcggtat ttactttctt tactccacac cacttctttt tcacaagtcg
    28561 ggcagtttac aatagtttct ggcattcttt ttcctttttt gctaatgcta agtatttata
    28621 atgtaaggct tgaacctgct ctttaattaa aagcaagccc tgttcaaatg gcaagttatt
    28681 ttcaatcaca tcatcagcat aacttaatct ttcttcacgg ctgacttggg ctgccataat
    28741 atttttaatg gtttcaattt tactgttatc acgtttggtt gctctttcca gttggatttc
    28801 aggagaaaca tcaacaacca atatacgatc acaatattcg gtgagcttat tttcaattaa
    28861 aagcggcacg acccaaatca cataacaagc ggtcgattct tgcaattttt ttaccatttc
    28921 ttctcgaatg gcggggtgaa gtaaattatt gagccacgtt ttttcctctt cattgttaaa
    28981 cacaatttgg cgaagtttag tgcgttctaa tgctttttca gcggttaaga tctcttcacc
    29041 aaaatgctct acaatcttgg ctaaaagcgg tgtacccggt tcaacaactt ggcgagccac
    29101 cacatcagca tcaattacct ctaccccaag agctgaaaat aaatcagaca ctgtggtttt
    29161 gccactgcct attccaccgg ttaagcctac aacgtaagtc ataaaaattg attcctcaaa
    29221 ataaaaacaa accaattcta gtaattaatc cctctgcttt caagcattag caccagcaac
    29281 atcgctgtgc taataaacgg aataaacgcc aattttgcta atttctgctt tttcattagc
    29341 caataagcca agtaataacc aatccctagc aggctggcgg ttaatatcaa taagagcatt
    29401 ttttcgagcc gaaagagtgg ggataacgca accaataaca acatatcgcc cgagccaaat
    29461 gcctcctttt taaacataag ctgtgaaacc aagccaatca acaggcaaaa agcaagggta
    29521 aaggtaaaag tttggtgttg gaaatcggct aaactctccc ataacaccaa caaaaatata
    29581 agcacgaggt agcgaatatc cgttaggtaa tagcacatat ccagcagtga taaaaaacag
    29641 agcagaataa aaatcgtgcc gataataggg ctttccgagc agagcataat caatggaaaa
    29701 aggagaaaaa atagatttgc cgatcggggt tgtttcggtt gtagcaccga ttgagccaaa
    29761 aactgttgct cggttaagcc aatattcact aatgaagttg tttcttggta aatttggcga
    29821 ttgactcgaa tggcaaatcg agggatctcc gctttgagcc aaaccgcaat gaagagggaa
    29881 aacagtatta acatcgctac tccaccaaag cccccatatc aaaaatcggt aaatacagcc
    29941 caacaataat agtgccgaca atcacgccca ttatcaacat tagcatcggt tctaatagct
    30001 gagacaaaat atcaatttgg taatctaatt tttgttggta catctcacta atatgctcac
    30061 acattttcgc cacattgcca cttttctccc caacctcaag catttgtgcc atctcagcac
    30121 caaacacatt cgggttgatc ccttgtgaaa atttgtagcc ttgttgtaac aaattaagca
    30181 tagtgccaat ttcttgctgt aaaatcgggt catcattttt ctcggataaa aacgacctca
    30241 aggcaacatc aagcggaata tgagcattca gcattaaggc aatattttgg ctgaaaaaga
    30301 taatgcgaga ttgctcaata attcggctaa acagtggcat tttagcccat agagccattt
    30361 tccactttgc gactaacctg ctcttttttg caaaaaacag gtaaaaaatg accgctagta
    30421 gtaacgtgcc aagtaatact gtgccttgct caatcaagca ttcggaaagg gtaaataaaa
    30481 tatcggtaat gaggggtaaa gttttgtctt ttgagccata aagttgggca aactgcggta
    30541 caatcaaaac caatagcccg atagataaag cgagcgaaat cagcaacaca atcaccgggt
    30601 aaaacaggat tttcttcact tttttcgcca atttttccaa tttcgctcgg ctttcagcta
    30661 aattagtcag cataatgccc agttttccgc tttgttcgcc cattttgatt agctgaattt
    30721 cctgattggt cacaaattca cccaatttct ccaacgattg tgaaaaagca tagccacttt
    30781 caatatgctg aatcagctca ttaagccata gataaaggcg gatatttcgg cagttttgca
    30841 acaacataga taatgcctgt tttaacggca tggcagaatt aaccaacaat gcaagctgtg
    30901 atagcaagct attcacctct tcttttttcg ggtttgctga aagcacaaaa tttcggctaa
    30961 tccgaatatg ctgataacct tgtgccagca aaaggttttc caacatgtct cgattcgttg
    31021 ccaaccgctt gccccgctgt ttttgcccaa atcggctctg ggcttgccaa tgaaattcat
    31081 agattttcgt cattgcctaa gcaatttctc tttttgtggt tcaaaatgaa tatctgaggc
    31141 gttgtgttgc aaacagaact taaataaatt ctctaaaatt tggataatcg gatcgtttct
    31201 atccacttgt tccgaatgag ccaatgaata cgccgtattc tcctcataaa tctcactctg
    31261 ccgactactc tgctcaggcg aaagggcatt gagtaaaaac ttcaattcat cggaggaaat
    31321 caaaacaggc tcaatctgtt tgtggtagat aaacgcaaaa atctcacagg cattgagatt
    31381 ttgcatatca tcaatcccta gccaaagctg ttcttctgtt tcttgcagcg gaatggctaa
    31441 atatcgcaat aaaatctgct tttcattgca atttttctgc cactgctctg ctgaaatctc
    31501 gatgaacctt tggctgttta aatccgttac cgaatactcc attttgattt cctcacctca
    31561 aattagccgt ttggtgtaac agttgtgcta cagaaattag ctggaaatag gctcgtatca
    31621 ttgccactac aacttgccgt ccaactaatc gtattatttg agaacgacgg tgttaaggta
    31681 tagccataac cattcagaga gcctttgccg gttaccgtaa tcacgccttt tgttaccgca
    31741 attgagttta ggtatttagt ggtattacta ctggttttat tcgcctgaat cccattcgtg
    31801 ccaccggagc agttatccaa cccgccactg ttgtaaatac agacttcaac gtctgattta
    31861 tacgaagcag atgcttgtaa taactccgat aacgccgcct tttgggtgta tgagttatag
    31921 gaagggatcg caatagtggc aagaatggca ataatcgcaa tcacgatcat caactcaatg
    31981 agggtaaatg cccgatgcag ttggcgaatg ccaagcggtc taaaatgtac aattttttgc
    32041 atataaattc cttataaatt gcaccaacaa attgtggcga atcaagtgtg caaatttttt
    32101 gcctgctttg cgaccggcaa attttaattt ttcgacgcag atcgaaaaaa taaaattttt
    32161 atctgtttat ccatacagtt ttttgttaga atttgccaaa tttactcaat taggaatcaa
    32221 gaatggcaaa agcacctaaa accgcttatg tttgtaacga ttgcggggct gaatattccc
    32281 gttggatggg gcaatgtaag gaatgtaagg cttggaatac catcagtgaa gtgcggttga
    32341 tttccagcaa agaagcggcg aaatctgacc gctttagcgg ctatgccggt gaaacgtcag
    32401 gcaaagtaca aacgctgtct gacatcagct tgcaggaagt gcctcgcttt agcagtggct
    32461 ttaacgagct ggatcgtgta ctcggtggcg gcgtagtgcc ggggtcagca attctgatcg
    32521 gcggtcaccc gggggcgggg aaaagtacgt tattactgca agtaatgtgc ggtttagccc
    32581 aacatctgcc aacgctgtat gtcaccggtg aagagtcgtt acaacaagtt gcaatgcggg
    32641 caaatcactt aggcttacca acggcaaatc tgaaaatgtt gtctgaaacc tctgtcgagc
    32701 atatttgcaa tattgcagat caagaaaagc ccaaaattat ggtgattgac tcgattcagg
    32761 tgatgcactt gtcggatatt cagtcctcac ccggcagtgt ttcacaagtg cgtgaatgtg
    32821 catctttcct tacccgctac gccaaaaccc gccaagtggc gattattatg gttgggcacg
    32881 tcactaaaga tggcacgctt gccggcccga aagtgttgga acacgccatc gatgcttcct
    32941 tgctgttaga aggcgaatcc gattcccgtt tccgtacttt gcgtagccag aaaaatcgtt
    33001 ttggtgccgt caatgaattg ggcgtatttg cgatgaccga acaagggcta aaagaggtta
    33061 aaaacccatc tgcgattttt ttaagccgta gcgaagagca aacgccgggc agttcggtga
    33121 tggtgttatg ggaaggaaca cgcccattgt tggttgaaat tcaagcctta gtcgatcact
    33181 caatgctggc aaaccctcgc cgtgtggcgg ttggcttaga tcataaccgt ttatcgctat
    33241 tacttgcggt gctacaccga cacggtggct tgcagatgtc ggatcaagat gtgtttgtaa
    33301 atgtggtcgg tggggtgaaa gtcacggaaa ccagtgccga tttagcctta attttggcgt
    33361 taatttccag cttccgtaac cgtccattgc cgcaagattt ggtgattttt ggggaagtcg
    33421 gcttagcagg ggaaatccgc ccggttacca gtgggcaaga gcggatcagc gaagccgcaa
    33481 aacacggctt taaacgagcg ataattcctc acggcaatgt cccgaaaaag gcaattaaag
    33541 atatgcaggt gttcaccgtg aaaaaactca gtgatgcgtt agatattctg tataatctct
    33601 aaaatcaaga accgcttgta agtctgtctt acaagcggtc tgttttaggt aaaaatttac
    33661 gaatgtgcgg cagttggtct attgcctttg gaaatatagt ataaattaat acacaccacc
    33721 aacgcattta agccggtgac cggaatcgag ccaatcagca aaccataaac aacgaaacag
    33781 gcacaaccca gcgaattcac cacccgcagt ttaatcacat cttttaataa aaaagaacag
    33841 gcaactaaaa tcatcgccac atagccgagt atttcaacat agtccattta gaacctcctc
    33901 aaataaaata aactgccgat attttaaagg ctgttttttt atttgtatct agctctaaaa
    33961 atagcaaagg tttgcgttca catttttact tttaaccgct tagttattaa acagattttc
    34021 gttctaaaca cataaaacgg caacggaaag ggttattttc atcaatttct gaccactttt
    34081 cttctactaa cgcccaattt tgttcatcaa attcaaagaa cgtatcccct tcaatgtctg
    34141 cttgaatctc agttaaataa agtctttctg ctagtggtaa ggcttgctta aacagttccc
    34201 ccccaccaat aatcattatt tcagctgtat ttgcaaaatt tttcgctaat tcaaccgctt
    34261 gttcgagcga ttgtaccgca taagcccctt ccaccgtaaa acctgaacgg gaaagaataa
    34321 tattagggcg ttttggcaat aacctgccga tagattcata ggttttccgc cccataatca
    34381 ccggtttgcc gagcgtgttt tggcgaaacc aggctaaatc taccggcaaa tgccacggca
    34441 tttggttatc tttgccaatc accttgttga ttgttcgggc aacaataatg ctgattttca
    34501 ttttttctcc tgttatgcaa attggtttga ttttatatca aattaagcgt gattttacac
    34561 cctaaaagtg atacttttgg caacattatt tttagttaca agtgaacaga ttatgtcaaa
    34621 aactatcgtg ataaaatttg gcaccagcac tctcacacac ggcactaaaa gtttaagccg
    34681 tccttatatg ttagagctgg taaagctcaa ttacaccaac agcatcgtgt gattgtggtg
    34741 acatccggag ctgccgctgc cggtcgggac tatttaggac accctgaact ccctaaaacc
    34801 ttagcctcta agcaaatgtt agcagcggtc gggcaaagtc agctcattcg agtgtgggaa
    34861 aatttattcg atatttataa tatccatatc gggcagatgc tcttaacccg agccgatctg
    34921 gacgatcgtg aacgtttcct caatgcccgt gatacccttg atgccctgct tgcacaaaaa
    34981 atcattccgg tgattaatga aaacgatgcc gttgctaccg aagaatttaa agtaggcgat
    35041 aacgataatt tatcggcttt agttgcgatt ttggctcaag cagatcagct ctatttatta
    35101 accgaccaag aaggcttatt cagtgccgat cctcgctcaa accctgatgc taaattgctc
    35161 tcggtggtgg aaaaaatcac gcctgaaatc cgccaaattg ccggtggtag ttcaaccggt
    35221 ttaggcacgg gcggaatgag taccaaaatt actgctgctg atattgctac ccgctccggt
    35281 gtggaaacca tcatcgcctc cggttctcgc ccaaatgtgt tagttgattt agcaaacggg
    35341 caaaacatcg gcagtaaatt tttagtccaa tctgaccgct tggaaggcag aaaacgctgg
    35401 ttatttgctg ctccgcaagt gggtgaaatt gtggtagatt tcggggcgga acaagccttg
    35461 cttcaacata aatcattact gccggtggga gtttctgcca tcaaaggcga atttactcga
    35521 ggtgaagtaa tcaaaatttt cagccaagac ggcaaagcct tagcactcgg cattgcccgt
    35581 tatagcagtg aggcattgct gcgaattaaa ggtaagaaat caaaagaaat tgaatcgctc
    35641 cttggttatg aatttggttc tgttgcagtg catagtgacg aaatggtggt gtattaatgg
    35701 aattgggaat tgatgtttta gcaatcttgt ttgccgttgc gacccttgcc ggctttatcg
    35761 atgccatcgc tggcggcggt ggcttactca ctattcctgc attaatggca gcagggcttc
    35821 ctccggcaat ggcacttggc acgaataaat tacaggcgtg tggcggatca ctctcttcct
    35881 cactctattt tattcgcaaa aaagctgtta atttaaaaca aatttggttg ctaattctat
    35941 gcactttttt aggctctgcc gccggtacta tttttgtgca aatgatcaat gtcgatttct
    36001 taaaaacatt gttgcctttc ttaattctga ttatcggcat ctattttttg gtcagcccta
    36061 aaattggcga tgaagatcgt aaacaacgca ttagctttac cctatttgcc tttaccgccg
    36121 ctgtcgctct cggtttttat gatggaatgt tcggaccggc aaccggctct tttatgactc
    36181 tggcatttat tttgctgctc ggcttcaacc tctctaaagc cgtagcacac gccaaagtga
    36241 ttaattttac ctccaacttt gcctcattaa ttttctttac gcttggtggt gcggtaatgt
    36301 ggaaaatcgg cttaattatg atggtcgggc aatttattgg cggcacacta ggtgcgaaaa
    36361 tggtgatgac aaaaggcaaa aaattaatcc gtccgatgct agtgactatg tcttttatga
    36421 tggtcggcaa aatgctctac gagcaaggaa tttttaatta acaatgaata aagcaaaacg
    36481 tattgagatt ttaacccgtt tacgcaatga aaatccaaaa ccgacaactg aactcaatta
    36541 cagtaatccg tttgaattat taattgccgt gattctatcc gcccaagcga ccgataaagg
    36601 cgtaaataaa gccaccgata agctcttccc tgtcgccaac acgccacaag cgattttaga
    36661 tttaggcgta gatgggctaa aagagtacat caaaactatc ggcttattta acagcaaggc
    36721 agaaaatatt atcaagacct gccgagatct gatcgaaaaa cataacggcg aagtgcctga
    36781 agacagagat gccctcgaag cccttgccgg tgttggcaga aaaaccgcca atgtggtgat
    36841 gaataccgca ttcggacacc ctacgattgc agtcgatacc catattttca gggtgtcgaa
    36901 ccgcacgaac ttcgctcccg gcaaaaatgt agttcaggta gaagaaaaac tgctcaaagt
    36961 tgtgccggac gaatttaaag tcgatgttca ccattggttg attttacacg gacgctacac
    37021 ttgcattgcc cgtaagcctc gttgtggttc ttgtattatt gaagatttat gtgagtttaa
    37081 agagaagacg gaataacatt atctggtggt atttaatgaa taactcccct ctttagaaaa
    37141 gtaggggctg ggggagattt gatactattt caacatttcg tatgagcgta tagaaattct
    37201 gccaaatctt ccctatcccc tctttgctaa agaggggaac tagatcgagc gtaaaatata
    37261 acaagcggtc atttttttga gattttttgc aaatggatat ttatttagtc ggtggagcag
    37321 tgcgggatca acttcttggg ctgccagtga aagatagaga ttttttagtg gttggcgcaa
    37381 ctgccgaaca acttttagcc caaggatttc aacaagttgg ggcagatttt ccggtgtttt
    37441 tacaccctga aaccaaagaa gaatatgccc ttgctcgcca agaacgcaag aacggcaatg
    37501 gttacaacgg ctttatttgc gatttctccc caaacgtcac gcttgagcaa gatttgatcc
    37561 gccgagattt aaccattaac gccatcgccc aagatgaaaa cagcacactt tttgatcctt
    37621 atggcggtgt gcaagattta gaaaatcggc tactccgcca cgtttctcct gcattcagcg
    37681 aagatccgct acgggtgcta cggattgccc gctttgccgc ccgttttcat tcatttggtt
    37741 ttaccattgc tcctgaaacc ctgaaattaa tgcgagagat ggtacaaagc ggtgaattga
    37801 aacatttaac cgctgaacgt gtgtggttgg aaacacagaa agcctttgaa accgataatc
    37861 cgcacgttta ttttgacatt ttacgcttaa ttggggcatt aaaagtgcta ttccctgaac
    37921 tggatcgtct gtttggcgta ccacaaccac ctcaacacca ccctgaaatt gactccggca
    37981 aacacactct aatggtgcta caacaggcaa aaagacttgc aaaaaaagcg gaaaatccga
    38041 ccgctttact ctttgcagcc ctttgccacg acttaggcaa aggcttaacg cctgctgata
    38101 ttttgcctca tcactacgga cacgaagtca aaggcattca accaacccga gagttagcca
    38161 atcggttaaa aatcccaact gagattaaag attttgccct tttagtgacc gaataccaca
    38221 cgcattgcca taaaatggcg gaacttcgcc ctgaaacggt aataaaactg tttaacagcc
    38281 tagatgtgtg gcgtaaacca aaccgctttt ttgatttcct gttcgcctgt gaagcggatg
    38341 ctagagggcg attaggtttt gaacagcgga attaccccca acctgaattg gcgaaaaaat
    38401 attaccaagc cgcaatcgaa attgatgtgc agcaagttat tcaagacggt tttgaaaaac
    38461 aagcaattcg ggaagagctg aataaacgca gagtgtatgc ggtaagaagc atcaagctag
    38521 atagcgacct aataaaccat taggttatcc gccactttct caaaatcaat tcccaaagtt
    38581 caagttggtt aaatgtatgg attctttaaa aggtggcgtt attttagtga atttataatg
    38641 ttcctatgct cttgattgtt gtagccacaa tttcagggta aagatcagca ataacccaat
    38701 gccgaaattg gcaatagtga agccggctaa cccaataaaa gataaaggtt caaattgata
    38761 aaattcaatc gcacctcttg ccattgcagc taaaccaaat gaaaatgccc agaaacccat
    38821 cgagaagcca ttttcagcta tccatttgag gtttcgtaaa ataaaacaga attgtaagaa
    38881 tccatatccc cataacattt ttgccaacaa gtctaattct ccacccatag aaaaataggc
    38941 agaagcgccc acaaatgccg gagcaagaac aattcctaaa gatggtctag caatcggaaa
    39001 aagcggacta agccgaattc tttgtaacat agtgggttca tatactaacc aggaaattat
    39061 gccaatgcct aaaaataaag atgcaatttc actgtagcca attaagctta atgaacttgc
    39121 catagtgaag ctccctgcaa ttggcggtag gtaatgtacc gggtgtagcg tttccggcaa
    39181 aaattgtgtg cctttccata atccaccaat aataaaaacc aagaaaatta aatgcacaat
    39241 gacgcctaaa aaaatcaata gttcgcctaa ataaaaatcc catacataga gcacatcacc
    39301 gcttatcatg gttgtcattg tcactaagga aaataaacaa cattgcactg ggtgcataaa
    39361 ttctgcttta atctgctcaa aacaaaaaaa cacacgatac acataacagc ctaataaggc
    39421 tacccaaagt atgactgacg ttccagcaat gatattacca attgttgtag cataaggagt
    39481 gataggcgtt gcatttaacc aggcaaggcc taacgccccc agccctaatg gcattgcaaa
    39541 aaagcctgta gttattggaa aaggtttaga ttcactcata aatttatcct catattgaaa
    39601 taatgcataa ctgtattcgg ctttataaca gtcatatgta aaaaatttta tttttctaac
    39661 cgcttgtaat aagaaaaacc taaagcactt gctttaggtt cctactacta ttcatactct
    39721 tctagccaga tagttaaaat cgcttcaaga atatgttcat ttgatgcttc cggatcatca
    39781 tcgaaatctt ccatttcaca aatccattta tgcatatctg taaaacgaac cgtggtcggg
    39841 tctaaatccg ggttcatatc atacagattt tcagcgatca ttcgggtatc tgtccatttc
    39901 attagtgcgc tgcctcattt gcgtgattta aattatattt tggaatttca acaaccaaat
    39961 cttcttcacc aacaatacat tggcaactta aacggctgtc tatttccaat ccccaagctt
    40021 tatccagcat atcttcttct tgatctgaag tatcatttaa cgaatcaaaa ccctcacgaa
    40081 ttaccacgtg gcaagtggta caagcacaag aacagtcgca agcgtgatga atttcaacgc
    40141 ctgcttcgtg tgctacttct aataaattat ctccggcttt agcttcaaca accatacctt
    40201 ccgggcaaaa ttcttcgtgt ggaagaaaaa caatttttgg cattttaaag tttccttatt
    40261 actaatccca ttcaatatta tccagatgtt cgccgatgaa gtttaaaatc tcttcctcat
    40321 tttcaaccag ataaacaata atcttcttta attcccttgc tttctcttta cttttctcgg
    40381 aaagcggata ggtaacataa taacatccta cgtccggatc ttcttctaat aactctaata
    40441 ggcttggacg ataaatacta agataagccc gtaaaaatgc agcccagtta taaccgttca
    40501 tataggcaac atcatattca gtattaatcc gctcgcccaa ctcaaaaatg cggttatcct
    40561 ctaaatcgaa ttcaaccgca acggttctga attgttctga aatctcggtt tttacatagt
    40621 tagacatact gcctccttat gctaaatcgt ccattttttt accggctaat gctttttgaa
    40681 ttgataaatt catacgccgt gctgcaaatt cttgcgtagc taaatccacc tctttgatac
    40741 cttgctgaat tgcaaagcga tcagtacctt cttttaattc gattaaacgg gctaattgtg
    40801 cttcaatcgc ttggaactcc tccacactca acactgcaga gccatcttct ttcaatgccg
    40861 ttaccacgct gtcaatcact cggtcggctt ctactcgctg ttcaactaac tggcgggctt
    40921 ccatatcttc tttggcattt gccattgagg atttaatcat ctgcgtaact tcttcatcgg
    40981 ttaagccata agacggtttg atttgaattg aagcctgcac tttggtcgat ttttccattg
    41041 cagtcacgtt taataaaccg tctgcatcaa cttggtaagt tacccgaacc tgtgcaaccc
    41101 ctgctgccat tgccggaatg ccacgcaaag tgattttacc gagagagcga caatcttcga
    41161 ctaattcacg ctcaccttgt aaaacgtgga ttgtcatcgc cgtttgaccg tctttaccgg
    41221 tagtaaactc ttgagctcga gctactggga tagtagtgtt gcgtggaata attttctcca
    41281 ccaaaccacc catcgtttca ataccaagcg aaagtggcac aacatcaagc aacaacatat
    41341 cggaatccgg tttgtttcca actaaaatat ccgcctgcac tgccgcacca atggcaacaa
    41401 ctttatccgg gtcgatagag gttaatggcg ttttaccgaa aaactcgccg acttgttcac
    41461 gcacaaacgg tacacgggtc gaaccgccta ccattaccac ttcacgaacc tcttctgctt
    41521 caactccggc atctttcaag gctcggcgac aagtcatcag cgagcgtttt acaagcggtt
    41581 gaattagctc attaaattgc gaacggctta ctacgcctgt ccaatttgca aatttcactt
    41641 caaattcaac cgcttgcgaa agtgcgactt tggtttgagt tgccaaagtt aataattcac
    41701 gctgctcgct tgccgtttga ggtttgtaat ttgcctgttc agcaatccat tccgctaata
    41761 ggtggtcgaa atcatcgcca ccgagtgcgg tatcacctgc ggttgctaat acttcaaaca
    41821 cacctttgcg taaacgcaaa atagataaat cgaaagtacc gccacctaaa tcgtaaacgg
    41881 caatcacacc ttcttgtccg ctttctaaac cataagcaat cgctgctgcc gttggttcat
    41941 tgagcaaacg taatacattt aaacccgcaa gacgtgcggc atctttggta ctttggcgtt
    42001 gtgcgtcatc aaaataagcc ggtacggtaa ttaccacgcc tgaaagctca ccggctaaac
    42061 gcttttcggc aaattgtgcc aagtggctta aaatatccgc cgaaacttca atcgggcttt
    42121 tattaccttg cgctgtttgg attaaaggta aaccgttttc gctcgcgaca aattgataag
    42181 gtaaattttg ataacgttgc tgaacatctg ccagagaacg cccaatgaga cgtttagctg
    42241 aaatgacggt atttttcggg tcaagtgcag ctttggcaaa ggcttcaatc ccaactgttt
    42301 tttctgtttc cgcataatgc actactgacg gcactaatgc tctttcttgt tcatcaagca
    42361 atacctgagt ctgcccgcta cgcacagttg ccactaatga attggttgta cctagatcaa
    42421 ttcctaccgc taatttatgt tgatgtggtg cagcggtttg accgggttca gaaatttgta
    42481 ataatgccat ttatttatct ctttatcttt ctaacttagt tctctattgt attaaatgga
    42541 gtgaaatata ttgtttaaga gaagctggag attcccctct ccctgatttt tcttctgaac
    42601 gaagaaaaat ctatccctct cccacaaggg gagagggtta ttctttcaaa aattcaaaac
    42661 aactaaaaaa ttagcattct ccttttgtag gagaaaatgt tgttctttca aaattctaaa
    42721 ataaccgcaa aattaactct cgccccttgt gggagagaga cagataaatc attcgttcag
    42781 aatgatttat cagagagagg gggaattacc ctctcgtaat ttcataaaaa attgtatcta
    42841 aaacagcctc tagatcgcta tgaatttgat tattccaaaa tcttaaaacc ctgaacccct
    42901 gaccgtttaa aaaatgagtt cgtagattat catagttttg ttgatctaaa tgttgtgaac
    42961 catctaattc aataactaat ttcgctgaaa agcaaacaaa atcgacaata tagttaccta
    43021 taacttgttg ccgtttaaat tttatcgcta aaaatcgttt tgctcttaat gcttgccaaa
    43081 gaaccttctc tgcttctgtc atattagtcc gaagctgttt agctctttgg cataa
//
LOCUS       DANLVT010000005        42058 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.005, whole genome shotgun sequence.
ACCESSION   DANLVT010000005 DANLVT010000000
VERSION     DANLVT010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 42058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 42058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..42058
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.005"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            234..530
                     /locus_tag="PXC99_000237"
     CDS             234..530
                     /locus_tag="PXC99_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HDL5416734.1"
                     /translation="MTAITIPQFEEVTSKQFQSEFGRIVDIVKGKTPVAITQYGRPTM
                     VLFPYDQAVEARRLLAKQRLLEMLAERDKNPPAALAEITLEELDKMIDEERNAL"
     gene            520..936
                     /locus_tag="PXC99_000238"
     CDS             520..936
                     /locus_tag="PXC99_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative toxin-antitoxin system toxin component,
                     PIN family"
                     /protein_id="HDL5416735.1"
                     /translation="MHSDYLVIDTNILISGLLFPKSNPNLAVKKALLGYTICVSQATF
                     DEFLEVSARPKFAKYFSIQEREEFIANLLDAVKFVEIKETITDCQDPKDNKFLEVAIS
                     AKAKYLVTGDKKDLLSMNPYRNVEIISVSEFLAETR"
     gene            936..2594
                     /locus_tag="PXC99_000239"
     CDS             936..2594
                     /locus_tag="PXC99_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhnD/SsuA/transferrin family substrate-binding
                     protein"
                     /protein_id="HDL5416736.1"
                     /translation="MKRFLTLFLLLFSSFSLAETHQIGILAQRGEAYTRTHWQPWVDW
                     LNSQFPNERFELVPLGINEASRRAELDFLLTNQAQFFYLSNQNVRWLATLNSPFSANG
                     EQGAVGSSIWVRADSHYQQLSDLKNQTISAVDNDAFGGFLLGLYQFHQAGMRQNRDFS
                     VQFSGFPVENALALLAEKQVEAAIVPVCLLEELEKEGKFKRSDFRLILQNPQAQGCLA
                     STPLLPNWSLAAMENVPNELAVQLATRLLNSHNPDLPRWTLPFSSAQADHILRELYRH
                     PQQKSLWATVLDWVRLNKFGLLAVVLFILLNLVALRYQVYRKSKALQQAHCKMQQYQQ
                     ELTRADRLALLGEMTTGFAHELKQPLSAVRMYAEGLKSQNSDPYQQRILDKLIAQVDR
                     AVKTMQSIRDWAQNRPSGEPQAVILNQLITNVIEFVAVENRQNAQISLIADRTFRLNL
                     HATVLEQVLTNCLLNALQAGASEISVRLQAVENGLEIAIEDNGGGFSPAQLEFPFVPF
                     RTDKPHGLGLGLVLCQRLMQSLNGRIVLANGENGAKVVLLLPQI"
     gene            2680..3327
                     /locus_tag="PXC99_000240"
     CDS             2680..3327
                     /locus_tag="PXC99_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDL5416737.1"
                     /translation="MIIHILDDEESILDAMSFLLAPLGVEIQTWQSSLDFLAQADLHR
                     QGVLLLDIRMPLPDGQQVHQQLREAQSTLAVVIMTAHGDVPMAVAELKKGAVDFLQKP
                     ASFEQLKQAIAQAEKVSEKAVKIREISQNYAKLTEKERNLVPLIMQGFTNKQIADKLA
                     ISVRTVEVHRANVMEKMQAESLAGLVQMIGELQYKGSGNCSATFSFDFCRINLLL"
     gene            complement(3311..4249)
                     /gene="ttcA"
                     /locus_tag="PXC99_000241"
     CDS             complement(3311..4249)
                     /gene="ttcA"
                     /locus_tag="PXC99_000241"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005634611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HDL5416738.1"
                     /translation="MTDDIQKSDKKITYNFNKLQKRLRRNVGNAIADFGMIEEGDRVM
                     VCLSGGKDSYTLLDILLNLQQSAPVNFSVVAVNLDQKQPGFPEEVLPRYLESIGVEYK
                     IVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDMLATLF
                     LNMFYGGKMKSMPPKLISDDGKQIVIRPLAYCKEKDIIKYAEAKQFPIIPCNLCGSQP
                     NLQRQVVKEMLNTWDRQYPGRLETMFSALQDIVPSHLCDPKLFDFKGIKHGQTIEGIE
                     GDTAFDDVKIEAKTFLYEDDDNNFAEAGMIQFKEVN"
     gene            complement(4312..5025)
                     /gene="ubiG"
                     /locus_tag="PXC99_000242"
     CDS             complement(4312..5025)
                     /gene="ubiG"
                     /locus_tag="PXC99_000242"
                     /EC_number="2.1.1.222"
                     /EC_number="2.1.1.64"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-polyprenyl-6-hydroxyphenol
                     methylase/3-demethylubiquinol 3-O-methyltransferase UbiG"
                     /protein_id="HDL5416739.1"
                     /translation="MQNVDQQEITKFENMAKTWWDPNGSFKPIHLLNPLRLAYILEKS
                     NGLFGKKVLDVGCGGGILSEAMAKQGAIVTGIDMTSQPLEVAKQHAKESGLEIDYQQT
                     TIENFLAKMTACNQEKFDVITCMEMLEHVPDPLSIIQSCKALLKPDGVLFFSTINRTF
                     KAYMLVIIGAEYVLKMLPKGTHEFEKFIKPAELLAWCDQADLRCQEMRGYHFNPLTEK
                     FWLNNDVSCNYIATLKPNN"
     gene            5090..5470
                     /locus_tag="PXC99_000243"
     CDS             5090..5470
                     /locus_tag="PXC99_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine dimer DNA glycosylase/endonuclease V"
                     /protein_id="HDL5416740.1"
                     /translation="MTRINLVPPTELCDQHLLAEHRELTRIPNAVAKGKFSLKGQPED
                     YKLGEGHVRFFFNKLTFLKKRYDALHEECLARGFKVQYFWAEHLPQDPSLWLDYQPTE
                     TALTVNRERIALRMPANPRFSERK"
     gene            5567..8263
                     /gene="gyrA"
                     /locus_tag="PXC99_000244"
     CDS             5567..8263
                     /gene="gyrA"
                     /locus_tag="PXC99_000244"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HDL5416741.1"
                     /translation="MSELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPV
                     HRRVLFSMDQNSNTYNKPHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYML
                     VDGQGNFGSIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLP
                     TKIPALLVNGSSGIAVGMATNIPPHNLGEVLDGCLAYIENEQISVEELMRYIPGPDFP
                     TGAIINGRKGIEEAYRTGRGKVYVRAKASVETTDKGREQIVVTELPYQVNKAKLIEKI
                     AELVKEKKIEGISKIDDYSDKKGISIVIEVKRDAVGEVVLNHLYSLTQMQVTFGINMV
                     ALDNGQPKVLNLRQIIEAFVKHRREVVTRRTIFELRKARERAHILEGLAIALANIDPV
                     IELIRASKTAEEAREGLLARPWALGNVAPMLEAAGVGASRPEDLPEHLGVRDGEYYLS
                     EAQARAILELRLHRLTGLEHEKIVEEYKELLTEIGELIHILTSPERLMEVIREELERV
                     KTDFNDERRTEITAASGDINIEDLIAQEDVVVTLSHAGYVKYQPLSDYEAQRRGGKGK
                     SATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQLPQASRGARGTPIVNILPL
                     VKEENERITAILPIPNGEFSADKFIFMATASGVVKKVSLDAFSNVRASGLIALKLREG
                     DELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAMGRTATGVRGIKLSTTEISSEEIE
                     EAEIIETDNEEAEDSSSVSLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKS
                     RATKGVVSIKVNERNGKVVAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVR
                     IIRTAEDEQVVSLERVCEPEDDENESLDALENAETAETSTEE"
     gene            8358..10322
                     /locus_tag="PXC99_000245"
     CDS             8358..10322
                     /locus_tag="PXC99_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5416742.1"
                     /translation="MALINLSNAYLGFGDHPLLDHTELHIEPGERVCLVGRNGAGKST
                     LMKILAGEVQLDDGKLVFEKDIVVTRLEQDPPRHIEETVFDYVAEGIAHLADLLKQYH
                     HISLQMQTDYSDELLAKLSAVQSQLEHANGWQFENRIQDTLKLLELAPDKRLCELSGG
                     WVRRAALARALVADPDVLLLDEPTNHLDIEAIAWLENLLLDFKGSIIFISHDRAFIRK
                     MATRIVDLDRGKLVSYPSNYDKYLEEKAEDLRVEALQNELFDKKLAQEEVWIRQGIKA
                     RRTRNEGRVRALKALREERRNRREVQGTAKIQIDNTARSGKIVFEVENAGYEIGGRTL
                     LKNFSTTILRGDKIALIGANGIGKTTLIKLLLGEIQPTSGSVRCGTKLEVAYFDQYRV
                     DLDPEKTVMDNVADGKQDVEVNGVKRHVLGYLQDFLFPPKRAMTPVKALSGGERNCLL
                     LAKLLLKPNNLLILDEPTNDLDVETLELLEEMLTDYQGTLIIVSHDRQFVDNTVTECY
                     FFEGEGVVNKYVGGYFDAKQQQENYFAATADKRLNSSKNLQKIEEKAPLAEQEKQKAD
                     QEKTKAEPTKKTKLSYKEQRELDELPAKMEQLEADIEALQAEVNSAEFFAKDPSYTNA
                     QLQKLADTEAALEQAFERWEALENIKNGNI"
     gene            10404..11162
                     /gene="tcdA"
                     /locus_tag="PXC99_000246"
     CDS             10404..11162
                     /gene="tcdA"
                     /locus_tag="PXC99_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HDL5416743.1"
                     /translation="MTERLDNYEQRFGGIGRLYTPEGLEKLRRSHICVIGIGGVGSWA
                     VEALARSGIGKITMIDMDDICVTNINRQIHAMSGTVAQLKTEAMKERIERINPECVVE
                     IIDDFLTQDNLADYLNRGYDYVIDAIDSLRVKAAMIAFCKRNKIKIITTGGAGGQTDP
                     TKIQITDLSKTVQDPLAARVRSLLRKEYGFSNKNKFGVECVSSTQQLIFPQMGEACEV
                     SATMNCANGFGAVTMVTATFGFFAVSRVIDKLLK"
     gene            11209..12576
                     /locus_tag="PXC99_000247"
     CDS             11209..12576
                     /locus_tag="PXC99_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LOG family protein"
                     /protein_id="HDL5416744.1"
                     /translation="MAIHRVNPKGSMEQLSHLEMELLAKNTQGNLHQLYRNCSLAVLN
                     SGVHTDDSRALLSQYPDFEIRLLTREKGVSLELHNPPETAFVDGKMILNIQYHLFAVL
                     RDIVFVNALKNAIRPLEETSLEALTTNTVFSILRNAKAIEMNTDPNLVVCWGGHSINE
                     TEYQYCRAVGQEFGLRELNIVTGCGAGVMEAPMKGAAIGHANQRYKNGRFIGITEPSI
                     IASEPPNPIVNELVIMPDIEKRLEAFVRLGHAIVVFPGGPGTLEELLYIIGIKLNPAN
                     HAQQLPLILTAPKESADYFYAIDQFIGETLGEEARSLYEIIIDDSVLVARKVKQAMIE
                     VKSSRYESGDAYNFNWSLKIEEDFITPFIPTHENMANLNLSLAQPKEQLAANLRRAFS
                     GIVAGNIKPETSDLIEKYGVFKLHGDRKLMEHIDKLLERFVVQHRMKIPTGEAYQPCY
                     EIVKG"
     gene            12596..14143
                     /locus_tag="PXC99_000248"
     CDS             12596..14143
                     /locus_tag="PXC99_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent endonuclease"
                     /protein_id="HDL5416745.1"
                     /translation="MYLKHIEISGFRGINHLSLQLRPNMVLIGENAWGKSSLIDALSL
                     IFNLEQALYQFQFKDFHIQYTDTPNQVRDIQLVFTFCEEHQHDLAVQFPAYLAQAAFY
                     IDNHRCVSLAVTGKLHGEQISTDYQFVDQSLKPIQIEQAENAIRQFIYHHPVYRLRDA
                     RLNNRVHNELLLKGSSQLEDDFQRELNALSSLLKYYFLTSQSRYLIKTSMQDTALWWE
                     KVKSLCLRLKQQPELVESAQQHISTLFLFNPRSTVIEKPIILFEDLNAQLHPRMIAIF
                     WELLGFLPSQRITTTNSIELLSQVPLREICRLVRHHDHTQAYWLERHSLGKEDLRKLT
                     FHIHHNRGLALFAKAWILVEGETEVWILQELARLLDIHLEMEGIKIVEFAQCGLRPLI
                     KYARAMGIEWYVLTDGDDSGKRYADTVKSMEEDFAHRLTMLPQKDIEHFFYKAGLRNV
                     FIQLANWRSQEKYPVSYIIKRAIQRSSKPDLAIALANEMGQRGEHSIPTLFKQLFADV
                     LALINKV"
     gene            14366..15400
                     /gene="metN"
                     /locus_tag="PXC99_000249"
     CDS             14366..15400
                     /gene="metN"
                     /locus_tag="PXC99_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein
                     MetN"
                     /protein_id="HDL5416746.1"
                     /translation="MIQLKNISKQFEVKGKKITALDNVNLEVPRGTIYGVIGASGAGK
                     STLIRCVNLLERPTIGQVIVDGQDLTAMSDKELIHARRNIAMIFQHFNLLSSQTVFEN
                     VALSLRLSNTPKEQVEKKVNELLDLVGLTDRKDVYPANLSGGQKQRVAIARALASDPH
                     VLLCDEATSALDPATTQSILQLLKDINKRLGLTILLITHEMEVVKRICDRVAVIDKGQ
                     LIESGSVSEIFSNPKTELAQKFIQSTFHFELPQEYTEQLSSSPTEHSKPIIKFEFTGR
                     SVDAPLLSMASKKFGIDFSILMSQIDYAGGVKFGFVIAEVSGNPDSIAEAKFYLIDNN
                     VKVEVLGYVG"
     gene            15390..16067
                     /locus_tag="PXC99_000250"
     CDS             15390..16067
                     /locus_tag="PXC99_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5416747.1"
                     /translation="MWADFMQEMTPQMWSLVWESTFETVYMGFVATALAVVIGLPIGF
                     LAFLTGKGEILENPRLHQVLDVVINIGRSIPFIILLIILLPFTRLVVGTTLGTTAAIV
                     PLSVSAIPFFARLTSNALLEIPSGLTEAAKSMGATNWQVVTKFYLPESLPILINGITL
                     TLVALIGYSAMAGAVGGGGLGNLAISYGEHRNMVYVKWIATIIIVAIVMISQKLGDHL
                     AKRYDHR"
     gene            16090..16923
                     /locus_tag="PXC99_000251"
     CDS             16090..16923
                     /locus_tag="PXC99_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family lipoprotein"
                     /protein_id="HDL5416748.1"
                     /translation="MSFKKILGVALVSALALTACKEEKKAESTAAPAAQAPAKIKVGV
                     MSGPEHTVAERAAQIAKEKYGLEVEFVLFNDYALPNTAVSKGDLDANAFQHKPYLDKD
                     SQSKGLNNLVIVGNTFVYPLAGYSKKVKNVSELAEGAVIAVPNDPSNLARALILLEKQ
                     GLIKLKDNTNLFSTSVDIIENPKNLKIKEVDTSIAAKALDDVDLAVVNNTYAGQVGLN
                     TQDHGVFVESKDSPYVNIIVARQDNKDAANVQNFIKSYQTEEVYQEAQKHFKDGVVKG
                     W"
     gene            17006..17836
                     /locus_tag="PXC99_000252"
     CDS             17006..17836
                     /locus_tag="PXC99_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family lipoprotein"
                     /protein_id="HDL5416749.1"
                     /translation="MNFKKLLGVALVSALALTACKDEKAQAPATTAKTENKAPLKVGV
                     MTGPEAQMTEVAVKIAKEKYGLDVELVQFTEYTQPNAALHSKDLDANAFQTVPYLEQE
                     VKDRGYKLAIIGNTLVWPIAAYSKKIKNISELKDGATVAIPNNASNTARALLLLQAHG
                     LLKLKDPKNVFATENDIIENPKNIKIVQADTSLLTRMLDDVELAVINNTYAGQAGLSP
                     DKDGIIVESKDSPYVNLVVSREDNKDDPRLQTFVKSFQTEEVFQEALKLFNGGVVKGW
                     "
     gene            17888..18679
                     /gene="metQ"
                     /locus_tag="PXC99_000253"
     CDS             17888..18679
                     /gene="metQ"
                     /locus_tag="PXC99_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter substrate-binding
                     lipoprotein MetQ"
                     /protein_id="HDL5416750.1"
                     /translation="MKIMKLAGAVAIFSLFLTACNDKAEKLKVGVISGPEHKVMEVAA
                     KIAKEKYNRDVELVVFTDYATPNAALDKGDLDLNAFQHKPYLDNQIQEKGYKLVPVGN
                     TFVYPIAAYSKKIKSLAELKDGDTIAVPNDPTNLARALILLEKQDLIKLRADAGLKAT
                     SVDIIENPRKLVIQEIEAPLLPRTLDDVAFSIINTTYAGQNGLTPTKDGIFVEDKDSP
                     YVNLIVARENNQHSEAVKDLVKAYQTEEVYNKANEEFKGAMIKGW"
     gene            complement(18724..19875)
                     /gene="metK"
                     /locus_tag="PXC99_000254"
     CDS             complement(18724..19875)
                     /gene="metK"
                     /locus_tag="PXC99_000254"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018356717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HDL5416751.1"
                     /translation="MAINLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACET
                     YVKTGMALVGGEITTSAWVDIENLTRQVICDIGYTHSDMGFDAHSCAVLNAIGKQSPD
                     INQGVDRADPLEQGAGDQGIMFGYATNETEVLMPAPITYAHRLMEQQSKVRKSGKLDW
                     LRPDAKSQLTFAYENNKIIGIDAVVLSTQHAEHISQKELIEGVMEEIIKPVLPSEWLS
                     QNTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAA
                     YAARYVAKNIVAAGLADRCEIQLSYAIGVADPTSIMVETFGTGKVSNEILVKLIYQNF
                     DLRPYGLIKMLDLIKPIYRETAAYGHFGRKHFPWEKTDKAEALRAGAGL"
     gene            complement(20058..20900)
                     /locus_tag="PXC99_000255"
     CDS             complement(20058..20900)
                     /locus_tag="PXC99_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin family protein"
                     /protein_id="HDL5416752.1"
                     /translation="MKVGLVLEGGGLRGIFTAGVLDVFLDEHIHIDGAIGVSAGALFG
                     VNLPSKQKGRALRYNKKYAKDKRYMGLHSLLTTGNIVNRDFAYYELPSKLDPFDQQAF
                     EDSGMDFWVTVTNVETGEPEYIKIDNVFEQMEAFRATSSMPIVSKIVEIEGKKYLDGG
                     VSDSIPVQKFIEMGYDKIIVVLTRPLEYRKKPSSMWLFKRFYKKYPKLVQRWENRYAE
                     YNQAVEQIIQLNEKQQIFVIRPSRTVKISRLETDVNKIQAMYDLGVEDAKNALAGLRA
                     YLAK"
     gene            20960..21277
                     /locus_tag="PXC99_000256"
     CDS             20960..21277
                     /locus_tag="PXC99_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HDL5416753.1"
                     /translation="MADAEFMDFLLDQLSPISGLRSKKMFGEYCLFFDNKIVAIISKD
                     YRIFVKANPQTLPLFLAENAEQFHYFAKGKVQKMHYWSIPELAIEEADELVKWIRLGL
                     QAV"
     gene            21368..22081
                     /locus_tag="PXC99_000257"
     CDS             21368..22081
                     /locus_tag="PXC99_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease"
                     /protein_id="HDL5416754.1"
                     /translation="MNQKKLVSLIVVIVLAIISQIFSFFDKKEPSKAQEKSTQSSQSH
                     QVSTSSLGNYDVQMKNDRLKQHIVDTDYYTLALSWSPAFCQKQKRNNHGKIPSHLEYQ
                     CGGSADFGWVIHGLWPQSGKARSVDEHPRYCQGDLPMVAEQTIKQYLPESPGATLLQG
                     EWEKHGACAFNQADDYFAKQKELFNQLKLPDTEMSKLALFNWMRANNPHLQNVYLGGS
                     KDELYICYDKAFQPMDCPR"
     gene            22081..22575
                     /locus_tag="PXC99_000258"
     CDS             22081..22575
                     /locus_tag="PXC99_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HDL5416755.1"
                     /translation="MADLRQLKMQVQRQLKRDLERANHYFNTTFTPPSISYAVRGVKA
                     GVAYLERNEVRFNPVLLQENEQAFIRQVVPHELAHILVYQHFGRVQSHGKEWKMMMET
                     VLGVPAEIYHCFDTQSVQQQFSYQCACQTHQLSIRRHNAVMRDKKSYICRLCKTQLHF
                     VEKS"
     gene            22680..23960
                     /locus_tag="PXC99_000259"
     CDS             22680..23960
                     /locus_tag="PXC99_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDL5416756.1"
                     /translation="METIVIVGGGAGGLELATYLGNKLGRKQKAKVVLIDRNATHLWK
                     PLLHEVATGTIDEGTDALSYRAHAKNHSFEFQQGTLVAVDREKKTVSLAPIYNDQNQL
                     LVKERHISYDKLVIAIGSKSNDFGTKGVAENCIFLDGSEQAKDFQKRMMELFLRFSHS
                     ENKDVKIAIVGGGATGIELSAELYHVVKNLNSYGFGKLNRASLKVTLIEAGPRLIPAL
                     PEKVSVSAFHELKKAGVSVRLGTMITEARPDGLMTRLGEKIEADIMVWAAGVKAPEIT
                     REFGFETNRLNQIEIKDTLQTTVDESVFVIGDCASLIQDGKPIPPRAQAAHQMATRCG
                     KNIVALIEGKEMKPFRFNDKGSLLSFSKFGTVGNLMGNLVSGDMFIEGKIARLAYLSL
                     YRMHQVALHGCVKTGLIVLVGQINRFLRPTMKLH"
     gene            complement(24047..25084)
                     /locus_tag="PXC99_000260"
     CDS             complement(24047..25084)
                     /locus_tag="PXC99_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5416757.1"
                     /translation="MNVLKLISLKSILIASGIFLSAQAAQAEGRLTVYCSVQNNVCEE
                     MTKQFSHKYNVETKFIHGGTGTIFGKVKAEASNPQADIWYGGTIEPHFQAGELGLLEA
                     YRSPKQAEILPQFKSLVESEQGKFTSIVYMLVLGLGVNTEKLAKLGIEAPKKWEDLSD
                     PRLKGEVQLPDPRSSGTTYTFMTTLSTLWGEEKTFDYLKKLNNNVSQYVKSTLVTSNL
                     ARGESAVTVGFVHSYATEKEKGAPIEAIIPEGKVGYALGGVSIIKNARNLDNAKLFMD
                     WVLSKEAQEIPWKKHGVYQTPTNINAEVAPQSTKAEALDFVEIDYQKAGSSEEGKRLI
                     DKWLAEIKLAN"
     gene            25306..26004
                     /locus_tag="PXC99_000261"
     CDS             25306..26004
                     /locus_tag="PXC99_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HDL5416758.1"
                     /translation="MENSWKYAFKLITPIFMGYFAAGVAYGMLATNAGMPAWFTIVMS
                     FTVVSGTAQYAAIPFFVSGVGAVSVFLSTLLMSLRFSFYTLNMMEHKPISKAKSLVAI
                     AGLTDEGFAVLSSLPKEQKQALFLKIAVLCVAYWTFSTIVGVLLGDSVANYIPHLDFA
                     LPCLFAILAYEQYKNQKQWKPIVIALIGFLLARQITETSVLLVAILVAIVIVALLPQS
                     SSIKLEKGVENEHK"
     gene            26015..26317
                     /locus_tag="PXC99_000262"
     CDS             26015..26317
                     /locus_tag="PXC99_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HDL5416759.1"
                     /translation="MFAALVLGSQICRFLPEFLPKKVLSSPILQKLNKMLPLVIMLLL
                     LLTSLNFPKNGEGFNLILAQILALIGVLGSYVWLKNTFLSVALGIFGVNVFLSLLG"
     gene            complement(26438..27739)
                     /locus_tag="PXC99_000263"
     CDS             complement(26438..27739)
                     /locus_tag="PXC99_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDL5416760.1"
                     /translation="MSLFKFEERGSNARQEIIAGLTTFLAMVYSVIVVPGMLSQAGFP
                     AESVFIATCLVSGLGSILIGLWANAPMAIGCAISLTAFTAFSLVLGQQVSIPVALGAI
                     FLMGVVFTLISATGIRTWILRNLPSSIAHGAGIGIGLFLLIIAATNVKLVVNSGMDIP
                     VKLGDFTSFPVLVSLIGLAAIIGLEKLKVKGSILWVIIAITIVGLIFDPNVKYTGFFK
                     MPSFGENSQFLNLDIMGALNTAILPVVFALVMTAIFDATGTIRAVAGQAGLLDKDGQI
                     INGDKALTSDSFGSILSGLFGTAPAAVYIESAAGTAVGGKTGLTAVVVGIGFLFMLFF
                     QPLAFLVPSYATAPALMYVGLLMLSNVSKLDFSDFVGAMSGLVCAVFIVLTANIVTGI
                     MLGFATLVIGRLISGEANKLNLGTVIIAIILVAFYAFDLAI"
     gene            complement(27872..28846)
                     /gene="secF"
                     /locus_tag="PXC99_000264"
     CDS             complement(27872..28846)
                     /gene="secF"
                     /locus_tag="PXC99_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HDL5416761.1"
                     /translation="MAIENVQQDVAEIKLPYKLIPFMKYRYVGFIFSLIVTALCIFTI
                     ATKGFNWGLDFTGGTVIETQFSQPADLAKLRTELENSGYGNALVQTTGSQKDLMIRLA
                     ASAGDMSVGNKVMEMIHQKLDPNATIKSIEFVGPNVGEELTQGAIYATLATLAMLLIY
                     VGTRFEWRLAVGGIVALFHDVLVTIGIFSFLQIEIDLTFVAAILSVVGYSLNDSIVVF
                     DRVRENFSKVRRSSSIEIIDISLSQTLSRTLMTSVTTLFVVLALFYLGGPTLHSFSLA
                     LLIGIGFGTYSSIYIAIGVALQLGLKREHMVQPKVEKEGADQDAFIDY"
     gene            complement(28856..30697)
                     /gene="secD"
                     /locus_tag="PXC99_000265"
     CDS             complement(28856..30697)
                     /gene="secD"
                     /locus_tag="PXC99_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HDL5416762.1"
                     /translation="MLNRFPLWKNLMVIFVIAIGALYALPNLYGDDPSVQISGTRGQQ
                     ATPETLSQVQSTLSAMNIQPKSAVLENGSILVRLESSEQQLPAKEKISEALGNNYSVA
                     LNLAPATPQWLSDIGGSPMKRGLDLLGGVRFLMEVDMNTALAKQQDTLQDSLRSDFRK
                     EKLQYQAVKKGENFATEVEFADNDTAEKAVRLVRLSHPTLDILVNDNKVTLTPSAQAL
                     SESRTMAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATA
                     TLEFRLVNTEANVASAAKGIVPADSGLQNTRDGEPVVLRRKPSLGGEHIIDATSGTDE
                     RGLPQVSIRLDTEGGEMMGEITKMAIQKPMATLYTEFKDSGRKDANGKVILEKHQEVI
                     NVATIQTRLGNQFQITGINSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVK
                     QGMEASILGLGLTILFCLAFYKVFGIFASLALIVNMILTIGLMSLIGATLTMPGIAGI
                     VLAVGMSVDANVLIYERIKEEIRNGRPIQQAIHEGYNGAFSSIFDSNLTTILTSLVLY
                     GVGTGPVKGFAVTLALGVIISMFTAITGTRMLVNWVYGGKRVKKLWI"
     gene            complement(30737..31030)
                     /gene="yajC"
                     /locus_tag="PXC99_000266"
     CDS             complement(30737..31030)
                     /gene="yajC"
                     /locus_tag="PXC99_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HDL5416763.1"
                     /translation="MQQGGGMEMIFILIIFGAIFYFMIYRPQAKRQKQQRDLLASLTK
                     GDEVLTSGGLIGKITKVTADNDNIVIALNDTTEVTIKRDFVVAVLPKGSLKSL"
     gene            31231..31788
                     /locus_tag="PXC99_000267"
     CDS             31231..31788
                     /locus_tag="PXC99_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtfJ family protein"
                     /protein_id="HDL5416764.1"
                     /translation="MKKLFAQAVIFGAFFASSAFAHNVQLNQALPAVSVAKDGELAVA
                     GGKVSYKNWHSSSLAGKVRVIHHFAGRSSVKEKNEDLMTAIKNAGFDRSKYQTVTIVN
                     ADDAIVGTGVFVKNSVENGKLDNPHSQVVLDQQGSVKKAWGLKEKESFIAVLDKSGKV
                     QFTSEGKLSAKQIQEVIGLVKTLTQ"
     gene            complement(31829..32797)
                     /locus_tag="PXC99_000268"
     CDS             complement(31829..32797)
                     /locus_tag="PXC99_000268"
                     /EC_number="5.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-epimerase"
                     /protein_id="HDL5416765.1"
                     /translation="MKLFTLENAFLRITLSDVGASWLSCIVKMPNEEREVLVTTSAKN
                     WQKQTAFFGATIGRYANRIANAEYRLNGKTYQLAKNNGEHNLHGGELGADKIVWQLES
                     QSEQAVKFSYFFADGEEGFGGEVKAFVEYRLTENELQISFDAVANQDTPLCLTNHAYF
                     NLQGSETILDHELIINADGYLPVDASGIPNAPLKKVESTSFDFRNAKKIGQDLLADDD
                     QKAVKGYDHSFHLAKNSENPTACLAVEDLKMELRTSMPALQLYTGNWLKGQPNLTKGE
                     YEDYAGVALEPEFFPNSLNQPELLQFGGITKAGEEYHHTISYRFII"
     gene            complement(32923..34086)
                     /gene="galK"
                     /locus_tag="PXC99_000269"
     CDS             complement(32923..34086)
                     /gene="galK"
                     /locus_tag="PXC99_000269"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HDL5416766.1"
                     /translation="MKPQEIALQQFEQHFGYKAERTVFAPGRVNIIGEHTDYNDGFVM
                     PCAINYGTAVSFAKRSDNKWRVFAIDLNQQDEFDLSQAIEPSEQKWANYVRGVVKFIQ
                     AKHPEFKQGADLAITSDVPMSSGLSSSAALEVSIGKTAQLLGDLPLSLPQIALIGQEA
                     ENKFVGCNCGNMDQLTSALGQQDHLVMIDCRSLEITPTPVPQGYSIAIINSNVKHDLV
                     TGEYNSRREQCEFAAHFFGKAKLRDVTAEQFIERASELSEENELAYKRAKHIISENQR
                     VLEAVEALKANDMVKLGELMAQSHDSMRDDFEITCPEVDCLAEIAQQAIGKNGGARMT
                     GGGFGGCVVCLVPNDKVEDLRQAVANNYEKQTGIKETFHVCTASDGVRECPAR"
     gene            complement(34096..35142)
                     /gene="galT"
                     /locus_tag="PXC99_000270"
     CDS             complement(34096..35142)
                     /gene="galT"
                     /locus_tag="PXC99_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HDL5416767.1"
                     /translation="MSEFVLNDHPHRRFNPLKNQWILVSPHRAKRPWQGQQEEIVQDE
                     KPSYDPSCYLCPGNKRITGEQNPNYTKPFVFKNDFSALLPDTPAPIPNDDPLFQISHT
                     QGESRVICFSPDHSKTLPQLSIEEITDVVTVWQEQANELKEHYQWVQIFENKGSMMGC
                     SNPHPHGQIWASNFLPNEIAIEDECQAKYFAQYGSPLLLDYAQRELDKQERIVAETED
                     WIAVVPYWAAWPFETLLLPKAKQFKSITDLNEAEKADLALALKKLTTRYDNLFNISFP
                     YSMGFHFAPFNGKENAHWQLHAHFYPPLLRSATVRKFMVGYEMMAESQRDLTPEQAAE
                     RLNAVSDTKHYKDK"
     gene            35355..36206
                     /locus_tag="PXC99_000271"
     CDS             35355..36206
                     /locus_tag="PXC99_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF817 domain-containing protein"
                     /protein_id="HDL5416768.1"
                     /translation="MERLNKFDAWLMNHKPNARLSGASRLLTEFWFFGLKEARACLFA
                     GLFFIAMFSVPKTGLWGLPRYDILLIFAIVVQIAMVKLGLETWDELKAISLFHLVGFV
                     LEVFKTSSNIQSWAYPDFAYTKLFNVPLFTGFMYAAVGSYIIQAWRLFDLKIKSHLPY
                     WLATLTALMIYLNFFTHHYIGDYRWYIAAFALGLYARTFVFFTPYDITRKMPLLLSFF
                     LIGFFIWLAENIGTFAGIWRYPNQFGAWSMVHMSKWSAWALLVMMTFTIIVHLKHIKQ
                     TVRVSSD"
     gene            complement(36292..37377)
                     /locus_tag="PXC99_000272"
     CDS             complement(36292..37377)
                     /locus_tag="PXC99_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL5416769.1"
                     /translation="MEYRYYITTALVIAVLQLFLFNFAKTVSWLFNLSSKNRKTVGIL
                     TFLVANGLVILHLTRTFALFRIMAFILVLLLFAFFISFFTACIYKIFNGNTTVNRWLK
                     IAYPFAFFGLLGLGYYNAYTPTVVHYSVKLDKPLEKPLRIGMASDLHLGKLFGTKQLD
                     QLAEIFNQQKVDLILLPGDIMDDNTEVYVADKMQPHLAKLKAPLGVYATLGNHDFFGA
                     QETIAKEITDAGITVLWDQTAEINGKFTLIGRNDDLVKNRPSAEQLLQNVNTKLPVIL
                     LDHRPTEIEQHAKLPIDIQVSGHAHKGQVFPASIITKLIYRLHYGYEKIGFGHYFVTS
                     GYGFWGVPMRLGSQSEVMIIDVEGENP"
     gene            complement(37399..38379)
                     /locus_tag="PXC99_000273"
     CDS             complement(37399..38379)
                     /locus_tag="PXC99_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HDL5416770.1"
                     /translation="MLFDSIQFSIGVTLPTILLMLFGIFPRRRKFIDDTFCNMASKVV
                     FNFTLPPMIFLNMLKSPLDFSSQINLISTGVGGSILIYLWAEWWAARHIENRRYRCIF
                     TQGTFRTNAAILGIALILNAYGDKALAAASVYISCLVITFNVLAVITLTSSLSEKKVN
                     FGRLILSILRNPLILAVIAGLTFNYFELSHQIPTPLESAGKLMASLTLPLALICTGAS
                     INFKQLKQFNQGVESTINKIVLFSASIRLIFAPIFLLLLGKFVFQLPPMELGIVFVAA
                     SAPVASATYAMTRNYGGDGEAAANLIGITTLGSMFSASIGLFLLRQIGWV"
     gene            complement(38482..39580)
                     /gene="prfB"
                     /locus_tag="PXC99_000274"
     CDS             complement(join(38482..39504,39506..39580))
                     /gene="prfB"
                     /locus_tag="PXC99_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550889.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HDL5416771.1"
                     /translation="MFELNPIKNQLTDLSERTAVIRGYLDFEHKVERLEEVNAELEQP
                     DVWNKPEKAQALGKERAMLEQIVNTIKALEQGIEDVEGLIELAVEAEDQDTFNEAQVE
                     ADELEKKLADLEFKRMFSGPHDSADCYLDLQAGSGGTEAQDWTEMLLRMYLRWAESKG
                     FKAELMEASDGDVAGIKSATVKISGDYAYGWFRTETGIHRLVRKSPFDANNGRHTSFS
                     AAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHIPSGIVVQCQN
                     GRSQHQNKDQAMKQLKAKLYELEMSKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIK
                     DHRTGVEHRTTQQVLDGDLDKFVEASLKAGL"
     gene            39836..40744
                     /locus_tag="PXC99_000275"
     CDS             39836..40744
                     /locus_tag="PXC99_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="HDL5416772.1"
                     /translation="MAKRPSDIDATLLQLEILRRIPKLPAKIDAKSLHQQLLDAGFER
                     DIRTVQRSLKMLCEHFDIECDERSKPFGYSWKIRSEGLALPILNEQQSLLLKLAEQQL
                     KYLLPANLMASMKPFFEQADRMVSGAKDKPEYQWLNKVCSTPTSLPLIPAKIKEEIFN
                     SVSQALFQNKLLKIEYQNQHGKKHQATIMPLAISQQGASIYLVCRYEGFDDNRLLALH
                     RIRKAEISTFSFERPKDFNLQAYQDAGHLGFGNGEKASLTFSISRDAGFHLTETPLAK
                     DQKILEESETHYRIQAIVADNDMLTW"
     gene            41045..41686
                     /locus_tag="PXC99_000276"
     CDS             41045..41686
                     /locus_tag="PXC99_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase 2C domain-containing
                     protein"
                     /protein_id="HDL5416773.1"
                     /translation="MPFQLTFCQQAGNQHQKNQDALFNGKAVYQWQLKNAESYLLDND
                     KVIFGVADGVSSHPRNHLASHYLMALLSQCQSLDSQWLRQAHGDFCEKLAKDYFGASC
                     TFVACELHHNGRGRMVNVGDSRAYKITANGEWQQLSFDHTILAEMKQKGLVKEGSNYA
                     SMYNGLTDCIVADFDADDFRIHIAEFQLEKGESILLCSDGLHEQLAPEAIQAI"
     gene            41853..>42058
                     /locus_tag="PXC99_000277"
     CDS             41853..>42058
                     /locus_tag="PXC99_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005637830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HDL5416774.1"
                     /translation="MKNDFHYAAELIRNADGILITAGAGMSVDSGLPDFRSVGGLWNS
                     YPPLKKFNLQFMQIATPLAYQERP"
BASE COUNT        12198 a         8549 c         9388 g        11923 t
ORIGIN      
        1 tatctctttt gttcaaggca agtatggata cctgaccgca ggcctggaga tagaacctac
       61 atataatatg ctctactaca ttaagccata aaaaatagaa aatcaagtgt ttgttcaagt
      121 ttttatgtta ttgaatttac aataactaca aaaatttatc ttaattggct cgattgattt
      181 ttacacaaaa catagctaac atatccaaaa tcactcacat taggagctta aaaatgacag
      241 cgattactat ccctcaattt gaagaggtga cttctaagca atttcaatct gagttcggca
      301 gaattgttga tatcgtaaaa ggcaaaaccc ctgtggcgat tacccaatat ggcagaccga
      361 caatggtgct ttttccttac gatcaagcgg ttgaagctcg gcgattatta gcaaaacagc
      421 gtttgcttga aatgcttgca gagcgagata agaatccgcc ggcagctctt gcagaaatca
      481 cgcttgaaga gttggataaa atgattgatg aggaacgtaa tgcactctga ttatttagtg
      541 attgatacga atattttgat tagtggttta ttgttcccaa aatcaaatcc caatttagca
      601 gtgaaaaaag ccttattagg ctataccatt tgtgtctcgc aagcgacttt tgacgaattt
      661 ttagaagtct ccgctagacc gaaatttgct aaatatttca gtattcagga aagggaagaa
      721 tttattgcca atttgttgga tgcagtaaag tttgtggaaa ttaaagaaac gattacagat
      781 tgccaagatc ccaaagataa taaattttta gaagtggcga tcagtgcaaa agcgaagtat
      841 ttagtgacgg gcgataaaaa agatctcctc agtatgaacc cttatcggaa tgttgaaatt
      901 atttccgtca gcgaattttt agcggaaact cgctaatgaa acggtttctc actctttttc
      961 ttctcctttt ttcatctttt tcattagccg aaacccacca aatcggcatt ctcgctcagc
     1021 gtggggaagc ctacacccgc acccattggc agccttgggt ggattggtta aattcgcagt
     1081 ttcccaacga gcggtttgag ctggttccat tggggattaa cgaggcgagc cgccgggcgg
     1141 agttggattt tctgctgacc aatcaagctc agtttttcta tttgagtaac caaaatgtgc
     1201 gatggcttgc cacgctcaac agtccgtttt cggcaaatgg tgagcaaggg gcggtgggca
     1261 gtagcatttg ggtgcgtgcc gacagccatt atcagcagtt aagcgatctg aaaaatcaga
     1321 ctatcagtgc ggtggataac gatgctttcg gcggtttttt gcttgggttg tatcagtttc
     1381 atcaagcagg aatgcggcaa aatcgggatt tttcggtgca gtttagcggt tttccggtgg
     1441 aaaatgcgtt ggctttgctg gcggaaaaac aggtggaagc ggcgattgta ccggtctgtt
     1501 tgctggaaga gttggagaaa gagggcaagt tcaagcggtc ggattttcgc ttaattttgc
     1561 aaaacccaca ggcgcagggt tgccttgcca gcacgccgtt gttgccgaac tggtcgctgg
     1621 cggcaatgga aaatgtgcca aacgagctgg cggtacagct tgccacacgc ttgctaaaca
     1681 gccacaatcc cgacctaccc cgctggacgt tgccgttttc ttccgcccaa gccgatcaca
     1741 ttctgcgtga actgtatcgc cacccgcaac aaaaaagcct gtgggcaacg gtgctggatt
     1801 gggttcgtct caataaattc ggcttgttgg cggtggtgtt gttcattttg ctcaaccttg
     1861 tcgccctgcg ttatcaggtc tatcgcaaaa gcaaggcgtt acagcaggca cactgcaaaa
     1921 tgcagcagta tcagcaggaa ctgacccgag ccgaccgcct tgctttgttg ggcgagatga
     1981 caaccggttt tgctcacgaa ctgaaacagc cgttgtcggc ggtgcgaatg tacgccgagg
     2041 ggctgaaaag ccaaaacagc gatccttatc aacagcggat tttggataag ctgattgcgc
     2101 aggtagatcg ggcagtgaaa acgatgcaga gcattcggga ctgggcgcaa aaccgcccga
     2161 gtggtgaacc gcaagcggtc attttgaacc aattgattac taatgtgatc gagtttgtgg
     2221 cggtggaaaa tcgccagaat gcacaaatct cgctgattgc cgaccgcact tttcggctta
     2281 atttacacgc cacggtactg gaacaagtac tgacgaactg cctgctcaac gccctgcaag
     2341 ccggtgcaag cgagatatcg gtgcggttac aagcggtcga aaacgggctg gaaattgcaa
     2401 tcgaagacaa cggcggcggt ttttcccctg cccagcttga atttccgttt gtgccatttc
     2461 gcaccgacaa accacacggc ttagggctag gcttggtgct atgccaacgg ctgatgcaat
     2521 cgctcaacgg acggattgta ttggcgaacg gggagaacgg ggcgaaggta gtgcttttac
     2581 tccctcaaat ataaatgtag gggcaggtcc tgtgcctgcc cgtaaatcct atcaaattca
     2641 gggcgggcac aggacccgcc cctacggaaa aaagaaaaaa tgattattca cattcttgat
     2701 gacgaagaaa gcattttaga cgctatgtcg ttcctgcttg ccccgcttgg ggtggaaatc
     2761 caaacgtggc aatccagcct agattttttg gcacaggcgg atttacaccg gcaaggcgtg
     2821 ctgttactag atattcgaat gccgctgcca gacgggcaac aggttcatca acaactgcga
     2881 gaggcacaat cgaccctggc ggtggtgatt atgaccgccc acggtgatgt gccgatggca
     2941 gtcgctgaat tgaaaaaagg cgcagtggat tttctgcaaa agccggcaag ttttgaacag
     3001 ctaaaacagg cgattgcaca ggcggaaaaa gtaagtgaaa aagcggtgaa aattcgtgaa
     3061 atttcgcaaa attacgccaa attgacggaa aaagagcgta accttgtgcc actgattatg
     3121 caaggtttca ccaataaaca gatcgcagat aaattagcga tttcagtgcg tacggtggaa
     3181 gtacatcgag ccaatgtgat ggaaaaaatg caggcggaga gtttggcggg gctggtgcag
     3241 atgatcgggg agttacaata taaaggtagc ggaaattgct ctgctacctt tagtttcgac
     3301 ttttgccgta ttaatttact tctttaaact gaatcattcc cgcttcggca aaattgttat
     3361 cgtcatcttc gtataagaag gttttggctt caattttgac atcatcaaaa gcggtgtcgc
     3421 cttctatgcc ttcaatggtt tgaccgtgtt taatcccttt aaaatcaaac aatttcggat
     3481 cgcataagtg ggatggcacg atatcttgca aagcactgaa cattgtttct aaacgccccg
     3541 ggtattggcg atcccaagta ttcagcattt ctttcaccac ttggcgttgt aaattaggct
     3601 gagaaccaca cagattacac ggaataatcg ggaactgctt ggcttcggca tatttgataa
     3661 tgtctttttc tttacaatag gcgagtgggc ggatcacaat ttgcttgccg tcatcagaga
     3721 tcagtttagg tggcatactt ttcattttgc cgccgtagaa catatttaag aataaagtcg
     3781 ccagcatatc gtcacggtga tgccctaatg caattttggt tgcacccaat tcggtggcgg
     3841 tgcggtataa aatcccacgg cgaagtcgtg agcaaagtga acaggtggtt ttgccctccg
     3901 gaattttctc ttttacgatg ccgtaggtgt tttcttccac aattttgtat tccacgccaa
     3961 tgctttctaa atagcgaggc aatacctctt ccggaaatcc cggttgcttt tggtctaaat
     4021 tgaccgctac cacactaaaa ttcaccggtg cactttgctg taaattgagc aaaatatcta
     4081 acagcgtata gctgtcttta ccgccggaaa ggcagaccat tacacggtcg ccctcttcaa
     4141 tcataccaaa atcggcaatg gcattaccga cattacggcg taaacgtttt tgtaacttgt
     4201 tgaaattata agtaattttt ttatcagatt tttgaatatc gtctgtcata atagttgtac
     4261 taggcttaga aattagcggt gtatagtaaa gatttcgcac tattttgcaa gttaattatt
     4321 cggcttcagc gtagcgatat agttacaact cacatcatta ttgagccaaa atttttcggt
     4381 taatgggttg aaatggtagc ctctcatctc ttggcaacgt aaatcagcct gatcgcacca
     4441 agctaacaat tcggcaggct tgatgaattt ttcaaattcg tgcgtgcctt ttggcaacat
     4501 tttcagcaca tattccgccc cgataattac caacatatag gctttaaaag tacggttgat
     4561 ggtagagaaa aacagcacgc cgtcaggttt gagcagggct ttacagcttt gaatgataga
     4621 aagcggatcg ggaacgtgtt ccagcatttc catacaagta atcacatcga atttttcttg
     4681 attacaagcg gtcatttttg ctaaaaaatt ttcaatcgtg gtttgttggt aatcaatctc
     4741 taacccactt tctttggcgt gctgctttgc cacttcaagc ggttgagagg tcatatcgat
     4801 gccggtaaca atcgctccct gttttgccat tgcctcactt aaaataccgc caccacagcc
     4861 gacatctaac acctttttgc caaataaacc gttcgatttt tctaaaatat aggctaaacg
     4921 cagtggatta agcagatgaa tcggcttgaa actgccgttt ggatcccacc aggttttagc
     4981 catattttca aattttgtga tttcttgctg atcgacgttt tgcataaact gttcctatgg
     5041 taaatttagg gcattactat aacgcattta gcctaaaagg aaaatcagaa tgacccgaat
     5101 taaccttgtt ccgccaacgg aattatgcga tcaacatctg cttgccgaac atcgtgaact
     5161 tactcggatt ccgaatgcgg tagcgaaagg caaatttagc ctaaaaggac agccagaaga
     5221 ttacaaactg ggcgagggac acgttcggtt tttcttcaat aaactcacgt ttttgaaaaa
     5281 gcgttacgat gcgttacacg aggaatgttt agcaagaggt tttaaggtgc aatatttctg
     5341 ggcggaacat ttaccacaag atccctctct ctggctagat tatcagccga ctgaaaccgc
     5401 tctgactgta aatcgggagc gaattgcatt aagaatgccg gcaaatccac gttttagcga
     5461 aagaaaatga ccgcttgtac gcctttttgt tgctttttat gctataatct cgccaatttt
     5521 ttcgccttat ttaaggctct tttactaata aaattaggaa atttcaatga gcgaattagc
     5581 caaagatatt attcccgtaa gtattgagga cgaattaaaa acctcttacc ttgactatgc
     5641 gatgtcggtg attgttgggc gtgccttgcc tgatgtacga gacggtttaa agccggtaca
     5701 ccgccgagtg cttttttcaa tggatcaaaa cagcaacacc tataataagc cgcacgttaa
     5761 atctgcccgt gtggtcggtg atgtgatcgg taaatatcac ccacacggtg actctgcggt
     5821 gtatgacact attgtgcgta tggctcaacc gttctcacta cgttatatgt tggtggacgg
     5881 gcaaggtaac tttggttcta ttgatggcga tgcaccggca gcaatgcgtt ataccgaagt
     5941 gcgtatgcag aaaattacgc aggaattatt aaccgatctc gataaagaaa cggtggattt
     6001 ctcaccgaac tatgacggca aagagatgat tcctgatgta ttgccaacca aaattccggc
     6061 tctgttagtc aatggttctt cagggattgc ggtcggtatg gcaaccaata ttccacctca
     6121 taatttaggc gaagtattag atggttgctt ggcgtatatt gaaaatgaac agattagtgt
     6181 tgaagagcta atgcgttata tcccggggcc ggatttcccg accggggcga ttatcaacgg
     6241 tcgtaaaggg attgaagagg cttaccgcac cggtcgtggc aaggtgtatg tgcgcgcgaa
     6301 agccagcgtg gaaacaactg ataaagggcg tgagcaaatt gttgtaaccg aactgccata
     6361 ccaagtgaat aaggcaaaat taattgaaaa aattgccgag ctggttaaag agaagaaaat
     6421 cgaaggcatc agcaaaattg atgactattc cgataaaaaa gggatttcga ttgttattga
     6481 agtcaagcgt gatgcagtgg gtgaagtggt gttaaaccac ctttattctt taacccaaat
     6541 gcaggtcacg tttggtatca atatggtggc gttagataat gggcagccaa aagtgctgaa
     6601 cttacgccag atcatcgaag cctttgttaa acaccgtcgt gaagtggtca cacgccgtac
     6661 gatttttgaa ttgcgtaaag cccgtgaacg tgcccatatt ttagaaggtt tggcgattgc
     6721 gttagcgaat atcgacccgg taattgaatt aattcgagcc tcaaaaaccg cagaagaagc
     6781 ccgtgaaggc ttattggctc gcccttgggc attaggcaat gttgcaccaa tgttagaggc
     6841 tgctggtgtt ggtgcttccc gaccggaaga tttacctgaa cacttaggag tgcgtgatgg
     6901 cgaatactat ttatctgaag ctcaagccag agcgatttta gagctacgct tacaccgctt
     6961 aaccggttta gaacacgaga aaatcgttga agaatacaaa gaactcttaa ctgaaattgg
     7021 cgaattaatc cacattttaa ccagcccaga acgcttaatg gaagtgatcc gtgaagagtt
     7081 agaacgtgta aaaaccgatt ttaatgatga acgccgtact gaaattaccg cagcctctgg
     7141 cgacatcaac attgaagact taatcgcaca agaagatgtg gtggttacgc tttctcacgc
     7201 cggctatgtg aaatatcagc cgttatccga ctacgaagca caacgccgtg gcggtaaagg
     7261 taagtcggca accaagatga aagaagatga tttcatcgaa aaactcttgg tggcaaacac
     7321 ccacgacacc attctttgct tctcaagccg tgggcgttta tatcaattaa aagtgtatca
     7381 attaccgcaa gcaagccgtg gggcaagagg cacgccgatt gtgaatattc tgccgttagt
     7441 gaaagaagaa aacgaacgta ttaccgcgat tctaccgatt ccaaacggtg aatttagtgc
     7501 cgataagttt atctttatgg caacagctag cggtgtagtg aaaaaagttt cccttgatgc
     7561 ctttagcaac gtgcgtgcaa gcggtctgat tgcgttaaaa cttcgtgaag gcgatgagct
     7621 gatcggggta gatattactg atggtaacag cgaaattatg ttgttctcgg cacaagggcg
     7681 agtagttcgc tttgccgaaa cagcagttcg tgcgatggga cgtaccgcca ccggcgtacg
     7741 aggtattaaa ctttctacca ccgaaatttc aagcgaagaa attgaagaag ctgaaattat
     7801 tgaaactgac aatgaagagg cagaagattc ctccagcgtc agccttgata aagaccgtgt
     7861 ggtttcttta gtgattcctc gcaccgaagg cgatatttta accgtcaccc aaaacggcta
     7921 cggtaaacgt acggtgatta gcgaatatcc ggtgaaatcc cgagcaacca aaggggtcgt
     7981 ttcgattaaa gtgaatgaac gaaacggcaa agtggttgcg gcagttcaag tagaggaaac
     8041 cgaccaaatt atgttgatta ccgatgccgg cacgctggtt cgcacccgag tggcagaagt
     8101 cagcctcgtt ggacgaaaca cccaaggcgt acgtattatt cgcaccgcag aagacgaaca
     8161 agttgttagc cttgaacgag tctgcgagcc tgaagacgat gaaaatgaaa gcctagacgc
     8221 attagaaaat gccgaaacag cagaaacatc aactgaagaa taatcttaac taaacaagcg
     8281 gtcgaatttt cacaattttt tgcaaaaata gaaggaaatt cgaccgtttt tggatcatac
     8341 agtagataat aaaaactatg gcacttatca atctttccaa cgcctattta ggctttggcg
     8401 atcatccttt attggatcat actgaattac atatcgaacc cggcgagcgg gtttgtttgg
     8461 tggggcgtaa cggggcgggt aaatcgaccc tgatgaaaat tctggcgggc gaagttcagc
     8521 ttgatgacgg caagttggta tttgaaaaag acattgtcgt tacacgtctt gaacaagatc
     8581 cgccccgcca tattgaagaa acggtgttcg attatgtggc ggaggggatt gcccatcttg
     8641 ccgacttatt gaagcaatat caccacattt ccctgcaaat gcagaccgat tacagcgatg
     8701 aactgctcgc caaactttca gcggtgcaat cgcaattaga acacgctaac ggttggcagt
     8761 ttgaaaaccg cattcaagac accttgaaac tgctggaact cgcccccgac aaacgcctgt
     8821 gcgaactctc aggcggttgg gtacgccgtg cggcattggc tcgggcgttg gttgccgatc
     8881 ctgatgtatt gctgttggac gaaccgacca accacctcga cattgaggcg attgcgtggc
     8941 tggaaaatct gttattggat ttcaaaggca gtattatttt tatctcgcac gaccgtgcct
     9001 ttatccgcaa aatggcgact cggattgtgg atttagatcg aggcaaattg gtttcctacc
     9061 caagcaatta cgataaatac ttggaagaaa aagccgagga tctgcgagta gaagcgttgc
     9121 aaaatgagct gttcgacaaa aaactcgccc aagaagaagt ctggatccgt caagggatta
     9181 aggcaagacg cacccgaaac gaagggcgtg tgcgagcgtt gaaagcgttg cgtgaagagc
     9241 gtagaaaccg ccgagaggta caaggcacgg cgaaaattca gatcgacaac accgcacgca
     9301 gcggcaaaat tgtgtttgaa gtggaaaatg ccggctatga aatcggcggc agaaccctgc
     9361 tgaaaaattt cagcaccacc attttgcgtg gcgataaaat tgccctgatt ggagcgaacg
     9421 ggatcggcaa aaccacgctg atcaagctgt tacttggcga aattcagccg acatctggtt
     9481 cagtgcgttg tggcacaaaa ttggaagtgg cgtacttcga ccaataccga gtcgatcttg
     9541 accctgaaaa aaccgtgatg gacaacgtgg cagacggcaa gcaagatgta gaagtaaacg
     9601 gggtgaaacg ccacgttctt ggctatctgc aagacttcct gttcccgcca aaacgggcga
     9661 tgacaccggt gaaagccctc tcgggtggtg aacgcaactg cttgttgctg gcaaaactgt
     9721 tactcaaacc gaacaacttg ctgattttgg acgaaccgac caacgatttg gacgtggaaa
     9781 ccctcgaact gctggaagag atgctcaccg actatcaagg caccctgatt attgtgagcc
     9841 acgaccgtca atttgtggat aataccgtaa ccgaatgcta cttcttcgag ggcgaaggcg
     9901 tggtgaataa atatgtcggc ggctatttcg atgccaaaca acagcaggaa aattacttcg
     9961 ccgccactgc cgacaagcgg ttaaattcga gtaaaaattt gcaaaaaata gaggaaaaag
    10021 caccgcttgc ggagcaagag aaacagaaag ccgatcagga aaaaacgaaa gcagagccga
    10081 cgaagaaaac caaactttcc tacaaagaac agcgtgaact ggacgagtta ccggctaaaa
    10141 tggaacagct tgaagccgac attgaagccc tgcaagccga agtaaatagt gccgaattct
    10201 tcgccaaaga tccaagctac accaacgccc agctacaaaa acttgccgat accgaagccg
    10261 cgttagagca agcctttgag cggtgggaag cgttggaaaa tattaaaaac gggaatatct
    10321 aatgtagggg cgaatgatta ttcgcccttg atggataaaa tgattgggcg aaaaattttt
    10381 cgcccctaca aatgtgaagc aaaatgacag aaagattaga taactacgaa caacgttttg
    10441 gtggcattgg tcgcctttat acgccggaag gattggagaa actacgccgt tcgcatattt
    10501 gcgtgattgg gattggcggg gttggctcgt gggcagtgga ggcattggct cgctcaggta
    10561 tcggtaagat cacgatgatc gatatggacg atatttgcgt gaccaatatc aaccgccaaa
    10621 ttcacgcaat gagtggcacg gtggctcaac tgaaaaccga agcgatgaaa gagcggattg
    10681 agcggatcaa ccctgaatgt gtggtggaaa ttattgatga tttcttaacg caggataatc
    10741 tcgcagacta cctcaatcga ggatatgact atgtgatcga tgcgattgac agtttgcggg
    10801 taaaagcggc gatgattgcg ttttgtaaac gcaataagat caaaattatc accaccggcg
    10861 gggcgggcgg gcagaccgat ccgaccaaaa ttcaaattac cgatttaagc aaaacggtgc
    10921 aagatccgtt ggcggcaagg gttcgtagcc tgttgcgtaa agagtacggt ttcagcaata
    10981 aaaacaaatt cggcgtggag tgcgtttctt cgactcagca actgattttc ccacaaatgg
    11041 gtgaggcctg tgaggtgtcg gcaacaatga actgtgccaa cggctttgga gcggtgacaa
    11101 tggtgacggc aacgttcggc ttttttgcgg tgagtcgggt gattgataaa ctattaaaat
    11161 aacaagcggt catattaaat gaattttttg caaatcaagg agtaaataat ggcaatacat
    11221 cgagtcaacc cgaaagggag tatggaacag ctttcccatt tggaaatgga gttgttggca
    11281 aagaatacgc agggtaattt gcatcaactt tatcgtaatt gctctttggc ggtgctaaat
    11341 tccggtgtgc ataccgatga cagccgagcg ttgttaagcc aataccctga ttttgaaatc
    11401 cgcttattaa cccgtgaaaa aggcgtgtcg cttgaattgc ataatccacc cgaaactgcg
    11461 tttgttgacg gcaagatgat tttgaatatt caatatcacc tttttgcggt gctgcgggat
    11521 attgtgtttg tgaatgcgtt aaaaaatgcg attagaccgc ttgaagagac ttctttagaa
    11581 gccttaacca cgaataccgt attttcgatt ttgcggaatg cgaaagcgat tgaaatgaat
    11641 accgacccaa atttggtggt gtgctgggga gggcattcga ttaatgaaac cgaataccaa
    11701 tattgccgtg ccgtcgggca agagtttggc ttgcgtgagc tgaatattgt gaccggttgc
    11761 ggagccggtg tgatggaagc cccgatgaaa ggagcggcta tcggacacgc caatcaacgt
    11821 tataaaaacg ggcgttttat cggcattacc gagccgtcta ttattgcctc cgagccgcca
    11881 aacccgattg tgaatgaatt ggtaattatg ccggatattg aaaaacggtt ggaagccttt
    11941 gtgcgtttag ggcacgccat tgtggttttc ccgggcgggc cgggaacgct ggaagagttg
    12001 ctgtatatta tcggtattaa gttaaacccg gctaaccatg ctcagcaatt accactgatt
    12061 ttaaccgccc cgaaagaatc ggcagactat ttctatgcca tcgatcaatt tattggcgaa
    12121 actttaggcg aagaagctcg cagtttgtat gaaattatta ttgatgactc ggtgttggtg
    12181 gctcgtaaag tcaagcaagc gatgattgag gtaaaaagca gccgttatga aagtggcgat
    12241 gcttataatt tcaactggtc gttaaaaatt gaggaagatt ttattacgcc atttattcca
    12301 acccacgaaa atatggcaaa cctgaattta agtttagcac agccaaaaga gcagctggct
    12361 gcgaatttaa gacgggcatt ttcagggatt gttgcaggta atattaagcc ggagacctcc
    12421 gatttaattg agaaatatgg ggtgtttaaa ttacacggcg atcgtaaatt aatggagcat
    12481 atagataaac tgttggagcg ttttgtggtt caacaccgta tgaaaattcc aacgggtgag
    12541 gcgtaccaac cttgctatga aattgtaaaa gggtaatgct aacaaggggt aaggtatgta
    12601 tttaaagcat attgaaatca gtggctttcg tggtattaac catttatcgc tccagctacg
    12661 accaaatatg gtattgattg gcgaaaatgc gtgggggaaa tccagtctga ttgatgcatt
    12721 aagcctgatt tttaaccttg agcaggcgtt gtatcaattt cagttcaaag atttccatat
    12781 tcaatacacc gataccccca accaagtgcg ggacattcaa ctggtgttta ccttttgtga
    12841 agagcatcag cacgatttag cggtgcaatt tcccgcttat ttggcacaag ccgcgtttta
    12901 tattgataat caccgctgtg tttcgcttgc cgtaaccgga aaattacacg gagagcagat
    12961 tagcaccgac tatcaatttg tggatcaaag cctaaaaccg atccagatag aacaagcgga
    13021 aaacgccatt cggcagttta tttaccatca ccctgtttat cgcctgcgtg atgcaaggct
    13081 caataacagg gtgcataatg aattattact taaaggatcg tctcaacttg aagacgattt
    13141 tcaacgtgaa ttaaacgccc tctcttcgct actgaaatac tattttctaa ccagccaaag
    13201 tcgctatttg atcaaaacca gtatgcaaga caccgcattg tggtgggaaa aagtaaaatc
    13261 cctctgttta cgcctaaaac agcagccgga attggtcgaa tctgctcagc agcatatttc
    13321 tactctattt ttgtttaatc ctagatctac agtaatagaa aagccgatta ttttatttga
    13381 agatctgaat gctcaactac accctcgaat gattgcgatt ttttgggaac tgctcggttt
    13441 tttacccagc caacggatca ccactactaa ttctattgaa ttgttatcgc aagtgcctct
    13501 gcgtgaaatc tgccgtttgg tgcgtcatca cgatcatacc caagcctatt ggcttgaacg
    13561 ccacagttta ggcaaggaag atttgcgaaa attaaccttt catattcacc ataatcgtgg
    13621 cttggcactg tttgctaaag cgtggatttt ggttgagggg gaaacggagg tttggatttt
    13681 gcaagagctg gcgagattat tagatattca tttggaaatg gaagggatca aaatcgttga
    13741 atttgctcag tgtggcttac gtccgttaat taaatacgcc agagcaatgg ggatcgaatg
    13801 gtatgtgctg actgacggtg acgattccgg caaacgttat gcagatacgg taaaaagtat
    13861 ggaagaggat tttgctcacc ggctcacgat gttgccacaa aaagatatcg aacatttttt
    13921 ctacaaagca ggcttgcgga atgtgtttat acagcttgca aattggcgtt cacaagaaaa
    13981 atatccggtg tcctacatca ttaaacgagc gattcaacga agctcaaagc ctgatttagc
    14041 cattgcatta gccaatgaga tggggcaacg gggagagcat tcaattccaa ctttatttaa
    14101 acaattattt gcagatgtgc tggcattgat aaacaaagta tagaatacaa gcggttaaat
    14161 ttgacaaaaa attgccaatt ttgaccgctt gtttgcttgt gatgaaaacc aatcatacaa
    14221 aactctaatt tatttcaagt gcaagctatt attttatgcg ttatgcttat ttggaataaa
    14281 aaaatcgggt tagttgattg acatagcatt ctagacgtct aaaataacca aaaataatag
    14341 ttaattgaat gtggataaat agaaaatgat tcagctgaaa aatatcagca aacaatttga
    14401 ggtaaagggc aaaaaaatta ccgctctgga taatgtaaac ctagaagtac caagaggcac
    14461 tatttatggt gtcattgggg catcaggggc aggaaaaagt accttaattc gctgtgtaaa
    14521 tttattagaa cgcccaacaa tcgggcaagt gattgtcgat gggcaagatt taacggcaat
    14581 gtcggataaa gagttgattc acgctcgccg taatattgca atgattttcc aacattttaa
    14641 tttgctttca tcacaaactg tatttgaaaa cgtggcgtta tcgttgcgtt taagcaatac
    14701 gccaaaagag caagttgaga agaaagtcaa tgagctgttg gatttagtgg ggttaacaga
    14761 tcgtaaagat gtttaccctg caaatctttc cggtgggcag aaacagcgtg tagcgattgc
    14821 tcgtgcgtta gccagcgatc cacacgtttt gttgtgtgat gaagcgacca gtgcgttaga
    14881 tccggcgact acgcaatcca ttttgcagct attaaaagat attaataaac gtcttggttt
    14941 gacgatttta ttaatcactc acgaaatgga agtggtaaaa cgcatttgtg accgagtagc
    15001 agtgattgat aaagggcagt tgattgaatc tggctcggta agtgaaattt tctcgaatcc
    15061 gaaaaccgaa ttagctcaga aatttattca atcgactttc cattttgaat taccgcaaga
    15121 atataccgag cagctttcaa gttcgccgac tgaacatagt aagccgatta ttaaatttga
    15181 gtttaccgga cgttcggtgg atgcaccttt gctttcaatg gcatcgaaga aattcggcat
    15241 tgattttagt attttgatgt cgcaaattga ttatgcaggc ggggtcaaat ttggatttgt
    15301 aattgcagaa gtgagtggta atccggattc cattgcagag gcaaaatttt atttaattga
    15361 taacaatgta aaagtagagg tgttaggcta tgtgggctga ttttatgcag gagatgacgc
    15421 cacagatgtg gagcttagta tgggaatcta cttttgaaac cgtttatatg ggctttgtgg
    15481 caacggcatt ggcggtagtc atcggtttac cgattggttt cttggcgttt ttaaccggta
    15541 aaggcgaaat tttagaaaat ccgagattac accaagtgtt agatgtcgtt attaacatcg
    15601 ggcgttcgat tccgttcatt attttattga ttattttgtt gccatttact cgcttagttg
    15661 tgggcacaac attaggcaca acggcagcga ttgttccttt aagtgtttcg gccattccgt
    15721 tttttgcccg tttaacttca aatgcgttgc ttgaaattcc gtccggttta acagaagcgg
    15781 caaaatcaat gggagcaaca aattggcagg tagtgacaaa attttattta ccggagtcat
    15841 taccgatttt gattaatggc attacgctaa cgctggttgc tttaattggc tactcagcaa
    15901 tggcgggggc tgttggtggc ggcggtttag gcaatttagc gattagctat ggcgaacacc
    15961 gtaatatggt gtatgtgaaa tggattgcta ccattattat tgttgcgatt gtgatgatta
    16021 gccaaaaatt gggtgatcat ttagcaaaac gttacgatca tcgttaattt tatttaaaaa
    16081 gaggtttcta tgagtttcaa gaaaatttta ggcgttgcat tggtttctgc attagcatta
    16141 accgcttgta aagaagagaa aaaggcagaa tctaccgctg ctccggcagc tcaagctccg
    16201 gctaaaatca aagtaggggt aatgtcaggc cctgagcata ccgttgcaga acgtgcagca
    16261 cagattgcaa aagaaaaata tggtttagaa gttgagttcg ttttatttaa cgactacgct
    16321 ttaccgaata ctgcagtaag taaaggtgat ttagatgcaa acgcattcca acacaaacca
    16381 tatttagata aagacagcca atcaaaaggt ttaaacaact tagtgattgt gggtaacacc
    16441 tttgtttatc cgttagcggg ctactctaaa aaagtgaaaa atgtgtctga gttagcagaa
    16501 ggtgcggtaa ttgcagtacc aaatgatcct tcaaacttag ctcgtgcttt gattttatta
    16561 gaaaaacagg ggttaattaa attaaaagat aataccaatt tattctcaac ttcagtggat
    16621 attatcgaaa atccgaaaaa cttaaaaatt aaagaagtgg atacttcaat tgccgcaaaa
    16681 gcgttagatg acgtagattt agcggtggta aataacactt atgccgggca ggtaggctta
    16741 aatacccaag atcacggtgt atttgttgag tctaaagatt caccgtatgt gaatattatt
    16801 gtggctcgcc aagacaataa agatgcagct aatgtacaaa actttattaa atcttaccaa
    16861 accgaagaag tgtaccaaga agcacaaaaa cactttaaag atggtgtagt aaaaggttgg
    16921 taatttagct gatttttact taaatggcga ttaagcgcta ggttaatcgc cattttcatc
    16981 tttaaaatat aggaaggagc aaacaatgaa ctttaaaaaa ttattaggtg tggcgttagt
    17041 atctgcctta gcacttactg cgtgtaaaga tgaaaaagca caagcacctg ctacaacagc
    17101 taaaactgaa aacaaagccc cattaaaagt gggtgtgatg accggccctg aagcccaaat
    17161 gaccgaagtg gcagtgaaaa ttgcaaaaga gaaatatggc ttagatgtag agttagtgca
    17221 gtttactgaa tacactcaac caaatgccgc acttcattct aaagatttag atgctaacgc
    17281 gttccaaacg gtgccttatt tagagcaaga agtgaaagat cgtggttata aattagcgat
    17341 tatcggcaat acgctagtat ggccaatcgc ggcttattct aaaaaaatta aaaacatttc
    17401 cgagttaaaa gacggagcga ctgttgcgat tccaaacaat gcaagtaata ctgctcgtgc
    17461 gttattattg cttcaagctc acggtttatt gaaattaaaa gatccgaaaa atgtgtttgc
    17521 taccgaaaac gatattatcg aaaacccgaa aaatatcaaa atcgtacagg cggatacctc
    17581 acttttaacc cgtatgttag atgatgtaga acttgcggta atcaacaaca cttacgcagg
    17641 tcaagctggg ttaagtccgg ataaagacgg tattattgtg gaatctaaag attcaccgta
    17701 tgtgaattta gtggtaagtc gtgaagataa taaagatgac ccacgcttac aaacttttgt
    17761 gaagtcattc caaaccgaag aagtattcca agaagcgtta aaattattta acggtggtgt
    17821 ggtgaaaggt tggtaatcag ttggacggca tattctgccg tccttttctt aaaaggagaa
    17881 acagataatg aaaataatga aattagccgg tgcagttgca attttctcgc tttttttaac
    17941 cgcttgtaat gataaagccg aaaagttgaa agtcggtgtg atttccggcc ctgaacataa
    18001 ggtaatggaa gtggcggcaa aaattgcaaa ggaaaaatat aaccgtgatg ttgaattagt
    18061 ggtatttacc gattatgcca cgcctaatgc agctttagat aaaggcgatc ttgatttgaa
    18121 tgctttccag cataaacctt atttagataa ccaaattcag gaaaaaggct ataaattagt
    18181 gccggtcggc aatacttttg tttatccgat tgcggcttat tccaaaaaaa ttaaatcgct
    18241 ggcagagttg aaagatggtg atactattgc agtgcctaat gatccgacta atttagcccg
    18301 tgctttaatt ttattggaaa aacaagattt aattaagctg cgagcagatg caggcttaaa
    18361 agcaaccagt gtggatatta ttgaaaaccc tcgtaaattg gtgatccaag aaattgaagc
    18421 accattattg cctcgaacgt tggacgatgt tgccttttcg attattaata ctacctacgc
    18481 agggcaaaac ggtttaacgc caaccaaaga cggaatattc gttgaagaca aggattcgcc
    18541 ttatgtgaat ttaattgttg cccgtgaaaa taaccaacat tctgaagccg taaaagattt
    18601 ggtgaaagcc taccaaacag aagaggtgta taacaaagcg aatgaagagt ttaaaggggc
    18661 gatgataaaa ggctggtaat tgaagataaa taaggcatag attcctatgc cttacttttt
    18721 atgttacaga cctgctccgg ctcttaatgc ttcggctttg tcagtttttt cccaaggaaa
    18781 atgtttacga ccgaagtgtc cgtaggcagc ggtttcacgg tagattggtt tgattaaatc
    18841 taacattttg attaagccat acgggcgtaa gtcaaagttt tggtagatta atttcacaag
    18901 tatttcgttg ctcactttac ctgtgccgaa ggtttcgacc ataattgatg ttgggtcagc
    18961 caccccgata gcataagaaa gttggatctc acagcgatcg gctaagcctg cggcaacgat
    19021 attttttgcg acataacgag cagcataagc agcagagcga tccacttttg acgggtcttt
    19081 accagagaat gcaccaccac cgtggcgagc cgcaccaccg taggtatcta caatgatttt
    19141 acgcccggtt aaaccacagt cacccattgg accgccaatc acaaaacgac cggttgggtt
    19201 gatgaaatat ttggtgtttt ggctgagcca ttcgcttggt agtaccggtt tgatgatctc
    19261 ttccatcacc ccttcaatta actctttttg cgaaatatgc tctgcgtgtt gtgtagaaag
    19321 cactacggca tcaatgccga taattttatt gttctcataa gcaaatgtta attggctttt
    19381 agcgtcaggg cgtaaccaat cgagtttgcc cgatttacgc acttttgact gctgttccat
    19441 taagcggtgt gcgtaagtaa ttggagccgg cattaacacc tcggtttcat tggtagcgta
    19501 gccaaacata atcccttggt cgcccgcacc ttgctctaac ggatcggcac ggtcaacgcc
    19561 ctggttgatg tccggagatt gtttaccaat cgcatttaat accgcacaag agtgagcatc
    19621 aaagcccata tcagagtgag tatagccgat gtcgcaaatc acttggcggg ttaagttttc
    19681 aatatccacc cacgcagagg tagtgatttc tccccctact aatgccatac cggttttcac
    19741 ataagtttca caagcaacgc gtgctttagg gtcttgtttt aaaatttcat ctaataccgc
    19801 gtctgaaatt tggtctgcga ttttatccgg atgcccttct gaaaccgatt cagaagtaaa
    19861 taaattaatt gccatttgta ttcctctcta tcttaaatat ggattattaa tagtaggggc
    19921 gggtccagtg cccgcccata aattatataa aatgtttgga caggcacagg accggtccct
    19981 ataaaatttg tttggaagtg tttccgtcta gacgtctata atatattttt tgaacgtttt
    20041 aggcaaatag aatttgttta tttggctaaa tatgccctta aaccagccaa cgcatttttg
    20101 gcatcttcta cccctaaatc gtacattgct tgtattttat ttacatccgt ttcaaggcga
    20161 ctgattttga ctgttctgct tggacgaatc acaaaaatct gttgtttttc attgagttga
    20221 ataatctgct caacggcttg attatattcc gcatagcggt tttcccagcg ttgcactaat
    20281 ttcggatatt ttttataaaa acgtttaaac agccacatcg agcttggttt cttacggtat
    20341 tcaagtgggc gagtaagcac cacgataatt ttgtcatatc ccatttcaat aaatttctgc
    20401 accggaatac tgtctgacac accaccgtct aaatattttt taccctcaat ttcgactatt
    20461 ttggatacaa tcggcattga ggaagtagct cgaaaggctt ccatttgctc gaacacattg
    20521 tcaattttga tgtattcggg ctcaccggtt tcgacattgg ttacagtaac ccaaaagtcc
    20581 ataccggaat cctcaaaggc ttgttggtca aacggatcca gtttggaagg gagttcatag
    20641 taagcaaaat cccgattaac gatattgccg gtggtaagca agctgtgtaa ccccatatac
    20701 cgcttatctt tagcgtattt tttgttgtat cgcaacgccc tacctttttg ttttgaaggc
    20761 aaattcacgc caaataacgc accggctgaa acaccgattg ctccatctat atgaatatgt
    20821 tcatctaaaa atacatctaa cacgccggca gtaaaaatac ctcgcaaacc accgccttcc
    20881 agcactaatc caactttcat atcattctcc ctgtaatttg tgtattataa cccgaattat
    20941 cttgctagga gaaatcacaa tggctgatgc agaatttatg gatttcctgt tagatcaact
    21001 aagcccgatt tccggtttgc gttcgaaaaa aatgtttggt gaatattgct tgttttttga
    21061 taataaaatt gtcgctatta tcagcaaaga ttatcgcatt tttgtcaaag ctaatccgca
    21121 aaccttgccg ttattcttag ctgaaaatgc cgaacaattt cactattttg ctaaaggaaa
    21181 agtgcaaaaa atgcactact ggagcattcc ggaattagcg attgaagaag ccgatgaact
    21241 ggtcaaatgg attcggctag gcttacaagc ggtgtaattt agcgaaaatt ttgtaaaaaa
    21301 acgctaaaat atgcccgctt gttagggggg gggacctaat atttctatac tttaagattt
    21361 tatatttatg aaccaaaaaa aattagtttc tttgattgtc gttattgtgt tggcaatcat
    21421 ttctcaaatt tttagctttt ttgataaaaa agagccttca aaagcacaag aaaaatcgac
    21481 ccagagtagt cagtctcatc aagtttcaac ttcatcacta gggaactatg atgtgcagat
    21541 gaaaaacgac cgtttgaaac agcatattgt agataccgat tattacacct tagcgttgtc
    21601 gtggtcgccg gcgttttgcc aaaaacaaaa gcgaaataat cacggtaaaa ttccgtctca
    21661 tttggaatat caatgtggtg gctcagcgga ttttggttgg gttattcacg gcttatggcc
    21721 gcaaagtggc aaggcaagaa gtgttgatga acaccctcgt tattgccaag gcgatttgcc
    21781 gatggtggca gagcagacga ttaagcaata tttacctgaa tcgccggggg caactttgtt
    21841 gcaaggcgaa tgggaaaaac acggtgcttg tgcctttaac caagcggatg attacttcgc
    21901 caaacaaaaa gagctattta atcagctcaa attaccggat accgaaatgt ctaaattagc
    21961 actgtttaac tggatgcgag ccaataaccc tcatttgcaa aatgtctatt tagggggtag
    22021 caaagatgag ctgtatattt gctatgataa agcatttcaa ccaatggatt gcccacgcta
    22081 atggcagatc ttcgccaact gaaaatgcag gttcagcgcc aattaaagcg tgatcttgaa
    22141 cgtgcaaatc actattttaa taccactttt acgccaccaa gtattagcta tgcggtgcgt
    22201 ggcgtaaaag ccggtgtggc ttatcttgaa cgcaacgaag tacggtttaa tcctgtgtta
    22261 ttgcaagaaa atgaacaggc atttatccgc caagttgtgc cgcacgaact ggctcatatc
    22321 ttggtttatc aacattttgg gcgggtacaa tctcatggta aagagtggaa aatgatgatg
    22381 gaaaccgtac tgggtgtgcc ggcggaaatt taccattgtt ttgataccca aagtgtgcaa
    22441 cagcaattta gttaccaatg tgcctgccag actcaccagc tttcgattcg ccgacacaat
    22501 gccgtgatgc gagataaaaa aagctatatt tgccgtttat gtaaaactca actccatttt
    22561 gtagaaaaaa gttaatgtgg agaaaagtta agagaatgtt acgatttagc tagacattcc
    22621 tgtttaaacg cctacaattt gccgtagttt ttatttttaa ttttatttcc ggagtattta
    22681 tggaaacaat tgtaattgta ggtggcggtg caggcggttt ggagcttgca acctatctag
    22741 gcaacaaatt agggcgtaaa caaaaggcaa aagtggtgct gattgaccgc aatgcaacgc
    22801 atttatggaa accactgttg cacgaggtgg caaccggtac tattgatgag ggaactgatg
    22861 cgttaagcta tcgggctcac gctaaaaatc atagttttga atttcagcaa ggtacgctgg
    22921 tggcggtaga tagagagaag aaaacggttt cactcgcccc gatttataat gatcaaaacc
    22981 aacttctcgt taaagaacgc catatcagtt atgacaaatt agtgatcgcg atcggcagta
    23041 aatccaatga ttttggcacc aaaggggttg cagaaaattg cattttctta gatggctcag
    23101 agcaagcaaa agatttccaa aaacgaatga tggagctgtt tttacgtttt tcacatagtg
    23161 aaaataaaga tgtaaaaatt gcgattgtgg gggggggagc aacaggtatt gagctttcag
    23221 cggagcttta ccacgtggtg aaaaatttaa attcttacgg ctttggtaaa ttaaaccgtg
    23281 ccagcttgaa agtcacttta attgaggcag gccctcgttt gattccggca ttaccggaga
    23341 aagtgtcggt ttctgctttc cacgaattga aaaaagcggg tgtttcggtg cgtttaggta
    23401 cgatgattac cgaagctcgt ccagatgggc taatgacccg tttaggtgag aaaattgagg
    23461 cggatattat ggtttgggcg gctggcgtga aagcccctga aattacccgt gaatttggtt
    23521 ttgaaactaa ccgcttgaac caaattgaga ttaaagacac gctacaaacc accgttgatg
    23581 agtcagtgtt tgtcattggc gattgtgcat cattaattca agatggcaag ccaattccac
    23641 ccagagcaca agcagcccac caaatggcaa cccgatgtgg taaaaatatt gtggcattga
    23701 tagaaggaaa agagatgaag ccgtttcgat ttaacgataa aggctcactg ctttccttct
    23761 caaaattcgg cacggtgggt aatttaatgg ggaatttagt gagcggtgat atgtttattg
    23821 aaggtaaaat tgcccgcttg gcttacctct cgctttatcg aatgcaccaa gtggcattac
    23881 acggctgtgt caaaaccggc ttgattgtgt tggtagggca aattaaccgt ttcttaagac
    23941 caacaatgaa actacattaa acaaaaatcc gcatcaaatg atgcggattt tttatggcaa
    24001 aataacaagc ggttattttc ttgcctattt ttgcaaatac tcacgcctag tttgctaatt
    24061 taatttccgc caaccattta tcaattaagc gtttgccctc ttcgctggaa cctgcttttt
    24121 ggtaatcaat ttccacaaag tctaacgctt cggctttggt tgattgtgga gcaacttcgg
    24181 cgttgatgtt tgttggggtt tggtaaacac cgtgtttttt ccaaggaatt tcctgtgctt
    24241 cttttgaaag cacccaatcc ataaagagtt tggcgttatc taaattacgg gcatttttga
    24301 taatgctgac accgcctaac gcatagccca ctttaccttc cggaataatg gcttcaatag
    24361 gcgcaccttt ttctttttca gtggcataac tatgtacaaa gcctaccgta accgcacttt
    24421 caccacgagc aagattgctg gtgactaggg tgcttttcac atattgcgaa acgttattgt
    24481 tgagtttttt cagataatca aaggttttct cttcgcccca taaggttgaa agagtggtca
    24541 taaacgtata agtcgtgccg gagctacgag gatcaggcag ttgtacttca ccttttaagc
    24601 gaggatctga taaatcttcc cattttttcg gtgcctcaat gcctagtttg gcgagttttt
    24661 cggtattcac gcctaaccct aatacaagca tataaacgat agaggtaaat ttaccttgtt
    24721 cactttcaac taaggattta aattgtggca gaatttcagc ttgttttggt gaacggtagg
    24781 cttccagtaa gcctaattcg cctgcttgaa agtgaggttc aatcgtgccg ccataccaaa
    24841 tatctgcctg agggttcgat gcttccgctt ttacttttcc gaaaattgta ccggttccgc
    24901 cgtgaatgaa tttagtttcg acattatatt tgtgtgaaaa ttgcttggtc atttcttcac
    24961 aaacattatt ttgtaccgag caataaacag ttaaacgacc ttctgcttgt gctgcttgag
    25021 ctgataagaa aatgccagag gcgattaaga tcgattttaa tgagattaat ttgagtacgt
    25081 tcatcacttt cctgaaaaca taaaataaaa ggtagtgaag tctagcattt caaagcgctg
    25141 gttgaaaata gttaattgca atgaagtagg gcaattgtgc ctattacttt aatatttacc
    25201 aactatttgc aagttttagc aaaaaataac cgcttgtagt agctcttgct attttgtcaa
    25261 aattcagaat aataaatgcc tttagtctaa tgttaaattt tagttatgga aaatagttgg
    25321 aaatatgctt ttaaattaat cacgccgatt tttatgggct attttgcggc aggggttgct
    25381 tacggaatgc ttgccaccaa tgccggaatg cctgcgtggt ttacgattgt aatgagtttt
    25441 accgtggtat cggggacggc acaatatgca gcgattccat tttttgtctc cggtgttggg
    25501 gcggtgtcgg tctttctcag tacgctttta atgagtctac gttttagttt ttacacctta
    25561 aatatgatgg agcataagcc gatatccaaa gcgaaaagtc tggtcgctat tgcaggttta
    25621 actgatgaag gctttgcggt gttatcttca ttaccgaaag agcaaaagca agcattattc
    25681 ttgaaaatcg ctgtgctatg tgtggcttat tggacatttt ccacgattgt cggtgtgttg
    25741 ttaggcgatt cagtggcgaa ctatattccg catttggatt ttgctctgcc ttgtttgttt
    25801 gcaattttag cctatgagca atacaaaaac caaaaacaat ggaaaccgat tgtgattgcg
    25861 ttaatcggat ttttacttgc tcgtcagatt accgaaacca gcgtgttatt ggtggcaatt
    25921 ttagtagcga ttgtcattgt ggctttatta cctcaatctt cttcaatcaa actagagaaa
    25981 ggagtagaaa atgagcacaa atgatacttt gataatgttt gcagcattag tgctcggctc
    26041 gcaaatttgt cgttttttgc cggaattttt accgaaaaag gtgttatctt cgcccatttt
    26101 gcaaaaatta aacaaaatgt taccgcttgt gattatgctt ttattgcttt taacgagcct
    26161 aaactttcct aaaaacgggg aaggctttaa cttaatattg gcacaaattc tggctttaat
    26221 aggcgtatta ggtagctatg tttggcttaa aaataccttt ttaagcgtag cgttggggat
    26281 tttcggtgtg aatgtatttt tatccctgtt aggataaata ccaaaggtca ttttatagga
    26341 gcgaaacacc ttcgctcaat cattaacaga tgtggggcga aaaatttttc gccccttatt
    26401 tatcacaagc ggtctttttc tttcaatttt ttgcaaatta aatcgctaaa tcaaacgcat
    26461 agaaggcaac taaaataatc gcaataatta ctgtacctag gtttaattta ttggcttcgc
    26521 ctgaaattaa gcgaccaatc acaagggtgg cgaaacctag cataatgcct gtcacaatgt
    26581 tggcggttaa tacgatgaac accgcacaga ctaaacctga cattgcacct acaaaatcgc
    26641 tgaaatctaa tttagagaca ttacttagca ttaataagcc cacatacatt aatgccggtg
    26701 cggtggcata gcttggtact aagaatgcaa gaggttggaa gaacagcata aataagaaac
    26761 cgataccaac cactacagcg gttaaacctg ttttaccgcc aacggctgta cctgctgccg
    26821 attcaatata cactgccgct ggtgctgtac caaataagcc cgataaaatt gatccgaatg
    26881 agtcagaagt tagggcttta tcgccattga taatttgtcc gtctttatct aataaaccgg
    26941 cttgccctgc aaccgcacgg atagtacctg ttgcatcaaa aatagcggtc attactaacg
    27001 caaacactac cggtaaaatg gcggtattta atgctcccat aatatcaaga tttaggaatt
    27061 gcgaattttc accaaaactc ggcattttga aaaagcctgt gtattttacg ttagggtcaa
    27121 aaattaaacc tacgatggta atagcaataa tgacccataa aatactgcct tttactttca
    27181 gcttttctaa cccgataatg gcggctagac cgattaatga cactaaaacc ggaaatgaag
    27241 tgaagtcccc taatttaacc ggaatatcca taccgctatt gaccactaat ttaacgttag
    27301 tggcggcaat aatcagtaag aataaaccaa taccaattcc agcaccgtgg gcaatgctgc
    27361 ttggcaaatt acgtaaaatc caagtacgaa taccggtagc agaaatcaag gtaaatacta
    27421 cgcccattaa gaaaatcgcc ccgagtgcaa caggaataga aacttgttgc cctaatacta
    27481 agctaaaggc agtaaaagca gtaagtgaaa tcgcacaacc gattgccatt ggggcatttg
    27541 cccataaacc gattaagata gagccgagac ctgaaactaa acaggtggca ataaataccg
    27601 attcggcagg aaagcctgct tggcttagca ttcccggcac aacgatgacg gaataaacca
    27661 tggctaaaaa ggtagttaaa ccggcgatga tttcttgacg agcgtttgaa ccacgctcct
    27721 caaatttaaa taacgacata agaacctcaa aagaagaaaa tgaaagggga aattttagga
    27781 tgcggaattt tacagaaatt taaaataatt agcaaacgtt tgcgtaaaaa gtgaaagaaa
    27841 agcaggaata aatcctgctt ttgtttgatg gttagtaatc gatgaaagcg tcttgatctg
    27901 ccccttcctt ttcaacttta ggctgaacca tatgttcacg ttttagccca agttgtagtg
    27961 ccacaccaat tgcaatgtag atggatgaat aagtaccgaa accgataccg atcaataatg
    28021 caagtgagaa actatgaagc gttggaccac ctagatagaa taaggctagt accacaaaga
    28081 gggtggttac tgatgtcatt aaagtacgcg aaagtgtttg gctcaaggaa atatcgataa
    28141 tttcaattga gctggagcga cgaactttag aaaagttttc acgtacacgg tcaaacacca
    28201 caattgagtc atttaacgag taaccgacaa cagataaaat cgctgctaca aaggtcaagt
    28261 caatttcaat ctgtaagaaa gagaagattc cgatcgtcac taatacatcg tgaaataaag
    28321 ccacaatacc gcctaccgct aaacgccact caaaacgtgt tcccacgtaa ataagtagca
    28381 tagcaagtgt tgccaaagtg gcataaatag ccccttgggt tagctcttcc cccacgtttg
    28441 ggccaacgaa ttcaatgctc ttgatagtcg cattcggatc taatttttga tggatcatct
    28501 ccatcacttt attcccaaca gacatatcac cggcactggc ggcaagtcgg atcattaaat
    28561 ctttttgact gcctgtggtt tgcactaagg cattgccgta gccgctattt tcaagctccg
    28621 tacgcagttt tgctaaatca gcaggttgtg aaaattgagt ttcgattact gtcccgccgg
    28681 taaaatctaa cccccagtta aagccttttg tcgcaatagt aaaaatgcat aaagcagtta
    28741 caatcagcga aaaaatgaat ccgacatagc ggtatttcat aaaggggatt aatttataag
    28801 gcagtttaat ttctgctaca tcttgttgta cattttcaat agccattttt ccaccttaaa
    28861 tccaaagttt cttcacgcgt ttgccaccgt aaacccagtt tacaagcatt cgagtacctg
    28921 taattgcggt aaacatagaa ataattaccc ctaatgcaag cgttaccgca aagcctttta
    28981 ccggacctgt acctacacca taaagcacaa gagaagtcaa aatagtggtg aggttggagt
    29041 caaaaatact tgagaatgcg ccattataac cttcgtggat tgcttgttga attgggcgac
    29101 cgttacgaat ctcttctttg atccgctcgt agattagtac gttggcatca actgacatac
    29161 ccacagcaag tacgataccg gcaattcccg gcatagtaag ggttgcaccg attaatgaca
    29221 ttaaaccaat cgttaagatc atattcacaa tcaaggcaag agaggcaaat ataccaaata
    29281 ctttataaaa ggctagacag aacaggatcg ttaagcctaa gcctaaaata ctagcttcca
    29341 taccttgttt aacattatct gccccaagag aagcaccgat agtacgctct tccacaatca
    29401 cgattggagc aatcaacgca cctgaacgta ataataccgc aaggttttga gcttccgctg
    29461 gtgaattaat ccctgtaatc tggaattgat tacctaaacg ggtttgaatg gttgcaacgt
    29521 taattacctc ttggtgtttt tctaaaatga ctttaccgtt agcatcttta cgacctgaat
    29581 ctttaaattc ggtataaagt gttgccatcg gtttttggat tgccatttta gtaatttcac
    29641 ccatcatctc gccgccttcg gtatcgagtc ggatactcac ttgcggcaag ccacgctcat
    29701 cagtgcctga ggttgcatca ataatatgtt caccccctaa cgaaggttta cggcgtaata
    29761 caactggctc gccatcacgg gtgttttgca gtcctgaatc agccggcaca atgcctttcg
    29821 ccgcagaggc cacattggct tcggtattga ctaaccggaa ctcaagggtt gcagttgccc
    29881 ctaaaagctc tttggcacga gcggtatctt gcacacccgg taattcaact acgatacgat
    29941 ctgcaccttg acgctgaatg gtcggctcag aaacgcccaa ttcctcaaca cgtttacgca
    30001 aaatagaaag gttttgttcg attgccatcg tgcgagattc agaaagagct tgtgctgatg
    30061 gcgttaaggt gactttatta tcatttacca aaatatcaag cgttgggtga gagagacgca
    30121 ctaaacgcac tgctttttcg gcggtatcgt tatcggcaaa ttcaacctca gttgcaaaat
    30181 tttcgccttt tttgaccgct tgatattgca atttttcttt acggaaatca ctacgcaggc
    30241 tgtcttgcaa agtgtcttgt tgttttgcaa gcgccgtgtt catatccact tccattaaga
    30301 aacgaacacc gccaagcaag tccaagcctc gcttcatcgg gctaccgcca atgtcagaca
    30361 accactgtgg cgttgctggt gcaaggttta aggcaacaga gtagttattc cccaatgctt
    30421 ctgagatttt ttctttggca ggcaattgct gttcgctgct ttcgagacga accaaaatcg
    30481 agccattttc taacacggca gatttcggct gaatattcat tgctgaaagt gtggattgca
    30541 cttgagacag tgtctcaggt gtggcttgtt gcccacgagt accggaaatt tgtaccgaag
    30601 gatcatcgcc atataaattt ggaagggcat ataaagcacc aatggcgatc acgaagatca
    30661 ccattaaatt cttccataga gggaaacggt ttaacacaat aactccccga atgttaaagt
    30721 tggataagag ggttgattaa agtgatttta atgaaccttt tggtaacacc gcaacaacga
    30781 aatcacgttt gatggtcact tcagttgtgt catttaatgc aatcacgatg ttatcgttat
    30841 cagcggtcac tttggtaatt ttaccgatta aaccaccgct ggttaatact tcatcgcctt
    30901 ttgtcaagct tgccagtaaa tcacgttgtt gtttttggcg ttttgcctga ggacgataaa
    30961 tcataaaata gaaaattgca ccgaaaataa tcaggataaa gatcatttcc attccgccac
    31021 cttgttgcat aaaaactcct taaatgtttg agtggtataa aaataagtgt tataaaaaac
    31081 gcctgttaaa ataccataaa ttcaatgaat taacgagtag aaaaattcat cgaatgcttt
    31141 tcttttaaac aaaaatttga gtagaatcag cacttttagt ttaggattag gttcttggcg
    31201 tgttcttgcg ctgacacaat aggagaaaaa atgaaaaaat tattcgctca agcggttatt
    31261 tttggggctt tttttgcaag ttccgctttt gctcacaatg tgcaattaaa tcaagcatta
    31321 cctgctgttt cggttgcaaa agacggggaa ttggcagtgg caggtggaaa ggttagctat
    31381 aaaaattggc attcatcatc tctggcaggt aaagtccgtg ttattcatca ttttgccggt
    31441 agaagttcgg tgaaagaaaa aaatgaagat ttgatgacag caattaaaaa tgccggtttt
    31501 gatcgctcga aataccaaac ggtgacgatt gtaaatgctg atgatgcgat tgtcggcaca
    31561 ggggtatttg tgaaaaatag tgtggaaaac ggcaaacttg acaatcctca cagccaagta
    31621 gtgttagacc agcaaggcag tgtgaaaaaa gcgtggggct taaaagagaa agagagcttt
    31681 attgcagtgc tggataaatc gggtaaggta caatttacct ctgagggcaa actctctgca
    31741 aaacagattc aagaagtgat tgggttggtg aaaacattaa cgcaataacc agtgttttta
    31801 tgggcggatt ttgtatccgc ccatcattct agataataaa tcgataactt atcgtgtgat
    31861 gatactcttc tcctgctttt gttatcccgc caaattggag taattcaggc tggtttagtg
    31921 aatttgggaa aaactcaggc tctaatgcta caccagcgta atcttcatat tcgcctttag
    31981 tcaaattagg ttgtcctttt agccagttgc cggtgtaaag ttgtaatgct ggcatggagg
    32041 tgcggagttc catttttaag tcttccacgg ctaaacaagc ggtcggattt tcactatttt
    32101 ttgcaagatg aaaggagtga tcgtaacctt ttaccgcttt ttggtcgtca tcagccaata
    32161 aatcttgccc aattttttta gcattgcgga agtcaaaact ggtactctcc acttttttca
    32221 gtggagcatt aggaataccg ctggcatcaa ccggtaagta tccgtctgca ttaattatca
    32281 gctcgtgatc taaaatcgtc tctgaacctt gcaaattaaa ataggcgtga ttagttaagc
    32341 aaagcggtgt atcttggtta gcaacggcat caaagctgat ttgaagctca ttctctgtta
    32401 agcgatactc cacaaaagct ttcacttcgc cgccaaatcc ttcctcgcca tctgcaaaaa
    32461 aataactaaa tttgaccgct tgttcgcttt ggctttcaag ttgccacact attttatctg
    32521 ccccaagctc gccaccgtgg agattatgtt caccgttatt tttagcgagc tggtaggttt
    32581 tgccgtttaa gcgatattcg gcattggcaa tgcggttagc gtaacgccca atggtcgctc
    32641 caaagaaagc ggtctgtttt tgccaatttt ttgcagacgt ggtgactaat acttcccgtt
    32701 cctcgttcgg cattttgaca atgcacgaaa gccaagaagc cccaacatca gaaagggtaa
    32761 tgcgtaaaaa cgcattttca agggtgaata atttcatcgg ttgaccttaa ttacctagca
    32821 cggcatagcc gtactaggtt aagcataatt cagccctgct agggctgagg ttatttattt
    32881 tagagtagcg gagctacttc cttatgctta acccggtacg ctttagcgtg ccgggcattc
    32941 tcgcacccca tcggaggcag tacaaacgtg gaaggtttct ttaatgccgg tttgcttttc
    33001 gtaattgtta gcaacggctt ggcggagatc ttccactttg tcatttggca ctaggcacac
    33061 gacacaaccg ccaaagccgc cgccagtcat tctggctccg ccgtttttac cgatagcttg
    33121 ttgggcgatt tcggctaagc aatccacttc agggcaggtg atttcaaaat catcacgcat
    33181 tgagtcgtga gattgagcca tcaactcccc gagtttgacc atatcattcg cttttaaggc
    33241 ctctactgct tccagaactc gttgattttc gctgatgata tgttttgctc gtttatacgc
    33301 cagctcattc tcttcactaa gttctgaggc tcgttcaata aattgttccg ctgtgacatc
    33361 acgcaatttt gctttgccga agaagtgggc ggcaaattcg cactgttcac ggcgactgtt
    33421 gtattcgccg gtaaccaagt cgtgttttac gttggagtta ataatcgcaa tcgaatagcc
    33481 ttgtggcaca ggggttgggg tgatttctaa actacggcag tcgatcatca ctaaatgatc
    33541 ttgttgcccg agagcggagg tgagctgatc catattgccg cagttgcagc cgacaaattt
    33601 attctcagcc tcttgcccga ttaatgcgat ttgcggtaaa gaaagcggta aatcgccgag
    33661 taattgagcg gttttaccaa tcgacacttc caatgcggcg gaagaactta aacctgatga
    33721 catcggcaca tcgctggtaa tggctaaatc tgctccttgt ttgaattcgg ggtgtttggc
    33781 ttgaataaat ttcaccacgc cacgcacata attcgcccat ttttgctcgc ttggctcaat
    33841 cgcctggctt aaatcaaatt catcttgttg gttgagatca atggcgaaca cccgccattt
    33901 gttgtcacta cgtttggcaa agctaaccgc tgtgccgtaa ttgatggcac aaggcattac
    33961 aaacccatcg ttgtaatcag tatgttcgcc gataatattc actctgcccg gggcaaatac
    34021 cgtgcgttct gctttataac caaaatgttg ttcaaattgt tgcaaagcga tttcttgtgg
    34081 tttcatttca attccttatt tatctttata gtgtttggta tcacttactg catttaaacg
    34141 ttcggcagct tgttccgggg ttaaatcacg ttggctttct gccatcattt cataaccgac
    34201 cataaattta cgcactgttg ccgaacgcaa gagcggcgga tagaagtgag cgtgtaattg
    34261 ccagtgagca ttttccttgc cgttaaacgg agcgaagtga aagcccattg aataaggaaa
    34321 gctgatgtta aacagattgt cgtaacgggt ggtgagcttt ttcaatgcaa gggctaaatc
    34381 cgctttttcc gcttcgttta aatcggtaat ggatttgaac tgcttggctt tcggcaacag
    34441 caaggtttca aacggccaag ccgcccagta aggcacaacc gcaatccaat cttcggtttc
    34501 tgccacaatt cgctcttgtt tgtctaattc acgttgtgcg tagtcaagca acagtggcga
    34561 gccatattga gcaaaatatt tcgcttggca ttcgtcttca atcgcaattt cattaggtag
    34621 aaaattactt gcccaaattt gcccgtgtgg gtgagggtta gaacacccca tcattgagcc
    34681 tttgttctca aaaatttgca cccactgata atgctctttc agctcattcg cttgctcttg
    34741 ccaaactgtt accacatcag taatttcctc gatggaaagt tgcggtaagg ttttactatg
    34801 atcaggcgaa aaacagatca cacggctttc gccttgtgta tgagaaatct gaaacagcgg
    34861 atcatcattc ggtattggtg ccggtgtgtc tggtagcagg gcagagaagt cgtttttaaa
    34921 cacaaacggc ttggtgtaat tcgggttttg ttcgccggta atccgcttat tgccggggca
    34981 gaggtaacaa cttgggtcgt agctcggttt ttcatcttgc acgatttctt cttgttgccc
    35041 ttgccacggg cgttttgccc gatgcggaga gactaaaatc cattgatttt ttaatggatt
    35101 aaaacgacga tgtgggtgat cgttgaggac aaattcgctc atataaaact cctcgaaatt
    35161 agttatgtaa agagtatagc gaaagtcaga caaaatgact gtgacatagc tcacaaaata
    35221 atgatgtcaa gcggtcaaat ttcagaaaaa ttttgcaagt tttcctccat tttgcgattt
    35281 aaggtagctt acgtggaatt gaatgtggct tttggtagaa tagatgaata tgcaagatat
    35341 taagacaaaa atagatggaa agactgaata aatttgatgc ttggttaatg aatcataaac
    35401 ctaatgctag gttaagcgga gcgagtcgtt tgttgacaga gttttggttc tttgggttaa
    35461 aagaagctag agcctgttta tttgcgggat tattttttat tgcgatgttt tcggtaccaa
    35521 aaacgggatt atggggctta cctcgttatg atattttgct gatttttgcc atagtggtgc
    35581 aaattgcaat ggtgaaactg gggctggaaa cgtgggacga gctaaaagca ataagcctat
    35641 ttcatttggt tggttttgtg ttagaagtct ttaaaacatc gagtaatatt caatcttggg
    35701 catatccgga ttttgcctat actaaattgt tcaatgtgcc attatttact ggttttatgt
    35761 atgcagcagt tggttcttac attatccaag cgtggcggtt gtttgatttg aaaattaaaa
    35821 gccacctgcc ctattggtta gccactttaa cggcactgat gatttacctg aatttcttta
    35881 cgcatcatta cattggggat taccgttggt atattgccgc ttttgcatta gggctgtatg
    35941 cacgtacttt tgtatttttc accccttatg acattacacg aaaaatgcca ctgctgcttt
    36001 ctttcttcct gataggtttt ttcatttggt tggcggaaaa tatcggtacg tttgccggaa
    36061 tttggcgcta cccgaatcag tttggggctt ggtctatggt gcatatgagc aagtggagtg
    36121 cttgggcgtt attggtgatg atgactttta ccatcattgt gcatttaaag catatcaagc
    36181 aaacagtcag agtctcgagc gattaacaag ctgtgggttt tggcgaaaat tttactcatc
    36241 agttattttc agtggaatta ggggcaaata ataatttgcc cctatatcaa attatggatt
    36301 ttccccttcc acatcaataa tcatcacttc cgactgtgag cctaaccgca tcggcacgcc
    36361 ccagaatccg tagccggagg tgacaaaata atgcccgaag ccgatttttt catagccgta
    36421 atgtaatcga tagatcagtt tggtaataat acttgcaggg aacacttgcc ctttgtgagc
    36481 gtgtcctgaa acttgaatat caatcggcaa tttagcatgt tgctcaattt cagtcgggcg
    36541 gtggtcaagc aaaattaccg gtagtttagt gttcacgttt tgtaaaagct gttcggcaga
    36601 aggtcgattt ttgactaaat catcattacg cccaataagg gtaaattttc cgttaatttc
    36661 ggccgtttga tcccataaaa cagtaatacc ggcgtcggta atttcttttg caatcgtttc
    36721 ttgagcccca aaaaagtcgt gattgccaag ggtagcatac acgccaagag gagcttttaa
    36781 tttggctaaa tgaggctgca ttttatcggc aacataaact tcggtattgt cgtccataat
    36841 atcgcccggc aataaaatca gatcgacttt ttgctggttg aaaatctctg ccagttggtc
    36901 aagttgcttg gttccgaaca gttttcctaa atgcagatcg cttgccatac caatgcgaag
    36961 cggtttctct aatggtttat ccaatttcac cgaataatgt actactgttg gggtataagc
    37021 gttgtaatag ccaagcccaa gtaagccaaa gaatgcaaat gggtaggcga ttttcagcca
    37081 gcgattgacg gtagtattgc cgttgaatat tttgtaaata caagcggtga aaaaactgat
    37141 aaaaaatgca aaaagtaaca ataccaatat gaatgccatt attctaaata gcgcaaaagt
    37201 acgagtaaga tgcaaaatca ctaatccgtt tgcgactaag aaagtgagaa taccaactgt
    37261 tttacggttt ttacttgata aattaaataa ccagctgaca gtctttgcaa agttgaataa
    37321 aaagagttgt aacaccgcaa tcacaagggc ggtggtaatg tagtaacgat attccatatt
    37381 tttccttcaa taaattggct aaacccagcc gatttgtctt aataaaaata agccgatgct
    37441 ggcactaaac attgagccga gagtcgtaat gccgatcaga tttgcggctg cctcgccgtc
    37501 tccgccatag ttgcgtgtca ttgcgtaggt ggctgaagca acgggagcag aagcagccac
    37561 aaagacaatg cctagttcca tcggcggaag ttgaaacaca aatttcccga gtagtagcaa
    37621 gaaaattgga gcaaaaatca gccgaatcga ggcagaaaac agcacaattt tattgatggt
    37681 gctttccact ccttgattaa attgtttcaa ctgtttgaaa ttaatgcttg ctccggtgca
    37741 gataagtgct aatggtagtg tcaggctcgc cattaattta ccagcagact caagcggggt
    37801 tggaatttgg tggcttaatt caaaatagtt aaaagttaag cctgcaatga cggctagaat
    37861 cagcggattt ctcaatatcg acaatattaa tctgccaaaa ttcacttttt tctcgcttaa
    37921 cgatgaagtg agggtaatca ctgcaagcac attaaaggta atcaccaagc acgaaatata
    37981 aactgaagcg gcagcgagag ctttatcgcc ataagcattg agaattaagg caatgcctaa
    38041 aatcgccgca ttggtacgga aagtgccttg agtgaaaata caacgataac ggcggttttc
    38101 aatatgtcga gccgcccacc attccgccca taaatagatc aaaatcgaac cgccgactcc
    38161 ggtcgagatc aggttgattt ggctggagaa atctaacggg ctttttagca tattcaagaa
    38221 aatcatcggt ggcagggtaa aattaaatac cacctttgat gccatattgc aaaaggtatc
    38281 gtcaataaat tttcgtctgc gtggaaaaat accgaacagc attaacaaaa tggttggtaa
    38341 ggtaacgcca atgctaaatt ggatagagtc gaaaagcata atgtttgcct taaatgatgg
    38401 cacgagtgtc ttttgcttgt accgtagatt atcaataaag taccagcgtg gacgctggta
    38461 ctatcatcaa tggaaatgaa attacaatcc tgcctttaag cttgcttcga caaatttatc
    38521 caaatcaccg tccagcactt gttgggtggt gcgatgttcc acaccggtac ggtggtcttt
    38581 aatccgtgaa tcgtctagca cataagagcg gatctggctg ccccagccga tgtcggattt
    38641 gttgtcttcc atcgcctgtt tttccgcatt tttcttgctc atttccagct catatagctt
    38701 cgctttaagc tgtttcatcg cctgatcttt attttgatgt tgtgaacgac cgttctggca
    38761 ctgcaccaca atgccgctcg gtatatgggt aattcgcacc gccgattcgg ttttattgac
    38821 gtgctgacca cccgcccctg aggcacgata cacatcaatc cgcaaatccg cagggttgat
    38881 ttcaatatca atatcgtcat cgacttccgg ataaacgaaa gccgccgaga acgaggtatg
    38941 acgaccgtta ttggcatcaa acgggctttt acgcaccaag cggtgaatac ccgtttcggt
    39001 tctgaaccag ccgtaagcat agtcgccgga aattttcacg gtggcggatt taatccctgc
    39061 cacatcaccg tctgaggctt ccattagttc ggctttaaac cctttgctct ctgcccaacg
    39121 caaatacata cgcagtaaca tttctgtcca gtcctgagct tccgttccac ccgaaccggc
    39181 ttgcaaatcc aaatagcaat cggcactgtc gtgtgggccg ctgaacatcc gcttaaattc
    39241 taaatcggca agttttttct ctaattcgtc tgcttccact tgggcttcat tgaaggtatc
    39301 ctgatcttct gcttccaccg ccagctcaat caacccttca acatcttcaa tcccttgctc
    39361 taaggcttta atcgtattga cgatctgctc caacattgcc cgctctttac caagcgcttg
    39421 tgctttttcc ggcttgttcc atacatcggg ttgttccagc tcggcattga cctcttctaa
    39481 gcgttcgact ttatgctcaa agtcaaagat accccctgat caccgcggtg cgctcgctta
    39541 aatcagttag ttggttttta attgggttta attcaaacat tgtcgttcct gtttttgctt
    39601 attttaaaaa gatgaattat agctgaagtt aagcaagcgg tcgaattttg caagaaatgg
    39661 agcaatgatc gtttctagta atgagatttg gttcataaaa gttgcaactg tttctgctat
    39721 ttggctttga tagctaaaaa tctttaaaaa aacaagcggt cgttttaccc cattttttgc
    39781 aaaacgaccg tagcttcttg ctataatcgc tgaaaaaatg ctgcaaggag attttatggc
    39841 aaagcgccca agtgatattg atgcaaccct attgcaactg gaaatcctac gccgtatccc
    39901 caaattaccc gctaaaattg atgctaaaag tttgcaccaa cagctattag atgccggctt
    39961 tgaacgggat attcgcactg ttcagcgttc gctcaaaatg ttatgcgagc attttgatat
    40021 tgaatgcgat gagcggagca aaccctttgg ttatagctgg aaaatccgct cagaggggct
    40081 ggcattgccg attctcaacg aacaacaatc attactgcta aaacttgccg agcaacagct
    40141 gaaatatctg ttacccgcaa atttaatggc atcaatgaaa cccttttttg agcaggcaga
    40201 cagaatggtt tccggggcga aagacaagcc cgaataccaa tggctaaata aagtttgctc
    40261 cacgccaacc agcctaccgc tgatccctgc aaaaattaaa gaagagattt ttaattccgt
    40321 aagccaagcc ttatttcaaa ataagttgtt aaagatcgaa tatcagaacc agcacggcaa
    40381 aaaacaccaa gcgacaatta tgccgttggc gatttcacaa caaggtgcga gcatttattt
    40441 ggtctgccgt tacgaagggt ttgacgacaa ccgcctgttg gctcttcacc gcattcgtaa
    40501 agcggagatt tctactttta gttttgaacg cccgaaagat tttaatttgc aagcctacca
    40561 agatgccgga cacctcggtt ttggcaatgg cgaaaaagct agccttacct tttcgattag
    40621 cagagacgcc ggtttccatt taaccgaaac accgcttgcc aaagatcaaa aaattctcga
    40681 ggagagtgaa actcactacc gtattcaagc catagtcgct gataatgata tgctaacctg
    40741 gtagctacgc aaatttggcg aagatatttg ggatatcgag aaagaagcgc taaaataagc
    40801 taaacaagcg gtcggttttg tgggaatttt tgctaaatag tatcgaccgc tcctccctaa
    40861 acagaccttt atcataaata caactctttc aatcagatat tcttactgtc tattgatgaa
    40921 cgattcgaat ttttctagtg gttgaaattt aaactaattt tcttgctttt tggcattttt
    40981 cagactttta attctctcca ttagcctgtt tttttacgct ctttttcata aacaggaata
    41041 accaatgcct tttcaactta ctttctgcca acaagccggc aatcagcacc agaaaaatca
    41101 agatgcactg tttaacggca aagcggtgta ccaatggcaa cttaaaaatg ccgagagtta
    41161 tctgctggat aacgacaaag taatttttgg ggttgcggac ggcgtttcca gccaccctcg
    41221 aaatcatctt gcctcacatt atttaatggc gttactcagc caatgccaat cccttgatag
    41281 ccaatggttg cgacaggctc acggcgattt ttgcgaaaaa ttagcgaaag attattttgg
    41341 tgcttcttgc acttttgttg cttgtgaatt acaccataac ggcagagggc gtatggttaa
    41401 tgtgggcgac agtcgagcct ataaaattac ggcaaacggg gagtggcaac aactgagttt
    41461 tgatcacacc atactggctg aaatgaaaca gaaaggcttg gttaaggaag ggagcaacta
    41521 tgcctcaatg tataacggct taaccgattg tattgttgcc gattttgacg ccgatgattt
    41581 ccgcattcat atagccgaat ttcaactgga aaaaggcgag agcattttgc tctgttctga
    41641 cggtttgcac gaacaactcg ccccagaagc tattcaggcg atttaggacg gatacgaaag
    41701 cccgtctcat cgtctgcaaa tttgcagaaa aatggtaaaa atgcaccgct tgtatgacga
    41761 tttttctgcg gtgatttgtg aaattgtgta attaaaacga cattatttgt cgcattggtg
    41821 cttaaaatcc gcataaaaca gaggagaaaa aaatgaaaaa cgatttccat tatgccgctg
    41881 aattaatccg caatgcagac ggcattttaa ttaccgcagg ggctggaatg tcggtggaca
    41941 gtggcttgcc cgatttccgt agcgtgggag ggttatggaa ttcctaccca ccgctcaaaa
    42001 aatttaattt gcaatttatg cagattgcca caccgcttgc ctatcaggaa cgccctga
//
LOCUS       DANLVT010000006        41726 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.006, whole genome shotgun sequence.
ACCESSION   DANLVT010000006 DANLVT010000000
VERSION     DANLVT010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 41726)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 41726)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..41726
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.006"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            278..1822
                     /gene="leuA"
                     /locus_tag="PXC99_000278"
     CDS             278..1822
                     /gene="leuA"
                     /locus_tag="PXC99_000278"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HDL5416775.1"
                     /translation="MSNNNIIIFDTTLRDGEQSLKASLTVKEKLQIALALERLGVDVM
                     EVGFPVSSAGDFESVQTIARHIKNSRVAALSRAVAKDIDAAYEALKVAEAFRIHTFIA
                     SSALHVEAKLKRSFDDVVEMAVAAVKRARNYTDDVEFSCEDAGRTGIDNICRIVEAAI
                     NAGATTVNIPDTVGFCLPNEYGNIIHQVMNRVPNIDKAIVSVHCHNDLGMATANSLTA
                     VQNGARQIECTINGIGERAGNTALEEVVMAIKTRQEFMGVDTRINTQEIHRVSQMVSQ
                     LCNMPIQPNKAIVGSNAFAHSSGIHQDGMLKNKNTYEIMSPETIGLKKEKLNLTARSG
                     RAAVKGHMADMGYTETDYDLDKLYEAFLQLADKKGQVFDYDLEALAFIDMQQGDEDRL
                     KLDVITTQLISGLPASAFVQVELDGVRQSATSQGGNGPVEATYNAIMNIVGMELKMSH
                     YNLTAKGEGAEALGQVDIVVEYEGRKFHGVGLATDIVESSARALIHAINAIYRSQKVA
                     DLKAKK"
     gene            2044..2616
                     /gene="rpoE"
                     /locus_tag="PXC99_000279"
     CDS             2044..2616
                     /gene="rpoE"
                     /locus_tag="PXC99_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000003307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoE"
                     /protein_id="HDL5416776.1"
                     /translation="MSEQITDQELVEKAQKGDKKAFNLLVVRYQNRVAGLLTRYVARD
                     DIPDIVQESFIKAYRSLESFRGESAFYTWLYRIAVNTAKNHLTSLGRRPPKEDILAED
                     AESYDVGAQLRESDTPENLILSEELKKVVFDTIENLPDELKTAIRLRELEGLSYEEIA
                     EVMECPVGTVRSRIFRAREAIDAKIKPLMQ"
     gene            2662..3285
                     /locus_tag="PXC99_000280"
     CDS             2662..3285
                     /locus_tag="PXC99_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5416777.1"
                     /translation="MQERITQQNERLSAYMDGQNVDTAFVETLTNSPELQQKWASYHT
                     IRSVMQGDEIILGRDFSAKMEALLENEEIESQANVEKPKGLLLKLKRWGTPIMQAGIA
                     ASVCLVAVLGVNSMNASDEIAQTQQPVLQTLPFSNSVEAVSYNAPVQDQPTEEQLELQ
                     QRKINALLENHELQRRTNNVKNLTLSEEEKQKAQTSSNTESEPNIQK"
     gene            3443..4426
                     /locus_tag="PXC99_000281"
     CDS             3443..4426
                     /locus_tag="PXC99_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucB/RseB C-terminal domain-containing protein"
                     /protein_id="HDL5416778.1"
                     /translation="MLFKIKKYLLLFWVISACYTFAWAESTIKTPLAYLTAMSEAHKK
                     STYELVYILQQGSDTESFRLRHAFTHNKEYAQLLNLDHSREEIILKNNKVSYLGYNFR
                     PFSLNSSQILDNLPNVLYTDYANLKGYAFLDAGKDRISDRITKVIRMKPNDTLRYAYI
                     LWIDEETHLLLKSQVLNMDNLVLEEFRVLQLYQSPELDRIANVIESLMLPTLTTVKKE
                     EFPKSDGWQVKWLPTGFRLIQQQTVTGATYQVESEYVDSRVYSDGLSTLTIYIMPSQG
                     VSFNEYAWQQGKLTILNQTINDRDIVIIGDVPLQSAKQIMNNIGFKEGAQP"
     gene            4423..4887
                     /locus_tag="PXC99_000282"
     CDS             4423..4887
                     /locus_tag="PXC99_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SoxR reducing system RseC family protein"
                     /protein_id="HDL5416779.1"
                     /translation="MMIEQATVVEYQNGVAIVQCYAKSSCGGCVAQSACGSKALSALA
                     GEKIDPRFRIEVDEPLKVGDKVELGLAENILLKSVFLIYGIPLLVLVMTAVGFSQFFA
                     NELIVLFIMLLSTGITFWAVRKLIHKHSKQANFSPIFLGKVLGDYNGKNMAK"
     gene            4865..6550
                     /gene="fadD"
                     /locus_tag="PXC99_000283"
     CDS             4865..6550
                     /gene="fadD"
                     /locus_tag="PXC99_000283"
                     /EC_number="6.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain-fatty-acid--CoA ligase FadD"
                     /protein_id="HDL5416780.1"
                     /translation="MEKIWLNNYPPYSPKTIETDQYESLVEMFEAAIQRHPDIPAYIN
                     MGQVLTFRKLEERSRSFAAYLQNELRLKKGDRIALMMPNLLQYPIALFGALRAGLVVV
                     NVNPLYTPRELEHQLNDSGAKAIVIVSNFAATLEKIVFNTEIKHVILTRMGDQLSFGK
                     RTLVNFVVKYIKKLVPKYKLPHAVSFREALSIGKQRQYVKPNIVSQDLAFLQYTGGTT
                     GVAKGAMLTHQNLIANMMQAKWIVEPLLGNSANMIGLVPLPLYHVLALSMNCLLFIEL
                     GLTGLLITNPRDIPGFIKELKKYKVSVITGVNTLFNALLNHESFKEVDFSHLKLSVGG
                     GAAIQSSVAKRWHDLTGVHIIEGYGMTECSPLISATRGDSVEYSGSIGVPVPNTDIRI
                     VDDEGKEVPLGERGELVVKGPQVMQGYWNRPDETAQVLQDGWMATGDIVVMGDDLNLR
                     IVDRKKDMIIVSGFNVYPTEIEEVISQNPKVNEVVAIGVPSEASGESIKIFVTKKDES
                     LTRDELRTYCRQFLTGYKIPRDIEFRDELPKSNVGKILRRVLRDEELAKVNKA"
     gene            6575..7204
                     /gene="upp"
                     /locus_tag="PXC99_000284"
     CDS             6575..7204
                     /gene="upp"
                     /locus_tag="PXC99_000284"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HDL5416781.1"
                     /translation="MKIVEVKHPLVKHKLGLMREAEISTKDFRELANEIGSLLTYEAT
                     KDLEMESVEINGWSGEKIAVERIKGKKVTVVPILRAGLGMMDGVLEHIPSARISVVGI
                     YRDEETLKPVPYFSKLANDVDERLAIITDPMLATGGSMVATIDLLKKAGCKQIKVLVL
                     VAAPEGIKVLEAAHPDVELYTASIDSHLNENGYIIPGLGDAGDKIFGTK"
     gene            complement(7315..8181)
                     /gene="rsmA"
                     /locus_tag="PXC99_000285"
     CDS             complement(7315..8181)
                     /gene="rsmA"
                     /locus_tag="PXC99_000285"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HDL5416782.1"
                     /translation="MSSTNSKKHLGHTARKRFGQNFLHDMNIIHSIVSAINPKNGQFL
                     LEIGPGLGALTEPVAELVDKLTVVEIDRDLAERLRHHPFLNQKLTIIEQDALRFNFRD
                     YFNQLNLDEDSVRVFGNLPYNISTPLIFHLLTFHDLIQDMHFMLQKEVVKRLCAAPNS
                     KAYGRLTIMAQYYCQVIPVLEVPPTAFKPAPKVDSAVVRLVPYNQLPYPAKDVYWLNR
                     VTTQAFNQRRKTLRNALSTLFSAEQLDALGVDLTARAENLTIADYVRLANWLHDNPPA
                     IDTTEELVDEDC"
     gene            complement(8243..9193)
                     /locus_tag="PXC99_000286"
     CDS             complement(8243..9193)
                     /locus_tag="PXC99_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDL5416783.1"
                     /translation="MKMKLVKSLFAVAVATMSLTQTAHAFEERVVALVNDTPIMQSQV
                     QRVLGKKKATETAQRAAIDQVIDDMLVQQAMKEAGVKVSPAAVNQAVENVAIQNGITY
                     GQLLDALDYQGITLEQFKRNIAQQMAMEQVRHISISKSIQVAPQQVQALAKELMAKDK
                     AAGKLKTVSGKEHRISHILLKTNPILNDAQAKAKLSSLTTDINSGKISFEEAAKTHSV
                     DYASGADGGDLGFNFLEIYDPAFANVASKIKPNQISAPFKSQFGWHILKVTDTRNGDR
                     TEDAYHQRAYQQLVNKQAEEASKDWVKALRKTANIQYVGQ"
     gene            complement(9266..9820)
                     /gene="pyrR"
                     /locus_tag="PXC99_000287"
     CDS             complement(9266..9820)
                     /gene="pyrR"
                     /locus_tag="PXC99_000287"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HDL5416784.1"
                     /translation="MAREKIIIDTEQFQRTISRISHQIIEKHGDLQDVVIVGIKRRGA
                     EIAELIQKRIEDLAQTRLPYMALDITFYRDDLDLIYQDPVFMGADNQLNLNGKKVILV
                     DDVLFTGRTIRAALDALLDFGRAARIELVIFVDRGHRELPIRADYVGKNIPTAKNEQI
                     QVQTLSYDGINQVVLVPAANKESA"
     gene            complement(9834..11261)
                     /gene="hldE"
                     /locus_tag="PXC99_000288"
     CDS             complement(9834..11261)
                     /gene="hldE"
                     /locus_tag="PXC99_000288"
                     /EC_number="2.7.1.167"
                     /EC_number="2.7.7.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase/D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase HldE"
                     /protein_id="HDL5416785.1"
                     /translation="MMMQYSPKFNNAKVLVLGDVMLDRYWFGATNRISPEAPVPVVKV
                     QDIEERAGGAANVAMNIASLGVPVTLHGLIGDDDAGRALDKLLNSHQIQNHCVVINSH
                     PTITKLRILSRHQQLLRLDFEEGFHNVDSTALLAKLSQEITAYGALILSDYGKGTLES
                     VQQMIQIARNAKVPVLIDPKGTDFERYRGATLLTPNMSEFEAVVGHCKDEDEIVSKGL
                     KLIADYDLSALLVTRSEKGMTLLRPNHEPYHLPTQAKEVYDVTGAGDTVISVLATAIA
                     DGRAYEEACYLANAAAGVVVGKLGTSTVSPVELENAIHQRTATGFGVVSEAELKAIVE
                     EAKKRGEKIVMTNGCFDILHPGHVSYLENARKLGDRLIVAVNTDASVKRLKGEARPIN
                     DLAARMAVLAGLASVDWVVPFDEDTPQRLISEILPDLLVKGGDYKPEEIAGSQEVWAN
                     GGDVRVLNFENGCSTTNVIKKIQAL"
     gene            complement(11357..12892)
                     /gene="der"
                     /locus_tag="PXC99_000289"
     CDS             complement(11357..12892)
                     /gene="der"
                     /locus_tag="PXC99_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HDL5416786.1"
                     /translation="MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGH
                     ANIAGYDFIVIDTGGIDGTEEGVEEKMAEQSLLAIEEADVVLFLVDARAGLLPADVGI
                     AQYLRQREKTTVVVANKTDGIDADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIEQVLA
                     PLGEQLNAEQFNQEQAGENAKNVANEETDEWDTEFDFENEEDAALLDEALAEEAEESI
                     EDKNIKIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIID
                     TAGVRKRGKVNLAVEKFSVIKTLQAIQDANVVLLTIEAREGISDQDLSLLGFILNAGR
                     SLVIVVNKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAY
                     ACATQKTSTSMLTRILRMAADEHQPPLVNGRRVKLKYAHPGGYNPPIIVIHGNQVEKL
                     ADSYKRYLSNYFRKSLKIIGSPIRILFQEGNNPFAGKKNKLTPSQLRKRKRLMKFIKK
                     SKK"
     gene            complement(13077..14384)
                     /locus_tag="PXC99_000290"
     CDS             complement(13077..14384)
                     /locus_tag="PXC99_000290"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HDL5416787.1"
                     /translation="MTILALGINHKTASVGLREKVAFVDDKRKLALEQIQTSGLAESV
                     VILSTCNRTELYFHQPNISPREESEENIQWREQCFRWFAQIHQLDESELRECLYFKQN
                     LEAANHLMKVASGLDSLILGEPQILGQVKQAYQYSEDFYQHQQKAMSTKLSRLFQRTF
                     ATAKRVRSETEIGSQAVSVAYAACGLARQIFDNFGKLRFLLVGAGETIELVARYLIQH
                     GAKNIMLANRTHIRAEMLAEKLNAPMQILSLSALQLGLNQADVVISSTGSPDTLISKE
                     MVEIAQKQRQFDPLLLIDIAVPRDIDEKAGDLEGVYAYSVDDLQNIIQRNMAQREEAA
                     KQAAEIVKEESKAFFEWLKQQQSSDLIKRYRQDAEQTRQELLEKALQAISQGQDSQKV
                     LSELSYKLTNQLLHAPTQALQAMAKSGNSTGLQSFSRALRLEE"
     gene            14638..16836
                     /gene="relA"
                     /locus_tag="PXC99_000291"
     CDS             14638..16836
                     /gene="relA"
                     /locus_tag="PXC99_000291"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP diphosphokinase"
                     /protein_id="HDL5416788.1"
                     /translation="MVAIRYSHQLEPNNFELSSWCASLNMSPVTFEQIHNAWSYAQEK
                     LDTDYSLMWYGIEMVEVLHGLNMDDDSLVAAMLFPLVKHNVIDLVQLKEDFSNDIKNL
                     VKGVLEMENIRQLSANNVSDLQIDNIRRMLLAMVDDFRCVVIKLAERIAYLRDSNHHS
                     EEDTVLAAKECSHVYAPLANRLGIGQLKWELEDYCFRILHPVSYTQIAKFELGERRVD
                     RERYIANFVADLTACLSPEIKNVQIYGRPKHIYSIWKKMQKKRLRFNQLFDIRAVRVI
                     VPTLEDCYTALGIIHTKYTHLPEHFDDYIANPKPNGYQSIHTVVLGEGEKTIEVQIRT
                     QQMHDDAELGVAAHWKYKEGATAGRSGYEEKIVWLRKLLEWQNDLADSGDMVAEMRSQ
                     IFDDRVYVFTPRGEVIDLPQKATPLDFAYAIHSEIGHRCIGAKVAGRIVPFTYHLQMG
                     DQVEIITQKEPNPSRDWLNPNTGFVNTGKARSKIIAWFKKLDREKNIPIGKEALEAEM
                     EKFGFTLKQIEEYALPRYNLKQFDDLYAGIGGGDIRLHQLMHFLQSKLIKPTAEQEDE
                     AVLKQVNKNTNQPKPSKGYVIVEGVGNLMHSIARCCQPIPGDEIVGYITQGRGISIHR
                     ADCEQLFELQSLNPERVVEADWGEGYTSGLSLTIRVIANDRNGLLRDVSAIMANEKVN
                     VLGVSSRTDVKRSLATIDMEIQLNNVEILNKLLARIAQLDDVIEAKRLSS"
     gene            16955..18151
                     /gene="ispC"
                     /locus_tag="PXC99_000292"
     CDS             16955..18151
                     /gene="ispC"
                     /locus_tag="PXC99_000292"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HDL5416789.1"
                     /translation="MKKLVILGSTGSIGKSTLSVVEHNPNPNQYEVFALVGGKNVELM
                     LEQCRQYQPTFAAMDDEKSAQALKTALATLGSKTEVLAGQAAICELAAHSEVDMVMAA
                     IVGAAGLLPTLSAVKAGKTVLLANKESLVTCGQIFIDEARKSGAKLLPVDSEHNAIFQ
                     SLPPEAQQKVGFCPLAELGVSKIILTGSGGPFRTKPLNEFDAITPAQAVAHPNWSMGK
                     KISVDSATMMNKGLEYIEARWLFNATAEEMDIIIHPQSIIHSMVRYIDGSVIAQMGNP
                     DMCTPIAHTMAYPNRINAGVPPLDFFKLKELTFIEPDFARYPNLKLAIEAFAEGQYAT
                     TAMNAANEIAVEAFLNEQIRFTDIVNVNRTVVENIAPIQVSEIADVLHIDKLARELAK
                     QAVLQL"
     gene            complement(18194..19576)
                     /gene="nhaC"
                     /locus_tag="PXC99_000293"
     CDS             complement(18194..19576)
                     /gene="nhaC"
                     /locus_tag="PXC99_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HDL5416790.1"
                     /translation="MNNYLLKLKPMTAVILSLLTVFILGFTMIGLGWVPQISILAVIV
                     MLLLFGLINKIPFKNMQEGMASGLMSSIGAVYLFFFIGLLVSALMMSGAIPTLMYYGL
                     SVISPELFYISAFALSSVVGIALGSSLTTTATIGVAFIGMASAFGANPAIVAGAVVSG
                     AFFGDKTSPLSDTTTIAASVVGIDMFAHIRNMLYTTIPAWILTALFLWFLTEPTDAQN
                     LANIENLKTNLQETGLIHGYSLLPFVTLILMAIKRVNSIYIIVTTVTLSLIITYIHSS
                     PTLEQLGNYFFTSYKPVEGVDLGEVASLVSRGGINSMFFTITIVLLALSLGGLLQILG
                     ILPALLNGISGFLTSTGRVTLVVASTAVGINVLIGEQYLSLLLSGNTFRSTYERLGLE
                     VKNLSRTIEDAGTVINPLVPWGVCGVFISSVLNVPVLDYLPYAFFCYICLILTLIFGF
                     TGVTISKKAN"
     gene            complement(19622..21208)
                     /locus_tag="PXC99_000294"
     CDS             complement(19622..21208)
                     /locus_tag="PXC99_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HDL5416791.1"
                     /translation="MIQITQTINIDLLIVGSGIAGLSAAVEAKEKGINTLLISKSTIG
                     SGASYFPLKATLGIQVTGDEADKIHFKEDIENIGKGKINPNVVQAYIEDSPQAIELLH
                     RIGFQPWKRNDNRPACFAKYPRPIYLIKDWRESALRAKQILQEQHIAFYENATLLHIV
                     TDNNQVQGAVFSLTTSGQISYIFCKTKHLILAAGGIAGLYKDNLYPADVIGSLHYVAQ
                     QAGATLVNLAFIQFIPAFVEPKYKVLFGEHTLKYVTQITDSKGNNLFPHLNAEQFAKM
                     VLERSHYAPFSLDFAGVEFDLVMMKHLLENPHEKGIYLKYSPKLYEDTEEFYTVYLNW
                     LKNEVGIDLVQDKIAIKPFAHSCNGGIQINQWGESAVKGLFAIGEISHCIEGANRMGG
                     NSVGGGLVFAKRAVSEIVRSLEQNDLQKNSEISPLAMAEKALNQLANSTANLELTASE
                     VLSTIREKMALYANVYRTRSNLKLLLEELNRLEQEFDPIYHAQYQGIEIYNALKTAQL
                     VVNQMLNEQSLGAHYLDEQN"
     gene            complement(21271..22077)
                     /locus_tag="PXC99_000295"
     CDS             complement(21271..22077)
                     /locus_tag="PXC99_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5416792.1"
                     /translation="MSMKFIKEQPIIELSNIVVQFASRDGTLFNPKKFTAVNDVSLAI
                     HAGETVGLVGQSGCGKSTLASVMIGLQKPTSGTVKFNGLEMKYGSAEARKYFGSQVSV
                     IFQDPATALNPRMRVLDILKDPMDIHNILQPQEREKRVYDLLSRVGLPRSAALVEPTR
                     LSGGQKQRVAIARALALNPKLIVADEPTSALDVSVRAQVLNLLADLKKELNLAMVFIS
                     HDLQTVHQVSDRIVVMNGGKIVEMGDASDVFERPTQEYTRTLIEAAPSLL"
     gene            complement(22092..24062)
                     /locus_tag="PXC99_000296"
     CDS             complement(22092..24062)
                     /locus_tag="PXC99_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/oligopeptide/nickel ABC transporter
                     permease/ATP-binding protein"
                     /protein_id="HDL5416793.1"
                     /translation="MFRQGLAARLASGGARFRALSTSSKIALLFIVFIALVAIFAPLV
                     APYDPLQTLRPVQAPSGDYLFGTDRLGRDIFSRMVWGARTSLFIGLGAVGVAILFGSI
                     LGATAATADKFGNEVIMRFMDILMAFPGIALAAVLLATFGNSVPVIIVTIAVVYTPQL
                     ARVVRANVVSQWEEDYVRAERVIGGSRTYILLKHVVRNTAAPVLVFATVMVADAIVFE
                     ASLSFLGAGVQPPFPSWGNILSEGRNLVLSGFWWATTFAGIMILLTVLALNILAEGLT
                     DALVNPKLKRSTQSKEDVAKPLATDVQEAMSETLALKRYLLKLHEKETTRTDRMQLNS
                     TAKPILQVKNLSIRFPNRYGETPLVDNISFTVHEGETMGLVGESGCGKSITAFSIMGL
                     LPKTAKITGEILFTDRSGKQHNLLESADLNALRGHEISMIYQDALSALNPSMRIKDQM
                     AQLISRGGKQSAETLLQWVKLDPEKTLNRYPHELSGGQRQRVLIAMALAREPKLLIAD
                     EPTTALDVTVQAEVIKLLNELREKLGFAMVFVSHDLALVAQIAHHITVMYAGQVVETA
                     PTTPLLANPTHEYTRGLLGSVLSTELRAERLYQIPGSVPSPFDFAKGDRFASRSLRPD
                     ANPEQHLKLVPTGDHPQHFWASHLEDPQSKEA"
     gene            complement(24064..25017)
                     /locus_tag="PXC99_000297"
     CDS             complement(24064..25017)
                     /locus_tag="PXC99_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5416794.1"
                     /translation="MEIILRLLWRRLMALPVMILGVTALVFIVLQFTPGDPATVALGE
                     SASEAAKEIYREQHGLNDPLLVQYFRFLGNLFVLDFGMTTPPEQPIVDMIAKAFPLTL
                     QLTFIGVFLAAIVSFTLGVTAALYRDTWIDQLIRLISVAAVATPSFWLGILLIQYFSL
                     KLDWLPSGGFIPFSEDPKGYVNSMVLPSLALAVPVCASLIRVVRTTMVEEMDKDYVRT
                     AIGNGVPYSTVIRHNVLRNALITPVTVLGLRVGYLLGGAVVIEQIFDLPGMGKLIFNG
                     IVNHDLNLVQGVVLTIAFTFVLVNIIVDILYLLINPKIRSL"
     gene            complement(25229..26812)
                     /locus_tag="PXC99_000298"
     CDS             complement(25229..26812)
                     /locus_tag="PXC99_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5416795.1"
                     /translation="MKKQFEHNESRRGFMKLIAGVGAGMAFSGTLGTFTPKAFAAPAA
                     GSTIEAGIAYPISTGFDPLTSSGASSMAANLHIFEGLVDLHPATRKPYLALAAAEPEK
                     IDDVTYRITLRDGAKFHNGNPVTTEDVVYSFERVLDPAKASLFAQFIPFIDTVKKVDD
                     KVVEFKLKYPFALFKERLTIVKIVPKAVVEAGQAAFDANPVGTGPYKFVSATKDDRIV
                     FEAFADYNGGYPAQVEKMTWFLLSDDAARVTAQESGRVQAIESVPYLDAERLKRKGTV
                     ESVQSFGLLFLMFNCEKAPFNNPKVRQALHYGLDTQKLIDVVFLGNAKAATSYVQDTH
                     PDYVKANSQYDFDKAKAEALLAEAGVTELKFELLATDHSWVKECAPLILESWNSLKGV
                     KVSLKHLQSGALYGTHVDKGAYEVVIAPGDPSVFGNDLDLLLSWWYRGDVWPKRRFRW
                     SETAEYAEVQKLLDEAAKNPAASKEAWAKAINIIAEQVPLYPIIHRKLPTAWNDKALT
                     GFQPLPTTGMSFIGVGRAK"
     gene            27034..28191
                     /gene="hemW"
                     /locus_tag="PXC99_000299"
     CDS             27034..28191
                     /gene="hemW"
                     /locus_tag="PXC99_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HDL5416796.1"
                     /translation="MNLILPPLSLYIHIPWCVQKCPYCDFNSHAQKGLIPEQEYIEHL
                     LADLSQDLTAYRVAIGDRKLYSIFIGGGTPSLFSAEGIAYLLIEVEKRIAFEPNIEIT
                     LEANPGTAEAERFLGYAQGGVTRISMGIQSFEPEKLLKLGRIHDANEAKQAIKFAQNS
                     AKSGLQSFNIDLMHGLPNQSVKQALADLETGISLNPPHLSWYQLTIEPNTMFYYRKPT
                     LPDDDELWDIFEQGHQLLTNAGYEQYETSAYAKKGYQCRHNLNYWRFGDYLAIGCGAH
                     GKISYPTGEIYRFSKIKHPKGYMRGEYRYSQDLIELDDRPFEFFMNRFRLLEATPKQE
                     FEWFTGLDREVVRPTIDWALNQNYISETATHWQITQHGKLFLNELLEGFLE"
     gene            28334..28816
                     /locus_tag="PXC99_000300"
     CDS             28334..28816
                     /locus_tag="PXC99_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL5416797.1"
                     /translation="MIDKQIRNSTAEFLIFTQQNGAENITVRYEDNEIWLTQKLIAQL
                     FDCSTDNVSLHLKNIFNSRELDPNSVTEDFSVTAADVKNYRTKHYNFDAVISIGYRVN
                     SVRATQFRQWATKVLRNFAQKGYVIDRQRMENGTFLNEDYFEQLLAEIREIWLSERRS
                     "
     gene            28830..28982
                     /locus_tag="PXC99_000301"
     CDS             28830..28982
                     /locus_tag="PXC99_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416798.1"
                     /translation="MRFDEAKLHAESEFEKYRIVQDRLFESDFDKVLKEMLRSENQYR
                     PSFSTT"
     gene            29069..29536
                     /gene="bcp"
                     /locus_tag="PXC99_000302"
     CDS             29069..29536
                     /gene="bcp"
                     /locus_tag="PXC99_000302"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HDL5416799.1"
                     /translation="MNILQAGDKAPKFTLQNQADEPVSLSQFAGKKVLVYFYPKALTP
                     GCTTQACGLRDSKSELDELNVVVLGISTDLPKKLAQFVEKKALNFTLLSDPDHQVAEA
                     FGVWGEKKFMGKTYDGIHRISFLIDEQGGVEQVFDKFKTGEHHQMIVDYLRGR"
     gene            29536..30084
                     /gene="gmhB"
                     /locus_tag="PXC99_000303"
     CDS             29536..30084
                     /gene="gmhB"
                     /locus_tag="PXC99_000303"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HDL5416800.1"
                     /translation="MGKKAIFLDRDGTINIDHGYVHQIDDFQFIDGVGKALKQLQDKG
                     YLLVLVTNQSGIARGYFSEAQFMQLTEWMDWSLDEDYGVVLDGIYYCPHHPEGKGEYR
                     KDCDCRKPKAGMFTQAIQDLNIDPSQSYMVGDKLEDILAAEAAGVKTKVLVRTDKAVT
                     EEGQAKADLVLDSLVDLVKYIK"
     gene            30089..30928
                     /gene="queF"
                     /locus_tag="PXC99_000304"
     CDS             30089..30928
                     /gene="queF"
                     /locus_tag="PXC99_000304"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HDL5416801.1"
                     /translation="MNYNDKSLSALKLGQKTEYKSEYDASLLQPVPRKLNRDSLGITQ
                     EQPFNRGADVWTCYELSWLNQNGLPQVAIADVAIDFKSENLIESKSFKLYLNSFNQTK
                     FSSIEEVGKTIQADLARCASGQVSVKIYQLSHYTQQPIVDFAGDCIDEQDIQIDSYAF
                     STHYLENIAEDELVEETLVSHLLKSNCLITSQPDWGSVQIRYKGKKLNREKLLRYLVS
                     FREHNEFHEQCVERIFCDLMQFAEPEKLTVYARYTRRGGLDINPFRSNFEEVPENLRM
                     ARQ"
     gene            31120..32253
                     /locus_tag="PXC99_000305"
     CDS             31120..32253
                     /locus_tag="PXC99_000305"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HDL5416802.1"
                     /translation="MLIFMMNEYSPNYYIGVMSGTSLDGVDIALLDFAKNPPKMTACD
                     FFPMPEELRADISALLKTGETNLQKLGEIDHRLGLLYAETINAFLAKNQLKAEDIQAI
                     GCHGQTVWHSPDSEYPFTTQIGDMNLVAEQTGITTIADFRRKDMAVGGQGAPLVPAFH
                     QAIFSDPNRLTVVLNIGGISNISVLNPNSPTVGYDVGAGNTLMDSWIEQHQGKRYDKN
                     GEWARTGKLNTELLATLLDESFFAKAPPKSTGRELFNLTWLAKKLENLTACQPQDVQR
                     TLAEFTAQSIANELLRFESSLPRLLLVCGGGSRNPLLMERISALLPEWEVTTTTEFGL
                     DIDYVEAAAFAWLAYQRIHNLPSNMPSVTGAKKAVSLGVIYPA"
     gene            complement(32250..33308)
                     /locus_tag="PXC99_000306"
     CDS             complement(32250..33308)
                     /locus_tag="PXC99_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5416803.1"
                     /translation="MAEILFRSCLCCNAKRIFYLLTFYKGFETSQIATAFSLLVFTSQ
                     AFSLFAGSWGDSFGRYPIMMLGCLLDALAYILLLTTKNYPLLLLATFFFGLGSTLFST
                     NARAFLLANIQDTGDSYQLKTKAQGKFLKVSSLSAMVAPLLTIPFIFYRKAEWLIWIS
                     CCIEIIMLFVMFKTAPKTHECANGQCERFKFGALKGILNEQFIFVHLLLFIPLGLGSA
                     FYIIFPYIFTNLLDKPELVSVSFFVNNLIAVLLQSDFSRKLNLTVHKLIYIAPILIIL
                     QIMPWFYALQWLSTITAFLYLVIFATITVYANTALSNMLVKLDNGKNQGLMFGSSKLI
                     LAITTLGVMNVLPYIFLI"
     gene            33391..33852
                     /locus_tag="PXC99_000307"
     CDS             33391..33852
                     /locus_tag="PXC99_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HDL5416804.1"
                     /translation="MRKIKLLHVILSLILGLSAAAIGSYPAIKEIGEERAKKHQDILD
                     LNRELYSAMVNRDFSALQTLLSDDFELYSSTGEVIDKQEWIKLIQKRVLEFDKVDLLS
                     TDFQGNQSSGLLRVNGEFFGIERDNVVVEMNIRTIVRNTERQIKCIVIKEV"
     gene            33865..34758
                     /gene="murQ"
                     /locus_tag="PXC99_000308"
     CDS             33865..34758
                     /gene="murQ"
                     /locus_tag="PXC99_000308"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HDL5416805.1"
                     /translation="MNALGQMITEQRNPNSMNIDRLSALDIVQVINQEDKQVAIAVEQ
                     CLPQIAQAVEKIVQAFEKGGRLVYVGAGTSGRLGVLDASECPPTYGVKPEMVVGLIAG
                     GERALRFPIEGAEDNREQGKVDLQAVNFSEKDVLVGIAASGRTPYVLGAMEYAKQLGA
                     TTVSIASNPNSAMAQIADIAIETVVGPEVLTGSSRMKSGTAQKLVLNMLTTASMILIG
                     KCYQNLMVDVQATNEKLKARAIRIVMQATECEREVAEDTLKLAENNAKLAIMMILGNL
                     DKQKAEDLLSQNQGRLQKALK"
     gene            complement(34842..35786)
                     /gene="prmB"
                     /locus_tag="PXC99_000309"
     CDS             complement(34842..35786)
                     /gene="prmB"
                     /locus_tag="PXC99_000309"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDL5416806.1"
                     /translation="MFKYNTELLDEISALPIVNDLVTIQDMMRWGYSYFNASDLYYGH
                     GYDNAWDEAQQLVLAGLYLPFDVPETLYSSRLTRVEKERIINLICERLGSRKPVAYLT
                     NSAWFCGGEYYVDERVIVPRSPIGELIKKGFKGIIKNEPHRILDMCTGSGCIAIACAE
                     RFPEAEVDAVDLSLDALDVAQINIERHQVSHRVFPICSDLFNNLPQDKYDLIVTNPPY
                     VDEEDLGDMPEEFHHEPALALGSGKDGLDLTKRILAQAADYLNDDGVLVCEVGNSMVH
                     LIEQFPSVPFNWLEFEHGGLGVFSLTKEELVKHRHLFA"
     gene            35879..36424
                     /gene="smrB"
                     /locus_tag="PXC99_000310"
     CDS             35879..36424
                     /gene="smrB"
                     /locus_tag="PXC99_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease SmrB"
                     /protein_id="HDL5416807.1"
                     /translation="MNDTLLDDEFALFREAAKGTKKLTQNTFVPKAEPRKKLQELREL
                     KEKADTEFYFSDEYEPLLKEENEKVKYLREDVDPYILKQLRRGDFQPELFLDLHGLTR
                     EKAKKELAALILACEREKVYCASVMTGFGTRTLKDQIPRWLVQHPKVMALHQAPKEWG
                     GDASILILVEQPENPEKMFGR"
     gene            36488..36973
                     /locus_tag="PXC99_000311"
     CDS             36488..36973
                     /locus_tag="PXC99_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/prolyl-tRNA synthetase associated
                     domain-containing protein"
                     /protein_id="HDL5416808.1"
                     /translation="MSEQTFHQLTALLDSHRARYRVVGHPSAGKSEEVAKIRGTEIGQ
                     GAKALVCKVKGNGVKQAVLAILPADYQADLTKIAEHLGGLRASLASPAEVAELTDCVF
                     GAIPPFSFHPDLLLVAEPSLFERYAELAFNAGTLERSIILNTEDYQKIVNPVLVQFAK
                     S"
     gene            complement(36975..37724)
                     /locus_tag="PXC99_000312"
     CDS             complement(36975..37724)
                     /locus_tag="PXC99_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HDL5416809.1"
                     /translation="MEKRFEINEQGLSIRCKLFYEKELQQIENVVIVLHGFGSSKDLK
                     SNTKFGERLSSKYKGYAALAFDFPCHGDDARKKLSVEESITYLQLVIDYAKTSLNAKN
                     LYAYGTSFGGYLTLKYLAEKGNPFRKIALRAPAVQIYHSLMNRLSEEERQKLAKGREI
                     LWGFDRQMKISQAFFDELTDITQNDYLDYAEQILILHGTEDEMVALSTSQQFADNNVI
                     ELLPIEGADHAFSNPKLMDIAIGKIVEFFAP"
     gene            37896..38759
                     /locus_tag="PXC99_000313"
     CDS             37896..38759
                     /locus_tag="PXC99_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA/RhaT family transporter"
                     /protein_id="HDL5416810.1"
                     /translation="MLQLILAILCSVTVGVLIKFARQKGIRIDQSIAVNYIVTTTMTF
                     LLLKPDYQGQSITDIIANNPTSYIFVILSITLPTIFLVQAKALEFAGIIRTDAAQRLS
                     LFLPILAAFTIFGEQVTQNKLIALLLAFVALGCLLWKGNQGMEKGGKIAIISLALVWV
                     GYGVNDILFKQIAKSGSAFPVTLSIAFIGAGCFMFIYLLLKRTQWHVPSVLTGLLLGV
                     LNFGNILFYIQAHQAMKDDPTLVFTGMNLGVICLGTFVGAFFFKEKIHKVNYLGVAIA
                     IVAIICLFYWR"
     gene            38883..39476
                     /locus_tag="PXC99_000314"
     CDS             38883..39476
                     /locus_tag="PXC99_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416811.1"
                     /translation="MKLKALSTLIASSMLYSQSFAVPPEKTAEEPQPFFNKTESGYDL
                     VFNDQNYRLIETELNGEKIQFRAFERIVYVNNPIEPDYQTINLYVPEAYYNNGEINGY
                     QADTAPIFLPNSVGGYMPAKAASYDKKRRDGSPGTILVALSKGYVVASVGARGRTLQK
                     EGKYTGKAPSAIIDSKSAAHKACRFESDHWHHSLCKI"
     gene            39831..40142
                     /locus_tag="PXC99_000315"
     CDS             39831..40142
                     /locus_tag="PXC99_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5416812.1"
                     /translation="MVIIMLSKTKSPTLFPKYQNALLQLGENIRLASKRRMFTQTLLA
                     QRTGLSRVTVRKIMNGDPTVAIGYYLMVLGVLGLEQDFTDVGKDDELGRKLQDIELLR
                     K"
     gene            40142..41383
                     /locus_tag="PXC99_000316"
     CDS             40142..41383
                     /locus_tag="PXC99_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HipA domain-containing protein"
                     /protein_id="HDL5416813.1"
                     /translation="MMNKRIYVFADWETFSQPELVGVLSSDVVRGKENFRFSYDNEWL
                     SSPYVQQIDPNLYLYPGEQYSTDTQNFHIFLDSCPDRWGRLLMKRREAALASQENRKP
                     KLLIESDYLLGVHDMNRMGALRFKTELNGPFLDNNTRLAAPPLSSLRELEFAAIQLES
                     SDNVDDPDYLKWLHMLISPGSSLGGARPKASVIDELNQLWIAKFPSRYDDYDIALWEY
                     LAYRLAIQAKIEMATCRIERFNQEHHTFLTQRFDRHCGKRRHFTSALTQLGYYDGDYE
                     ASYLEIAQFLTESGSNTRIDLAQLWRRIVFNIAISNTDDHLRNHGFIYAQEGWILSPA
                     YDLNPVPLSQGLHLNITDSDNRLDYQLAFDVADFFQLSKQQAVQIYDEVLKEINNWQN
                     VAKEIGIPRQEQEQMKFAFNV"
BASE COUNT        12657 a         8105 c         8978 g        11986 t
ORIGIN      
        1 tgaattaatg ggctggtaaa cggttgcgtg aagagaaaaa tgctattgac attgatttgg
       61 ataaggataa tatacacctc aactactgaa taacaatgca aacataaaca tacaacacaa
      121 catggaaaaa tttaccttac tccgattatc tctgttatcg tattttgtgc gaggataaag
      181 attgattgga aaaagtaaat ggactatcca cattcttgcc cgcaccttaa aatgcgggct
      241 ttttttatca aataaaaaca cctaaaaaga ggcttctatg agcaacaata acattattat
      301 ttttgatacg actttacgtg atggtgagca atcattaaaa gcaagtttaa ccgtaaaaga
      361 aaaattgcaa attgcccttg ctttagaacg tttaggggtt gatgtgatgg aagtcggttt
      421 tccagtttct tcagcgggcg attttgaatc agtacaaacc atcgctcgtc atatcaaaaa
      481 cagccgggtg gcggcgcttt cccgagcggt tgcaaaagac attgatgcag cttatgaagc
      541 cttaaaagta gcagaagcat tccgtatcca tacctttatt gccagctcgg cattacacgt
      601 tgaggctaaa ttaaaacgtt catttgatga tgtagtcgaa atggcggttg cagcggtaaa
      661 acgcgccaga aattatactg atgatgttga gttttcctgt gaagatgctg ggcgtactgg
      721 aattgataac atctgccgca ttgtagaagc tgccattaat gccggtgcaa ccacagtgaa
      781 tattccggat acagtcggtt tctgtttacc gaatgaatac ggcaatatta tccaccaagt
      841 gatgaaccgt gttccgaata tcgataaagc gattgtctct gttcactgcc ataacgattt
      901 aggtatggct accgccaact cattgacagc ggtgcaaaac ggagcgagac agattgagtg
      961 tactatcaac ggtattggcg aacgtgccgg taacaccgct cttgaagaag tggtaatggc
     1021 aattaaaacc cgccaagaat ttatgggggt tgatacccgc attaataccc aagaaattca
     1081 ccgtgtcagc caaatggtca gccagctttg caatatgccg attcagccga acaaagcgat
     1141 tgtcggtagc aatgcctttg ctcactcttc aggtattcac caagacggta tgctgaaaaa
     1201 taaaaatact tatgaaatta tgtcgccgga aaccatcggc ttgaaaaaag agaagctgaa
     1261 tttaactgcc cgttcaggta gagcagcggt gaaagggcat atggctgata tgggttatac
     1321 ggaaacggat tacgatttag ataaacttta tgaggccttc ttgcaacttg ctgataaaaa
     1381 agggcaagtg tttgattatg acttagaagc tcttgccttc attgatatgc agcaaggcga
     1441 tgaagaccgc ttaaaattag atgtaattac cacccaacta atcagcggtt taccggcttc
     1501 ggcttttgta caggtggaat tagacggcgt tcgtcaaagt gctacatctc aagggggaaa
     1561 tggtccagtt gaggcaactt acaatgccat tatgaacatt gtgggaatgg agctaaaaat
     1621 gtcgcactat aatctgactg cgaaaggcga aggagcagaa gcattagggc aagtggatat
     1681 tgtagtggaa tatgaaggtc gaaaattcca cggtgtgggt ttggcaaccg atattgtgga
     1741 atcttcagcc cgagctttaa ttcacgccat taatgcgatt taccgttcac aaaaagtggc
     1801 agatttaaaa gcgaagaaat aacttataga gcgaaagcat aacatagaca agcggtcgga
     1861 ttttttgaaa tttttgcaaa atttcgctaa aatccgaccg cttgcttagt ttattaagta
     1921 ggttttatct aggaatgtaa aaaattacac aatttttcaa attttttgaa cttttgtcat
     1981 aaagcacaca ctaacaaagt gtgcaatgga aaatgacata ttgatattta ggagagtccg
     2041 cagttgagcg aacagatcac cgaccaagaa ttagtcgaaa aagcacaaaa aggtgataaa
     2101 aaagcattta atttacttgt tgtacgttat caaaatagag tagccggttt gctgactcgt
     2161 tatgttgcaa gagatgatat tccggacatt gtgcaagaat cttttattaa agcctatcgt
     2221 tctttagagt ctttccgtgg cgaaagtgct ttttatacgt ggctttatcg cattgcagtg
     2281 aatactgcga aaaatcattt aacctcttta ggcagaagac cgccaaaaga agatattctt
     2341 gccgaagacg ctgaaagtta tgatgtaggc gcgcaacttc gtgaaagtga tacgccagag
     2401 aatttgatat tatccgagga attaaagaaa gtcgtgtttg atacgattga aaatttacct
     2461 gatgagctta aaaccgccat tcgtttaaga gaattggaag ggctaagtta cgaagaaatc
     2521 gcagaagtga tggaatgtcc ggttggtact gtacgttccc gtattttccg agcaagggaa
     2581 gcgattgatg ctaaaatcaa gccacttatg caatagatag aaagattatt ttagaagaga
     2641 tttaaatcat tggagtcaat tatgcaagaa cgcatcactc aacaaaatga acgcctttca
     2701 gcttatatgg atgggcaaaa tgttgataca gcatttgtag aaacattaac taacagccct
     2761 gaattacagc aaaaatgggc aagttatcac actattcgta gtgtgatgca aggtgatgag
     2821 atcattttag ggagagattt ctctgctaaa atggaagcat tactggaaaa tgaagaaatt
     2881 gaatctcaag caaatgtaga gaaacctaaa ggcttattgc tcaagctcaa gcgttgggga
     2941 actccaatta tgcaagccgg tattgcagct tcagtgtgct tagttgcggt attaggggtt
     3001 aattcaatga atgcgagtga tgaaatagct caaacgcaac aaccagtatt acaaacattg
     3061 ccatttagca attcagttga agcggtaagt tataatgcgc cagttcaaga tcaaccaaca
     3121 gaagaacagt tagagcttca acagcgtaag attaatgcgt tattagaaaa ccatgagtta
     3181 caacgccgta ctaataacgt taaaaattta accttatctg aggaagaaaa gcaaaaagca
     3241 caaacttctt ccaatacaga atcagagcca aatatacaaa aataataggt aaaataagtt
     3301 actgaaagcc acataattta tccataatta tgtggctttt tgtatgtaaa tgtagcgaaa
     3361 aaataagaaa taaccaacaa gtagcgaaat agtgaaaatt ttttgctaaa ataacctaag
     3421 ttaatttggc ttgagaataa atatgctttt taagataaaa aaatacttat tgttgttttg
     3481 ggttatttct gcctgctata catttgcttg ggcagaatca actattaaaa caccattagc
     3541 atatttaacg gctatgtcag aagcacataa aaaatccact tatgaattag tttatattct
     3601 tcaacaggga agtgatacag aatctttccg tttacgtcat gcttttaccc ataataaaga
     3661 atatgcccaa ttactgaatt tagatcacag ccgagaagaa attattttaa aaaataacaa
     3721 ggtcagctat ttggggtata attttcgtcc ttttagttta aatagttcac agattttaga
     3781 taacctccct aatgtacttt acacagatta tgcaaattta aaaggttatg cctttttaga
     3841 tgctggtaaa gatcgtattt ctgaccgaat tacaaaggta attcgtatga agccaaatga
     3901 tactttaaga tatgcctata tactatggat tgatgaagaa acacatttat tacttaaaag
     3961 ccaagtcttg aatatggata atttggtatt agaagaattc agagttttgc aactttatca
     4021 atctccagaa ttggatagga ttgcaaatgt aatagaatca ctaatgttac caacattaac
     4081 gacagtgaaa aaagaagaat ttcctaagtc tgatggttgg caggtgaagt ggttgccgac
     4141 agggtttagg ttaattcagc aacaaacagt cacaggtgcg acatatcaag tggaaagtga
     4201 gtatgtagat agcagagtat atagtgatgg tttatctaca ttaactattt atattatgcc
     4261 tagccaaggc gtgagtttta atgagtacgc ttggcaacaa ggtaaattaa cgattttaaa
     4321 tcaaacgatt aatgatagag atattgtgat tattggtgat gtgccgttgc aatcggctaa
     4381 gcaaattatg aacaatattg gttttaagga aggagctcag ccatgatgat cgaacaggct
     4441 acggtggtgg aatatcagaa tggtgtggct attgtacaat gttatgctaa aagtagctgt
     4501 ggtggctgtg tagctcagtc tgcttgtggc agcaaagcat tatcagcatt agcaggtgaa
     4561 aaaattgacc ctcgttttcg tattgaggta gatgaacccc taaaagtagg cgataaggtt
     4621 gaactagggt tagctgaaaa tatcttgctc aaaagcgtgt ttttaattta tggcattcct
     4681 ctgctggttc ttgtgatgac agcggtcgga ttttcgcaat tttttgcaaa tgagcttatt
     4741 gttttattta taatgttgct ttcaacaggt ataacattct gggctgtaag aaaattgatt
     4801 cataaacaca gcaaacaagc aaatttttca cctatctttt taggtaaggt tttaggagac
     4861 tataatggaa aaaatatggc taaataatta tccgccttat tcaccaaaaa cgattgaaac
     4921 agatcaatat gaatctttag tggaaatgtt tgaagcagcg atacaacgcc accctgatat
     4981 tccagcttat attaatatgg ggcaggtttt aacgttccgt aaattggaag aacgtagccg
     5041 ctcgtttgcc gcttatttgc aaaatgaatt acgcctgaaa aaaggtgatc gaatcgcatt
     5101 gatgatgccg aatttattgc aatatccgat cgctttattt ggcgcattac gtgccgggct
     5161 tgtggtggtg aatgtcaacc cgctttatac gccgcgtgaa ttagaacatc aattaaatga
     5221 cagtggtgcg aaagcgattg tgatagtctc gaacttcgcg gctaccttag aaaaaattgt
     5281 ctttaatact gagattaagc acgttatttt gacccgaatg ggcgaccaac tttcattcgg
     5341 caaacgcacc ttagtcaatt ttgtggtgaa atacatcaaa aaattagtgc cgaaatataa
     5401 attgccacat gcggtcagct tccgtgaagc cttaagcatt ggcaaacagc gtcaatatgt
     5461 aaaaccgaat attgtcagcc aagatctcgc ctttttacaa tacactggcg gtactacagg
     5521 tgtagcgaaa ggggcaatgc tgactcatca aaacttaatt gctaatatga tgcaggcaaa
     5581 atggattgtt gagccattgt tgggtaattc tgccaatatg attggattgg tacctttacc
     5641 gctgtatcac gtcttagcac tttcgatgaa ttgcttgctc tttatcgaat taggacttac
     5701 cggattatta attactaatc cgcgcgatat tccaggcttt attaaagaat taaaaaagta
     5761 caaagtttca gtgattactg gggtaaatac attgtttaat gcattactta atcacgaaag
     5821 ttttaaagag gttgattttt cacacctaaa attaagtgta ggtggcggtg cagcgatcca
     5881 atctagcgtg gcaaaacgct ggcacgattt aaccggcgta catattatcg aaggttatgg
     5941 aatgacagaa tgttctccgc tgattagtgc aacccgtggc gattcggtgg aatattccgg
     6001 ctctattggc gtgccagtgc caaatactga cattcgtatt gtggatgatg aaggcaaaga
     6061 agtaccactc ggcgaacggg gcgagctggt ggtgaaaggg ccgcaagtaa tgcaaggcta
     6121 ttggaaccgt cctgatgaaa cggcacaagt gctacaagat ggttggatgg caaccggtga
     6181 cattgtggta atgggggatg atctgaactt acgcattgtt gatcgtaaaa aagatatgat
     6241 tattgtctcc ggttttaatg tgtacccaac cgaaattgaa gaagtgattt cccaaaaccc
     6301 aaaagtgaat gaagtagtgg cgattggtgt gccgagtgag gcttccggcg aaagcattaa
     6361 aatttttgta accaaaaaag atgaaagttt aactcgagat gaattgagaa cctattgtcg
     6421 tcaattctta accggctaca aaattccaag agacatcgaa ttccgtgacg aattaccaaa
     6481 aagtaatgtc ggcaaaattc ttcgccgagt gttaagagac gaagaattag caaaggtgaa
     6541 taaggcttaa attacactaa ttaaggagct taaaatgaaa attgttgaag taaaacaccc
     6601 acttgtaaag cataaattgg gcttaatgcg tgaagcggaa atcagcacca aagatttccg
     6661 tgagctagcg aatgaaattg gtagtctgct tacttacgaa gcaaccaaag atctggaaat
     6721 ggaaagtgtg gagatcaatg gctggagcgg agagaaaatt gcggttgagc gaattaaagg
     6781 caaaaaagtg actgttgtgc cgattctgcg tgctggctta ggtatgatgg acggtgtgtt
     6841 agagcatatt ccaagtgcca gaattagtgt ggttgggatt tatcgtgacg aagaaacctt
     6901 aaagcccgtg ccgtatttct ccaaactagc caacgatgtt gatgagcgtt tagccattat
     6961 caccgaccca atgcttgcaa ccggtggctc aatggtagca accattgacc tcctgaaaaa
     7021 agcaggctgt aagcagatta aagtgctagt gttagttgcc gctccagagg ggattaaagt
     7081 attagaagcc gcccacccag atgttgaact ctacaccgcc tcaatcgata gtcacttaaa
     7141 cgaaaacggc tatatcattc caggcttagg cgatgcaggg gataaaattt tcggcaccaa
     7201 gtaacatcaa aactaagtaa cagcaaaaca agtaaagctg atttaaacaa gcggccattt
     7261 ttcactaaag atttgcaaat cttggtagaa aaatgaccgc ttgtaattta ttgattagca
     7321 atcttcatca accaattctt cggttgtatc aattgccggc gggttgtcgt gtagccagtt
     7381 agccaaacgc acataatcgg caatggtaag gttttccgct cgggcggtta aatcaacgcc
     7441 taaggcgtcc agttgctccg cactaaacag ggttgaaaga gcattgcgta aggttttacg
     7501 gcgttggtta aaggcttgag tcgtgacccg attgagccaa tacacatctt ttgccggata
     7561 aggcagttgg ttataaggca ctaaacgcac taccgcagaa tcgacttttg gtgccggttt
     7621 aaaggcggtt ggcggcactt ccagcaccgg aattacttgg caatagtatt gagccataat
     7681 ggttaaacgc ccgtatgctt tactgtttgg cgcggcacat aaacgtttca ccacctcttt
     7741 ttgcaacata aagtgcatat cttgaattaa gtcgtgaaag gtcagcaggt ggaatatcaa
     7801 gggcgtagaa atgttgtaag gtaagttacc aaacacacgc accgagtctt cgtctaagtt
     7861 gagttggtta aaatagtcac ggaaattaaa gcgtagggca tcttgctcaa taatggtgag
     7921 tttttggttt aaaaacgggt ggtggcgtaa acgctctgct aaatcacggt caatttcaac
     7981 caccgtgagt ttatctacca attcggcaac cggctcggtt aatgctccta aacccggacc
     8041 gatttctaat aaaaattgtc cgtttttcgg gttaatggct gaaactatgc tgtgaataat
     8101 gttcatatcg tgcaaaaagt tttgcccgaa acgcttacga gcggtatgac ctaaatgttt
     8161 tttggaattt gtagaactca ttgttatcct ttttgaaata agaaaagaac cccgcattat
     8221 gcgaggttct taaaaatttt aattattgac cgacatattg aatattggcg gtttttctaa
     8281 gcgcttttac ccaatcttta gaggcttctt cggcttgctt gttcaccagt tgctgataag
     8341 cacgttggtg gtaagcatct tcggttctgt ctccgttacg agtgtcggtg acttttaaaa
     8401 tatgccaacc aaattgcgat ttaaacggag cagaaatttg gtttggtttg atttttgatg
     8461 caacattcgc aaatgccgga tcgtaaattt ctaagaagtt aaaacctaaa tctccaccgt
     8521 ctgcccctga ggcataatca acagaatggg tttttgccgc ttcttcaaag ctgattttgc
     8581 ctgagttaat atcagtagtt aagctgctaa gttttgcttt ggcttgagca tcatttaaaa
     8641 tcgggttggt tttgagcaaa atatgactaa tgcgatgctc tttgccagaa acggttttca
     8701 atttgcctgc tgctttatct ttcgccatta actctttcgc cagagcttgc acttgctgtg
     8761 gtgcaacctg aatcgatttg ctaatgctga tatggcgaac ttgttccatt gccatttgtt
     8821 gagcaatatt acgtttgaat tgttcaagtg taataccttg ataatctaac gcatctaata
     8881 actgaccgta agtaatgccg ttttgaattg ctacattttc aaccgcttgg tttaccgcag
     8941 ctgggctgac tttaacgccg gcttctttca ttgcctgttg caccaacata tcatcaatca
     9001 cttgatcaat agccgcacgt tgagcagttt ctgtcgcctt tttcttgcca agcacacgtt
     9061 gaacctggct ttgcataata ggggtatcat tcactaacgc caccactctt tcttcaaatg
     9121 cgtgggcggt ttgggtaaga ctcattgttg caacggcaac agcaaataat gatttgacta
     9181 atttcatttt tataacaatc ctaatggagg taattaagca gtaacttttc cttagagata
     9241 agtttagcga aaaggttcac ttaatttaag cactttcttt attggcagca ggaactaaga
     9301 ccacttggtt aatcccatca tacgagagcg tttgcacctg aatttgctcg tttttagccg
     9361 ttggaatatt ttttccgaca taatcggctc ggataggcaa ttcccgatga cctctatcga
     9421 caaaaatcac cagttcaatt ctggcagctc tgccaaaatc taagagtgca tcaagtgccg
     9481 cccgaatggt tctgccggta aacagaacat catcaaccaa aatcactttt ttaccgttca
     9541 gatttagctg attatcggct cccataaata cgggatcttg ataaattaag tctaggtcat
     9601 cacggtagaa cgtaatatct aacgccatat aaggcaagcg tgtttgagct aaatcttcaa
     9661 tgcgtttttg gattaactcg gcaatttcag ctcctcgacg tttgatgccg acaatcacta
     9721 catcttgcaa atcaccgtgt ttttcaataa tttgatgtga aatacgagat attgtgcgct
     9781 gaaattgctc ggtatcaata atgatttttt ctctcgccat tcgcttatta ccattatagt
     9841 gcttgaattt tcttgatcac attagtggta gaacagccgt tttcaaagtt caatactcgc
     9901 acatcgccgc cgtttgccca tacttcttgg ctgccggcaa tctcttccgg cttgtaatca
     9961 ccacctttta ccaataaatc aggtaggatt tcactgatta aacgttgtgg tgtatcttca
    10021 tcaaaaggca caacccaatc tacagaggct aaaccagcta aaactgccat acgggcagct
    10081 aaatcattaa tcgggcgagc ttcgcctttt aggcgtttta ccgaagcatc ggtattgacg
    10141 gctacaatta atcggtcgcc taatttacgg gcgttttcca aataggaaac gtgaccgggg
    10201 tgaagaatat caaagcaacc gttcgtcatc acgatttttt cgccacgttt tttcgcttct
    10261 tccacaatcg cttttaattc ggcttcagaa accacgccaa aaccggtggc agtgcgttgg
    10321 tgaatcgcat tttccagctc aaccgggctg acggttgaag tccctaattt acctacgact
    10381 acaccggcgg cagcattggc taaatagcag gcttcttcat aggctctgcc atcggcaatc
    10441 gcagtggcta atacactgat tacggtatcg cctgcaccgg ttacatcata aacctctttg
    10501 gcttgggtcg gcagatgata aggctcgtgg ttcgggcgaa gtaaggtcat tcctttttcc
    10561 gaacgggtaa ctaatagtgc agataaatca tagtcggcaa tcagttttaa ccctttgctg
    10621 acaatctcat cctcatcttt acaatgccca accaccgctt caaattccga catatttggt
    10681 gtaagcaatg ttgccccacg atagcgttca aagtctgtgc ctttcgggtc gatcagcacc
    10741 ggcaccttag cattgcgggc aatttggatc atttgttgca ccgattccaa tgtgcctttg
    10801 ccgtaatccg agagaattaa tgctccgtaa gcggtaattt cttgcgaaag ttttgcaagt
    10861 agggcggtag aatctacatt gtgaaaaccc tcttcaaaat ccaaccgcaa taattgctga
    10921 tggcgggaaa gaatccgcaa ttttgtgatg gttgggtgcg aattaatcac cacacaatga
    10981 ttttggatct ggtgggaatt aagtaattta tctaaagcac gcccggcatc atcatcgcca
    11041 attaagccgt gtaatgttac cggtacgcca aggctggcga tgttcatcgc cacgtttgcc
    11101 gcaccgccgg cacgctcttc aatatcttgt actttcacca ccggcacagg ggcttcaggc
    11161 gaaattcgat tggttgcccc gaaccagtaa cggtctaaca ttacatcgcc aagcaccagc
    11221 actttagcat tattaaattt tggagagtat tgcatcatca tagttaatat tctctgttaa
    11281 atgatggcgc aagcgtccac gcttgtgcca ttattagttt tagcacaagc gtggacgctt
    11341 gcgctatcgt tagatattat ttcttacttt tcttaataaa cttcatcaaa cgtttacgtt
    11401 tgcgtaattg gcttggtgtc agtttgtttt tcttaccggc aaaaggatta ttgccttctt
    11461 ggaataaaat ccgaattggc gagccgataa tttttaaact tttacggaaa taattactta
    11521 aataacgttt gtaagaatcc gctaattttt caacctgatt gccgtgaatc acaataattg
    11581 gtgggttgta gccacccggg tgagcatatt ttaatttcac tcggcgacca ttaaccaatg
    11641 gtggttggtg ttcatcagca gccatacgca aaatgcgagt cagcattgag gtcgaggttt
    11701 tttgcgttgc acaagcgtag gcttctttta ctgaatcaaa caaattcccc acgcctgagc
    11761 cgtgcaatgc cgagataaaa tgcactctgg caaaatcaat aaaatctaaa cggcgatcta
    11821 actctgattt cacttgatct ttaatatctt gcgacaagcc gtcccatttg tttaccacaa
    11881 tcaccaatga acgaccagca tttagaataa agccgagtag tgataaatcc tgatcggaaa
    11941 taccttctcg ggcctcaata gttaatagca ccacgtttgc atcttgaatg gcttgcaagg
    12001 ttttaattac cgagaatttc tcaaccgcta aattcacttt gccacgttta cgcacaccgg
    12061 cggtatcaat gatggtatat tgctgaccgt cacgctccat tggaatataa atagaatcac
    12121 gggttgttcc tggcatatca taaactacca cacgctcttc gcctaaaatg cggttggtca
    12181 gtgttgattt accaacattc ggacgaccga caatcgcaat tttgatattt ttatcttcaa
    12241 tcgactcttc tgcttcttct gccaaggctt catctaataa tgccgcatct tcttcgttct
    12301 caaagtcgaa ttcggtatcc cattcgtctg tttcttcatt tgcaacattt ttagcatttt
    12361 cgcccgcttg ttcttggtta aattgctcgg catttagctg ttcgcctaaa ggagctaaca
    12421 cttgctcgat aagctgcgta accccacgcc cttgtgctgc agcaatttgt tctacttcgc
    12481 ctaagcctaa ttgatagaat tcggcacagt gagagtcggc atcaatacca tcggttttat
    12541 tggcaaccac caccgtggtt ttttcacgtt ggcgtaaata ttgagcaatg ccgacatcgg
    12601 caggtaataa tccggctcgg gcatcaacca agaaaagcac cacatcggct tcttcaatcg
    12661 ccaataaaga ttgttccgcc attttttctt ccacgccttc ctctgtacca tcaataccac
    12721 cggtgtcgat tacaatgaaa tcgtagccgg caatattagc gtgaccatat ttacggtctc
    12781 gggttaagcc ggggaaatct gctactaagg catctcgagt acgggttaaa cggttaaata
    12841 aagtcgattt gccgacatta ggtctgccca ctagggcaac aacaggagtc attttgtatc
    12901 ctctatatcc ggttatttgc aaaatagttg caaaaattgg cttattatag cggaaatttg
    12961 gggaagttga aattagaaga agatcgggaa cacggggagg gacgcacggc gtgcgtccgc
    13021 aagcggttaa aaatgttcaa ttttttgcaa atatgcctaa aagaatgtgc tgagcatcat
    13081 tcttctagcc gtaatgctct tgaaaaactt tgtaagccgg tggagttgcc actttttgcc
    13141 attgcttgta acgcttgggt tggggcgtgt agtaactggt tggtgagttt gtagcttagc
    13201 tcacttaata ctttttggct gtcttgccct tgactgattg cttgtagggc tttctccaac
    13261 aattcttggc gggtttgctc cgcatcttga cgatagcgtt tgattaaatc actagactgc
    13321 tgttgtttta accattcaaa aaatgctttg ctttcctctt tgacgatttc agcggcttgt
    13381 ttggcggctt cttcacgctg agccatattg cgttggataa tattttgtaa atcatcaaca
    13441 ctataagcgt aaacgccctc taagtcgccg gctttttcgt caatatcacg aggaacggca
    13501 atatcaatca gcaaaagtgg gtcaaattgg cgttgttttt gcgcaatttc caccatttct
    13561 ttactgatta gggtatcagg gctaccggtg gagctaataa ctacatcagc ttggtttaaa
    13621 ccgagttgca aagcacttaa cgacagaatt tgcattggag cgtttagttt ttccgccaac
    13681 atttccgccc gaatatgggt gcggtttgcc aacattatat ttttcgcccc gtgttgaatt
    13741 aaatagcggg cgactaattc aatggtttcg cctgccccta ccagcaaaaa gcgtaacttg
    13801 ccaaaattat cgaaaatttg acgggctaaa ccgcaagctg cataagcaac tgacaccgct
    13861 tggctgccga tttcggtttc ggaacgtact cgttttgcgg tggcaaaggt gcgttggaac
    13921 aagcgtgata gcttggtgga catcgctttt tgctgatgtt ggtagaaatc ttcgctatat
    13981 tgataggctt gtttaacctg ccctaaaatt tgtggttcgc ctaaaattag tgaatctaat
    14041 ccgcttgcca ctttcattaa gtggttagcg gcttctaaat tttgtttaaa atataaacat
    14101 tcacgcaact cgctttcatc aagttgatga atttgggcaa accagcggaa acattgttca
    14161 cgccattgga tattttcctc gctctcttca cggggagaaa tattaggctg gtggaagtag
    14221 agctcggtgc ggttgcaggt agagagaatg accacgcttt cagccaatcc gctcgtttgg
    14281 atttgttcaa gagccagttt acgtttgtca tctacaaacg ccactttctc tcttaaaccc
    14341 acagaggcgg ttttatggtt gattcctaaa gctaaaattg tcattgctac ccacaaaaat
    14401 aaagatcaaa ataaaaacgc aagtatttta atcaagagcg tgaagtcgtg caaatgattg
    14461 tgttgatagg tttgatttat cacaaggttg ctacctctta aggagtaaag aggataagat
    14521 aacttggatt aaattttcga ttaggggtaa attttttctg aatttccacg tataataaaa
    14581 ctccatttta agctgtacaa gcggtctaat ttccacaaaa atttacaagg aggccttatg
    14641 gtagcaattc gttattccca tcaacttgaa ccgaataatt ttgagttgtc gagttggtgt
    14701 gcaagcctga atatgtctcc tgtgactttt gagcagattc acaatgcgtg gagttatgca
    14761 caggaaaaac tggataccga ctatagtctg atgtggtatg gcattgagat ggttgaagta
    14821 ttgcacggct tgaatatgga cgatgacagc ttagttgccg caatgctttt tcctctggta
    14881 aaacacaatg tgatcgactt ggtgcaatta aaagaagatt tcagtaacga catcaaaaac
    14941 ttagttaaag gcgtactcga aatggagaat atccgccagc ttagtgccaa taatgtgtcg
    15001 gatctgcaaa tcgacaatat ccgtcgcatg ttgttggcga tggtggacga tttccgctgt
    15061 gtggtgatta aacttgccga acgaattgcc tacctgcgtg atagtaacca ccattccgaa
    15121 gaagataccg ttctcgccgc taaagaatgt tctcacgttt atgcaccgct tgccaatcga
    15181 ttgggtatcg ggcagctcaa atgggagctg gaagattact gtttccgcat tttacaccct
    15241 gtctcttaca ctcaaattgc taaatttgaa ttgggcgaac gccgtgtgga tcgtgagcgt
    15301 tatattgcaa attttgtagc agatctgacc gcttgtttaa gtcctgaaat caagaatgtg
    15361 cagatttatg gacgcccgaa acatatctac agcatttgga agaaaatgca gaaaaaacgg
    15421 ttgagattta atcagctttt cgatattcgg gctgtgcggg taatagtgcc aacgttagaa
    15481 gattgctaca cggcattagg cattattcac accaaatata cccatttgcc ggaacatttc
    15541 gatgattata ttgctaaccc aaaacctaac ggttatcagt ctattcatac agttgtatta
    15601 ggcgaaggtg aaaaaacgat tgaagtgcaa attcgtaccc agcaaatgca cgatgatgcg
    15661 gagctaggcg tagccgctca ctggaaatat aaagaggggg caaccgcagg gcgttcgggc
    15721 tacgaagaaa aaatcgtgtg gctacgcaaa ttgcttgagt ggcaaaacga tcttgccgat
    15781 tcaggcgata tggtggcaga aatgcgttcg caaatttttg atgatcgtgt ttatgtcttt
    15841 accccaagag gcgaggtgat cgatttaccg caaaaagcta caccacttga ttttgcttat
    15901 gcaattcata gtgaaatcgg gcatcgttgc attggagcaa aagtggcagg gcggattgtg
    15961 ccgtttactt atcatctgca aatgggcgat caggttgaaa ttatcaccca aaaagagccg
    16021 aacccaagcc gagattggct caatccgaat accggttttg tgaatacagg caaagctcgc
    16081 tcaaaaatta ttgcgtggtt taaaaaatta gaccgagaga aaaatattcc aatcggcaaa
    16141 gaggcccttg aagccgaaat ggaaaaattc ggttttacgc tcaagcaaat tgaagaatat
    16201 gctctgcctc gctataactt aaaacagttt gatgatctct atgccggtat tggcggtggc
    16261 gatattcgtc ttcatcagtt aatgcacttc ttgcaatcaa aattaattaa accgaccgcc
    16321 gaacaagaag acgaagcggt acttaaacag gtgaataaaa acaccaatca gccgaagcca
    16381 agcaaaggct atgtgattgt agagggcgta gggaacttaa tgcattccat tgcccgttgc
    16441 tgccagccga ttccgggtga tgaaatcgtg ggttacatca cacaaggcag agggatttcg
    16501 attcaccgtg cagattgtga gcaactgttt gaattacaaa gtctcaaccc agaacgagtt
    16561 gtggaggcgg attggggcga aggctatacc tctggtttaa gcttaaccat tcgagtgatt
    16621 gccaatgacc gcaacggctt actgcgagat gtcagtgcaa ttatggcaaa tgaaaaagta
    16681 aacgtgttag gcgtttccag ccgaaccgat gtgaaacgta gccttgccac cattgatatg
    16741 gaaattcagc ttaacaacgt tgaaattttg aataaattat tggctcgtat cgctcaatta
    16801 gatgatgtta tcgaagcaaa acggctttcg agttaatcta caagcggttg tttttgctaa
    16861 acaatttaca aacaacgaat gagtatccgc ataattacgg cgtaggggcg aaaaatcttt
    16921 cgcccttatc agtcattaga taaagagaaa caaaatgaaa aaattagtga ttttaggttc
    16981 aacaggttct atcggtaaaa gcactttatc ggtagttgag cataacccaa acccaaacca
    17041 atatgaggtg tttgcgttag ttggtggaaa gaatgttgaa ttaatgctgg agcaatgtcg
    17101 tcaatatcag ccgacttttg cggcaatgga tgatgaaaaa tccgcacaag cattaaaaac
    17161 ggcattggca actttggggt ctaaaactga agtgttagcc ggtcaagcag ctatttgtga
    17221 gcttgctgca cattccgaag tggatatggt aatggctgct attgtaggag cagcagggtt
    17281 attaccgaca ctttctgcgg tgaaagcggg taaaaccgta ttgttggcaa ataaagaatc
    17341 gctggtaacc tgtgggcaaa tttttattga tgaggctcgt aaatccggtg cgaagctctt
    17401 accggtagat agtgaacaca atgcgatttt ccaatcgctt ccaccggagg cacagcaaaa
    17461 agtcgggttt tgtccactcg ctgaactggg tgtcagtaaa attattttaa caggatcggg
    17521 tggaccgttc cgtactaagc cattaaatga atttgatgcg attacaccgg ctcaagcagt
    17581 tgctcacccc aattggtcta tgggtaagaa aatttcagtc gattcagcca caatgatgaa
    17641 caaaggcttg gagtatattg aagcccgctg gttgtttaat gcaacagccg aggaaatgga
    17701 tatcatcatt cacccacaat caattattca ttcgatggtg cgttatattg atggctcggt
    17761 gattgctcaa atgggcaacc cggatatgtg tacgccgatt gctcacacga tggcatatcc
    17821 aaaccgaatt aatgctggtg tgccaccatt agatttcttt aaattaaaag agctaacctt
    17881 tatcgagccg gattttgccc gttacccgaa cttaaaatta gcgattgagg cttttgcaga
    17941 aggacagtat gcgacaacag cgatgaatgc cgccaatgaa attgccgttg aggcgttttt
    18001 aaacgagcaa atccgcttta cggatattgt gaacgtgaat agaacggtgg tggaaaatat
    18061 tgctccaatt caagtcagtg aaattgctga tgtattgcat attgataaac tcgccagaga
    18121 gttagccaaa caagctgttc ttcagctcta atgaaaagaa aatgcctaca aatttgtagg
    18181 catttttcac atattagtta gcttttttac tgattgttac cccggtaaat ccaaaaatta
    18241 aggtaaggat taaacagata taacagaaga atgcgtatgg tagataatct aacaccggta
    18301 catttaatac gctactgata aacacaccgc acacgcccca agggactaat gggttgatta
    18361 ccgtgcctgc atcttcaatg gtgcgagata agtttttcac ttctaagcct aaacgttcat
    18421 aagttgagcg gaaagtatta cctgataaca ataagctcaa atattgctca ccgattaaga
    18481 cgttaattcc caccgcagtg ctggcaacta caagagtaac acgtcctgtg ctggttaaaa
    18541 agccgctaat gccgttaagt agtgccggta aaatgccgag gatttgtaaa agaccaccta
    18601 aacttaacgc aagcaataca atagtgatgg taaagaacat actattaatg ccaccacgag
    18661 agactaatga tgccacttcg cctaaatcta cgccttcaac aggtttatag ctggtaaaga
    18721 aataattccc tagctgttca agggttggcg aactgtggat ataggtaata attagcgaga
    18781 gtgttactgt agttacaata atataaattg aattaacacg cttaattgcc attaaaatta
    18841 acgtaacaaa aggtagcaaa gagtagccgt gtattaatcc tgtttcttgc aaattggttt
    18901 ttaggttctc tatatttgct aaattttgtg catcagtagg ttcggttaaa aaccaaagga
    18961 ataatgctgt taaaatccac gcagggatgg tggtataaag catattacgg atatgagcga
    19021 acatatcaat gcccactacg gaagcagcaa tggtagtagt gtctgaaagt ggagaggttt
    19081 tatcgccaaa aaacgcccct gaaaccaccg cacctgctac aatcgcaggg ttcgcaccga
    19141 aagcagaagc cataccgata aaagcaacac cgatggtggc ggttgtggtt aaactactgc
    19201 ctaacgcaat acctactaca gaacttaatg cgaatgcaga aatgtaaaat aattcaggtg
    19261 aaatcacact taagccataa tacattaagg ttggaatcgc accagacatc atcaaagctg
    19321 aaaccaataa tccaataaaa aagaataggt aaaccgcacc aatactggac atcagcccgc
    19381 ttgccatacc ctcttgcata tttttaaacg gaattttatt gattaagccg aaaagtagca
    19441 gcattacaat cacggctaga attgaaattt gaggcaccca gccaagccca atcattgtaa
    19501 aacctaagat aaagaccgtc aaaagcgaaa gtatgaccgc tgtcattggt tttaatttaa
    19561 gtaggtagtt attcatttat actcctaatt tattattttt aaataagttg gctattatag
    19621 actaattttg ttcatctaag tagtgcgcgc ctaaactctg ctcatttagc atttgattga
    19681 ccactaattg agcggttttt aacgcattgt aaatttcaat gccttgatat tgagcgtgat
    19741 agattgggtc aaattcttgt tccaaacggt ttaattcctc aagtagtagt ttgaggttgc
    19801 tccgagtgcg gtacacattg gcgtataacg ccattttctc tcgaatagta gaaagcactt
    19861 cactggcagt tagttctaga ttagcagttg aattagcaag ctgatttaat gctttttctg
    19921 ccattgcaag cggtgagatt tcgctgtttt tttgcaaatc attctgttct agcgaacgaa
    19981 caatttccga taccgcacgt ttggcaaaca ctaagccacc gccgactgag ttaccaccca
    20041 tacggtttgc cccttcaatg cagtgagaaa tctcaccaat cgcaaatagc ccttttactg
    20101 cactttcgcc ccattgatta atttgaatgc cgccgttaca gctatgagca aacggcttga
    20161 ttgcaatctt atcttgcact aaatcaatcc cgacttcatt tttgagccaa ttcaaataga
    20221 cggtataaaa ctcttccgtg tcttcataca gtttggggct gtatttaagg taaatgcctt
    20281 tttcgtgagg gttttcaagc aaatgtttca tcatcactaa atcgaactcc acgccggcaa
    20341 aatcaaggct gaaaggagca taatggctac gttccagcac catttttgca aattgctcgg
    20401 catttaagtg tggaaataga ttgttaccct tagaatcggt gatttgggtg acatatttca
    20461 atgtatgttc gccaaatagc accttgtatt ttggctcgac aaaggcagga atgaactgaa
    20521 taaaggcaag attaaccaag gttgccccgg cttgttgtgc cacataatga agtgaaccga
    20581 taacatcagc cgggtagaga ttatctttat acagcccagc aatcccgcct gcggctaaaa
    20641 taagatgctt ggttttgcaa aaaatatagg aaatttgacc gcttgtagtg agcgaaaata
    20701 ccgcaccttg cacttggtta ttgtctgtga cgatgtgtaa aagggtagca ttttcataga
    20761 aagcaatgtg ttgctcttgc aaaatctgtt tcgctcgtag ggcagattcc cgccaatctt
    20821 taattaaata aattgggcga gggtatttgg caaaacaagc cggacggttg tcgttacgct
    20881 tccaaggctg aaagccgata cggtggagta gttcaatcgc ttgtggtgaa tcttcgatat
    20941 aggcttgtac cacattaggg ttgattttgc ctttgccgat gttttcaata tcttctttaa
    21001 agtgaatttt atcggcttca tcgccggtta cttgaatgcc aagtgttgcc ttaagcggaa
    21061 agtagctcgc tcccgagcca atcgtagatt tgctaatcag taaggtatta atgccttttt
    21121 cttttgcctc aactgcagca gaaagcccag cgatgccaga gccgacaatt aataaatcaa
    21181 tgttaatggt ttgggtaatt tggatcataa ataaaaacac aagcggtaaa atttgcgaaa
    21241 aattttaccg cttgtaggca caaagcacaa ttataataaa gatggtgctg cttcaattaa
    21301 ggttcgggtg tactcttgcg ttgggcgttc aaatacgtct gaagcatcgc ccatttccac
    21361 aattttaccg ccgttcataa ccacaatgcg gtctgaaact tggtgaacgg tttgtaagtc
    21421 gtgagagata aataccatcg ctaaattgag ttcttttttc aagtctgcca gcaggttcag
    21481 tacttgagct cgaaccgata cgtcaagtgc agaggttggt tcatcagcca caatcagctt
    21541 cggatttaat gccaatgcac gagcaatcgc tacacgttgc ttttgcccac cagataatcg
    21601 ggttggctcg accaacgccg ctgaacgagg tagaccgact cgagagagca aatcataaac
    21661 ccgcttctca cgttcttgcg gttgtaagat attatgaata tccatcggat cttttaaaat
    21721 atccaacaca cgcatacgcg gatttagggc ggttgccggg tcttggaaaa ttactgacac
    21781 ttggctaccg aaatatttgc gagcttccgc actgccatat ttcatctcta agccgttaaa
    21841 ttttactgtg ccggaggttg gtttttgaag cccgatcatc acactggcta aagtagattt
    21901 gccacaacca gattgtccaa ccagaccgac tgtttcaccg gcgtgaattg ctaggctgac
    21961 atcatttacc gccgtgaatt ttttcgggtt aaataaggtg ccgtcacgag aagcaaattg
    22021 cacaacaata ttagacagtt caataattgg ctgttctttg ataaatttca tactcatcgt
    22081 attgctctcc tttatgcttc tttagattgt ggatcttcta agtgtgaagc ccagaagtgt
    22141 tgtgggtgat caccggttgg cactaatttc aagtgctgtt cagggtttgc atctggtctt
    22201 aatgaacgac tcgcaaaacg gtcacctttc gcaaaatcaa atggtgaagg cacactgccc
    22261 ggaatttggt ataggcgttc tgcacgcaat tcggtagaaa gtaccgagcc taataatcca
    22321 cgtgtgtatt cgtgtgttgg gtttgccaat aatggcgtag ttggtgcagt ttcaaccact
    22381 tgaccagcat acattaccgt gatgtggtga gcgatttgtg ccactaaagc taagtcgtgg
    22441 ctcacgaata ccattgcaaa tccaagtttc tcacgtaatt cgtttaataa tttgatcact
    22501 tcagcttgaa cggttacgtc taatgctgtt gttggttcat cagcaatcaa tagtttcggt
    22561 tcacgagcaa gtgccattgc aattaataca cgctgacgtt gtcctccaga taactcgtga
    22621 ggataacggt tgagcgtttt ttccgggtca agttttaccc attgcaataa tgtttctgct
    22681 gattgtttac caccacggct gattaattgt gccatttggt ctttaatacg cattgatggg
    22741 tttaacgcac ttaatgcatc ttggtaaatc atcgagattt cgtgaccacg aagggcattt
    22801 aaatcggctg attctaaaag attgtgttgt ttacctgaac ggtcggtaaa gaggatttca
    22861 ccagtgattt ttgcagtttt tggtaataaa cccataattg agaatgcggt gattgattta
    22921 ccacaaccag attcacccac taagcccatg gtttcgcctt cgtgaacagt aaagctgata
    22981 ttatcaacaa gcggagtttc accataacga tttgggaaac ggattgataa gtttttcact
    23041 tgtaaaatcg gtttggccgt tgagtttaat tgcatacggt cagtacgggt cgtttctttc
    23101 tcgtgtaatt tgagtaagta acgttttaac gcaagagttt cagacattgc ttcttgaacg
    23161 tctgttgcca atggttttgc gacatcttct ttactttgag ttgaacgttt tagttttgga
    23221 tttactaacg catcggttaa gccttcagca aggatattta acgcaagtac ggttaataaa
    23281 atcataatcc ctgcgaaagt tgtagcccac cagaagccac ttaatacaag gttacgacct
    23341 tcagataaga tatttcccca agatgggaat ggaggctgga cacctgcacc taagaatgaa
    23401 agtgatgctt caaatacgat ggcatcagca accatcactg ttgcgaatac taaaaccggt
    23461 gcagcagtat tacgcacaac gtgttttaat agaatataag tacggctacc accaattaca
    23521 cgctcggcac gcacataatc ttcttcccat tgagatacta cgttagcacg caccactcgg
    23581 gcaagttggg gagtgtaaac aaccgcaata gtcacgataa tcacaggtac agagttaccg
    23641 aaagtggcaa gtaatacagc agctaatgcg atacccggga atgccattaa gatatccata
    23701 aaacgcataa tcacttcgtt accgaattta tcggcggttg ccgcagttgc ccctaaaata
    23761 ctaccgaata gaatcgcaac gcctaccgca cctaaaccga taaagagaga tgttcttgct
    23821 ccccatacca tacgcgagaa aatatcacgt cctaaacggt ctgtaccgaa taaataatca
    23881 ccgcttggag cttgcactgg acgtagcgtt tgcagtgggt cataaggcgc tactaatggt
    23941 gcaaaaatag cgactaatgc gataaataca ataaagagta aggcgatttt tgagctggtt
    24001 gataatgctc taaatcttgc accgcctgaa gcaagtcgag cagctaatcc ttggcgaaac
    24061 atattataaa ctccgaattt ttggattaat gagcaagtaa agaatatcaa caatgatatt
    24121 caccaacacg aaagtaaatg cgatagttaa tactacacct tgcactaagt tcaagtcgtg
    24181 attgacgata ccgttgaaaa ttaatttacc cattcccggt aagtcgaaga tctgttcaat
    24241 cacaactgca ccacctaata aataaccaac ccgtaaacct aatactgtta ccggagtaat
    24301 taaggcatta cgaagcacgt tgtggcgaat caccgttgag taaggtacac cattaccgat
    24361 ggctgttcga acataatctt tatccatttc ttctaccatt gttgtacgca cgacacggat
    24421 caatgaggca catacaggaa cagctaaagc gagtgaaggg agaaccattg agtttacata
    24481 gccttttgga tcttcgctaa atggaataaa accgcctgaa ggcaaccaat ctaattttaa
    24541 ggagaagtat tgaatcaata aaatacccaa ccagaaagaa ggtgtggcaa cagcggcaac
    24601 cgagattaaa cggattaatt gatcaatcca agtatcacgg taaagtgctg ccgttacacc
    24661 taatgtgaaa gagacgatag cagctaagaa gaccccaata aaggtaagct gtaatgttaa
    24721 agggaatgct ttagcaatca tatcaacaat aggctgttct ggaggggttg tcataccgaa
    24781 atctaatacg aataaattcc ctaaaaagcg aaaatattgt acaagcaatg gatcatttaa
    24841 cccatgttgt tcacgataga tttctttagc ggcttcgctg gcgctttcac cgagagcaac
    24901 ggttgccgga tctccggggg tgaattgtaa aacaataaat accaaggcag ttacgcctaa
    24961 gatcattacc ggcagagcca ttaggcgacg ccataataat cggagtataa tttccatttt
    25021 cttctccttg agtgtagtta cactccaaaa ttaaatctaa gtttacctac aagctaatat
    25081 agtgatatgt aggattataa atgaaaatat agaaatggta agaattctga gtgatataag
    25141 acgaatatta catcattttg atttttattt atgcaagcgg taaatttttt gtaaaatatt
    25201 accgcttgca tttagctagc cgttacgact atttagcacg accaacaccg ataaatgaca
    25261 tacctgttgt tggtaatggt tggaaacctg ttaatgcctt atcattccac gcagttggca
    25321 atttacggtg aataattggg taaagaggca cttgttcagc gataatattg attgctttcg
    25381 cccaggcttc tttagaagca gcaggatttt tggccgcttc atcaagcagt ttttgtactt
    25441 ctgcatattc agctgtttca gaccagcgga aacgacgttt cggccataca tcaccacgat
    25501 accaccagct taataatagg tctaagtcat taccgaaaac tgatgggtcg ccaggtgcaa
    25561 tcacaacttc gtatgcacct ttatcaacgt gtgtgccata taatgcacct gattgtaagt
    25621 gtttgagtga aactttcacg ccttttaagc tgttccacga ttcaagaatt aatggcgcac
    25681 attctttcac ccaagagtga tcggttgcca acaattcaaa ttttaactct gtcacacccg
    25741 cttctgctaa taacgcttcg gctttcgctt tatcgaaatc atattgcgaa tttgctttca
    25801 cataatccgg gtgagtatct tgcacgtaag atgtagcagc ttttgcattg cctaagaaca
    25861 ccacatcaat taatttttgg gtatctaagc cataatgtaa cgcttggcga actttcgggt
    25921 tgttaaacgg tgctttttca cagttaaaca ttaagaacag taagccgaat gattgtactg
    25981 actcaacggt acctttacgt tttaagcgtt ctgcatctaa gtaaggcaca gactcaattg
    26041 cttgaacacg gccagattct tgagcggtta cacgagcggc atcatcagaa agtaagaacc
    26101 aagtcatttt ctcgacttgt gccgggtagc caccgttata atctgcaaat gcttcgaaaa
    26161 caatacgatc atctttagtt gcggatacaa atttatatgg gccagtcccc actggattag
    26221 catcaaatgc agcttgaccg gcttctacca ctgcttttgg tacgatttta acaatggtta
    26281 ggcgctcttt gaataacgca aatggatatt tcaatttgaa ttcaaccact ttgtcatcaa
    26341 cttttttcac agtgtcaata aatggaatga attgtgcgaa aagtgatgct ttagctgggt
    26401 ctaatacacg ttcaaatgag taaactacgt cttcagtggt aaccggatta ccattgtgga
    26461 atttagcccc gtcacgtaaa gtaattcgat aggttacatc atcaattttt tcaggctctg
    26521 ctgctgccaa tgctaaatat ggtttgcgag tggctggatg taagtccacg aggccttcaa
    26581 aaatatggag gtttgccgcc attgaggatg caccgcttga ggtaagcggg tcaaatccgg
    26641 ttgatatggg ataagctata ccggcctcaa tcgttgagcc ggcggcaggg gctgcaaatg
    26701 ctttaggtgt aaatgtacct aaagtgccac taaatgccat accggcaccg acacctgcaa
    26761 ttagtttcat aaaaccacgg cgggattcgt tgtgttcaaa ctgttttttc atcttaaagc
    26821 tcctttaagt ttttatgata ggggcggtat tatttgctga agtgaattta tcaaaaaatg
    26881 cacttttttg aattgaattt atcatatcat taatgtcaaa gtggtaaagc aagaattatt
    26941 gaatttgtga tctagctcac gaaaatcttt gcttttcact tcacgtgctt ttcgttatta
    27001 ttcgccaatt taatcataaa tgaaaaattg acagtgaacc tgattttacc gcctttaagc
    27061 ctttatatcc atatcccttg gtgcgtgcaa aaatgccctt attgcgattt taactcgcac
    27121 gctcaaaaag gattaattcc cgagcaagaa tatatcgaac atttacttgc agatttatcc
    27181 caagatttga ccgcttaccg agtggcaata ggtgatcgta aattatattc tatttttatt
    27241 ggcggcggca ccccgagctt attttcagcg gaagggatag cttatttatt aattgaagta
    27301 gaaaaacgga ttgcattcga gccaaatatc gaaattacac tggaagcgaa cccgggaacc
    27361 gcagaggcag agcgattttt aggttacgca caaggtggcg taacccgcat ttcaatggga
    27421 atccaaagtt ttgagccgga aaaattattg aaattaggac ggattcacga tgcaaatgaa
    27481 gcaaaacaag cgattaaatt tgcccaaaat tctgcaaaat cgggcttgca aagtttcaac
    27541 attgatttaa tgcacggctt accaaaccaa tcggttaaac aagccttggc ggatttagaa
    27601 acagggattt cactcaatcc accgcattta tcgtggtatc agctcacgat tgagccgaat
    27661 acgatgttct attatcgtaa gccaaccttg cctgatgatg acgagttatg ggatattttc
    27721 gagcaagggc atcaactttt aacgaatgcc ggctatgagc agtatgaaac ctcggcttat
    27781 gccaaaaaag gctaccaatg cagacacaat ttaaattatt ggcgatttgg ggattatttg
    27841 gcgattggtt gtggcgctca cggcaaaatt tcatatccga ccggggaaat ttatcgcttt
    27901 agcaaaatca aacacccgaa aggttatatg cgaggtgaat atcgctacag ccaagatttg
    27961 attgaattag acgaccgccc gtttgagttt tttatgaacc gctttagatt acttgaagcg
    28021 acaccaaaac aagaatttga atggtttaca gggttagaca gggaagttgt tcgcccgaca
    28081 atcgattggg cgttaaacca aaactatatt tccgaaaccg caacccattg gcaaattacc
    28141 caacacggta aattgttttt aaatgaatta ctggaaggat ttttggaata atttgcaaaa
    28201 aaacgactaa aaaaagaccg cattgtaatg ctaaattaca ggcgtttttt gtgatctgcg
    28261 tcgaaaaatc ctcatttttt actagacaaa aaaacagtat ttagtagcat agccttcaca
    28321 ataaggagag cttatgatcg ataaacaaat ccgtaatagt accgccgaat ttttgatttt
    28381 tactcaacaa aatggggcag aaaatattac cgttcgctat gaagataacg aaatttggct
    28441 tacgcaaaaa ttaattgctc agctttttga ttgctcaaca gataatgttt ctttgcattt
    28501 aaaaaacatt tttaatagta gggaactcga tccaaattca gttaccgagg atttctcggt
    28561 aactgccgca gatgtcaaaa attatcgtac caaacactac aactttgatg ccgttatttc
    28621 gataggctat agggtaaact cggtgcgggc gacacaattt cgccaatggg caactaaagt
    28681 attacggaat ttcgcccaaa aaggctatgt gattgaccgc caaagaatgg aaaatggtac
    28741 atttttaaat gaagattatt ttgagcagtt gctggcagaa attcgtgaaa tttggttatc
    28801 tgaacggcgt tcttgagggc aaaggcaaaa tgcgttttga tgaagcgaaa ttgcacgcag
    28861 aaagcgaatt tgagaaatac cgcattgttc aagacagatt atttgaaagc gattttgaca
    28921 aggtattgaa agaaatgttg cgttcggaaa atcaataccg tccatcattt tcaacaacat
    28981 aaaacaaccg cattttgcaa attttttgcc aagtttgacc gcttgccgtg tataatgcaa
    29041 gcggttattt tttatggaaa aattacaaat gaatatctta caagcaggcg ataaagcccc
    29101 taaatttacc cttcagaatc aggctgacga gccggtttct ctctctcaat ttgccggcaa
    29161 aaaagtactg gtttattttt atccgaaagc tcttacaccc ggttgcacta cgcaagcgtg
    29221 cggactgcgt gacagcaaat cagaacttga tgagctcaat gtggttgttc tcggaattag
    29281 caccgattta ccgaaaaaat tagctcaatt tgtagagaaa aaagcactta attttacctt
    29341 attatctgac ccggatcacc aagttgcaga agcctttggt gtatggggcg aaaagaaatt
    29401 tatgggaaaa acctatgacg gcattcatcg catcagtttt ttaattgatg agcagggggg
    29461 ggttgagcaa gtgtttgata aatttaaaac cggcgaacat caccaaatga tcgtggatta
    29521 tctacggggt cgctaatggg aaaaaaagcc atttttttag accgtgacgg cacaattaat
    29581 atcgatcacg gctatgtgca tcaaattgat gattttcaat ttattgacgg tgtcggcaag
    29641 gcgttaaaac agctacaaga caaaggttat ttattggtgc tggtaaccaa tcaatctggc
    29701 attgcccgag gctattttag cgaagcacaa tttatgcaac taaccgaatg gatggactgg
    29761 tcgctcgatg aagattatgg cgtggtacta gacggtattt actactgccc acatcacccc
    29821 gaaggcaaag gcgaataccg taaagattgt gattgccgta agcctaaagc aggtatgttt
    29881 actcaagcga ttcaagattt aaacatcgac ccaagccaat cttatatggt gggcgataaa
    29941 ttagaagata tccttgccgc agaagccgcc ggcgtgaaaa ccaaagtgct ggttcgcact
    30001 gacaaagcag tgacggaaga gggtcaggct aaagccgatt tggtgttaga tagtttagtt
    30061 gatttagtaa aatatattaa ataaagcaat gaattataac gataaatccc tttccgccct
    30121 gaaattaggg caaaaaaccg agtacaaaag cgaatatgat gcctcgcttt tgcaacctgt
    30181 tcctcgtaaa ttaaaccgtg atagtttagg cattacacaa gagcagcctt ttaaccgagg
    30241 ggctgatgtg tggacttgct atgagctatc ttggttgaac caaaatgggc taccgcaagt
    30301 agcgattgca gatgtcgcca ttgattttaa gagcgaaaac ttaattgaat cgaaaagttt
    30361 caagctctat ttgaacagtt ttaaccaaac caaatttagc tcaatagaag aagttgggaa
    30421 aacgattcaa gcggatctgg ctcgctgtgc aagcggtcag gtttcggtaa aaatttacca
    30481 attatcacac tacacgcaac agccgatagt tgattttgca ggcgattgca ttgatgagca
    30541 agatattcaa atcgacagtt atgcgttttc gactcattat ttagagaaca ttgcagaaga
    30601 tgagttggtg gaagaaacct tagtcagcca tttgctcaaa tctaactgct taattacgtc
    30661 acagcctgac tggggaagtg tgcaaattcg ctacaaaggc aaaaagctaa accgtgaaaa
    30721 actgttacgt tatttagtgt cgttccgtga gcataatgag ttccacgaac aatgtgtgga
    30781 acgcattttc tgtgatttaa tgcaatttgc cgagccggaa aaattaacag tttacgcacg
    30841 ctacaccaga cgaggcgggc tagacatcaa tccgtttaga tcgaattttg aggaagtgcc
    30901 ggaaaatcta agaatggcac gccaatgatt ttgttgtttt ttgttcccgt ctgaaccgcc
    30961 tgagcgtgtt tgaattggta ggtaaattta ctctgagcgg agcgaatgta aatttgccgt
    31021 taagccaatt caaactaagc gaggatagcg gtgaagctcg ggttgccttt cttttggtta
    31081 cttttctttg gcaaagcaaa gaaaagtaac aaatagcaga tgttgatttt tatgatgaat
    31141 gaatatagcc caaattacta tataggcgta atgtccggca cgagccttga tggggtggat
    31201 attgctttgc tggattttgc aaaaaatcca ccgaaaatga ccgcttgtga tttttttcca
    31261 atgccggagg aattacgggc ggatatttct gcgttactta aaaccggcga aaccaatctc
    31321 caaaaactgg gggaaattga tcaccgttta ggcttgcttt atgcagaaac gatcaatgcg
    31381 tttttagcga aaaatcagct aaaagcagaa gatattcaag ccataggttg tcacgggcag
    31441 acggtgtggc attcaccgga ttctgagtat cccttcacca cccaaattgg cgatatgaat
    31501 ttggtggcag agcaaaccgg tattaccact atcgctgatt ttcggcgtaa agatatggca
    31561 gtaggtgggc aaggggctcc gcttgtgccg gcatttcatc aagctatttt tagcgatcca
    31621 aatcgtctaa cagtggtgct gaatattggc ggcatcagca atatttcggt gttaaatccc
    31681 aattccccta cagttggtta tgatgtagga gccggaaata ctttgatgga tagttggatc
    31741 gaacaacatc aaggcaaaag atacgataaa aacggcgaat gggcgagaac gggcaagctc
    31801 aatactgaac tgttagcgac gttattagac gagtcgtttt ttgctaaagc cccgcctaaa
    31861 agcactgggc gggagctgtt taatttaacg tggcttgcaa aaaaattgga aaatttgacc
    31921 gcttgtcagc cacaagatgt gcaacgcacg ctggcagaat ttactgctca aagtattgcc
    31981 aatgagttat tacgctttga aagctctctg cctcgcttgc ttttagtttg tggtggtggg
    32041 tcaagaaatc cgttattaat ggaacggatt tctgctttac ttcccgagtg ggaggttaca
    32101 accactacag aatttggttt agatattgat tatgtagagg ctgccgcttt tgcttggtta
    32161 gcttaccagc gaatccataa tttacccagt aatatgccta gcgtgacagg agcaaaaaaa
    32221 gccgtgagtt tgggcgtgat ttaccctgct tagattaaga aaatgtaagg taatacattc
    32281 attactccga gagtggtaat agctaaaatt aatttagagc ttccaaacat taagccttgg
    32341 tttttaccat tgtctaattt cactagcata ttagatagtg ccgtattcgc atacacggta
    32401 atagtggcaa aaatcactaa atagagaaat gcagtgatgg ttgaaagcca ttggagtgca
    32461 taaaaccaag gcattatttg aagtataatc agtattggtg caatataaat aagtttatgt
    32521 actgtcagat ttaattttcg tgaaaaatca gattgcaata acactgcaat taaattattc
    32581 acaaagaatg agacagagac taattctggt ttatccagaa gattggtgaa tatatagggg
    32641 aatataatat aaaatgcact tcctagacca agcggaataa aaagtaataa atgtacaaaa
    32701 ataaattgtt catttagtat tccttttaat gcaccaaatt taaagcgttc gcattgccca
    32761 tttgcacatt catgtgtttt gggtgcggtt ttaaacataa cgaatagcat aataatttca
    32821 atgcagcagc taatccaaat aagccattct gctttacggt agaaaataaa tggaatagta
    32881 agtaatggtg ctaccatcgc tgacaggctt gataccttca gaaatttacc ttgagcctta
    32941 gttttgagtt ggtaactatc tccggtatct tgaatattgg ctaataagaa tgctctcgca
    33001 ttggtactaa ataaggtgct accgagcccg aagaaaaagg tagcaagtaa tagcagaggg
    33061 taattttttg ttgtcagtaa taaaatgtaa gctagggcat cgagcaaaca gccaagcatc
    33121 atgatagggt aacgtccaaa actatcaccc caagaacctg caaaaaggga aaatgcttgg
    33181 ctggtaaaga ccaacaaaga aaatgcagtt gcaatttggc tggtttcaaa gcctttgtag
    33241 aatgtaagta gataaaaaat acgctttgca ttgcagcata agcaagaccg gaaaagaatt
    33301 tccgccataa aatgatattt tggatattca tagataatat ttaatgagaa aaatgatttc
    33361 taatataact aaatttaata aggaagcaca atgagaaaaa tcaaattatt gcatgttatt
    33421 ttatctttaa tattagggct ttctgcggca gcgattggaa gttatccggc aataaaagag
    33481 attggcgagg agcgggcaaa aaaacatcaa gatatattag atttaaatag agaactttat
    33541 agtgcaatgg tgaaccgtga tttttcggct ttgcaaacat tactaagcga tgattttgag
    33601 ctttattcat caacaggtga agtgattgat aagcaagaat ggatcaaatt aatccaaaag
    33661 agagtattgg aatttgataa ggttgatttg ctatctaccg attttcaggg gaatcaatca
    33721 tctggattat taagagtaaa tggtgagttt tttgggatag agcgggataa tgtggtggta
    33781 gaaatgaata ttcgaaccat tgtgagaaat acagaacgcc aaattaaatg tattgtgatt
    33841 aaagaggttt aagtgtcgca actattgaat gccttagggc agatgattac cgaacaacgt
    33901 aatccgaatt cgatgaatat tgaccgcctt tcagcgttag atatagtcca agtcatcaac
    33961 caagaagaca aacaagtagc gattgcggtg gagcagtgcc tgcctcaaat tgcacaagcg
    34021 gtggaaaaaa ttgtgcaagc ctttgagaaa ggtggacgat tggtttatgt cggtgccggc
    34081 acgagcggaa gattaggggt gcttgatgct tcggaatgtc cgcccactta tggcgtaaaa
    34141 cctgaaatgg tggttggatt aattgccggt ggtgagcggg cattacgttt cccgattgaa
    34201 ggggcggaag ataatcgtga gcaaggcaaa gtagatttac aagcggtcaa ttttagcgaa
    34261 aaagatgtat tggtcgggat tgcagccagt gggcgaacgc cttatgtgtt aggggcgatg
    34321 gaatatgcta agcaacttgg tgcgaccacg gtgtcgattg ccagtaaccc aaattcggca
    34381 atggcacaaa ttgcggatat tgcgattgaa accgttgtcg ggccggaagt gctaaccggt
    34441 tccagccgta tgaaatccgg cacagctcaa aaattggtat tgaatatgct cactactgcg
    34501 tcgatgattt taatcggtaa atgctaccaa aatttaatgg tagatgtgca agcaactaat
    34561 gaaaaactca aagctagagc aattcggatt gtgatgcaag cgacagaatg tgaacgagaa
    34621 gtggctgaag atacactaaa attagccgaa aataacgcta aattggcaat tatgatgatt
    34681 ttaggtaact tagataagca gaaagccgaa gatttattaa gccaaaatca agggcgatta
    34741 caaaaagcgt taaaatagaa gtatgtctgc tctccccttg tgggagagag acagatcaat
    34801 cattcattca gaatgattga tcagagagag gggaggcaga tttaagcaaa taaatggcga
    34861 tgtttcacta gttcttcttt ggttaaactg aacaccccta agccaccgtg ttcaaattcc
    34921 agccagttaa acggcacact ggggaattgt tcgattaaat gcaccatact gttgccgact
    34981 tcgcagacta gcacgccatc atcatttaag taatcagcgg cttgagcaag aatccgcttg
    35041 gttaaatcta acccatcttt gcccgagcca agagctaatg ccggctcgtg atggaactct
    35101 tcgggcatat cgcctaagtc ttcttcatca acataaggcg gattagtcac aattaagtcg
    35161 tatttatctt gcggtaaatt gttaaacaga tcggaacaga tcgggaaaac tcggtgagac
    35221 acctgatgac gctcaatatt aatttgagca acgtctaagg catcaaggga aagatcaacc
    35281 gcatcgactt ctgcttccgg aaaacgctcg gcacaggcaa tcgcaataca accgctgccg
    35341 gtacacatat ctaaaattcg atgtggctcg tttttgataa tgcctttaaa cccttttttg
    35401 atcagctcac caatcggtga acgtggcacg atcacacgct catcgacata atattcaccg
    35461 ccacaaaacc aagccgagtt ggtaaggtat gctacaggtt tgcgagagcc taaacgctca
    35521 cagattaaat tgatgatacg ttctttctca actcgagtta agcgagagga ataaagtgtt
    35581 tccggtacat caaacggcaa ataaagccct gccaacacta attgttgtgc ctcgtcccac
    35641 gcattatcgt agccgtgccc gtaataaaga tcagaggcat taaaatagct atacccccaa
    35701 cgcatcatat cttgaatagt gactaaatca ttcacaatgg gcagggcgga aatttcatca
    35761 agaagttcgg tattatattt aaacattggc gtgccttttt tcgtattgtt aaaatggctg
    35821 tgttatacca cattttgctt tgtgttagaa tgtaaaaatg aataagaagg aaaagataat
    35881 gaacgatacg ttattagacg atgaatttgc attattcaga gaggcagcaa aaggcacgaa
    35941 aaagctgaca caaaatacct ttgtgccgaa agcggaacct cgcaagaaat tgcaagaatt
    36001 gcgagaatta aaagaaaaag ctgatacaga attttatttc tcggatgaat atgagccttt
    36061 gctgaaagaa gaaaatgaaa aagtgaaata tctgcgagaa gatgttgatc cttatattct
    36121 caaacagtta cggcgaggcg atttccaacc cgagctgttt ttagatctgc atggtttaac
    36181 tcgagaaaaa gcgaagaaag agttggcagc gttgatttta gcctgtgagc gggaaaaggt
    36241 atattgtgcc agtgtgatga ccggctttgg cactcgcacg ctcaaagatc aaattccacg
    36301 ctggttggtt cagcacccaa aagtaatggc gttgcaccag gccccgaaag agtggggcgg
    36361 agatgcctct attctaattt tggttgagca gcctgaaaat cctgaaaaaa tgtttgggcg
    36421 ttaaaattcg gctgaattgc caatttttta ttaaaaacga ccgcttgtgt atcattaagg
    36481 agaaatgatg tcagaacaaa ctttccacca acttacagca ttattagatt cgcatcgagc
    36541 tcgctatcga gtggtaggac atccttctgc cgggaaatcg gaagaagtgg caaaaattcg
    36601 aggaacagaa atcgggcaag gggcgaaagc cttagtttgc aaggtaaaag gcaatggggt
    36661 aaagcaagct gtgcttgcta tattacctgc tgattaccaa gcggatttaa caaaaattgc
    36721 agagcatctt ggtgggttaa gagcctcact tgccagcccg gctgaagtgg cagaattgac
    36781 cgattgtgta tttggggcaa ttccgccgtt tagctttcac cccgatttat tattggtggc
    36841 tgagccaagt ctgtttgagc gttatgctga attagccttt aatgccggta cgttggaacg
    36901 ttcgattatt ctgaataccg aggattacca aaagatagtt aatcctgtgt tggttcaatt
    36961 cgccaaaagc taggttatgg ggcgaaaaac tccacgattt tgccaatagc gatatccatt
    37021 aatttagggt tagaaaaagc gtgatctgcc ccttcaatcg ggagcagttc aatcacgtta
    37081 ttatcggcaa actgctgtga agtgcttaac gccaccattt catcttccgt gccgtgcaga
    37141 attaaaattt gctcggcata atccaaataa tcgttttggg taatatcggt tagctcatca
    37201 aaaaaggctt ggctgatttt catctggcga tcaaaccccc acaaaatttc tcgccctttg
    37261 gcaagttttt gccgttcctc ttctgacaag cggttcatta acgaatggta gatttgtact
    37321 gccggtgccc gcaatgcaat tttccgaaac ggattgcctt tttccgccag atatttcaag
    37381 gttaaatagc cgccaaaact agtgccgtag gcatacagat ttttagcatt caggctggtt
    37441 ttggcataat caatcaccag ttgcagataa gtaatggatt cctcaaccga gagtttttta
    37501 cgggcatcat caccgtggca agggaaatca aaggcaaggg cagcgtagcc tttatatttt
    37561 gagctaaggc gttccccaaa tttggtattc gatttcagat ctttagacga accaaagccg
    37621 tgcaacacaa tcactacatt ctcgatctgc tgcaattctt tttcataaaa cagtttacag
    37681 cgaatgctga gaccctgttc attaatctca aagcgttttt ccattttatg ttaagtattg
    37741 aaattgaaga tgacaaaatt ttagcactat ttgagtgcaa gcggtcggat ctctcgcaaa
    37801 atttgcaaat tttccggtaa atttaaccgc ttgtactagc caaaatttaa gcatatttat
    37861 agaatacagc cttcgttttt aaaaggagaa atgaaatgtt acaacttatt ttagcgattt
    37921 tatgtagcgt gactgtaggc gtgttgatta aattcgcccg ccaaaaaggg attcgtatcg
    37981 accaaagtat tgcggtgaac tatatcgtga ctaccacgat gacgttttta ttactaaaac
    38041 cggattacca agggcagtcg attaccgata ttattgctaa taacccgact tcctatattt
    38101 ttgtgatttt aagtatcaca ttgcctacta ttttcttggt gcaagcaaaa gccctagagt
    38161 ttgccggtat tatccgaacc gatgcggcac aacgtttatc gctgttcctg ccgattttgg
    38221 cggcattcac catttttggt gagcaggtta cgcaaaataa attaattgca cttctgttag
    38281 ctttcgtggc actcggttgc ttattatgga aaggcaatca gggaatggaa aaaggcggaa
    38341 aaattgcgat tatcagcctt gctctggttt gggtaggcta tggcgtgaac gatattttat
    38401 ttaaacagat tgccaaatca ggctctgctt tccctgtcac cctttcgatt gcctttatcg
    38461 gtgcaggctg ttttatgttt atctatttgc tacttaaacg cactcaatgg cacgttccaa
    38521 gtgtcttaac cggcttattg ctaggcgtgt tgaacttcgg caatattctg ttctatattc
    38581 aagctcacca agccatgaaa gatgacccaa ctttagtctt cactggaatg aacttagggg
    38641 taatttgctt aggcactttc gttggagcat tcttctttaa agagaaaatc cacaaagtga
    38701 actacttagg cgtggcgatt gcgattgtgg cgattatttg cttgttttat tggcggtaaa
    38761 tatactttcc aaaattaagg gcgaacataa tgttcgccct taatttttga gtaatatagt
    38821 gtaaaatatt caataaattc gaccgcttgt tgtaccgatt catatttcat aaaggacaaa
    38881 aaatgaagct aaaagcctta tctacactca ttgcctcttc aatgctatat agtcagagtt
    38941 ttgctgtacc gccggaaaaa acagctgaag agccacagcc ctttttcaat aaaaccgaat
    39001 ctgggtatga tttagtcttt aatgatcaaa actatcgttt aattgaaacg gaattaaatg
    39061 gcgagaaaat ccaattccgt gcctttgagc ggattgtgta tgtgaacaat ccgattgagc
    39121 cagattacca aacaattaat ctgtatgtgc cggaagctta ctacaataat ggcgaaatca
    39181 atggctacca agcggatacc gccccgatct tcttgccaaa ttcagtgggg ggctatatgc
    39241 cggcaaaagc ggcaagttat gataaaaaaa gacgtgacgg ttcaccaggt acgattttgg
    39301 tggcgttatc taaaggctat gtggtggcaa gtgtgggagc aagaggacgc acgctacaaa
    39361 aagagggaaa atacaccggc aaagcacctt ctgccattat tgattcaaaa tccgccgccc
    39421 ataaagcgtg tcggttcgag tccgaccact ggcaccactc actatgtaaa atttagtttt
    39481 acatagtttg ctgtaagcat ttgaattttg aatcgtttgt gtaggattgt tcaaatcata
    39541 ttcgcaaata cacagttact acgatgtatc cagccaatac atccattggg attttccgtc
    39601 cgaatttcag acgttctaga tcttacacat tctttcaagt ttgtaaagcc tgaaaatcat
    39661 tttttagatt gattttattt gaaaaaatct attttttctt ttaattcaaa tttagtcaaa
    39721 acttcaccag atattttttt ccgaaaaacc ctctctacct attttactgt ttacataact
    39781 gctcttgcaa ttgctataaa tggatattat aatttccaaa aaacataaaa atggtaataa
    39841 taatgctcag taaaacaaaa tcaccaactc tgtttcctaa gtaccaaaat gccttgcttc
    39901 aacttggaga aaatattagg ctagcctcaa aaaggagaat gtttactcaa acattattgg
    39961 ctcaaagaac tgggcttagc cgtgtaacag tgagaaaaat tatgaatggt gatccaactg
    40021 ttgcgattgg atactaccta atggttttag gtgttctcgg tctagaacaa gatttcactg
    40081 atgttggaaa ggatgatgag ttaggacgta aattgcaaga tattgaatta ttaaggaaat
    40141 aatgatgaat aaacgaattt atgtgtttgc agattgggaa actttttcac agcctgaatt
    40201 agttggggtg ctttcttctg atgtagtgag aggcaaagaa aatttccgtt ttagctacga
    40261 taacgagtgg ttaagttcac cctatgtaca gcagattgat cctaacttat acctttaccc
    40321 tggagagcaa tacagtacag atacacaaaa ttttcatatc tttttagatt cttgccctga
    40381 tagatggggt agattgttaa tgaaacgtcg ggaggcagct ctagctagtc aagagaatcg
    40441 taaacctaag ttactaatag aaagtgatta ccttttaggc gtacacgata tgaatagaat
    40501 gggggcttta cgttttaaaa ctgaattgaa tggtccattt ttggacaata atactcgtct
    40561 tgcagcacca ccactgtctt ccttaagaga attagaattt gcagcaatac aacttgaaag
    40621 cagtgataat gtggacgatc cggattattt aaaatggctt catatgttga tatcaccagg
    40681 gtcgtcacta ggcggagcta gaccaaaagc ttcggtaata gatgaactaa atcaactatg
    40741 gattgccaaa tttccaagtc ggtacgatga ttatgatatt gctctttggg aatatttagc
    40801 ttatcgactg gctattcaag ccaaaattga aatggctact tgtagaattg aacgctttaa
    40861 ccaagaacac catacttttt tgacacaaag atttgatcga cattgtggaa aacgtcgcca
    40921 ttttacgtca gcattaaccc agctgggtta ttatgacgga gactatgagg caagctacct
    40981 tgagattgct caatttttaa cagaaagtgg ttcaaatact cgaattgact tggctcaact
    41041 atggagaaga attgtattca atattgctat ttcgaatact gatgatcatt tgcgtaacca
    41101 cggatttatc tacgctcaag aggggtggat attatctccc gcatacgatt taaacccagt
    41161 accactatct caaggattac atttaaacat aacagacagc gataaccgat tggattatca
    41221 gctcgccttt gatgttgctg acttttttca attatctaag caacaagccg tacagattta
    41281 tgatgaagta ctgaaagaaa ttaataattg gcaaaatgtc gcaaaagaaa ttggtattcc
    41341 acgccaagag caagagcaga tgaaatttgc atttaatgta tagtaattga cttgtggaac
    41401 caatcatcgt agtctatgtt ctaaaaaagt agcgttacct taataacgca atgagttgtt
    41461 ggctcattgt caatctgata ttaatctagg atgtaaaggc ctagcggtgg caggcaccag
    41521 aaagacctga tactaatcta gggtataaag acctagcggt ggcagacacc agaacaaacc
    41581 aacatcttat aaaaccatta gtaacacttg acttttttct caaccatatc cgcaaggaag
    41641 cgtagcctta aaaacgcaaa tgtaggaaac taatctaggc atatataatg cctagcagat
    41701 ggcagacatc agaaaaacta acattt
//
LOCUS       DANLVT010000007        40509 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.007, whole genome shotgun sequence.
ACCESSION   DANLVT010000007 DANLVT010000000
VERSION     DANLVT010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 40509)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40509)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40509
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.007"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..565
                     /locus_tag="PXC99_000317"
     CDS             <1..565
                     /locus_tag="PXC99_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LacI family transcriptional regulator"
                     /protein_id="HDL5416814.1"
                     /translation="EVKDQDKFIFVYRYLKNAKHFIGFDYLPVIGDLIKHMKAHHLEN
                     IAFIKDNNCDWGGTVCDYLASYSQKNNIKILFFTQKESIHKLSFELAQSIHRFDGIIV
                     PSFDSAKILYSSFCLSNKIPPKIYTCYKNSFNNDDRFFQYRLDYDFISNQILSILRED
                     NAIIKEHHFWFPKIIESSNNTLPHNLK"
     gene            complement(832..2502)
                     /gene="glnS"
                     /locus_tag="PXC99_000318"
     CDS             complement(832..2502)
                     /gene="glnS"
                     /locus_tag="PXC99_000318"
                     /EC_number="6.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HDL5416815.1"
                     /translation="MSEEILTAETGTRANFITHIIDEDLASGKHNNVYTRFPPEPNGY
                     LHIGHAKSICLNFGIAQDYNGLCNLRFDDTNPVKEDVEYVDSIKQDVEWLGFKWEGEP
                     RYASDYFDQLYGYAIELINKGLAYVDELSPDEMREYRGTLTEPGKNSPYRDRSVEENL
                     ALFEKMKNGEFAEGKACLRAKIDMASPFIVMRDPVLYRVKFAHHHQTGDKWCIYPMYD
                     FTHCISDAIERITHSLCTLEFQDNRRLYDWVLDNISIERPLPHQYEFSRLNLEGTLTS
                     KRKLLKLVTDGIVDGWNDPRMPTISGLRRRGYTPASLREFCRRIGVTKQDNVVEYSAL
                     EACIREDLNENAPRAMAVINPVRVVIENFGEKEILKAPNHPNRPELGERDLPFTREIY
                     IDEADFREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDASGRISTIFCTYDPDTLGK
                     NPADGRKVKGVIHWVSAEDNKPAEFRIYDRLFTVPNPGAEEDINAVLNPESLVVKHGF
                     VESSLAHAKPEQDYQFEREGYYCLDSKDGSADNLVFNLTVSLKESVAF"
     gene            complement(2663..3106)
                     /locus_tag="PXC99_000319"
     CDS             complement(2663..3106)
                     /locus_tag="PXC99_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HDL5416816.1"
                     /translation="MNLQQIQDRLALKDLVDTFSNLADEKKVAEQMPLFTQDAVVNTY
                     IGGKLVFEMHGVAEIEQVFTTFLTPFHSVYHLNGQHTVPFIDENNATAINYCAVKLVE
                     TKEGKEILHDHSVRYADTYVKQEGKWRIAKRIANFMISESREIRQ"
     gene            complement(3157..3732)
                     /locus_tag="PXC99_000320"
     CDS             complement(3157..3732)
                     /locus_tag="PXC99_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HDL5416817.1"
                     /translation="MKQILILGASGSLANVVIPELLKDNNVQLTLFARRPQSVAKFET
                     ERVKIVQGDVLDFHALTQAMQGVDAVYAGLAGDLKAMAGNVVNAMNEAQVKRLVWISS
                     MGIYGETGEDHGAILEPYRQSAAVIEASELDYTVVRPGWFTNGSEVQYQLTHKGEPFK
                     GHSVSRKSIADFVARILRENSEIRESVGIAA"
     gene            3839..4729
                     /locus_tag="PXC99_000321"
     CDS             3839..4729
                     /locus_tag="PXC99_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5416818.1"
                     /translation="MKENLNDLRAFLLVAQTSSFTKAAAQMGVSQSALSHSIRGIEER
                     LQIKLFHRTTRSISTTEAGERLYQRLLPLFDEIDQEVNGLSEFRNALKGGLRINGNEH
                     VFRDVLADKFAEFVKRYPEVALELVAEDRFVDIVAERFDAGIRLGADVAKDMIALRIS
                     PDVKMTAAASPNYLAQHGTPKTPFDLTEHHCLKHRLATLGGILAWEFRDPITKKIVKF
                     QPQGNLTANNGFLLQHYAKQGLGILWSPQDSIQTELDNGSLVPILTDWAMQYEGYHLY
                     YPNRRQNSPLLKALIDVLRG"
     gene            complement(4796..5362)
                     /gene="efp"
                     /locus_tag="PXC99_000322"
     CDS             complement(4796..5362)
                     /gene="efp"
                     /locus_tag="PXC99_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HDL5416819.1"
                     /translation="MASYSTNDFKKGLKFIQDGEPCVIVENEFVKPGKGQAFTRTKIR
                     KLISGKVLEINFKSGTSVEAADVVDSNYNYSYSDGDFWYFMHPETFEQISVDEKALGD
                     NVKWLVDNAECIVTLWNGSAIAVTPPNFVELEIVETDPGLKGDTAGTGGKPATLSTGA
                     VVNVPLFVQIGEVIRVDTRSGEYVSRVK"
     gene            5529..6098
                     /locus_tag="PXC99_000323"
     CDS             5529..6098
                     /locus_tag="PXC99_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416820.1"
                     /translation="MKKLITLSAILAVSVATVAEAKRGGGSFRSVSPSKAVATKPVAS
                     QKSTTNQQTQQKDATFANTPNSATAQPQVRQGSTMANVAMGAAAGYILGDMMSSNAHA
                     NQPSQPADANAQAVNSAQNVANGAVPAIAEFKSIGGQIDPFLVEKTDGYRRYCISGVQ
                     YLVAAQGVQTSPTVMVNPNGTPLQCNLIP"
     gene            6152..7144
                     /gene="epmB"
                     /locus_tag="PXC99_000324"
     CDS             6152..7144
                     /gene="epmB"
                     /locus_tag="PXC99_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P beta-lysylation protein EpmB"
                     /protein_id="HDL5416821.1"
                     /translation="MQPIQIKPLWLTELAQAFNNPIDLLQFLELNPNDFEGDIAARKL
                     FALRVPRMFAEKMEKGNPNDPLFLQAMSLQAEFIEAEGFVVDPLEEQQSPAPNILHKY
                     HNRLLFMLKNSCAINCRYCFRRHFPYEEVKSGKAVWQQGLTYIAEHPELEEVILSGGD
                     PLMAKDQDLDWILTQLEQISHIKTLRIHSRLPVVIPNRITTELCERLSKSRLNVVLVT
                     HINHANEIDAVFANKMAQLKKAGVVLLNQSVMLKGVNDNAQTLKRLSDKLFEYGILPY
                     YLHLFDKVAGASHFYIEDEQAGEIYRELQRITSGYLVPKLAREIAKEPNKILKG"
     gene            complement(7244..8647)
                     /gene="asnS"
                     /locus_tag="PXC99_000325"
     CDS             complement(7244..8647)
                     /gene="asnS"
                     /locus_tag="PXC99_000325"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012054399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HDL5416822.1"
                     /translation="MSKFPTVSEILSGKIAVGEEATVRGWVRTRRDSKAGLSFLSVYD
                     GSCFDPIQAIINNDLPNYNAEVLHLTAGCSVVVTGKVVESPAEGQAVELQASKVEVLG
                     WVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHCLAQAIHRFFHEQGFYW
                     VATPVITASDTEGAGEMFRVSTLDLENLPRGENGKVDFNQDFFGKESFLTVSGQLNAE
                     TYACALSKVYTFGPTFRAENSNTTRHLAEFWMMEPEVAFADLNDNAKLAEDMLKYVFK
                     AVLAERKDDMEFFVKHVDKEAISRLENFINSPFAQVDYTDAIEILLKSGKEFEFPVSW
                     GIDLSSEHERFLAEEHFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEII
                     GGSQREERLEVLDQRMNEMGLNPEDYWWYRDLRKYGTVPHSGFGLGFERLIVYVTGLQ
                     NIRDVIPFPRAPRNANF"
     gene            9048..10595
                     /gene="sbcB"
                     /locus_tag="PXC99_000326"
     CDS             9048..10595
                     /gene="sbcB"
                     /locus_tag="PXC99_000326"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease I"
                     /protein_id="HDL5416823.1"
                     /translation="MSDKFSFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVM
                     FFCKQTPDYLPSPEAVMVTGITPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIR
                     YDDEMTRYTFFRNFYDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSF
                     KLENLTKANGIAHENAHDAMSDVYATIAMAKLIKQKQPKLFDFFFNLRSKKEVEKLID
                     TGEMTPLVHVSGMLGNYRGNTAWVVPLAWHSTNQNAVIVCDLSGDMNGLLTENAEVLR
                     QRLYTKRDELAENELPVPLKLVHINKCPILAPAKTLLPENAERLGIDRALCLENLKTL
                     KAQKSLIREKVIEIFNEERTFEPSTNVETTLYDGFFSPADKNNMAILRTLPPEDLANH
                     GLKFEDPRVEALLFHYRARHYPQTLSRAEQIKWQKHCNQQIEAKAAQFAQSIDDLFQQ
                     HHDNPEKVKLLENLTAYAEQISQQQAVIYRQNVAKDEKLLSELNRVAEQPLDKTEKLK
                     MLKELIK"
     gene            10592..11191
                     /locus_tag="PXC99_000327"
     CDS             10592..11191
                     /locus_tag="PXC99_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA glycosylase"
                     /protein_id="HDL5416824.1"
                     /translation="MTMDNLPLEQHPFDPILPEQATVVMVGTFPPTSEKRCMEFHYPN
                     FQNDMWRIMGNIFYADPNYFRVGEEKRFDPIRIEAFLREKGVALCSSAKTAIRLKGNA
                     SDKDLKIVDPIDMDELLLKLPKLKWLFTTGGLATDTLLGLLPEKHKAPKTNEWVVYPY
                     SATRELYLYRLPSTSRAYPLSLANKTEAYRQFFRTAGLI"
     gene            11203..12021
                     /locus_tag="PXC99_000328"
     CDS             11203..12021
                     /locus_tag="PXC99_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HDL5416825.1"
                     /translation="MKYDLHAHSTASDGVLSPTELVQRAVEQGVTMLALTDHDTISGI
                     QEAKNFAQNQPLELISGVEISILWQEKSIHLAALNIDENNEELVKFLDNQAQLREERA
                     VEIGEKLAKVGIANAYEGAKALATGEVTRAHYGRFLYEQGYVRNIEHAFKRYLGMGKP
                     AYVKPRWSSLEDAVNVTHTSGGVISIAHPLRYKMTARWIRRLIADFKQAGGDGIEVSG
                     CGQTPDQRQLLARWAKEFDLYGSVGSDFHYPTGWIELGKSLELPQECKPIWTLF"
     gene            complement(12057..12676)
                     /locus_tag="PXC99_000329"
                     /pseudo
     CDS             complement(12057..12676)
                     /locus_tag="PXC99_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596976.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Fe2+/Pb2+ permease"
     gene            complement(12687..13883)
                     /gene="efeB"
                     /locus_tag="PXC99_000330"
     CDS             complement(12687..13883)
                     /gene="efeB"
                     /locus_tag="PXC99_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deferrochelatase/peroxidase EfeB"
                     /protein_id="HDL5416826.1"
                     /translation="MMAETTSRRDFLKHTALVGAGLLSAPAFALESRQISEKSQNQYD
                     FYGKHQAGIVSPAQKHIYFLVLDLDTTDIAKVKTLFQNWTEYSRNLTLGKNVKPYSAN
                     AYVPPADTGEADSLSAQNLTLTFGVSANFFTKLGIEKHKPKELNDLPHFPRDQLQAEY
                     TGGDICIQACADDPQVAFHAVRNLVRVARGEIKMKWSQMGFNSFANQDTPRNLFGFKD
                     GTANAESLKDQENTVWVQQEGWLKGGSYLAVRRVKMFLETWDRTHLQSQEETFGRHRD
                     SGAGIGHQHEFDKLDLAKKDEKGNAVIPEVSHAHLANKTGLKILRRSFSYSSGIDDKG
                     QFDSGLLFVSFQQSPEQFIKIQNALGNVDKMNEYITHIGSGLFACFAGVKDENDYLGK
                     ALFDLI"
     gene            complement(13894..14739)
                     /locus_tag="PXC99_000331"
     CDS             complement(13894..14739)
                     /locus_tag="PXC99_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005823485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EfeM/EfeO family lipoprotein"
                     /protein_id="HDL5416827.1"
                     /translation="MFLLKGNFYAFNQTCFCTFALSGFFVATQAAALDLTKETEAYKQ
                     FVVEQIDQLVTDTEKFVGYLNKGDVQKAKKIYPLARMYFERSEPIAESFGDLDPRIDA
                     RLADLAEEGKTEKDWSGFHKIEKVLWQKNTTKGTKATAEQLLKDVKELRAKIPTAEVT
                     PEPMITGAVDLLNEVSTTKVTGEEEIFSKTDLYDFKANIEGAEKIYEIFKTQLEQIDA
                     KLSTEIGSRFAAVNALLAKHNKSKTGYDYVPYNKLSKADIKALAEAVNQLGEPLAQLG
                     VLLNK"
     gene            14902..15138
                     /locus_tag="PXC99_000332"
     CDS             14902..15138
                     /locus_tag="PXC99_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system ParD family
                     antitoxin"
                     /protein_id="HDL5416828.1"
                     /translation="MSRTTSVTLAEPLSQFVNQMVESGRYGSTNEVISAALKILEAQE
                     QQLIQLRALIDEGLESGVSEETVQSIISKAKRNV"
     gene            15377..17395
                     /gene="uvrB"
                     /locus_tag="PXC99_000333"
     CDS             15377..17395
                     /gene="uvrB"
                     /locus_tag="PXC99_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit B"
                     /protein_id="HDL5416829.1"
                     /translation="MSKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVT
                     GSGKTFTIANVIAKLNRPAMVLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPE
                     AYVPASDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQM
                     MLHLQVGAMIGQREILSRLAELQYTRNDQAFQRSTFRVRGDVIDIYPAESDEVALRVE
                     LFDDEIENLSLFDPLTGHSLGKVPRYTIYPKTHYVTPRERILEAIEQIKVELADRRTY
                     FIKENKLLEEQRIAQRTQFDIEMMNELGYCSGIENYSRYLSGRKEGEAPPTLFDYMPA
                     DGILVIDESHVTVPQIGGMYRGDRARKETLVQYGFRLPSALDNRPLRFEEFERLSPQT
                     IYVSATPGAYELEKNPDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIHKRVAVDER
                     VLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVERVEIIHDLRMGMFDVLVGINLL
                     REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRITNSMQKA
                     ITETERRREKQMKYNEEHGITPQALNKKVGELLDIGQSDKPKRGKQAVKKAENSATDY
                     KPKSRKELEKELKTLEQQMRDFAKDLEFEKAAAVRDKLQHLKAYLLEV"
     gene            17398..17808
                     /locus_tag="PXC99_000334"
     CDS             17398..17808
                     /locus_tag="PXC99_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416830.1"
                     /translation="MISRSLFSKLILFAKIVIFSQLVFMVVIWIAHHIMREYSNPFER
                     FGTLFNNVFLTFIIPMMVSSAVIVYKGYTQKNEDKVFWIYMGFFLIWILGFIYFEPAV
                     YDKSLKISGAGFGAMLSIIICSKLLPKETNKEQL"
     gene            complement(18029..19117)
                     /gene="purK"
                     /locus_tag="PXC99_000335"
     CDS             complement(18029..19117)
                     /gene="purK"
                     /locus_tag="PXC99_000335"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HDL5416831.1"
                     /translation="MQKSAIYPPVYVLGNGQLGRMLRYAGAPLDIEVKPLAFDAPVFD
                     IEPNSIITAEIERWADTPLTQLLGNHPNFVNLNVFGKLADRFTQKSLLDELHLATSKW
                     QLLENAEHWQDIFQHIGEKVVVKRRTGGYDGRGQWIVTQDSIHQITPELFGEVIAEKF
                     IPFEGEISIVGARFRDGSTRFYPISHNLQQNGILRYSVSDVNLPNQALYQQQAEQMLA
                     TVMQKLEYVGVMAMECFVVGDKLLINELAPRVHNSGHWTQLGCAISQFELHLRALLDL
                     PTPALDQIAPSVMVNLIGIEHNKQWLSLPFSQLHWYGKEVRAGRKVGHINLTHTDKNG
                     LIELLEQLRPSLTEDFHSGLDWAINKLK"
     gene            complement(19136..20101)
                     /locus_tag="PXC99_000336"
     CDS             complement(19136..20101)
                     /locus_tag="PXC99_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HDL5416832.1"
                     /translation="MSKKLLILHTGGTISMKEGEDGKVSPSNENPLLAALERLNHPAK
                     LAQESLFNIPSPHINIEHWQQLKMRIEKAVNEENVDGVVITHGTDTLEETSYFLDLAL
                     SVNIPVVITGAMRSSNELGADGLINLQSAILVALNEESRDKGVLVVMNDEIHNAKFVT
                     KTHTTNVATFQTPTFGPCGLVTKESVIFFQKLTTYERYPIQQVTKANVQLLKAYAGMD
                     SFLLEQLAKSKCDGVVIEALGAGNLPPSCLAGIEALVNANIPIVIVSRAFNGITQDVY
                     DYVGGGKQLKQKGIIFTKGLSGQKARIKLMVLLSQTLDKPLSDYF"
     gene            complement(20116..20613)
                     /gene="purE"
                     /locus_tag="PXC99_000337"
     CDS             complement(20116..20613)
                     /gene="purE"
                     /locus_tag="PXC99_000337"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HDL5416833.1"
                     /translation="MPNKAEIAIVMGSKSDWATMSEATQILDQFGLSYHVEVVSAHRT
                     PDKLFSFAETAETNGYKVIIAGAGGAAHLPGMIAAKTIVPVLGVPVKSSMLSGVDSLY
                     SIVQMPKGIPVGTLAIGPAGAANAGLLAAQILAAFNPDIAEKLRIFRQTQTQMVLDNP
                     DPRVE"
     gene            20787..21431
                     /gene="sspA"
                     /locus_tag="PXC99_000338"
     CDS             20787..21431
                     /gene="sspA"
                     /locus_tag="PXC99_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stringent starvation protein A"
                     /protein_id="HDL5416834.1"
                     /translation="MTSSINKRSVMTLFSDKNDIYSHQVRIVLAEKGVPYEIENVMLG
                     SISEDLLELNPYGNIPTLVDRELVLFNPRIIMEYLDERFPHPPLMPVYPVSRGQCRLN
                     MYRIEQDWYSQIDIVNKDPESAEGKKALAQLKEDVLALAPIFAAKPYFMSDDFSLVDC
                     YIAPLLWRMQILGVKFSGATAKPINAYMTRVFQRDSFIQSVGGEAPKHLMDDKD"
     gene            21431..21838
                     /locus_tag="PXC99_000339"
     CDS             21431..21838
                     /locus_tag="PXC99_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HDL5416835.1"
                     /translation="MKPLRPYLYNAYYNWIIDSDNTPYLLVNAEFPDVDVPVEFVKEG
                     KIILNISPRSIGQYIVADEYISFSARFQGMLRDIYIPFGAMVAIYAQETGDGIMFQEE
                     AYYTEEAYQARVRAVEQPKKIKAKKTSTLKLVK"
     gene            22035..22994
                     /locus_tag="PXC99_000340"
     CDS             22035..22994
                     /locus_tag="PXC99_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5416836.1"
                     /translation="MKFHKTLLVTLLSSLSVAALAQDKIQNVAITAIVEHPALDSIRK
                     GVIEELAREGFVDGKNIKIDYQSAQGSTATAAQIARKFVGDKADIIIPITTPSAQPVV
                     AATRSIPIVFSGVTDPVAAKLVKSWEPSGTNVTGISDHKAMAPQVKLIQTLVPDLKAV
                     GYVYSAGEVNSAIVLEELKQEAQKQGFTIVPVAVQRSADIGTAARSLNGKVQAIYISE
                     DNAVVSAYEALHKAALEAKIPVIAADRDTVQRGAVAAYAVNQYDIGVATGKVAARVLK
                     GEKAGTIPIQEVSKLELSINTKTAKELGITIPEVLIKEAKQTF"
     gene            23074..23334
                     /locus_tag="PXC99_000341"
     CDS             23074..23334
                     /locus_tag="PXC99_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005718542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HDL5416837.1"
                     /translation="MGWIAAIIVGAIIGWIASAVMKSEGGLCKNIIIGILGSSLGRWV
                     FGDVLGIGSAYSAGDFNIVGIFFGVLGAALLIFILRKLSIIN"
     gene            complement(23384..24274)
                     /locus_tag="PXC99_000342"
     CDS             complement(23384..24274)
                     /locus_tag="PXC99_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5416838.1"
                     /translation="MDKLNAISLFCKVIETQSFTQAAQQAQISLPMASKLVAQLEEHL
                     NVRLLQRTTRKITPTEAGLLYYQQCLPILNELKEADASVSNINSTLQGKITMSVPMDF
                     GSRFIAPYLGKFMEDYPNLALHIEFSDRRVDVIAEGFDLVLRIGSLADSSIVAKKIAD
                     SHLVLVASPDYLARFGEPKGLEALVERDCLLYEYHPQWQFSQQGQKMQIKPQGKIYSN
                     NGYALVQMAKAGLGIINIPKFLIKHELKNGELIPIMPFLTQEPLQISLLYPNRRYLSP
                     KVRILIDFFTQLMQEQKEYI"
     gene            24404..27010
                     /gene="topA"
                     /locus_tag="PXC99_000343"
     CDS             24404..27010
                     /gene="topA"
                     /locus_tag="PXC99_000343"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000513593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HDL5416839.1"
                     /translation="MGKSLVIVESPAKAKKINQYLGSNYVVKSSVGHIRDLPKSGSDE
                     KTEKAKPISTKGLTAAEKAKIKAEKERVALVKRMGIDPYNGWKANYQILPDKEKVVSE
                     LKSLAKKADHIYLATDLDREGEAIAWHLREIIGGDDSRFSRVVFNEITKDAIKKAFDD
                     PQPLNIDRVNSQQTRRFLDRVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREI
                     KAFQSEEFWTILANTQINRKKLPLELTTYKGKKFSASNEAEANVAVRALEQSDFIVSN
                     IEAKETSSRAAAPFITSSLQRAASTRLGFGVKKTMMLAQRLYEAGYITYMRTDSTNLS
                     REALAMARGYIQDNFGANYLPEKANVYRSKDNAQEAHEAIRPSDVNVKMADLKGMDKD
                     AERLYDLIWRRFLACQMLPARYDSTAVTVSAGDYELKANGRVLRFDGWTKVLPVQGKN
                     PEDQELPAVELHQKLTLDEIVPSQHFTKPPARFNEASLVAELEERKIGRPSTYASIIS
                     TIQERGYVRTENKRFYVEKIGEVVTDRLNESFKDLMNYDFTANMEEVLDQIAEGSKNW
                     KEELNTFFKHFSEELSQAELDELEGGMKPNSLVPTDIDCPTCGRKMAIRTASTGVFLG
                     CTGYALPPKERCKTTMNLIPEAEFFNVLDSDSETKALMARKRCPKCDSAMDSYVIDAE
                     RKLHVCGNNPNCDGHIIEQGSFKIKGYDGPVVECDKCGSDMHLKLGRFGKYMGCTSCD
                     NTRKILKNGEVAPPKEDPIAFPELKCEKADAYFVLRDGASGVFMSAHNFPKVRESRAP
                     KVVELAQYRERLPEKLQYLADAPQQDPEGNEAIIRFSRKEKRQYVTSEKNGKATKWIV
                     DYLDGKWVERKK"
     gene            complement(27060..27998)
                     /gene="yvcK"
                     /locus_tag="PXC99_000344"
     CDS             complement(27060..27998)
                     /gene="yvcK"
                     /locus_tag="PXC99_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine diphosphate-N-acetylglucosamine-binding
                     protein YvcK"
                     /protein_id="HDL5416840.1"
                     /translation="MENTDIIPFKPTRHHYLNQLNAVVALGGGHGLGRLLSALSFLKE
                     RLTGIVATTDNGGSTGRIRSQQGVIAWGDLRNCLNQIIVKPTIASRLFEYRFAGTGEL
                     AGHNLGNLILTALENMQIRPLEGINLVRELLHVRSQLIPMSEIPVHLIAQLHSGESVF
                     GEVQIDSLAETPQHLALDTMVVATPEAISAIQSAELILLGPGSFFTSIMPNLLVAGIA
                     NSIAQSKARVVFIDNIGQEHGPAGQLSLNQRIEWMENCIGQARINAVITTDDAGSELP
                     EHIQILRKNLSANDVYYRHDRNKLSKAIDELLAQNI"
     gene            complement(28012..29088)
                     /locus_tag="PXC99_000345"
     CDS             complement(28012..29088)
                     /locus_tag="PXC99_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDL5416841.1"
                     /translation="MFQMLQDWYRKKFTDPQIVVLFSILLIGFGIIYFFSDLLMPLLV
                     ALVFAYLLEWPIRFLSSKLKLPRTLSVILVLGGFIALLSFLGVVLLPSLWNQAVTFIQ
                     DLPSMFNLLNAWLQALPEHYPELVDYATLDSIVNTAKSNILSMGESLLTLSINSIISL
                     VGLGIYTFLVPLMVFFLLKDKIVLMRSFSKVLPQNRRLATRVWFEMQQQIANYIRGKF
                     LEILIVGVVTYIIFLFFDLRYPLLLSVAVGISVLVPYIGAVLVSIPVMLIALFQFGLS
                     PDFYYLMLAFIISQLLDGNLLVPFLFSEAVNLHPLTIIIAVLIFGGLWGFWGVFFAIP
                     LATLVKAVLQALPSAQSDAIILEK"
     gene            complement(29119..29874)
                     /locus_tag="PXC99_000346"
     CDS             complement(29119..29874)
                     /locus_tag="PXC99_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5416842.1"
                     /translation="MKKEEVGHHFLARLGKTRLRPGGKLATDWLIANGDFDKNKKVLE
                     VACNMGTTAIQLAQQFECQIVGIDLDEDALEKARKNIKENHVEHLIQVQRANATKLPF
                     DDESFDIVINEAMLTMLPLEAKEKAIREYFRVLKPNGFLLTHDIVIQDKDSDTLLAEL
                     RDAINITVSPLAKADWKSLFQRCGFRNVDTFSGEMSLLSPKGLIHDEGVLGAMKIIGN
                     ALKPENRETFNKMYKLFNDPDKKLGFIAVCSQK"
     gene            30026..30235
                     /locus_tag="PXC99_000347"
     CDS             30026..30235
                     /locus_tag="PXC99_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome alternative rescue factor ArfA"
                     /protein_id="HDL5416843.1"
                     /translation="MSKQKNDYLHQRGQIKESAVKALVTDPLFRQRVERNRKGKGSYR
                     RQEKHKKTIYGQKETPFKNIRLESF"
     gene            complement(30284..31006)
                     /gene="bioD"
                     /locus_tag="PXC99_000348"
     CDS             complement(30284..31006)
                     /gene="bioD"
                     /locus_tag="PXC99_000348"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HDL5416844.1"
                     /translation="MPSLFITGTDTNVGKTVVTRAIIQTLTKHSFPVIGYKPIACGGD
                     DSLPTEPTQYDYATEDNSDVLTILDSCPTNVSYRDINSYTFIHSSTPVFAALDAVHHI
                     QLEKLNTDLKRLENAYPNVVVEGTYGWLTPINKDYYFADWVMQNNMPVVLVVGIKEGC
                     VNHALLTANEILQRGVKLVSWVANRVNPGLRHYHELIELLTQKINAPLLGQIPYMGHP
                     EHKELSSYIQNPEPLLAYFSKP"
     gene            complement(31054..32241)
                     /locus_tag="PXC99_000349"
     CDS             complement(31054..32241)
                     /locus_tag="PXC99_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HDL5416845.1"
                     /translation="MFSDNKALHLGKIYHLIEQFELISRTDLAKLSGLAPASVTNLTK
                     ILIDNHFILERTVQTTLSRGRPSVGLAVSNFFWQLLCVTVSSHKIEISLCKLNGAEIY
                     KQDYTISAENYPRLNDFILNFITNFRQLYCVNTSQLLAVSISVIGKINAEKDSITQLG
                     NKNIFCNITSKLSPLFHCPILLSEHFQLWLLAESTVGSLINQDNAIFLQLDDTVNLSV
                     LLSGSLLSKQSKMNVDNMLMPRFSHLSDEIFPELDEIHRYKLVNQVTFPAIVRLIDRY
                     LPNNLKSQEQKISWLCQKIDENQPLALAILSHITDNLAYALMNLVNIFSSEKIMLNSP
                     LIKIKEPLFTQISEKLHKNLLQTNLKIDLVTSQYDWNSPLIACSAIKQGIYDGNLIKD
                     RIN"
     gene            32375..33493
                     /gene="rnd"
                     /locus_tag="PXC99_000350"
     CDS             32375..33493
                     /gene="rnd"
                     /locus_tag="PXC99_000350"
                     /EC_number="3.1.13.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HDL5416846.1"
                     /translation="MESLIHYQWVETNEQLEAVCEQARKTKVVALDTEFIRTRTYYPI
                     LGLIQLFDGQQVSLIDPNTISDFSPFVSLLADKNIIKVLHACSEDLEVFEYQFKQLPE
                     PMLDTQVMAAFAGIGISMGFAKLVSHYLNIELDKGASRTDWLARPLSAEQLQYAAADV
                     WYLLPVYEKLAQALTKSTWQSAVAEECVALLKKAKQPINKEKAYKNIANAWRLNREEL
                     AILQVLAKWRIEEAQKRNLALNFVVKEASLVQIAKSCPKHTSSLLEFMHPNEVRIHGK
                     KILWLVEQGKAIESNDYPELIQRLVDEKGYKYYMQAMLQKLLEIQPLDIVPELVASKR
                     QLNQLFKWYIDGKPSEKIPELLIGWRKPFGEQLLSVLS"
     gene            33550..34032
                     /gene="lrp"
                     /locus_tag="PXC99_000351"
     CDS             33550..34032
                     /gene="lrp"
                     /locus_tag="PXC99_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005695827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-responsive transcriptional regulator
                     Lrp"
                     /protein_id="HDL5416847.1"
                     /translation="MENKKPPKALDAIDLKILNELQRNGKISNIELSKRVGLSPTPCL
                     ERVKRLEKNNVIMGYKALLNPELLDAPLLVIVEITLVRGKPDVFEEFNKAIQQLDEIQ
                     ECHLVSGDFDYLLKTRVADMVSYRKLLGTTLLRLPGVNDTRTYVVMEEVKQTNYLLLK
                     "
     gene            34043..36703
                     /locus_tag="PXC99_000352"
     CDS             34043..36703
                     /locus_tag="PXC99_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK 4TM domain-containing
                     protein"
                     /protein_id="HDL5416848.1"
                     /translation="MIEQLKPHLKGKENLIKLMLLLTGFLGVYLLIAWASYSPLDNAW
                     SVASSITQTTLNKTGHFGAWSIDMLYAMFGKVAVLVPIALIIFSIYSLGMGLSVDMKW
                     KTVFIRLASFLLLMVGLAGLFSVLFSNSAYYLSGGFVGGVWETILSDTIGQFGALLIA
                     MLFTIAGLYFCSVQSLLPILTQFYEWIMAKSEESKTAESLQHLQNTEQKQPLVTENEA
                     VEVVDDHKPQFTDISAFKRPNISGLRHSENVEIDNREMYEIERDLELPTINILIQPDM
                     VNQVAEQATSGYELPNEESNVLQMPTIRLNTAIENEVDTIENSSSLEDLKIAESMLPQ
                     IQLDNDIEDTEEAIDDVREITPEFMVTPPKAMKDVSEQPAYPKGYGDTLIHPLLQRKV
                     ITEKPTTPLPTLDLLDKAPIQSQQITEQEIRETSVRLEAELANFGVKATVEDVLVGPV
                     VTRYEIQPAAGVKASKITNLASDIARGLMFKAIRITEVIPNKPYMGIETPNKHRETVW
                     LRDVLDSDEFRNTTATLPMALGKDISGEPVVVDMAKMPHLLVAGQTGGGKSVGVNTMI
                     LSLLFKLTPEQVRFIMIDPKVVELSIYNDIPHLLTPVVTDMKKAANALRWAVEEMERR
                     YLLVSHLQVRNIEGYNAKIDQAAAMNLPIPDPTWRPGDSMDSLPPPLQKLSYIVLIVD
                     EFADLMMSAGKEVEEYIMRIAQKARAVGIHLILATQRPSTDVITGVIKANIPSRIAFT
                     VASQIDSRTILDSGGAEALLGRGDMLYSGAGSPDIIRIHGAFMKDEEVQRVADNWRAR
                     GKPNYLESIVESRSEEADGKNDGGTGDLDPLFDEVVEYITETGSVSISNIQRRFSLGF
                     NRAARIVDQMEAQGIVSEPLKGGKREVLAR"
     gene            36855..37694
                     /locus_tag="PXC99_000353"
     CDS             36855..37694
                     /locus_tag="PXC99_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HDL5416849.1"
                     /translation="MRLDDIKESKNVEDRRFNNVGRTKVGRGKGGILTFIIVLVGAYY
                     GVDLTGLMGGGVEYEEQTSALNESEEKQLRTLSAKVLTTTENIWTSYFQQNGLTYKEP
                     SLVLYRGAIQTACGTGQSAMGPFYCPVDQKVYLDLSFYDDMRKKLRASGDFAFSYVIA
                     HEVGHHVQNLLGITSKTQRAQMKASSKAEANQISVNVELQADCFAGVWGHQLAKANRL
                     EEGDVEEAFNAAQAVGDDRLQQQSRGYVVPDSFTHGSSAQRLAWFRKGLTTGNPAVCN
                     TFN"
     gene            37783..38865
                     /gene="aroG"
                     /locus_tag="PXC99_000354"
     CDS             37783..38865
                     /gene="aroG"
                     /locus_tag="PXC99_000354"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroG"
                     /protein_id="HDL5416850.1"
                     /translation="MSYIKNDDVRITSIEELLPPIALLEAYPASDVAAETVAKTRQSI
                     HKILHGADDRLLVVIGPCSIHDPKAALEYAQKIKAMRADPKINQNLEVVMRVYFEKPR
                     TTVGWKGLINDPYLNETFALNDGLRIARKVLSDINDLSVPTAGEFLDMITPQYVADFM
                     SWGAIGARTTESQVHRELASGLSCAVGFKNGTNGSVKIALDAISSAKSPHHFLSVTKF
                     GHSAIVSTAGNPDCHIILRGGDSATNYDADSVAAACAAIEKSGGRPHVMIDFSHANSQ
                     KQFKRQMDVCADVCNQIAGGSDFISGVMIESHLVEGRQDLIEGKGLEALVYGQSITDG
                     CIGWEDSEKALFALAEAVEKRRNFAK"
     gene            38952..39644
                     /gene="tsaB"
                     /locus_tag="PXC99_000355"
     CDS             38952..39644
                     /gene="tsaB"
                     /locus_tag="PXC99_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HDL5416851.1"
                     /translation="MKPSILALDTATEACSVALQYNGNITFLDEISPRSHTQRILPMV
                     DELLNQANIELKEVNYLVFGRGPGSFTGVRVGVSVAQGLAMGANLPVVAVSNLKAMAE
                     EAYQKLGATKVIALIDARMNEVYFAQFERKGEEWNEVVAEQVCSPEVAISQFQMSEET
                     VVVGTGWAAYSQFSEQNLPLVISDITLPSSRYMLSIAETEIQKGNIQSAFEIEPVYLR
                     NEVTWEKLPHKQ"
     gene            complement(39661..40470)
                     /locus_tag="PXC99_000356"
     CDS             complement(39661..40470)
                     /locus_tag="PXC99_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDL5416852.1"
                     /translation="MTMTVIIILIICGIIVNITSALFGIGGGVLMMPILHSLFPELPL
                     QVISACSLTIVIGSATINLCLFHHQQIKINRKNVLIWSLAMMLGVQIGFELSFLFSDN
                     SIIAIFILTLLTLSFKTLFHKPRVKAIVPPKPKEAVSNATMCSLGGLIAGITGIGGGS
                     IMAPIVTQIRSVSPKQVAVYTNYMMVIGGIGNLYGYLSRPFVLNSTLATWQIGYVNFA
                     IVGTVVISSLFTVYFSMKLRNILSPELTTKLLGVILFTIACYMGFLQYLFT"
BASE COUNT        12161 a         7835 c         8615 g        11898 t
ORIGIN      
        1 tgaagtaaaa gaccaagata aatttatttt tgtttatcgt taccttaaaa atgcaaaaca
       61 ttttattggt tttgattatc ttcctgtaat tggtgatctt ataaagcata tgaaagctca
      121 tcatctagaa aatattgcct tcattaaaga taataattgt gattggggtg gaacagtatg
      181 cgattatttg gcaagttata gtcaaaaaaa taatattaaa atattgtttt tcacccaaaa
      241 ggaatccatt cataaattat cgtttgaatt ggctcaaagc attcatcggt ttgatggcat
      301 tattgtgcct tcatttgatt ctgctaaaat cttatatagt tcattttgtt tatcaaataa
      361 gataccacct aaaatataca cctgctataa aaatagcttt aataatgatg accgattttt
      421 tcaatataga ttagattacg attttatttc taatcagatc ttatctattc ttcgagaaga
      481 caatgctatc ataaaagagc atcacttttg gtttccaaag attatagaaa gctcaaataa
      541 tacactacct cataatttaa aatgaaacgt ttcaattgga aaaagtggat tttgtgactg
      601 agatcacaaa tttaaacatt ggtctgtatt tttgagagat tttgtttgaa actgccggca
      661 aattcgctta accttaaggt aacaagaata agtgttgtac ctagcaacct aacacataaa
      721 tttgctttcc gagtggcccc aagaattggg gcttttttta tgcttgatga gtcgttttga
      781 gagtaaaaaa ataccagcat atttgctggt atttgaatga agagagttag attagaacgc
      841 tacgctttct tttaagctga cagttaagtt aaatacaagg ttgtctgccg aaccatcttt
      901 gctgtctaag cagtagtaac cttcacgctc gaattggtag tcttgttccg gtttggcgtg
      961 agctaaactt gactcaacaa aaccatgctt aaccactaat gattcaggat ttagcaccgc
     1021 attgatgtct tcttccgccc ccgggtttgg tactgtaaat aggcggtcgt aaatgcggaa
     1081 ctctgccggt ttgttatctt cagcagatac ccaatgaatc acgcctttta ctttgcgacc
     1141 atcagccgga tttttgccca atgtatccgg gtcgtatgtg caaaaaatag ttgaaattcg
     1201 accgcttgca tctttttcca cacgctcagc tttaatcaca taggcattgc gtaaacgaac
     1261 ttctttgcct aagactaaac gtttatattg cttattggct tcttcacgga agtcggcttc
     1321 atcaatataa atctcacggg tgaacggtaa atcacgctcg ccaagctctg gacgatttgg
     1381 gtgattaggg gcttttaata tttccttttc accgaagttt tcaatcacca ctcgaaccgg
     1441 gttaatcacc gccatcgcgc gtggtgcgtt ttcatttaag tcttcacgaa tgcacgcttc
     1501 aagggcagag tattccacca cgttatcttg cttggttacc ccaatacggc gacaaaattc
     1561 acgtaaagac gctggggtat aaccacggcg gcgtaagccg gaaatggttg gcatacgagg
     1621 gtcattccaa ccatcaacaa tgccgtctgt gactaatttt aataatttac gcttagaggt
     1681 taaagtacct tctaaattta aacgtgaaaa ttcgtattgg tgcggtaacg gtctttcaat
     1741 cgaaatattg tccagcaccc aatcatataa gcggcggtta tcttggaact ctagcgtaca
     1801 tagcgagtga gtgattcgct caatcgcatc ggaaatgcag tgggtaaaat cgtacatcgg
     1861 gtagatgcac catttatcac cggtttgatg atggtgagca aatttcacac ggtaaagcac
     1921 cggatctcgc atcacaataa acggggacgc catatcaatt tttgctctca agcaggcttt
     1981 cccttccgca aactctccgt ttttcatttt ttcgaataac gctaagtttt cttccacgct
     2041 acgatcacgg taagggctgt ttttgcccgg ctcggttaaa gtaccacggt attcacgcat
     2101 ttcatcaggc gataattcat caacataggc taatcctttg ttgattaact caatcgcata
     2161 gccataaagc tggtcaaaat agtctgaggc ataacgaggc tcaccctccc atttaaaacc
     2221 tagccactcc acatcttgct taattgaatc tacatattcc acgtcttctt taaccgggtt
     2281 ggtatcatca aaacgcaagt tacataaacc gttataatct tgagcgatac caaaatttaa
     2341 acagatagat ttagcgtgtc cgatatgcaa ataaccgttt ggttcaggtg gaaaacgagt
     2401 gtaaacattg ttgtgctttc cgcttgctaa atcttcatca ataatatggg taataaaatt
     2461 ggctcgagtg ccagtttctg ccgttaaaat ttcttcgctc atagttctct ctaaatgtat
     2521 caataaaaat aacggattat tctacactta attgaaacag acttaaagac taaagcaaaa
     2581 ttcctcggtt tcctccaaag aattttgctg ttttagtaag atgcaatgga attgcaaatt
     2641 tttagctaaa tttaaccgct tgttattgcc tgatttcacg gctttcgctg atcataaaat
     2701 tcgcaatccg tttggcaatc cgccatttac cctcttgttt aacataggta tcggcataac
     2761 gcacgctgtg atcgtgcaag atctctttgc cctctttggt ttctaccagt ttcaccgcac
     2821 aatagttgat cgctgtggcg ttattttcat caataaaagg cacggtatgc tgaccgttta
     2881 aatgataaac gctgtgaaac ggggttaaaa aggtggtaaa cacctgttcg atttctgcca
     2941 cgccgtgcat ttcaaacacc aattttccgc cgatgtaggt gtttacgacg gcatcttgcg
     3001 tgaaaagcgg catctgctcg gcaacctttt tttcatcggc aaggttagag aatgtatcta
     3061 ctaaatcttt tagtgctaaa cgatcttgga tttgttgtaa gttcattgtg ttttccttct
     3121 gatttttgca aattttcttt ggtttttcac cgcttgttag gctgcaatac caacactttc
     3181 acggatttcg ctgttttcac gcaaaatgcg agccacaaaa tcggcaatgg atttgcggga
     3241 aacgctgtgt cctttgaacg gttcgccttt gtgagtcagc tgatattgca cttccgaacc
     3301 gttggtaaac cagcccgggc ggacaacggt ataatccaac tcgctggctt caatcacggc
     3361 tgccgattgg cggtaaggct ctaaaattgc cccgtgatct tcgccggttt cgccataaat
     3421 ccccattgag ctaatccaaa ccaagcgttt tacctgagct tcattcattg cgttcaccac
     3481 atttcccgcc atcgctttta agtcgccggc aagtccagcg taaacggcat caacgccttg
     3541 cattgcttgg gttaatgcgt ggaaatccaa cacatcgcct tgcacaattt tgacgcgttc
     3601 agtttcaaat ttcgctactg attgcggacg acgggcaaaa agggttaatt gcacattatt
     3661 gtcttttagc agttcaggaa tcacgacatt cgctaggcta ccgcttgctc ctaaaattaa
     3721 gatctgtttc attgctgttc tccattgaat gaagtcagta tagcggtgta gattgcattt
     3781 gattagtagg gtaaaatcgc ttgaagtaat gagaaaaatt cattaataag gtggttaaat
     3841 gaaagaaaac ctcaacgatt taagagcttt tttgttggta gcacaaacga gcagttttac
     3901 caaagcagca gcacagatgg gcgtgtcgca gtcggcgttg tcgcacagca ttcgggggat
     3961 tgaagaacgg ttgcaaatca agctgtttca tcgcaccact cgtagcattt caaccaccga
     4021 ggcaggggag aggctgtatc aacggctgtt accgctgttt gatgaaatcg accaagaagt
     4081 aaatgggctg agtgagtttc gcaatgcgtt aaaaggcggg ctgagaatta acggtaatga
     4141 acacgttttc cgtgatgtgc tggcagataa attcgctgag tttgtcaaac gttaccctga
     4201 agtagcattg gagctagtgg cggaagatcg ctttgtagat attgtcgccg agcgttttga
     4261 tgccggtatt cggcttgggg cagatgtggc gaaagatatg attgcactac gcatttcgcc
     4321 cgatgtgaaa atgaccgcag ctgccagccc caactatttg gcacagcacg gcacgccgaa
     4381 aacgcccttt gatttaaccg aacatcattg tctcaaacat cgtcttgcga cattgggcgg
     4441 cattctggcg tgggaatttc gggatcccat caccaagaaa atcgttaaat ttcaaccgca
     4501 gggcaatctt actgccaata acggcttctt gctgcaacac tatgccaaac aaggtttagg
     4561 cattctttgg agtccgcaag acagcattca aaccgagctg gataacggca gcctcgtgcc
     4621 gattttaacc gactgggcaa tgcagtatga gggctatcat ctctattacc ccaaccgtcg
     4681 ccaaaattcg cctttgctga aagcgttaat tgatgtgctg agaggatagg taaaaatgag
     4741 cggtcgtttt tagcaaaaaa ttgaccaaaa aacgaccact tgtagagaag ctaaattatt
     4801 tcacacgaga aacatattcg cctgaacggg tatccacacg gataacttca ccgatttgaa
     4861 cgaataaagg cacgtttacc acagcaccgg tgcttaatgt tgccggttta ccgcctgtac
     4921 ctgcagtatc gccttttaag cccgggtcgg tttcgacgat ttctaactca acgaagtttg
     4981 gtggtgtgac tgcaattgct gaaccgttcc ataaagtcac gatacattct gcattatcaa
     5041 ctaaccattt tacgttgtcg cctaacgctt tttcatctac cgagatttgt tcaaaggttt
     5101 cagggtgcat aaagtaccag aaatcaccat cgctgtaaga gtagttgtag ttagaatcta
     5161 ctacatctgc tgcttcaacc gaagtgcctg atttgaagtt gatctctaat actttgccag
     5221 agattaattt acggatttta gtacgggtaa atgcttgacc tttacccggt tttacgaatt
     5281 cgttttcaac aattacacaa ggttcgccat cttgaataaa ttttaaacct tttttaaagt
     5341 cgttagtgct gtagctagcc attatttcct caattattta aaaaataaca ataaattaac
     5401 aaattttgaa cccaacccta ttgggtttgt caaaaagagc catataataa cctaaattca
     5461 caaaattagc gaaagatctc ttgcgatttt tgctataatt tttcaaactt tattgataag
     5521 gaatgcgaat gaaaaaactg attactcttt ctgcgatttt agccgtttct gttgcaaccg
     5581 tggcagaggc aaaacgtggc ggtgggagct tccgttcagt tagcccgtca aaagcggtag
     5641 caactaagcc ggtagcttct caaaaatcaa ccacaaatca gcaaacgcaa caaaaagatg
     5701 ctacttttgc caatacgcca aacagtgcaa ctgcccagcc acaagtgcgt caaggcagca
     5761 cgatggcaaa tgtagcgatg ggggcagcag ccggttatat tttaggtgat atgatgtcat
     5821 caaatgcaca tgcaaatcag cctagccagc ctgcggatgc aaatgcacaa gcggtcaatt
     5881 ctgcacaaaa tgttgcaaat ggagcagttc ctgctattgc agaatttaag agtattggcg
     5941 gtcaaatcga tccgttttta gtagaaaaaa ccgatggtta tcgccgttat tgtatttcag
     6001 gcgtgcaata cctagtcgct gcacaaggtg tacaaacctc accaactgta atggttaatc
     6061 caaatggcac gccattacaa tgtaacttaa ttccataatt atttttattt gcgggcaggc
     6121 aaaaacctgc cccttgtatc tacaatattc aatgcaacca attcaaatca aaccgctttg
     6181 gctaaccgag ctggctcaag cctttaataa ccctatcgac ttattacaat ttcttgaact
     6241 caatccaaat gattttgagg gcgatatagc tgcccgtaaa ttatttgctc ttcgagtgcc
     6301 aagaatgttc gccgaaaaaa tggaaaaggg taacccaaac gatccgcttt ttttgcaagc
     6361 aatgtcttta caggcggaat ttattgaggc agaagggttt gtggtagatc cattggaaga
     6421 gcaacaaagc ccagcaccga atattttaca taaataccat aaccgtttgt tatttatgct
     6481 aaaaaacagt tgtgcgatta actgccgtta ctgttttcgc cgtcatttcc cttatgagga
     6541 agtgaaaagc ggtaaagctg tgtggcaaca gggactaact tatattgctg agcatcccga
     6601 gctggaggaa gtgattctgt ccggtggtga tccgctgatg gcaaaagatc aggacttaga
     6661 ttggatatta acgcaattag agcagatttc gcatatcaaa accctgcgta ttcattcacg
     6721 cttgccggtc gttattccca atcgaattac gacagaatta tgtgaacggt tatcaaaatc
     6781 tcgcttgaat gtcgtgttgg ttacccatat taatcacgcc aatgaaattg atgctgtttt
     6841 tgcaaacaaa atggctcaac tgaaaaaagc cggcgttgta ttgctgaatc aatcggtgat
     6901 gttaaaaggt gtaaacgata atgctcaaac cttaaaaagg ttaagtgata aactttttga
     6961 atatgggatt ttgccttact atttgcattt atttgataaa gtggcagggg cgagccattt
     7021 ctatattgaa gatgaacagg ctggtgagat ttaccgagaa ttacagcgta tcacttcagg
     7081 ctatcttgtg ccaaagctgg caagagaaat agcgaaagag ccaaataaaa ttttgaaagg
     7141 ttagcttaaa cagaaatcaa gaaacaaaag gcgaaaatgg taaaattttc gcctttttta
     7201 accgcttgtt gcaagcggtt aaattctctt acttttttgc aaattagaag ttcgcattgc
     7261 gtggagcacg tgggaatggg attacatcac gaatgttttg taacccggtt acatacacga
     7321 ttaaacgctc gaaacctaaa ccgaaacctg agtgtggcac tgtaccgtat ttacgcaaat
     7381 cacgatacca ccagtaatct tcagggttta agcccatttc attcatacgc tgatctaaca
     7441 cttctaaacg ttcttcacgt tgagaaccac cgataatttc accgattccc ggagctaaaa
     7501 cgtccattgc ggcaaccgtt ttgccgtcat catttaaacg catatagaag gctttaatgt
     7561 cttttggata gtttttcacg accaccggcg atttaaagtg ttcttcggct aagaaacgct
     7621 cgtgttcaga ggaaagatcg attccccaag acaccgggaa ttcaaattct ttgccggatt
     7681 tcaataagat ctcaatcgca tcggtgtaat ctacttgagc aaatggcgaa ttgataaagt
     7741 tttctaaacg actaatcgct tctttatcaa cgtgtttaac gaaaaattcc atatcatctt
     7801 tacgttctgc aagcaccgct ttaaacacat atttcagcat atcttcggct aattttgcat
     7861 tgtcgtttaa gtcggcaaag gcaacttccg gctccatcat ccagaattct gcaagatggc
     7921 gagttgtgtt tgagttttct gcacggaatg tcggaccgaa agtataaact ttacttaagg
     7981 cacacgcata ggtttccgca tttaactggc cggatacggt taagaacgat tctttaccga
     8041 agaaatcttg gttaaaatcc actttgccgt tttcgccacg aggtagattt tctaaatcca
     8101 gcgtagaaac acggaacatt tcacctgcac cttcagtatc tgaggcggta attacaggtg
     8161 ttgctaccca atagaaacct tgctcgtgga agaaacggtg gatagcttga gctaaacagt
     8221 gacgaacacg agcaactgca ccgattaagt tcgtacgagg gcgtaagtga gcgacttcac
     8281 gcagatattc gatagagtgg cgtttcgctg ccattgggta ggtatcagga tcttccaccc
     8341 aaccaagcac ttccacttta cttgcttgta attcaacggc ttgaccttca gcaggggatt
     8401 ccacaacttt accggtcacc accacagagc aacctgcggt taaatgtaat acttcggcat
     8461 tataatttgg tagatcgtta ttaataatcg cttgaattgg gtcaaagcaa gaaccatcgt
     8521 aaacgctcaa gaaagataaa ccggcttttg aatcacggcg ggtacgcacc caaccacgca
     8581 ctgtcgcttc ttcacctacc gctatcttgc cggataggat ttccgaaact gttggaaatt
     8641 tagacattga atacctcaaa ttctttgttg tgagttttaa tataagaaac gttccgtatt
     8701 ctacaagaaa atagggggaa atataataat tttacggaat tatttgcaaa tttgtgagtc
     8761 tatataagca ttgcaagtag ttaaatctga ttttgcttgg tgttaaaaaa ttttttattt
     8821 tttaatgaac tttcgttcag ttaggcagtc tgagtatatg taacagattt atgcaagttt
     8881 ttttcatatt tccttaggta agacttccgc cccttttcgc ttttttgatt aggggctttt
     8941 tttattttag catttgcaaa tttctaacgg aaattgaccg cttgtattcc ctcctttctg
     9001 ccttactgtg ctacaatcag cccaattttt tctaacaaat tgaacgaatg agcgataaat
     9061 tctctttttt cttttacgat tatgaaagtt tcggcgtgag tccggcgtta gatcgtccgg
     9121 cacaatttgc cggtattcga accgatgcgg attttaatat tatcggtgaa ccggtaatgt
     9181 ttttttgtaa gcaaacgccg gattatttac ccagccccga agcggtgatg gttaccggga
     9241 ttacaccgca acaatgtaac gctgaaggtg tatctgagcc ggaatttgca gcccgaattc
     9301 acgctgaatt tagccgagcg aatacttgta ctatcggtta taacaatatt cgttatgatg
     9361 atgagatgac ccgttatacc ttcttccgca atttttacga tccttacgaa tatagctgga
     9421 aaaacggaaa ttctcgttgg gacttgttag atttagtccg tgcctgttat gcgttaagac
     9481 ctgatggtat tgaatggcca acagatgaaa ccggtatgcc aagttttaaa ttggaaaacc
     9541 tcaccaaagc caatggcatt gcccatgaaa atgcacacga tgcgatgtct gatgtgtatg
     9601 ccaccatcgc aatggcaaaa ttaattaagc aaaaacagcc aaagttgttc gattttttct
     9661 ttaatttacg cagtaaaaaa gaagtagaga agttaattga cactggtgaa atgacaccgc
     9721 ttgtgcacgt ttccggtatg ctgggcaact atcgaggaaa taccgcttgg gttgtgccac
     9781 tggcttggca ctcaactaat caaaatgccg taattgtgtg tgatttatcg ggcgatatga
     9841 atggcttatt gactgaaaat gcagaggttt tacgtcagcg tttatacacc aaacgagatg
     9901 aattagccga aaatgagtta cctgtgccgt taaaattagt gcatattaat aaatgcccga
     9961 ttttagcacc ggcaaaaacc ttactgcctg aaaatgcaga acgtttaggc atagacagag
    10021 ctttatgttt ggaaaatttg aaaactttaa aagcacagaa atcgctgatt cgggaaaaag
    10081 tgattgaaat ttttaatgaa gaacgcacgt ttgagccttc gaccaatgta gaaaccactt
    10141 tgtatgacgg ctttttctcg cctgcggata aaaataatat ggcgatttta cgcacgctac
    10201 cgcctgaaga tttagccaac cacggcttga aatttgaaga ccctcgagta gaggcgttac
    10261 tattccatta ccgagcaagg cactatccac aaacactcag tcgagccgag cagatcaaat
    10321 ggcagaaaca ttgcaaccag caaattgagg caaaagcagc gcagttcgcc caatcgattg
    10381 acgacttgtt ccaacaacat cacgacaacc cggaaaaggt aaaattatta gaaaatttga
    10441 ccgcttacgc cgagcagatt tcgcaacaac aagcggtcat ttatcgtcaa aatgttgcaa
    10501 aagatgaaaa attgctgagc gagcttaaca gagtagcgga acagccccta gataaaaccg
    10561 aaaagctcaa gatgttaaaa gagttgatta aatgacaatg gataatttac cgctagaaca
    10621 gcacccgttt gaccctattt tacctgaaca agcaacggtg gtaatggtcg gcacttttcc
    10681 acctacatcg gaaaagcgtt gtatggaatt tcattacccg aattttcaaa atgatatgtg
    10741 gcgaattatg ggcaatattt tttatgctga ccctaactat tttcgagttg gtgaagaaaa
    10801 acgctttgat ccgattcgga ttgaggcgtt tttgcgagaa aagggcgttg cgctctgttc
    10861 ttcggcaaaa acagcgattc gtttaaaagg aaacgcttca gataaagatt taaaaattgt
    10921 tgatcctatc gatatggacg aactgttgct caaattaccc aaactgaaat ggctatttac
    10981 cacaggtggt ttggcaaccg atacgttgct cggtttattg ccggaaaaac acaaagctcc
    11041 gaaaaccaac gaatgggtgg tctatcctta ttccgccaca agagaacttt atttatatcg
    11101 cctgccttcg acgtcgaggg cttatccact cagcttagcc aacaaaaccg aagcctatcg
    11161 ccaatttttc aggactgccg gcttaattta aggataaata aaatgaaata tgatttacac
    11221 gcccacagta ccgcctctga tggcgtactt tctcccactg aattggtaca acgtgcggta
    11281 gagcaagggg taacaatgct agctttaact gatcacgata cgatttcggg cattcaagaa
    11341 gcgaaaaatt ttgcccaaaa tcaaccgctt gagcttatct ctggggtgga aatttcgatt
    11401 ttatggcaag aaaaaagtat tcatcttgcg gcgttgaata ttgatgaaaa caacgaggag
    11461 ctggtgaagt ttttggataa ccaagcccaa ttaagggaag agagagcggt cgaaattggt
    11521 gaaaaattag caaaagtcgg gattgcaaat gcctatgagg gggcaaaagc gttggcaaca
    11581 ggggaagtaa ctcgggcaca ttatgggcgt tttttgtatg aacaaggcta tgtccgcaat
    11641 attgaacacg cctttaagcg ttatctggga atggggaaac ctgcctatgt gaaaccgaga
    11701 tggagtagtt tagaagacgc ggtgaatgtt acccacacct caggcggtgt gatttcgatt
    11761 gctcacccgc tacgctataa aatgactgct cgttggattc gccgtttaat cgcagatttc
    11821 aaacaagccg gaggcgatgg cattgaagta tcaggctgcg gacaaacacc tgatcaacgg
    11881 caattacttg cccgttgggc aaaagagttt gatttatatg gctcggtcgg ttctgatttc
    11941 cactacccaa ctggctggat tgagctcggt aaaagtttgg aattacccca agaatgtaaa
    12001 ccgatttgga cgttatttta gtgttatcgg ggcaaataat ttgccccgat tttttactat
    12061 ttcactttaa cttgcttaaa gtctgccatt accacaccta gttcggaaac cagttcactg
    12121 atttttgcca tatccggctt ttcagcgttc agattaattc gcattaaacc aagaatacgc
    12181 tcaaatttgc cataatgggg aagactgatt tcccgtactg ctttttcctg ttttacccaa
    12241 ttcttaccaa actgataagc cgcccatttg attttggcga tttcttgagt tggcacggtt
    12301 tgagcaagtt ctgcataaag cggcgtcatt tttgccacaa aatcctgatg tttttcagca
    12361 taaccgctag ggttttgttc tttttcaaac gcatagagtt tttagaaagg ctctctaagt
    12421 tttcagcatt gggtgtttca atcgcttttt tcagagcggt ctgtacttca actccggcga
    12481 gggaatcgtg ctggctaatc tgctcaaaat cgtgctgtaa agcggtcaaa ttttggctgg
    12541 attttgcaaa ttcccctttt ttactctctg ccattgcatc ggaaagctga acaaataagg
    12601 ggctgacatt cactttggca agcaatcctg tactcgaaaa gagtaacgga attagcacta
    12661 atgcttttaa tttcatttcc ttttccctaa attaaatcaa acaacgcttt gccaaggtag
    12721 tcattttcat ctttcacacc ggcaaaacag gcaaataaac cactgccgat atgagtgatg
    12781 tattcattca ttttatccac attgccgaga gcgttctgga ttttgataaa ttgctccgga
    12841 ctttgttgga aagagacaaa caacaaccct gaatcaaatt gccctttatc atcaataccg
    12901 cttgaatagg agaatgaacg gcgtaggatt ttcagccccg ttttattggc aagatgagcg
    12961 tgtgaaactt ccggaattac tgcattgcct ttttcgtctt ttttggctaa atctaattta
    13021 tcaaattcgt gctgatgccc gattccggct ccggaatcac ggtgacgacc gaaggtttct
    13081 tcttgggatt ggagatgggt gcgatcccaa gtttccaaga acattttaac acggcgaacg
    13141 gctaaataag aaccgccttt gagccagccc tcttgttgca cccataccgt attttcctga
    13201 tcttttaaac tttctgcgtt ggcagtgccg tctttaaaac cgaataagtt acgaggtgtg
    13261 tcttgattgg caaaggagtt aaaccccatt tgcgaccatt tcattttgat ttcaccacgg
    13321 gcaacacgca ccaaattacg cacagcgtgg aaagccactt gcggatcgtc tgcacaggct
    13381 tgaatgcaaa tatcgccacc ggtgtattct gcttgtagtt gatcacgagg gaaatgcggt
    13441 aaatcattca gttctttcgg cttatgtttt tcaatgccga gctttgtaaa gaaattggca
    13501 ctgacgccaa aagtaagagt gagattctgt gccgaaaggc tatctgcctc accggtatcc
    13561 gccggtggaa cataagcatt agcactataa ggtttcacat ttttgccaag cgtgaggtta
    13621 cggctatatt ccgtccagtt ttgaaacaat gtttttactt tggcaatgtc agtggtgtct
    13681 aaatccagca ctaaaaagta gatatgtttt tgtgcagggc taacaatacc agcttgatgt
    13741 ttgccgtaaa agtcgtattg attttgagat ttttcagata tttgtcgtga ttccaaagcg
    13801 aaagcaggag cagacaataa gcctgctcct actaatgcgg tatgttttaa aaaatcacgg
    13861 cgagaagtgg tttctgccat catttttgct ccactattta tttaaaagta cgccaagttg
    13921 agctaacggc tcgcctaatt ggtttacagc ctctgctaac gctttaatat ccgcttttga
    13981 cagtttgtta taaggcacat aatcataacc ggttttagat ttattgtgtt ttgctaacag
    14041 cgcattgaca gccgcaaaac gagagccgat ttctgttgag agtttggcat caatttgctc
    14101 taattgcgtt ttaaaaatct catagatttt ttctgcacct tcaatattgg ctttaaaatc
    14161 gtaaaggtcg gttttagaga aaatttcttc ttcaccggtt actttagtag tagaaacttc
    14221 gtttaataaa tctaccgcac cggtaatcat cggctcaggg gtaacttctg cagtgggaat
    14281 tttcgcacgc agctctttta catcttttaa taattgttct gccgttgctt ttgtgccttt
    14341 agtggtgttt ttctgccaca atactttctc gattttatgg aaacctgacc aatctttctc
    14401 ggttttacct tcttcggcta aatctgccag acgggcatca atacgagggt ctaaatcgcc
    14461 aaaactttct gcaatcggtt cagaacgttc aaaatacatt cttgcaagcg ggtaaatttt
    14521 cttcgctttt tgcacatcgc ctttgtttaa gtagccgaca aatttttccg tatcggtaac
    14581 cagttggtca atctgttcta ccacaaattg tttataagcc tcggtttcct tagttaagtc
    14641 taaagctgcc gcttgagtag ccacaaaaaa gccagaaagt gcaaaagtgc aaaagcaagt
    14701 ttggttaaac gcatagaaat ttccttttaa taaaaatatt gcgacataat atccttattg
    14761 cgaattattc gcaaaaaata atgctgattt tgtgatgtaa atcacatttt gttttgcaaa
    14821 ttattgctaa aaatagaccg cttgcttatc taaattagag ccattacaat ctgctcaata
    14881 atcaataaga taggaatagt aatgagtaga acaaccagcg taactttagc tgagccatta
    14941 agccaatttg tgaaccaaat ggttgaaagt gggcgttatg gttcgaccaa cgaggtcatc
    15001 agtgccgcat taaaaatatt ggaagcacaa gaacagcaac taattcagct aagagcctta
    15061 attgatgaag gcttagaaag cggtgtttct gaggaaaccg ttcaatctat tatcagcaag
    15121 gcaaaacgta atgtataaac tttctgttag ggcagagcga gatttagcgt tactttattc
    15181 gccctttgtt acgctgtcat taccaccgct cacattctat ttattataaa ccaatcccaa
    15241 aaggtatctt tattgttagg gtgttagatc caagaatgga tcaatataag cagttacaat
    15301 aaatttgcaa aaatcccgat aaaaacgacc gcttgcttgt gctaaaataa accgattttt
    15361 taagacagga ttttctatga gcaagcaagg caaacccttt atcctccatt ctcctttcaa
    15421 gccctccggc gaccaaccaa gtgcgattgc caaattgacc gaaggcttaa atgacggctt
    15481 ggcacatcaa accttacttg gcgtaaccgg ctcggggaaa acctttacca ttgctaatgt
    15541 gattgccaag ctcaatcgcc cggcgatggt gcttgccccg aataaaaccc ttgccgccca
    15601 gctttatgcc gagatgaaag cgttctttcc ggaaaatgcg gtggagtatt tcgtctctta
    15661 ctatgattac taccagcccg aagcctatgt gccggcaagc gataccttta tcgagaaaga
    15721 tgcctctatc aatgagcaga tcgagcaaat gcgactttcc gcaaccaaat cctttttgga
    15781 acgccgagat acgattgtag tggcgtccgt ttctgccatt tacggcttgg gtgatgtgga
    15841 cgcttatatg cagatgatgt tgcatttgca agtgggggcg atgattgggc agcgtgaaat
    15901 tctctctcgc cttgccgaat tgcaatatac tcgcaacgat caggcgttcc aacgttcgac
    15961 tttccgagtg cggggcgatg tgattgatat ttaccctgcc gaaagcgatg aagtagcgtt
    16021 aagggtagag ctgtttgacg atgaaatcga aaatctgtcg ctgtttgatc cgcttacagg
    16081 gcatagcttg ggcaaggtgc ctcgctatac catttacccg aaaactcact atgtgacccc
    16141 tcgggaacgg attttggagg caatcgagca aattaaggtc gagcttgccg accgtcgcac
    16201 ctatttcatc aaagagaata aattgctgga agagcagcgg atcgcccaac gtacgcagtt
    16261 tgatattgag atgatgaacg agctgggcta ctgttcgggc attgaaaact actcacgcta
    16321 tctctcgggc agaaaagagg gcgaagcccc tccgaccctg tttgattata tgccggcgga
    16381 cggtattttg gtgattgatg aaagccacgt tactgtgcca caaattggcg gaatgtatcg
    16441 aggcgaccga gcgagaaaag aaacattggt gcaatacggt ttccgtctgc cgtctgcact
    16501 ggataaccgc ccgttgagat ttgaagagtt tgaacgtctt tcaccacaga cgatttacgt
    16561 ttctgccaca ccgggggcgt atgaattgga gaaaaatccc gatgtggtgg atcaagtagt
    16621 tcgtccaacc ggcttgctcg atccgattat cgaagttcgc cccgttgcta cgcaggtgga
    16681 cgatttactg tctgaaattc acaaacgagt ggcggtggac gaacgggtgc tggtgacaac
    16741 actcaccaaa aaaatggcgg aagatctcac cgattatttg gacgaacatg gcgtacgagt
    16801 tcgttatcta catagcgaca ttgacacggt ggaacgggtc gaaattatcc acgatttacg
    16861 aatgggaatg tttgatgtgc tggtggggat caacttattg cgtgagggct tagatatgcc
    16921 cgaagtgtcg ctggttgcca ttcttgatgc ggataaagag ggatttttac gttccgaacg
    16981 ctcgttaatt cagaccatcg gacgtgccgc ccgaaacctc aacggaaaag cgattttata
    17041 cggcgaccgc attaccaact caatgcaaaa agcaattact gagaccgaac gccgccgtga
    17101 aaagcagatg aaatacaacg aagaacacgg catcacgcca caagcgttga acaaaaaagt
    17161 gggtgaattg ctcgacatcg gacaatccga caagccaaaa cggggcaaac aagcggtcaa
    17221 aaaagccgaa aattctgcaa ccgactacaa gccgaaatcc cgtaaagaac tggaaaaaga
    17281 gcttaaaacg ctggaacaac aaatgcgtga ttttgcgaaa gatctggaat ttgaaaaagc
    17341 ggctgcggta agggataagt tgcagcattt aaaggcgtat ttgttggagg tttaaatatg
    17401 atttctcgtt cattattttc aaaattaatc ttatttgcca aaattgttat tttctctcaa
    17461 cttgttttta tggtggttat ctggattgcc caccatatta tgcgggagta cagtaatccg
    17521 tttgaacgat ttggtaccct gttcaataat gtgtttttga cttttattat tccgatgatg
    17581 gtaagtagtg cggttattgt ttataaaggt tatacccaga aaaatgaaga taaagtgttt
    17641 tggatttata tggggttctt tttaatttgg attttgggat ttatttattt tgagccggca
    17701 gtttatgata aatcactgaa gatttcaggt gcaggatttg gggctatgct ctctattatc
    17761 atttgctcga agttattgcc taaggaaaca aataaagagc agctctaaga ttcttgtgaa
    17821 gaaatctgtt ttctcggagg aagaaaatgc tttttgatag ccatatccac cctgaggggt
    17881 tttcagatca agatgatgac cggaagtagc cattatgttg aattattttg caaattttag
    17941 cactaagtcg accgcttgtt tggtacgagc gaggaagctc gcaccatcgg gtaaacagat
    18001 ttgcaaaaaa gttacaaaat ccgaccgctt acttgagctt attgattgcc caatctaatc
    18061 ccgaatggaa atcttccgtt aggctcggtc tgagttgttc cagtagttca attaagccgt
    18121 ttttatcggt gtgagtgagg ttgatatgcc caacttttct accagctcgg acttctttgc
    18181 cataccaatg tagttggcta aatgggaggc ttagccactg cttgttatgt tcaatgccta
    18241 ttaaattaac catcacgctt ggggcaattt ggtcgagtgc tggcgtaggt agatctaata
    18301 atgcccgtaa atgtaactca aattggctaa tggcacagcc gagttgtgtc cagtgtccgc
    18361 tgttatgcac tcgaggggca agctcgttga tgagtagctt gtcgcccaca acaaagcatt
    18421 ccattgccat tacgccgaca tactctaatt tttgcattac cgtagcgagc atctgttcgg
    18481 cttgctgctg gtagagggct tggttcggta aattcacatc ggagacggag taacgtagaa
    18541 tgccgttttg ttgtaaattg tgagaaatag ggtagaaacg ggttgagccg tcacggaatc
    18601 tcgccccaac aatggaaatt tccccctcaa acgggataaa tttttcggca atcacttcgc
    18661 caaataattc aggtgtaatt tgatgaatcg agtcttgcgt tacaatccat tgcccacgtc
    18721 cgtcatatcc tccggttcgg cgtttaacca ctactttttc gccaatatgc tgaaaaatat
    18781 cttgccaatg ttcggcattt tctagcagtt gccattttga agtcgcaaga tggagttcat
    18841 caagtagtga tttttgcgta aaacgatcgg ctaacttccc aaaaacattc aggttcacaa
    18901 aattcgggtg gttaccgagt aattgcgtta aaggcgtatc tgcccaacgt tcgatttctg
    18961 cggtaataat gctgtttggc tcaatatcaa acacaggggc atcgaaagcc agcggtttga
    19021 cttcaatatc aagtggtgct ccggcgtagc gtagcattct cccgagctgg ccgttgccta
    19081 atacatacac aggtgggtag attgcacttt tttgcatcgt ggtattctca atgggttaga
    19141 aatagtctga tagtggtttg tctaaggttt ggctgagtaa gaccataagt ttaatgcgag
    19201 ctttttgccc acttaagcct ttggtaaaaa taatgccttt ttgctttaac tgttttccac
    19261 cgcctacata atcatagaca tcttgggtaa taccattgaa tgcccgagaa acaattacaa
    19321 ttggaatatt ggcattcact aaagcctcaa taccagccag acaactaggg ggtaaattac
    19381 ctgcacccaa tgcctcaatc acaacaccat cgcatttgct tttcgctaat tgttccagca
    19441 gaaaactatc cattccggcg tatgctttca gtagttgcac gttagcttta gttacttgtt
    19501 gaattggata acgttcgtaa gtggtcaatt tttggaaaaa aatgacagat tctttcgtta
    19561 ctaagccaca aggcccaaag gttggggttt ggaaagtcgc cacattagtg gtgtgggttt
    19621 tggtcacaaa tttagcattg tggatttcat cattcatcac cactaacacg cctttatctc
    19681 ggctttcttc atttaacgcc actaaaatcg cactttgtag attgattaag ccatcagcac
    19741 ccagttcgtt actggaacgc attgctccgg taattactac cggtatattt acgctgaggg
    19801 ctaaatccag aaaataggag gtttcttcca aggtatctgt gccgtgggtg attactacgc
    19861 catcgacatt ctcctcattc actgcctttt caatccgcat ttttaactgt tgccaatgct
    19921 cgatattgat atgcggagag ggaatattaa ataacgattc ttgcgccaat tttgctgggt
    19981 ggtttaaacg ttctaaggca gccaagagag gattttcatt ggaaggggag accttaccgt
    20041 cttccccttc tttcattgaa atagtaccac cagtgtggag gattaataat tttttagaca
    20101 tcttttatac aatagttatt caacacgagg atcaggatta tctaatacca tctgagtttg
    20161 ggtttgacgg aaaatacgca gtttctctgc aatatcaggg ttaaaggctg ctaaaatttg
    20221 agcggctaat aagcctgcat ttgctgcacc tgccggcccg attgcgagcg taccgaccgg
    20281 aatacctttc ggcatttgca caatcgaata gaggctatct acaccactta acattgagct
    20341 ttttaccggc acacctaaca ccggcacaat ggttttagca gcgatcattc cgggcaagtg
    20401 agctgcaccg ccggctccgg caataatcac tttatagccg ttagtctctg cagtttcagc
    20461 aaaagaaaag agtttgtccg gtgtgcggtg tgctgagacg acttcaacgt gatagctcaa
    20521 accgaactgg tctaatattt gggttgcttc agacattgta gcccaatcac tcttagatcc
    20581 cattacgatc gcaatttcag ctttatttgg cattttaaat ccttatgata ctaatgtaaa
    20641 acagtgtaat catagcatac aaagcaaacg tttgcgtagc tatttaagaa gtgaaaagca
    20701 atttttaggg ctgttatctg ctggttaaaa tatgatataa tcgacaacca ttttattttt
    20761 tataaattta atcatcggag atataaatga cgagtagtat aaacaaacgt tcggtaatga
    20821 ctcttttttc ggataaaaat gatatttaca gccaccaagt gcgtattgtg ttagcagaaa
    20881 aaggggtgcc ttatgaaata gagaacgtta tgctaggcag tatttctgaa gatttattag
    20941 aattgaatcc ttacggtaat attcctacat tggttgatcg tgaattagtg ctgtttaacc
    21001 ctcgtattat tatggaatat ttagatgagc gtttccctca cccaccatta atgccggttt
    21061 accctgtttc tcgtggtcag tgccgtttaa atatgtatcg tattgaacaa gattggtatt
    21121 cgcaaattga tattgtgaat aaagatcctg aatcagcgga aggcaagaaa gcgttagcac
    21181 agcttaaaga agatgtattg gcattagcgc ctatttttgc cgctaaacct tattttatga
    21241 gcgatgattt cagcttggtt gattgctata ttgcaccgtt attatggcgt atgcaaatct
    21301 taggcgttaa attcagcggt gcaacggcaa aaccaattaa tgcgtatatg acccgtgtat
    21361 tccaacgtga tagttttatc cagtctgttg gcggcgaagc gccaaaacat ttaatggacg
    21421 ataaagacta atgaaaccat taagacctta tctttataat gcctactata actggattat
    21481 tgatagcgat aacacgcctt acttattagt gaatgcagaa tttccagacg tagatgtgcc
    21541 ggtagagttt gtcaaagaag ggaagattat tttaaatatt tcgcctcgtt ccatcgggca
    21601 gtatattgtg gctgatgaat acattagctt tagcgctcgt tttcagggaa tgttaagaga
    21661 tatttatatt ccttttgggg caatggtggc gatttatgcg caagaaaccg gtgatggtat
    21721 tatgttccaa gaagaagcct actacactga agaggcttat caagctcgag ttagagcagt
    21781 agagcagcct aaaaaaatca aggcgaagaa aacatctacc ttaaagttgg tgaaataaga
    21841 gatctatttc atcaaaacac attacaagcg gttaaatttt tctgattatt tgcaaatatc
    21901 agtcaaaatt taaccgcttg tttgttttgt gacggaaata atcaaattcc acttgcactc
    21961 cgactaaaaa ttgcttatct ttgttttgtg tttgtactgt tgtgatagta cagtaatgat
    22021 cttaaggaga gaaaatgaaa ttccataaaa ccttattagt gactttgtta agttcacttt
    22081 ctgtagcggc attagctcaa gataaaattc aaaatgtagc aattacagcg attgtggaac
    22141 accctgcatt agattcaatt cgtaaaggtg tgattgaaga attagcccga gaagggtttg
    22201 ttgatggtaa aaacattaaa atcgactatc agtctgcaca gggtagtact gcaacagcag
    22261 cacaaattgc gcgtaaattt gttggggata aagcagatat tattatcccg atcaccacac
    22321 cttcggcaca acctgttgtt gctgcaacac gttctatccc aattgtgttt tcaggcgtga
    22381 cagacccggt tgctgcaaaa ttagtaaaat cgtgggagcc aagtggcact aacgtgacgg
    22441 ggatttcaga ccacaaagcg atggctccac aagtgaaatt aattcaaaca ttagtaccgg
    22501 atttgaaagc tgttggttat gtgtatagtg caggtgaagt taattctgcg attgtgttag
    22561 aagagttaaa acaagaggct caaaaacagg gctttactat agtgccggtt gctgttcaac
    22621 gcagtgccga tattggcact gctgctcgca gcctaaacgg aaaagtgcag gctatttata
    22681 tttctgaaga taatgcagtt gtttcggctt atgaagcctt acataaagcg gctttagaag
    22741 caaaaattcc ggtgattgct gctgaccgtg atacagtaca acgtggtgca gtggcagctt
    22801 atgcggttaa tcaatatgat attggtgtgg caaccggtaa agttgctgct cgtgtattaa
    22861 aaggggaaaa agcaggtaca attccaatcc aagaagtcag caaattagag ctttcaatta
    22921 atactaaaac ggcaaaagaa ttgggcatta ctataccaga ggtattaatc aaagaagcta
    22981 aacaaacttt ttagtgtaaa aaataaaaat ttgttttatt tgtcataatc ttgtagagta
    23041 aaaattcatt tcaactcagc taaggagaat attatgggat ggattgctgc aattattgtt
    23101 ggcgctataa ttggttggat agcttcggct gtaatgaaaa gtgaaggcgg actttgcaaa
    23161 aatattatta ttggtatttt gggttcgtca cttggacgct gggtatttgg tgatgtatta
    23221 ggtattggtt ccgcttatag tgccggagac tttaatatag tcggtatctt ttttggtgta
    23281 ttaggggcag ctcttttgat tttcattttg agaaaattaa gcataattaa ctaatttcgt
    23341 atttcagaaa ggaagcagtt gttttataac tgcttctttt ttgttaaata tactcttttt
    23401 gctcttgcat cagttgtgtg aaaaaatcaa ttaggattcg cactttagga gagagataac
    23461 gacggtttgg atagagtaag ctgatttgta aaggttcctg tgtcaaaaaa ggcataatag
    23521 gaatcaactc tccgtttttt agctcgtgtt ttattaaaaa ctttggaatg ttaatgatgc
    23581 ccaaaccagc ttttgccatt tgtactaacg cataaccatt gttactgtaa attttacctt
    23641 gtggtttaat ttgcattttt tgtccttgtt gagaaaattg ccattgagga tggtattcat
    23701 agagtaggca gtctcgttcc actaatgctt ctaagccttt aggttcgcca aatcgagcta
    23761 aataatctgg agaagcaact aaaaccaaat gggaatctgc aatttttttc gctacaatgg
    23821 aactatctgc aaggctacca atacgcagca ccaaatcaaa gccttctgca atcacatcta
    23881 cccgacggtc actaaattca atatgaaggg ctaaattagg gtaatcttcc ataaatttcc
    23941 caaggtaagg ggcaatgaag cgagagccaa aatccattgg tacagacatt gttattttcc
    24001 cttgtagcgt tgagttaata ttacttacgc tggcatcggc ctcttttagt tcatttaaaa
    24061 taggcaagca ttgctgatag tagagcaacc ctgcctcagt tggcgtaatt tttcgagtgg
    24121 ttcgttgtag taaacgcaca ttgagatgtt cttctaactg agccaccaat ttacttgcca
    24181 tgggtaacga aatttgagct tgttgtgctg cttgagtgaa actttgggtt tcaattactt
    24241 tacaaaataa actgattgcg tttagtttat ccattttctc tcttctttat attgtaattt
    24301 gtgttaaggc ttgctatcgt aaaaatagtg tctaaaaaaa tcaacttaaa aagaaataat
    24361 ttcaaacaat ttaaaataat tattaaaaat taggtaataa attatgggaa aatcactagt
    24421 tattgtggag tctccggcta aggcaaaaaa aattaaccaa tatcttggta gtaattatgt
    24481 ggtgaaatcg agtgtggggc atattcgtga tttaccgaaa agtggtagtg atgaaaaaac
    24541 ggaaaaagcg aaaccgattt caaccaaagg gctgaccgct gccgaaaaag ctaaaatcaa
    24601 agcagaaaaa gagcgtgttg cattggttaa acgtatgggt atcgacccct ataatggctg
    24661 gaaagctaac tatcagattt tgccggataa agagaaagtg gtttccgagc taaaatcgtt
    24721 ggcaaagaaa gcagatcata tctatctggc aaccgacttg gatagagaag gggaggcgat
    24781 tgcgtggcat ttgcgtgaaa tcattggtgg tgatgacagc cgttttagcc gagtggtatt
    24841 taatgaaatc accaaagatg cgatcaaaaa ggcttttgac gatccgcaac cgctcaatat
    24901 tgaccgtgta aattcccagc aaacccgccg ctttttagac cgtgtagtgg gctttatggt
    24961 gtcgccatta ttatggaaaa aagtagctcg tggtttatcg gcagggcgtg tgcaatcggt
    25021 tgccgtaaaa ttactggttg agcgtgagcg tgaaatcaag gcgttccaaa gcgaggagtt
    25081 ttggactatt cttgccaata cgcaaattaa tcgtaaaaaa ttaccgcttg aattaactac
    25141 ttataaaggt aaaaaattct cggcaagcaa tgaggctgaa gcaaatgttg cagtgcgtgc
    25201 tttggagcag agcgatttta ttgtttctaa tattgaagcc aaagaaacca gctctcgagc
    25261 tgctgcacca tttattacct catcgttaca acgtgccgct agcactcgtt taggttttgg
    25321 ggttaaaaag acgatgatgt tagcccaacg gttatatgaa gcgggttaca tcacctatat
    25381 gcgtactgat tcaaccaacc ttagccgtga agcattagca atggctcgag gttatattca
    25441 ggataatttc ggggcgaatt atttgccgga aaaagcaaat gtgtatcgca gtaaagataa
    25501 tgcccaagaa gctcacgaag ccattcgccc gtcggatgtg aatgtcaaaa tggcggattt
    25561 aaaaggaatg gataaagatg ccgagcgttt atacgattta atttggcgtc gtttcttggc
    25621 gtgtcaaatg ttgcctgctc gttatgattc taccgcagtc acagtgtctg ccggagacta
    25681 tgaactcaaa gcaaacgggc gtgtactgcg ttttgacggc tggacgaaag tactgccggt
    25741 gcaaggcaaa aatccggaag atcaggaatt accggcggtt gaactgcatc aaaaattaac
    25801 gcttgatgaa attgtgccaa gtcagcattt tactaaaccg cctgcacgtt ttaatgaggc
    25861 gtctttggtt gctgagttag aagagcgaaa aattggccgc ccttcaacct atgcttcaat
    25921 tatttcgacg attcaagaac gtggctatgt tcgcaccgaa aacaagcgtt tttatgtgga
    25981 aaaaatcggt gaagtagtga cggatcgcct caacgaatca ttcaaagatt taatgaatta
    26041 tgatttcact gccaatatgg aagaggtgct cgaccaaatt gcagaggggt ctaaaaattg
    26101 gaaagaagag ttgaatactt tctttaaaca tttctctgaa gagttgagcc aagcagaatt
    26161 agatgaactt gaaggcggaa tgaaaccaaa cagccttgtg ccaaccgata ttgattgccc
    26221 gacttgtgga cgaaaaatgg caattcgcac cgcttccaca ggggtatttt taggttgcac
    26281 cggctatgct ttaccgccaa aagagcgttg caaaacgaca atgaatttaa ttccagaggc
    26341 ggaatttttc aatgtgttag attcggattc tgaaaccaaa gccctaatgg ctcgcaagcg
    26401 ttgcccgaaa tgcgattcgg caatggatag ttatgtgatt gatgctgaac gtaaattaca
    26461 cgtttgtggt aataatccaa attgtgatgg tcatattatt gagcaaggtt ccttcaaaat
    26521 taaaggctat gacggacctg tagtggaatg cgataaatgc ggttcagata tgcacttaaa
    26581 actgggtcgt ttcggcaaat atatgggctg cacaagctgc gataacaccc gtaaaattct
    26641 gaaaaacggg gaagttgctc cgccaaaaga agatcctatt gcttttcctg aattaaaatg
    26701 tgaaaaagcc gatgcctatt ttgtattaag agacggagca agtggggtgt ttatgtcagc
    26761 tcataacttc ccgaaagtgc gtgaaagccg tgcaccaaaa gtggtagagt tagctcaata
    26821 tcgtgaacgt ttgccggaga aattgcagta tcttgccgat gctccgcagc aagatccgga
    26881 aggaaacgag gcaattatcc gttttagtcg taaagagaaa cgccaatatg tgacttctga
    26941 gaaaaacggc aaagccacca aatggattgt tgattatcta gacggtaaat gggttgagcg
    27001 taagaaataa agcttaaaag acaagcggta aaattttcta aaaattttac cgcttgcttt
    27061 tagatgttct gagcgagtag ttcatcaatt gctttactta atttattgcg atcgtgtcgg
    27121 taataaacgt cattcgcaga taagtttttt cgcaagattt gaatatgttc gggaagttca
    27181 gaaccggcat catcagtcgt aattaccgca ttaattctag cctgtccgat acagttctcc
    27241 atccattcaa ttcgctgatt aagtgatagt tgcccagctg ggccatgttc ttgtccgata
    27301 ttgtcaataa atactactcg ggctttgctt tgagcaatag agtttgctat gcctgccacc
    27361 agcaaattcg gcataatact ggtaaaaaag ctacctgggc ctagcagtat taactcagca
    27421 ctttgaatag ctgaaatggc ttctggtgta gcaacaacca tagtatctaa cgctaaatgt
    27481 tgtggtgttt ctgctaaaga atcaatttgc acttcaccaa atactgattc gcctgaatgc
    27541 aactgtgcaa ttaaatgcac cggtatttca gacattggga taagttgcga tcttacgtgc
    27601 aataattctc gcaccaaatt aatcccttct agcggtcgga tttgcatatt ttcaagggcg
    27661 gtgagaatta aattgcctag attatgtcca gcgagttcgc ctgtgccagc aaaacgatac
    27721 tcaaacaacc gagaagctat cgttggttta acgataattt gatttaaaca gttgcgtaaa
    27781 tctccccaag caatcacccc ttgttgtgaa cgtattctac cggttgagcc tccattatcg
    27841 gtagtggcaa caatgccggt aagccgttcc tttaaaaaag agagcgcgga gagcaatcga
    27901 cctaagccgt ggcccccacc tagtgcaaca actgcattga gttggtttaa atagtgatgt
    27961 cgggtaggtt taaaaggaat aatatctgta ttttccatct tgggatttcg tttatttttc
    28021 taaaataatg gcatctgact gggctgaagg caatgcttgt aatacagctt taaccaaagt
    28081 cgctaaagga atcgcaaaaa acactcccca aaagccccat aaaccaccaa agatgagtac
    28141 ggcaataata attgtcagag ggtgtagatt tactgcttca gaaaataaaa agggtacgag
    28201 taaatttccg tctagcaact gactaataat aaatgcgagc attaaatagt agaaatccgg
    28261 cgataacccg aactggaata gagcaattaa cattaccgga atgctgacta aaaccgcacc
    28321 gatgtaggga actaacactg aaatccctac cgctacagaa agtagtaacg gatagcgtaa
    28381 atcaaaaaag aggaaaataa tataagtgac aaccccaaca attagaattt ctaaaaattt
    28441 acctcgaata tagttggcaa tttgttgttg catttcaaac catactcgtg ttgcaagtcg
    28501 acggttttgc ggtaatactt tactaaaaga acgcattaaa acgattttat ctttcagtaa
    28561 gaaaaagacc atgagtggga ctaagaaggt gtaaatgcct aagccaacta agctgatgat
    28621 agagttaatc gagagtgtta gaagtgattc tcccatactc aaaatattac ttttagcggt
    28681 attcacaatg gaatctaggg tcgcataatc tactaattca gggtaatgct ccggtagggc
    28741 ttgtaaccaa gcattgagca gattaaacat cgaaggtaaa tcttgaataa aggtaactgc
    28801 ttgattccaa aggctgggta gtagtactac gcctaaaaaa gataataaag cgatgaaacc
    28861 tcctagtact agaatgacac tcaaagttcg aggtaatttg agtttgctcg acaaaaaacg
    28921 gattggccat tccaataaat aggcaaacac aagtgcaacc agaaggggca taagcagatc
    28981 gctaaaaaaa tagataatac cgaaaccgat caatagaata ctaaacagca caactatttg
    29041 cgggtcggta aatttttttc gataccaatc ttgcaacatt tgaaacatat ggattgcctt
    29101 taaattatgc gatgaaaatt atttctggct acagactgca atgaacccta gctttttgtc
    29161 cgggtcatta aatagtttgt acattttatt aaaggtttcg cgattttctg gttttaatgc
    29221 attgccgata attttcatgg cgcctaaaac accttcatca tgaatcagac ctttagggga
    29281 aagtagagac atttctccgg aaaaggtatc aacattacgg aaaccacaac gttggaataa
    29341 tgatttccag tctgctttag caagtggaga gacagtgata ttgattgcat cacgcaactc
    29401 ggctaataaa gtatcggagt ctttatcttg gataacaata tcgtgcgtta ataaaaagcc
    29461 atttggtttt aatacacgaa aatattcacg tattgccttt tctttcgctt ctagaggaag
    29521 cattgtcagc atggcttcat taattacaat atcaaaactt tcgtcgtcaa atggcagttt
    29581 tgttgcgttg gcgcgctgta cttgaattaa atgctcaaca tggttttctt tgatattttt
    29641 acgtgctttt tcaagcgcat cttcgtctaa atcaatacca acaatttggc attcaaattg
    29701 ttgagctaat tggattgcag tagtccccat gttacaggca acttcgagca cttttttatt
    29761 tttatcaaaa tccccgtttg caattaacca atcagttgct aatttccccc cggggcgtaa
    29821 acgagttttg cctaaacgag ctaaaaaatg atgaccaact tcttcttttt tcataaaaac
    29881 ctctggattt gcaaaatacg ttaaatatat gaccgcttgt attgtgatct atgttcgtta
    29941 ttatactcaa ttttttcatt ttcttatata caacatcaac agattttgcc agaatacaac
    30001 ctcattttga tatgaggaaa atagaatgag taagcaaaag aatgattacc tccaccagcg
    30061 aggtcaaatt aaagaaagtg cagtaaaagc attagtgact gatccacttt ttagacaacg
    30121 tgtagaaaga aatcgtaaag ggaaagggag ctatcgcaga caagaaaaac acaaaaaaac
    30181 tatctatggg caaaaagaaa ccccatttaa aaatattcgg ttagagtctt tttaaatggg
    30241 gttttatttg tagcttattg tagttttata agcctgataa acactatggt ttactgaaat
    30301 aggccaacaa cggttctgga ttttgaatat aagaagaaag ttctttatgc tctgggtgac
    30361 ccatataggg aatttgccca agtaaaggcg cattaatttt ttgtgtcagt agttcaatta
    30421 attcgtgata atgccgtagc cctggattta ctctgtttgc gacccaactt actaatttta
    30481 caccacgctg caaaatttca ttcgcagtaa gtagtgcatg gttaacacaa ccttccttaa
    30541 ttcccaccac taaaacaacc ggcatattgt tttgcattac ccaatcagca aaatagtaat
    30601 ccttgttaat aggagttagc cagccatagg ttccttctac gacaacattt ggataggcat
    30661 tttctagtcg ttttaaatct gtgtttaatt tttccagttg aatatgatga actgcatcta
    30721 aagctgcaaa tacaggggta ctggaatgaa taaaagtata gctattaata tcacgatagc
    30781 taacattagt tggacagcta tctagtatgg ttaatacgtc tgaattatct tcagtagcat
    30841 aatcatattg agtaggttct gtgggtaatg aatcatcacc gccacaagca atgggtttat
    30901 agccaattac aggaaaacta tgttttgtaa gtgtctgtat gatggctcgg gtaaccacag
    30961 ttttccctac gttggtgtct gttccggtaa taaataatga gggcataaat gactcctttc
    31021 gaaaatatgg ctggtagttt aaccaaaaat agatcaattt attctgtctt tgatcaaatt
    31081 tccgtcataa attccttgtt ttattgctga acaggcaatt aatggactat tccaatcgta
    31141 ttggctggta actaaatcga tttttaggtt tgtttgtaac aaatttttat gcaatttttc
    31201 tgaaatttgc gtaaataacg gctcttttat tttgatcaat ggcgagttta gcataatttt
    31261 ttcactagaa aatatattaa ctaaattcat taatgcataa gctaaattat cggtaatatg
    31321 cgataaaata gctaatgcaa gcggttgatt ttcatcaatt ttttgacaaa gccagctgat
    31381 tttctgttcc tgacttttta aattattagg caaataacga tcaatgagtc tcacaatagc
    31441 tgggaacgtc acctgattga ctaatttata gcgatgaatt tcatctagtt cagggaatat
    31501 ttcatcactg agatggctaa atctaggcat aagcatatta tcaacattca tctttgattg
    31561 tttagacagt aaactaccac taagcaatac acttagattc acagtatcat ctaattgtag
    31621 aaaaatagca ttatcttggt taattaatga gccaaccgta gattctgcaa gcaaccacag
    31681 ctgaaaatgt tcacttaata aaataggaca atgaaacagc ggcgagagtt tagatgtaat
    31741 gttacagaat atatttttgt ttcccaattg agtaatactg tctttttctg cattaatttt
    31801 accgatcaca ctaatagata cagccaggag ctgactagta ttaacacaat atagttggcg
    31861 gaaatttgta ataaagttaa gaataaaatc atttagccta ggataatttt ctgctgagat
    31921 tgtataatct tgcttataaa tttctgcacc attgagttta caaagtgaaa tttcaatttt
    31981 atgagatgaa acagtaacac aaagtagttg ccaaaaaaaa ttagaaacag ctaatccaac
    32041 ggaggggcga cctctggata aagtagtctg aaccgtacgt tctaaaatga agtggttatc
    32101 tattagtatt ttagtcagat ttgttactga agctggggct aaccccgata gtttagctaa
    32161 atctgttctt gaaatgagtt caaattgctc aattaaatgg tatattttac ccaaatgaag
    32221 ggctttgttg tcagaaaaca tttaaaatcc ttatgttaga atttttagat gacaattatt
    32281 ttttgatatg aaaaaaataa caatcttttt ttgtttataa tgagagacag atcacataat
    32341 tattttttac gtttaaatat ttcaggaaaa gtatatggag tctttgattc actaccaatg
    32401 ggttgaaaca aatgagcaat tagaggccgt atgtgaacag gccagaaaaa caaaagtagt
    32461 tgccttagat acagagttta tccgtacacg tacctattat ccgatattgg gtttaattca
    32521 actctttgat ggccaacagg ttagccttat tgatccaaat acgatttctg acttctcgcc
    32581 ttttgtgtca ttattagccg ataaaaatat cataaaagta ttacatgcct gtagtgagga
    32641 tttagaagtt tttgagtatc aatttaagca attgccagag ccgatgttgg atactcaggt
    32701 gatggcagcc tttgccggca ttggtatttc gatggggttt gcaaaattgg tttcccacta
    32761 cttaaatatt gaactagaca aaggcgcttc ccgaaccgat tggcttgcca gaccgctaag
    32821 cgctgaacaa ttacaatatg cggcagctga tgtttggtat ttattgccag tttatgagaa
    32881 attggcacaa gcattaacaa aaagcacttg gcaaagtgct gtagcagagg agtgtgtcgc
    32941 tttgttgaag aaagcgaaac agcctatcaa taaggaaaaa gcctataaaa atattgccaa
    33001 tgcttggcga ttgaatcggg aagagttagc catattacaa gtattagcga aatggcggat
    33061 tgaagaagca caaaagcgca atcttgcctt aaattttgtc gtgaaggagg caagtttagt
    33121 tcaaatcgca aaaagctgtc ctaaacacac ttcttcgctg ttagaattta tgcacccaaa
    33181 tgaagtcaga attcacggaa aaaaaatact atggttggtt gagcaaggaa aagcaataga
    33241 atcgaatgat tatcctgaac tcattcagcg cttggtggat gaaaagggtt ataaatatta
    33301 tatgcaagcg atgttgcaaa aattattaga aattcaaccg cttgatatcg taccggagtt
    33361 ggttgcaagt aaacgtcaat taaatcagct atttaaatgg tatattgatg gaaaaccatc
    33421 agaaaaaatt cctgaattat taatcggttg gcgaaaacct tttggtgaac agctgctatc
    33481 ggttttatct taaatttcat tcgggttaca tagactatgt acagtataat tgcctaaaaa
    33541 ggagtttata tggaaaataa aaaaccacca aaagcattag atgcgattga tttaaaaatc
    33601 ttaaacgagc tacaacgtaa cgggaaaatt tctaatattg aattatcaaa gcgagttggg
    33661 ctttctccaa cgccctgctt agaacgggta aaacggctag aaaaaaataa cgtaattatg
    33721 ggctataaag ctttacttaa ccctgaatta cttgatgccc ctttactggt gattgttgaa
    33781 attactttgg tgcgtggtaa gcctgatgta tttgaagaat ttaataaagc gattcaacaa
    33841 cttgatgaaa ttcaagaatg ccacctggta tcgggggatt ttgattatct gttaaaaacc
    33901 cgtgtggcgg atatggtatc gtaccgtaag ttattaggca caacattgct tcgtttgccc
    33961 ggcgtaaatg acactcgaac ctatgtggtg atggaagaag taaaacaaac caactatttg
    34021 ttgttaaagt aaggagaatt gggtgattga acaacttaaa ccacacctaa aaggcaaaga
    34081 gaacttgatc aaacttatgc ttttgttgac cggctttttg ggcgtttatt tgctaattgc
    34141 ttgggcaagt tatagtccat tagataatgc ttggtctgtt gcaagcagca ttacacaaac
    34201 aaccttgaat aaaacaggtc actttggtgc ttggagtatt gatatgctct atgcaatgtt
    34261 tggtaaggtt gcagttttag tacctattgc attaattatt ttctcaattt atagcttggg
    34321 aatgggttta agtgtcgata tgaaatggaa aactgtcttc attcgcctag ccagtttctt
    34381 attattgatg gtcggtcttg ccgggttatt tagcgtgctt ttttcaaact cagcttatta
    34441 tctgtcgggt ggctttgtcg gtggagtttg ggagacaata ttatctgata ctatcggaca
    34501 atttggtgcc ttattgattg caatgctttt tactatagct ggcttatatt tttgctctgt
    34561 tcaatcatta ttgccaatat taacgcaatt ttatgagtgg ataatggcaa aatcagaaga
    34621 gagcaaaaca gctgaatctc ttcagcattt gcaaaatact gagcaaaaac aaccgcttgt
    34681 aactgaaaat gaagcggtgg aagttgtaga tgaccataaa ccgcaattta ccgatatctc
    34741 cgcctttaaa cgcccaaaca ttagtggttt aagacactcg gaaaatgtag agatagataa
    34801 ccgagaaatg tatgaaattg aaagagatct tgagctaccg actattaata ttttaataca
    34861 gcctgatatg gttaaccaag ttgcggaaca agctacatcg ggctatgagt taccaaacga
    34921 agaatccaat gtattgcaaa tgccgaccat tcgcttaaat accgctatcg aaaacgaggt
    34981 ggatacaatc gaaaacagtt catcattgga agacctgaaa atagcagaat ctatgttacc
    35041 tcaaattcag cttgataatg atattgaaga tactgaagaa gctattgacg atgtgcgtga
    35101 aattacaccg gaatttatgg taacgccgcc caaggcgatg aaagatgtgt ctgagcagcc
    35161 agcctatcca aaaggctatg gtgatacgtt aattcacccg ttgttacaac gaaaagtgat
    35221 aaccgaaaaa ccgacaacac cattgccaac gctagatttg ttggataaag caccgattca
    35281 aagccagcaa attaccgaac aggaaatacg agaaacctct gtgcggctag aagcagaatt
    35341 agcaaacttt ggcgtaaaag ctaccgttga agatgtattg gtcggtccgg tagtgacccg
    35401 ttatgaaatc caaccggctg ccggggtaaa agcctccaaa attaccaatt tagcgagcga
    35461 tatagctcgt ggcttaatgt ttaaagcgat taggattact gaagttatcc caaacaaacc
    35521 ttatatgggt attgaaactc cgaataaaca ccgtgaaaca gtgtggttgc gtgatgtgct
    35581 agacagcgat gaattccgca ataccactgc aacattgcca atggcactag gtaaagacat
    35641 cagtggtgag cctgtggtgg tcgatatggc gaaaatgcca cacttactgg tggcagggca
    35701 gaccggtggg ggtaaatcgg ttggggtgaa tacgatgatt ttaagtctat tgttcaaact
    35761 tacaccagaa caagtccgct ttattatgat tgaccctaaa gtggtggagc tttccattta
    35821 taacgatatt cctcacttat taacgccggt agtaaccgat atgaaaaaag ccgccaacgc
    35881 actacgctgg gcggtggagg aaatggaacg ccgttatttg ctggtaagcc atttacaggt
    35941 gcgtaatatt gaaggctata atgcgaaaat cgaccaagcg gcagcgatga atttgccgat
    36001 tccagatcca acgtggcgac cgggcgattc aatggatagc cttccgcctc cgctacaaaa
    36061 attaagctat attgtgctga ttgtcgatga gtttgcggat ttaatgatgt ctgccggtaa
    36121 agaagtggaa gagtacatta tgcgaattgc tcaaaaagcc cgagcggtgg gaattcactt
    36181 aattcttgct acccaacgtc cgtcaaccga tgtgattacc ggcgtgatta aagccaatat
    36241 tccaagccgg attgcgttta cagtagcgag ccaaattgac tcaagaacta ttttagattc
    36301 aggtggagca gaggcattat tagggcgagg cgatatgctc tattcaggag ctggcagccc
    36361 ggatattatt cggatacacg gtgcgtttat gaaagacgaa gaagtgcaac gcgtggcgga
    36421 taattggcgg gcaagaggaa aaccaaacta cttggaaagc attgtggaat cccgctcgga
    36481 agaggctgat ggcaaaaacg atggcggaac gggcgattta gatccgctat ttgacgaggt
    36541 tgttgaatat atcacggaaa ccggttcggt ctctatcagt aatattcaac gccgcttctc
    36601 gcttggtttt aaccgtgcgg ctagaattgt ggatcaaatg gaagctcaag gcattgtttc
    36661 tgagccactt aaaggtggca aacgagaagt gctggcgagg taaaacacat acaagcggtt
    36721 agatttctgt gaaattttgc aaattttgac aaaaatctaa ccgattgtat ttatctaatg
    36781 ctaaataagc atagtataag gctagtcttt gggctaaaat taacgcaatt tttacatctt
    36841 ttaaggttga atatatgcga ttagatgata ttaaagaaag taaaaatgtt gaagacagaa
    36901 gattcaacaa tgtgggtaga actaaggttg gtagagggaa aggtggaata ttaaccttta
    36961 ttatcgtgct tgttggagct tattatggtg ttgacttaac aggtttaatg ggcggtggcg
    37021 tagaatatga ggagcagaca tcagcattaa atgaaagtga agaaaaacag ctaagaacct
    37081 tatccgctaa agtattaacg accacagaaa atatttggac ttcctacttc cagcaaaatg
    37141 gtctaactta taaagagccg tctttggtgc tttaccgtgg ggcaattcaa actgcctgtg
    37201 gcaccggtca atctgcaatg ggtcctttct attgccctgt cgatcaaaag gtttatttag
    37261 atttatcatt ctatgatgat atgcgtaaaa aattaagagc atcgggcgat tttgccttct
    37321 cttacgtgat tgcacacgag gttggccacc acgtccaaaa tttattgggc ataacaagca
    37381 aaacccaacg ggctcaaatg aaagcctcat ctaaagccga agcaaaccaa atttcagtca
    37441 atgtagaatt gcaagctgac tgttttgccg gcgtttgggg acaccaactc gcaaaagcca
    37501 accgattaga ggaaggcgat gtggaagaag cctttaatgc tgcccaagca gttggagatg
    37561 accgattaca gcaacaaagt cgtggctatg tcgtgccgga tagcttcacc cacggctcat
    37621 ctgcacagcg tttggcttgg tttagaaaag gtttaaccac aggaaatcct gcagtttgta
    37681 atacatttaa ttaaaaaata attaaattat ttgaaatctt tttattatcg tactactatg
    37741 atagtacgat tttattttca ttttatttag agagtgaaca caatgtctta tatcaaaaat
    37801 gacgatgtca gaattaccag tattgaagaa ttactaccac ctattgcatt actggaagcc
    37861 tatccggcaa gtgatgttgc agcggaaacc gttgctaaaa cccgtcaatc aatccacaaa
    37921 attttacacg gtgcggatga tcgcttatta gtggtgattg gaccttgctc cattcacgac
    37981 ccgaaagcgg cattagaata tgcacaaaaa attaaagcaa tgcgtgctga tccgaaaatt
    38041 aaccaaaact tagaagtggt gatgcgtgtc tattttgaaa aaccccgtac aaccgttggt
    38101 tggaaaggct taattaacga cccttatttg aacgaaacct ttgccttaaa cgatggttta
    38161 cgcattgccc gtaaagtatt atctgatatt aatgatttaa gcgtgccgac tgccggcgag
    38221 tttttggata tgattacacc acaatatgtg gctgacttta tgagctgggg agcaattggg
    38281 gcgagaacga ctgaatctca agtccaccgt gaattagcct ctggtttatc ctgtgcggta
    38341 ggttttaaaa acggcacgaa tggtagtgtg aaaattgcat tagatgcaat ttcttccgca
    38401 aaatcgccac accatttctt atcggtcact aaattcgggc attctgcgat tgtttcaaca
    38461 gcaggaaatc ctgactgtca cattattttg cgtggtggcg atagcgcaac caactacgat
    38521 gctgactccg ttgcagcggc ttgtgctgcg attgagaaat ccggcggacg tccacacgtg
    38581 atgatcgatt tcagccacgc taacagccag aagcagttca aacgccaaat ggacgtttgt
    38641 gctgatgtgt gcaaccaaat tgcaggtgga tcagacttta tttcaggtgt gatgattgaa
    38701 agccacttgg tagaaggtcg ccaagactta attgaaggca aaggtttaga ggcgttagtt
    38761 tacggacaaa gtattacaga cggctgcatt ggctgggaag atagtgaaaa agcgttattc
    38821 gcacttgctg aagcggttga aaagcgcaga aattttgcaa aataatcttt tcttgaaccg
    38881 agggcgaata taattcgccc tttatttgtt taaccttaaa gcaaatttaa tttattcaaa
    38941 ctaaacatat gatgaaaccc agcattcttg ctttagatac tgcaacagag gcttgctctg
    39001 tagcgttaca gtataacgga aatatcacgt tcttagatga aatcagccct cgttcccata
    39061 ctcaacgtat tttgccgatg gtagatgaat tacttaatca agccaatatc gaactcaaag
    39121 aagtaaatta tttagtattc ggacgtgggc cgggcagttt taccggtgtg agggtcggtg
    39181 taagtgtggc acaagggttg gcaatgggag cgaatttgcc ggtggtagct gtttctaact
    39241 taaaagcaat ggcagaagaa gcataccaaa aattaggtgc aacaaaggta attgccttaa
    39301 ttgatgcccg aatgaatgaa gtttactttg ctcaatttga acgaaagggt gaagaatgga
    39361 atgaagtggt ggctgaacaa gtctgttcgc cagaagtcgc aataagtcaa ttccaaatga
    39421 gtgaagagac tgtggtggtt ggcacaggtt gggcggcata ttcgcaattt tctgagcaaa
    39481 atctaccgct tgttatcagt gatattacct tgccttccag ccgatatatg ctttcgattg
    39541 ctgaaactga gattcaaaaa ggcaatatcc aatctgcttt tgaaatagaa ccggtgtatt
    39601 tgcgtaatga agttacttgg gaaaaactac ctcataagca ataatctatt gaacttatgg
    39661 ttaagtgaat aaatattgca aaaagcccat ataacaggca atagtgaata ggattacacc
    39721 aagtaattta gtagttaatt cgggactcaa gatattgcgt aatttcattg aaaaatagac
    39781 agtaaagaga gaacttatca ctacggtgcc gacaattgca aaattcacat agccgatttg
    39841 ccaagttgct aaggttgaat tcaacacaaa agggcgggat aagtagccat ataaattgcc
    39901 gattccgcca atcaccatca tatagttagt ataaactgca acctgtttcg gtgaaaccga
    39961 gcgtatttgc gtgacaatcg gagccataat cgaaccgccg ccaatgccgg taatacctgc
    40021 aattaaaccg cctaaactgc acattgtggc attagatact gcttcttttg gtttaggtgg
    40081 tactattgct ttaactcttg gtttgtgaaa tagggtttta aatgaaagtg tcagcagggt
    40141 tagaataaag atagcgataa tgctgttatc agagaaaaga aaactgagtt caaacccaat
    40201 ttgtacgcct aacatcatcg caagtgacca aatcaacaca ttttttcgat tgatttttat
    40261 ctgttgatgg tggaataagc ataaattgat agtggctgaa ccaatcacaa tggtaagaga
    40321 gcaggcggaa atcacttgga gaggcagttc aggaaacagt gaatgtaaaa tcggcatcat
    40381 taaaacaccc ccgccaatcc caaatagtgc agaagtgata ttgactataa tgccacaaat
    40441 gatcaaaata attatcacgg tcattgtcat aatccatctc ctaaagtgtg ataagtatgc
    40501 aaaattttc
//
LOCUS       DANLVT010000008        36143 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.008, whole genome shotgun sequence.
ACCESSION   DANLVT010000008 DANLVT010000000
VERSION     DANLVT010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 36143)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36143)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36143
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.008"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            36..971
                     /gene="pheS"
                     /locus_tag="PXC99_000357"
     CDS             36..971
                     /gene="pheS"
                     /locus_tag="PXC99_000357"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013747044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HDL5416853.1"
                     /translation="MDQNLEALEEFRVEYFGKKGHFTTLMQELRNIAAEERPAIGAKI
                     NEAKQVVLDVLNAKKEEWEQAVLNAKLANESIDVSLPGRKTELGGLHPVSITIERVVK
                     FFSELGFTVANGPEIETDYYNFDALNIPDHHPARADHDTFWFDANRLLRTQTSGVQIR
                     TMENVKPPIRIVAPGRVYRNDYDQTHTPMFHQIELLYVDKEANFTELKGLIHDFLKAF
                     FEEDLQVRFRPSFFPFTEPSAEVDVMRQNGKWLEVLGCGMVHPNVLRNVGIDPEEYSG
                     FAVGMGVERLTMLRYNVTDLRSFFENDLRFLKQFK"
     gene            1019..3406
                     /gene="pheT"
                     /locus_tag="PXC99_000358"
     CDS             1019..3406
                     /gene="pheT"
                     /locus_tag="PXC99_000358"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HDL5416854.1"
                     /translation="MKFNESWLREWVNPAISTEQLCDQITMLGLEVDDVEPVAGAFSG
                     VVVGEVVECAQHPDADKLRVTKVNVGGERLLDIVCGAPNCRQGLKVACAVEGAVLPGD
                     FKIKKTKLRGQPSEGMLCSYSELGIKEDHSGIIELPADAPIGQDFREYLNLNDVAIEI
                     SLTPNRADCLSIAGIAREVGVINRVDVKAPTITDVKATISDKVSVELQAPEACPRYLA
                     RVVKNVNVKATSPLWLQEKLRRCGIRSIDPIVDITNLSLLELGQPMHAFDAAKIEGGI
                     QVRMAKEGEELVLLDGTNAKLQSNTLVIADSKGALAMAGIFGGEASGVSENTKDVVLE
                     SAFFAPLAITGRARQYGLHTDASHRFERGVDPELTRQAMERATALLLEICGGEAGEIV
                     EAVSQENLPKRNTVTLRRSKLDSVIGHHIDDATVTDILTRLGLNVTFADNSWTAIAPS
                     WRFDIEIEEDLIEEIARIYGYNSIPNNSPLAHLTMKGTPEKLLEANRIRMALVDSDYQ
                     EVITYSFVDPKKQSLLHPQQEALILPNPISSEMSAMRVSLLTGLLDTIVYNQSRQQNR
                     VRIFEAGLRFIPDSNAESGVRQEFVFGAAIVGDKRPVHWENKSEAADFFDLKGDIERI
                     LSLTSIRHDLQFVAKQFPALHPGQSAAIMLDGKEIGFIGTVHPSIVQKFGIKGKPIVC
                     EILASAIAERPVTQAGEISKFPANNRDIAVVVDESVPAGEVLEACRKAGGNKLVAVNL
                     FDVYRGSNLESGKKSLAISLTVQDNEKTLEENEINAVIQAVLAELATRFNAVLRD"
     gene            3464..3760
                     /locus_tag="PXC99_000359"
     CDS             3464..3760
                     /locus_tag="PXC99_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HDL5416855.1"
                     /translation="MALTKIEIAENLIEKFGLEKRVAKQFVELFFEEIRSSLENGEEV
                     KLSGFGNFSLREKKARPGRNPKTGENVAVSARRVVVFKAGQKLRERVEQASSQS"
     gene            3799..4320
                     /locus_tag="PXC99_000360"
     CDS             3799..4320
                     /locus_tag="PXC99_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL5416856.1"
                     /translation="MKLTKRWLSLGCLLAITAMLVACSSSDTTSKSQVKSKVYRSIYQ
                     SDLSDPIMAISRLSEHQHEWKGTRYRLGGNSKAGIDCSGFMQVTFKDLFGIDLPRTTT
                     EQAKAGERISKDELRTGDLVFFKTGRGPNGKHVGVYVKNGQFLHASTKGGVIYSDLDS
                     PYWSKAFWQARRL"
     gene            4336..5379
                     /gene="degS"
                     /locus_tag="PXC99_000361"
     CDS             4336..5379
                     /gene="degS"
                     /locus_tag="PXC99_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane-stress sensor serine
                     endopeptidase DegS"
                     /protein_id="HDL5416857.1"
                     /translation="MLKKIGQAVIFGLFCAILILFVAPIIQSKGSSFSLSAFTQKEIV
                     SYNAAVKIASPAVVNVYSRNFSSENETFEVKNLGSGVIMSSDGYILTNRHVIEDADQI
                     VIALQNGAISTNVKLVGDDSLTDLAVLKIEGENLPTIPQNPERKLQIGDVVLAIGNPL
                     NLGQSITQGIVSAIGRKTLTESGRQNFIQTDVSINQGNSGGALINTAGELIGINTLRF
                     GKNTNELSEGLNFAIPINLANQIMSKIIKDGRVIRGYFGVSTDLLDTAKMQGYEKGVI
                     IVNVDKNGPAAKAGIQAGDLVLKVGDIEAFSPSQMMEELAEMKPYTTVKVLVQRDEQL
                     LNFDVTITELQTQ"
     gene            5388..6062
                     /gene="cmk"
                     /locus_tag="PXC99_000362"
     CDS             5388..6062
                     /gene="cmk"
                     /locus_tag="PXC99_000362"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HDL5416858.1"
                     /translation="MKKIVITVDGPSGAGKGTLCHALAEKLGFDFLDSGALYRITALS
                     AIKKEVPLDDEEKLAEVGRNLDIQFLPENGEIQVILEGENVGDLIRTAEAGQNASKVA
                     AFPLVREALLERQRAFSSEKGLIADGRDMGTVVFPDAQIKLFLDASAEERTKRRVKQL
                     QEKGFNANFDEILAEIKERDFRDRNRSVAPLVPAKDALLLDSTHLSIEDVINQALNHI
                     AQYIKF"
     gene            6154..7821
                     /gene="rpsA"
                     /locus_tag="PXC99_000363"
     CDS             6154..7821
                     /gene="rpsA"
                     /locus_tag="PXC99_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HDL5416859.1"
                     /translation="MSELSFAQLLEESFAATPRLGDVVKGTVVAIQKGLVIVDTGFKS
                     ESAIDASEFTNAQGELEVQVGDEVDVVLKAVEDGFGATVVSRGDAKRNEAWIALEKAF
                     EEQATVIGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPVRDSLNLEGKEYEFKVIKLD
                     QKRNNVVVSRRAVIETESNQDRDAVLANLVEGSEVKGTVKNLTDYGAFVDLGGVDGLL
                     HITDMAWKRVKHPSEVVNVGDEVTVKVLKFDKDKTRVSLGLKQLGQDPWAVIAENHPV
                     NSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLE
                     VDEERRRISLGLKQCKANPWEQFAATHSKNDKVSGKIKSITDFGIFIGLEGGIDGLVH
                     LSDISWNVSGEEAVRNYKKGDEVEAVVLQVDAVKERISLGIKQLESDPFTNFVDGTKK
                     GAILTGKVVEVDAKGVKVELEGGVEAFIRANEATAERVEDITSVISVGDSIEAKYTGV
                     DRKSRVVNLSVRAKNEAEESAAIAQVNKEEVVVPNAFAEAFKAAKGE"
     gene            7950..8231
                     /locus_tag="PXC99_000364"
     CDS             7950..8231
                     /locus_tag="PXC99_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HDL5416860.1"
                     /translation="MTKSELIESLASKNPSLPIKMVEHCVKELLEQLTATLEEGERIE
                     VRGFGSFSLHYRQPRLGRNPKTGESVLLGAKYVPHFKAGKDLKERVDLL"
     gene            8268..8555
                     /locus_tag="PXC99_000365"
     CDS             8268..8555
                     /locus_tag="PXC99_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1049 domain-containing protein"
                     /protein_id="HDL5416861.1"
                     /translation="MIKYILGILIVIAVIIVAVTIGANNDQLITFNYIFAQSELRLST
                     LVAILFGLGLILGWLVTGIFYLKIKFQNVALNRRVKRQAQQITELTTPKAE"
     gene            8559..9755
                     /gene="lapB"
                     /locus_tag="PXC99_000366"
     CDS             8559..9755
                     /gene="lapB"
                     /locus_tag="PXC99_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HDL5416862.1"
                     /translation="MLELLFLLLPIAALYGWYMGQRSAKKDQETASNKFSREYVTGLN
                     FLLSNQQEKAVDLFLSMLQKQESENHIASESQFEAELTLGNLFRSRGEVDRALRIHQT
                     LVNSPHYSFDQKLLAKQQLAKDFMVAGFYDRAENYYISLVDEPEFAKYSLSQLAVIYQ
                     KTREWKKAINVTEKRLRIEPDADKIPLSHFYCEYAQGVKFDDKAAFIESLNKALEYYP
                     QSTRASIILGDFYLEEGEYLRALSYFEQILVQDPDYISEVLGRIKQSYMALEDLNGYE
                     LFLIRANRVKHNSSVDIALTEFIEEKDGINAAHSKLYQQLSTYPNLITFHRFIRYQAD
                     FAEEGNGKESLVLLHNMVGNQIKRSFQYRCLNCGYQSYRLMWQCPSCNQWEKIKPVQS
                     IEGIIQ"
     gene            9779..10471
                     /gene="pyrF"
                     /locus_tag="PXC99_000367"
     CDS             9779..10471
                     /gene="pyrF"
                     /locus_tag="PXC99_000367"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HDL5416863.1"
                     /translation="MNNKVIVALDYETEREALEFVDLVDPSLCRLKVGKEMFTTLGTN
                     FVKQLHERKFDVFLDLKYHDIPNTVARAVRSAADLGVWMVDLHASGGLAMMEEAKKIL
                     EPYGKEAPLLIAVTVLTSMEDLDLLQIGINASPMEQVIRLAHLAQRAGLDGVVCSPQE
                     VEVLRTHCGQDFKLVTPGIRPKGTDFGDQRRVMTPKQAVETGSDFLVIGRPITQAQDP
                     LAVLKSINQSIS"
     gene            10554..10865
                     /gene="yciH"
                     /locus_tag="PXC99_000368"
     CDS             10554..10865
                     /gene="yciH"
                     /locus_tag="PXC99_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response translation initiation inhibitor
                     YciH"
                     /protein_id="HDL5416864.1"
                     /translation="MTLVYSTETGRIKSEVIKEERPKGDGIVRIQRQTSGRKGKGVCL
                     ITGLDLEDKALNSLASELKRKLGCGGSFKDGVIEIQGDNRGFIKQILEQKGFKVKLAG
                     G"
     gene            10968..13130
                     /locus_tag="PXC99_000369"
     CDS             10968..13130
                     /locus_tag="PXC99_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HDL5416865.1"
                     /translation="MWKKTLIAVFLASQYAFAVGTGKEPSKSYTETELKQLKNDWLAI
                     YQKELQYAENLRLKQRENFQQINYLADAAISQKNLSLSTEQIIQRLLLTLAGYPLEMK
                     AEWKLLNAKITLKQATESEVKAFISKYPDSLYQRQLQNLMFELLYREQKFPELLEYAQ
                     NVKQSSLADQCRLFSARYELAASKAQINPEVSQVTEQKAENAELLALVQEFDRFWLAT
                     PKLTSDCANLESYWRDQGLKTDEKMRLKAVELIKQNANAELANLAANVNNENLKIWLS
                     SVEKVANNPADLQNFIENQPLDSPFYADNKAIIQQLFAKYVRTLSENMENPSFQQYQT
                     WAEKYQLSSEEINGWKNAFITRFFDNPEPTFQFWRDEQIKLLKTDNLTERRLRMAIWQ
                     KADLNEWLVLLSQQAKEKAEWRYWAAKEEKNEAKRKVDFESLAKERGFYAMLAAQQLG
                     IVYQIPMLEVPELTQAQLELYANQLARIQELRELGQFDQARKIWIDWIKNIKPEAGEN
                     TPTKIQLALIKYAKDKNWYDLAVEGTIQTKAFDYLDLRLPNAYSDWFDLHLQDKKISK
                     TFAQAIARQESAWNAQAQSHANARGLMQLLPTTAQKTAKDNGLTFKDGNDLFQPFNNI
                     MLGTTHLMELNEKYPNNRILIASAYNAGAGRVEQWLKRSNGQLAMDEFIASIPFYETR
                     GYVQNVLAYDYYYQMLYSDINDKNGLKMFYQEELTRKY"
     gene            13179..13255
                     /locus_tag="PXC99_000370"
     tRNA            13179..13255
                     /locus_tag="PXC99_000370"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13213..13215,aa:Met,seq:cat)
     gene            13482..13943
                     /gene="rimP"
                     /locus_tag="PXC99_000371"
     CDS             13482..13943
                     /gene="rimP"
                     /locus_tag="PXC99_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HDL5416866.1"
                     /translation="MATLEQKLEDLVLDSIEALGFELVGIECQRAGRFLTVRLYIDKE
                     GGVTIDDCSDVSRQVSAIFDVEDPIADKYNLEVSSPGLDRPLFTVAHYERFIGQDVVI
                     HLRIPMFDRRKWQGKIKQVEGDFITLTVENEDRQFAFGNIQKANLVPVFNF"
     gene            13964..15460
                     /gene="nusA"
                     /locus_tag="PXC99_000372"
     CDS             13964..15460
                     /gene="nusA"
                     /locus_tag="PXC99_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HDL5416867.1"
                     /translation="MSKEILLAAEAVSNEKQLPKEAIFEALETALTIATKKSRDLDID
                     VRVVVDRKTGDFQTFRRWAVVENVNNMTREISLEAAQFEDPNVQLGDFIEDEVESIEF
                     GRVAIQTFGQVVKTKIREAEKTKIIDEFRSDLGKIILATVKKVTRDNIFLELQGKSED
                     IKGEAVIVREDMIPRENFRPGDRVRGVLYEIKPESKGPQLFVTRAKPVMLEELFKLEV
                     PEIGEGVIEIKGSARDVGSRAKIAVKTHDKRIDPVGACVGMRGARVQAISNELGGERV
                     DIVLWDENPAQFVINAMAPADVSSIVINDETHSMDIAVEAKNLAQAIGRNGQNVRLAT
                     QLTGWALNVMTVEELTKKSEEEDGKVINLLTSALEIDEEFAQVLIEEGFTSLEAIAYV
                     PVDTLTAIDGLEDEDLVEELQSRAKNAITKKALEEEKLLKSAQIEEKLLTLEGMDRHI
                     AFKLAEKQITTLEELAEQGVDDLADIEELSEEKAGELIMAARQICWFN"
     gene            15445..18012
                     /gene="infB"
                     /locus_tag="PXC99_000373"
     CDS             15445..18012
                     /gene="infB"
                     /locus_tag="PXC99_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HDL5416868.1"
                     /translation="MLVQLSKEDNKMTEEKKTLSLGGARKASKVNTTTTSGKVKAVEV
                     KEKKPKIDAKALQEKAAKEAAAAKARAEKEAAEKLAKEKAEAEAKEKAAKKAAESTAS
                     KPISVPVMPSSKAKEEKPKAQQVQPKQEKAVDPEKEAKRKEEAELRRKQEELAQQKAE
                     MEAKRAAENARRLAEIAREEAEDNGNEDFDDERFTSSYAREAERDNDRRSEGNRGRNG
                     KGNVAKAKKGGREEDKNERSADRRNHKEVKGKGKQGKKGAALQQAFTKPAQVVKADVV
                     IGETITVAELANKMAVKATEIIKMMMKMGEMVTINQVIDQETAQLVAEELGHKVILRK
                     ENELEEAVLEDRDTHAEKVTRAPVVTIMGHVDHGKTSLLDYIRKAKVAAGEAGGITQH
                     IGAYHVETDDGKMITFLDTPGHAAFTSMRARGAKATDIVVLVVAADDGVMPQTIEAIQ
                     HAKAAGAPLVVAVNKIDKPEANPDRVEQELLQHEVISEKFGGDVQFVPVSAKKGMGID
                     DLLEAIILQSEVLELTAVKDGMASGVVIESYLDKGRGPVATILVQSGTLNKGDIVLCG
                     FEYGRVRAMRDENGKDVESAGPSIPVEVLGLSGVPAAGDEATVVRDEKKAREVALYRQ
                     GKFREVKLARQQKAKLENMFSNMAAGDVAELNIIVKADVQGSVEAISQSLMELSTDEV
                     KVKIVGSGVGGITETDATLAAASNAIMVGFNVRADASARRVIENENIDLRYYSIIYEL
                     LNDVKAAMSGMLQPEFKQEIIGLAEVRDVFRHPKFGAIAGCMVTEGIVKRNNPIRVLR
                     DNVVIFEGELESLRRFKDDVSEVRNGMECGIGVKNYNDVKVGDQIEVFEVVEVKRTI"
     gene            18097..18477
                     /gene="rbfA"
                     /locus_tag="PXC99_000374"
     CDS             18097..18477
                     /gene="rbfA"
                     /locus_tag="PXC99_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HDL5416869.1"
                     /translation="MSREFKRSDRVAQELQKEVAVILQREVKDPRIGMVTVSDVEVSR
                     DLAYAKIFVTFLFDNDAEAIKQGMQGLEKASPYIRTLLGKAMRLRIVPELRFIYDESL
                     VEGMRMSNLVSSVIKNDEEKHKED"
     gene            18480..19403
                     /gene="truB"
                     /locus_tag="PXC99_000375"
     CDS             18480..19403
                     /gene="truB"
                     /locus_tag="PXC99_000375"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HDL5416870.1"
                     /translation="MSRPRKRGRDIHGVFLLDKPQGMSSNDILQKVKRIFQANKAGHT
                     GALDPLATGMLPICLGEATKFSQFLLDSDKRYLVTAKLGERTDTSDAEGQVVETKAVA
                     VTKSQILAALEKFRGDILQVPTMFSALKHNGKPLYEYARAGITVEREARPITIFELNF
                     IEYKAPFLTLEVHCSKGTYIRTLVDDLGEELGCGAHVTMLRRTAVADYPIEKMMSYAD
                     LQNLAENQPLAELDQHLLPMDTAVSALAKINLSSEQTKAVGFGQRIRFDNLNQLYGLV
                     RLYSEDEQFLGVAEITNDTVIRPNRMINLTE"
     gene            19406..20486
                     /locus_tag="PXC99_000376"
                     /pseudo
     CDS             19406..20486
                     /locus_tag="PXC99_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252783.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
     gene            complement(20524..21048)
                     /gene="tadA"
                     /locus_tag="PXC99_000377"
     CDS             complement(20524..21048)
                     /gene="tadA"
                     /locus_tag="PXC99_000377"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HDL5416871.1"
                     /translation="MFIKPNQTSCPLQISEQDIAFMQYALDLADLAEAKGEIPVGAVL
                     VDKNQQIIGRGWNQTIQLCDPSAHAEMQAIRQAGQTLGNYRLLDCTLYVTLEPCPMCA
                     GAILHSRIKRLVFGASDYKTGAVGSRYHLFEDYKMNHFLEVHGNVLGRECSQKISDFF
                     KQRRLQKKGDALIK"
     gene            complement(21130..22938)
                     /locus_tag="PXC99_000378"
     CDS             complement(21130..22938)
                     /locus_tag="PXC99_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HDL5416872.1"
                     /translation="MTTESLTFADLGLPQPILDAVNEMGFVNPSPIQQECIPHLLAGR
                     DVLGMAQTGSGKTAAFSLPLLAQIDPTQRHPQMLVMAPTRELAIQVADACEQFAKNMK
                     GIRVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADE
                     MLRMGFIDDVETVMAELPETHQTALFSATMPEPIRRITRRFMKDPQEVKIKATERSAP
                     DIEQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALN
                     GDMTQQAREQTLDKLRSGRLDILVATDVAARGIDIERISLVINYDIPLEEESYVHRIG
                     RTGRAGRSGRALLFVEPRERRLLRNIENLIKKPINEVAIPNHEILMEKRREKFKARIS
                     KQLEHHDLEKYRELLEDLFTADQDHEELAAAMMMLLQEKQKLILPPDPVVRAARSERG
                     RDRNERNDRRNGREHRENNGVAMDLYRIELGREDGVEVRHIVGAIANEGDISSRYIGH
                     IKLYDKYSTIELPQGMPNHLVQHFAHKARVLSKPMQMTLLGSANSASNANPFEGRGRR
                     GNDRNDRGGRRDGGFNKDRKGGFKEKRFSEKRGRRD"
     gene            complement(23140..24063)
                     /gene="nlpI"
                     /locus_tag="PXC99_000379"
     CDS             complement(23140..24063)
                     /gene="nlpI"
                     /locus_tag="PXC99_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein NlpI"
                     /protein_id="HDL5416873.1"
                     /translation="MVQLFKLFRIRFLLLNLISVLMLSGCTSRYADLVSIKNLALAEL
                     NPQLRFEQEAMVVRLSQVLEEAPLTPSEQADLYFERGVIYDSLGLWSLARYDFAQAIS
                     LNQRMAAAYNYMGLYLLLEGDYDSSIDAFNAVLELDREYSYTYLNRGLAFYYSGRYSE
                     AQRDLLHFYEEDKKDPYRALWLYFNELEFTPTEAKNNLQKRANNLSSDYWGTNIVNYF
                     LGKLNLAQVRAIMERDAKENSSQYAEILTETYFYLAKQQLKLDHKDEAISLFRLALAN
                     QVFNFVEYRFALFELSQIRGMTQTTPVVDKE"
     gene            complement(24144..26294)
                     /gene="pnp"
                     /locus_tag="PXC99_000380"
     CDS             complement(24144..26294)
                     /gene="pnp"
                     /locus_tag="PXC99_000380"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HDL5416874.1"
                     /translation="MTPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVV
                     AKKDVKEGQDFFPLTVDYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLF
                     PEGFFNEIQVIATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQF
                     VLNPTTSEQKISRLDLVVSGTDKAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENI
                     KEFVKEAGKPRWDWVAPEPNTDLINKVKALAETRLGDAYRIVEKQVRYEQIDAIKAEV
                     IAQLTAEDETVSEGTIIDIITALESQIVRSRIIAGEPRIDGRTVDTVRALDICTSVLP
                     RTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSDRFLFHYNFPPYSVGETGRI
                     GSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEITESNGSSSMASVCGASLALM
                     DAGVPIKAAVAGIAMGLVKEDEKFVVLSDILGDEDHLGDMDFKVAGTRTGVTALQMDI
                     KIEGITPEIMRIALNQAKGARMHILGVMEQAIPAPRADISDYAPRIHTMKIDPKKIKD
                     VIGKGGATIRALTEETNTSIDIDDDGTVKIAATDGNAAKAVMARIEEIVAEVEVNQIY
                     NGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLTVGQEVQVKVVEIDRQG
                     RIRLTMKDINNTNEANAEETVAENVVETEQENNF"
     gene            complement(26556..27836)
                     /gene="phoR"
                     /locus_tag="PXC99_000381"
     CDS             complement(26556..27836)
                     /gene="phoR"
                     /locus_tag="PXC99_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon sensor histidine kinase PhoR"
                     /protein_id="HDL5416875.1"
                     /translation="MKVKLSLKHFLLELLLAAAVAGVFNLFFPAYFFWFSFCLLVLLI
                     WHHHTESSLLQLLRPNEQSGRSKVTTMEHLSQSAAFYHERLRQDKIKTLRLLSKLNKH
                     IQYLPDAIIICQENGEISWCNNVAQELFEFYWDKKSNKSIFNVIFYPEFKSYFRQQRH
                     HRPLVLLTHNKRYIELNLNRYDSNSRLIVARDVTSFVRLMHSRQTFLANMNHELRTPL
                     TILQGYLEMLENEPHNMALQQKALNAMKEQSQRMTNLLRQLSLLVKIEHSNDSEHNEV
                     QMSALISAIQKNTEILSQNQQILFDIEPNLTVWGDQEQLQSAVSNLIYNAIRHAGEGV
                     TIQICCQRDNQEPNTAIFSVQDDGIGIDAHHITHLTERFYRVDESRSNKTGGSGLGLA
                     IVKHALEQHHSTLEIESEAGKGSRFSFKLPLIKK"
     gene            complement(27839..28525)
                     /gene="phoB"
                     /locus_tag="PXC99_000382"
     CDS             complement(27839..28525)
                     /gene="phoB"
                     /locus_tag="PXC99_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006996031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon transcriptional regulator
                     PhoB"
                     /protein_id="HDL5416876.1"
                     /translation="MNNKILIVEDERAIREMLSLYLSKQYQVIEAEDYQSAINKLGEK
                     PELILLDWMMPGRSGIHLIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYIT
                     KPFSPQVLLARIEAVWRRSYDPPSNLINIDGLILDQQAQRVLVAEQEVKLSGTEYKLL
                     HFLMTHPEKVYRREQLLDFIWGNDIYVEDRTVDSYIRRLRKSLEPYGFERYIQTVRGS
                     GYRFSNHFQD"
     gene            complement(28609..29379)
                     /gene="pstB"
                     /locus_tag="PXC99_000383"
     CDS             complement(28609..29379)
                     /gene="pstB"
                     /locus_tag="PXC99_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HDL5416877.1"
                     /translation="MLPTDLETKLHINNLNFYYGDFHALKNINMRIAKNKVTAFIGPS
                     GCGKSTLLRTLNRMFELYPNQRATGEINLDGENLLTSDTDISIIRAKVGMVFQKPTPF
                     PMSIYDNVAFGIRLFEKLPKSELNDRVEWALTKAALWNEVKHKLNQNGDSLSGGQQQR
                     LCIARGIAVKPEVLLLDEPCSALDPISTMKIEELINELKHDYTVAIVTHNMQQAARCS
                     DYTAYMYLGELIEFGDTKQIFDKPKFRQTEDYIKGKMG"
     gene            complement(29389..30237)
                     /gene="pstA"
                     /locus_tag="PXC99_000384"
     CDS             complement(29389..30237)
                     /gene="pstA"
                     /locus_tag="PXC99_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005650601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HDL5416878.1"
                     /translation="MKNYQNRRFYCRKIKNVLMLSLAYSAVLFGLFWLVWIIVTLLQK
                     GIPALSWELFTRPTPAPNETGGLRNAIVGSILIVSTATLIATPIGILAGTYLSEYGRY
                     TKLAKFTRFLNDVLLSAPSIIIGLFIYAIYVAQVKHYSGWAGSLALAVLVIPIVVRTT
                     DSMLNLVPNNLREAAAALGCPRWRVITMISYRAARSGIITGVLLAVARISGETAPLLF
                     TALSNQFASLDMNAPMANLPVVIYQYAASPFADWNTLAWAGAMLITLFVLSLNIITRL
                     YFSKTK"
     gene            complement(30234..31193)
                     /gene="pstC"
                     /locus_tag="PXC99_000385"
     CDS             complement(30234..31193)
                     /gene="pstC"
                     /locus_tag="PXC99_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HDL5416879.1"
                     /translation="MHKHKIDNKCLNHPWVEGLFHHTTRFFALLVFALLVVVLVSLLL
                     GSWEALSRFGVSFLWENEWNPVNDRYGALVPIIGTLISAGIALVIAVPVSFGIATFLT
                     ELAPQWLKRPVGTAVEMLAAIPSIIYGMWGLFVFVPLFQEYVQPYLIDTFGQLPFIGM
                     LFSGAPFGIGLFSAGLVLAIMIIPFIASIMRDVFSVVPPLLKESAYGLGSTTWEVIWK
                     VVLPYTKTGVIGAIMLGLGRALGETMAVTFVIGNAFMLPDSVFSPSTSIASAIANEFN
                     EAGGLQKSALMSLGLILFLITSIVLAASRLLIARMGKQEGKRE"
     gene            complement(31274..32311)
                     /gene="pstS"
                     /locus_tag="PXC99_000386"
     CDS             complement(31274..32311)
                     /gene="pstS"
                     /locus_tag="PXC99_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005756281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HDL5416880.1"
                     /translation="MAKRFKLLTVLGISFSLSVAANAQTITGAGASFPYPIYAKWAGL
                     YEKETGNKINYQSIGSGGGQQQIIAKTIDFGASDDPMKGETLAEHKLLQFPAIIGGTV
                     PVVNIPELKSGELKLSGKVLADIFLGKITQWNDPAIVALNQDIALPAKTILVVRRSDG
                     SGTTFGWTNYLSKVSAEWKEKVGEGKSVKWPVGQGGKGNEGVAAYVKQLKYSIGYVEY
                     AYAKQNALAWVSMQNADGKFVQPSRETFAAAAANADWSQTAGMGVILTNEAGEKAWPI
                     TAASFILIHQHSDKPEQTKGVFKFFDWAFKHGKDAAAELDYVPLPDNVVEKIQTQWKT
                     EVKDGQGNSLY"
     gene            32496..34742
                     /gene="parC"
                     /locus_tag="PXC99_000387"
     CDS             32496..34742
                     /gene="parC"
                     /locus_tag="PXC99_000387"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HDL5416881.1"
                     /translation="MTTEINYEGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLK
                     PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRY
                     PLVDGQGNWGAPDDPKSFAAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPK
                     YLPARLPHILLNGTMGIAVGMATDIPPHNINELADASVMLLDNPKATLDDVLSVVQGP
                     DYPTEAEIITPKAEIARMYEQGRGSIKMRAVWKKEEGEIVISALPHQASPSKIIEQVA
                     TQMRNKKLPMVDDIRDESDHENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNM
                     NMIGLDGKPAVKNLLTILNEWLSFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNID
                     EVIEIIRNEDEPKAELMARFNLTDVQAEAILNLRLRHLAKLEEHQLQAEKSELEKERD
                     ELQLILGSERRLNSLIKKEIQADAKAFASPRRSPLVERAESKAIAESDLTPTEDVTVI
                     LSEKGWVRCAKGHDIDVQALSHRAGDGYLAHARGRSNQPVVFLDSTGRAYALDPTSLP
                     SARSQGEPLTGKITLPEGAVVQQVLMASPETKVLMASDSGYGFICTFADLVSRNKAGK
                     AVISLTENAKVLPPQLLENDENLSLVAMSNVGRMLVFPVSELPQLSKGKGNKIINISA
                     AAAKSGDEYLARLLVIKPTNSLVFVSGKRKITLKPSDVDNYRGERARKGSQLVRGLST
                     NSTVEIVE"
     gene            complement(34813..>36143)
                     /gene="lysC"
                     /locus_tag="PXC99_000388"
     CDS             complement(34813..>36143)
                     /gene="lysC"
                     /locus_tag="PXC99_000388"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lysine-sensitive aspartokinase 3"
                     /protein_id="HDL5416882.1"
                     /translation="FGGTSVANFDAMTSSANIVIADANTRVVVLSASAGVTNYLVELA
                     NGCEKEHRDEVIAAVRQIQYNIIEKLQHQDAVKAEIDELLERIETLAESASLATSAAL
                     SDELISHGEMMSTKIFTQLLIERGHPAVWVDVRDVVATNSHYGKAAPNDEKTQQQSDN
                     VIKPLIASGKIVITQGFIGRDDEGKTTTLGRGGSDYSAALLAEVLNANDVLIWTDVPG
                     IYTTDPRVVPNAQRIDTMAFNEAAEMATFGAKVLHPATLLPAVRSNIPVYVGSSKAPE
                     QGGTWVTRDPQPRPTFRAIALRRNQILLTLSSLSMLHAQGFLANVFAILAKHKISVDV
                     ITTSEVSVALTLDKTGSASSGADMLSAELLDELNAYCNVQVESDLALVAIIGNNLHAQ
                     SGVAKKLFHTLENYNIRLISYGASSNNVCTLVKNAEADDVVRSLHKGLFE"
BASE COUNT        10920 a         6811 c         8150 g        10262 t
ORIGIN      
        1 atttaactaa taaagcacgt gaagctttag ataagattga tcaaaattta gaggctttag
       61 aagagtttag agtcgaatat tttggtaaaa aagggcattt tacaacgtta atgcaagaat
      121 tacgcaatat tgcagcggaa gaaagaccgg caatcggagc aaaaattaat gaagcaaagc
      181 aagttgtgct tgatgtgtta aatgccaaaa aagaagaatg ggaacaagct gtattaaatg
      241 caaaattagc taatgagagc attgatgttt cactgccggg gcgtaaaact gaattaggtg
      301 gtttgcaccc tgtttctatc actattgagc gtgtggtgaa atttttctct gaattaggtt
      361 ttaccgtagc aaacggacct gaaattgaaa ccgattacta taacttcgat gcgttaaaca
      421 ttccggatca tcatccggct cgagcggatc acgatacgtt ttggtttgat gccaatcgtt
      481 tattaagaac ccaaacctcg ggtgtgcaaa tccgtacaat ggaaaatgta aaaccgccta
      541 tccgtattgt ggcaccgggg cgtgtatatc gtaatgacta cgaccaaacc cacacaccga
      601 tgtttcacca aatcgaattg ttatatgtgg ataaagaagc aaactttacc gagttaaaag
      661 gcttaattca cgattttctc aaagcattct ttgaagaaga tttacaagtg cgtttccgcc
      721 cgtcattctt cccattcact gagccttctg cagaagtaga tgtaatgcgt caaaacggca
      781 aatggttaga agtgttaggt tgcggtatgg tacacccgaa tgtgttacgc aatgtaggga
      841 ttgaccctga agaatatagc ggttttgctg tgggaatggg cgtcgagcgt ttaacgatgt
      901 tacgctacaa tgtcacggat ttacgttcat tctttgaaaa tgacttacgt ttcttaaaac
      961 aatttaagta atacaagcgg ttaaaaattt agaaaatttt acaaatagga tagaaataat
     1021 gaaattcaat gaatcttggt tgcgtgaatg ggtaaaccca gcaattagca cagaacagtt
     1081 atgcgaccaa attacaatgt tagggttaga agttgacgat gtagagccgg tagctggtgc
     1141 gttttcgggt gtagttgtgg gtgaagtggt ggaatgcgcc cagcacccgg atgctgacaa
     1201 attgcgtgtc actaaagtga atgttggtgg cgaacgttta ttagatattg tttgtggtgc
     1261 accaaactgc cgtcaaggtt taaaagtggc ttgcgctgtt gaaggtgcag tgctaccggg
     1321 cgatttcaaa attaagaaaa ccaaattgcg tggtcagcct tcagagggga tgttatgttc
     1381 ttactcagaa cttgggatta aagaagatca tagcggtatt attgaattac ctgctgatgc
     1441 acctattggt caagatttcc gtgaatattt aaatttaaat gatgtggcga ttgaaatcag
     1501 ccttacgcca aaccgtgccg actgcttaag cattgccggc attgctcgtg aagtgggggt
     1561 gattaaccgt gtcgatgtga aagctccaac tattacagat gtaaaagcca cgatttcaga
     1621 taaagtttca gtggaattac aagcaccgga ggcttgccct cgctatttag cccgtgtggt
     1681 gaaaaatgtg aatgtcaaag cgacatcgcc actttggtta caagaaaaat tacgccgttg
     1741 tgggattcgc tcaatcgatc caatcgttga tattactaac ttgagccttt tagaattagg
     1801 gcagccaatg cacgcctttg atgcagcgaa aattgaaggt ggcattcaag tgcgtatggc
     1861 aaaagaaggc gaagaattgg tattgctaga tggcacaaac gctaaattac aatcgaatac
     1921 cttagtgatt gctgatagca aaggggcatt ggctatggca ggtattttcg gtggcgaagc
     1981 cagcggggtg agcgagaata cgaaagatgt ggtgttagag tctgcatttt ttgctccatt
     2041 agcgattacc ggtcgcgctc gtcaatatgg gttacatacc gacgcatcac accgttttga
     2101 gcgtggggtt gatccagaat taactcgtca agcaatggag cgtgcaacgg cattattact
     2161 ggaaatttgc ggcggtgaag caggtgaaat tgtggaagcc gtgagccaag aaaacctacc
     2221 aaaacgcaat actgtcacgc ttagacgcag taaattagat tcggtgattg gtcatcatat
     2281 tgacgatgca acggtaaccg atattttaac ccgcttaggc ttgaacgtaa catttgcgga
     2341 taatagttgg acggcaattg ctccaagttg gcgttttgat attgaaattg aagaagattt
     2401 aattgaagaa atcgcgcgaa tttatggcta caacagtatc ccaaataatt cgccacttgc
     2461 tcatttaacg atgaaaggta cgccggaaaa attactggaa gcaaaccgta ttcgtatggc
     2521 attggtagat agtgattacc aagaagtgat tacttatagc tttgttgatc cgaaaaaaca
     2581 atcattattg cacccacagc aagaagcctt gattttacca aacccgattt caagtgaaat
     2641 gtcggcaatg cgtgtttctc ttttaaccgg tttgttggac actatcgtgt ataaccaaag
     2701 ccgtcagcaa aaccgtgtgc gtatttttga agcaggtcta cgttttattc cggatagcaa
     2761 tgcggaatca ggcgtgcgtc aagaatttgt ttttggtgcg gcgattgtag gcgataaacg
     2821 tccggtacat tgggaaaaca aatcagaagc agccgatttc tttgatttaa aaggcgatat
     2881 tgagcgtatt ctttctttaa cctctatccg ccacgatctg caatttgtcg caaaacagtt
     2941 cccagcatta cacccggggc aatcggctgc gattatgctt gatggcaaag aaattggttt
     3001 tatcggaact gttcacccgt caattgtgca aaagtttggc attaaaggca aaccgattgt
     3061 atgtgaaatt ctagcatcag ctattgcaga gcgtccggtt acacaagcgg gcgaaatttc
     3121 taaatttcct gcaaataacc gtgatattgc ggtagtggtt gatgaatctg ttcctgcagg
     3181 tgaggtgtta gaggcttgtc gtaaagctgg tggtaataaa ttagtggcag taaatttatt
     3241 tgacgtttac cgtggttcga atttagaaag tggtaagaag agtttagcca ttagcttaac
     3301 ggttcaagat aatgaaaaaa cattagaaga aaatgaaatc aatgcggtaa ttcaagcggt
     3361 attagctgaa ttagcaacac gtttcaatgc ggtacttcgt gattaatcag taaaatatgg
     3421 ctgatttatt ttatcagcca taacaataaa ctaaggataa atgatggcgc ttaccaagat
     3481 tgaaattgca gaaaacctga ttgaaaaatt tgggttagaa aagcgtgtag cgaagcaatt
     3541 tgttgaattg ttctttgaag agatccgatc ctccctcgaa aatggtgaag aagtgaaatt
     3601 atctggtttt ggtaattttt cactgagaga aaaaaaagct cgtccaggaa gaaatcctaa
     3661 aacgggggaa aatgtggctg tttcagcccg tcgagtagta gtttttaaag ctgggcaaaa
     3721 attacgagaa cgtgttgagc aagctagctc ccaatcatag gggcagttat attagttaga
     3781 tttaatgtgg agtaataaat gaaattaacc aaacggtggc tttccttagg ttgtttgtta
     3841 gctattacag cgatgttagt ggcttgttca agttcagata caacctctaa gtctcaagta
     3901 aaaagtaaag tttatcgttc aatataccaa tcagaccttt ctgatcctat tatggcaatt
     3961 agtcgattaa gtgaacatca acacgaatgg aaaggcactc gctatcgttt aggtggcaat
     4021 agcaaggctg gcatcgactg ttctggtttt atgcaagtca cttttaaaga tctttttggg
     4081 atagatttgc cgagaaccac cacagagcag gctaaggctg gtgagcgtat atccaaagac
     4141 gaattgcgta caggtgattt agtttttttc aagacagggc gtggtccaaa tgggaaacac
     4201 gttggtgttt atgtaaaaaa tgggcaattt cttcacgcct caacaaaggg aggggtgatt
     4261 tattctgatt tggattcgcc atattggtct aaggctttct ggcaggctcg tcgtttataa
     4321 tttagggtaa catacatgct gaaaaaaatc ggacaagcgg tcatatttgg acttttttgt
     4381 gcaattttaa ttttgtttgt agctccaatt attcagagta aagggagttc gttttcatta
     4441 tcagcattca ctcaaaaaga gattgtaagc tacaatgcag cggttaaaat agcctccccc
     4501 gcagtcgtta acgtatatag ccgaaatttt agttctgaaa atgaaacatt tgaagttaag
     4561 aatttaggtt cgggtgtgat tatgagtagc gatggctata ttttaactaa caggcatgtg
     4621 attgaagatg cggatcaaat cgtgattgct ttgcaaaacg gtgctatttc gactaatgta
     4681 aaattagtcg gcgatgattc tttaactgat ttagctgttt taaaaattga gggtgagaat
     4741 ttacctacta ttccacaaaa tccggagcgc aaactacaaa ttggcgatgt ggtgttggca
     4801 attggtaatc ctttgaattt aggacagagc attacgcaag ggatagtcag tgctattggg
     4861 cgaaaaacct taacagaaag tggtagacaa aattttattc agacagatgt ttccattaat
     4921 caagggaact caggtggtgc tttaattaat actgctggtg agctaatagg tattaacact
     4981 ttgcgttttg ggaaaaatac gaatgaattg tcagagggcc taaattttgc gattcccatt
     5041 aatctggcga atcaaattat gagtaagatc attaaagatg gccgagttat tcgtggctat
     5101 tttggggtaa gtacagattt gcttgacacc gcaaaaatgc aaggttatga aaaaggggtg
     5161 atcattgtta atgtagataa aaatgggcca gccgcaaaag cggggattca agcaggtgac
     5221 ttagtgctta aagtcggaga tattgaggca ttctctcctt ctcaaatgat ggaagagctt
     5281 gctgaaatga aaccttatac tacagtaaaa gtattggttc aacgtgatga acaattactt
     5341 aactttgatg taactattac tgagttacag actcaatagg gtagaaaatg aaaaaaatag
     5401 tgattacagt tgatgggccg agtggtgcag gtaaaggaac gttatgtcat gcattggctg
     5461 aaaaattagg gtttgatttt ttagattctg gagccttata ccggattact gcattaagcg
     5521 caattaaaaa agaggttccc cttgatgatg aggaaaaact agcggaagtt gggcgtaatc
     5581 ttgatattca atttttgcca gaaaatggcg agattcaggt gattttggaa ggagaaaatg
     5641 taggcgactt aatccgaacg gcagaagcag gtcaaaatgc ctctaaagtc gctgctttcc
     5701 ctttggtacg tgaagcactt ttagaacgcc aaagagcctt tagtagcgaa aaaggtctga
     5761 ttgcagatgg acgagatatg gggacagttg tgtttcctga tgcacaaatt aagctgtttt
     5821 tagatgcaag tgccgaagaa cgcacaaaaa gacgtgtaaa acagttgcaa gaaaagggat
     5881 ttaatgctaa ctttgacgag attttagccg agataaaaga acgtgatttt cgcgatagaa
     5941 atcgatcagt cgcgccactt gttccggcta aagatgcgtt gctgttagat tcaacgcatt
     6001 tatcaattga agatgtgatt aaccaagcat taaatcatat cgctcaatac attaaatttt
     6061 agtttgttgc ttcacatagg atttgtgtag cttttattat caaccccgtt taacaggacg
     6121 ttagatggat gtttattttt aagaagattt attatgtcag aattatcgtt tgctcaacta
     6181 cttgaagaat catttgcagc tacaccacgt ttaggtgatg ttgttaaagg tactgttgtt
     6241 gctatccaaa aaggcttagt tattgttgat acaggtttca aatctgaatc tgcaatcgat
     6301 gcctcagaat ttactaacgc acaaggtgaa ttagaagttc aagtgggtga tgaagtagat
     6361 gttgttctta aagctgtaga agacggtttt ggtgcaacag tagtttctcg tggtgatgca
     6421 aaacgtaacg aagcttggat tgctttagag aaagcatttg aagaacaagc tacagttatc
     6481 ggtttcgtaa atggtaaagt aaaaggcggt ttcactgttg aattaaacgg tgttcgtgca
     6541 ttcttacctg gttcattagt tgatactcgt ccggttcgtg attctttaaa cctagaaggt
     6601 aaagagtacg aattcaaagt aatcaaatta gatcaaaaac gtaacaacgt agtagtatct
     6661 cgtcgtgctg ttatcgaaac agaaagcaac caagatcgtg atgcggtatt agcaaactta
     6721 gttgaaggtt ctgaagttaa aggtacagtt aaaaacttaa ctgactacgg tgcattcgta
     6781 gatttaggtg gcgttgacgg tttattacat atcacagata tggcttggaa acgtgttaaa
     6841 cacccaagtg aagtggttaa tgtaggcgat gaagttactg ttaaagtatt aaaatttgac
     6901 aaagacaaaa ctcgtgtatc attaggctta aaacaattag gtcaagatcc ttgggctgta
     6961 attgctgaaa accacccggt aaacagcaaa ttaactggta aagtaactaa cttaactgac
     7021 tacggttgct tcgttgagat tttagacggt gttgaaggtt tagttcacgt ttcagaaatg
     7081 gattggacaa acaaaaacat tcacccatct aaagtggtta acgtaggcga tgtagttgaa
     7141 gtaatggtac ttgaagttga tgaagaacgt cgtcgtatct cattaggttt aaaacaatgc
     7201 aaagcaaacc cttgggaaca atttgcggca actcacagca aaaatgataa agtatcaggt
     7261 aaaatcaaat caattactga cttcggtatt ttcatcggtt tagaaggtgg tattgacggt
     7321 ttagttcact tatctgacat ttcttggaat gtttcaggtg aagaagcagt tcgtaactac
     7381 aaaaaaggtg atgaagtaga agctgttgtt ctacaagttg atgcagtgaa agagcgtatc
     7441 tctttaggta tcaaacaatt agaatctgat cctttcacaa actttgtaga tggtactaaa
     7501 aaaggtgcaa tcttaacagg taaagttgta gaagttgatg ctaaaggcgt taaagttgaa
     7561 ttggaaggtg gcgttgaagc atttattcgt gcaaacgaag caactgctga gcgtgtagaa
     7621 gacatcactt ctgttatttc tgttggcgat tcaatcgaag cgaaatacac cggtgttgat
     7681 cgtaaatctc gcgtagttaa cttatctgtt cgtgcaaaaa acgaagctga agaatcagca
     7741 gcaattgcac aagtgaacaa agaggaagtt gttgtaccta atgcatttgc tgaagctttc
     7801 aaagcagcta aaggcgaata attagtatag actaatctaa aatgggtatg ttttgaacat
     7861 acccatttaa acttagaaat gccattttga atacttattt tcataataaa tgattattca
     7921 aaatagaatt aatttttggt agaaataata tgactaaatc tgaattaatt gagagtttag
     7981 catctaaaaa tccaagttta ccaattaaaa tggtggagca ttgtgtaaaa gagcttttag
     8041 agcagttaac ggctacttta gaagaaggtg aaaggataga agtaagagga tttggtagtt
     8101 tttctctaca ttatcggcag ccgcgtttag gtcgcaatcc caaaacagga gaaagtgttc
     8161 ttttaggcgc gaaatatgta ccacatttta aagctggtaa agatctaaaa gagagagttg
     8221 atctgcttta agtcttatta attcaataat cgtagtaagg agattatatg attaagtata
     8281 ttttaggtat tttaattgtg attgcagtta ttattgtcgc tgttacgatt ggagccaata
     8341 atgatcaact tatcaccttt aactatattt ttgctcagag tgaattacgc ttatcaacgt
     8401 tagttgcgat tttatttggc ttaggattga ttcttggttg gttggtaacg ggtatttttt
     8461 acttaaaaat taagtttcaa aacgttgctt taaatcgtcg tgtaaagcgc caagctcagc
     8521 aaataactga attaacgact ccaaaggctg aataatcaat gcttgaatta ttgttccttt
     8581 tattgcctat tgcagcacta tatggttggt atatgggaca acgtagtgca aagaaggatc
     8641 aagaaaccgc tagtaataag ttctctcgtg agtatgttac ggggttaaat tttcttttat
     8701 ctaatcagca ggaaaaggcg gtggaccttt tcctctctat gttacaaaaa caagaatccg
     8761 aaaatcatat tgcatctgaa tcccaatttg aagcggagtt aaccctaggt aatcttttcc
     8821 gttcaagagg tgaggtagat cgtgccttac gtattcacca aacattagtg aatagccctc
     8881 attattcatt tgatcaaaaa ttattagcaa aacagcaatt agctaaagac tttatggttg
     8941 caggtttcta tgaccgtgca gaaaattatt acatttcatt agttgatgaa cctgagtttg
     9001 ctaaatattc tttatctcag cttgctgtta tttaccaaaa aaccagagaa tggaaaaaag
     9061 cgattaatgt tacagaaaaa cggcttcgaa tagagccgga tgcagataaa ataccgcttt
     9121 cacattttta ttgtgaatat gcgcaagggg ttaaatttga tgataaagcg gcatttattg
     9181 aatcgttaaa taaagcgtta gaatattatc ctcaatccac acgcgcttct ataatattag
     9241 gtgatttcta tttagaagag ggagaatatc taagagcatt aagctatttc gaacagattc
     9301 ttgtgcaaga ccctgattat attagcgaag tgcttggacg aattaagcaa agctatatgg
     9361 ctcttgagga cttaaatggc tatgagttat ttctcattcg agcaaaccga gtaaaacata
     9421 atagtagtgt agatattgct ttaactgaat ttattgaaga aaaagatggt atcaatgctg
     9481 cacattctaa actataccag cagttgagta cttatccgaa tttaattact tttcaccgct
     9541 ttattcgcta tcaagcagat tttgcggagg aaggaaatgg taaggaaagc ttagttttat
     9601 tacataatat ggtgggaaat cagataaaac gcagcttcca atatcgctgt ttaaattgtg
     9661 gttatcaaag ttatcgctta atgtggcaat gtccttcttg taatcaatgg gaaaaaatta
     9721 agccggtaca aagtatcgaa ggtattattc aataaagaaa gaatctgagg aattgaaaat
     9781 gaacaataaa gtaattgttg cgttagacta tgaaactgaa cgtgaagcat tagaatttgt
     9841 ggatttggtc gatccgtcgc tttgtcgttt aaaagtaggc aaagaaatgt ttacaacctt
     9901 aggcacaaat tttgtcaaac aattacacga acgtaaattt gatgtattcc ttgatttaaa
     9961 atatcatgat attccaaata cggttgctcg agcagtacgt tctgctgctg atcttggtgt
    10021 gtggatggtt gacttgcatg cttctggtgg tttagccatg atggaagagg caaagaaaat
    10081 tttggagcct tatggcaaag aggcaccatt attaattgca gtgacggttc taaccagtat
    10141 ggaagatttg gatttgcttc aaataggtat taatgcttcg ccgatggaac aagttattcg
    10201 tttagcacat ttagcacaac gggctggttt agatggcgtg gtatgttctc cacaagaagt
    10261 tgaggtatta cgtacccatt gtggtcaaga ttttaaatta gtgaccccag gaatccggcc
    10321 aaaaggaaca gattttgggg atcaacgccg agtgatgaca cccaaacaag cagtagaaac
    10381 aggctcagat tttttggtta ttggtcgtcc tattacccaa gctcaagatc cgcttgcggt
    10441 attaaaatct attaaccaat ctatcagtta attcattgca tttttaatga aggcggaaaa
    10501 atttccgcct tttttaatca aacaagcggt tatttttgag gaaaaatttg taaatgacat
    10561 tagtctattc aacggaaaca ggcagaataa agtccgaagt aataaaagaa gaacgcccta
    10621 aaggggatgg tattgtgcgt attcaacgtc aaacaagcgg tagaaagggg aaaggtgttt
    10681 gccttatcac cggtcttgat ttagaggata aagccttaaa ttctcttgct tcagagctta
    10741 aacgtaaatt gggttgtggt ggctcattta aagatggagt aattgaaatc cagggcgata
    10801 atcgaggatt cattaagcaa atcttagaac agaaaggttt caaagtgaaa ctggcaggtg
    10861 gttgagtttt aaacaattat cagctggcag tttttaaata acttcatttt atttgaaact
    10921 tcattcctac ttttctgcct aaaactcacg attaaggaga aaaactaatg tggaagaaaa
    10981 cgttgattgc tgtattttta gcaagccaat atgcttttgc ggtaggaacc gggaaagaac
    11041 catcaaaaag ttatactgaa acagaattaa aacaattaaa aaatgattgg ttagcgattt
    11101 atcaaaaaga gctacagtat gcagaaaatt tgcgtttaaa acagagagaa aattttcagc
    11161 aaattaatta tttggcagat gcagcgatta gtcagaagaa tttatcactt tcaacggagc
    11221 agataattca gcgtttatta ctaaccttag cgggttatcc gttggagatg aaagctgaat
    11281 ggaagctgct aaatgctaaa ataacgttaa aacaagccac agaaagtgaa gttaaagcat
    11341 ttatttcaaa atatcctgat tctttgtatc aaaggcagtt acagaacttg atgtttgagc
    11401 tgctctatcg tgaacagaaa tttccggagt tactggaata tgctcaaaat gtaaaacaga
    11461 gtagtcttgc cgaccaatgc cgtttatttt ctgctcgtta tgaactggca gcaagtaaag
    11521 ctcaaatcaa tccggaagtt tctcaagtaa ctgagcaaaa agcagaaaat gcagaactgc
    11581 ttgctttggt gcaagagttt gatcgctttt ggcttgctac gccgaaatta acttctgatt
    11641 gtgcgaattt agaaagttat tggcgggatc aggggcttaa aaccgatgaa aaaatgcgtt
    11701 tgaaagcggt cgaattaatt aaacaaaatg caaatgcaga attggcgaat ttggcggcaa
    11761 atgtaaataa tgagaatttg aaaatctggc tatcttccgt tgaaaaggta gcgaataatc
    11821 cggcagattt gcaaaatttt atcgaaaatc aaccgcttga ttccccattt tatgctgata
    11881 ataaagcgat tattcagcaa ctctttgcta aatatgtgcg aactttatcg gaaaatatgg
    11941 agaacccgag tttccagcag tatcaaacgt gggcagagaa gtatcaactt tccagcgagg
    12001 aaatcaatgg ctggaaaaat gcttttatca ctcgattttt tgataaccca gaaccaacat
    12061 tccaattttg gcgtgatgag caaatcaagt tgctcaagac agacaattta actgaacgcc
    12121 gtttacgaat ggcaatttgg caaaaagcag atttaaatga gtggctggtt ctgctatctc
    12181 agcaggcgaa agaaaaagca gaatggcgtt attgggctgc gaaagaggag aaaaacgaag
    12241 cgaagcgtaa agttgatttt gaaagcttag ctaaagagag aggcttttat gctatgttgg
    12301 ctgctcaaca attaggcatt gtttaccaaa tcccgatgct tgaagtgcct gaattgacac
    12361 aagcacagct tgaattgtat gcaaaccaat tagctcgtat tcaagagttg cgagagctag
    12421 ggcagtttga ccaggcaaga aaaatatgga ttgactggat aaaaaacatc aagccggaag
    12481 caggtgaaaa tacaccaact aaaatccagt tagccctgat aaaatatgcc aaggataaaa
    12541 attggtatga tttggcggtg gaaggtacaa ttcaaacaaa agcctttgat tatcttgatt
    12601 tgcgattacc gaatgcctat tcggattggt tcgatttaca tctgcaagat aaaaaaatca
    12661 gcaaaacgtt tgctcaggcg attgctcgtc aagaaagtgc gtggaatgct caggctcaat
    12721 cgcacgctaa tgcgagaggg ctaatgcaac tgttaccgac aacagcacaa aaaaccgcta
    12781 aagataacgg tttaaccttc aaagatggca atgatctctt tcaaccgttt aacaatatta
    12841 tgttaggcac aacccattta atggagttaa acgaaaaata tccgaataat cggattctga
    12901 ttgcctctgc ttataatgca ggagcagggc gtgttgagca gtggctgaaa cgtagtaacg
    12961 ggcagttagc aatggatgaa tttattgcca gtatcccgtt ttatgaaacc agaggctatg
    13021 tacaaaatgt gctggcgtat gactactatt atcaaatgct ctatagcgat ataaatgata
    13081 aaaatggatt aaaaatgttc tatcaagagg aattaacaag aaaatattaa aaaatgcttg
    13141 tgtttttgtg tagaaccgct ataatgcacc ccatcagacg cggggtggag cagcttggta
    13201 gctcgtcggg ctcataaccc gaaggtcgtt ggttcaaatc cggcccccgc aaccagtttt
    13261 aagctcacag ctttggttaa agttgtgagt tttgttttat atgctgtagc aaatttgcaa
    13321 aaaatttggc aaaaaagacc gcttgttgtg gttgctacag caaaaaacaa accgcttaaa
    13381 gccccacggt ttcccgtctg gggctttttt gcggaaattg gtacagcatt aacgtatcaa
    13441 agctggttta tccggctttt tttatatttg gagattatga cttggcaact ttagaacaaa
    13501 aattagaaga tttagtgctc gattctattg aagcattagg ctttgaatta gtcggcattg
    13561 aatgccaacg tgcaggccgt tttttaacgg tgcgtttata tattgataaa gaaggtggcg
    13621 tgacgattga tgattgtagc gatgtcagcc gccaagtgag tgcgattttt gatgtggaag
    13681 atccgattgc cgataaatat aacttagagg tttcttcacc agggttagat cgtccattat
    13741 ttaccgttgc ccactatgag cgttttatcg ggcaagatgt agtgattcat ttacgcattc
    13801 cgatgttcga tcgccgtaaa tggcaaggta aaatcaaaca agtagaaggt gatttcatca
    13861 ctttaacggt agaaaatgaa gatcgccagt tcgcatttgg caatattcaa aaagcaaatt
    13921 tagttccggt ttttaatttt taagataaag gtaaactgac aaaatgagta aagagatttt
    13981 attagctgcg gaagcagttt caaacgaaaa gcaattacca aaagaggcaa tttttgaagc
    14041 cttagaaacc gctttaacca ttgcaaccaa aaagagccgt gatttagata ttgacgtgcg
    14101 tgtggtggta gatcgtaaaa ccggtgattt ccaaactttc cgtcgttggg ctgtggttga
    14161 aaatgtgaat aatatgaccc gtgaaatcag cttagaagcg gcacaatttg aagatccaaa
    14221 cgtacaatta ggcgatttta ttgaagatga agtagagtct atcgagttcg gtcgtgtggc
    14281 gattcagact tttggtcagg tagtcaaaac caaaattcgt gaagcggaga agacgaaaat
    14341 cattgatgaa ttccgttcgg atttaggcaa aattattctt gccactgtga aaaaagtaac
    14401 ccgtgataat attttccttg agttacaagg taaatcagaa gatatcaaag gcgaagcggt
    14461 cattgtgcgt gaagatatga tcccacgtga aaacttccgc ccgggtgacc gtgtgcgtgg
    14521 tgtgttatac gaaatcaagc ctgaatcaaa aggacctcag cttttcgtta cccgtgctaa
    14581 accggtgatg ttagaagagc tattcaaatt ggaagtgcct gaaattggcg aaggcgtaat
    14641 tgagatcaaa ggttcagccc gtgatgtcgg ctctcgtgca aaaattgccg tgaaaaccca
    14701 cgataaacgt attgacccgg taggggcttg tgtgggtatg cgtggtgctc gtgttcaagc
    14761 tatcagcaat gaattaggcg gcgagcgtgt ggatatcgta ctttgggacg aaaatccggc
    14821 tcaatttgtg attaatgcaa tggctccggc agatgtaagc tctattgtga ttaacgatga
    14881 aactcactca atggatattg cggttgaagc gaaaaatctg gctcaagcta tcggtcgtaa
    14941 cggtcaaaac gtgcgtttgg cgacacaatt aactggttgg gcattaaatg taatgaccgt
    15001 tgaagagcta acgaagaaga gcgaagaaga agatggtaaa gtcatcaatt tattaacttc
    15061 tgctttagaa attgatgaag aatttgctca agttttaatt gaagagggct ttacgtctct
    15121 tgaagcgatt gcttatgtgc cggttgatac tttaacggcg attgacggtt tagaagatga
    15181 agatttagtc gaagaattac aatctcgtgc caaaaatgcg atcacgaaaa aagcgttaga
    15241 agaagagaag ttattaaaat cagctcaaat tgaagaaaaa ttattaacgc ttgaaggtat
    15301 ggatcgccat atcgcattca aattagctga aaaacagatt acgactcttg aagaacttgc
    15361 agagcaaggt gttgatgatt tagccgatat tgaagaactt tcagaagaga aagctggcga
    15421 gctaattatg gcagcacgcc aaatttgttg gttcaactaa gcaaagagga taataaaatg
    15481 acagaagaga aaaaaacact ttcgcttggt ggcgctcgca aagcgagtaa agtgaataca
    15541 accacaacca gtggtaaagt aaaagcggtt gaagtaaaag agaaaaaacc gaaaattgat
    15601 gcaaaagcat tgcaagaaaa agcagcaaaa gaagctgccg cagcgaaagc tagagctgaa
    15661 aaagaagcag ctgaaaagtt agccaaagaa aaagccgaag ctgaagctaa agagaaagct
    15721 gcaaaaaaag cagcagaatc gaccgctagt aaaccgattt ctgtgccggt aatgccaagc
    15781 agcaaagcaa aagaagaaaa accgaaagca caacaggtac agccaaaaca agagaaagcg
    15841 gttgatcctg aaaaagaagc taaacgcaaa gaagaagctg agttacgccg taagcaagag
    15901 gaattagctc agcaaaaagc ggaaatggag gcaaaacgtg ctgcagaaaa tgcccgccgt
    15961 ttagcagaaa ttgctcgtga agaagcggaa gataacggca acgaagattt tgatgatgag
    16021 cgttttactt cttcttatgc tagagaggct gagcgtgata atgaccgccg tagtgaggga
    16081 aatcgtggtc gtaacggcaa aggcaatgtg gctaaagcga aaaaaggcgg acgtgaagag
    16141 gataaaaacg aacgcagtgc agatcgtcgc aaccataaag aagtaaaagg caaaggtaaa
    16201 caaggtaaga aaggtgcagc tttacaacaa gcctttacca aaccagctca agttgttaaa
    16261 gctgatgtgg tgattggtga aactatcact gtggctgaat tggctaataa aatggcagtg
    16321 aaagcgactg aaatcatcaa aatgatgatg aaaatgggtg aaatggtgac gatcaaccaa
    16381 gttatcgacc aagaaaccgc acaattagtg gcggaagaac ttgggcataa agtgattttg
    16441 cgtaaagaaa atgagttaga agaagcggtt ttagaagatc gtgatactca cgcagaaaaa
    16501 gtaacccgtg caccggtagt gactattatg ggccacgttg accacggtaa aacctcgtta
    16561 cttgactaca ttcgtaaagc caaagtggcg gcaggtgaag caggtggtat tacccagcac
    16621 attggtgcat accacgttga aaccgatgac ggcaagatga tcactttctt agataccccg
    16681 gggcatgcag cctttacctc aatgcgtgcg cgtggtgcga aagcaactga catcgttgtt
    16741 ctcgtcgttg cggctgatga cggtgtaatg ccacaaacta ttgaagctat ccagcacgcc
    16801 aaagcagcgg gtgcgccatt agtggtagcg gtgaataaaa ttgataaacc ggaagcgaac
    16861 cctgaccgtg tagaacaaga gttactacaa cacgaggtta tttctgagaa attcggtggc
    16921 gatgtgcaat tcgtgccggt atctgcgaaa aaaggtatgg ggatcgatga tttactagaa
    16981 gccattattc tgcaatccga agtgcttgaa ttaaccgcag taaaagacgg tatggcaagc
    17041 ggcgtggtaa tcgaatctta cttagataaa ggtcgtggcc ctgtggcaac tatcttggtt
    17101 caatccggta cgctaaacaa aggcgacatt gttctatgtg gttttgaata cggacgtgtg
    17161 cgtgcaatgc gtgatgaaaa cggtaaagat gttgaatcag caggtccgtc tattccggta
    17221 gaagtattag gcttatcagg cgtgcctgct gccggtgatg aggcaaccgt cgtgcgtgat
    17281 gagaagaaag cccgagaagt ggctctttat cgccaaggta aattccgtga agtaaaactg
    17341 gctcgtcagc aaaaagctaa actggaaaat atgttcagta atatggcagc cggtgatgtg
    17401 gcagaattga acatcattgt taaagcagac gtacaaggct cggtagaagc gatcagccaa
    17461 tccttaatgg aactttcaac cgatgaggtg aaagtgaaaa ttgttggttc aggtgtaggt
    17521 ggtattaccg aaactgatgc aaccttagcc gcagcttcta atgctattat ggtcggcttt
    17581 aacgtgcgtg ccgatgcctc tgcccgccgt gtgattgaaa acgaaaatat cgatttacgt
    17641 tactactcca tcatttatga gctattaaat gacgtgaaag cagcaatgag cggtatgtta
    17701 cagcctgaat tcaaacaaga aattatcggc ttggcagaag tgcgcgatgt gttccgccac
    17761 ccgaaatttg gggcgattgc cggttgtatg gtgacagaag gtatcgttaa acgtaacaac
    17821 ccaatccgtg ttctgcgtga taacgtagta atttttgaag gcgagttaga atctctccgc
    17881 cgtttcaaag atgacgtatc tgaggtgcgt aacggtatgg aatgtggtat cggcgttaaa
    17941 aactacaacg acgtaaaagt tggcgaccaa atcgaagtgt ttgaagtggt tgaagtaaaa
    18001 cgtactattt agcctaattt tgtgtagggg cgtattgcat acgccctttg tattttttag
    18061 ggcgtgaagc atcacgcccc tataaaagag aaaaatatgt ccagagaatt taaacgtagt
    18121 gaccgtgtgg cacaggagct acaaaaagaa gtggcggtga ttttacaacg tgaggtaaaa
    18181 gatcctcgca ttggtatggt gactgtttct gatgtggaag tatcaagaga tttggcgtat
    18241 gccaaaattt ttgtgacttt cttatttgat aacgatgctg aagctattaa gcaaggtatg
    18301 caaggcttgg agaaagcaag cccctatatt cgaacccttt taggtaaagc aatgcgtttg
    18361 cgtattgtgc ctgaactgcg ttttatctac gatgaatcgc tagtcgaagg tatgcgtatg
    18421 tctaaccttg tgtctagtgt aatcaaaaat gacgaagaaa aacataaaga ggactaattg
    18481 tgtctagacc tcgcaaacgt ggccgtgata ttcacggcgt tttcttatta gataaaccac
    18541 aaggaatgtc ttcaaacgat attctgcaaa aggtaaagcg aattttccaa gcaaataaag
    18601 ccggacatac cggggcgtta gaccctctcg caaccggaat gctgccgatc tgtttaggtg
    18661 aagcgaccaa attttcgcaa tttttgttgg attcggataa acgttatctc gtcaccgcaa
    18721 aattaggcga gcgaaccgat acttcagatg cggaagggca agtggtggaa accaaagcag
    18781 ttgcagtgac aaaatctcaa attttggctg ctttggagaa atttagaggt gatattttgc
    18841 aagtgccgac aatgttttcg gccttaaaac acaacggcaa acccttgtat gaatatgccc
    18901 gagcagggat tacggtggag cgtgaggctc gcccgattac gatttttgaa ctaaatttca
    18961 ttgaatacaa ggctccattt ttaacccttg aggtgcattg ttctaaaggt acttatatcc
    19021 gaactttggt cgatgattta ggcgaagagt tgggctgtgg tgcacacgtt acgatgctac
    19081 gccgtacagc agtggcagat tatccgattg aaaaaatgat gagctatgca gatttgcaaa
    19141 atttagccga aaatcaaccg cttgcagagt tagaccagca cttattgccg atggatacgg
    19201 cagtttctgc attagcaaaa ataaatttaa gttcagagca aactaaagcg gtgggttttg
    19261 gtcagagaat tagatttgat aatctgaacc aactttatgg tttggtacgt ttatattcag
    19321 aagatgaaca atttctcggt gtggcagaaa tcaccaatga tactgtgatt cgtcctaacc
    19381 gaatgattaa cttaacggaa taagaatgaa atcgataatt tttaccttac ctttagcgat
    19441 tatcacttta gccttagccg gttgttcaag tgataatcaa gaaagttatg ccggcttaaa
    19501 cttagatgct aaatacagta aatctcgctc ggtcagtcat tttaatgatt atgtgcattt
    19561 tctgaaacag aaggcagcag gggcaggagt gtctgcaaaa accttaaatg ctcagaaatt
    19621 cattcattac aacgccagag cggtgcagtt agatcaacag caagctgcac gaagacgtga
    19681 cccgaatgta ccgcctccgc caccaaatcc aagttttaaa caaagtatta actcaagcga
    19741 aggtggatca ggcaagtgaa cgttggtatg aatataatag ccagcttacc catgccagcc
    19801 aaaaatatgg ggtacaaaaa gagtatattt tggcactttg gggaatggag agcagctttg
    19861 ggcgtaacca aggggatttt gatgtacttt cggtgttggc aaccctcgcc tttgatggtc
    19921 gccgtgagaa gttatttacg caagaatttg tgaatgcgat gaaaatgctc gatgacggca
    19981 caattaaacg ctatgaattg cttggatctt gggcaggagc gatgggacaa actcaattta
    20041 tgccaacttc ttacttaacc tatgcagctg atggcaataa tgacggtaaa aaagatattt
    20101 gggagaatga agccgatgca tttgcctcga ttgccaatta tctttcaaca gtaggttggg
    20161 ataatcaact accttggggt gttgaggtta aattagcttc accgatggat ttaagtttcg
    20221 ccggtcttga aaccaacaaa gcgaaaacat tggcggaatg gcaagcctta ggtatttatt
    20281 tagcttatcc gaatggacaa gaatcggcaa aattagctca attacacggc aaagaggttt
    20341 ggttgattcg tccggataaa gaagcgggaa gagcgttttt agtttctaat aatttccgta
    20401 ctttaatgga ttggaataaa tcgaataacc ttggtatcag tatcggaaaa tttgccgatc
    20461 gaattttagc ttcagttggt caataatcga ataaaagcat agtagcaaag cctatctatg
    20521 cttttatttt atcaaagcgt cgcctttctt ctgcaaacga cgttgcttaa aaaaatcact
    20581 gatcttttgg ctacattctc tgcccaatac attgccatgc acttctaaga aatggttcat
    20641 tttataatct tcaaacagat gatagcgtga acctaccgca cctgttttat aatcacttgc
    20701 cccaaaaacc aatcgcttaa tccgactatg taaaattgca ccggcacaca ttgggcaagg
    20761 ctcgagcgta acataaaggg tacaatctaa cagacggtaa ttccctaaag tttgtcctgc
    20821 ttgacgaatt gcctgcattt cagcgtgtgc agatggatca cagagttgaa tggtttggtt
    20881 ccagcctctg ccgataatct gttggttttt atcaaccagt actgccccaa ccgggatttc
    20941 gccttttgct tcggctaaat cagcgagatc aagggcgtat tgcataaagg cgatgtcttg
    21001 ctcggagatc tgaagtggac aagaagtttg atttggtttg ataaacatag ttgcaaaaaa
    21061 ttgagttttt ttgaccgctt gtaaaatgcc ccacgagggt ggggcatcgc ttacttcgct
    21121 tagtgtcgtt tagtcacgac gaccacgttt ttcactgaaa cgtttttctt taaagccacc
    21181 tttgcggtct ttattgaaac ccccgtctcg gcgaccacca cgatcattac gatcgttacc
    21241 acggcgacca cgaccttcaa atggatttgc attacttgca ctgtttgcag agccaagtaa
    21301 tgtcatctgc attggtttgc ttaatacacg tgctttgtga gcgaaatgtt gtacgagatg
    21361 atttggcatt ccttgcggca actcaatggt tgagtattta tcataaagtt tgatatgccc
    21421 gatgtaacgg ctgctgatat ccccctcgtt ggcaatcgct ccaacaatat gacgaacttc
    21481 cacaccgtct tcacgcccca attcaatgcg gtataaatcc attgccacac cattgttttc
    21541 acggtgttca cgaccgttac gacgatcgtt tcgctcattg cggtcacgtc cacgttcaga
    21601 acgggcagca cgcacaaccg gatccggtgg cagaatcagt ttttgttttt cttgcagtaa
    21661 catcatcatc gccgctgcta attcttcgtg gtcttgatcc gcagtaaata aatcttccaa
    21721 caattcacga tatttttcta aatcgtgatg ttctaactgc ttagaaatgc gggctttgaa
    21781 tttctcacgg cgtttttcca ttaaaatttc gtggtttgga atcgccactt cattaattgg
    21841 ttttttgatt aaattttcga tattgcgtaa taagcggcgt tcacgaggct caacaaacag
    21901 taaggcacga cctgaacgac cggcacgacc ggtacgtccg atgcggtgaa cataagattc
    21961 ttcttctaac ggaatatcgt agttaataac caagctgatt cgctcaatat caataccacg
    22021 ggcagcaaca tcggtggcga ctaaaatatc taaacgaccg gagcgtaatt tatctaaggt
    22081 ttgctcacgg gcttgctggg tcatatcgcc gtttaatgcc gcagtacggt agccgttgcg
    22141 ttcacacaat tcggtaatat caatagtacc ggttttggtg cgggtaaaga tgatagcagc
    22201 atcaaattct tctacttcta ggaaacgcaa taacgcatcg tttttacgga agccgtttac
    22261 cagccagtag ctttgttcaa tatccggggc tgaacgctcg gttgccttaa tttttacctc
    22321 ttgcggatct ttcataaaac gacgggtaat acggcgaatc ggctccggca tggtggcaga
    22381 gaagagagca gtttgatgtg tttccggtaa ttcagccatt accgtttcaa catcgtcaat
    22441 aaagcccata cgcagcattt catcggcttc atctaacacg atgaatttta attcggataa
    22501 atctaatgtg ccacggcgga tatggtcaag aatacgccca ggtgtaccca ctactacttg
    22561 tgagccttgt tttaaagcac gtaattgaat gtcgtaacgt tgtccaccat aaaccgtcac
    22621 tacacgaatg cctttcatat tttttgcaaa ctgctcacaa gcatcggcta cttgaatcgc
    22681 aagctcacgg gtgggtgcca tcaccaacat ttgcgggtgg cgttgtgttg ggtcaatttg
    22741 tgccaacagc ggcagcgaga atgcggcggt tttaccgctc ccggtttgtg ccataccaag
    22801 cacatcacga ccggctaata aatgaggaat acattcttgt tgaatgggtg atgggtttac
    22861 aaagcccatt tcatttacag catcaaggat tggttgaggt aagcctaaat cggcgaaagt
    22921 taaagattca gttgtcataa aaaaccattt gtttggaacg cacaaagcag aaaatatcga
    22981 ctatttttct gcacagccat taatgaaaat tatattgttg aaatttagga agaaatgaaa
    23041 taacaaagca agtgatgctt taaaaatccc ctgagtataa gcggttaaat ttacaaaatt
    23101 ttttgcgaaa ttaaccgctt gtattgtcct aatctttccc tattctttat caacaacggg
    23161 agtcgtttga gtcataccac gaatttgtga taactcaaac agggcaaaac gatactcaac
    23221 gaagttaaac acttgatttg caagagcaag acgaaagagg ctgattgcct catctttatg
    23281 atctaatttg agttgttgtt ttgctaagta gaaatacgtt tctgtcagta tttctgcata
    23341 ttgtgagcta ttttccttag cgtcacgttc cattatagca cgaacttgag ctaaattgag
    23401 cttccctaaa aaataattta cgatatttgt tccccagtaa tccgaagaaa gattattagc
    23461 tcgcttttgt aaattatttt tagcttctgt tggtgtaaat tccagctcat taaaatagag
    23521 ccataatgct cgataaggat ctttcttatc ttcttcataa aaatggagaa gatcacgctg
    23581 ggcttcagaa tatctgccgc tataatagaa agccaaacct cgattgagat aggtgtagct
    23641 atattcccga tctaattcca atacggcatt aaacgcatca atcgaactgt cgtaatcgcc
    23701 ttccagcagc agatacagcc ccatatagtt ataagctgcc gccatacgtt gattgagcga
    23761 aatggcttga gcaaaatcat aacgggctaa cgaccataaa cctaaactgt cgtaaataac
    23821 gcctctttca aaatagaggt ctgcttgctc agagggcgtt aatggggctt cttccaatac
    23881 ttggctgagt cttaccacca ttgcctcttg ttcaaagcga agttgaggat taagttctgc
    23941 caatgctaag tttttaattg aaaccaaatc ggcataccga ctggtacagc cgcttagcat
    24001 taaaacagaa attaaattca gtaataagaa acggattcga aacaacttaa aaagttgtac
    24061 cattacagca tatccctcaa ttaaggaaaa ttaaaaactg aataacggac actcaaagtc
    24121 cgttattcgc ctttattatt gaactagaaa ttattttctt gttctgtttc taccacattt
    24181 tcagctacag tttcttctgc atttgcctcg ttggtattat tgatgtcttt catcgtcaga
    24241 cgaatgcgtc cttgacggtc aatttctacc actttcactt gtacttcttg accaacggtt
    24301 aagtagtccg ctacacgctc aacacgttcg ttggtgattt gtgaaatgtg gactaaacct
    24361 tctttgccac ctaagatgga aacgaatgca ccgaagtcca ccacacgggt tactttaccg
    24421 ttgtagattt ggtttacttc cacttcggca acgatctctt caatacgagc cattactgct
    24481 ttcgctgcat tgccgtcagt tgccgcaatt ttcaccgtac cgtcatcatc aatgtcgata
    24541 gaagtattgg tctcttcggt taaagcacga attgttgcac cgcctttacc aatcacatct
    24601 ttgattttct tcggatcgat cttcattgtg tgaatgcgtg gggcatagtc agaaatatct
    24661 gcacgaggtg ccggaatggc ttgttccatt acacctaaaa tgtgcattct tgcaccttta
    24721 gcttggttta aggcaatacg cataatttca ggggtgatcc cttcgatttt gatgtccatt
    24781 tgcagcgcag tcacaccggt acgggttccc gctactttaa agtccatatc gcctaagtgg
    24841 tcttcatcac ctaagatgtc agaaagtacc acgaatttct cgtcttcttt cacgagcccc
    24901 attgcgatac cggcaaccgc tgctttgatt ggcacacctg cgtccatcaa cgcaagagac
    24961 gcaccacaca cagatgccat tgaagaagaa ccgttagatt cagtgatttc agacaccaca
    25021 cgcactacat acgggaactc ttcagcggtt ggcatcacgg ctaatacgcc acgttttgct
    25081 aaacgaccgt gaccgatttc acggcgtttt ggcgagccga tacgaccggt ttcgcccaca
    25141 gagtatggag ggaaattgta gtggaataag aaacggtcag atttttcgcc ggtcaattcg
    25201 tcaatgattt gggcatcacg ctctgtgccc aatgttgcta ctgctaatgc ttgggtttcg
    25261 ccacgggtga aaagagcaga accgtgggtg cgtggtaaca cactggtgca aatatccaat
    25321 gcacgcacgg tatccaccgt acggccgtca atgcgtggtt cgcctgcaat aatacggcta
    25381 cgcacgattt ggctctctaa tgcggtgatg atgtcgatga tagtcccttc agaaacagtt
    25441 tcatcttctg cggtaagttg tgcaatcacc tctgctttaa tcgcatcgat ttgctcgtaa
    25501 cgaacttgtt tttctacgat acgataagca tcgccaaggc gtgtttctgc taatgctttt
    25561 actttgttga ttaaatctgt atttggctct ggtgcaaccc aatcccaacg tggtttgccc
    25621 gcttctttaa caaattcttt gatgttttcg attacaacct gttgttgctc gtggccgaac
    25681 accaccgccg ctaacatttg ctcttcggtt aagatatccg cttcagattc caccatcaac
    25741 acggctttgt ctgtacctga aaccactaaa tctaagcggc tgattttttg ctcgctggtg
    25801 gttgggttta atacgaattg atcgttgata aaaccgacac gagccgcacc gattggaccg
    25861 ttaaacggca cgccggataa tgaaagggca gccgatgcac cgatcatcgc aaccagatca
    25921 ggactgattt gtgggtttac cgatactacg gtcgcaatca cttgaatttc gttaaagaaa
    25981 ccttctggga aaagtggacg cacaggacgg tcgatcaagc gagcgattaa ggtttcacct
    26041 tcgctaggac gtccttcacg tttgaagaaa ccgcccggaa tacgaccggc tgcgtaagta
    26101 cgctcttgat aatctacggt taatgggaag aaatcttgcc cttcttttac gtcttttttc
    26161 gctactacgg taacaaatac ggttgtgtcg tccatacttg ccattactgc tgccgttgct
    26221 tggcgtgcga tagcaccggt ttctaaggtc acggtgtgct gaccgtattt aaactgtttt
    26281 acaattggag tcattgaaat tttcctttta aagaatttac tattattgtc gttttatttc
    26341 tctaaattgc gactagcaaa aaggctttta agtaaaacat ttttgatagc cgcctctcaa
    26401 taacaagaaa taaaacttgt ctagtatagc gtgattttta taaaaaatcg cctattattt
    26461 tgatcttgca cctcagttat aaagaaattc aaaacttcag tgtaaaatgg ggattagttt
    26521 gtgaaaagcc ttgtgaaaat agtttgattg catcgctatt tttttattag aggtagttta
    26581 aaactaaatc tgcttccttt accggcttca ctttcaattt ccagtgtgga atggtgctgt
    26641 tcaagagcgt gtttgacaat agccagacct aaaccgctac cgccggtttt gttgctacga
    26701 gattcgtcca cacgatagaa acgttctgtc agatgggtaa tatgatgggc atcgatacca
    26761 ataccgtcat cttgcacgct gaaaatcgca gtattcggct cttgattatc acgttgacaa
    26821 catatttgaa tggtaactcc ttcaccggcg tgccgtattg cattgtaaat taaatttgat
    26881 acagcgcttt ggagttgctc ttgatctccc cataccgtta aattaggctc aatatcaaac
    26941 agtatttgct gattttggct taaaatctcg gtattttttt gtatggcgga gattaacgcc
    27001 gacatctgga cctcattgtg ttcggaatca ttggaatgct cgattttaac caaaagtgag
    27061 agttggcgaa gcaggttagt catacgttga ctttgctctt tcatcgcatt gagcgctttt
    27121 tgctgtaatg ccatattatg cggctcgttt tccagcattt ccaaataacc ttgtaatatg
    27181 gtaagaggtg ttcgcagttc gtggttcata tttgccaaaa aggtttgtcg tgagtgcata
    27241 aggcggacaa aagaggttac atctcgtgcg acaataagtc tggagttact gtcatatcga
    27301 ttgagattca attcaatata gcgtttatta tgagtcagca gtaccaatgg gcgatggtgt
    27361 cgttgttggc ggaaatagct tttaaattca ggataaaaaa tcacattaaa aatgctttta
    27421 tttgattttt tgtcccaata aaactcaaat agctcttgtg caacattatt gcaccaagaa
    27481 atctccccgt tttcttggca aataatgatc gcatcgggta agtattgaat atgcttattt
    27541 aattttgata acagacgtaa ggttttgatt ttatcttggc gtaaacgttc gtgatagaat
    27601 gcggcacttt gagataaatg ctccattgtc gttacttttg acctgccgct ttgctcatta
    27661 ggtctgagta actgaaggag agaagattcg gtgtggtgat gccaaataag tagaaccagt
    27721 aaacaaaaac taaaccagaa aaaataagca gggaaaaaca gattgaatac gccggcaacg
    27781 gctgctgcca gcaaaagttc caataaaaag tgtttaagtg agagcttaac tttcattatt
    27841 agtcctgaaa atggttggaa aaacggtatc ccgagccacg tacggtttga atataacgct
    27901 caaaaccata gggttcaaga ctcttacgca atcgccgaat ataagagtct accgtgcgat
    27961 cctcaacata aatatcatta ccccaaataa aatcaagcaa ctgttcacga cgatacactt
    28021 tttcagggtg agtcattaaa aagtgaagca gtttatattc cgtgccgctt aatttcactt
    28081 cctgttcggc aaccaaaacc cgttgtgcct gttgatcaag aatcaatccg tctatattga
    28141 tgagattgct tggcggatca tagcttcgcc gccatactgc ttcaatccgg gcaagcaaca
    28201 cctgtggtga aaacggtttg gtaatgtagt cgtctgcacc ggcattcaga ccggtaatac
    28261 agtcttcttc gctactgcgg gctgttagca taatgattgg aattttttcg gtttcaggct
    28321 gtttttttag gtatttaatt aaatggatac ccgaacgccc cggcatcatc caatccagta
    28381 aaataagctc gggtttttcg cccagtttat tgatagcact ttggtagtct tccgcttcaa
    28441 ttacctgata ttgtttgctg agatagagac ttagcatttc acgaatagca cgttcgtctt
    28501 caacgatcag aattttgtta ttcattcttc ctctccgatg cggtgtgaca agcggtcgat
    28561 ttatcgcaga aatttgcaaa ttttttacta aaaccgaccg cttgcagatt accccatttt
    28621 acctttaatg taatcttccg tctgccggaa ttttggtttg tcgaaaattt gtttggtatc
    28681 accgaattca atcagctcgc ctagatacat ataagcggta tagtcagaac agcgggctgc
    28741 ttgctgcata ttgtgggtaa ctatcgctac cgtgtagtcg tgcttgagtt cgttgataag
    28801 ttcttcgatt ttcatagtcg aaatcgggtc aagtgcggag cagggctcat ccagcagtaa
    28861 cacctcgggt ttcactgcaa tacctcgtgc aatacagagc cgttgctgtt gcccgccgga
    28921 gagactgtca ccattttggt ttaatttatg ctttacctca ttccataaag ccgctttggt
    28981 taatgcccac tctacacgat cgtttagctc ggatttcggc aatttttcaa acagacgaat
    29041 accaaaagca acattatcgt aaatggacat cgggaatggg gtcggttttt ggaaaaccat
    29101 accgactttg gctcgaataa tcgaaatatc cgtatcggag gtgagtagat tctctccatc
    29161 aagattgatt tcccccgttg cacgttgatt cgggtagagc tcaaacattc ggtttagggt
    29221 tcgcagtaat gttgattttc cacaaccgga aggaccgata aatgcggtca ctttattttt
    29281 ggcaatacgc atattgatat ttttcagagc gtggaaatcg ccataataaa aattgaggtt
    29341 gttaatatgt aattttgtct ctaaatccgt tggtaacata tagagtcctt attttgtttt
    29401 gctgaaatac agacgagtga tgatattaag agaaagcaca aacagagtaa taagcattgc
    29461 acctgcccaa gccaatgtat tccagtcagc gaacgggctg gctgcgtatt gataaatcac
    29521 cacagggagg tttgccattg gtgcattcat atctaaagag gcaaactggt tggataatgc
    29581 ggtaaacaat agcggtgcgg tttctccgga aatacgggca acagcgagca acacgccggt
    29641 aataatgccg gagcgggcgg cacgataaga gatcattgta attaccctcc atcgtgggca
    29701 gccgagagcc gcagctgctt cacgcagatt attaggcaca agattgagca tactgtcggt
    29761 agttcgaaca acaatcggaa tcactaatac cgccaatgct aatgagcctg cccagcctga
    29821 atagtgttta acctgtgcga cataaatcgc ataaataaat aagccgataa taatagaagg
    29881 agcagagagc aacacatcat tcaaaaaacg ggtgaatttt gccaatttgg tataacgccc
    29941 gtattcgctc aagtaagtgc cggctaaaat accgattggt gttgcaatca gtgttgcggt
    30001 actgacaatc agtatagagc cgacaattgc attacgtaat cctcctgttt catttggtgc
    30061 aggagtcggg cgggtaaaca gttcccaaga cagtgcaggg ataccttttt ggagtaaagt
    30121 aacaataatc cagaccagcc aaaataagcc aaataataca gcggaatagg caagacttaa
    30181 catcaagaca ttttttattt ttcggcaata aaagcgtcgg ttttggtaat ttttcattct
    30241 cgttttcctt cctgtttacc cattcgtgcg attaataaac gtgaagcggc taaaacaatc
    30301 gaagtaataa ggaacagaat tagccctagg ctcatcaacg ctgatttttg taatccgccg
    30361 gcttcattaa attcattggc gatagcagaa gcgatggagg ttgaagggga aaataccgaa
    30421 tcaggtagca taaaggcatt accgatcaca aaggtaactg ccattgtttc gcctaatgct
    30481 cgacctaacc cgagcataat tgcaccgatt actccggttt tggtgtaagg tagcacgact
    30541 ttccaaataa cttcccaagt ggttgagcct aaaccgtaag cagactcttt cagtaaaggc
    30601 ggtacaacac tgaaaacatc acgcataatt gaggcaataa agggaataat cataatcgcc
    30661 aataccaagc cggcactgaa tagcccgatc ccgaaaggag ctccgctaaa aagcataccg
    30721 ataaagggaa gctgaccaaa tgtatctatc aaatacggtt gcacatattc ttgaaataag
    30781 ggtacaaata caaacagccc ccacataccg taaataatag agggaatagc cgctagcatt
    30841 tctaccgctg tgccgacagg gcgttttagc cattgcggtg caagttcggt taagaaagtc
    30901 gcaatgccga acgagaccgg aacggcaatg actaatgcaa tgccggcaga aatcaatgtg
    30961 ccgataatcg gcactaatgc accgtatcgg tcattcacag ggttccactc gttttcccat
    31021 aggaatgata ccccgaatcg gcttaatgct tcccaactgc caagcaataa tgaaaccagc
    31081 accaccacca acaaggcaaa aaccagcaaa gcaaagaaac gggttgtgtg atgaaataac
    31141 ccctctaccc aaggatggtt taagcatttg ttatcaattt tatgtttatg catagtgaca
    31201 actcttttgc aaaatgttgt gaaaaaacga ccgcttgttg ttagttaagc tccatacaag
    31261 cggtcgtttt gcattagtag agcgaatttc cttgtccatc tttaacttcc gttttccatt
    31321 gagtttggat tttctctact acattatccg gtagaggcac ataatccagt tcggcagccg
    31381 catctttacc gtgcttaaat gcccagtcga agaatttaaa taccccttta gtttgctctg
    31441 gtttgtcgct atgttgatga atcaagataa aactggcggc ggtaatcggc caggcttttt
    31501 ctcccgcttc gttggttaaa ataacgccca taccggctgt ttggctccaa tcggcgttag
    31561 cagcggcagc agcaaacgtt tcacgggaag gctgaacaaa tttaccatct gcattttgca
    31621 tagaaaccca agccagagca ttttgtttag cataggcata ttctacgtaa ccaatagaat
    31681 acttgagctg tttcacataa gctgcgacac cttcatttcc ttttccgcct tgtccgaccg
    31741 gccatttcac cgattttcct tcgccgactt tctccttcca ttcggcagag actttagaaa
    31801 gatagtttgt ccaaccgaaa gttgtgcctg aaccgtctga gcggcgtacg actaaaattg
    31861 tttttgccgg cagggcgata tcttgattaa gtgcgacaat tgccggatcg ttccattgtg
    31921 taattttgcc taggaatata tcggcaagaa ctttaccgga cagtttcagt tcgcccgatt
    31981 taagttcagg aatattgaca accggtacag ttcccccaat gatggcggga aattgcaaaa
    32041 gtttgtgttc tgctaatgtt tcgcctttca tcgggtcatc agaagcaccg aaatcaattg
    32101 ttttggcaat aatttgttgc tgaccgccac cggaaccgat agattggtaa ttgattttat
    32161 taccggtctc tttttcatat aaacctgccc atttggcgta gataggataa gggaaagaag
    32221 caccggctcc tgtgatggtt tgagcatttg ctgcgacaga aagtgaaaaa gaaatgccta
    32281 aaacggtaag tagtttaaat cgtttggcaa tcatattgtt ctccttaaag ttagcgtgag
    32341 ttaatttcac gtgcttagtg tagaaaaaga atatgacaaa atgatgacaa tggtaaaaaa
    32401 atcagaaaaa acgaccgctt gtgtttcagg ctagactaaa caggctaaat cgtagaaaat
    32461 agccctcgtt tttttaatat aaatatcgat aaaaaatgac cacagaaatc aattatgaag
    32521 gcattgaaca gatgccgatt aagcgtttta ccgaagatgc ttacctcaat tattcgatgt
    32581 atgtaattat ggaccgggca ttgccgttta ttggcgatgg cttgaaaccg gtgcaacgcc
    32641 gtattattta tgcgatgtcg gaacttgggc taaacgcctc ggcaaagtat aaaaaatcag
    32701 cccgtaccgt gggggatgta ttaggtaaat tccatccgca cggtgatagt gcctgctatg
    32761 aagcaatggt gctaatggct caaccgttct cttaccgcta tccgttagtg gacggacaag
    32821 gcaactgggg ggctccggac gatccgaaat ccttcgctgc aatgcgttat accgaatcga
    32881 aactgtctaa aattgcagaa attttattgg gcgagttagg gcaaggaacg gtggattatc
    32941 agccaaattt tgatggctcg ttggaagaac cgaaatatct gccggctcgt ttaccgcata
    33001 ttttgttgaa tggcacgatg gggattgcgg tgggaatggc aaccgatatt ccaccacaca
    33061 atattaatga attggctgat gccagtgtga tgttgctgga taacccgaaa gcaacgcttg
    33121 atgatgtact aagcgtggta caagggccgg attacccgac agaggctgaa atcatcacac
    33181 caaaagcgga aattgccaga atgtatgagc aggggcgtgg ttctattaaa atgcgtgcgg
    33241 tgtggaaaaa agaagagggt gaaattgtga tttcagcctt gccgcaccaa gcctctcctt
    33301 caaaaattat tgagcaagta gcaacccaaa tgcggaataa aaaactaccg atggtggacg
    33361 atattcgtga tgaatctgac cacgagaacc cgattcgcat tgtgattgtg ccacgctcta
    33421 atcgcattga ttttgatgcg ttaatggatc acctgtttgc gacgaccgat ttggagaaaa
    33481 gctaccgagt caatatgaat atgattggct tagacggcaa gccggcagtg aagaatttgc
    33541 tgactattct caatgagtgg ctgagtttta gacgtaccac tgtcactcgc cgcctgaatt
    33601 accgattaga taaaatttta aaccgcttgc atattttaga cggtttgatg attgcatttc
    33661 tcaatattga tgaagtgatt gagattattc gcaatgaaga tgagccgaaa gccgagttaa
    33721 tggctcgttt taatctgacc gatgtgcaag cagaggcgat cctgaactta cgtttacgcc
    33781 acttagccaa attggaagag catcaattac aggcggaaaa atccgaactg gaaaaagaac
    33841 gtgatgaatt gcaactgatt ttaggctcgg aacgccgttt gaacagcctg atcaagaaag
    33901 agattcaagc cgatgccaaa gcatttgcca gcccacgccg ctcaccattg gttgaacgag
    33961 cggagtctaa agcgattgcg gaaagtgact tgactccaac cgaagatgtg actgtgattt
    34021 tgtctgaaaa aggctgggta cgttgtgcga aaggacacga tattgatgtt caagccctaa
    34081 gccatcgagc cggagatggt tatcttgccc acgcaagggg tagaagtaat cagcctgtgg
    34141 tatttttaga cagtacaggg cgagcttatg ctctcgatcc aacttcactg ccttcggcac
    34201 gctcgcaagg cgaaccgctt acaggcaaaa tcaccctacc ggaaggtgca gtagtgcagc
    34261 aagtgctaat ggcaagtcca gaaactaaag tgctaatggc atccgattca ggttacggct
    34321 ttatttgcac ctttgcagat ttagtttctc gtaataaagc cggcaaagcg gttatttctt
    34381 taaccgaaaa tgcaaaagta ctgccgccgc aattattgga aaatgatgaa aatttatcgc
    34441 ttgtagcgat gagtaatgtt ggcagaatgt tggttttccc ggtgagtgaa ttacctcaac
    34501 tttccaaagg taaaggcaat aaaatcatca atatttccgc cgcagcggca aaatccggtg
    34561 atgaatattt agcccgttta ttagtcatca aaccaaccaa ctcgctggtc tttgtgtccg
    34621 gtaaacgcaa aatcacatta aaaccgagcg atgttgataa ctaccgtggc gaacgagcaa
    34681 gaaaaggctc acagctagtg agagggctta gtaccaattc aacggtagag attgttgagt
    34741 aaagagaaga agcggttagg gggtaaatcc aacaattttg ccccaaataa ccgcttgcaa
    34801 tggagttatt gcttattcaa ataagccttt gtgaagcgaa cgaaccacat cgtctgcttc
    34861 tgcatttttc actaaggtac aaacattatt gctgcttgct ccatagctga ttaggcgaat
    34921 gttgtaattc tcaagagtgt ggaataattt tttcgccaca ccggactgag cgtgtaagtt
    34981 gttgccgata atagcgacta aagcgaggtc gctttctact tgcacattgc aatatgcgtt
    35041 aagctcatcg agtaattccg ctgataacat atctgcacct gaagaggctg agcccgtttt
    35101 atctagggtc aatgcaacgc tgacttcgga agtggtaatc acatcaaccg aaattttgtg
    35161 tttcgctaaa atcgcaaata cattcgctaa gaaaccttgt gcgtgtagca ttgaaaggct
    35221 ggaaagcgtg agtaaaattt ggttgcggcg taatgcaatc gcacggaaag tcgggcgtgg
    35281 ttgtggatca cgggttaccc aagtgccgcc ttgttccggt gctttgcttg agccaacata
    35341 tacagggata ttgctacgca ctgccggtaa taaggttgct gggtgtaata ctttcgctcc
    35401 aaatgttgcc atttctgccg cttcgttaaa tgccattgtg tcaatgcgtt gagcgttcgg
    35461 tacaacacga ggatcggtgg tataaatccc cggtacgtct gtccaaatga gtacatcgtt
    35521 agcatttaat acttctgcta acaatgcagc agagtagtct gaaccgccac gtcctaaagt
    35581 agtggttttg ccttcatcat cacgaccaat aaagccctgt gtaatcacaa ttttgcctga
    35641 tgcgattaat ggcttaatca cattgtctga ttgttgctgg gttttctcgt catttggtgc
    35701 tgcttttcca taatggctgt ttgttgccac aacgtcacgc acatctaccc atactgccgg
    35761 gtgtccacgt tcaattaata attgcgtgaa gattttggtg gacatcattt ccccatggct
    35821 gattaactca tcacttaagg cagctgaagt agcaaggctg gctgattctg ctaatgtttc
    35881 aatacgttct aataattcgt cgatttccgc tttaacggca tcttgatgtt gtaatttttc
    35941 aataatattg tattgaattt ggcggactgc tgcgatgact tcatcacggt gttctttttc
    36001 acagccgtta gcaagttcca ctaagtaatt ggttacgcca gcagaggcag aaagtaccac
    36061 cacacgagta tttgcatcag caattacaat attggcagaa gaggtcattg catcaaaatt
    36121 tgcaacactt gtaccaccaa att
//
LOCUS       DANLVT010000009        35695 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.009, whole genome shotgun sequence.
ACCESSION   DANLVT010000009 DANLVT010000000
VERSION     DANLVT010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 35695)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35695)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35695
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.009"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            58..2357
                     /locus_tag="PXC99_000389"
                     /pseudo
     CDS             58..2357
                     /locus_tag="PXC99_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005759321.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(2435..3136)
                     /locus_tag="PXC99_000390"
     CDS             complement(2435..3136)
                     /locus_tag="PXC99_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HDL5416883.1"
                     /translation="MDLQNRENFLNKLAQRMGRPRQNVPEPIPVLENNHAITRLTDRP
                     QPQLCQEFIDFARVMMADVVEAKEADLPQAIIDICEKYGGASVIVNNDQRLKDLGITA
                     AIQAKYEDSYVWDFNQAETNFEKARTANIGVVYGEYGLAESGGIVLFSDKEFGRSVSL
                     LPEKSVVVLRKSTVLPRVAQLAQILHEKAQRGERMPSCVNIISGPSATADIELIKVVG
                     VHGPVNKIYLVIDDL"
     gene            complement(3141..4550)
                     /locus_tag="PXC99_000391"
     CDS             complement(3141..4550)
                     /locus_tag="PXC99_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HDL5416884.1"
                     /translation="MSYLQTNTLPFKQRVEQQVNNEIVRKALVKAQETIGANRQRMVD
                     ELGNWEEWRDDAKAIRNHVLANLDAYLYQLSEKVTQNGGHVFFAETAEEATDYIKNVA
                     KAKNAKKIVKSKSMVTEEIGMNHVLEAEGIKVVETDLGEYLLQIVGDKPSHIVVPAIH
                     KDRHRIRQEMHDVLGYQGSETPEEMTAFVRQKIREDFLEADIGISGCNFAVPETGSVC
                     LVTNEGNLRMATTVPKTHIAVMGMERIAPTFKEVDVLITMLARSAVGAKLTAYNTWLT
                     GPRLEGETDGPEEFHLVIVDNGRSKILESEFQEVLRCIRCGACLNTCPAYRQIGGHGY
                     GSIYPGPIGSVISPLLGGYEEFKELPYACSLCTACNSVCPVKIPLAQLILKHREKIAD
                     AGLTPMAERLSIFGFNFANSHPTLWKVGVKVGAKVASKLIKNGKAPVNFGALGEWTKA
                     RDLPTAEGESFREWFNNRG"
     gene            complement(4552..5283)
                     /locus_tag="PXC99_000392"
     CDS             complement(4552..5283)
                     /locus_tag="PXC99_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HDL5416885.1"
                     /translation="MNVNFYVTCIADVMKAGVAKNTVLLLEKLGCKITFLEKQGCCGQ
                     PAINSGYTKQALAGMKNLVETFEANDYPIVAPAGSCVYAIKTYPDHFERFGEKEWAER
                     AKKVADRFYDLTDFIVNKLGVKDVGAYLPGKAVYHPSCSLFRKLGIKDEPIALLQHVK
                     GLELLPIKNQETCCGFGGTFSVKMAEISGEMVKEKVANVDTDEPDYLIGADVSCLMNI
                     GGRLSREGKPIKVMHIAEVLMQGGK"
     gene            complement(5427..7031)
                     /locus_tag="PXC99_000393"
     CDS             complement(5427..7031)
                     /locus_tag="PXC99_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HDL5416886.1"
                     /translation="MALFLSVFPIVLLIYLMVKRNALPSYVALPLTALLIFVLQLTYF
                     GNDTTLIFANIIAGLGDVLTPITVIFGAILFNRFSEVSGATNTMRKWLGTINPNPVAQ
                     LMIIGWAFAFMIEGASGFGTPAAIAAPILVGLGFKPLQVAMLALVMNSVPVSFGAVGT
                     PTWFGMGPLLKDGLLTDAQVLEIGSITALIHSIAAFIIPVMALRLIVSWKEIRQNIVF
                     IYISIFACVIPYFIIAQFNYEFPSLVAGAIGLLVSVWVANMGIGLAKSENHLDGDKAT
                     FGEVAKALLPTGLLIFILVITRIQQLPLKAMLNDATAWIVSSLGFANFEISQGLIFAL
                     KNILGTNVATSYKLLYVPALIPFVVTVLICLPIFSVSGKNTQEIFGTSFKQVKKPFLA
                     LLGAIVMVKLMLIGGVDSMVQIIGKNFAEFTGQSWTLFASFLGAIGAFFSGSNTVSNL
                     TFGTVQYATAQQVGLSVTLILALQSVGGAMGNMVCINNIVAVCSVTGIEKQEGNIIKK
                     TAVPMFVYGVIAAISALFIVPMFYNL"
     gene            complement(7321..8412)
                     /gene="ychF"
                     /locus_tag="PXC99_000394"
     CDS             complement(7321..8412)
                     /gene="ychF"
                     /locus_tag="PXC99_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001538644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HDL5416887.1"
                     /translation="MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVV
                     PMPDPRLDALAEIVKPERVLPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGH
                     VVRCFENDDIVHVAGKIDPADDIEIINTELALADLDSCERAIQRLQKRAKGGDKDAKF
                     ELSIMEKILPVLENAGMIRSVDLDKDELHAIKGYNFLTLKPTMYIANVNEDGFENNPY
                     LDRVREIAEKEGAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYRL
                     LNLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYQDFIDNKGEA
                     GAKEAGKWRLEGKDYIVQDGDVMHFRFNV"
     gene            complement(8598..9185)
                     /gene="pth"
                     /locus_tag="PXC99_000395"
     CDS             complement(8598..9185)
                     /gene="pth"
                     /locus_tag="PXC99_000395"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HDL5416888.1"
                     /translation="MSEIKLIVGLANPGVKYEETRHNAGEWLINELARIYNVSLKEEP
                     KYFGKVAKINTAQGEVRLLVPTTFMNLSGKAVGALANFYRIKPEEILVAHDELDLPPG
                     SVKLKKGGGHGGHNGLKDIIAALGNNKEFYRVRIGIGHPGHKDLVANYVLGKPSPSDQ
                     TLLNSAVDEAARCVEVLFKDGMVKATNRLNSFKAN"
     gene            complement(9258..10133)
                     /locus_tag="PXC99_000396"
     CDS             complement(9258..10133)
                     /locus_tag="PXC99_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HDL5416889.1"
                     /translation="MMKKFIPVMIAALVLSACSSQPAKRKSTPRIKATAAYIPTENSA
                     YVVFDLNQKKFLEGKNFNLVRPIASVTKLMTAVVFLEENRYGASCQTQILPSDADFLK
                     GTTSPLPKNLNIACSELLKAMLVRSDNYAAHALAHATHLNKAQFLARMNSKAREIGMT
                     QTYFGDSSGLSSDNVSTVVDLAKLAGYAASKPEIQQLSNSPLVSVYAGGRYFSMKNTN
                     SMVRSQSYQALVSKTGYTREAGYNLAFIAKGDCRGKRIGVVSLNNDNAASRTDFTESM
                     LAKYQCVPNPYRQYD"
     gene            10355..11935
                     /gene="prfC"
                     /locus_tag="PXC99_000397"
     CDS             10355..11935
                     /gene="prfC"
                     /locus_tag="PXC99_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HDL5416890.1"
                     /translation="MSYPQEVNKRRTFAIISHPDAGKTTITEKVLLYGNAIQTAGSVK
                     GKGSAQHAKSDWMEMEKQRGISITTSVMQFPYNDCLVNLLDTPGHEDFSEDTYRTLTA
                     VDSCLMVIDSAKGVEERTIKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVESVLK
                     IKCAPITWPIGCGKLFKGVYHLYKDETYLYQTGQGHTIQEVRVVKGLNNPELDQAVGD
                     DLAQQLRDELELVQGASHEFDHTEFIKGELTPVFFGTALGNFGVNHFLDGLTEWAPAP
                     QARQSDEREVSPSEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRIG
                     KDVVISDALTFMAGDRSQAEEAYAGDIIGLHNHGTIQIGDTFTQGENFKFTGIPNFAP
                     ELFRRIRLRDPLKQKQLLKGLVQLSEEGAVQVFRPLINNDLIVGAVGVLQFDVVVSRL
                     KTEYGVEAIYETVNVATARWVEGKDAKKFEEFKRKNEANLALDGGDNLTYIAPTMVNL
                     NLAQERYPDVQFFKTREH"
     gene            12194..13768
                     /locus_tag="PXC99_000398"
     CDS             12194..13768
                     /locus_tag="PXC99_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5416891.1"
                     /translation="MKKWLIPLTVAAFCVSACDDKNSTQATAEKPQVENTQSQKNAEI
                     LPLATVVAPWEINSLDPNQSGVIFQRMNLAETLVEADLNGNLIPALATDWRSNEEGTI
                     WRFTLREGVKFHNDQVLTAQAVVNSLNIAKSKPGVLAKAFIKEIRAVDNKVEIELTKA
                     FVPFPPFLTHYTALILAPESYNEKGEVTQIIGTGAFKPTKIEAPQKLEAVQFEGYWGK
                     KPQVQQANYLASSRSETRMLMAQSEPSSLVFNLDTASVARLKADPNLQLVSGSIARTI
                     QLKMDVAKPFFNDLAIRQALSQAINRKAIAEQVLKIENGAADQILPKAFADWRVDTAE
                     QVVDIAKIKQNLTASGYTFDEQGRLTKDGKPFSFTMRTFSDRPELPVIATILQAQWKQ
                     IGVEVNVSVGNFSEIPAGHQDGSLEMALYALNYGKTLDPYGVIASDFANGGSDWGVMN
                     WQNTEVDNAVKSLETERDPQKAKALKQTVSKIIYNDLPIIPVVYYQQNVVAHKEVKNV
                     TLDPFERRFFLELLSK"
     gene            13988..14920
                     /locus_tag="PXC99_000399"
     CDS             13988..14920
                     /locus_tag="PXC99_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5416892.1"
                     /translation="MHKILFRRLIQILLVIWSVGTLTFILTRQLSGDMAYRIAASRYG
                     YDQADSAAAEAVRAELGLDQPWWQSYFSWLSDLAQFNLGKSLVTGDPVWSEIQHQFGH
                     TLSLAIVALILAILIGPPLGLLAARKPNGFFDRLTLVFSTLFRSVPAFIIAIGLITLF
                     SAQLKWLPAGGYGCWQHFILPALTLAIGLSTVSVRVTRSAMVQVKGSEFYQFSQLKGL
                     SRWHTFLRHGLPNIAVPVIAYHAVQLVYLIEGVVVVESLFAWPGSGHALVHAIIARDV
                     PMIQGTTLVMGGLFVVLNTIADLLSAWIDPRIKR"
     gene            14930..15712
                     /locus_tag="PXC99_000400"
     CDS             14930..15712
                     /locus_tag="PXC99_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5416893.1"
                     /translation="MKISISQYLGGTILLAMLGFAFLQPYFYPMDIGFQDLTNILSNP
                     NEIAWFGTDHLGRDMLARLASAIRLSFGLSLFSVICALIAGLITGIMAGFFGGWIDRI
                     FSFICDLVMALPGLLLVLLFAALSPGSFWTLYLGISLVMWVEFFRVIRSISSTMANSS
                     EIQASRLMGMGWFYSFKRHLLPRLLPMIATLSAFSLGNAILALATLGFVSVGLRPPTA
                     ELGLMMTELFPYYYEAPLIFLQPVVAVFLMVLSLQLLSRKIK"
     gene            15801..17213
                     /locus_tag="PXC99_000401"
     CDS             15801..17213
                     /locus_tag="PXC99_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5416894.1"
                     /translation="MKLLDIQNLSVETENRLQLVEPISLQLKAGKNITILGETGSGKS
                     LLIQAIMGALPDGLIASGEISVKNCKISTESDRLQTLWGKTLVMLPQEPRRSLNPIMA
                     IGKQLWESFHYVAGKPSSQAKTESKAYLAKLGLGESVENYPHQLSGGMAQRASFAIAT
                     AAGGKILLADEPTKGLDPISKGKVIELLKSAYQNGGGLLTITHDIEVAEQLGGTILVM
                     KKGELLEQGEAKALLNNPQHPYTKALISADPKHWQPLQDLQNLSQKQPLVSVKNLSIA
                     RGKKTLFSNLSFDLHKGEVLGIVGHSGIGKSSLADVLCGLLKPKSGEVVWHSHSHKKH
                     QVLKLYQDPPEAFAPNVSLKTLLDDVINKHQLDRLPIPSLLQQLSLNPEILQRNAENV
                     SGGELQRVAILRALLLEPVLLFADEVTSRLDPITQQETIELLINQCRARNCSLILVSH
                     DPYLIEKSCDKVINLEEYVG"
     gene            complement(17300..18043)
                     /gene="rlmB"
                     /locus_tag="PXC99_000402"
     CDS             complement(17300..18043)
                     /gene="rlmB"
                     /locus_tag="PXC99_000402"
                     /EC_number="2.1.1.185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HDL5416895.1"
                     /translation="MSEQIYGIHAVKAFLDNAPERLIEVLVLKGREDKRLMPLLNELQ
                     RLGVAIQQVNRQTLDNKSQGEVHQGIIARVVPQKELNEHDLEAILSQKKNPLLLILDG
                     VTDPHNLGACLRTADAAGVDAVIVPKDKSAQLTPTARKVACGAAEVMPLIRVTNLART
                     MRDLQERHNVWIVGTAGEAESGIYEAKLTGSIALVMGAEGDGMRRLTREHCDQLISIP
                     MAGSVSSLNVSVATGVCLFEIVRQKLAGQ"
     gene            complement(18098..19465)
                     /gene="pssA"
                     /locus_tag="PXC99_000403"
     CDS             complement(18098..19465)
                     /gene="pssA"
                     /locus_tag="PXC99_000403"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HDL5416896.1"
                     /translation="MLILNKQRKAEYLLKSLPYLPQVAEQVQFLASSKAFKQQILQLI
                     QTAKKRIYITALYFEKDEAGQEVLAALYQAKRNNPELEINILVDWHRAQRGRIGEAEN
                     LSNADWYAKVKYEQGLPAGQEIAFYGVSINGREVFGVLHLKGFVFDDTILYSGASINN
                     VYLHQFERYRYDRYHVIENKVLADSWVTFIQQHLLTNEAVKRLDTENRPKTAEIRAQI
                     KHFRKQLSREAYLFNGVAENGRLAVSPLVGLGRRKNQLNKVIEALFYQTEQKLTICTP
                     YFNFPHSLRTRIEWLLANGKSVEIIVGDKTANDFYTKPDEKFTMASALPYLYEKNLRA
                     FAKRLDGYVQNKQLTIRLWKDGENSYHLKGVWVDNRYILLTGNNLNPRAWRLDAENAI
                     LISDPQHQLSEKAETELNQICQHTQILTHYSDLEVLTDYPENVRKLLKKFGRVKLDKI
                     VKMLL"
     gene            complement(19535..21082)
                     /locus_tag="PXC99_000404"
     CDS             complement(19535..21082)
                     /locus_tag="PXC99_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tannase/feruloyl esterase family alpha/beta
                     hydrolase"
                     /protein_id="HDL5416897.1"
                     /translation="MMKIIAFLFIFLSVFSHTALANSMAEQCVALKSNSPEKTAIYKA
                     EWVEKSAELPAYCLVQGEIGKRVEVDNVPYGIQFELRLPEQWNEKFLFQGAGGVGGVI
                     FPAIGKLYPHGASGANGLNRGYAVVSNDSGHATRDLVFTADPEARSNYAYASIGKVTT
                     VAKQLIAEFYRKPSKHNYIMGCSNGGREAMMAAMRYPQEFDGVIAGSPGFRVSRSVLA
                     EVWDNRALLAVAPKNGDGDKILSQALTQQDLDVIANGVLTRCDKLDGLADGLINAWEQ
                     CDFQPEMVAKQLGQKKVALIKTIFEGAKNSRGELIYSPWAYDSGINAKGWRDWKLGDS
                     QTAQPNSISFKMGLKSLTHYYLAPRVPSRDPLSVDLDQASEQVKAVGSIHDTDQVDLS
                     AFKQNGGKMLIYQGVSDPIFSAVDLKNWYQSLQQAVENPQHFAKLFFVSAMNHCGRGA
                     TVNDFDMLTALENWVEKGLEPESIAAKAGELYPNKAKQIPLCAYPKVAIYQTGEDPNR
                     LTSYQCR"
     gene            complement(21207..24023)
                     /gene="ileS"
                     /locus_tag="PXC99_000405"
     CDS             complement(21207..24023)
                     /gene="ileS"
                     /locus_tag="PXC99_000405"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HDL5416898.1"
                     /translation="MTIDYKNTLNLPETGFPMRGDLAKREPDMLKNWYDKNLYQKIRT
                     ASKGKKTFILHDGPPYANGNIHLGHAVNKILKDMILKSKTALGFDTPYVPGWDCHGLP
                     IELKVEGIVGKPNEKISAAEFRQACRDYAKEQVEGQKADFIRMGILGDWDNPYLTMNF
                     NTEANIIRTLGKVIANGHLYKGSKPVHWCLDCGSSLAEAEVEYEDKVSPSIYVRFNAV
                     DVNAVEEKFNAQGKGRGALSAVIWTTTPWTIPSNRAIAINPELDYALVQLGDERVLLA
                     VDLVEDVAKAAGVESAEILATTKGENLELLRFNHPFYDYSVPFIFGDHVTTDGGTGLV
                     HTAPDHGADDFVVARKYNIEMAGLISNDGKFKADTPFFAGLGVFESNDKVVEKLQEVG
                     ALLKLSRIKHSYPHCWRHKTPIIFRATPQWFIGMETQGLRQQALGEIKSVRWIPSWGE
                     ARIDTMVANRPDWCISRQRTWGVPMAMFVHNETEELHPRTLELIEEVAKRVEEKGIQA
                     WWDLDPAELLGEEAKDYRKVPDTLDVWFDSGSTYASVVEQRPEFNGNSADMYLEGSDQ
                     HRGWFMSSLMLSTATNGKAPYKQVLTHGFTVDEKGRKMSKSLGNVIVPSEVWNKNGAD
                     ILRLWVASTDYTGEITVSHNILNSAGESYRRIRNTARFLLANLNGFDPKSDLVQPQEM
                     IALDRWAVACALEAQNDIKEAYDNYQFHTVVQRLMRFCSIEMGSFYLDIIKDRQYTTK
                     ADSLARRSCQTALWHIAEALVRWIAPILSFTADEIWGYLPQVEGRSEFVFTEEFYTGL
                     FGLTEQDKLDDAYWQQILKVRAEVNRVLEQARKDKVIGAGLEAKVTVFANDEIRPLLE
                     QLGNELRFVLITSQAIVKPLAEADIAEGELAGLAVKVENADGEKCPRCWHYATDIGSH
                     SGHEEVCGRCVENVAGEGEKRLFA"
     gene            complement(24126..25088)
                     /gene="ribF"
                     /locus_tag="PXC99_000406"
     CDS             complement(24126..25088)
                     /gene="ribF"
                     /locus_tag="PXC99_000406"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HDL5416899.1"
                     /translation="MQLIRGFHNLDKHIALNQGCVLSIGNFDGVHLGHQNILARLCDR
                     ALDLGLPSVVMLFEPQPREFFAKKSGNSTACNPPARLMRLRDKLKYLEEAGVDFVLCV
                     RFSEKFAQISADDFISDLLAKRLKVRYLSVGDDFRFGAKRAGSFETLRNAGLKYRFAV
                     EESHTHSLNEERISSSLVREALQNNELDLAEKLLGKPYSILGRVAHGNKLGRTIGFPT
                     ANIMLNRLVTPIQGVFAVKVKTKQGSFNGIANVGNRPTINGTKPLLEVHIFDFNASIY
                     GEAIEVIFLKKLRNEIKFPDFEALKAQIEKDRLQAVEFFKEFAR"
     gene            25312..26586
                     /gene="nadR"
                     /locus_tag="PXC99_000407"
     CDS             25312..26586
                     /gene="nadR"
                     /locus_tag="PXC99_000407"
                     /EC_number="2.7.1.22"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional transcriptional
                     regulator/nicotinamide-nucleotide
                     adenylyltransferase/ribosylnicotinamide kinase NadR"
                     /protein_id="HDL5416900.1"
                     /translation="MTDFAYLQQKRKQLKLKVNDICEQAGVTRAYFNQLVSGKIKNPS
                     ANKLKALHSVLDIVEDSNQRSGVIFGKFYPIHTGHINMIYEAFSKVDVLHVIVCTDSE
                     RDLRLFQESKMKRMPTNEDRLRWVQQIFKYQQKQIFIHHLVEDGIPSYPNGWEDWSGR
                     VKALFEEKSINPTIVFSSEIQDKESYEKYLNLEVQLVDPTRESFNISATQIRNNPFQY
                     WRFIPKEVRPFFVKTIAILGGESSGKSVLVSKLANVFNTTSAWEYGREFVFEQLGGNE
                     QAMQYSDYPQMVLGHQRYVDYAMKHAHKVAIIDTDYITTQAFCIQYEGKAHPFLDSMI
                     REYPFDVTILLSNNTKWVADGLRSLGSKKQRQQFQHLLKKLLEKHHIPYIKIESPSYL
                     DRYNQAKEVVEAILNEEPIPLQFKQYNIHEFE"
     gene            26604..27296
                     /locus_tag="PXC99_000408"
     CDS             26604..27296
                     /locus_tag="PXC99_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL5416901.1"
                     /translation="MILFAGDPHGSYEHLYPILQQQTEEVALVILGDLQLTTPDELDR
                     LSQYCDIWFIHGNHDSKTVAAFDAIWNSSWKERNIHGKVVDIQGIKIAGIGGVFRGHI
                     WMPPNRPMFFDPIHFCQYSAPEKIWRGGIPLRHRSSIFPSDFEALENEKADILITHEA
                     PKPHPQGFSVINQLARKLGASKIFHGHYHDNFNYGNLNVSRECAIYNIGFRSLADING
                     NYLILGVDDREK"
     gene            27429..28151
                     /gene="arcA"
                     /locus_tag="PXC99_000409"
     CDS             27429..28151
                     /gene="arcA"
                     /locus_tag="PXC99_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator ArcA"
                     /protein_id="HDL5416902.1"
                     /translation="MKIPQILIVEDELVTRNMLKSIFEGEGYQVFQASNGEEMHSVLS
                     TNEINLVLMDINLPGKNGLILAREIRENMKLPLMFLTGRDNEIDKILGLEIGADDYIT
                     KPFNPRELTIRARNLLQRTMIDKENDVVKEQSEIESYRFNGWILDINSHSLISPEGEV
                     NKLPRSEFRALLHFCQHPGKIQTREDLLKKMTGRELKPHDRTVDVTIRRIRKHFEDHP
                     NTPEIIVTIHGEGYRFCGNIEP"
     gene            28171..28689
                     /locus_tag="PXC99_000410"
     CDS             28171..28689
                     /locus_tag="PXC99_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HDL5416903.1"
                     /translation="MKKLTIVALTCLFSTHLLAAPVGNTFTGIGVGVDVTTTKYKVEG
                     VKGKDSTGPALVVDYGIEQGNNFVGVVQGKAKVGSTKVFSDVKQKNKYTIAYQQGYRV
                     GSDLLPYVKVDASSSKIGNETYRGFGFGAGAKYAVSSDVELGAEYTRDNLKRSGTKLK
                     GNAFTANATYRF"
     gene            complement(28767..29996)
                     /gene="serA"
                     /locus_tag="PXC99_000411"
     CDS             complement(28767..29996)
                     /gene="serA"
                     /locus_tag="PXC99_000411"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HDL5416904.1"
                     /translation="MAKISLDKSKIKFLLLEGVHQNAIDVLLAAGYTNIEVHKKALDG
                     QELIDAIKDAHFVGIRSRTFLTEEVLAQAPKLIAIGCFCIGTNQVDLNAAKRRGIPVF
                     NAPFSNTRSVAELVLAEMILLMRKVPTANAEVHRGVWNKSAAGANEVRGKKLGIVGYG
                     HIGSQLSILAEAIGMQVYFYDVENKLPLGNAQQVPTLEHLLSTCDMISLHVPEIDSTK
                     NLMSAERIAQLKEGSVLINAARGTVVDLDALAARIEDGSLRGAAIDVFPEEPASINDP
                     FVSPLCKFDNVILTPHIGGSTSEAQANIGTEVANKFVKYSDNGSTVTAVNFPEVSLPL
                     HTNTKRLLHIHENRPGMLNQINQIFVESNVNIAAQYLQTDAAIGYVVIDVESDNVDEA
                     LQRLKAIEGTIRARVLY"
     gene            complement(30033..30692)
                     /gene="rpiA"
                     /locus_tag="PXC99_000412"
     CDS             complement(30033..30692)
                     /gene="rpiA"
                     /locus_tag="PXC99_000412"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HDL5416905.1"
                     /translation="MDQQEMKKIAAQAALKFVKPDTIVGVGSGSTVNCFIDALASMKD
                     EIKGAVAASKASEQRLRDIGIEVFSANEVTELDVYIDGADEITPQGAMIKGGGAALTR
                     EKIVSSLAKKFICIVDKSKQVDVLGSTFPLPVEVIPMARSYVARQLVALGGSPEYREG
                     VVTDNGNVILDVHNFKIMEPLKMEHTINNIAGVVTNGIFAQRFANVTIVGTPEGAVIL
                     E"
     gene            complement(30837..32171)
                     /gene="glmM"
                     /locus_tag="PXC99_000413"
     CDS             complement(30837..32171)
                     /gene="glmM"
                     /locus_tag="PXC99_000413"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HDL5416906.1"
                     /translation="MARKYFGTDGVRGEVGKFPITPEFALKLGWAAGKVLATQGTKKV
                     LIGKDTRISGYMLESALEAGLTAAGLSAVFVGPMPTPAIAYLTRTFRAEAGIVISASH
                     NPYYDNGIKFFSSVGEKLPDEIEEAIEAMLDKPMDCVDSANLGRASRINDAAGRYIEF
                     CKGTFPSELSLEGYKIVVDCANGATYHIAPNVMRELGAEVLEIGTKPDGLNINEKCGA
                     TDIKALQKVVVEAGADVGLAYDGDGDRLIMVDHLGNKVDGDQILFILAREALRSGKLQ
                     GGVVGTLMSNMSLELALKELAIPFSRANVGDRYVLEQLKEKGWKLGGENSGHIIVLDK
                     NTTGDGIIASLQVLAAMASHKLSLNDLAKAVPLFPQVLLNVRFEKGAANPLESNEVKA
                     VAADVEKRLAGKGRILLRKSGTEPLIRVMVECEDAVLAQSCAEEIVEAVKRN"
     gene            complement(32197..33729)
                     /gene="ilvA"
                     /locus_tag="PXC99_000414"
     CDS             complement(32197..33729)
                     /gene="ilvA"
                     /locus_tag="PXC99_000414"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HDL5416907.1"
                     /translation="MMNETQHSQSAIDYLRSILSSNIYDLAQVTPLQKMEKLSERLGN
                     SIFIKREDRQPVHSFKLRGAFAMISNLSKAQKEAGVIAASAGNHAQGVALSAKHLGLR
                     ALIVMPQNTPAIKVDAVRGYGGEVLLYGANFDEAKAKAIELSTELGMTFIHPFDSPAV
                     IAGQGTIGLELVQQKPDLDYVFIPVGGGGLIAGIAVLIKQVMPNIKVIGVESKDSACL
                     YHALKQGQPTDLERVGLFADGIAVKRIGDETFRLCQQYVDDVVLVDNDEICASMKLIF
                     ENVRAISEPSGATSLAGLKKYVKEHQLQDKNLACILSGANVNFHTLRFVSERCEIGEK
                     REALLAVTIAEQKGSFLKFCEILGNRAVTEFNYRHSDDKQACIFVGVRISGSAEKVEI
                     IKDLQQNGYDVADLSDDDIAKTHIRYMVGGRASSIQYEQLYSFEFPEQKGALLKFLQM
                     LTNWDISLFHYRAHGADYGDILAAFALNRGDEVELNRHLEQLGYRFQNVSESPAYQYF
                     LK"
     gene            complement(33990..34583)
                     /gene="slyD"
                     /locus_tag="PXC99_000415"
     CDS             complement(33990..34583)
                     /gene="slyD"
                     /locus_tag="PXC99_000415"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDL5416908.1"
                     /translation="MNITKDLVPSIAYQVRTQEGVLVDEAPVNQPLEYLHGHNNLVEG
                     LEKALEGKAVGDVFEVRVKPEEGYGEYNDNMVQRVPKDVFMGVDELEVGMRFIADTDL
                     GPLPVVITEVDGDEVVVDGNHMLAGQELLFSVEVVGIREATAEEIAHGHVHGGHEHGC
                     GCGGHDHHHDHDGCCGGHDHDHHHHHGHGGCGCGGHH"
     gene            complement(34686..34826)
                     /locus_tag="PXC99_000416"
     CDS             complement(34686..34826)
                     /locus_tag="PXC99_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416909.1"
                     /translation="MKKLIKVCGLISATIFLSGCLVTSVVGGVVGTAVDVVDTVTPDI
                     ID"
     gene            complement(34898..35584)
                     /gene="aqpZ"
                     /locus_tag="PXC99_000417"
     CDS             complement(34898..35584)
                     /gene="aqpZ"
                     /locus_tag="PXC99_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin Z"
                     /protein_id="HDL5416910.1"
                     /translation="MKKYFAEFFGTFWLVFGGCGSAVLAAGIPELGIGYAGVSLAFGL
                     TVLTMAYAVGHISGGHFNPAVSIGLLVGGRFNAKDLVPYIIAQVIGAIAAGAVLYTIA
                     SGVPTFDATAGFAGNGYGEHSPHGYSLTAALLIEVVLTAFFLIIIMGATDKRAPAGFA
                     PIAIGLALTLIHLISIPVTNTSVNPARSTGVALFQGSWAIEQLWLFWVAPIVGAIIGA
                     VVYRFIAEEK"
BASE COUNT        10352 a         8077 c         7006 g        10260 t
ORIGIN      
        1 tgtaaatttc attgccatta tttttttatg gctatttatt ctagaaggac tctaaacgtg
       61 ttaaagaaaa attatctcac tgtatcaatt ctccttgcca ttagtggagt aggctacgct
      121 aatgaaatct ctttagagac tattactgtt gatggaaata cgccttcaac caaagggaaa
      181 ttactaggtg gtgaactaaa tagcaatgaa tctgttgttg atgaaaaaaa ttaaaacaag
      241 gtagtattac attaggtaac gctttatctg gtgaattagg cattcattca agccagttcg
      301 gaggcggtgc aagtacccca attattcgtg ggcaagagag taaacgtgca aaaatcttac
      361 aaaataatgg cgaaaactta gatatgtcgg gaatgtctcc tgatcatgca gtaaccgtag
      421 atgcgctact tgctaaacgt attgaaattt tacgtggtcc aactacttta ctttacagtg
      481 caggtaatac ggcaggtgta attaatgtgg tagacaataa aattccaacc gctattcccg
      541 aaaaaggcta tgaggggcaa tttggtgtgc gttttggctc agccagtaaa gagcgtttaa
      601 cctatgcagg ctcaaccttt gcccttggaa atcatttagc cttgcgggta cagggaatgt
      661 ataacaaagc ttccgaatac tatgctccac actttacgat tgaaggcaaa ccttaccacc
      721 gcgtaccaga tagcgatgta caatcacaaa ccggcacagt aagcctttct tggattggag
      781 agcgaggaca tcttggtatt gcttacactg atcgccgtga taaatatgga ttaattggtc
      841 acacacacaa atacgatcac tatactatta gtattattcg ccaagccgtt atgtttgcaa
      901 aaggttattt acgtttttat ccgcaccttg cagaagaagg agatattgac tataacaacc
      961 ctggtatccg tttactgcat actcatattc cgggaggctc acattatgga caagatactc
     1021 acgagcacgg caaaccttgg attgatatgc actccaagcg gtatgatatt gatggaagtt
     1081 tgcaaaatcc acttcctggt tttgaagaag ccaaaatatc agctaactat gtagattact
     1141 atcatgatga aaaagatgga aaaagagttg aaaattactt caagaacaaa ggaaaaaatc
     1201 tacgtttcga attggttcac aaagagtgga aagggctaaa aggagctatt ggtgtgcaat
     1261 ataccaacca atctacctca gcacttgcac ttgaagcttc acgagctgca aaagtattta
     1321 ataaacagcc tttactcaat aatccaaaaa caaaattatg gagtctcttt gcgattgaac
     1381 gccttaattt aggtgacttt acctttgagt taagtgggcg ggcagaacgt caaaaaatag
     1441 caatggatta tgatgtgaaa ttaattgatc gctggctagg ctttaataca cctatgccaa
     1501 acttggaccc acataaagac aaaggttatt cttatagctt tgcaactcat tggtatttcg
     1561 caccaaacca taagttaaca ttaaatgctg cacatcaaga acgtttacct aatgctcagg
     1621 aactctatgc tcatggtaaa cacattgctt taaatgcatt tgaggctggc aataaaaatc
     1681 taaaaaaaga gcgttctaac caaattgagc tatcattagc ttatgttggc gacaaatggg
     1741 attataaatt aaatctctac cacacccgct atggcaacta tatttaccca ttaactctta
     1801 atgataatcg tggacctaaa tcttttaccg atgaatataa cttgaaagtg aatagatatt
     1861 atcaaggcga agctcgtttt agtggggcag aaggcgaaat tggttatcta tttacaccaa
     1921 attatcgctt agccgtattc ggagactatg tccgtggaaa gttagtcaac ttacctaata
     1981 ttgcaatgag ttacaacatt tggacaggtg aagttgacaa atgggcttct cagccagaca
     2041 tttctgcacc tcgtatacca ccactacgtt taggagcaag atttaatgct gacttcaacc
     2101 taaactggtc tggaatgtta gaatattacc gagtatttgc tcagaaaaaa gtctcgaaat
     2161 acgaacaagt tacccctggc catcatcaag taaaccttgg cgtaacctat agtaatcatt
     2221 ttaatcaaac agaataccaa gtattcctta aagtggataa cttgcttaat cagaaaatgt
     2281 accaacatgc ctcatatcta ccacatattc cacaaatggg tagaaatgca atgcttggaa
     2341 tgaatatcag tttttaattt gtaaatctct acaaaaatat aaccgcttgt aaatttctat
     2401 ctacaagcgg ttactttcag tggatttttt gcaattagag atcgtcaatt accaagtaaa
     2461 ttttatttac cgggccgtga acgccaacta ctttaatcaa ctcaatatcc gcagtcgccg
     2521 atgggcctga gatgatattc acacaagatg gcattctttc acctcgttgg gctttttcgt
     2581 gcagaatttg tgcaagctgt gccacacgag gtaacactgt acttttgcgt aacacaacca
     2641 ccgatttttc gggcaataag ctcactgaac gcccaaattc tttatcggaa aacagtacaa
     2701 taccgccaga ctctgccaag ccatattcac cgtaaaccac accgatatta gcagttctgg
     2761 ctttttcaaa gttggtttca gcttggttga aatcccacac atagctgtct tcgtattttg
     2821 cttgaatggc tgcggtaatc ccaagatcct ttaaacgttg atcgttattc acgatcacac
     2881 tcgccccgcc atatttttca caaatatcaa taatggcttg tggtaaatcc gcctcttttg
     2941 cctctactac atctgccatc atcactcggg caaaatcgat aaactcttgg caaagttgtg
     3001 gttgagggcg atcggttaaa cgggtaatcg cgtggttgtt ttccaacaca ggaattggct
     3061 caggcacatt ttggcgtggt ctgcccatac gctgtgccaa tttatttaag aaattttcac
     3121 gattttgtaa atccattttc ttatcctctg ttattaaacc attcacggaa actttcgcct
     3181 tcggcagtcg gtaaatcacg ggctttcgtc cattcaccta acgccccaaa attcaccggt
     3241 gctttgccgt ttttaatcaa tttgcttgcc actttcgccc ccacttttac gccgactttc
     3301 caaagggttg ggtgtgagtt agcgaagtta aagccaaaaa tagacaagcg ttctgccatt
     3361 ggcgttaagc cggcatccgc aattttctca cggtgtttta agataagctg tgccagtgga
     3421 attttcactg gacaaacact gttacaagcg gtacaaagtg agcaagcata cggcaattct
     3481 ttaaactctt cgtagccacc gagcaatggc gaaataactg aaccaatcgg gcccggatag
     3541 attgaaccat agccgtgacc gccaatttgg cgatacgccg ggcaagtgtt caaacatgca
     3601 ccacagcgga tacaacgcaa cacttcttgg aattcgcttt ctaagatttt agaacgaccg
     3661 ttatcgacaa tgaccaagtg gaactcttcc ggaccatcgg tttcgccttc aagtctagga
     3721 cctgtcagcc aagtgttgta agcggtgagt tttgccccta ccgcactgcg agccagcatg
     3781 gtaattaata catcaacctc tttaaaggtt ggggcgatac gttccatacc cattactgca
     3841 atatgcgttt tcggcacagt tgttgccata cgcagattac cttcgttggt cactaaacaa
     3901 accgagccgg tttccggcac cgcaaagtta cagcctgaaa taccgatgtc tgcctctaag
     3961 aaatcttcac ggattttttg gcggacgaat gcagtcatct cttcaggtgt ttccgaacct
     4021 tgataaccta gcacatcgtg catttcttgg cggattctgt ggcgatcttt gtggattgca
     4081 ggtacaacaa tatgagaagg tttatcgccc acaatttgca ataaatattc gcccaaatcg
     4141 gtttcaacca ctttaatgcc ttctgcttct aaaacgtggt tcatcccaat ctcttcggtt
     4201 accatcgact tcgattttac gattttcttc gcatttttag ctttcgccac gtttttgatg
     4261 taatcagtgg cttcttcggc ggtttcggca aagaaaacgt gtccgccgtt ttgggtgact
     4321 ttttcgctta attggtagag ataagcgtct aaattggcta aaacgtggtt acgaattgct
     4381 ttcgcatcat cacgccactc ttcccagttg cccagctcat ccaccatacg ctgacggttt
     4441 gcaccgattg tttcctgagc cttaactaag gctttacgca caatctcgtt attaacttgc
     4501 tgctcaacac gttgtttaaa cggcagggtg ttagtttgta aataagacat cttattttcc
     4561 tccctgcatt aacacttcgg caatgtgcat cactttgatt ggcttacctt cacggcttaa
     4621 acgaccgcca atgttcatca agcagcttac atctgccccg attaaataat ccggctcatc
     4681 ggtatctaca tttgcgactt tctcttttac catctcgccg gaaatttctg ccattttgac
     4741 cgagaatgtg ccaccaaaac cacagcaagt ttcttggttt ttgattggta ataactctaa
     4801 ccctttaacg tgctgtaata aagcaatagg ctcatcttta atccccagct tacggaataa
     4861 gctgcaagac gggtgataaa ctgctttgcc cggtaaataa gccccaacat ctttcacgcc
     4921 cagtttgttc acaataaaat cggttaaatc atagaaacga tcagccactt tcttcgcacg
     4981 ttctgcccat tctttttcgc caaagcgttc aaaatgatcc ggataggttt tgatcgcata
     5041 tacacaagaa cctgccgggg cgacaatcgg gtaatcatta gcttcaaagg tttcaaccaa
     5101 gtttttcata cctgctaaag cttgcttagt gtaaccgctg ttgatcgcag gttgtccaca
     5161 gcaaccttgt ttttctaaga aagtgatttt acaacctaat ttttccaata aaagcacagt
     5221 attttttgca acccctgctt tcattacatc tgcaatgcag gttacgtaaa aattaacgtt
     5281 cataaagaac tcccacagta aatataaata agaattaaac tcaaaaaatg ccgttctaag
     5341 acggcgaaag gaagaggtgg atttgcaaaa aatttgctaa atctcaccgc ttcctttcta
     5401 aatcaagtaa gctgattatt aactcattat aggttataga acataggtac tataaacaat
     5461 gccgaaatcg cagcaataac gccatacacg aacattggca cggctgtttt cttaataata
     5521 ttgccttctt gtttctcaat gccggtaaca gaacacacag ccacgatgtt gttaatacac
     5581 accatattcc ccattgcacc accaactgat tgcaatgcaa gaattaaggt aacagataac
     5641 ccgacttgct gtgccgttgc atattgtact gttccgaagg ttaagttaga taccgtattt
     5701 gaccctgaga agaacgcacc aattgcacct aagaacgagg caaataatgt ccaagattga
     5761 ccggtaaatt ctgcgaagtt tttaccaatg atctgaacca ttgagtctac accaccaatt
     5821 aacattaatt ttaccatcac aatggcacct aaaagtgcta agaatggttt tttcacttgt
     5881 ttaaatgaag tgccaaaaat ctcttgagta tttttacctg ataccgagaa aatcggtaag
     5941 caaattaata cggtcacaac aaatggaatc aacgcaggaa catacagtaa tttatagcta
     6001 gttgctacat tcgtacctaa aatatttttc agtgcaaaaa ttaagccttg gctaatttca
     6061 aagttagcga aaccaagcga actgacaatc caagctgttg catcatttag cattgctttt
     6121 aatggaagtt gctgaatacg ggtgattacc aaaatgaaga tcagtaaccc tgttggtaat
     6181 aatgcttttg ccacttcacc aaaggtcgct ttatcgccgt caaggtggtt ctcgcttttc
     6241 gctaaaccaa tacccatatt tgctacccag actgacacca ataaaccaat cgccccggca
     6301 actaatgatg ggaattcgta gttaaattga gcaataatga agtaaggaat gacacaggca
     6361 aaaatgctga tataaataaa cacgatattt tgacgaattt ctttccagct cacaattaaa
     6421 cgcaatgcca taactggaat aataaacgca gcaatagagt ggatcagtgc agtaatagaa
     6481 ccaatttcaa gcacttgtgc atcggttagt aaaccatctt ttaataatgg tcccatacca
     6541 aaccaagttg gtgtgccaac cgcaccaaat gacaccggca cagagttcat tactaaggct
     6601 aacattgcca cttgtaacgg tttaaagcct aaaccaacca gaattggagc tgcaattgcc
     6661 gccggcgtac cgaaacctga tgcgccttca atcataaatg caaatgccca accgataatc
     6721 atcaactgtg ccaccggatt cgggttaatt gtccctaacc atttacgcat agtgttggtt
     6781 gcacctgaaa cttcagagaa acggttaaat aaaatcgccc cgaaaataac ggtaattggg
     6841 gttaatacat cacctaaacc ggcaataata ttggcaaaga ttaacgtggt atcattacca
     6901 aaataggtaa gctgaagcac aaaaattaat aacgccgtaa gtggtaaagc cacataagac
     6961 ggtaacgcgt tacgttttac cattaaataa atgagcaaaa caattggaaa tacgctcagg
     7021 aatagagcca tactgcacct ctttatatga ttataaaatg acctaactgg tcggataggt
     7081 gcgaattgta ctcttaaaaa aaactaatgt aactaggttg ttacaatttt gtgatctagc
     7141 tcgcattttt aatgattgta tggttaaaaa agagccatat ttattttcat ttaatactta
     7201 atagttagcc ctatttaaga catttttacc gaatcgagca atatgcaatt aattaacaaa
     7261 aaaaggccgc ttgtagatca cagatcaaca agcggtcttt tttaggcaaa aatttgcaaa
     7321 ttaaacattg aaacggaagt gcattacatc gccgtcttga acaatataat ctttaccttc
     7381 caaacgccat ttacccgctt cttttgcacc ggcttcacct ttattgtcta tgaagtcttg
     7441 gtaagcaatt acttccgcac gaataaagcc tttctcaaag tcagtgtgaa tcacggctgc
     7501 tgcttttgga gcggttgcac ctaccgaaac cgtccacgca cgcacttctt ttacccctgc
     7561 ggtaaagtag gtttgtaagt taagtaaacg gtagcctgca cgaataacac ggtttaagcc
     7621 cggctcttca atgcctaaat cttgtagaaa ttccactttt tcttcgtcat caagctcggc
     7681 aatttccgat tcaatcgctg cacacaccgg tacaaccacc gccccttctt tttcggcaat
     7741 ttcacgcaca cggtcaagat aagggttatt ttcaaaaccg tcttcgttca cgttggcaat
     7801 atacattgtc ggttttaaag ttaagaagtt gtagccctta atagcgtgca gttcatcctt
     7861 atctaaatct accgaacgaa tcataccggc attttcaagc acaggtagga ttttttccat
     7921 aatcgataat tcaaattttg cgtctttatc gccacctttc gcacgttttt gtaaacgctg
     7981 aatggcacgc tcgcaactgt ctaaatcggc aagtgccaat tcggtattga tgatttcaat
     8041 atcatcagct gggtcaattt tccccgcaac gtgaacgatg tcatcatttt caaaacaacg
     8101 cacaacgtgg ccaatcgcat cagtttcacg aatattggct aagaatttat tacctaaacc
     8161 ttcgcctttg cttgcacctg ccactaagcc ggcaatatcc acaaattcca ttgtagttgg
     8221 taacactcgc tcaggtttca caatttccgc caacgcatct aagcgagggt caggcattgg
     8281 taccacaccg gtatttggct caatcgtaca gaacggatag tttgctgcct caatacctgc
     8341 tttagttaat gcattgaaaa gggtcgattt accgacattt ggtaaaccca caataccaca
     8401 tttaaatccc attttttgtt ccttagaatt cccctctccc cttgcgggag agggataaat
     8461 ttgagcttcg ttcagaagcg aaaatgaggg agagggcgaa attgcaataa tttcctcaaa
     8521 tatgaccgct cccctctctc tgaaaaatac ttctgaacga agtatttttc ggtctctctc
     8581 ccacaaggga gagagtttta atttgcttta aaactattta aacggttagt tgccttaacc
     8641 attccgtctt taaataaaac ttctacgcaa cgtgcggctt catcaaccgc actattcagt
     8701 aatgtctgat cgcttggtga aggcttgccc agcacataat tcgccactaa gtctttatgc
     8761 cccgggtgtc caataccaat tcgcacacgg taaaactctt tattattgcc aagggcggca
     8821 ataatatctt tcaagccgtt atgaccaccg tgtccgccgc cttttttcaa tttcaccgaa
     8881 ccgggtggta aatccaattc atcgtgagcg accaaaattt cttccggttt aatccgataa
     8941 aaattggcta acgctcccac tgctttacca cttaaattca taaaagtagt cggcactaat
     9001 aaacggactt cgccttgagc ggtattaatt tttgctactt tgccaaaata tttcggctct
     9061 tcttttaggc taacgttata tattcgggca agttcgttaa tcagccactc gcctgcatta
     9121 tggcgggttt cttcatattt tacccccggg ttcgccagcc cgacaattaa tttaatttct
     9181 gacacaatct tgtctcaatt catttaattt aaaaggcagt attttagaga aaaaccgcta
     9241 ttttctcaag gcaaccatta atcatattgt ctatacggat ttggtacgca ttgatacttc
     9301 gctaacatcg attcagtgaa atcggtgcgt gaagcagcgt tatcattgtt taaactaacc
     9361 acaccaattc gcttgcctct gcaatcccct ttagcaataa aggcaagatt ataacccgcc
     9421 tcacgggtat aacctgtctt actcactaat gcctgatagg attgggaacg aaccatactg
     9481 ttggtgtttt tcatagagaa ataacgacca cctgcataaa cactcactaa tggcgaatta
     9541 gacaattgct gaatttcagg cttacttgcc gcatagcctg ccaatttagc aagatcaacc
     9601 accgttgaaa cattatccga agataagcct gagctatcac caaagtaggt ttgagtcata
     9661 ccgatttcac gggctttgct gttcattcga gccaaaaatt gggctttatt caaatgtgtt
     9721 gcgtgggcaa gggcgtgagc ggcatagtta tcggagcgaa ctagcatcgc ttttaacaat
     9781 tcactacagg caatgttaag atttttcggc aatgggctgg tcgtgccttt taagaaatca
     9841 gcatctgacg gcaaaatttg ggtttggcaa ctcgccccat agcggttttc ttctaagaaa
     9901 acgactgctg tcattaattt tgtgaccgaa gcaatcgggc gaactaaatt gaaattctta
     9961 ccttccaaaa atttcttttg gtttaagtca aacaccacat aagcggaatt ttcggttgga
    10021 atataagcag cggttgcttt aatccgtggt gtgcttttcc tttttgccgg ctgggaggaa
    10081 caggcgctta acaccagagc cgcaatcata acaggaataa attttttcat cataatagat
    10141 tcatcgataa taaagtcaaa gctggttatt ctaccctgtt tccaaaattg tgccaaagca
    10201 agcggtcgat ttttacaaaa tttttgcaaa tctagccgat tttgcaaaat ttccgccaaa
    10261 tttaaccgct tgccctctcg cctcaaatca gcgaaaataa cgcttaattt tttggcggac
    10321 tttccgccct ttttatttta attggttgag aaaaatgtca tacccacaag aagttaataa
    10381 acgtcgcacc tttgcgatta tttcccaccc cgatgcgggt aaaaccacca ttaccgaaaa
    10441 agtattgctc tacggaaatg caatccaaac tgccggctcg gtaaaaggca aaggctcggc
    10501 acaacacgct aaatccgact ggatggagat ggaaaaacaa cgtggaattt cgattaccac
    10561 ctccgtgatg cagttcccgt acaatgattg cttggtaaac ttactcgata caccggggca
    10621 cgaagacttc tcggaagata cttatcgtac tttgactgcg gtagatagct gcttaatggt
    10681 tatcgactcg gcaaaagggg ttgaggaacg caccattaaa ttaatggaag tgacccgctt
    10741 gcgtgatacg ccaatcctaa cctttatgaa caagctagac cgtgatattc gtgacccgat
    10801 ggagctgtta gatgaagtgg aaagcgtgct gaaaatcaaa tgtgcgccga tcacttggcc
    10861 gattggttgc ggaaaattgt ttaaaggggt atatcacctt tacaaggacg aaacctactt
    10921 ataccaaacc ggacaaggtc ataccattca agaagtacga gtggttaaag gcttaaataa
    10981 tccggaactg gatcaagccg ttggcgatga tttagcccag cagttgcgtg atgaattaga
    11041 gctggtacaa ggcgcttcgc acgaattcga tcacaccgaa tttatcaaag gcgagctgac
    11101 accggttttc tttggcactg cactgggtaa cttcggggtc aatcatttcc ttgacggttt
    11161 aaccgaatgg gcaccggcac cacaagcccg tcaatcggac gaacgtgaag tttcaccaag
    11221 cgaggaaaaa ttcagcggtt tcgtatttaa aattcaagcg aatatggatc cgaaacaccg
    11281 agatcgagtt gcttttatgc gtgtcgtttc aggtaaatat gaaaaaggaa tgaagcttaa
    11341 acacgtccgt atcggcaaag atgtggtgat ctccgatgcc ttaaccttta tggcgggcga
    11401 ccgttcacaa gccgaagaag cctacgccgg cgatattatc ggcttgcaca atcacggcac
    11461 gatccaaatt ggtgatactt tcacccaagg cgaaaatttc aaattcaccg gtattccgaa
    11521 cttcgcccct gagctgttcc gccgaatccg cctgcgtgat ccgctcaaac agaaacaact
    11581 gctcaaaggc ttggtacaac tttccgaaga gggtgcggtg caagtattcc gtccgttaat
    11641 caacaacgat ttgatcgtgg gagcggttgg ggtgctacag tttgatgtgg tggtttcacg
    11701 gctgaaaacc gaatacggtg tagaggcaat ttatgaaacc gtaaacgttg ccacagcccg
    11761 ttgggtcgaa ggcaaagatg ccaaaaaatt tgaagagttc aaacgcaaaa acgaggcaaa
    11821 ccttgcccta gacggcggag acaacctcac ctacattgct ccgacaatgg tgaacttaaa
    11881 cctcgcccaa gaacgttacc ctgacgtaca gttctttaaa acgagagagc actaaaacca
    11941 ataggggcga aaaatctttc gcccctacaa ataaagcaca agcggtcaat tttttttccg
    12001 aattttacaa tactaggcat tctgttcctc aaatagccta aatattcccc tatcaacaat
    12061 ccttatcttg agattattct gcctattaat taaccactca aaaataccct cgcagaaaac
    12121 tctacttttt ttatggaaat atgctaaagt tcgccaatat tcatagccct gattttttta
    12181 tggagaaaat aaaatgaaaa aatggttgat tccattaact gtcgcagcgt tctgtgtttc
    12241 tgcttgcgat gataagaaca gcactcaagc aaccgcagaa aaaccgcaag tagagaatac
    12301 tcaatcgcaa aaaaatgcgg aaatattacc gcttgcaacc gtggttgccc catgggaaat
    12361 caatagcctt gacccgaatc aatcaggcgt aattttccag cgtatgaact tagcggaaac
    12421 attggtcgaa gccgatctta acgggaattt aattccggca ttggccactg actggcgcag
    12481 taacgaagag ggaacaatct ggcgttttac cttgcgtgaa ggggtaaaat tccataacga
    12541 tcaagtactt accgcacaag cagtggtaaa tagtttgaat atcgcaaaaa gcaaaccggg
    12601 tgtgttagca aaagccttta tcaaggaaat tcgagcggta gataacaaag tggaaattga
    12661 gctaactaaa gcttttgtgc cgtttcctcc ctttttaaca cactacaccg ccttaatttt
    12721 ggcacctgaa agctataatg aaaaaggcga agtgacccaa attatcggta caggtgcgtt
    12781 taaacccaca aaaattgaag ctccgcagaa attggaagcg gtgcaatttg agggctattg
    12841 gggcaaaaaa ccgcaagttc agcaagccaa ttatttagcc agcagccgta gcgaaacccg
    12901 tatgttaatg gcacaaagcg agccgtcatc actggtattt aatttagata ccgccagtgt
    12961 agcaaggctg aaagccgatc ctaacctgca attagtcagc ggatctattg cccgtactat
    13021 tcagttgaaa atggacgtgg caaagccgtt ttttaacgac ttagcgattc gccaagcctt
    13081 atcgcaagcg attaatcgca aggcgattgc tgagcaggtc ttaaaaattg agaacggagc
    13141 tgccgatcaa attttaccga aagcctttgc cgactggcgt gttgataccg cagaacaagt
    13201 ggtcgatatt gcaaaaatta aacaaaatct gaccgcttcc ggctatacct ttgatgaaca
    13261 aggtcgctta accaaagacg gcaaaccgtt tagctttacc atgcgcacct tctcagatcg
    13321 tcctgaatta ccggtgattg ctactatctt acaagctcaa tggaaacaaa ttggcgtgga
    13381 agtgaatgtt tcggtgggta atttcagcga aattccggcg gggcatcaag acggcagttt
    13441 agaaatggct ctttatgcct taaattatgg caaaacctta gatccatatg gcgtaattgc
    13501 ctccgacttc gccaatggtg gcagtgattg gggggtaatg aattggcaaa atactgaggt
    13561 agacaatgca gtcaaatcgc tcgaaaccga gcgtgacccg caaaaagcga aagcattaaa
    13621 gcaaacggtt agcaaaatta tttacaatga tttgccaatc attccggtgg tttattacca
    13681 acaaaatgtg gtggcacata aagaagtaaa aaatgtgacg ctagatccat ttgaaagacg
    13741 cttctttttg gagttattaa gtaagtagtt taattcaaaa tactcctcgc tttagaaaag
    13801 ggaaggtagg atttttcagt agtaatttgc gctcttaggt gaataaatag tgacagaatt
    13861 atcgtttttt ctcatttttc acctattttc tccgcttatt tcttctgcca aatcttccct
    13921 tcccctcttt gctaaagagg gggatcagaa cgcataaaat catcttttta ataaatgaaa
    13981 taatacaatg cacaaaattc tcttccgccg tcttatccaa attctactgg tgatttggtc
    14041 ggttggcaca ctcacattta tcctcacccg ccaactttcg ggtgatatgg cataccgcat
    14101 tgctgccagc cgctatggtt atgatcaagc agatagtgct gctgctgagg ctgtgcgtgc
    14161 cgagctggga ttagaccaac cttggtggca aagctacttc agctggctaa gtgacttggc
    14221 tcaatttaat ttaggcaaat cattggtgac cggtgatccg gtctggtctg aaattcagca
    14281 ccaattcggg cataccttaa gccttgcgat tgtggcactt atcttagcaa tccttatcgg
    14341 gcctccgctc ggtttgttag ccgcccgtaa gccaaacggc ttttttgacc gcttgacact
    14401 ggtattcagt accctgtttc gctccgtgcc ggcatttatt attgcgattg gcttgattac
    14461 gctgttttcc gctcaactaa aatggctacc tgccggcgga tacggctgtt ggcaacattt
    14521 tatcttgcct gccttaacgc ttgcgattgg cttgagtacg gtttcggtac gagtcacccg
    14581 ttctgcaatg gttcaggtaa aaggctcaga attttaccaa ttttcacaat taaaaggctt
    14641 aagccgttgg catacctttt tacgtcacgg tttgccgaat attgccgtgc cggtcattgc
    14701 ctaccacgca gtacaattag tttatttaat tgaaggcgtt gtggtggtcg aaagcctatt
    14761 tgcttggccc ggcagcggac acgcactggt tcacgccatc attgcccgtg atgtgccgat
    14821 gattcaaggt acaacgctcg tgatgggcgg attgtttgtt gtattaaaca ccattgccga
    14881 tctattaagt gcttggattg acccacgaat taagcgatag gacatcaaga tgaaaatttc
    14941 aatttcacaa tatttaggcg gcactattct ccttgcaatg ttgggatttg cctttttaca
    15001 gccttatttt tacccgatgg atattggctt tcaagattta accaatatcc tttccaatcc
    15061 aaatgaaatc gcttggttcg gcaccgatca tctcgggcgg gatatgcttg cccgtcttgc
    15121 ctctgctatt cgtctttcgt ttggcttatc actgtttagc gtgatttgtg ccttaattgc
    15181 aggcttaatt accggcatta tggcaggctt tttcggtggc tggattgacc gcattttcag
    15241 ctttatttgt gatctagtga tggcactccc cggcttactt ttagtattgc tctttgccgc
    15301 cctttctccc ggctcatttt ggacgctcta tttagggatt tcattggtaa tgtgggtgga
    15361 atttttccgt gtgatccgct ctatcagttc aacaatggca aacagctcgg aaattcaagc
    15421 ctcacgccta atgggaatgg gctggtttta tagcttcaaa cgccacttat tgccccgttt
    15481 attaccgatg attgccactt tatcggcatt ctcgctcggc aatgcgattt tagctctcgc
    15541 cacacttggc tttgtcagcg tagggcttcg cccgcctaca gcagaattag gcttgatgat
    15601 gaccgaacta ttcccttact actacgaagc accgctgata tttttgcaac cagtggttgc
    15661 cgttttctta atggtactca gcttacaatt attgtctaga aaaattaaat aatgcgtagg
    15721 ggcaggtcct gtgcctgccc aaaattctta ttatatttat gggcgggcac agggcccgcc
    15781 cctacagtaa taaaatgaag atgaaattac tcgatatcca aaacctatct gttgaaaccg
    15841 aaaacagatt acagctggtc gaaccgatta gcctacaatt aaaggcagga aaaaatatta
    15901 ctatcttagg cgaaaccggc tcaggcaaaa gcctgctgat tcaagcgatt atgggggcgt
    15961 tacccgacgg cttaatcgca agcggtgaaa tttcggtaaa aaattgcaaa atttccaccg
    16021 aatccgaccg cttgcaaaca ttgtggggta aaaccttggt aatgctgcca caagagcctc
    16081 gccgctcgct taatccgatt atggcaatcg gcaagcagtt gtgggaaagt tttcactatg
    16141 tggcaggcaa accatcatct caagccaaaa cggaaagcaa agcctattta gccaaacttg
    16201 ggctgggcga atcggttgaa aactacccac accagctttc cggtggaatg gctcaacgtg
    16261 cctcttttgc gattgcaact gccgccggtg gcaaaatttt acttgccgat gagccgacca
    16321 aagggcttga cccaatcagt aaaggcaaag tgattgaact gttaaaatcc gcctaccaaa
    16381 acggtggagg cttgctcacc attactcacg atattgaagt tgccgagcaa ctcggtggca
    16441 ctattttagt gatgaaaaaa ggcgaactgt tggagcaagg tgaggcaaaa gcgttgttaa
    16501 ataacccaca acacccttac accaaagcac ttatcagtgc cgatccaaaa cattggcaac
    16561 cattgcaaga tctgcaaaat ttaagccaaa aacaaccgct tgtttcggtt aaaaatttga
    16621 gtattgcccg tggtaagaaa acgctgttta gcaacctttc ctttgactta cacaaaggcg
    16681 aagtgcttgg gattgtcggg catagtggga ttggcaaaag ctcgcttgcc gatgtacttt
    16741 gtggtttgct taagccgaaa tcgggcgagg ttgtgtggca cagccacagc cataaaaaac
    16801 accaagtgtt gaagctttac caagacccac cggaagcctt tgctccgaat gtcagtctaa
    16861 aaaccttgct tgatgatgtg attaacaagc accaattaga tcgactgccg attccaagtt
    16921 tactgcaaca actttcgctc aacccagaaa ttttgcaacg caatgcggaa aatgtctccg
    16981 gcggcgagct acaacgagta gcaattttgc gagccttgct cttagaaccg gtactactgt
    17041 ttgccgatga agtcacttct cggcttgacc caatcacaca acaagaaacg atagaattgc
    17101 tgatcaacca gtgccgagcg agaaattgca gtctgatttt ggtcagtcac gatccttatc
    17161 taattgagaa atcgtgcgat aaagtgatta atttggaaga gtatgtgggc taacaagcgg
    17221 ttcaatttct gagatttttt gcggctctaa aaacaaaaat gcgaagacat cagttcttcg
    17281 catttttctt acttattcct tattgcccag ccagcttctg ccgtacaatt tcaaacagac
    17341 agaccccggt tgcaactgag acattcaaag aagatactga gcccgccatt ggaatgctga
    17401 taagctggtc gcaatgctca cgggtaaggc gacgcattcc gtcgccttct gcccccataa
    17461 ctaacgcaat cgagccggtt aattttgctt cataaatgcc cgattccgcc tcacctgccg
    17521 tgccgacaat ccagacatta tgccgttctt gtaaatctcg cattgtgcga gccagattgg
    17581 taactcgaat cagtggcatc acttccgctg ccccacaggc gactttgcga gcggttggtg
    17641 taagctgagc agatttatct ttcggcacaa taaccgcatc aacccctgcc gcatcagcgg
    17701 tacgcaaaca agcccctagg ttgtgagggt cggtcacgcc atctaaaatc aacaagagtg
    17761 gatttttctt ttggcttaag atcgcctcta aatcgtgttc attcagctct ttttgtggca
    17821 cgactctggc aataatccct tgatgcactt caccttgcga tttgttatct aaggtttggc
    17881 ggttcacttg ttgaattgcc acccctaaac gttgtaattc atttaatagt ggcattaagc
    17941 gtttatcttc acgccctttt agcaccagca cttcaattaa acgctcaggt gcattatcca
    18001 aaaaggcttt cactgcgtga atgccataaa tttgttcgct catattttat ccttaataat
    18061 tgggcgaacc catcagctcg cccatataaa tacctaacta aagcaacatc ttcacaattt
    18121 tatccaactt aaccctgccg aattttttca gcaatttacg cacattttca gggtaatcgg
    18181 ttaaaacttc caaatcactg tagtgagtta aaatctgcgt atgttggcaa atttggttta
    18241 actccgtttc tgctttttca cttaattgat gttgaggatc ggaaattaaa attgcatttt
    18301 cggcatctaa ccgccacgct cttgggttaa ggttattgcc ggtcagcaaa atatagcggt
    18361 tatccaccca aacccctttt aagtggtagc tgttttcgcc atctttccat aagcgaatgg
    18421 ttaactgttt attttgtaca taaccgtcca accgttttgc aaaggctcgt aagttctttt
    18481 catacaaata aggcagagcc gatgccatcg tgaatttttc gtccggcttg gtgtagaaat
    18541 cattagcggt tttatccccc acaataattt caaccgattt gccgtttgcc aatagccatt
    18601 caatacgggt tctcagagaa tgcggaaaat taaaatacgg agtgcaaatc gttaatttct
    18661 gctcagtttg ataaaacaac gcttcaatca ctttatttaa ctgattctta cgtcgcccta
    18721 agcctactaa aggagaaacc gctaagcgac cattttcagc aacaccgtta aataaatacg
    18781 cttcccgact taattgtttg cggaaatgct taatttgcgc acgaatttca gccgttttcg
    18841 ggcgattttc cgtatctaaa cgttttaccg cttcattggt taaaagatgc tgttgaataa
    18901 acgtcaccca gctatcggca agaactttat tttcaatgac gtggtaacgg tcataacggt
    18961 aacgttcaaa ttgatgcaaa tacacattat taatgcttgc tccgctatac aaaatcgtat
    19021 cgtcaaatac gaagcctttc aaatgcaata caccaaacac ttctcgtccg ttaatcgaca
    19081 caccgtaaaa ggcaatctct tgccctgccg gtaaaccttg ttcgtattta acttttgcat
    19141 accagtcggc gttagataaa ttctctgcct caccaatacg cccacgttgg gctcggtgcc
    19201 aatcaaccaa aatgttaatt tccagttcag gattatttcg cttcgcttga tataaagcag
    19261 ctaatacttc ctgcccggct tcatcttttt caaagtaaag agcggttata taaatacgct
    19321 tttttgccgt ttgaatcagc tgtaaaattt gttgtttaaa cgctttgctc gaggcgagaa
    19381 actgaacctg ctctgccact tgtggtaagt atggcaggct tttcaatagg tattcagctt
    19441 tacgttgttt gttcaaaatt aacatcattg attccaaaat tttcaatcgt tgcctgctat
    19501 tttacactga aatcgccaat aaagcgattt tcgcttaacg gcattgatag ctggtcaaac
    19561 gattaggatc ttctccggtt tgataaattg cgactttcgg ataagcacaa agcgggatct
    19621 gcttggcttt attagggtaa agctcaccgg ctttggcggc aatactttcc ggctccagtc
    19681 ctttctcaac ccaattttca agggcagtga gcatatcaaa atcattcacc gttgcccctc
    19741 gcccacaatg gttcattgcc gacacgaaaa acaattttgc aaaatgttgc ggattttcga
    19801 ccgcttgttg taggctttga taccaatttt tgagatcaac tgccgaaaaa atcgggtctg
    19861 aaacgccttg ataaatcagc attttgccac cgttctgctt aaaagcggat aaatcaactt
    19921 gatctgtatc gtgaatgctc cctaccgctt tcacttgttc gctggcttga tccaaatcta
    19981 cgctgagtgg atcacggctc ggcactctgg gggctaaata gtaatgggtc aaacttttca
    20041 atcccatttt aaaactaatg ctgttgggct gagcggtttg gctatcacct aatttccaat
    20101 cccgccagcc tttagcgtta atgccggaat catacgccca agggctataa atcagctcgc
    20161 ctcgactgtt tttcgccccc tcgaaaatcg ttttgattaa agcgactttt ttctgcccca
    20221 gttgctttgc caccatttcc ggctggaaat cacactgttc ccacgcatta attaaaccgt
    20281 ctgctaagcc gtctaactta tcgcaacgtg ttaatacgcc attggcaatc acatctaaat
    20341 cttgttgagt gagggcttgg gataaaattt tgtcgccatc accattcttc ggagcaactg
    20401 ccaacaaggc tcgattatcc catacttccg ccaagactga acgggaaacc cgaaagccgg
    20461 ggctgcctgc aatcacaccg tcaaattcct gtggataacg cattgccgcc atcatcgcct
    20521 cacgaccacc attcgagcag cccataatgt aattgtgctt gctcggtttt cggtaaaatt
    20581 cggcaatcaa ctgcttggca accgtggtca ctttgccgat agaggcatag gcataatttg
    20641 agcgagcttc gggatctgcg gtaaacacta aatctcgagt ggcgtgacca ctgtcgttac
    20701 tcactactgc atagcctctg tttaagccat ttgcaccact cgccccgtgc ggatagagct
    20761 taccaatggc agggaaaatc accccaccta caccgcccgc cccctgaaat aagaattttt
    20821 cattccattg ttcgggtaaa cgtagctcaa attgaatacc gtaaggaaca ttatccacct
    20881 ccacccgttt tccaatttca ccttgtacta aacagtaagc cggcaactca gcagatttct
    20941 caacccattc agctttataa atagccgttt tttccggcga gttagatttt aacgcgacac
    21001 attgttcagc catagaatta gccaaagcag tgtgagaaaa aacggagaga aaaataaaaa
    21061 gaaaagcgat tattttcatc atttacatca atacaagcgg ttatttttcc gaaaattttt
    21121 gcaaatttta aactgagtgt ctatctatcg ctggaaaagc taaggcagag tttcctctgc
    21181 cttagaaaga tgaattgaat tacattttaa gcaaacaagc gtttttcgcc ttcgccggct
    21241 acgttttcca cacaacgtcc gcaaacttct tcgtggccag agtgcgagcc gatgtcggta
    21301 gcataatgcc agcaacgagg gcatttctca ccatctgcat tttccacttt tactgcgagt
    21361 ccggctaatt cgccttccgc aatatctgct tccgccagtg gtttaacaat cgcttgtgag
    21421 gtaatcagca caaagcgtaa ttcattgcca agttgttcta ataacgggcg aatttcatca
    21481 ttggcgaata ccgtcacctt ggcttctaag ccagcaccaa ttactttgtc tttacgggct
    21541 tgttccagca cacggttgac ttccgcacgc acttttaaga tttgttgcca gtaagcatca
    21601 tctaatttat cttgctcggt taaaccgaat aatccggtgt agaattcttc ggtaaagaca
    21661 aattcacttc tgccttccac ctgcggtaag tagccccaaa tttcatcggc tgtgaaggat
    21721 aaaatcggtg caatccaacg tactaacgct tctgcaatat gccataacgc tgtttggcag
    21781 ctacggcggg caaggctgtc ggctttggtg gtgtattggc ggtctttgat aatatctaag
    21841 tagaaagacc ccatttcaat cgagcagaaa cgcattaaac gctgtactac cgtgtggaat
    21901 tggtagttat cataggcttc tttgatgtcg ttttgagcct ctaaagcaca agccaccgcc
    21961 cagcggtcta aggcgatcat ctcttgcggt tgaactaaat cactttttgg atcgaaaccg
    22021 ttcaagttcg ccaataagaa acgggctgtg ttacgaatac ggcggtatga ttccccggca
    22081 ctgtttaaaa tattgtgcga aacggtaatc tcaccggtat agtcggtgga ggcaacccat
    22141 aagcgtaaaa tatctgcacc gtttttgttc cacacttcac ttggcacaat tacgttgcca
    22201 agcgatttgg acatttttct gcctttctca tctacggtaa aaccgtgagt tagcacttgt
    22261 ttgtatggtg ctttgccgtt agtagcagtg gaaagcatta aagatgacat aaaccaacca
    22321 cgatgttggt ctgaaccttc taaatacata tccgctgaat tgccgttaaa ttcagggcgt
    22381 tgttctacaa cagaggcata ggtcgatcct gaatcaaacc acacgtctaa ggtatccggc
    22441 actttgcggt aatctttggc ttcttcaccg agcaattccg caggatctaa atcccaccac
    22501 gcttgaatgc ctttttcttc tacacgtttc gccacttctt caattaattc taaagtgcga
    22561 ggatgtaatt cttcggtttc attatgcaca aacatcgcca ttggcacgcc ccaagtacgt
    22621 tggcgtgaaa tacaccagtc tgggcggttt gccaccatcg tatcaatacg agcttcaccc
    22681 cagcttggga tccaacgcac cgatttgatt tctcctagtg cttgctggcg taagccttgg
    22741 gtttccattc cgataaacca ttgtggggta gcacggaaga taatcggggt tttgtgtctc
    22801 caacagtgcg gataactatg cttgatgcgg gataatttta ataatgctcc cacttcttgt
    22861 aatttttcga ctactttatc gttggattca aacacaccta agccggcaaa gaacggggtg
    22921 tctgctttga atttaccgtc attggaaatt agccctgcca tttcaatgtt atatttgcga
    22981 gcgaccacga agtcgtccgc accgtgatcc ggtgcagtat gcactaaccc tgtaccaccg
    23041 tctgtggtaa cgtggtcgcc aaaaataaat ggcacgctgt aatcatagaa tgggtggtta
    23101 aagcgtaata attctaagtt ttcgcctttg gtggttgcta aaatctcagc agattcaacg
    23161 cctgctgctt ttgcaacatc ttcgactaaa tcgaccgcta gtaacacacg ctcatcacct
    23221 aattggacta aggcatagtc taattcaggg ttgatcgcaa tcgcacggtt agacggaata
    23281 gtccaagggg tagttgtcca aataaccgca gataatgccc ctctaccttt accctgtgcg
    23341 ttgaattttt cttctaccgc atttacgtcc acagcattaa aacgcacata aatagaggga
    23401 gaaactttat cttcatattc cacttcagct tccgctaacg aagatccaca atctaagcac
    23461 caatgtaccg gttttgaacc tttgtataaa tgcccgttcg caatcacttt gccgagcgtg
    23521 cgaataatat tcgcctcagt gttaaaattc attgttaggt atgggttatc ccaatcacct
    23581 aaaataccca tacggataaa atcggctttc tgaccttcta cttgttcttt cgcatagtca
    23641 cggcacgctt ggcgaaactc ggcagccgaa attttctcat ttggtttacc aacaatccct
    23701 tctactttca gctcaatcgg caaaccgtga cagtcccagc ccggcacata aggggtatcg
    23761 aaacctaatg cggttttcga tttcaaaatc atatctttta aaattttatt cactgcgtga
    23821 cctaagtgaa tattaccgtt agcatacgga ggaccatcat gcaaaataaa ggttttcttg
    23881 cctttcgagg cagtacgaat tttttggtat aaatttttgt cataccaatt ttttaacata
    23941 tcgggttcac gtttcgcgag atccccacgc ataggaaagc ctgtttcagg caagtttaag
    24001 gtgtttttgt agtcaatagt cattttttta tttctcgtta aaattatctg ttttatgcct
    24061 agcacggcat agccgtacta ggttaagcat agctcagccc ctctggggct ggaaactaga
    24121 aaggctcacc ttgcaaattc cttaaaaaat tcaaccgctt gcaagcgatc tttctcaatc
    24181 tgggctttta gtgcttcaaa gtcgggaaat tttatttcat tgcgtaattt ttttaaaaag
    24241 atcacttcaa tcgcctcacc gtaaatagag gcattgaaat caaaaatatg cacttctaat
    24301 aacggcttag taccgttaat ggtcgggcgg ttgccgacat tggcgattcc gttaaaactg
    24361 ccctgtttgg tcttcacttt taccgcaaat accccttgaa tcggcgtaac caaacgattg
    24421 agcataatat ttgcggtagg aaaaccaatg gttctgccga gtttattacc gtgtgcaacg
    24481 cgtcccagaa tcgaataagg cttgccgagt aatttctctg ccaaatctaa ctcattgttt
    24541 tgtaaggctt ctcgcactaa tgagctgcta attctttctt cgtttaagct atgggtatgg
    24601 ctttcttcca ccgcaaagcg atattttaag ccggcattgc gtaaagtttc aaaactgccc
    24661 gcccgttttg ccccaaagcg aaaatcatcg cctacactta aatagcgtac tttcagtctt
    24721 ttagcgagca aatcgctgat gaaatcgtct gccgaaattt gagcaaattt ttcactaaaa
    24781 cgcacgcata gcacaaaatc cacaccggct tcttccaaat attttagctt atctcgcagg
    24841 cgcattaagc gggcgggcgg gttacaagcg gttgaatttc cacttttttt tgcaaaaaac
    24901 tctcgaggtt gtggctcaaa taacatcaca actgagggca atcctaaatc taaagctcta
    24961 tcacaaagac gagccaaaat attttgatgc ccaagatgca caccatcgaa attcccgata
    25021 gagagaacac agccttgatt taaagcgatg tgtttgtcta agttgtggaa acctcgaata
    25081 agttgcataa aagataaacc attttataag tgaaaattgc tgtgattata acgagaaatc
    25141 tacaaaaaag gaaaaaaatt caatctgtta tattttttta gtgctgaaag tggtcgtgta
    25201 gctaattatt aaagcaaaga tatgctataa aactgctatt tatacaataa aaatatattc
    25261 aaatgctaca ttttactata tgataatcat caaaaaatcg agggaatcat tatgacagat
    25321 tttgcttatc ttcaacaaaa gcgcaaacag cttaaactca aagtgaatga tatttgtgaa
    25381 caagctgggg taacccgagc ttattttaat cagttagtaa gcggaaaaat caaaaatcca
    25441 agcgccaata agcttaaagc cttgcattcc gttttagata tcgtagaaga tagcaaccag
    25501 cgttccgggg ttatttttgg caaattctat cctattcaca caggtcatat taatatgatc
    25561 tatgaagcat ttagtaaagt agatgtttta catgttattg tttgtaccga ttctgaacgg
    25621 gatttacgtc ttttccagga aagtaaaatg aaacgaatgc cgacaaatga agatcggcta
    25681 cgctgggtac agcaaatttt taaataccaa caaaaacaga tctttattca ccatttagtt
    25741 gaagacggta ttccgagcta tccaaatggc tgggaagatt ggtctggtcg tgttaaagcg
    25801 ctatttgaag aaaaaagcat taatcctact attgttttta gtagtgaaat tcaagataaa
    25861 gaatcttatg aaaaatattt gaatctagaa gttcaacttg tcgatcctac tcgtgaatcc
    25921 tttaatattt cagcaacaca aattcgtaat aatccttttc aatactggcg ctttattccg
    25981 aaagaagttc gtcctttctt tgttaaaact attgcgattt taggtggtga aagcagtggt
    26041 aaatcagtgt tggtgagcaa attagcgaat gtatttaaca ctacctctgc ttgggaatat
    26101 gggcgtgagt ttgtgtttga gcaacttggt ggcaatgaac aagcaatgca atattccgac
    26161 tatccgcaaa tggtgcttgg acatcaacgc tacgttgatt atgccatgaa acatgctcat
    26221 aaagtggcta ttattgatac cgattacatc acaactcaag cgttctgtat tcagtatgaa
    26281 gggaaggctc acccgtttct ggattcaatg atccgcgaat atccttttga tgtgacgatt
    26341 ttactttcta acaatacaaa atgggtagcc gatggtttac gcagtttagg atcgaaaaaa
    26401 cagcgtcaac agtttcaaca cctactgaaa aaactactag aaaaacacca tattccttat
    26461 attaaaattg aatctccaag ttatttggat cgctacaatc aagccaaaga ggtggtagaa
    26521 gctattttaa atgaagaacc aatcccatta cagtttaagc aatataatat tcacgaattt
    26581 gaataactgc cacaggaaat aacatgatac tttttgcagg cgatccacac ggtagctacg
    26641 agcatcttta tccgattcta caacagcaga cggaggaggt agctttagtt attctaggcg
    26701 atcttcaatt gactactcct gatgaattag atcggctttc gcagtattgt gatatttggt
    26761 ttattcatgg taaccatgac agtaaaaccg ttgctgcctt tgatgctatt tggaatagta
    26821 gctggaaaga acgcaatatt cacggtaaag tagttgacat tcaaggaata aaaattgcag
    26881 gtattggagg ggtcttccga ggtcatattt ggatgccgcc caatcgtcca atgttttttg
    26941 atcccatcca tttttgccaa tactctgctc cggaaaaaat ttggcgtggt ggtattccat
    27001 taaggcaccg ctcttcgatc ttcccttctg attttgaagc attggaaaat gaaaaagccg
    27061 atattttaat tacacacgaa gcaccaaagc cacaccctca aggcttctct gtaatcaacc
    27121 agctagcaag aaaattaggg gcgagcaaaa ttttccatgg ccactaccat gataatttta
    27181 attatggcaa tctaaatgtc agcagagaat gtgctattta taatatcggc tttcgtagcc
    27241 tagcggatat taatggaaat tatctaattt taggtgttga tgatcgagag aaatagccaa
    27301 aaatttgact gaattaaaca aattgtcatt ttacccttcc cattcataaa tttataagta
    27361 aaatgcgaga aatttgtaac ataaacgtta ttaaacagaa tttataaatt aaatcagagg
    27421 tttaaaagat gaagatccca caaatcttaa ttgttgagga tgagttagta acaaggaata
    27481 tgctgaaaag catttttgaa ggagaaggat atcaggtatt tcaagcatct aacggcgagg
    27541 aaatgcactc tgttctgagt acaaatgaaa tcaatcttgt gctaatggac attaacttac
    27601 cgggaaaaaa tggattaatt ctcgcccgag aaattcgaga gaatatgaag ctaccattaa
    27661 tgtttttaac cggtcgcgac aatgaaattg ataagatcct cggtttagaa ataggtgccg
    27721 atgactatat cactaaaccg tttaatcctc gagaattgac tatccgagcg agaaatttat
    27781 tgcaacgaac gatgatagat aaagaaaacg acgttgtaaa agagcaatct gaaattgaaa
    27841 gctatcgctt taacggttgg atcttagaca ttaacagtca tagtttaatc tcaccagaag
    27901 gtgaggtaaa taaattacca cgtagtgaat ttagggcttt attacatttt tgccaacatc
    27961 ctggaaaaat tcaaacacgt gaagatttat tgaaaaaaat gaccgggcgg gaactaaaac
    28021 ctcatgatag aaccgttgat gttactattc gccgtattcg taaacatttt gaagaccacc
    28081 ccaatacccc agaaattatt gtcaccattc acggtgaagg ctaccgtttc tgtggtaaca
    28141 tcgaacctta atcaagatag gagtaatttt atgaaaaaat taactattgt cgcattaact
    28201 tgcttatttt ctacccatct attagccgct cctgtcggaa atacatttac tggcatcggt
    28261 gtcggtgtag atgtaactac aacaaaatac aaagttgaag gagtaaaagg caaggattcc
    28321 acaggtccgg cattagttgt cgattatggt attgagcaag gcaataactt tgtaggcgtt
    28381 gtacaaggaa aagcaaaagt aggtagtaca aaagtattta gcgatgtaaa acaaaaaaat
    28441 aaatatacta tagcttatca acaaggttat cgtgttggat ccgatttatt accttatgta
    28501 aaagtagatg ccagctcaag caaaatcggt aatgaaacct atcgtggctt tggtttcggt
    28561 gctggtgcaa aatatgcagt ttcaagcgat gttgaattag gtgcagaata cactcgcgat
    28621 aatttaaaac gtagcggcac aaaattaaaa ggtaacgctt tcaccgcgaa tgcaacttat
    28681 cgtttctaat cttagcggta aagttttctg aaaaaataac cgcttgtaac acaaaagagc
    28741 ctgaagtgat tcaggctctt tgccttttaa tataatactc gggctcgaat cgtgccttcg
    28801 atcgctttta aacgttgtaa tgcttcatca acattgtcgc tctctacatc aattacaaca
    28861 taaccgatag ctgcatcggt ttgtaaatat tgagcggcaa tattcacatt tgattccaca
    28921 aaaatctggt taatttgatt taacatacct gggcgattct cgtgaatatg taataaacgt
    28981 ttggtattag tatgaagcgg taaggatact tcagggaaat tcactgccgt cacggttgaa
    29041 ccgttatctg aatatttcac aaatttattg gcaacttcgg tgccgatatt tgcctgagct
    29101 tcagaggttg aaccaccaat atgtggcgtt aaaatcacgt tatcaaactt gcacaatggt
    29161 gacacgaacg ggtcattaat tgatgccggt tcttccggaa atacgtcaat cgccgcacca
    29221 cgcaatgagc cgtcttcaat ccgagcggct aatgcgtcta aatcgaccac tgtaccacga
    29281 gcggcattaa ttaacaccga gccttctttt aattgagcaa tgcgttctgc actcattagg
    29341 tttttagtcg agtcgatttc cggaacgtgt agtgaaatca tatcgcaggt tgaaagcaaa
    29401 tgctctaatg tcggcacttg ctgtgcatta ccgagtggta gtttgttttc aacatcatag
    29461 aaataaacct gcataccaat ggcttcggca agaatactaa gctgtgaacc gatatgacca
    29521 tatcccacaa tacctaattt cttgccacgt acttcgtttg cacctgctgc cgatttattc
    29581 cacaccccac gatgcacttc cgcatttgca gtcgggactt tacgcattaa taaaatcatc
    29641 tctgccagca ctaattctgc caccgagcgg gtatttgaga acggtgcatt gaataccgga
    29701 atacctcgtc ttttcgccgc attcaaatca acttggtttg taccgataca gaaacaacca
    29761 atcgcaatta atttcggagc ttgagccagt acttcttcgg ttaaaaaagt acgcgagcga
    29821 ataccaacaa agtgtgcatc tttaattgca tcaattaatt cttgaccgtc taatgctttt
    29881 ttatgcactt caatattggt ataaccagcc gctaagagta catcaattgc gttttgatgt
    29941 acgccctcaa gcagaaggaa tttgatcttg gatttatcca aagaaatttt agccattttt
    30001 tgctcctaag tatttgtatt tgcaataata aattattcta aaataactgc accttcaggt
    30061 gtgccgacaa tggttacatt ggcaaaacgt tgtgcaaaaa taccgttagt caccacgcct
    30121 gcaatattat taatggtatg ttccattttc aacggctcca taattttaaa gttatgtaca
    30181 tctaaaatca cattgccgtt atcagtgacc acgccctcac ggtattccgg cgaaccacct
    30241 aaggctacga gctgacgagc cacataagaa cgagccattg ggatcacctc caccggcaga
    30301 gggaaagttg aacccagcac atcaacttgt ttggatttat ccacaatgca gataaatttt
    30361 ttcgctaatg aactcacgat tttctcacgg gtaagtgctg ccccgccacc tttaatcatc
    30421 gccccttgtg gcgtgatttc atcagctccg tcaatataca catctaattc cgtcacttca
    30481 ttggcactga atacttcaat gccgatatca cgcaaacgct gttccgaggc tttagaggca
    30541 gcaaccgctc ctttaatctc atctttcatt gaagcaaggg catcaataaa acagtttacg
    30601 gttgaaccac ttcccacccc aacaatagtg tccggtttta caaattttaa tgcagcttgt
    30661 gccgcaattt ttttcatttc ttgttgatcc atttttacct ccacttgtag ggcaaatcat
    30721 catttgccca cttcggcaag gcgaaaaaaa ttttcgccct actacatcta ttctacacat
    30781 atatgtaaca agcggtcata tttggcaaat tttttaccaa aaacgaccgc ttgtcattag
    30841 ttacgtttta ctgcttcaac aatctcttcc gcacagcttt gagcaagtac agcatcttcg
    30901 cactccacca tcactcgaat taatggctca gtgcctgatt tacgcaataa aatacgccct
    30961 ttgcctgcca agcgtttttc cacatctgcc gctaccgctt tcacttcgtt actttcaagc
    31021 ggatttgccg cccctttctc aaagcgaaca tttagcagaa cttgcgggaa cagaggcact
    31081 gcttttgcca aatcattcag gcttaatttg tggcttgcca ttgctgctaa tacttgcagt
    31141 gaggcaataa taccatcacc ggtggtgttt ttatctaaca cgataatatg cccggagttt
    31201 tcgccaccca gtttccagcc tttttcttta agctgctcta gtacatagcg gtcacccacg
    31261 ttagcacgag agaatggaat ggctagctct tttaaagcta attccaagct catattactc
    31321 attaatgtac cgactacacc gccttgtaat ttgcctgaac gtagagcttc tcgggctaaa
    31381 ataaatagaa tttggtcgcc atcaacttta ttgcctaagt gatcgaccat aatcaaacgg
    31441 tcgccatcac catcgtaagc tagaccaaca tccgcacctg cttctaccac cactttttga
    31501 agtgctttaa tatccgttgc accacatttt tcgttgatgt ttaaaccgtc cggcttagta
    31561 ccgatttcaa gcacttctgc ccctagctca cgcattacat tcggcgcgat atggtaggtt
    31621 gcaccgttgg cacaatccac cacaatttta tagccttcaa ggcttagttc agacgggaaa
    31681 gtgcctttac aaaactcgat ataacgtcct gcggcatcat taatacgact ggcacgacct
    31741 aaatttgctg aatctacgca atccataggc ttatcaagca ttgcttcaat cgcttcttca
    31801 atttcatcag gtagtttttc accaaccgac gagaagaatt taatgccgtt atcgtaataa
    31861 ggattgtgag aggcagaaat cacaatgccg gcttccgcac ggaaagtacg ggttaaataa
    31921 gcaattgccg gagtcggcat cggaccaacg aatactgctg ataaaccggc tgcggttaaa
    31981 ccggcttcca gagccgattc caacatataa ccggaaatac gggtatcttt accgattaat
    32041 acttttttcg tgccttgggt tgccaacact ttacctgctg cccaaccgag ttttaatgca
    32101 aattcaggtg taattggaaa tttacctact tcaccacgca caccgtctgt gccgaaatat
    32161 ttacgagcca ttctaattcc taagattgat aaaaatttac tttaaaaaat attgatatgc
    32221 cggactttcg ctcacatttt ggaagcggta acctagctgt tctaaatgtc ggtttaattc
    32281 tacttcatcg cctctgttta atgcaaatgc ggcaagaata tcgccataat cggctccgtg
    32341 agctcggtaa tggaataacg agatatccca gttagtcagc atttgtaaga attttagcaa
    32401 tgcccctttc tgctctggaa attcaaagct atagagttgc tcatattgaa tggagcttgc
    32461 tctaccgcct accatataac gaatatgggt tttggcaata tcatcgtccg ataaatctgc
    32521 cacatcatag ccgttttgtt gcagatcttt aataatctct actttttctg ccgagcctga
    32581 aattcgcacc cccacaaaaa tacaggcttg tttatcatcg gaatggcgat agttaaattc
    32641 cgttaccgca cggttgccta aaatctcgca gaattttaag aaactacctt tctgttcagc
    32701 aatggtgact gccaataaag cttcacgttt ctccccgatt tcacaacgct ctgacacaaa
    32761 acgtaaggtg tggaaattca cattcgcccc ggaaagaatg caagctaagt ttttatcttg
    32821 taattgatgc tctttcacat attttttcaa accggcaagg gaagttgccc cggacggctc
    32881 ggaaatcgca cgcacatttt caaaaatcaa cttcattgag gcacagattt catcattatc
    32941 caccaacacc acatcatcaa catattgctg acacaggcgg aaagtttcat cgccaatgcg
    33001 ttttaccgca ataccgtcag caaaaagccc aacccgttct aaatcggtcg gttgcccttg
    33061 ctttaaggcg tgatataagc aagcagaatc tttagattcg accccaatca ctttaatatt
    33121 cggcatcacc tgcttaatta aaaccgcaat gccggcaatt aagccgccac cgcccactgg
    33181 aataaataca taatctaaat ccggcttttg ttgcaccagt tctaagccga ttgtgccttg
    33241 ccctgcaatc actgccgggc tgtcaaacgg gtgaatgaag gtcataccca attcggtgga
    33301 aagctcaatc gctttcgcct tagcttcatc aaaattcgcc ccataaagca acacttcacc
    33361 accatagcca cgtaccgcat caaccttaat tgccggtgtg ttttgcggca ttacaatcaa
    33421 ggctcttaaa cctaaatgtt tggcagaaag tgccacccct tgtgcgtggt tgcctgctga
    33481 agccgcaatg actccagcct ctttttgtgc tttggataaa tttgagatca tcgcaaaagc
    33541 acctcgcaat ttaaagctgt gaaccggctg tcggtcttca cgtttgataa aaatagagtt
    33601 gcctaaccgc tcagacagtt tttccatttt ctgtaaaggg gtcacttgcg ctaagtcata
    33661 aatatttgag cttaaaatcg agcgtaaata gtcgatagcg gattgggaat gttgtgtttc
    33721 gttcatcatt ttgaaaggtt atttattgtt agattgagat aaagacattg gtaaatttcc
    33781 aaggaaaatt gaccgcttgt ttggttattt agcaatggct ttaacaggga atatttcctc
    33841 tcgcccgttt gcgggagaga gacagcttaa aatttcgttc agaaatttta agcagagaga
    33901 ggggaaacct tggatatccc cctctccctc cgcaaatctt cgatttgctc caccctctcc
    33961 cgcaagcggg gagaggggaa atcacaaagt tagtgatgac caccgcaacc acagccaccg
    34021 tgtccgtgat gatggtgatg atcgtggtcg tgaccgccgc agcaaccatc gtgatcgtga
    34081 tgatgatcgt gcccaccaca accgcaaccg tgttcgtgtc cgccgtgaac gtgtccgtgt
    34141 gcgatttctt ccgctgtcgc ttcacgaatg ccaaccactt ccacagagaa aagtaattcc
    34201 tgaccggcta acatatggtt accgtccacc acaacttcat cgccatctac ttcggtaatt
    34261 accaccggta gcggacctaa atccgtgtcc gcaataaaac gcatacccac ttctaattca
    34321 tcgacgccca taaatacatc tttcggtaca cgttgaacca tattatcgtt gtactcgccg
    34381 taaccttctt ccggtttcac acgcacttca aacacatcgc ctacagcttt gccttcaagg
    34441 gctttttcta agccttctac caagttgttg tgaccgtgta aatattctaa cggttggttt
    34501 accggtgctt catctactaa tacgccttct tgagtacgca cttgatatgc aatgcttggc
    34561 actaaatctt ttgtaatgtt catattgaat cctttaattc atcggtttta taaaatagca
    34621 agccattgta acgctttatt ttatatttgc aatctatctg gaaattttaa ccgcttgtca
    34681 gtaaattagt cgataatatc aggggttacg gtgtctacca catcaactgc ggttcccacc
    34741 actccaccaa ccaccgaagt taccaaacaa ccacttagga aaatagttgc tgaaatcagc
    34801 ccacatactt tgattaattt tttcatttta aaatcctttc aaaaacaaaa aacagcccta
    34861 atcaagacta gagctgcatc atatttattc gcttaaatta tttttcttca gcgataaagc
    34921 gataaactac cgcaccgata attgcaccga caatcggagc aacccagaac aaccataatt
    34981 gctcaatcgc ccagctgcct tggaataacg ctacaccggt tgaacgtgcc gggtttactg
    35041 aggtattggt taccggaatg ctgattaagt ggattaaggt taaagccaaa ccaatagcaa
    35101 tcggagcgaa acctgctgga gcacgtttat cggttgcacc cataatgatg attaagaaga
    35161 atgccgttaa taccacttca attaataatg ctgctgttaa gctatagccg tgtggcgaat
    35221 gctcaccata accgttgccg gcaaagcctg ctgtagcatc aaaagtcgga acacctgaag
    35281 caatggtgta taacactgca ccggcagcaa tcgcaccgat tacttgggca atgatataag
    35341 gcactaaatc tttagcgtta aaacgaccgc cgactaataa accgattgaa accgccgggt
    35401 tgaagtgacc acctgaaata tgaccgactg catacgccat tgttaatacg gttaaaccga
    35461 aggctaacga aacgcctgca taaccgattc ctaattcagg aatgcctgct gctaaaactg
    35521 cactgccgca accaccaaac actaaccaaa atgtcccgaa aaactcagca aaatattttt
    35581 tcatttttta tccttaccct aaagggtgaa tcacacataa gtgtattaac tttccgaatg
    35641 ctataaaaca tagccaataa aatatgagta tactaaaaaa agtaaagacg catat
//
LOCUS       DANLVT010000010        35125 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.010, whole genome shotgun sequence.
ACCESSION   DANLVT010000010 DANLVT010000000
VERSION     DANLVT010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 35125)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35125)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35125
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.010"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            172..888
                     /locus_tag="PXC99_000418"
     CDS             172..888
                     /locus_tag="PXC99_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5416911.1"
                     /translation="MKKTLLTLLFGCVVTAQAQDIKFVMEPSYPPFEMTEEKGEIIGF
                     DVDIANAICKEMNANCTFHSQPFDSLIQSLKQKQFDAAISGMGITEPRKKQVLFSEPY
                     FPSSAAFIAKKDTDFAKVKTIGVQNGTTYQHYLAKEKKEYNVKSYASYQNAILDVQNG
                     RIDAIFGDVPVLAEMARKHEGLDFVGEKINNPNYFGDGLGIATHLKNQVLVDQFNAAL
                     KTIKENGEYQKIYDKWMGGK"
     gene            complement(958..1836)
                     /locus_tag="PXC99_000419"
     CDS             complement(958..1836)
                     /locus_tag="PXC99_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF535 domain-containing protein"
                     /protein_id="HDL5416912.1"
                     /translation="MKNLYKWPAAQSLYPNQGKKSYAGKRFRYRLRSWLHHSKIKQFE
                     QFVTQNPQLIPLLNARPNYSYPVAHRFLDKRFSAKQRLQKITDNLLFLPQKLAHLPPL
                     WEQAVNFGEIIADFELWLNINEHQPMEGFWALELRHRPTNQLVYLLTFGKLDEALLIA
                     VIQGPNFEGSKELVKQLTKSCHGLRPAYLMVETMKALTAVLGYQSLLGIPQKYQNKSR
                     WVQSKRYVVDYDAIFAESGGKPGNYWQLPLELESKKIDEIPSKKRSMYRKRYEMLANL
                     KQTMELMLKTYTGLNG"
     gene            complement(1912..3237)
                     /gene="hslU"
                     /locus_tag="PXC99_000420"
     CDS             complement(1912..3237)
                     /gene="hslU"
                     /locus_tag="PXC99_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HslU--HslV peptidase ATPase subunit"
                     /protein_id="HDL5416913.1"
                     /translation="MMSMTPREIVSELDAHIIGQKDAKRAVAIALRNRWRRMQLPEDL
                     RQEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD
                     LADVSMKLVRQQAVEKNKMRAQDAAEDRILDVLLPPAKDQWGNVQESDNNSTRQTFRK
                     KLREGQLDDKEIEIDVAAQVSVEIMTPPGMEEMTSQLQSLFEGMSPSKTKKRKMKIKD
                     ALKVMLDEEAAKLVNPEELKQQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQ
                     RDLLPIIEGSTVNTKHGMVKTDHILFICSGAFQVARPSDLLPELQGRLPIRVELKSLT
                     KEDFERILTEPNASLTLQYRELMKTEGVEIEFTKDGISRIAESAFRVNEKTENIGARR
                     LHTVLERLMDGISFDASERRGEKIIIDENYVSEALNDVVENEDLSRFIL"
     gene            complement(3494..4015)
                     /gene="hslV"
                     /locus_tag="PXC99_000421"
     CDS             complement(3494..4015)
                     /gene="hslV"
                     /locus_tag="PXC99_000421"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HDL5416914.1"
                     /translation="MTTIVCVRKDGKVAIGGDGQATLGNCIEKGTVRKVRRLYKDKVV
                     TGFAGSTADAFILRDLFEKKLELHQGHLVKSAVELAKEWRTERALRRLEAMMIVANDS
                     EFLLVSGSGDVIEPEQDVLAIGSGGNYAKAAALALLRTENNLSAKEIVAEALKIAGDI
                     DIYSNYNHVIEEV"
     gene            complement(4076..4789)
                     /gene="sfsA"
                     /locus_tag="PXC99_000422"
     CDS             complement(4076..4789)
                     /gene="sfsA"
                     /locus_tag="PXC99_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA nuclease SfsA"
                     /protein_id="HDL5416915.1"
                     /translation="MKFPPLSHGILLRRYKRFLADIQLPNGEQITLHCPNTGAMTGCA
                     NPGDTVWFSTSHNPKRKYAHTWELTQTQAGDFICVNTLRANQLVQEALENQWISELAD
                     YQHILPEQKYGSENSRIDFLLKSDLLPDCFVEVKSTTLLTENGVGMFPDAKTERGQKH
                     LRELTKIAEQGLQAVIFFAILHTGIERFEVAKQIDPKYAELFAQAIAQKVQVLSYKMA
                     ISLENGQPIAATLTKKCEF"
     gene            complement(4805..5674)
                     /locus_tag="PXC99_000423"
     CDS             complement(4805..5674)
                     /locus_tag="PXC99_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL5416916.1"
                     /translation="MLYLLIATLIWASSFIVGKVAISAFDPVQIMQIRLTLAAFIALP
                     FFIPAYKKIQKNQHIKVWLISFLTFPLYVILQFSGLKLTSAASAVALLGLNPLLTVLV
                     GYFCFKKQATRLDFILSLFACLGILIMASGSDDSGSINVLGLLLVTLGSLSFIVGMYL
                     SKEILQSVKVIDLTKIMLVQGAITALPITLLFAENWQLPTSLSAWASVAYLGIICTSL
                     AILLWNKGISQSSPILAGILLALEPVFGLLMALVFLSEQLSLVTWVGIIIVICTALLS
                     VLLPMMKRYKRLI"
     gene            complement(5675..6067)
                     /locus_tag="PXC99_000424"
     CDS             complement(5675..6067)
                     /locus_tag="PXC99_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL5416917.1"
                     /translation="MKSPILGFHHIALIVSDYEKSKHFYTRILGAEIIAETYREQRAS
                     YKLDLRFKDGSQIELFSFPETPPRFTSPETCGLRHLAFRVENIEYAIAFLEQHQLPHE
                     GIRIDEITGKRFTFFRDPDDLPLEFYEV"
     gene            6151..7296
                     /gene="mutY"
                     /locus_tag="PXC99_000425"
     CDS             6151..7296
                     /gene="mutY"
                     /locus_tag="PXC99_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HDL5416918.1"
                     /translation="MNSNSPFPLAKAKASDPFAKAVLAWFEQYGRKHLPWQQNKTLYQ
                     VWLSEVMLQQTQVATVIPYFARFMERFPTVIDLANASIDEVLHLWTGLGYYARARNLH
                     KAAIQIRDEFGGEFPTRFDDVLALTGVGRSTAGAILSSVLDAPHPILDGNVKRVLSRY
                     FAVEGWAGEKAVENRLWQLSESVTPDTQVADFNQAMMDLGAMICTRTKPKCLLCPLQE
                     NCKTNAMQAWDSFPAKKPKKTLPERQTYFLVLKSGSKVLLQKREAKGIWGGLFVFPQF
                     ESLEALKRSDFMQNLQISQQLTAFRHTFSHFHLDITPVLVETDLKKTSENSPLVVEEK
                     AGNYLSKVSSNADYWYDLHQHNEVGLATPVKRILDELAFSVKNEIKD"
     gene            7300..7569
                     /locus_tag="PXC99_000426"
     CDS             7300..7569
                     /locus_tag="PXC99_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HDL5416919.1"
                     /translation="MARTVFCEYLKQEAEGLDFQLYPGELGKRIFDSISKQAWSEWIK
                     KQTMIVNEKKLSMMNPEHRKLLEQEMVNFLFEGKEIIIEGYKPVE"
     gene            7586..8677
                     /gene="mltC"
                     /locus_tag="PXC99_000427"
     CDS             7586..8677
                     /gene="mltC"
                     /locus_tag="PXC99_000427"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltC"
                     /protein_id="HDL5416920.1"
                     /translation="MKKYAKYLPMLAIIPFLIACGSNKSTKKPKSTRVDYSKDTNGLD
                     ILAGQFSHNIDDIWGSNELLVASKKDYVKYTDKFYTRSHISFEEGVITIETLGNQNHL
                     RNSIIHTLLMGRDPKGIDLFASGDAPISSNPFLNGQVEDQFGRNITNVAIANDFATYL
                     LQNKVQTRRLKNGQTVSFVTIKMVAGHIEVRARQYLPLVRKMAKQYGIEPSLILGIME
                     VESAFNPYAISYANAIGLMQVVPRTAGRDIFARKGMGGQPSREYLYNPSNNIDAGTLY
                     LTILRDEYLDGIEDPVAKRYAMISAYNSGAGAVLRVFDSDRYSAIDRINDLSSDAVYR
                     ILTTAHPSSQARNYLRKVTTAREKYRNIR"
     gene            8809..8884
                     /locus_tag="PXC99_000428"
     tRNA            8809..8884
                     /locus_tag="PXC99_000428"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8842..8844,aa:Phe,seq:gaa)
     gene            8890..8965
                     /locus_tag="PXC99_000429"
     tRNA            8890..8965
                     /locus_tag="PXC99_000429"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8923..8925,aa:Asn,seq:gtt)
     gene            9136..9211
                     /locus_tag="PXC99_000430"
     tRNA            9136..9211
                     /locus_tag="PXC99_000430"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9169..9171,aa:Phe,seq:gaa)
     gene            9217..9292
                     /locus_tag="PXC99_000431"
     tRNA            9217..9292
                     /locus_tag="PXC99_000431"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9250..9252,aa:Asn,seq:gtt)
     gene            9628..11019
                     /gene="ffh"
                     /locus_tag="PXC99_000432"
     CDS             9628..11019
                     /gene="ffh"
                     /locus_tag="PXC99_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HDL5416921.1"
                     /translation="MFENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVA
                     LPVVRDFINKVKERALGVEVNKSLTPGQEFLKIVQSELETAMGEANEELNLAAQPPAV
                     ILMAGLQGAGKTTSVGKLAKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFF
                     PTETSQKPVAIAEAALKHAKLNFFDVLIVDTAGRLHVDGEMMEEIQQIHAVLNPIETL
                     FTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVG
                     EKTDALEPFHPDRVASRILGMGDVMSLIEDIQRSVDQEKAEKIAAKFKKGDEFTLEDF
                     REQLIEMKKMGGMMSMLDKLPGAKNLPDHVKSQVDDKMFMKMEAIINSMTLKERANPD
                     IIKGSRRRRIALGSGTQVQDVNKLLKQFDDMQRMMKKMRKGGMAKMMRGVKGMMGGGL
                     GGLGGLGSMFGKR"
     gene            complement(11159..11917)
                     /locus_tag="PXC99_000433"
     CDS             complement(11159..11917)
                     /locus_tag="PXC99_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL5416922.1"
                     /translation="MIPLERQREILRLINNNGVASINFLAEQLKVSHMTIRRDIQKLE
                     EQGKVSLVSGGVQSLERLIMELPHDDKSMLFQEQKSAIGSLASQLIPSNTTIYLDAGT
                     TTLEIAHRIIDRNDLLVVTNDFVIAHYLSNSGKCDLIHIGGSVCKENLSTTGSLAAEF
                     LKNLSIDMAFISTSSWNLKGLTTPNENKIPVKKAILEASKQNILVTDSSKYGKVATFF
                     VCPLTVFDQIICDKGLFENVRDALKGLSIKLDLG"
     gene            12091..12996
                     /locus_tag="PXC99_000434"
     CDS             12091..12996
                     /locus_tag="PXC99_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HDL5416923.1"
                     /translation="MSQKYSVAVIGLGAMGMGAAKSCIAAGLDTYGVDLNPNYLETLK
                     AAGAKKVGTSAVDFAAELDAVLLLVVNANQVNAVLFGENGLAQHLKQGTVVMVSSTIS
                     AQDAKNISQKLTDLGLVMLDAPVSGGAAKAAQGEMTVMASGSSEAFEKLKPVLDAVAG
                     KVYNIGEEVGLGATVKIIHQLLAGVHIAAGAEAMALAARAGIPLDLMYDVVTNAAGNS
                     WMFENRMKHVVEGDYTPLSMVDIFVKDLGLVNDTAKSLRFPLHLASTAYSMFTEASNA
                     GYGKEDDSAVIKIFSGIELPKKEGK"
     gene            12998..14239
                     /locus_tag="PXC99_000435"
     CDS             12998..14239
                     /locus_tag="PXC99_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005754893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four-carbon acid sugar kinase family protein"
                     /protein_id="HDL5416924.1"
                     /translation="MLGIIADDFTGASDIASFLTENGLKTVQMNGVPKTTLNSQVDAI
                     VISLKSRSNPVEEAIQQSLQALDWLKQNGCSQFYFKYCSTFDSTEKGNIGPVTDALMA
                     ALDTDFTVVTPALPVNGRTIFNGYLFVGDVLLNESGMRNHPITPMKDANLVRLMDAQS
                     QGKTGLVAYADVIQGAERVKARFAELKQQGYKYAVVDAADNSQLAVLAEAVADFQLVT
                     GGSGLGAYMAAYRSGGKKGTNAFVPSKGKTVVLSGSCSVMTNTQVAAYQQKAPSYFLE
                     AEKAIQDPNYVETLYQWVIANLDGDFAPMVYATVPPEKLKEIQTQFGGDKASHAIENT
                     FAKLAEKLQAAGVTNFITAGGETSSIVVQQLGFSGFHIGKQIAPGVPWLQAVEKPIFL
                     ALKSGNFGKEDFFSFAQEMFV"
     gene            14236..14868
                     /locus_tag="PXC99_000436"
     CDS             14236..14868
                     /locus_tag="PXC99_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014668373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HDL5416925.1"
                     /translation="MTEQEQKIEMVNLARSLFERGYTVGGAGNLSVRLDENRILVTPT
                     GSSLGRLEADRLSVLDMQGNVLSGDKPSKESVFHLAMYQKNPACQAIVHLHSTYLTAL
                     SCLENLDTDNAMRAFTPYYVMRVGKLPVIPYYRPGDINIARELGERALDGKAFLLANH
                     GVVVTGSDLRDAVDNTEELEETSKLYFILQGQKVRYLTDDEVNDLKNRGK"
     gene            14870..15646
                     /locus_tag="PXC99_000437"
     CDS             14870..15646
                     /locus_tag="PXC99_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005547735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxypyruvate isomerase family protein"
                     /protein_id="HDL5416926.1"
                     /translation="MPKFAANLTMMFNEVPFLDRFEAAANAGFKYVEYLWPYDYPAAE
                     LKAKLEQYGLKQVLFNTAAGDVAQGEWGVSAIPGREADSHRDIDLALEYALALGCENV
                     HVMAAVVPEGEDREAYKQTFIKNVQYAADKFKPHGINVLLEALSPEVKPNYLLKSQFD
                     TLEIVEAVNRDNVFVQLDYFHAQNVDGNLSRLTDKLKGKFAHIQIAPVPDRHEPDEGE
                     INYQYIFNKLDEIGYEGYVGCEYKPRAETTSGLGWFEQYK"
     gene            15699..17057
                     /locus_tag="PXC99_000438"
     CDS             15699..17057
                     /locus_tag="PXC99_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntT protein"
                     /protein_id="HDL5416927.1"
                     /translation="MSNEMLILIGLASVVALLVIMIKGKVHPFLALGLVSIAVALTAG
                     IPMSKVIPTLISGMGSTLGSVALIVGLGAMLGKIIEKSHGADVLANWLLQRFGEKNAP
                     FALGMTGFIFGIPVFVDVGFIVLLPIIFSVARRLGGNILVYSLPIGLAMLLVHVLVPP
                     HPGIVAGAQNLNADIGFVLGIGLVAALPAYLIGQKFIPFFTKNNFVKVVTSTDLLQHQ
                     KDLIKEKGIELPSFGKVLAMISFPLILIMLGTVTATTLPKEHIVREVFSMVGSSPFAL
                     FVAVCLSAYVLGFRYGWTKHKLEEVLESALAPIAGIILITGAGGMFGKVLDASGVGKA
                     LADVLANTGLPLLVLSFILSALLRAAQGSATVATITTTTILAPAAVAAGYNDLQLALL
                     TAAIGAGSMTLSHVNDSLFWVWTKFFNVPVSVGLRTWTFLTTIFGVIAFAVVGIIWML
                     FV"
     gene            17119..18459
                     /locus_tag="PXC99_000439"
     CDS             17119..18459
                     /locus_tag="PXC99_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase"
                     /protein_id="HDL5416928.1"
                     /translation="MLKKTLLFTLLLSHSLYAEDMIQENKSANITLLAEITAQGQKIN
                     GVALEYPDNVLSGSDLRQLYQVKTALDSAEKENRSVLKAYVNNEPKVTALPQAGKFVI
                     IELDTADKNAATYSVKDANKAPMKFKSKDENGNIVETEKVQAVKIPEFFANRLIYSAE
                     QKGLLKLTSGTTLGKTEWTQTAEPDKIKTPYLDDFVAKQVSLDQSGNKLNYRLYSPLQ
                     KNGEKYPLVIFLHGSGQVGSDNLAHLLSSKGAIATLPYAPSFVLAPQYDQVFDPFDNA
                     AKGQKGGIHWQTENRINLVLKMIDETLKANPQIDTTRIYINGLSRGAEGGLNLLLARP
                     NFFAGALLMSGREAYTNEWVDGNATKTNLAAIKHIPIWFFHSKEDKVSPVKGSRINYR
                     ILKDELNAPNVKYTEFTFEQAGDNGIVNNNPHNTWDAVYNSPEVIGWLLQQKRH"
     gene            18471..19160
                     /locus_tag="PXC99_000440"
     CDS             18471..19160
                     /locus_tag="PXC99_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005577085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HDL5416929.1"
                     /translation="MFMYLSHPLDPKDLAWPGEPVVEVTRCTDVGEETPFSSFITKLP
                     NHCGTHMDAPRHFVKDGLSINELPIEYFCHKEVALIEIPKGEAEGITKEDLLPYVDIL
                     SKVSFAFLRTGFEKYRTENPAIYQNECPYISTGAGQYLSDTFPNLKGVGIDFLALGSP
                     SSRVPDAENPKNCHRAILGYYTGRFTTVIEDMHLAELPKNANIKQFFNAPWRIKGLDS
                     SQVTCIVELQQ"
     gene            19317..21134
                     /locus_tag="PXC99_000441"
     CDS             19317..21134
                     /locus_tag="PXC99_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme anaerobic degradation radical SAM
                     methyltransferase ChuW/HutW"
                     /protein_id="HDL5416930.1"
                     /translation="MIIKDTHWTSQQASPNAFPERQALMPIWGGKNIERNQWQSLWLE
                     QAPNALLQDGLAYFHIPFCASHCIFCGFYRNAWKENYSQIYTDRVISELRYESSLWRG
                     QGKIHAVYFGGGTPTALHTEDLVRLIRACYRYLPLAEDCEFTIEGRISHFDIDKAKAC
                     IEAGVNRISIGIQTFNSEIRKRLGRKHSGEEAQTYLKALSELNAVIVADLIFGLPNQT
                     DDIWQNDIEIATSLPISGLDIYAFNNYPFLPINRLIEHGKLPAPAGFDTQSLHYAYAV
                     EKLKAQGWQQVSNNHFAFPNRGERNRYNTLVKSNMPCLAFGSGAGGNFGGLSYQVQSD
                     LKTYLDSPLDQKSLSFLSKHGEHKALLGVIQHSMELGYLDTTPFEQNAKAEKLLQQWE
                     ALDLLKREKNQVYLNTSGRYWSPTLIRKLMLTLPQSSKDNNMITPLTKELENKLRTNL
                     KENPGQILEMLAGMNQCSLESVINCLPKEMVMQTGGERFVEIMQAIAGWNEAVTFIIH
                     TPDAIAEVTAKLPQGKIGRGFYNFEHGVDGGIHGHLRYENCAAIYLLDRPFMGKRTVA
                     LTFINQSGEAMFKIFVGRDEQGQLRENQIQAMRKLIGGC"
     gene            21137..21754
                     /locus_tag="PXC99_000442"
     CDS             21137..21754
                     /locus_tag="PXC99_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL5416931.1"
                     /translation="MILVCGANGLLGRAICDKLPREKTIAVLRKDAMDTFFSERNIAV
                     EIADLLDLESCNALLQKTQPEILITVVGGKNEQGIRSDKTANINLIKAVEKYSPTTKV
                     VLVTSVGCAEQWDLISPLAQQALGEALKAKTEAEAYLQQTALNWLIIRPGGLNNDEVN
                     DEYQIVRDLPNERKMYVSRKSVATGIVRLLDSTENHQIFSIINRG"
     gene            complement(21838..22449)
                     /locus_tag="PXC99_000443"
     CDS             complement(21838..22449)
                     /locus_tag="PXC99_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentahemic C cytochrome"
                     /protein_id="HDL5416932.1"
                     /translation="MKSLSKIAFCFLAFIMPTFCFAGSNSYTTETIPLFADENLTQKI
                     GQLEAGAEIKLVQTTAKAAEIELNLWRKSKGFGRIWYHSFSKNITDAVFEKSFISNNP
                     LLEIVESKEDPNTGLVWQKVKMNVWVENAEFTQDLTNFWANTKNTYKTECSVCHKQRD
                     PKMHDANEWIAVFNGMVGFTDMDEATQKKVLRYLQMNAASSSQ"
     gene            22644..23552
                     /gene="glyQ"
                     /locus_tag="PXC99_000444"
     CDS             22644..23552
                     /gene="glyQ"
                     /locus_tag="PXC99_000444"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017806840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HDL5416933.1"
                     /translation="MSTKFNVKTFQGMILALQDYWASKGCTIVQPFDLEVGAGTSHPM
                     TCLRALGPEPMAFAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLDS
                     LKMLGFDPTQNDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPV
                     TGEITYGLERLAMYIQGVDSVYDLVWSDGELGKTTYGDVFHQNEVEQSTYNFEYADVD
                     FLFQCFEQYEKEAQYLLGLEKPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILR
                     IRALTKGVAEAYYASREALGFPGCKK"
     gene            23632..23892
                     /locus_tag="PXC99_000445"
     CDS             23632..23892
                     /locus_tag="PXC99_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416934.1"
                     /translation="MKPILYFADWCPDTAPFVAELDRLGIEYEPCDITKGGSTLKPFL
                     KLRDTHSAFDHAKANGYIGIPALLIEGEKVVLDLAELEGIFG"
     gene            23935..24969
                     /locus_tag="PXC99_000446"
     CDS             23935..24969
                     /locus_tag="PXC99_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL5416935.1"
                     /translation="MKTVIADNSAEFVNEISQLIQSSKQRMTVAVNAELTLLYWHIGK
                     RINDYILQGERAEYGQEVVKNLAQSLTEQFGKGWSKRHLNYTMQFATTFPNLEIVHAL
                     RAQLSWTHFKQIIHIDDPTKRGFYATMAAQERWSTRTLEDRIGSLLFERTAISKKPDE
                     TIIAELSLLREKGEYNQSMVLKDPYILDFLDLNDRYMERDLEDAILREIEQFLLELGA
                     GFTFVARQKRIQIDNDDFYIDLLFYNRKLKRLIAIELKTESFKHSHKSQMELYLAWLA
                     KYEQEADENPPLGMILCTGKKQEQVELLDLKNSDIHIAEYMTVLPSKAVLEQRLHLAV
                     ERAKERFLLK"
     gene            25347..25811
                     /locus_tag="PXC99_000447"
     CDS             25347..25811
                     /locus_tag="PXC99_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416936.1"
                     /translation="MSIKKLLSTTIDQLENIIQVSGESFEKITSDLAEKAKELNSEYN
                     IKCEKLGYAITLFEKNSEIEKRYISLLSDFDMDTSIKGFEKLSLLMNGKNDNARKEAE
                     EHFNELQNGLLEAQDYKKDLDIKIRKLARELYNENIAQLEIEEIKEHLYKNW"
     gene            25820..27886
                     /gene="glyS"
                     /locus_tag="PXC99_000448"
     CDS             25820..27886
                     /gene="glyS"
                     /locus_tag="PXC99_000448"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HDL5416937.1"
                     /translation="MTTQNFLAEIGTEELPPKALKKLATAFAENVENELNQAGLSFEK
                     VEWFAAPRRLAVKVLSLAESQPSKEVEKRGPAVSAAFDAEGKPTKAAEGWAKGCGITV
                     EQAERIATDKGEWLVHRAVIEGQPTKNLLVDIIAKSLANLPIPKTMRWGDKTEQFVRP
                     VHTVTLLFGAELIEGEILGVKSGRTIRGHRFLGEREFQIENADQYPQLLKDRGSVVAD
                     FNERKALILAKSQEKATALGGVADIEEDLLDEVTSLVEYPNVLTAKFEERFLAVPAEA
                     LVYTMKGDQKYFPIYSKDGKLLPHFIFVSNINPEDPSKIIEGNEKVVRPRLTDAEFFF
                     KTDLKQKLEDQLPRLETVLFQQQLGTLRDKTARIEALAGEIAKQIGADETKAKRAGLL
                     SKCDLMTNMVFEFTDTQGVMGMHYARHDGEDEEVAVALNEQYMPRFAGDNLPNSLVAC
                     SVALADKFDTLTGIFGIGQAPKGSADPFALRRAALGSLRIIVEKNLPLDLTDLVAKSA
                     QLFGDKLTNKDVVEDVVDFMLGRFRAWYESEGIAVDVIQAVLARRPTKPADFDARVRA
                     VSHFRTLDSAEALAAANKRVSNILAKADIAIGDIDVSACVEPAEKALAEAVIALKAEV
                     QPLIAQGDYTAVLDKLANLRQPVDAFFDGVMVNAEDQKLRQNRLAILSTLQGLFLQVA
                     DISLLQ"
     gene            complement(27991..29292)
                     /locus_tag="PXC99_000449"
     CDS             complement(27991..29292)
                     /locus_tag="PXC99_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine dehydratase subunit alpha family protein"
                     /protein_id="HDL5416938.1"
                     /translation="MNIHCEKLVQSILHAVNHEVVPALGCTEPISLALASAIARQYLG
                     HLPERIEAKVSPNLMKNGMGVAVPGTATVGLPMAAAIGAIGGEPDGGLEVLKNITPEQ
                     VKQAKAMLNTDKVSVSIFETEHILYSEATLFHQANRVCVRIAEHHTNVIYIEKNGQTI
                     LSKPCAVNNDNTTEIFASLSAKDIFNFSMQIELEKIRFIEQAAQLNSALSQEGLRADY
                     GLHIGRTLQKQIGLGLISDDLLNRIVIETTSASDARMGGASLPAMSNSGSGNQGITAT
                     MPIVVVARHLNVTDEQRIRALFLSHLMAIYIHSKLPKLSALCAVTTAAMGSCAGIAWL
                     LTGKFENISMAISSMIGDISGIICDGASNSCAMKVSTSVTSSYKSILMSMDNSQVTGN
                     EGIVEHDIDRSINNLCSIASRSMQYTDRQVIEIMVNKPKLK"
     gene            complement(29306..30583)
                     /locus_tag="PXC99_000450"
     CDS             complement(29306..30583)
                     /locus_tag="PXC99_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416939.1"
                     /translation="MDTQKLSPAEFKQATKFDSTDFGWIIMSIGMAIGAGIVFLPVQV
                     GLMGMWVFLLSSIIGYPAMYLFQRLFINTLAESPECKDYPTVISGYLGKNWGIFLGVL
                     YFIMLVIWMFVYSTAITNDSASYLLTFGITNTLLSDNPFYGLVLICILVALSSRGEKL
                     LFKISTFMVLTKLFVVAALGLAMIGMWQLHNIGAMPPFGKLIKDAIITLPFTLTSILF
                     LQTLSPMVISYRAKEQSREVARYKALRAMNIAFAILFITVFFYAVSFTLAMGREEALK
                     AYEQNVSALAIAAQFFPGSWATYVGVALNIFAVMTAFFGVYLGFREATQGIVMNLLLR
                     KFPAEKINPNYVQKGIMLFSILLAWSAIVLNAPVLSFTSICSPIFGLVGCLIPAYLVY
                     KVPALFKYKGLALNIIIITGILLCISPFLTFLE"
     gene            complement(30612..31280)
                     /locus_tag="PXC99_000451"
     CDS             complement(30612..31280)
                     /locus_tag="PXC99_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HDL5416940.1"
                     /translation="MPDKLEYLHDLDKEIMLSYFSLSEAIAGLLGEFCEVVIHSLNAY
                     EKSVIKIINGHHTNRKIGSPITDKGLQLLKCYQKDQSNTELVYFSRLNNGNLVKSTTH
                     IIIGHEGKPIGLFCINLNLSTPLDKTVSSFMNYDPIPPHYKSENFITHPKELIEETFL
                     KAVTHIEQHTTKHSKLYKKSIIFYLFENGIFELKEAVPIVAEKLSLTSHAIYKHLREF
                     KNNT"
     gene            31514..31804
                     /locus_tag="PXC99_000452"
     CDS             31514..31804
                     /locus_tag="PXC99_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5377 domain-containing protein"
                     /protein_id="HDL5416941.1"
                     /translation="MSVKTEVLFSNHWNVRVSDPGFEGSPSHYFETVYLTLEAFINGE
                     NVHYEFTRKVEQEVKTHRSFTDVNELFEFLGEYLSPVALGNVGVRIGQLGLA"
     gene            31871..32782
                     /gene="xerC"
                     /locus_tag="PXC99_000453"
     CDS             31871..32782
                     /gene="xerC"
                     /locus_tag="PXC99_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HDL5416942.1"
                     /translation="MTTSNPLFQQTRPYWDFLRIEKQVSPHTLSNYQRQLMAVSELFS
                     QAGIENWEEVESSSVRWMLSQSHKQGLSAKSIGLRLVALRQWFVYLIKIGRMSANPTL
                     GVKSPKVGKHLPKNIDAEQVGQLLAIESDEPSDIRDIAMMELMYSSGLRLSELQGLDL
                     GDMDLSAREVRVQGKGSKERIVPIGSQALKALNRWLEMRLQFKPQDNAVFLNKRGGRL
                     SHRSIQLAMKKWGERQGLESHLHPHKLRHSFATHMLEASGDLRAVQELLGHSSLSTTQ
                     IYTHLDFQHLAKIYDSAHPRARRKQED"
     gene            complement(32779..33150)
                     /locus_tag="PXC99_000454"
     CDS             complement(32779..33150)
                     /locus_tag="PXC99_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaN family protein"
                     /protein_id="HDL5416943.1"
                     /translation="MKYLYIICGFICIGLGIIGAVLPGLPTTPFLLLALFCFTKGSER
                     IRQWFIQTKLYKKYLQEYDEKRAMTMKQKITILAISFPFTLFAFFALPHIGGKIALVV
                     LVIIQYWYFFCKMKTLEPENA"
     gene            complement(33306..33395)
                     /locus_tag="PXC99_000455"
     tRNA            complement(33306..33395)
                     /locus_tag="PXC99_000455"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(33359..33361),aa:Ser,seq:tga)
     gene            complement(33487..34578)
                     /gene="trmA"
                     /locus_tag="PXC99_000456"
     CDS             complement(33487..34578)
                     /gene="trmA"
                     /locus_tag="PXC99_000456"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HDL5416944.1"
                     /translation="MTLPIEQYSDLLAKKTENLTALLKPFNPPAIEVFASKPSHFRMR
                     AEFRVWHEEGELYHIMFNPETKARYRVDSFPIASELINHMMTALLAEIKGNELLTRKL
                     FQIDYLSTLSGEIAVSMLYHKSLNEEWVEQANALKSRLEQQGFKVQIIGRANKQKIAL
                     DCDYVEEILPVHGKNYVYRQVENSFTQPNAEMNIKMLEWARNCTKNSEGDLLELYCGN
                     GNFSIALAENFRKVLATEISKSSVQSAQYNIEKNGIVNLQIIRMSAEEFTQAMNGVRA
                     FYRLKGIDLNAYECNTIFVDPPRAGLDQATLNMVQAYERILYISCNPETLAENLQQLS
                     QTHRIEKAALFDQFPYTHHIESGVWLIRK"
     gene            complement(34643..34975)
                     /locus_tag="PXC99_000457"
     CDS             complement(34643..34975)
                     /locus_tag="PXC99_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF413 domain-containing protein"
                     /protein_id="HDL5416945.1"
                     /translation="MADSFSVTRRFFDDKNYPRGFSRHGDYTIRESQTLEQFGQACLA
                     LESGERKPATQEEKRFVAVMKGEEVAETDIEKAWLKYRTLTSKTKRIYTLSGNAGSDA
                     GDDFSAAE"
BASE COUNT        10428 a         6903 c         7693 g        10101 t
ORIGIN      
        1 ttttcttttg ggttgttttt ttgagataga ggaatcaaga ggattgagaa actacatctc
       61 aatttgatgt gtttgtatga cataaaacaa actttatgaa aagaagactt tttttaagaa
      121 agtaactgcg ttaaagtggt aatccttata atgaaaacac agggactttt tatgaaaaaa
      181 acacttttga cccttttatt cgggtgtgtg gttactgcgc aggcacaaga tatcaaattt
      241 gtgatggagc caagctatcc tccatttgaa atgaccgaag agaagggaga aattatcggt
      301 tttgatgtgg atattgcaaa tgctatctgt aaagagatga atgcaaattg tacattccat
      361 agccaacctt ttgatagctt aatccaaagc ctaaaacaaa aacaatttga tgctgcaatt
      421 tcaggtatgg gtattacgga accacgtaag aaacaagtat tatttagcga gccttacttt
      481 ccaagctctg ctgccttcat tgcgaaaaaa gatacagatt ttgctaaggt gaaaacgatt
      541 ggtgtgcaaa atgggactac ttaccaacac tatttagcaa aagagaaaaa agagtacaat
      601 gtgaaatctt atgcctctta tcaaaatgct attttagatg tgcaaaatgg gcgaattgat
      661 gctatttttg gcgatgtgcc ggtattggct gagatggcaa gaaaacacga agggctagat
      721 tttgtagggg agaaaatcaa taatccaaac tattttggtg atggtttagg cattgcaact
      781 cacttgaaaa accaagtatt agttgatcaa ttcaatgcag cattaaaaac gattaaagag
      841 aatggcgaat atcaaaaaat ctatgataaa tggatgggcg gcaagtaact tgtaagcggt
      901 cattttttgc aaagttttgc aaagttttgc agattttgac cgcttgtatt ctttgattta
      961 cccatttaag ccagtataag ttttaagcat aagctccatg gtctgcttta aattagctag
     1021 catttcataa cgcttgcgat acattgagcg ttttttgctt ggaatttcat ctattttttt
     1081 actttccaat tcaaggggta actgccaata atttcccggc tttccgcccg attccgcaaa
     1141 aatagcatca taatccacta catagcgctt actttgcacc cagcgggatt tattctggta
     1201 tttctgtgga atgcctagta aactctgata gccaagaaca gccgttaaag ccttcatcgt
     1261 ttcaaccatt aaataggccg ggcgtaagcc gtggcaactt ttggttaatt gtttcaccag
     1321 ctcttttgaa ccttcaaaat tcggaccttg aattacggct atcaacaagg cttcatctaa
     1381 cttaccaaat gttaataaat aaactagctg attagtcggt ctgtggcgaa gttctaatgc
     1441 ccaaaaacct tccatcggct gatgttcatt gatgttaagc cataactcaa aatctgcaat
     1501 aatttcacca aaattgaccg cttgttccca tagaggtggt aaatgagcca atttttgcgg
     1561 taaaaacagc aggttatctg tgattttttg taagcgttgt tttgcactga aacgcttatc
     1621 taaaaagcgg tgagccacgg ggtagctgta atttggtcga gcatttaaga gcggaatcag
     1681 ttgtggattt tgtgtaacga actgctcaaa ttgcttgatt ttggaatgat gcaaccaaga
     1741 gcgaagacgg taacgaaaac gtttccctgc gtaagacttc tttccctgat ttggataaag
     1801 cgattgtgca gcaggccatt tgtatagatt tttcattttt acaactaaca atatgaaaag
     1861 cggctaattc gcaagatttt tcgctaaaat aaccgcttgt ataacttaaa actacaaaat
     1921 aaagcgactt aaatcttcgt tttccaccac gtcatttaac gcttcggaaa catagttttc
     1981 atcaatgatg attttttcac cacggcgttc gctggcatcg aacgaaatgc cgtccatcaa
     2041 acgctcaagc acggtgtgta aacgtcttgc cccgatgttt tcggttttct cgttcacacg
     2101 gaatgcactt tctgcaatac ggctgatacc gtctttagtg aactcaatct ccacgccttc
     2161 agttttcatc aactcacgat attgcaaggt taatgaggca ttcggttcgg ttaaaatacg
     2221 ctcaaaatct tctttggtaa gcgattttaa ctccacacga atcggcaagc gaccctgtaa
     2281 ttctgggagt aaatcagacg ggcgagccac ttggaatgcc cccgagcaga taaacagaat
     2341 atggtcggtt ttcaccatac catgcttggt atttaccgtt gagccttcaa tgattggaag
     2401 taaatcacgc tgaacacctt cacgagaaac atctccaccc gaatgctcgc cttttttaca
     2461 gattttgtcg atctcatcaa taaagacaat accgtgctgt tccaccgctt caatcgcttg
     2521 ctgtttcagc tcttcaggat ttactaattt cgccgcttct tcatcaagca tcacctttaa
     2581 cgcatctttg attttcattt tgcgtttttt ggttttgctt ggcgacattc cctcaaacag
     2641 cgattgtaat tgcgaggtca tctcttccat tcccggcggg gtcataatct caacgctcac
     2701 ttgagctgcc acgtcaattt caatctcttt atcgtctaat tgcccttcac gcaatttttt
     2761 gcggaaagtt tggcgggtag aattattgtc ggattcctgc acatttcccc actgatcttt
     2821 cgccggtggc aataatacgt ctaaaatgcg atcttccgct gcatcttgtg cacgcatttt
     2881 atttttttcg accgcttgtt ggcggactaa tttcatcgac acatcagcta gatcacggat
     2941 aatcgaatcc acttctttac ccacataccc cacttcagtg aatttggttg cctcaacttt
     3001 gataaaaggg gcattggcaa gcttcgccaa acggcgggcg atttcggttt tacccacacc
     3061 ggtcggaccg atcattaaaa tatttttggg ggtcacttct tggcggagat cttccggcaa
     3121 ctgcattctt ctccagcggt tacgcaaagc aattgctacc gcacgttttg catctttttg
     3181 tccgataatg tgtgcgtcta attctgagac gatttcacgg ggtgtcattg acataatgtt
     3241 attccttaaa ttaattaccc tctccccttg tgggagaggg acagattttt ctttgttcag
     3301 aagaaaaatc agggagaggg taacaagcgg tcttttttct taaacgtttt gcattaaccc
     3361 ctctctctga aaaatatttc tgaacgaaat atttttcggt ctcaatactc gctacgctcg
     3421 ctcctgtgga gccgttggca aagccaacgt tcaaatgtaa acatttgtcc cacaagggga
     3481 gagagttatt taactaaact tcttcaatca cgtgattgta gttactgtaa atatcaatat
     3541 cgccggcgat ttttaacgct tccgcaacga tttcttttgc agataaatta ttttcggtgc
     3601 gtaataacgc aagagcagcg gctttcgcat agttaccgcc tgaaccaatc gccagcacat
     3661 cttgctccgg ctcaatcaca tcgcccgaac ctgaaaccaa taaaaactcg ctgtcattgg
     3721 cgacaatcat catcgcttct aaacggcgta aagcacgctc ggtacgccac tcttttgcca
     3781 gttccactgc cgatttcact aaatgccctt ggtgtaactc caattttttc tcgaataaat
     3841 cacgcaaaat aaaggcatca gcggtcgagc cggcaaagcc tgtcaccact ttgtctttat
     3901 acaaacggcg aactttccgc accgtgcctt tctcgataca atttccaagc gttgcctgac
     3961 catcaccacc gatagccact tttccgtctt tacgcacgca tacaatcgtt gtcatactaa
     4021 atccttcttt ttaaaaactt tggcttatat ggggatatgc tgtgtgtttt caagcttaaa
     4081 actcacattt ctttgttaag gttgccgcaa taggttgccc gttttccaat gaaattgcca
     4141 ttttatagga gagaacctgc actttttgtg caatggcttg agcgaataat tcggcatatt
     4201 tggggtctat ctgctttgcc acttcaaacc gttcaatacc tgtgtgcaaa atagcgaaaa
     4261 aaatgaccgc ttgtaagccc tgttcagcga ttttcgtcag ctcccgcaaa tgtttttgcc
     4321 cccgctcggt tttggcatcg gggaacattc ccacaccgtt ttcggttaaa agggtggtag
     4381 atttcacttc cacaaaacaa tccggcagaa ggtccgattt gagcaaaaaa tcaatccgac
     4441 tgttttcact gccatatttt tgttcaggca gaatgtgctg ataatccgca agctcgctaa
     4501 tccattgatt ttccaaggct tcttgtacaa gctgattggc tctcaaggta ttgacacaaa
     4561 taaaatcccc cgcttgggtt tgggttagtt cccaagtgtg agcatattta cgtttggggt
     4621 tatgagaggt ggaaaaccaa actgtatcac cggggttggc acagcctgtc atcgcaccgg
     4681 tatttgggca atggagggta atttgttcgc catttggcaa ctgaatatcg gcaagaaaac
     4741 gtttataacg gcgaagtaaa atgccgtggg aaagaggggg aaatttcatt tgcaaaaaat
     4801 cctgttaaat taaccgcttg tatcttttca tcatcggtag caaaacggag agtaaggcgg
     4861 tgcaaataac aataataatc ccaacccaag tcactaaact gagctgttct gataaaaaga
     4921 ccaatgccat tagcagtccg aataccggtt caagtgcgag tagaatacct gcaagaatag
     4981 gcgaagattg gctgatgcct ttgttccata acaatattgc caagctggta caaataatgc
     5041 ctaaatatgc tacgctcgcc catgctgaga gactggttgg cagttgccaa ttttctgcaa
     5101 agagtaaggt aataggtaag gcggtaattg ccccttgcac cagcatgatc ttggttaaat
     5161 cgatcacttt tactgattgc agaatctctt tgctgaggta cattcccaca ataaaactta
     5221 aactgcctaa ggttacaagc aataatccta atacattgat tgaaccgcta tcatcgctac
     5281 ccgatgccat aattaaaatc cccaagcagg caaataaact taggataaaa tcgagcctgg
     5341 ttgcctgttt tttgaaacaa aaatagccga ctaacacagt taaaagcggg tttagcccga
     5401 gtagtgccac ggcacttgct gcggaagtta atttcaagcc ggaaaattgt aagatcacgt
     5461 acagaggaaa agtgagaaaa ctaatcagcc agactttaat gtgctgattt ttctggattt
     5521 ttttatacgc aggaataaaa aacggcagag cgataaacgc cgctaacgtc agccgaattt
     5581 gcataatttg gacagggtca aaggctgaaa tcgccacttt acctacaatg aatgaactcg
     5641 cccaaatcag ggttgcaatc agtaaatata acatttagac ctcgtaaaac tctaacggca
     5701 gatcgtccgg atctcggaaa aacgtgaagc gtttgccggt gatctcatca attcggatcc
     5761 cttcatgcgg taattgatgt tgttctaaaa atgcgatggc atattcaata ttttccactc
     5821 gaaatgccaa atggcgaagc ccgcaggttt cgggcgaggt gaaacgaggc ggcgtttcag
     5881 gaaaactgaa taattcaatt tgtgagccat ctttaaagcg taaatctaat ttatagctgg
     5941 cacgttgctc tcggtaggtt tctgcgatga tctctgcccc taaaatgcgg gtgtagaaat
     6001 gtttggattt ttcgtaatcg gaaacaatta atgcaatgtg gtggaaacct aaaatgggcg
     6061 atttcatctt ttttccttaa tgtgtaaaat ttttggtaaa actgaccgct tgcagtatga
     6121 taatttattt ttcggatttc aagattttta atgaacagca attccccatt tcctttagcg
     6181 aaagcaaaag cttctgatcc gtttgccaaa gctgttttag cttggtttga gcaatatggg
     6241 cggaaacatt taccttggca gcaaaataaa acgctgtatc aggtttggtt gtcggaggta
     6301 atgttgcaac aaactcaagt agcgaccgtt attccttatt ttgcacgttt tatggaacga
     6361 tttcccaccg taattgactt agctaatgcc tcgattgatg aagtattgca tttgtggaca
     6421 gggctgggtt attacgctcg ggcaagaaat ttgcataaag cggcaattca aattcgagat
     6481 gagtttggcg gtgaatttcc tacccgattt gatgatgtgt tggcattaac cggagtgggc
     6541 agaagtactg caggggcgat tttgtcttct gtgttagatg ccccacaccc gattttagat
     6601 ggcaatgtca aacgggtgtt aagccgctat tttgcagtag aaggctgggc gggtgaaaaa
     6661 gcggtggaaa atcgcctttg gcaattaagc gaaagtgtga cgcctgatac ccaagtggca
     6721 gactttaacc aagcgatgat ggatttaggg gcgatgattt gcacccgtac aaagcctaag
     6781 tgcttgctct gcccgctaca agaaaattgt aaaacgaatg caatgcaagc gtgggatagc
     6841 tttcctgcca agaaaccgaa aaaaaccttg ccggagcgtc aaacctattt tttagtgctg
     6901 aaaagcggct cgaaagtgct gttacaaaaa cgggaagcaa aaggcatttg ggggggctta
     6961 tttgtgtttc cgcaatttga gagcttagag gctctcaagc ggtctgattt tatgcaaaat
     7021 ttgcaaattt cacagcaatt aactgcattt aggcatactt ttagccattt tcatttggat
     7081 attaccccgg ttttagtaga aaccgatttg aaaaaaacaa gtgaaaattc accgcttgtt
     7141 gtcgaagaaa aagcaggaaa ttatctttct aaggtatctt caaatgcgga ttattggtat
     7201 gatttgcacc aacataacga agtgggttta gcaacgccgg ttaaacgtat tttagatgag
     7261 ctggcattca gtgtgaaaaa tgagattaag gattaaatta tggctcgtac cgtattttgc
     7321 gaatatttaa aacaagaggc agaaggttta gattttcaac tttatccggg ggagctgggt
     7381 aagcgtattt ttgactcaat cagcaagcaa gcgtggtctg agtggattaa aaaacagaca
     7441 atgatcgtca atgagaaaaa actcagtatg atgaaccccg aacaccgtaa actgctcgaa
     7501 caagagatgg tcaatttttt atttgaaggt aaagagatca tcatcgaagg ctataagccg
     7561 gtcgaataat aaaggttaaa tcacaatgaa aaaatatgct aaatatttgc cgatgttggc
     7621 aattattccg tttcttattg cttgtgggag caataaatcg actaagaagc caaaatctac
     7681 ccgagtagat tattctaaag ataccaatgg tttggatatt ttggcagggc agttttctca
     7741 caatattgat gatatttggg gaagtaacga gctgttagtt gccagtaaga aagattatgt
     7801 gaaatatacg gataagtttt acacccgtag ccatatttcg tttgaagaag gggtgattac
     7861 gattgagact ttagggaatc agaatcatct acgcaattcg attattcata ctttattaat
     7921 gggcagagac ccgaaaggga ttgatttatt tgcctcaggc gatgcaccga ttagctctaa
     7981 ccctttccta aacggacagg ttgaagatca attcgggcga aatattacca atgttgccat
     8041 cgccaatgat tttgcgactt atttgttgca aaataaggtg caaacacgcc gtttgaaaaa
     8101 tggtcaaact gtgagctttg taacgattaa aatggtggca ggacacattg aagtacgtgc
     8161 cagacaatat ttaccgctgg tgcgtaaaat ggcgaagcag tatggtattg agccaagttt
     8221 gattttaggg attatggaag tcgaatcagc attcaaccct tatgccatca gctatgccaa
     8281 tgcgattggc ttaatgcagg ttgtacctcg taccgccggg cgtgatattt ttgcccgtaa
     8341 aggtatggga gggcagccaa gtcgtgaata tctttataat ccatcaaata acattgatgc
     8401 aggtacgctt tatttgacta ttttgcgtga tgaatactta gatggaattg aagatcctgt
     8461 ggctaaacgc tatgcaatga tttctgcata caatagcgga gcaggtgcgg tattacgagt
     8521 gtttgattca gaccgatact ctgcgattga tagaattaac gatctttcgt ctgatgcggt
     8581 ttatcgaatt ttaaccactg ctcatccatc ttctcaagct agaaattatt taagaaaagt
     8641 aaccaccgcc agagagaaat atcgcaatat tcgttaatgt gtgaattatg ctgtttttta
     8701 gccgaaaagt ataaaaaaag cacatttgag cagcggtttt tttaaatttg caaaaaaacg
     8761 tttgacgttg caagctgaaa tcagcataat gcaccacgca acgacgttgc ctcgatagct
     8821 cagtcggtag agcaggggat tgaaaatccc cgtgtcggtg gttcgattcc gcctcgaggc
     8881 accatcaatt cctccttagt tcagtcggta gaacggtgga ctgttaatcc atatgtcgca
     8941 ggttcgagtc ccgcaggagg agccatattc tgaagccctg atgagtaatc atcagggttt
     9001 tctttttgag ctttccggct aactactaag aaattgctca atttttagta ttatgcgttc
     9061 aaaaacgcta aatttttgag aattgtattt gacgaagccc gaaaaaatca gcataatgca
     9121 ccacgcaacg acgttgcctc gatagctcag tcggtagagc aggggattga aaatccccgt
     9181 gtcggtggtt cgattccgcc tcgaggcacc atcaattcct ccttagttca gtcggtagaa
     9241 cggtggactg ttaatccata tgtcgcaggt tcgagtcccg caggaggagc catattccga
     9301 agccctgatg agcaatcatc agggttttct tttcgctctt attttttcaa acaataatat
     9361 cccctttaat tttgtaattt acctctcatt tctaacataa atttgaaaat atcacttcac
     9421 ttttatacgc aattcggagt attatgatcg cacaatataa ctaaataatg attcctcgaa
     9481 tatcgtcaaa ttttacggca tagtttaatc gctatgccgt ttttttattt ccctataacc
     9541 gtaacgcttt tttttgtata atggcggcaa ctttccgctc acaagcggta cttttttcct
     9601 aaaattttgc aaattgagaa agctgatatg tttgaaaacc tctctgacag actgtctaaa
     9661 acgctgcgta acattacggg caaaggtcgc ctaacggaag ataatattaa agataccctg
     9721 cgtgaagttc gtatggcatt gttggaggcg gatgttgccc tccctgttgt gcgtgatttc
     9781 atcaacaagg tcaaagagcg tgcgttaggg gttgaggtaa acaaaagcct cacgccgggg
     9841 caagagttct taaaaatcgt acaaagcgaa ttagaaacgg caatgggaga agccaacgag
     9901 gagctgaatc ttgcggccca accgcctgcg gtaattttaa tggcaggttt gcaaggtgcg
     9961 ggtaaaacca cctctgtcgg caaattggca aaattcctga aagaacgcca caagaaaaag
    10021 gtgttggtag tttctgccga tgtttaccgc cctgccgcta tcaagcagct acagaccctt
    10081 gctgaagcgt taaaagtgga cttcttcccg accgaaacca gccaaaaacc ggtagcgatt
    10141 gcagaagcgg cattgaagca cgctaagctt aatttctttg atgtattgat tgtggatact
    10201 gccggtcgtt tacacgttga tggcgaaatg atggaagaga tccaacaaat ccacgctgtg
    10261 ctgaatccga ttgaaacgct atttacggtt gatgcgatga ccggtcaaga cgccgccaac
    10321 accgcaaaag cctttaacga agcgttgccg cttaccggtg ttattcttac caaagtcgat
    10381 ggcgatgccc gaggcggtgc ggcactttct attcgccaaa tcaccggtaa accgattaaa
    10441 ttcttaggtg tgggtgaaaa aactgatgcc cttgagccgt tccaccctga ccgtgtggct
    10501 tcccgcattt taggtatggg cgatgtaatg tctttaattg aagatattca acgctcggtt
    10561 gatcaagaaa aagcggaaaa aattgccgcc aaattcaaaa aaggcgatga atttaccttg
    10621 gaagatttcc gtgagcagct tatcgaaatg aaaaaaatgg gtggaatgat gtcgatgctc
    10681 gataaactac cgggggcgaa aaacctgcct gaccacgtta aaagtcaggt tgatgataaa
    10741 atgttcatga aaatggaagc catcatcaat tctatgacct taaaagagcg ggcaaatccg
    10801 gatattatta aaggctcacg ccgccgccgt atcgcacttg gctccggcac acaggtgcaa
    10861 gatgtaaata agctgctcaa gcagtttgat gatatgcaac gtatgatgaa aaaaatgcgt
    10921 aaaggcggaa tggcaaaaat gatgcgtggt gttaaaggta tgatgggtgg tggtctaggc
    10981 ggtctcggtg gcttaggcag tatgtttggt aaacgttaat attcctattt tattagtacc
    11041 agccgaaaat cagttaacaa tccgttgcta ggattgttaa ctttccctat taatatctta
    11101 tttgcaaaaa taatactttt tgattgcttg tcgttctcag aaaaaattgg taagaagatt
    11161 atcctaaatc taatttaata cttagccctt tcagtgcgtc tcgtacattc tcaaataatc
    11221 ctttatcaca aataatctgg tcaaatacag taagagggca aacaaaaaaa gttgcgactt
    11281 ttccatattt tgaagagtct gtcactaaaa tgttttgctt ggatgcctct aaaattgctt
    11341 ttttaacggg gattttattt tcgttcggcg ttgttagacc ttttaaattc caggatgaag
    11401 tagatataaa tgccatatcg attgataggt ttttcagaaa ttctgctgca agtgaaccag
    11461 ttgtcgatag gttttcttta cagacacttc ctcctatatg aattaaatca cattttcctg
    11521 aattactaag atagtgagca ataacaaaat cgtttgttac aactagtaag tcatttctat
    11581 cgattatccg atgagctatt tctaatgtag tagttccagc atcaagataa atagttgtgt
    11641 ttgagggaat tagctgtgat gctaaagatc ctatagctga tttctgctct tggaataaca
    11701 ttgatttatc atcgtgtggt aattccatga ttaatcgttc aagagattga actccaccag
    11761 atactaggga taccttacct tgctcttcca gcttttgaat atcacggcga attgtcatat
    11821 gtgatacttt tagctgttct gccagaaaat taatacttgc gacaccatta ttattaataa
    11881 gtcgtagtat ttctcgttgt ctctctaagg ggatcatttt ttaacctatt ttaattgtta
    11941 aaagagatta tatcagattt agtttccaaa attaaaatca caaaaattca catttattgt
    12001 taatatttgt gatcttcatc acagatttta tcttttctat tggttaatat accgccatca
    12061 agttcattaa tttatttgag ggaataaaca atgagtcaaa aatatagcgt agccgtcatc
    12121 ggcttaggag caatgggtat gggagcagca aaatcttgta tcgctgccgg attagacaca
    12181 tacggtgtgg atcttaaccc gaattatctg gaaaccttaa aagcagcagg tgctaagaaa
    12241 gtcggcacaa gtgcggtcga ttttgccgct gaattagatg cggtgttgtt gttggtggtt
    12301 aatgccaacc aagtgaatgc ggtgttattc ggtgaaaacg gcttagccca acatttgaaa
    12361 caaggtacgg tggtgatggt atcttccacc atttctgcac aagatgcaaa aaatatttca
    12421 cagaagttaa cagatttagg cttggtgatg ttagatgctc cggtttcggg tggggcagca
    12481 aaagcagcac aaggtgaaat gactgtgatg gcatcaggtt ccagcgaggc attcgagaaa
    12541 ttaaaaccgg tattagatgc ggttgcaggc aaagtgtata acattggcga agaagtcggc
    12601 ttgggtgcaa cggtaaaaat tatccatcaa ttacttgccg gtgtgcatat tgccgcaggt
    12661 gcagaagcaa tggcattggc ggctcgtgcc ggtattccgc ttgatttaat gtatgacgtt
    12721 gtaaccaatg cggcaggcaa ttcttggatg tttgaaaacc gaatgaaaca cgttgttgag
    12781 ggcgattaca ccccactctc tatggtggat atttttgtga aagatttggg attggtgaac
    12841 gacaccgcaa aatctttgcg tttcccgctt cacttagcca gcaccgctta ttctatgttt
    12901 accgaagcca gcaacgcagg ttacggcaag gaagatgata gtgcggtcat taaaattttc
    12961 agtggtatcg aattacctaa aaaagagggg aaataagatg ttaggcatta ttgcagacga
    13021 tttcaccggt gcgagtgaca tcgccagttt cttaaccgaa aacgggctaa aaacggtgca
    13081 aatgaatggt gtgccgaaaa ctacacttaa cagtcaagtt gatgcgattg tgattagcct
    13141 gaaatctcgc tctaaccctg tggaagaagc aatccaacaa tcattacaag ccttagattg
    13201 gctgaaacaa aatggttgct cgcaattcta ctttaaatat tgttccactt ttgacagcac
    13261 ggagaaaggc aatatcgggc cggtaaccga tgccctaatg gcggcattag ataccgattt
    13321 taccgtagtc acaccggctc tgcctgtcaa tggcagaacc attttcaacg gctatttgtt
    13381 tgtgggcgat gtgctactga atgaatctgg tatgcgtaac cacccgatta ccccgatgaa
    13441 agatgccaac ttggtgcgtt taatggatgc acaatctcaa ggcaaaaccg gcttggttgc
    13501 ctatgctgat gtgattcaag gggcagagcg tgtgaaagcc cgttttgctg aattgaaaca
    13561 gcaaggctac aaatatgcgg tagtagatgc tgccgataat tcacaacttg cggtgcttgc
    13621 cgaagcggtt gccgattttc aattagtcac aggcggttca ggcttagggg cttatatggc
    13681 ggcttaccgt tcaggcggca aaaaaggcac gaatgcgttt gtaccaagca aaggcaaaac
    13741 cgttgtgctt tcgggttctt gctcggtaat gaccaatacc caagtggcgg cttaccagca
    13801 aaaagcccca agttatttct tagaagcgga aaaagccatt caggatccga actatgtaga
    13861 aacgctttat caatgggtga ttgcaaacct agacggtgac tttgccccaa tggtttatgc
    13921 caccgttccc cctgaaaaat tgaaagagat tcaaacccaa ttcggcggcg ataaagccag
    13981 ccacgccatt gaaaatacct ttgccaaatt agccgaaaaa ttacaagccg caggcgtaac
    14041 taactttatt accgcaggcg gtgaaacttc gagcattgtg gttcagcaac ttggattcag
    14101 cggtttccac atcggcaaac aaattgcacc gggcgtgccg tggttacaag cggtcgaaaa
    14161 accgattttt cttgcattga aatcgggtaa cttcggtaaa gaagatttct tcagttttgc
    14221 tcaggagatg tttgtatgac agaacaagaa caaaagattg aaatggtcaa tcttgcccgc
    14281 tcgctgtttg agcggggcta taccgttggc ggtgcgggca acctctccgt gcgtttagat
    14341 gaaaatcgca ttttagttac cccaaccggc tcttcgctcg ggcgtttaga ggcagaccgc
    14401 ctttccgtat tggatatgca gggtaatgtt ctttcaggag ataaaccttc aaaagaatcg
    14461 gtattccact tggcgatgta tcagaaaaat ccggcttgcc aagcaatagt gcatctgcat
    14521 tccacttatt taaccgcact ttcttgcttg gaaaatttgg ataccgacaa cgctatgcgt
    14581 gctttcaccc cttactatgt gatgcgggta ggaaaattgc cggtcattcc ttactaccgt
    14641 ccgggcgaca tcaacattgc ccgagagctg ggggaacgag ccttagacgg caaagccttt
    14701 ttactggcaa atcacggggt ggtagtcaca ggttcagact tgcgtgatgc ggtggataac
    14761 acagaagagt tggaagaaac ctccaagctc tattttattc tacaaggtca aaaagtccgt
    14821 tatctcaccg atgacgaagt caatgatctg aaaaacagag gaaaataaaa tgcctaaatt
    14881 tgcagcaaac cttacgatga tgtttaacga agtgccgttt ttagatcgtt ttgaagcggc
    14941 tgccaacgct ggatttaaat atgtcgagta tttatggcct tatgattatc cggcagcaga
    15001 attgaaagcc aaacttgagc aatatggctt aaaacaggtg ttgttcaata ccgcagccgg
    15061 agatgttgct caaggtgaat ggggtgtttc tgccattccg gggcgtgaag ctgatagcca
    15121 tcgtgatatt gatttagcgt tggaatatgc cctcgcctta ggttgtgaga atgttcacgt
    15181 tatggcagcg gtcgtgccag aaggcgaaga tcgtgaagcc tataaacaaa cctttatcaa
    15241 aaacgtgcaa tatgccgccg ataaattcaa accgcacggc attaacgtct tgcttgaagc
    15301 cctaagccct gaagtgaaac cgaattatct gcttaaaagc cagtttgata cgctagaaat
    15361 tgtggaagcg gtaaaccgag acaatgtgtt tgtacagctt gactacttcc acgcacagaa
    15421 tgtggacggc aacttatctc gcctaaccga caaactcaag ggtaaatttg cccacattca
    15481 aattgcccct gtgccagatc gccacgaacc ggacgaaggg gaaattaact accaatatat
    15541 cttcaacaaa ctcgatgaaa tcgggtatga aggctatgta ggttgcgagt ataaaccacg
    15601 agcggaaacc acctcaggac taggttggtt tgagcagtat aaataaccac gatgattagc
    15661 ggataaatac gtgaatacaa catttagaag gaaactttat gtcaaatgaa atgttaattt
    15721 tgattggatt agcaagcgta gttgctcttc tggtcattat gattaaaggt aaagtacacc
    15781 cattcttagc attggggtta gtgagtatcg cagttgcctt aactgcaggt attccaatga
    15841 gtaaagtgat cccaaccttg atttcaggta tgggaagtac tttaggtagc gttgcactca
    15901 tagtaggttt gggagcaatg ttagggaaaa tcattgaaaa atctcacggt gcggatgtat
    15961 tagcaaattg gttgttacag cgttttggtg agaaaaacgc tccctttgca ttaggtatga
    16021 caggttttat attcggtatt cctgttttcg ttgatgttgg ttttatcgta ttgctcccga
    16081 ttatttttag tgtagcgaga cgtttagggg gaaatatcct tgtttattct ttgccaatcg
    16141 ggcttgcgat gttacttgtt cacgttttag ttccacctca tccaggtatt gtagcgggtg
    16201 ctcaaaactt aaacgcagat attggctttg tattgggaat tggcttagta gcagcgctac
    16261 ctgcatattt aatcggtcaa aaatttattc cgttctttac aaaaaataat ttcgtaaaag
    16321 tagtaacttc aaccgatctt ttacagcacc aaaaagattt gattaaagag aaaggcattg
    16381 aactaccttc ttttggtaaa gtgttagcaa tgatttcttt cccgctaatc ctgattatgt
    16441 taggtacagt aacggcaaca accttgccga aagaacatat cgtgcgtgaa gtattcagta
    16501 tggtaggaag ctctccgttt gccttatttg tggctgtttg tctttctgct tatgtattag
    16561 gttttagata cggttggact aagcataaat tagaagaagt actggagtct gcgttagcac
    16621 cgattgcggg gattatttta atcaccggtg caggcggtat gttcggtaaa gtgttagatg
    16681 ccagtggcgt aggtaaagca ttagcagatg tattagccaa cacgggctta ccgttattgg
    16741 ttctttcttt catactttct gcattattgc gtgcagcaca aggttctgca acggtggcaa
    16801 ctattactac tacaactatt ctagctcctg cagctgtagc agcaggttat aatgatctgc
    16861 aattagcact tcttactgca gctattggtg caggttctat gacattatcc cacgtgaatg
    16921 attcactctt ctgggtatgg acgaaattct tcaatgttcc tgtatccgta ggcttaagaa
    16981 cttggacgtt tttaacgact attttcggtg taatagcctt tgccgttgtt ggcattattt
    17041 ggatgttatt cgtttaatat cactctgtta ctgcttaaaa tccacctctt atgaggtgga
    17101 tttttttagg agaaacctat gctgaaaaaa acacttttat ttacgctatt actttctcac
    17161 tccctctatg cagaggatat gattcaggaa aataaatcag cgaatattac gttgcttgcc
    17221 gaaatcaccg ctcaaggtca aaaaattaac ggcgtggcat tggaatatcc tgataatgtc
    17281 ttatcaggca gcgatcttcg ccaactgtat caggtcaaaa cggcattaga tagtgcggag
    17341 aaagaaaacc gttcggtgct caaagcctat gtcaataatg agccaaaagt gaccgcactt
    17401 ccgcaagccg gtaaatttgt gattattgaa ttggatacgg cagataaaaa tgcggcaact
    17461 tatagcgtaa aagatgctaa taaagcgccg atgaaattta aatccaaaga tgaaaacggc
    17521 aacattgtag aaacagagaa agtacaagcg gtcaaaattc cagagttttt tgcaaatcgc
    17581 ctaatctatt cggcggaaca aaaaggcttg cttaaattaa ccagcggcac aactctaggc
    17641 aagactgaat ggacacaaac cgctgaaccc gacaaaatca aaacccctta tctcgatgat
    17701 tttgtcgcaa aacaagtgag cttagaccag tctggaaata aactgaacta ccgtctctat
    17761 tcgcctttgc aaaaaaatgg tgaaaaatac ccgcttgtga ttttcctaca cggttcaggg
    17821 caagtcggtt cggataacct tgctcacctg ctttccagta aaggggcgat tgccaccctg
    17881 ccttatgccc caagttttgt acttgctccg caatacgacc aagtattcga cccatttgat
    17941 aatgccgcca aagggcaaaa aggcggtatt cactggcaaa cggaaaatcg tatcaatctc
    18001 gtgttaaaaa tgattgatga aaccctaaaa gccaatcctc aaattgatac cacacgcatt
    18061 tatatcaatg gcttatctcg aggtgctgaa gggggcttaa atctgttgtt ggctcgcccg
    18121 aatttctttg ccggagcatt attaatgagc ggtcgtgaag cctacaccaa cgaatgggtg
    18181 gacggcaatg ccaccaaaac gaatttggcg gcaattaaac atataccgat ttggtttttc
    18241 catagtaaag aggacaaagt ctcgccggta aaaggttctc gcattaacta ccgcattctc
    18301 aaagatgagt taaatgcccc caatgtgaaa tataccgaat tcacttttga acaagccggc
    18361 gacaacggca ttgtcaataa taaccctcat aatacttggg acgctgtgta taacagccct
    18421 gaggtgattg ggtggttact tcagcaaaaa cgccactaag gaggctcact gtgtttatgt
    18481 atttgtctca cccgttagat cctaaagatt tagcttggcc gggagaacct gttgttgagg
    18541 tgactcgctg cacagacgta ggtgaagaaa cgccatttag cagttttatc acgaaactac
    18601 cgaatcattg cggcacacat atggacgctc ctcgccactt tgtgaaagac ggtttaagta
    18661 tcaatgaatt gccgatagag tatttctgcc ataaagaggt cgctttaatt gaaattccca
    18721 aaggagaggc agaagggatc accaaagaag atttattgcc ttatgtcgat attctctcca
    18781 aggtgtcttt tgccttttta cgaacggggt ttgagaaata tagaaccgag aaccctgcta
    18841 tttatcaaaa tgaatgcccc tatatttcaa ccggtgccgg gcagtattta tctgatactt
    18901 tcccgaattt gaaaggagta ggcattgatt tcttggcact agggtctcct tcttcccgag
    18961 tgcctgatgc ggaaaaccct aaaaattgcc atcgagcgat tttaggctac tataccggca
    19021 ggtttaccac tgtgattgaa gatatgcact tagcggaact ccctaaaaat gccaacatta
    19081 agcagttttt taatgcaccg tggcgaatta aagggttaga ttccagtcaa gtgacttgta
    19141 ttgtggaatt acagcaataa accacagata tattcatttt aggagaggct atttactata
    19201 gtaagcataa ctcaatcatt aattgaaaat aattattatt tgattttaat caagtcattc
    19261 ataacttaat tttgttataa atatgacctt gtttatagca ctattttgtt tcgataatga
    19321 ttataaaaga tacacactgg acatctcaac aagcctctcc aaatgctttc ccagaacgac
    19381 aggcacttat gcctatttgg ggtgggaaaa atattgaacg caatcaatgg caatctttat
    19441 ggctggaaca agcaccaaat gcgttattac aggatggttt agcttatttc catattccgt
    19501 tttgcgctag tcattgtatt ttttgtggtt tttatcgcaa tgcttggaag gaaaattata
    19561 gccagattta tactgatcgt gtgattagtg aacttcgata tgaatcttca ctatggcgag
    19621 gacaaggtaa gattcatgcc gtttattttg gtggaggaac gccaacagcg ttacatacag
    19681 aagatttagt acgattgatt cgagcttgtt atcgttattt gccactcgct gaagactgtg
    19741 aatttactat tgagggtaga attagccatt ttgatataga taaggctaag gcttgtattg
    19801 aagcaggcgt gaaccgtatt tctattggta ttcagacttt taactccgaa attcgcaaac
    19861 gtttagggcg caaacatagt ggcgaagagg ctcaaactta tttaaaagcc ttatcggaat
    19921 taaatgctgt gattgttgct gatttaattt ttggcttgcc aaaccaaaca gatgatatct
    19981 ggcaaaacga tattgaaatt gcgactagtt taccgatctc aggcttagat atttacgcct
    20041 ttaataatta tcctttcctg cctattaatc gcttaattga acatggaaaa ttacctgcgc
    20101 ccgcagggtt tgacacccaa agcttacact atgcttatgc agtagagaag ttaaaagcac
    20161 aaggttggca gcaagtgagc aataaccact ttgcttttcc aaatcgaggt gaacgcaatc
    20221 gctataatac tttggttaaa tcgaatatgc cttgtttggc atttggctcc ggtgcggggg
    20281 gaaattttgg tgggctgagt taccaagtac aatctgattt aaagacctac ttagattcgc
    20341 ctcttgatca gaaaagcctt tcttttttga gtaaacatgg tgaacataaa gcactgcttg
    20401 gtgtgataca acatagcatg gaattgggtt acttagatac aacgcctttt gaacaaaatg
    20461 cgaaagctga aaaattattg caacaatggg aagcgcttga tttactgaag cgtgaaaaaa
    20521 atcaagtata tctcaatacc agtggtcgtt actggtcacc aacattaatt cgtaaactaa
    20581 tgttaacact tcctcaatca agtaaggata acaacatgat aacgccatta actaaagaat
    20641 tagaaaataa attgcggaca aatttaaaag aaaacccagg gcaaatttta gaaatgctgg
    20701 caggaatgaa tcaatgtagc ttggaatcgg taattaactg tctgcccaaa gaaatggtaa
    20761 tgcaaacagg tggtgagcgt tttgtggaaa ttatgcaggc aattgctggt tggaatgaag
    20821 ctgtgacttt tattattcat acgcctgatg cgattgcaga ggtaactgct aaattgccac
    20881 aaggtaaaat tgggcgaggt ttttataatt ttgaacatgg tgtagatgga ggaattcacg
    20941 gtcatttacg ctatgaaaat tgtgctgcta tttacttact tgatcgccca tttatgggaa
    21001 aaagaacggt ggcgttaact tttatcaatc aaagcggtga ggcgatgttt aagatttttg
    21061 ttgggcgtga tgaacaaggt caattacgag aaaatcagat tcaagccatg cggaaattaa
    21121 ttggaggatg ctagtcatga ttttggtttg tggggcaaat gggttgttag gacgagcaat
    21181 ctgtgacaaa ttacctagag agaaaacgat agccgtctta cgaaaagatg ctatggatac
    21241 gtttttcagc gaacgaaata tagcagtaga aatagcagat ttattagatt tggaatcctg
    21301 caacgccttg ttacaaaaaa cacaaccgga aatcttgatt acggtagtag gaggaaaaaa
    21361 tgaacaaggt attcgtagcg acaaaacagc aaatattaat ttgataaaag cagttgaaaa
    21421 atattcacca actacgaaag tagttttagt tactagtgtt gggtgtgcag aacaatggga
    21481 tttaattagc ccattagcac agcaagcttt aggtgaagca ctaaaagcca agacggaagc
    21541 tgaagcttat ttacagcaaa cagcattaaa ttggctgatt attcgacccg gtgggttaaa
    21601 taatgatgaa gtaaatgatg agtatcagat tgtgcgtgat ttacctaatg aacggaaaat
    21661 gtatgtaagc cgtaaatctg tcgcaacagg catagtgcgt ttactggata gtacggaaaa
    21721 tcatcaaatc ttctctatta ttaatagggg atagtatatt tcaacgaagg caagcgggca
    21781 tattttatgg ttattttgca actataaaac agaccgcttg tgagatcttt ttctatttta
    21841 ttgagaactg gatgccgcat tcatctgcaa gtagcgaagc acctttttct gggtagcttc
    21901 gtccatatcg gtaaaaccga ccattccgtt aaatactgca atccattcgt ttgcatcatg
    21961 cattttagga tcacgttgtt tatggcacac gctgcattct gttttatagg tatttttggt
    22021 gttcgcccaa aagttagtga gatcttgggt aaattcggca ttttccaccc acacgttcat
    22081 tttcactttt tgccatacca agccggtgtt cggatcttcc ttgctctcta caatctctaa
    22141 cagtgggttg ttgctgataa aagatttctc aaataccgca tcggtaatat ttttactgaa
    22201 agaatgatac caaatccgcc cgaaaccttt gctttttcgc cataaattca gctcaatttc
    22261 agcggctttt gcggttgttt gcaccaattt aatttctgct ccggcttcta gctgcccgat
    22321 tttctgtgtc aaattttcat cggcaaataa agggattgtt tccgtggtgt aactgtttga
    22381 accggcaaaa caaaatgttg gcatgatgaa tgccaagaaa cagaaagcga ttttcgataa
    22441 tgatttcatc ataaacccca caaattagat gagaaattag gttatatgtt acacaaattg
    22501 agcaaaaaag cgttgattta catcataaaa ctgattttat gtcgatttct taattttttg
    22561 caaaaaaatc ccaaaaaatg actgcttaca agctataata accagtattt ttcgaccatt
    22621 tttcaaattc aagagaaaat aaaatgagta caaaattcaa cgtaaaaacc tttcaaggaa
    22681 tgattttagc cctgcaagac tactgggcaa gcaaaggttg caccattgtg cagccgttcg
    22741 atttagaagt gggggcaggc acctcgcacc caatgacctg cctgcgtgcg cttggccctg
    22801 agccaatggc gtttgcctat gtgcaaccat ctcgccgccc gacagacggt cgctacggcg
    22861 aaaatccgaa ccgtttacag cactactacc agttccaagt ggtgattaaa ccttcgccgg
    22921 ataacattca agaactttac ctcgacagcc tgaaaatgct cggtttcgac ccaacccaaa
    22981 acgacattcg ttttgtggaa gacaactggg aaaacccaac gcttggggcg tggggcttag
    23041 gttgggaagt gtggctgaac ggaatggaag tgacccaatt cacctacttc cagcaagtcg
    23101 gcggcttgga atgtaaaccg gtgacaggcg aaatcaccta cggcttagag cgtttggcga
    23161 tgtacattca aggcgtggac agcgtgtacg acctcgtgtg gtctgacggc gaactcggta
    23221 aaaccaccta cggcgacgta ttccaccaaa acgaagtgga gcaatccacc tacaactttg
    23281 aatacgctga tgtggacttc ctgttccaat gcttcgagca gtacgaaaaa gaagcccaat
    23341 acctgttagg cctagaaaaa ccattgccat tgccggcata cgaacgcatt ttaaaagccg
    23401 ctcacagctt taacttatta gatgctcgta aagcgatctc ggtaactgaa cgccaacgct
    23461 acattctacg cattcgtgcc ttaaccaaag gcgttgctga agcgtactat gccagccgtg
    23521 aagcgttggg gttcccgggg tgtaaaaaat aatcgtaggg acgccacgct tggcgtccgt
    23581 caataaatta caaaacggac acgaagcatc gtgtccctac aaggatttac gatgaaaccg
    23641 attttatact tcgccgattg gtgtccggat accgccccat ttgtggcaga actagaccgc
    23701 ttgggcattg aatatgagcc gtgcgacatc accaaaggag gctcaacact taaaccattt
    23761 ttgaaactgc gagacacgca ttctgccttt gaccacgcca aagccaacgg ctatattggc
    23821 attccggcat tgctgatcga aggcgaaaaa gtcgtgctgg atttggctga attagagggt
    23881 attttcggct aacaagcggt tgaatttggc ggaaatgttg caaaggagcc aataatgaag
    23941 acagtaatag cagataattc ggctgaattt gtgaatgaaa tttcacaact tattcaatcg
    24001 agtaagcaac gaatgaccgt tgcggttaat gcagaattaa ccttgcttta ttggcatatc
    24061 ggaaaacgga tcaatgacta tattttgcag ggtgaacgtg cggaatatgg gcaagaagtg
    24121 gtgaaaaatc ttgctcaaag tctgacggag caatttggta aaggttggag taaacgccat
    24181 ttaaattata caatgcaatt tgctacaact ttccctaatt tggaaattgt gcacgcactg
    24241 cgtgcacaat taagctggac acattttaag cagattattc atattgatga tccaacaaag
    24301 cgagggttct atgcaacaat ggctgcacag gagcgttgga gtacaaggac attagaagat
    24361 cgcattggct cattattgtt tgaacgcacg gcaatttcca aaaagcccga tgaaaccatt
    24421 attgctgaat tgagtttgct acgtgaaaaa ggcgaatata atcagtcaat ggtgttgaaa
    24481 gatccctata ttttggattt tctcgacctt aacgaccgtt atatggaacg tgatctcgaa
    24541 gatgcgattc tacgagagat cgaacagttt ttactggaac ttggggcggg ttttaccttt
    24601 gtcgcccgcc aaaaaaggat tcagattgat aatgatgatt tctatatcga tctgctgttt
    24661 tataaccgta aactcaaacg cctgattgcg attgaactaa aaaccgaaag cttcaaacat
    24721 tcccacaaaa gtcaaatgga actctatttg gcgtggctgg cgaaatacga gcaagaagca
    24781 gacgaaaacc caccgcttgg aatgattctc tgcaccggta aaaagcagga gcaagtggaa
    24841 ttgttggatt tgaaaaattc cgatattcat attgcggaat atatgaccgt gttgccgagt
    24901 aaagcggtat tggaacaacg gttgcatttg gcggtggaaa gggcgaaaga gcggttttta
    24961 ctaaaatagc aagcggttaa aatcagcgga aatgttgcaa aatgaaagta tgatggaaac
    25021 gatttggttg catattccgt tggtgggtgg ttagagattt tcaaatctcc cccctccccc
    25081 tctttggcta aagagggggc gatcatttag tgagtaattt taattcatct gactatttac
    25141 aatcttaatg aagaaagatg aattataaat ttacgaagat caaattcccc tttttagcaa
    25201 agaggggcta ggggagattt ggcagaagtg aaaacgtagt gagagattga ttagtctagt
    25261 acttttttgc aagttaatca taaagttgct ctcatttctt gataagtaca ataaaagcaa
    25321 agaaaaggat ataataaagg aaatatatgt caattaaaaa attattatct acaactatag
    25381 atcaacttga gaatataata caagtatcgg gcgaaagttt cgaaaaaatt acaagtgact
    25441 tagcagaaaa agcaaaagaa ttaaattcag aatataatat taaatgtgaa aaattgggat
    25501 acgccataac attatttgaa aaaaactcgg aaatagaaaa acgctacata tcattattat
    25561 ctgactttga tatggataca agtataaaag gatttgaaaa attgtctcta ctaatgaatg
    25621 gcaagaatga taatgctaga aaagaagctg aagaacattt taatgaatta caaaatgggc
    25681 tattagaagc tcaagattat aaaaaagatt tagacatcaa aattaggaaa ttagctagag
    25741 agctttataa tgaaaatata gcacaattag aaatagaaga aatcaaagaa catttatata
    25801 aaaattggta atttaaacaa tgacaacaca aaacttcctt gccgagatcg gcacagaaga
    25861 gctgccaccg aaggcactca aaaaattagc gaccgcattt gcggagaatg tagaaaacga
    25921 attaaaccaa gcaggtcttt cgtttgagaa agtggaatgg tttgctgctc ctcgccgttt
    25981 ggcggtgaag gtgttgagcc ttgcggaaag ccagccgagt aaagaggttg agaaacgagg
    26041 gccggcggtg tcggcagcgt ttgatgccga aggcaagccg actaaggcag cggaaggctg
    26101 ggcgaagggc tgcgggatta ccgtagagca agctgagcgt attgccaccg acaaaggcga
    26161 atggttggtg catcgtgccg tgattgaagg tcagccgact aaaaatctgt tggtcgatat
    26221 tatcgccaaa tcgctggcga acttgccgat tccaaaaacg atgcgttggg gcgataaaac
    26281 cgagcagttc gtccgccctg tgcataccgt gacactttta ttcggggcgg agttgatcga
    26341 aggtgagatc ttaggcgtga aaagcggccg tactattcgt ggtcaccgtt tcttaggtga
    26401 acgtgagttc caaattgaga acgccgatca atatccgcaa ctgttgaaag atcgtggatc
    26461 tgtggtagca gatttcaatg agcgtaaagc cttaattctt gcaaaatcac aggaaaaagc
    26521 aaccgctttg ggtggcgttg ccgatattga agaagatttg ctggacgaag tgacctcgtt
    26581 ggtggaatac ccgaacgtac tcaccgccaa gtttgaagag cgtttccttg ctgtgccggc
    26641 ggaagcctta gtttacacca tgaaaggcga ccaaaaatac ttcccgattt attcaaaaga
    26701 cggcaaattg ttaccgcact ttatttttgt gtcgaacatc aatccggaag acccaagcaa
    26761 aatcatcgag ggtaacgaaa aagtggttcg cccacgtttg accgatgcgg agttcttctt
    26821 caaaaccgac ttaaaacaga agttggaaga ccaactgcca cgccttgaaa ccgtgttgtt
    26881 ccagcaacag cttggcacat tgcgtgataa aaccgctcgc attgaagcgt tggcaggtga
    26941 aattgcgaag caaatcgggg cagatgaaac caaagcgaaa cgtgcaggtc tcctctcaaa
    27001 atgtgacctg atgaccaata tggtgtttga atttactgat acccaaggcg tgatgggtat
    27061 gcactatgcc cgccacgacg gtgaagatga agaagtggcg gtggcgttaa acgagcagta
    27121 tatgccacgt tttgctggcg ataacttgcc aaattcattg gtggcttgct cggtggcgtt
    27181 ggcggacaaa tttgacacgc taacagggat tttcggcatt ggtcaagccc cgaaaggcag
    27241 tgccgacccg ttcgccctac gccgtgcggc acttggctcg ttgcggatta ttgtggagaa
    27301 aaatttaccg cttgatttaa ccgatttagt ggcgaaatct gctcaattat ttggcgataa
    27361 actcaccaac aaagacgtgg ttgaggacgt ggtggacttt atgctcggcc gcttccgtgc
    27421 gtggtatgag agcgaaggca ttgcggtgga cgtgatccaa gccgttctcg cccgccgtcc
    27481 gaccaagcct gccgacttcg atgcccgtgt gcgtgccgtg tctcacttcc gcacccttga
    27541 cagtgccgaa gccttagccg cagcgaataa acgggtgagt aacattcttg ccaaagccga
    27601 tattgcaatt ggcgacattg atgtttcagc ttgcgtagag ccagcagaaa aagcattagc
    27661 cgaggcggtt attgcgttga aagccgaagt tcaaccgctg attgcacagg gcgactacac
    27721 cgctgtgctg gataaattag cgaacctccg ccaaccggtt gatgccttct ttgacggagt
    27781 aatggtaaat gcagaagacc aaaaactgcg tcaaaaccgc ctcgccattt taagcacgct
    27841 acaaggcttg ttcctgcaag tggcggatat ttcgctgttg caataacaat aagtttgcaa
    27901 taattgcaaa attttaatga aaatagaccg cttgcagtaa ttgtgatctg caagcggtct
    27961 tttttgcttg aaattttacc aaaggcggga ttatttaagt tttggtttat tcaccataat
    28021 ctcgatgact tggcggtctg tgtattgcat actacgagag gcaatgctgc ataagttatt
    28081 aattgaacga tcaatatcgt gttcgacaat tccttcgttg cctgttactt ggctattatc
    28141 catagacatc agaatggatt tatagcttga tgttacgctg gtggagactt tcatcgcaca
    28201 actgtttgaa gcaccatcac agataatacc gctaatatcg ccgatcatac tactaattgc
    28261 catactgata ttctcaaatt tccctgtgag cagccacgct atgccggcac agcttcccat
    28321 agccgcggtt gttacggcac agagtgcaga taatttcggt aacttgctgt gaatataaat
    28381 tgccatgagg tgtgataaaa agagtgctct aatgcgttgc tcatcagtga catttaaatg
    28441 gcgggcaacg acaacaatcg gcatagttgc tgtaattcct tgattacctg aacccgaatt
    28501 gctcatagca ggtaaacttg caccgcccat tctagcatca gaggcagagg tggtttctat
    28561 aacaatgcga ttaagcaaat catcactgat tagacctaga ccaatctgtt tttgcaatgt
    28621 ccttccgata tgtagcccat aatcggcacg taatccttct tgtgagagtg cggaatttaa
    28681 ttgtgctgct tgctcaataa agcgaatttt ttccaattcg atttgcatag aaaaattaaa
    28741 tatatctttt gccgaaagtg aagcaaagat ctcagtagta ttatcgttat tgacggcaca
    28801 aggtttgctt aaaatagttt gcccgttttt ttcaatgtaa atgacattgg tatggtgttc
    28861 agcaatacga acacatactc gattcgcttg gtgaaatagt gttgcttcag aatatagaat
    28921 atgttctgtt tcgaaaatag agacagacac tttatcggta tttaacatag ctttagcttg
    28981 cttaacctgt tctggcgtaa tattttttaa tacttctaat ccaccatcag gctcccctcc
    29041 gattgctcca atagctgccg ccataggcaa tccgacggtt gcagttcccg gtactgctac
    29101 tcccatccca tttttcatca agttagggga aacttttgcc tcaatacgtt ctggtaaatg
    29161 acctaaatat tggcgtgcaa tggcggatgc aagggcgaga gaaataggtt ctgtacagcc
    29221 taatgcaggg acaacttcat ggttgactgc atgtaaaatg gattgtacta atttttcgca
    29281 gtgaatattc atagataaaa ccttattact ctaaaaatgt gaggaatgga gaaatacata
    29341 ataaaatgcc ggtaatgata ataatattga gtgctagccc tttatatttg aataatgcag
    29401 gcactttata gactaaatag gccggaatca agcacccaac taagccaaaa ataggactac
    29461 agattgaggt aaagcttaaa accggtgcat ttaatacaat cgcactccaa gccagcagaa
    29521 tggaaaataa cataatccct ttctgcacat aattaggatt gattttttca gccgggaatt
    29581 ttcttaataa taggttcatc acaatgcctt gagtggcttc tctaaaacct aaatataccc
    29641 cgaaaaaggc tgtcataacg gcaaaaatat ttaatgcaac acctacatag gttgcccaac
    29701 taccagggaa aaattgggct gcaattgcta atgcggaaac attttgctcg tatgctttga
    29761 gcgcttcttc tctccccatt gcaagtgtaa aagagacagc gtaaaaaaaa acggtaataa
    29821 ataagatagc aaatgcaata ttcatcgctc gtagggcttt atagcgcgca acttcacgag
    29881 actgttcttt agcacggtaa gaaattacca ttgggctgag agtttgcaag aagagtatag
    29941 aggttagggt gaaaggaagg gtaatgatgg catcttttat aagtttgccg aaaggaggca
    30001 ttgcaccgat attatggagt tgccacattc caatcattgc aagccctaag gcggcaacga
    30061 caaatagctt agttaatacc ataaatgtag atattttaaa cagtagcttt tcgcctcgag
    30121 aagataaggc aactaatata cagattagca ctaagccata aaatggatta tcagagagta
    30181 gtgtattggt aatgccgaag gtaagaagat aggaggcact gtcgtttgta attgcggtag
    30241 aataaacaaa catccaaatc actaacataa taaaataaag tacacctaaa aagattcccc
    30301 agtttttgcc caggtagcca ctaataacgg tggggtaatc tttgcattcc ggagattctg
    30361 ctaaagtatt aatgaacaga cgctgaaaaa ggtacatcgc cgggtatccg ataatagaag
    30421 aaagtagaaa aacccacatg cccataagtc ctacttgtac cggtaaaaag acgatgcctg
    30481 ccccgatagc cataccaata ctcataatga tccagccgaa gtcggtagaa tcaaattttg
    30541 ttgcttgttt aaattcggca ggcgagagtt tttgagtatc catagagtct ccttaaatcg
    30601 taacagtata attaagtgtt atttttgaat tctcttaaat gtttataaat tgcgtggctg
    30661 gttagggaga gtttttctgc cacaataggt actgcctctt ttagctcaaa gatgccattt
    30721 tcaaacaaat agaagataat ggatttctta tagagttttg aatgtttggt agtgtgttgc
    30781 tcaatgtgag taactgcttt tagaaaggtt tcttcaataa gttcttttgg gtgagtaata
    30841 aagttttcac ttttataatg aggcggaata ggatcgtaat tcataaaaga gctaacggtt
    30901 ttatctaatg gtgtcgataa atttaaatta atacaaaata atccgatagg tttgccctca
    30961 tgcccgataa taatatgcgt ggtggactta actaagttac cgttatttaa ccgtgaaaag
    31021 taaaccagct cagtattaga ttgatctttt tggtaacatt ttagtaactg taatccttta
    31081 tctgtaatag gcgaacctat ttttcggtta gtatgatgtc cgttaatgat tttaataacg
    31141 gatttttcat aggcattcaa tgaatgaata accacctcac agaattctcc taataaccct
    31201 gctattgctt cacttaatga gaaataagac agcataattt ctttgtctaa atcatgaaga
    31261 tactctaatt tatctggcat aacttttact ccaatttttg tgaattataa gaatgagtaa
    31321 attttaaagt caattatatt taactttatt aagagttaaa agtcagtatt ttttgaccaa
    31381 gatcatattt tgagggaaag atataagagg acaaaccaaa taagatttgc ctcgattctg
    31441 actaggaaaa gtggcaaatt caatctatct tgattaaaat aatgtacgta cttataggaa
    31501 gaaggaaaac acaatgtcag taaaaaccga agttttattt agtaatcatt ggaatgttcg
    31561 agtgagtgat ccgggctttg aaggctcgcc aagccactat tttgaaaccg tatatttaac
    31621 gctggaagcc tttattaacg gcgaaaatgt acattatgaa tttactcgta aagtggagca
    31681 agaagtgaaa actcatcgca gttttactga tgtgaatgaa ttgtttgaat ttctcggcga
    31741 atatttaagc cctgttgcac ttggtaatgt tggcgtgcgt atcggtcagt tggggctagc
    31801 ctaatctcaa agggcaaatc ttttgccctt gcaacatttt cctaaaaatt aaccgcttgt
    31861 tattacgttt atgaccactt ccaaccctct tttccaacaa acccgcccct attgggattt
    31921 cttacgcatt gaaaagcaag ttagcccgca taccttaagc aattatcaac gccaattaat
    31981 ggcggtgagc gagctttttt cgcaagcagg cattgaaaat tgggaagagg tcgaaagtag
    32041 ctcggtgcgt tggatgttaa gccaaagcca taagcaaggg ttgagtgcga aaagtatcgg
    32101 cttacgcttg gtggcgttac ggcaatggtt tgtctatttg attaaaatcg ggcgaatgtc
    32161 ggcaaacccg actttagggg tgaaatcgcc gaaagtaggt aagcatttgc cgaaaaatat
    32221 tgatgcggag caggtcgggc agttgctggc gattgagagt gatgagccga gcgatattcg
    32281 agatattgcg atgatggagc tgatgtatag ttccggcttg cgtttatcgg aattacaagg
    32341 gctggattta ggcgatatgg atttatcggc acgagaagta cgggtgcaag gtaagggtag
    32401 caaagagcga attgtgccga ttggctcgca agcgttaaaa gcgttaaatc gctggttaga
    32461 aatgcgtttg caatttaagc cgcaagataa tgcggtgttt ctgaataagc gaggtgggcg
    32521 gttatctcat cgttccattc agttggcaat gaagaaatgg ggtgagcgac aagggctgga
    32581 aagccatctg catccacata aattacgtca ctcttttgcg actcatatgt tagaggcaag
    32641 cggtgatttg cgagcggttc aggaattatt gggtcatagt agcctgtcca ccactcaaat
    32701 ttatacgcat ctggatttcc aacacttagc taaaatttat gactctgccc acccaagagc
    32761 aaggcggaag caggaagatt aggcattctc cggttcaagg gttttcattt tgcagaagaa
    32821 ataccaatat tgaattatca ctaacactac taacgcaatt ttcccaccga tatggggcag
    32881 tgcaaagaaa gcaaatagtg taaacggaaa cgaaatcgct aaaatcgtga ttttttgctt
    32941 catcgtcatt gcccgtttct catcatattc ttgcagatat tttttgtata atttggtttg
    33001 aataaaccac tggcggattc tctccgagcc tttagtaaag cagaacagag ccaaaagtaa
    33061 gaacggtgtg gtcggcaagc ccggtaatac tgccccgatg atgcctaaac caatacaaat
    33121 aaaaccacag ataatataaa ggtatttcat aataattaag ttattgataa tgaatcgcaa
    33181 ttatcctaaa gcaactttag gctgatttca accagtttat agcgatggat tcaagcggtg
    33241 gttttatctg attttcttgc aaatgaaata aaaaaacctg ctgattgctc aacaggttta
    33301 aagactggcg gaggaagtga gattcgaact cacggagggc gttaaccctc gccggttttc
    33361 aagaccggtg cattcaaccg ctctgccatt cctccgttga aaacgttgca ataatagaga
    33421 ttattgcgaa catcgtcaag taataaatct taaaagctgc ttattcgttc tttttttcag
    33481 cacaatttat tttctaatta accaaacgcc actttcaata tggtgggtgt aagggaattg
    33541 gtcaaaaaga gcggcttttt caatccgatg ggtttggctt aattgttgta aattctcggc
    33601 aagggtttcc ggattgcaag agatatagag aatccgctca tacgcttgca ccatatttaa
    33661 tgtagcttga tctaaccctg cacgaggtgg atcaacaaaa atggtattgc attcgtaggc
    33721 gtttaaatca atccctttta agcgataaaa ggctcgcaca ccgttcatcg cttgggtaaa
    33781 ttcttctgcc gacattcgga taatttgtag gttaacaatg ccattttttt caatattgta
    33841 ttgagccgat tgcactgaag attttgagat ctcggttgcc agcactttgc ggaagttttc
    33901 cgccaaggca atcgaaaaat tgccgttgcc gcagtaaagc tcaagcaaat cgccttcact
    33961 attttttgtg caatttctcg cccattccag cattttaata ttcatttccg cattcggctg
    34021 ggtaaagctg ttttccactt ggcgatacac ataatttttg ccgtgtaccg gtagaatttc
    34081 ttccacataa tcgcaatcca gtgcgatttt ttgtttattg gcacgcccga taatttgcac
    34141 tttgaaacct tgttgctcta aacggctttt taaggcgttt gcctgttcaa cccattcttc
    34201 attcaggctt ttgtggtaaa gcattgagac tgcaatttca ccgcttaagg tgcttaaata
    34261 atcgatctgg aacagcttgc gagtcagtag ttcattgcct ttaatttccg ccaataatgc
    34321 ggtcatcata tggttaatca gctcactggc aatagggaag ctatccacac gataacgagc
    34381 tttggtttca gggttgaaca taatgtggta cagctcgcct tcctcgtgcc acactcgaaa
    34441 ttctgcccgc atacggaaat ggcttggctt tgaggcaaat acctcaatcg caggcgggtt
    34501 aaacggcttg agtaaagcgg tcaaattttc ggtttttttt gcaagaagat cggaatattg
    34561 ttcgatagga agagtcattt tttaccacaa atagcaaatg aaaaaacaaa ccacgaatta
    34621 cttcgtggtt ttaaattaga aattattcag cagcactgaa gtcatcgccg gcatcgctac
    34681 ctgcattgcc tgaaagggtg tagatgcgtt ttgttttact agttaatgtg cggtatttta
    34741 accacgcttt ttcaatgtca gtttctgcta cctcttcgcc tttcattacc gcaacgaaac
    34801 gtttttcttc ttgagttgcc ggcttacgtt caccactttc taaagccaag caagcttgac
    34861 cgaattgttc taaagtttgt gattcacgaa tggtgtaatc gccgtggcga gagaaaccac
    34921 gtggataatt tttatcgtca aaaaagcggc gcgtaacgct gaaactgtct gccataataa
    34981 tgcctcgttg tttgaaatta gggaaaataa aatcggcata cattaaacaa aaacagcgaa
    35041 taaatcaatg ccttaatgta aaaaagcggt caaatttggc aaattttttg caaaaaactc
    35101 tttaaggaga aatattgatc ctttt
//
LOCUS       DANLVT010000011        34813 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.011, whole genome shotgun sequence.
ACCESSION   DANLVT010000011 DANLVT010000000
VERSION     DANLVT010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 34813)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34813)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34813
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.011"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            20..496
                     /locus_tag="PXC99_000458"
     CDS             20..496
                     /locus_tag="PXC99_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416946.1"
                     /translation="MELGKTTETDVKEMYNLEPEGVNKYSKGNQYFIDPTQLDLEDLK
                     STLIIFDEKGVLVFVGSEFNSISSIEDSKNRYKKFDYLYKILASKYKLVKKERPFVGD
                     QYAKFKDGNSEIELSEPHMGGFKINLTYAKKEFLDAFQKIQSEDKKQKTKDEASSL"
     gene            complement(817..1950)
                     /locus_tag="PXC99_000459"
     CDS             complement(817..1950)
                     /locus_tag="PXC99_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine biosynthesis PLP-dependent protein"
                     /protein_id="HDL5416947.1"
                     /translation="MTKFNNIETTLVQIGNRTDPRTGAVAMPIILSTAYGRDGLGEST
                     GWDYTRTKNPTRAVLEQGIADLEGGDAGFAMASGMAAIQLVMSLFKAPDEWIISSDVY
                     GGSYRLFDFSHKNHGTLKPVYVNTADLAAIEAAITPNTKAIFVETPSNPLMEECDVAA
                     IAKIAKKHNLMLIVDNTFLTPALFRPIEHGADIVIHSATKYLSGHNDVLAGLIVAKDS
                     DATKVNGQNLTERLFYFQNCAGAVLSPFDSYLAVRGMKTLALRMERHQSNATELAKFL
                     AEQPEIDSVLYSGKSGMLSFRLQKEEWVAKFLKAIKLITFAESLGGAESFITYPATQT
                     HMDIPEAERITRGITNNLLRFSVGLEHVEDIKADLLQAFKQLK"
     gene            complement(1967..2779)
                     /gene="dapB"
                     /locus_tag="PXC99_000460"
     CDS             complement(1967..2779)
                     /gene="dapB"
                     /locus_tag="PXC99_000460"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005696006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HDL5416948.1"
                     /translation="MTLKIGIVGAGGRMGRQLIQAVHNAQGVELGSAFERKGSSLVGS
                     DAGEVAGVGTLGVVISDDVAQNVAGFDLLIDFTRPEGTLEHLDICVAHHKQMVIGTTG
                     FDDAGKAAIKAASEKIGIVFASNYSVGVNLVFKLLEKAAKVMGDYCDIEVIEAHHRHK
                     VDAPSGTALSMGEHIAKTLGRDLKTHGVFERNGITGERKRDEIGFATIRAGDVVGEHS
                     VWFADEGERVEIAHKASSRMTFANGAVRAAKWLNGKQNGLFDMTDVLDLNNL"
     gene            complement(2830..3207)
                     /locus_tag="PXC99_000461"
     CDS             complement(2830..3207)
                     /locus_tag="PXC99_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416949.1"
                     /translation="MGIKVLFGTKISAELQYLPEKDLVKILQFKQHVEIYGLENLAGR
                     NKSSDDVPTNDPYWAEKVAKAQKYSLWHYHIGIPEYDTSQGFGNYTSEYILHYVKGEN
                     FIQIVDFTSHPPFKLPSESYLQN"
     gene            complement(3197..3670)
                     /locus_tag="PXC99_000462"
     CDS             complement(3197..3670)
                     /locus_tag="PXC99_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416950.1"
                     /translation="MMKNLPLSMADTLAVIYPAFDFAADDKPATEQQISLLNFRITMA
                     NQLLIACIETIEKNPNFWAEIDLNDFKKYLNQNKVVIFDTQQYFTDGSRTMAILDNMK
                     SNIRKIEQQLSQATAFNFDLERMKERLNDTFHEVPKDITNVNEFRNWLKGVANGH"
     gene            complement(3738..4826)
                     /gene="rlmM"
                     /locus_tag="PXC99_000463"
     CDS             complement(3738..4826)
                     /gene="rlmM"
                     /locus_tag="PXC99_000463"
                     /EC_number="2.1.1.186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytidine(2498)-2'-O)-methyltransferase
                     RlmM"
                     /protein_id="HDL5416951.1"
                     /translation="MFNKLALYCRAGFEKEVAGEITDKAAQQGIFGFANLKENSGYVI
                     FECYQAGEADRLAQALKFEQLIFVRQMLVVGDLLQNLSENDRISPILAQYAELNPRQS
                     SDVFVETPDTNEAKELLTFCRKFTVPLRSALKKQGWLGKSENMQGSVSLHILFTRPGA
                     CYVGYAYNHNKSPFFMGIPRLKFPAEAPSRSTLKLEEAILTFIPQAEEKKRFNDTMVG
                     VDLGACPGGWTYQLVKRGVFVYAVDHGKMAASLHETGRIEHCPEDGFKFQPPKRKQID
                     WLVCDMVEQPIRISKLIAKWLTNGWCRETIFNLKLPMKKRYQEVQLCLNFLEEELTKH
                     GFWFKMQAKHLYHDREEITVHIAVMGQK"
     gene            complement(4826..5218)
                     /locus_tag="PXC99_000464"
     CDS             complement(4826..5218)
                     /locus_tag="PXC99_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HDL5416952.1"
                     /translation="MKNKFVAIAAFSGLFTVAFGAIASHALSAQLSPKALGWIETGIK
                     YQMFHTLAILALGLFQIANFGQNPPVCRAKAFNIIGSNWALGILLFSGNLYLLALNVP
                     TIHWLTPIGGLCFMLGWIALIYISVRKA"
     gene            complement(5325..6726)
                     /locus_tag="PXC99_000465"
                     /pseudo
     CDS             complement(5325..6726)
                     /locus_tag="PXC99_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252330.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
     gene            complement(6881..9238)
                     /locus_tag="PXC99_000466"
     CDS             complement(6881..9238)
                     /locus_tag="PXC99_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin guanine dinucleotide-containing
                     S/N-oxide reductase"
                     /protein_id="HDL5416953.1"
                     /translation="MNTALEKGKFVFLDKPKNTITTAAHWGALNVTVENGKVVKSEGS
                     LAKNHQNELQDVVADQLYSPVRVKYPMVRKGYLEGNKDTTLRGRDKWVRISWDKAFEL
                     VSGEIQRVREQYGSESIFGGSYGWYSSGSLHASRTLLQRYLNVTGGFTNTKGDYSTGA
                     VQVIMPYVLGNIEVYAQQTSWHTIVESTELLVIWSSNPLNTLRIAWTSAEPEGIDYLA
                     KLKASGKRIICIDPVKSETCQFLEAEWLPINTGTDVALILGIAHTLITENKHDHDFLT
                     KYTVGFEQFADYVLGKADNLPKTAEWASQICDIPEEVIKTLANDFVTHRTMLMSGWGL
                     QRLQHGEQSHWALVTLAAMLGQIGLPGGGFGLNYRYSTNGLNVNSGVRLGAINAGKPN
                     PDMPFFPVSRIADALLKPNQPYDYNGQTLHYPNIKLVYWAGGNPFAHHPDTNYLVKAW
                     QQPETMIVNECYWTPTARMADIVLPATTSYERNDLTVAGDYVAKHIIPMKQVVEPQFE
                     AKNDYDIFAELAKRAGKEQAFTEGKSEMEWLKEFYQVAFEAGEKANTPLLDFEAFWAE
                     NKVLSFEAEHQNNTFVRYQDYRTDPIKHKLATPSGKIEIFSETIAKMNYEDCKGHPTW
                     FEHHEYSGKTNEAEPLALVTPHIKYRLHSQLAYSSLRQYYEVNGREPMLIHTKDAADR
                     GITSGDIVRIFNKRGQVLAGAVVTDGIIQGTVALYEGGWYDPQDLGKTDTPLCKNGNP
                     NVLTRNEGSSKLGQGNAPNTTTVQVEKYVGDAPEVTVFKAPFFSE"
     gene            complement(9374..11980)
                     /gene="acnB"
                     /locus_tag="PXC99_000467"
     CDS             complement(9374..11980)
                     /gene="acnB"
                     /locus_tag="PXC99_000467"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014391308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HDL5416954.1"
                     /translation="MENFIENYQQQVDERAALGVVPQPLSAEQTAQLVELLKNPPAEQ
                     AVFLLDLFTNRIPAGVDEAAYVKAAFLADITKGVATSPLISPAHAVKLLGTMQGGYNI
                     ETLLSALDNPELAPIAVEALSKTLLMFDNFHDVKERADQGNPFAQQVLESWANADWFT
                     SRPKLAEKLTVTVFKVTGETNTDDLSPAQDAWSRPDIPLHALAMLKNERDGIFPDENG
                     HTGPIKQLEALKEKGFPLAYVGDVVGTGSSRKSATNSVLWFMGEDIPYIPNKRAGGVV
                     LGGKIAPIFFNTLEDAGSLPIEVDVTNLNMGDVIDIYPYAGKICKHNSDEVLAEFELK
                     TEVLLDEVRAGGRIPLIIGRGLTHKARVALGLPESDVFIKPQSVSESNKGYTLAQKMV
                     GRACGVEGVRPGQYCEPRMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAA
                     YPKPVDVITHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIG
                     ISFPAGSGLVAFAAATGVMPLDMPESVLVRFSGTMQPGITLRDLVHAIPYYAIQQGLL
                     TVEKKGKKNIFSGRILEIEGLEDLKIEQAFELSDASAERSAAACTIKLNKEPIIEYLN
                     SNITLLKWMIAEGYDDKRTLERRIANMQAWLDNPELLEADENAEYAAVIEINLDEIKE
                     PIVCVPNDPDDARLLSQVQGDKIDEVFIGSCMTNIGHFRAAGKLLSQAQGELPTKLWI
                     APPTKMDAGLLTEEGYYSIYGKSGARVEMPGCSLCMGNQARVANNANVVSTSTRNFPN
                     RLGQGANVYLASAELAAVSALLGKLPTPQEYLDYMNNLQKDKDDIYRYMNFDQINSYV
                     KKADNVIVQVAV"
     gene            complement(12000..13247)
                     /gene="icd"
                     /locus_tag="PXC99_000468"
     CDS             complement(12000..13247)
                     /gene="icd"
                     /locus_tag="PXC99_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HDL5416955.1"
                     /translation="MQTQVQIPQGETIQLNQDGSLQVPDNPIIPFIEGDGIGVDVTPA
                     MKAVLDAAVEKAYQGKRKIAWMEIYAGEKANKLYGENTWLPDETLELIRQYHVAIKGP
                     LMTPVGGGIRSLNVAMRQGLDLYNCLRPIRYYDGTPSPVKHPELVDMVIFRENSEDIY
                     AGVEWVAGSPEANKVIEFLQQEMGVKKIRFTEDCGIGIKPVSKQGTQRLVRAALQYVI
                     DNNRKSLTLVHKGNIMKFTEGAFKEWGYQVAEEFGAKLIDKGPWMSLTNPKTGEEIII
                     KDSIADAFLQEILLHPTEYDVIATLNLNGDYISDALAAQVGGIGISPGANIGFEAAIF
                     EATHGTAPKIAGQNKGNPGSLILSGEMMLRHLGWVEAADLVVKAVSKTIANKTVTFDF
                     AEMLEGVTLRSTSEFAQDIIANM"
     gene            13481..14761
                     /locus_tag="PXC99_000469"
     CDS             13481..14761
                     /locus_tag="PXC99_000469"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005762304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HDL5416956.1"
                     /translation="MSKATLTLETGEKLELNMQKGTLGYQTIDIQPFLKHKLFAYDPG
                     LVSTAVCRSNITYVDGDEGVLLYRGYPIDQLAKHSDYLEVGYMLLFGERPTKEEYKDF
                     VQLIKKHTLVHEQLTKFFSGFRRDSHPMAVMCGVSGALAAFYHDAIDVNNQAHRELTA
                     IRLLAKIPTLAAMCYKYSIGQPFMFPQNHLSYAGNFLYMMFATPCEPYEVNPVLERAL
                     DRIFILHADHEQNASTSTVRTAASSGANPFACIAAGIASLWGPAHGGANEACINMLKE
                     IGTVDRIPEFIARAKDKNDPFRLMGFGHRVYKNYDPRAKVMRETCHEVLKELNIDNPL
                     FEVALELERIALSDPYFIEHKLYPNVDFYSGIVLKAIGIPTSMFTVMFALARTVGWIA
                     HWKEMYLQGNIKIVRPRQIYTGHTKRDFEPMDKS"
     gene            complement(14834..16063)
                     /locus_tag="PXC99_000470"
     CDS             complement(14834..16063)
                     /locus_tag="PXC99_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416957.1"
                     /translation="MFQAEPKNGKVTVEVLKQYLIDELKIDEEEIAIVIGNQHELDNI
                     DLFNPQCKINYIITVEALKEGWDCPFAYIFCSVQNVSSSKEAEQLLGRVLRMPYAKHR
                     QIEDLNRAYAPLSSKSFGETARNLQDKLIGMGFEALEVAEMLRIPQQENWIGNEGDLF
                     YTPTTVLALTQLPEMSDLSEAKRSQLKITEQEGHILVQVKGNLSEKLEKALIRTATGK
                     KKEQIEQQLQIHQNRVEILSSPAEKGEIFKVIPQLCMNIQGEFDLADSQVLLDYQSWN
                     LLDYPAKLDGFRLQENSQSFEIDVEDKRVSYHFNQQQLSFSDDWLRNPVKRGFSLPLA
                     HQNFYPDFIVELIDGRILIVEYKGEQLKSNEDSKEKALIGNLWEKLSQGKGLFIMAVK
                     SDENGQDVRTQLLNKLA"
     gene            complement(16030..17019)
                     /locus_tag="PXC99_000471"
     CDS             complement(16030..17019)
                     /locus_tag="PXC99_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL5416958.1"
                     /translation="MKLKNYQNEALNRVSHYFSACLQSDAKTAFSQIQPEYSYKIPSE
                     HSNLRDVPYVCVRIPTGGGKTLLASHSIARIAKQYLDCDFPVTLWPVPSRTIKTQTTE
                     ALKNPQHPYRAVLDKTFNREVMVIESEDFDLLRPQDFGNKAIVIVSTIQNFRVENQDG
                     RKIYAFNEKLTAHFERLLPHIQANLEKISTTDLQENGLTSKQTGKIKCSFANLLRAYQ
                     PLVIVDEAHNARTSLSFDVLSQLSPSAILEFTATPNTDRKAGSNVLYHVSASHLKAEE
                     MIKLPIVLTEHHNWQQAIDGAVINRGALAQKAQYESEYVRPIYCFKLSRKTAK"
     gene            complement(17035..17553)
                     /locus_tag="PXC99_000472"
     CDS             complement(17035..17553)
                     /locus_tag="PXC99_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL5416959.1"
                     /translation="MNRRYIGIEIGEHAKTHVVPRLKKVIEGEQGGISKAVNWQGGGS
                     FRFCELGEEVFDAFGSLNPNIRFDDLAAHIWYLENHFPLQKNSEKSPLVGTFNGKAYY
                     LLYNGILGDKRPQSGNVLTRKLMAELPYFAEFIQQGMDIVVYGEACRLGEVQLAEKKI
                     TFKQIPYDVMSR"
     gene            complement(17563..17634)
                     /locus_tag="PXC99_000473"
                     /pseudo
     CDS             complement(17563..17634)
                     /locus_tag="PXC99_000473"
                     /inference="COORDINATES: protein motif:HMM:NF013704.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(17641..18594)
                     /locus_tag="PXC99_000474"
     CDS             complement(17641..18594)
                     /locus_tag="PXC99_000474"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL5416960.1"
                     /translation="MPDSRQPTADSSASAETLSKVKQNLIIQGDNLSALKSLLPFYAG
                     QVKCIFIDPPYNTKSAFTHYDDNLEHSIWLSMMYPRLEILRELLAEDGSIWITLDDNE
                     SHYLKIMLDEIFGRKNFISNLIWEKKRKPSFLGKVGKVTDNLFCYAKNKNELNELNDL
                     TYLETSGDETYPLYNAGNSREILVFPPRSIKFKKHSDGLYKPTIFSKKTSSITLISEL
                     IIEDQWNKNTVEIEGEWRYSQKSIDEQLKNGDYYIIKSLDFRPRRVFERSAEKKKIHN
                     LISRAHYDMATNEDSASEHLELFGEDIAEDSFDYPKPEKLI"
     gene            complement(18548..18694)
                     /locus_tag="PXC99_000475"
     CDS             complement(18548..18694)
                     /locus_tag="PXC99_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methylase N-4/N-6"
                     /protein_id="HDL5416961.1"
                     /translation="MTTLTWYGKEEAVKKAKQTPYCLLRELPDFSHNIARQPTADSRQ
                     LSFC"
     gene            complement(18835..21321)
                     /gene="torA"
                     /locus_tag="PXC99_000476"
     CDS             complement(18835..21321)
                     /gene="torA"
                     /locus_tag="PXC99_000476"
                     /EC_number="1.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
                     /protein_id="HDL5416962.1"
                     /translation="MKKQDNIDVSRRGFLKNSSLSLAAGAGLASGTTGVVGALASTSA
                     KAAEMKTVVTAAHWGPLGVVVENGKVVKSDSVFEISVPNELQHVVADQVHGETRVKYP
                     MVRKGYLEGNKDTTLRGRDEWVRVSWDKAFELVANEMKRVREAHGANAIFGGSYGWYS
                     SGALHASRTLLQRYLNVTGGFVGVKGDYSTGAAQVIMPHVLGTIEVYEQQTSWEVILE
                     SSDIVVLWSANPLNTLRIAWTSTDQQGIEYFKKLKESGKRIICIDPVKSESCEFLGAE
                     WVPVNTGTDVALMLGMAHTLVAEGKHDQAFLKKYTTGFEKFEEYLLGKTDNQPKDAKW
                     ASQICGVPEETIKKLATDFQSKRTMLMAGWGIQRQRHGEQGHWMLVTLAAMLGQIGLP
                     GGGFGLSYHYSNGGVPSATGGILGSITANPAVEAGAKTWLDETSKSSFPVARISDALL
                     NPGKTIDYNGTQITYPDIKIVYWAGGNPFTHHQDTNTLVKAWQKPDTIIVNECHWTPT
                     ARMSDIVLPATTSYERNDLTMSGDYSMMNIFPMKQVVEPQFEAKNDYDIFAELAKRAG
                     KEAEFTEGKSEMDWLQSFYQTAFEAARKNRVIMPKFEKFWQENKPLSFKASDKAKKWV
                     RYEEFRNDPLLNPLGTPSGKIEIFSEVIAKMNYDDCKGHPTWMEHEEYSGKTTAEEPL
                     ALVTPHSKWRLHSQLAYSSLRKQYAVNDREPVLIHTEDAAARGITSGDIVRIFNKRGQ
                     VLAGAVVTDGIIKGTLALHEGAWYDPLDLGTSEQPLCKNGNPNVLTRDEGTSKLAQGN
                     SPNTATVQVEKFTGQAPEVTVFKEPKYTQG"
     regulatory      complement(21340..21536)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            complement(21540..22655)
                     /locus_tag="PXC99_000477"
     CDS             complement(21540..22655)
                     /locus_tag="PXC99_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NapC/NirT family cytochrome c"
                     /protein_id="HDL5416963.1"
                     /translation="MAKMKKIAVFVGIMALGAAVLGGTQYAMKATSSTEFCVSCHSMT
                     HPQAEWEGSVHFSNRKGIRAECSDCHLPQDGLHYVKAKIIALKDVWHTVVTNKLPDQE
                     AYEAHRLEMAQRVWAEMKENDSMTCKSCHSFDAMVLSEQTEAAQKMHKLAQETNQTCI
                     DCHKGIAHFMPDVPVDNAAAMGELAKHGAEFSTNDKTLYTLAMTPVQLAQGGEIRLLP
                     YAELHQWTAEGEQVKATVNGWQQEGAESVVYMDLGKRIMVALLPDDAQSKVNVTKTVF
                     DNVTNSNWKEINFEITAPKNAVTANITALNHFGDNLNQTHCSGCHAPIGAEHYTANQW
                     IGVVNSMKDRTSMSADDVRAVTIYLQRNAKDVAGSSH"
     gene            complement(22797..24548)
                     /locus_tag="PXC99_000478"
     CDS             complement(22797..24548)
                     /locus_tag="PXC99_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5416964.1"
                     /translation="MDKRSRWSCLVNEQGEISEWEDKAGADYFAELPQICHYAQALLY
                     SDKNSLQFYYSSNHQWLKISLERHQSFVLTQAEHTDLPYGLSKREIELLTLISSGLSN
                     EDIANELCISKRTVDKHIENIFAKTHTKSRTLLAVFAITEHLICLPTPGKLTQSILAS
                     FNIEQLALQIIAKKQPLVTASTRHEPPIFTINHHHSRPIIIGVPYVEQGIGQIDTREL
                     LNGTQLAVETINQQGGIHGREVQVATAGFYVKDKASILQAYHHLFDQEVDAISTAYAC
                     YLPEVHELIATKGIPYLHIATHSGSNKLAQNLPNQRIENMFQVCASDVTYGLGISHFL
                     QYYRYHYAPWLQNKTVMVVTVSWQKVDIGIESLTLSLREQGWNVDYLELTQEQDNYAT
                     LMAQVHNLAPSIIVFASYFAEDIVQFYQTFIRNPTNAIIYSIYAPSAFLPHEKLCEGV
                     LWSTNSGLSENYLGRQFSQHYERFFGKSPTYSQASIAYDQANILANAWKQSVSPRHFK
                     AVSNAIRLQPHYGVNGTYYFNTDSQIGLTYAETHDLSISLPQLVYQIQQGQSRVIAPE
                     LFANAQFILPPWFSEKA"
     regulatory      24712..24868
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            24857..25882
                     /gene="moaA"
                     /locus_tag="PXC99_000479"
     CDS             24857..25882
                     /gene="moaA"
                     /locus_tag="PXC99_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HDL5416965.1"
                     /translation="MQSIIPIKNVGDDVVSGLVDRFQRQYTYLRLSITDVCNFRCNYC
                     LPDGYKPPSHKQTFLSVDEIQRVAKAFANLGTEKIRITGGEPTLRKDFLEIAHTISQT
                     PGIRKVALTTNGYRLERDVELWQQAGITDINVSVDSLDPRQFQLITGENKLQSILKGI
                     DKAFEIGYPKIKVNAVLMKQYTAPELDKFLTWIKDKPIQMRFIELMETGEMDSFFQAQ
                     HLSGQSVMTRLLQEGWQLQPKAMSDGPAKVLSHPDFKGEIGLIMPYEKNFCASCNRLR
                     VSALGKLHLCLFGEEGIDIRDLLASDEQQLQLETRLKSSLQGKREHHYLHIGDSGVRN
                     NLASIGG"
     gene            26383..26859
                     /gene="moaC"
                     /locus_tag="PXC99_000480"
     CDS             26383..26859
                     /gene="moaC"
                     /locus_tag="PXC99_000480"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HDL5416966.1"
                     /translation="MTTFTHINQNGEANMVDVSMKQETVRIARAEAFVRMNAETLQMI
                     VSGNHHKGDVFATARIAGIQAAKRTWELIPLCHPLLLSKVEVQLEALPESNQVRIESL
                     CKLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMIIENVRLLSKSGGKSGDFKVD"
     gene            26852..27097
                     /gene="moaD"
                     /locus_tag="PXC99_000481"
     CDS             26852..27097
                     /gene="moaD"
                     /locus_tag="PXC99_000481"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005631889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase sulfur carrier subunit"
                     /protein_id="HDL5416967.1"
                     /translation="MIKILFFAQVRELVATDRLDVEPTFTTAEALREHLSQQGKKWQL
                     ALEKGKLLVAINQTICPLETEIKDGDEVAFFPPVTGG"
     gene            27099..27554
                     /gene="moaE"
                     /locus_tag="PXC99_000482"
     CDS             27099..27554
                     /gene="moaE"
                     /locus_tag="PXC99_000482"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase catalytic subunit MoaE"
                     /protein_id="HDL5416968.1"
                     /translation="MFETLIEVQEAEFDQNRIYQWLSEQHSVGAATLFIGKVREMNLG
                     DNVSGLFLEHYPAMTKKALQEIVAQARTRWDLQRVAVIHRIGQLHTGDEIVLVGVSSA
                     HRGDAYHANEFIMDYLKTKAPFWKREQTQAGERWIEGRESDQQAAKKWQ"
     gene            27587..28069
                     /gene="ybeY"
                     /locus_tag="PXC99_000483"
     CDS             27587..28069
                     /gene="ybeY"
                     /locus_tag="PXC99_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HDL5416969.1"
                     /translation="MENLYIDLQIACENTENLPSEQQFYTWVQKALAVEAKTDDFPES
                     EITIRIVDEAESHELNLTYRGKDKPTNVLSFPFEAPEGIEMPLLGDLVICRQVMEKEA
                     EEQGISAESHWAHLAIHGTLHLLGYDHIEEDEAVEMESLETEIMQSLGYEDPYLSEKI
                     "
     gene            28147..30165
                     /locus_tag="PXC99_000484"
     CDS             28147..30165
                     /locus_tag="PXC99_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(Met) cytidine acetyltransferase"
                     /protein_id="HDL5416970.1"
                     /translation="MRTIAIITSPNNADFIQQGYFYIPENHQLKAIPFSNAKTILGQE
                     YPFAIYTMQAENGVNFNLDAFAILAGTIQENGTLFLLCPQWDNLENELDFDALRWNEN
                     QAIACPNFYQHFKQLVAKFGFEVRTNLPKLPATSGQIPSKIYQLTQEQQNILQNLPLD
                     PADIHLITAPRGRGKSTLAGRLAKALPAQNKVLITARSYSALPSFWRSAEQKIPFFAP
                     DNLIEQVKSKNISPNQWLFIDEAASLPLPILHTLCAYFEKVVLTTTTQNYEGTGRGFE
                     LKFPVMLDKPFKHWTLSQPLRWSENDPLEAFVTELLLLSEEKSPLFSKEGKGEIYSLR
                     SHYVPLLKQRSNAKRLWQKQLSKNISYSNKHLQEKIAFYHLLANAHYKTTPTDLRRLF
                     DGENQLLFSQQENEQLIGGIWAMQEGGLDEKLTQAIWLGERRPQGSLVAQYLCFQGNL
                     PQACKLHSIRISRIAVLPEKQNQGVGKRLISQFILQNSVEKRPLDFISVSFGLTTPLH
                     AFWQSCGFQLVQITPNKEASSGYQSAMMIYPISEQGKLFAQQATQAFARDFALQPFFT
                     EICEELQNFEQFRPLATHNLDERDWKNLTAFAHGKRTFSAAYVSLKRLYLSDKARFSE
                     LDIFERKGQKISKMEVENYRKLVLQNLNNKSFKIIYRFYYIFLCFCSC"
     gene            30230..31420
                     /locus_tag="PXC99_000485"
     CDS             30230..31420
                     /locus_tag="PXC99_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000462687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/tyrosine/aromatic aminotransferase"
                     /protein_id="HDL5416971.1"
                     /translation="MFSHIQAAPADSILGLGEAFKADSREGKINLGIGVYMTDEGKTP
                     IVKAVKEAEKRLLETENSKNYLTIDGVQAFNAATQALLFGEGAEVITSGRAKTAQSLG
                     GTGALRIAAEFIKRHTNAKNVWISTPTWPNHNGIFDAVGVNVKGYRYYNKETNGLDWE
                     NLIADLSQAEAGDVVLLHGCCHNPTGIDPTPAQWEQLAALSAEKGWLPLFDFAYQGFA
                     NGLEEDAYGLRAFVKNNRELLVASSFSKNFGLYNERVGAFTLIADNADDANRAFTQIK
                     SIIRVLYSNPSAHGASAVAVALADPDLKAQWIAELDEMRNRIKEMRSQLVQKLKEKGA
                     NKDFSFITEQNGMFSFSGLTPEQVDKLKDEFAIYAVRSGRINVAGITSKNIDALADAI
                     VKVL"
     gene            complement(31527..32828)
                     /gene="folC"
                     /locus_tag="PXC99_000486"
     CDS             complement(31527..32828)
                     /gene="folC"
                     /locus_tag="PXC99_000486"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HDL5416972.1"
                     /translation="MNTLSIPKATDSLETWLSYLEQAHSKPIDMGLDRIRKVATELDL
                     LKPAPYVITVAGTNGKGSTCRLLEVTLLKAGFRVGVYSSPHLIHYNERVRINGEVLPD
                     ADHVQAFAKINAKKTASLTYFEFSTLSAFELFKQNQLDIVILEVGLGGRLDATNIIDP
                     SLAVIISIDIDHVAFLGDNREDIGREKAGIFRENIPVVIGEPDCPHSIKQIADSLNCH
                     AFYRGKDWQFEIKNNLFHWYSEEKSFTDLPIPLIPIPNAGTALAVLMQLPFEIDEKII
                     RQALNEAQMTGRFQTLTDTDFTHFSQPKPAAKVIIDVGHNPHAARYLADKLRELKQPN
                     QKIYAVFSALEDKDLSGIVEPLANIIDEWHCAGLDCWRGQTGEAVLAKLVNVLPNSTA
                     CSYENVAQASRVLFETANENDIVLVFGSFHTVADFMLWLET"
     gene            complement(32838..33734)
                     /gene="accD"
                     /locus_tag="PXC99_000487"
     CDS             complement(32838..33734)
                     /gene="accD"
                     /locus_tag="PXC99_000487"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HDL5416973.1"
                     /translation="MSWLDRILGRDSSSSSNAKSKVPEGVWTKCTSCEQVLYSEELQR
                     NQQVCPKCDHHMRIDARTRLLNLLDKDSAVEIAADLEPEDVLKFKDLKKYKDRLTAAQ
                     KQTGEKDSFIVLAGTLHNMPVVTASFNFEFMGGSMGSVVGAKFVKAAEKALAEKIPFI
                     CFSASGGARMQEALFSLMQMAKTSAILAKMKEQGVPFISVLTDPTLGGVSASLAMLGD
                     VNIAEPKALIGFAGPRVIEQTVREKLPEGFQRAEFLLEHGAVDMIVHRKEMRDTLSRL
                     CAKLTNQPTPFKVAELVVENAE"
     gene            34043..34813
                     /gene="mazG"
                     /locus_tag="PXC99_000488"
                     /pseudo
     CDS             34043..34813
                     /gene="mazG"
                     /locus_tag="PXC99_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600778.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
BASE COUNT        10173 a         7520 c         6812 g        10308 t
ORIGIN      
        1 tgaaccaacc gtttttaaaa tggaactagg taaaacaaca gaaacagatg taaaagaaat
       61 gtataacctt gaaccggagg gtgttaataa atacagcaag ggtaatcagt attttattga
      121 tccaacgcaa ttagatttag aagatcttaa atcaacgctt attatctttg atgaaaaagg
      181 ggtattagtt tttgttggtt ccgagtttaa ttctatatct tctatcgagg attcaaaaaa
      241 ccggtataaa aaattcgatt atttgtacaa aatactagca agcaaatata aacttgtaaa
      301 aaaagaacgt ccatttgtag gcgatcaata tgctaaattt aaagacggta attcagaaat
      361 cgaattatca gaaccacata tgggtggttt taaaattaac ttgacttatg caaaaaaaga
      421 attcttagac gcattccaaa agatacagtc tgaagataaa aaacaaaaaa ctaaagatga
      481 agcatcatcg ttataattaa aattttttag tcatacatta cattagaact ttattgttcg
      541 tatgagtgta atgtgtggct aaaaaatttg aacaaacgaa gcgacagcgt tagcaaaaac
      601 ttaaaatgat gtacggattt aaaaatctgt tcgtttgctt gttttataag caaactaatt
      661 tcgcataatt attattatgt taaatagata gttaaaataa cacatttaat taaatctttt
      721 cgtgtttctc tcctccttta ttaaaaaaga aaacggtcag attggtaaaa tctataccta
      781 atatgaccgc ttgtgaatac aaaaaaatta cttcaattac ttcaactgtt taaaggcttg
      841 cagtaaatca gctttaatat cttcaacgtg ttctaaacca acggaaaaac gcagtaaatt
      901 attcgtaatg cctcgtgtaa tacgttctgc ttccggaata tccatatggg tttgtgttgc
      961 aggataagta ataaaacttt ctgcaccgcc taaactttcc gcaaaggtaa tcaatttaat
     1021 tgccttgaga aatttcgcta cccactcttc tttttgtaaa cggaaagata acataccact
     1081 tttgcctgaa tataacacgc tgtcaatttc aggttgctct gctaagaatt tagccagttc
     1141 ggtggcatta gactgatggc gttccattcg taatgccaag gttttcatac cacgcacggc
     1201 aaggtaagaa tcaaatggcg acagcactgc accggcacag ttttggaaat agaataaacg
     1261 ctcggtcaaa ttctgcccgt ttactttggt agcatcagaa tctttcgcaa caattaagcc
     1321 ggctaacaca tcattatgcc ccgaaagata cttggtcgca ctgtgaatca caatatcagc
     1381 tccgtgctca atcggacgga ataacgctgg ggttaagaac gtattatcaa cgatcaacat
     1441 taaattgtgt tttttcgcaa ttttagcaat ggcagcaacg tcgcactcct ccatcaatgg
     1501 atttgacggc gtttccacga aaatcgcctt agtattcggt gtaatagctg cttcaatcgc
     1561 tgctaaatcc gctgtattaa cataaaccgg ctttaatgtg ccgtgatttt tgtggctaaa
     1621 atcaaacaag cggtaagaac caccataaac atcgctggaa ataatccatt catcaggtgc
     1681 tttaaataat gacattacta gctgaatcgc tgccattcca gatgccatcg caaaaccggc
     1741 atcaccgcct tctaaatccg caatcccctg ctctaataca gctcgagttg ggtttttggt
     1801 acgggtgtaa tcccagccgg tagattcgcc taagccatca cgcccgtaag cagttgataa
     1861 gataatcggc attgccaccg cccctgtacg aggatcagtt ctgttaccga tttgcactaa
     1921 tgtggtttca atattattga attttgtcat tgttattatc cttcaattac agattattta
     1981 gatccaatac gtctgtcata tcaaacaagc cattttgttt gccatttaac cattttgcag
     2041 cacgcactgc gccattggca aacgtcattc gactagaggc tttatgtgcg atttcgacac
     2101 gttcgccttc atcagcgaac catacactat gctcccctac aacatcaccg gcacgaatag
     2161 tagcaaagcc gatttcatca cgtttgcgtt cgcctgtaat accgttacgt tcaaatacgc
     2221 catgagtttt caagtcacgc ccaagagttt tggcaatatg ttctcccatt gataaagccg
     2281 tacctgatgg tgcatcaact ttatggcgat ggtgtgcctc aatcacttca atatcacaat
     2341 aatcgcccat tacttttgct gctttttcga gcagtttaaa caccagattc accccaacgc
     2401 tgtagtttga ggcaaaaacg ataccgattt tttcactcgc tgctttgatt gcagctttac
     2461 ctgcatcatc aaaaccggtt gtgccaatca ccatttgttt atgatgagcc acacaaatat
     2521 ccaaatgttc tagcgtgcct tcagggcgag taaaatcaat tagtaaatca aaacctgcta
     2581 cattttgggc gacatcatca gaaatcacca cacctaatgt accaaccccg gctacttcac
     2641 cagcatcact acctactaat gatgaacctt tacgctcaaa agcagaccct aattctacgc
     2701 cttgtgcatt atggacggct tgaattaatt gacgccccat tcgcccaccg gcaccgacga
     2761 ttccaatttt taatgtcata tttgttcttc ctttttatat ttgtttttta caagcggtta
     2821 catttttaat taattttgca aatagctttc tgatggcaat ttaaaaggtg ggtgagaagt
     2881 aaaatcaaca atttgaataa agttttcacc tttcacataa tgtaaaatat actcagaagt
     2941 ataattacca aatccttgac tggtatcata ttctggaatg ccgatatgat aatgccataa
     3001 agaatatttt tgtgctttag ccaccttctc tgcccaataa ggatcattcg ttggcacatc
     3061 atcagaactt ttatttcgac cagctagatt ttccaatcca taaatttcaa cgtgttgttt
     3121 aaactgcagg attttgacta gatctttttc aggcaaatat tgcaattcgg ctgaaatttt
     3181 tgtaccaaat aaaactttaa tgcccatttg caacaccttt caaccagttt ctaaattcat
     3241 taacattcgt tatatcttta ggcacttcgt gaaaagtatc atttaaccgc tctttcattc
     3301 gctctaagtc aaaattaaat gcggttgctt gagagagttg ctgttcaatt ttgcgaatat
     3361 tggacttcat attatccaat atagccattg tccttgagcc atcagtaaaa tactgttggg
     3421 tatcgaaaat caccacctta ttttgattta ggtatttttt gaaatcgttt aaatcaattt
     3481 cagcccaaaa gtttggattt ttttcgatag tttcaataca ggcaattaat aattgatttg
     3541 ccattgtaat acgaaaattt aacaatgaga tttgctgctc tgttgcaggt ttatcatcag
     3601 ctgcgaaatc aaatgccgga taaatcactg caagcgtgtc agccatagat aagggtaaat
     3661 ttttcatcat ctctccttac ggaagaagtt gtcattatct actggattac ttaaaaaaac
     3721 aacttattca ttttatgcta tttttgcccc atcaccgcaa tatgtaccgt aatttcctca
     3781 cggtcgtggt agaggtgttt agcttgcatt ttgaaccaaa acccgtgttt cgttagctct
     3841 tcttccaaga aattgaggca tagttgcact tcttgataac gttttttcat cggcagtttt
     3901 aggttgaaaa tcgtttctcg acaccaaccg ttagtcagcc attttgcaat gagtttcgag
     3961 atacgaatcg gctgctctac catatcacaa accagccaat cgatttgttt acgcttaggc
     4021 ggttggaatt taaacccatc ttcagggcaa tgctcaattc ttccggtttc gtgtaaactt
     4081 gctgccattt tgccgtgatc gactgcatag acaaaaacac cacgtttgac taattgataa
     4141 gtccaaccac ccggacaagc cccaagatcg acccctacca tcgtatcatt aaagcgtttt
     4201 ttctcctctg cttgcggaat aaaagttaaa atcgcctctt ctaatttaag cgttgagcga
     4261 ctaggtgcct cagccgggaa ttttaaacgg ggaatcccca taaaaaacgg cgatttatta
     4321 tggttgtacg catagcccac atagcaagct cccggacgag taaataaaat atgcaagctc
     4381 acactaccct gcatattttc cgatttcccc aaccaacctt gttttttcaa tgccgaccgt
     4441 aatggcacag taaatttacg acagaaagtt aataattctt tcgcttcgtt ggtatccggt
     4501 gtttcgacaa atacatcaga actttggcga ggattaagtt cggcatattg ggctaaaatc
     4561 ggcgaaattc gatcattttc agacagattt tgcaacaaat ccccaacaac caacatttgg
     4621 cgaacaaaaa taagctgttc aaactttaac gcttgggcta atcgatctgc ttcccctgct
     4681 tgatagcact caaaaatcac atagccacta ttttctttaa ggttggcaaa gccaaaaatg
     4741 ccctgttgtg cagctttatc cgtgatttcg cctgctacct ctttttcaaa ccctgctcgg
     4801 caatataagg ctaatttatt gaacattagg cttttctcac actgatataa attaacgcaa
     4861 tccaaccaag cataaagcag agaccaccaa taggcgtaag ccaatgaata gtcggcacat
     4921 ttaacgccag taagtacagg ttgccactaa aaagcagaat gcctaacgcc caattgcttc
     4981 cgatgatgtt aaaggctttg gctctacaaa cgggtggatt ttgcccaaaa tttgcaattt
     5041 ggaataaacc taaagctaaa atggcaaggg tgtgaaacat ttgatattta atccccgtct
     5101 caatccagcc taaggcttta ggcgataatt gagccgataa tgcgtggctg gctatcgccc
     5161 caaatgccac agtaaataag ccgctgaatg cggcaattgc tacaaatttg tttttcataa
     5221 gttgaagata ggtatgatgt tagatggctt actatatcat attatcgaaa ccaacaagcg
     5281 gtgaaatttt gcaaaaaaat tacaaaaaat caccgtttgt atgcttaatg gttcaagata
     5341 atatccacat cttccgattt atcgtgaacc ccaaatctat ctactaaggt tttgctggcc
     5401 tcatttaatc cgataatttc tacctcaaca tcactttttc gatatttcaa cacaacttta
     5461 tctaacgctg aaactgccgt tacgtcccaa aagtgagcgt gggttaaatc aatgtggact
     5521 tttttcagtt ctgaacgggt aaaatcaaat tgtgcgataa aatcatcaga tgaggcaaaa
     5581 aatacttgcc cgataacatc ataacgcaat tcctctttct ctatagcact tgttttaacc
     5641 gccatataac gtccaatttt attcgcaaag aataatgccg agagcaacac gccggaaaat
     5701 acaccaaggg ctaagttatg tgtataaacc acaattgcaa cagtgactaa catcactaca
     5761 ttaaagccga ttgggtgcgt ttttagctct tttaaggaat gccaattaaa ggtgccgata
     5821 gagaccataa tcatcactgc aactaatgca gccatcggaa tcactctcaa aatatcgctc
     5881 aaaaagacca caaaaatcag taataatatt ggcaatgccc tgccctttac attcacggtt
     5941 tttatcgctg tctgtctctg tcatttcatc aacaatcgtt gccgtcatta aagattccaa
     6001 taaccctact gcggccaagc tgaaagaata aggcaaaata atccataagg tgtctaaatt
     6061 aagcggaata tcgggtaata aaaacaccgg taaggtatcg ggtaattgcc ccatatcccc
     6121 aacggtacga acatcaatgc cttgccataa tgtgaaaagt gttaaagcaa taatggtcac
     6181 taatggtgag ggaatgattt ttccaatcac cggtacataa ggaaaaagat aaatgatagc
     6241 aagccctgct accaccagtg cataagtatg ccaagttgta ttttgtaact caggtagttg
     6301 tgccataaaa attaaaatgg caagtgcatt aacaaaccca atcactacgg ctcgtgccac
     6361 aaaccgcata agcgagccga gttttaacca accggcaata atttgcaaca cgcctgttaa
     6421 taaggtggcc gctagcatat attgtaaacc gtgatccctc actaagcctg ctaataccag
     6481 agccattgca ccggttgctg cagaaatcat cgccggtctg ccgcccacaa aactgataat
     6541 tactgcaata caaaatgagg catataaacc aatttgtgga tcaacccctg caataattga
     6601 aaatgctatg gcttctggaa ttaacgccaa agccaccact aaaccagaga gaacatcacc
     6661 tcgtacattt gaaaaccatt gttgtttaat taccgtaggc gaaaattgct gaaataaagt
     6721 tgtcattatt acccttaaat aaaaagaaaa gccgagcaaa gtcggctaaa aatgaggcga
     6781 gagagtagca aattagtgaa aagtcgtcaa ataaacaagc ggtcttcttt cgctcttttt
     6841 ttgcaaaaaa tagtagaaaa atgaccgctt ggattaattg ctattcacta aaaaaagggg
     6901 ctttaaacac cgtcacttca ggtgcatctc ccacatattt ttccacttga accgtggtag
     6961 tgttcggtgc attgccctgc ccgagttttg atgaaccctc attacgggtt agcacattcg
     7021 ggttgccgtt tttgcatagt ggagtatctg ttttgcctaa atcttgcggg tcataccaac
     7081 caccttcgta taacgctact gtgccttgaa tgatgccatc agtcaccact gctcctgcca
     7141 acacctgccc tcgcttgtta aaaattcgca caatatcacc gcttgtaatg cctctgtcag
     7201 cggcatcttt tgtgtgaatt agcattggtt ctctgccgtt tacctcgtaa tattgacgta
     7261 atgaggagta agcaagctgg ctgtgtaaac ggtatttaat atgcggtgta actaatgcca
     7321 acggctcggc ttcgttggtt ttgcctgaat attcgtgatg ttcaaaccaa gtcgggtgtc
     7381 ctttacaatc ttcataattc atcttggcaa tggtttcgga gaaaatctca attttgcctg
     7441 atggcgttgc caatttgtgt ttaatcggat cagtacgata atcttgatag cgaacgaaag
     7501 tattattttg atgttctgcc tcaaagctca acactttatt ttccgcccaa aatgcctcga
     7561 aatccagcaa tggcgtatta gctttttccc ccgcctcaaa ggcaacttgg taaaattcct
     7621 taagccattc catttcgctt ttgccttcgg taaatgcttg ttctttaccg gctcgtttcg
     7681 ctaattcggc aaaaatatcg taatcattct tcgcctcaaa ttgcggttca accacctgtt
     7741 tcatcgggat aatatgtttt gctacataat caccggcaac ggtgagatcg tttcgctcgt
     7801 agctggtggt tgcgggcaat acaatatctg ccattcgagc ggtcggtgtc cagtaacatt
     7861 cattgacgat catcgtttcc ggctgttgcc acgctttcac taaatagttg gtatccgggt
     7921 ggtgagcaaa cggattaccc cccgcccaat agactaattt gatgttcggg taatgtaatg
     7981 tttgcccgtt gtaatcataa ggctgattcg gtttgagcaa cgcatcggca attcgagaca
     8041 ccgggaaaaa cggcatatcg gggttaggtt tacctgcatt gattgcccct aaacgaacac
     8101 cggaattaac atttagccca ttggtagaat aacgataatt taagccgaaa ccgccgcccg
     8161 gcaagccaat ttgcccgagc atagcggcaa gagtcactaa cgcccagtgg ctttgctccc
     8221 cgtgttgcag gcgttgcaag ccccagccgg acatcaacat tgtgcggtga gtaacaaaat
     8281 catttgctaa ggttttaatc acctcctccg gaatgtcaca aatttggctc gcccactctg
     8341 ctgttttagg taaattatct gcttttccta acacataatc agcaaattgc tcgaaaccaa
     8401 cagtatattt agttaagaag tcgtgatcgt gcttgttttc agtaataagg gtgtgggcga
     8461 tccctaaaat cagtgcaaca tccgtgccgg tattaatagg caaccactct gcctctaaaa
     8521 attgacaggt ctcgcttttc accgggtcga tacaaataat ccgtttaccg cttgctttta
     8581 atttggcgag ataatcaatc ccctccggtt cggcagaggt ccacgcaatg cgaagtgtat
     8641 tcagtggatt agacgaccaa attaccaata attctgtgct ttctacaatt gtgtgccaac
     8701 tggtttgttg agcatacacc tcaatattgc ctaatacata aggcataatc acttgcaccg
     8761 caccggtgga ataatcgcct ttagtattgg taaagccgcc tgtgacgttt aaataacgtt
     8821 gcaaaagcgt gcgagaggcg tgcagtgaac cactgctata ccagccgtaa gaaccgccga
     8881 aaatggattc gctgccatat tgctctctta cccgttggat ttcgccggaa accagctcaa
     8941 aggctttgtc ccaagagatt ctcacccact tatctcgccc tcgcaaagtg gtgtctttat
     9001 tcccttccaa gtagcctttc cgcaccatcg gatatttcac ccgaaccggg ctatagagct
     9061 gatccgccac cacatcttgc aattcgtttt ggtgattttt cgctaaactg ccctctgatt
     9121 tcaccacttt tccgttttcc accgttacat ttaatgcacc ccagtgggcg gcggtggtaa
     9181 tggtattttt cggtttatcc aaaaagacaa acttcccttt ttctaatgct gtgttcattt
     9241 aaattaatgc cttttctgtt acaaaattga gaggaattta ctggattaag ccaaaagttg
     9301 caaccacaag cggttgtttt tagccaaaaa tttgcaaaac aaaacccacc taaaaaggtg
     9361 ggcttcaagg aagttaaacg gcaacttgaa cgattacatt gtccgctttt ttcacataac
     9421 tattgatttg gtcaaagttc atatagcggt aaatatcgtc cttatctttc tgcaagttat
     9481 tcatatagtc taggtactct tgcggtgtcg gcaatttacc caataacgca gaaactgcgg
     9541 ctaattctgc tgaggctaaa tacacatttg ccccttgccc taaacggttc gggaagtttc
     9601 gggtagaggt agaaaccaca ttagcattat ttgccactcg ggcttggtta cccatacaga
     9661 gagaacagcc cggcatctct acccttgctc cgcttttgcc gtaaatgctg taatagccct
     9721 cttcggtcag caagcctgcg tccattttag tcggcggagc aatccataat ttagtcggca
     9781 attcgccctg tgcttggctt aacagtttac ctgccgcacg gaaatgcccg atattagtca
     9841 tacaagaacc aataaagact tcatcaattt tatcgccctg tacttgagaa agcaggcgag
     9901 catcgtcagg gtcattcggt acgcacacaa tcggctcttt gatttcatct aagttgatct
     9961 caatcactgc ggcatactcc gcattttcgt ctgcctctaa aagctccgga ttatccaacc
    10021 acgcttgcat attggcgata cggcgttcta gcgtgcgttt atcgtcatag ccttccgcaa
    10081 tcatccattt taaaagcgta atattagaat tcagatactc gataatcggc tctttgttga
    10141 gcttgatggt acaggctgca gcagagcgtt cagcagaagc atcagaaagc tcgaaggctt
    10201 gttcgatttt cagatcttcc aacccttcaa tttctaaaat tcgaccggag aaaatatttt
    10261 tcttaccttt tttctccacc gtcagcaagc cttgctgaat ggcataatac ggaatagcgt
    10321 gaaccagatc ccgtaaggta atgcccggtt gcattgtgcc ggaaaaacgc accaagaccg
    10381 attccggcat atctaacggc atcacccctg ttgccgcagc aaaggcaact aagcccgaac
    10441 cggcagggaa tgaaatcccg attgggaaac gggtgtggga atcgccgcct gtaccgacag
    10501 tatccggcaa taacatacgg tttagccaag agtgaatcac gccatcaccc gggcgaagtg
    10561 acacaccgcc acggttcata ataaaatcag gcaaagtgtg gtgggtaatt acgtccaccg
    10621 gtttcgggta agcggcagta tggcagaacg attgcatcac aagatctgcc gagaagccta
    10681 aacaggctaa atctttcagc tcatctcttg tcattggtcc tgtggtatct tgtgaaccga
    10741 cagacgtcat tcgaggctcg caatattgcc ccggtcgaac gccttctacg ccacaagctc
    10801 gccctaccat tttttgagca agggtgtagc ctttgttact ctctgaaacc gactgcggtt
    10861 taataaatac atcactttca ggcaagccaa gtgctactct ggctttatgg gtcaaaccac
    10921 gtccgataat cagcggaatt cgcccgcctg cacgcacttc atcaagcaat acttcggttt
    10981 ttagctcaaa ttcggctaag acttcatcgg agttgtgttt gcaaattttg cctgcataag
    11041 ggtaaatgtc gattacatcg cccatattca ggttggttac atccacttcg atcggtaaag
    11101 aaccggcatc ttctaatgtg ttaaagaaaa tcggggcaat tttaccgcct aacaccaccc
    11161 caccggcacg tttgtttgga atgtaaggaa tatcttcccc cataaaccaa agcacggagt
    11221 tggttgcgga tttacgagaa gagccggtgc cgactacatc accgacatag gctaacggga
    11281 aacctttttc ttttaatgct tccagttgct taatcgggcc ggtatgaccg ttttcatcgg
    11341 ggaaaatacc gtcacgttca tttttcagca ttgctaatgc gtgaagtgga atatcagggc
    11401 gagaccaagc gtcttgagcc ggggaaagat catcggtatt ggtttcgcct gtgactttaa
    11461 ataccgttac cgttaatttt tcggcaagtt tcgggcgaga ggtaaaccaa tcggcattcg
    11521 cccaagattc caatacttgt tgtgcaaacg gattaccctg atctgcccgt tcttttacat
    11581 cgtggaaatt atcaaacatc aataatgttt tagataaggc ttctaccgca atcggtgcaa
    11641 gctcagggtt atccaacgca gacaataagg tttcaatgtt ataaccacct tgcattgtgc
    11701 cgagtaattt cactgcgtga gcaggcgaaa tgagcggcga tgtggcaacc cctttggtaa
    11761 tatcggctaa aaaggcggct ttaacataag cggcttcatc aacacctgcc ggaatacgat
    11821 tggtaaaaag atccaataaa aagaccgctt gttcagccgg tgggtttttc aataattcaa
    11881 ccagttgagc cgtttgttcc gcagaaagtg gctgaggcac aacacccagt gccgcacgtt
    11941 catcaacctg ttgttgataa ttttctataa aattttccat catcattccc tctccaactt
    12001 tacatattgg caataatgtc ttgtgcaaat tctgaggttg agcgtagagt taccccctcc
    12061 agcatttccg caaaatcaaa ggtgacagtt ttattggcaa tggttttaga caccgctttt
    12121 accactaaat cagccgcttc aacccaacct aaatggcgta acatcatttc cccacttaaa
    12181 attaatgacc caggattgcc tttattttgc cctgcaattt taggggctgt gccgtgtgtg
    12241 gcttcaaaaa tagccgcttc aaacccaata ttcgctcccg gtgaaatacc gattccgcct
    12301 acttgtgcgg ctaaagcatc agaaatatag tcgccgttta ggttcagtgt agcaatcaca
    12361 tcatattcgg ttgggtgtaa caagatttct tgtaaaaagg catcggcaat gctgtctttt
    12421 ataatgattt cctcaccggt tttcggatta gtcaagctca tccaagggcc tttatcaatt
    12481 aattttgccc caaattcttc cgcaacttgg tagccccact ctttaaatgc tccttcggta
    12541 aatttcataa tgttaccttt atgcacaagc gtgagcgatt tacggttgtt atcaattaca
    12601 tattgcaatg cagcacgcac caagcgttgt gtgccttgct tagaaaccgg cttaattccg
    12661 ataccgcaat cttcggtaaa gcggattttt ttcacgccca tctcttgttg taaaaattcg
    12721 atcactttat tggcttcagg cgaaccggca acccattcta caccggcata aatatcttcc
    12781 gagttttcac ggaaaatcac catatccacc agctcagggt gtttaaccgg gcttggcgta
    12841 ccgtcataat aacgaattgg gcgtaagcag ttgtataaat ctaatccttg acgcatcgcc
    12901 acatttaaag aacgaatacc gccacccacc ggtgtcatta aaggaccttt aatcgccacg
    12961 tgatattggc ggataagctc taaggtttca tccggcaacc aagtgttctc accatataat
    13021 ttattcgcct tttcgcctgc gtaaatttcc atccaagcaa tttttcgctt gccttgatag
    13081 gctttttcta ccgccgcatc tagcactgct ttcattgcag gagtaacatc aacaccgatg
    13141 ccgtcacctt caataaatgg aataatcgga ttatccggaa cttgtaaaga accgtcttgg
    13201 ttcagttgaa tagtttcgcc ttgtggaatt tggacttgtg tttgcattga ttttaccccc
    13261 gtaatgacga aaaagtagtg acgaaaaatg aatgttgaca atcagccaac aatggattaa
    13321 ctataaacag taaatttcta aatgtaaata aagcaaaatg ggctgagaga gaatttgtga
    13381 tctaacgcac atttatgtaa ataaaatgta aaaaatcgtt gtgattcttt tggaaatcat
    13441 ctagtttatc ttataaatct caaataaata ggagtaagct atgtcaaaag caacattaac
    13501 actcgaaaca ggtgaaaaac ttgaactcaa tatgcaaaaa ggaaccttag ggtatcaaac
    13561 gattgatatt cagcctttct taaagcataa gttatttgct tatgatcccg gattggtttc
    13621 gaccgctgta tgccgatcca atatcactta tgttgatggc gatgaagggg ttttactcta
    13681 tcgaggctac ccgattgacc aattagccaa acattctgat tacttagaag tcggttatat
    13741 gctgttattc ggcgaacgcc ctaccaaaga agaatacaaa gacttcgttc aactcatcaa
    13801 aaaacacact cttgtacacg aacaactaac caaattcttc tccggtttcc gccgagattc
    13861 gcacccaatg gcggtgatgt gtggggtaag tggagctttg gctgccttct accacgacgc
    13921 cattgatgta aacaaccaag cccaccgtga attaaccgcc attcgtttgt tagccaaaat
    13981 cccaaccctt gcggcgatgt gttataaata ctctatcggt cagccgttta tgttcccaca
    14041 aaaccactta tcttacgccg gcaacttctt atatatgatg tttgccactc cttgtgaacc
    14101 gtacgaagtg aaccctgtgt tagagcgtgc gttagaccga attttcattt tacatgcaga
    14161 ccacgaacaa aacgcttcga cctcaaccgt gcgaaccgcc gcttcatcag gtgcaaaccc
    14221 atttgcttgc attgctgccg gtattgcctc tctctgggga cctgcacacg gaggagcaaa
    14281 tgaagcctgt atcaatatgt tgaaagaaat cggcactgtg gatcgcattc ctgaatttat
    14341 tgctcgagcc aaagataaaa atgacccgtt ccgcttaatg ggctttgggc atcgtgtcta
    14401 taaaaactac gaccctcgtg cgaaagtaat gcgtgaaacc tgccacgaag tgttaaaaga
    14461 actgaacatt gataacccac tatttgaagt ggcattggaa ttagaacgta ttgcgttaag
    14521 cgacccttat ttcattgagc ataaacttta tccaaacgta gatttctact ccggaatcgt
    14581 gctaaaagcc atcggtattc caacctcaat gtttaccgta atgtttgccc tagccagaac
    14641 cgttggctgg attgctcact ggaaagagat gtatctccaa ggcaatatca aaatcgttcg
    14701 tccacgtcaa atctacaccg gacatactaa acgtgatttt gagccaatgg ataaatcata
    14761 agattggcaa aaaatcgaaa aattttaacc gcttgtttcc acaagcggtt atattttgca
    14821 taaaatttgc aaatcaggct aatttattta gcagttgtgt tctaacatct tgaccatttt
    14881 catcgctttt tacagccata ataaataagc cttttccttg acttaatttc tcccaaagat
    14941 tgccaattaa ggctttttct ttagaatctt cattactttt taattgttcc cctttatatt
    15001 ccacaattaa aattcgacca tcaataagct ctacaataaa atcagggtaa aaattctgat
    15061 gagctaatgg taaagaaaac cctcttttta caggatttct taaccaatca tcagaaaaac
    15121 tcagttgctg ctgattaaaa tggtaagaaa cccgtttatc ttccacatca atttcaaaac
    15181 tttggctatt ttcttgtaat ctaaatccat caagtttggc tggataatcc aataaattcc
    15241 aactttggta atctaatagc acttgtgaat cagctaagtc gaattcgcct tgaatattca
    15301 tacacagttg aggtattact ttaaatattt cccctttttc ggcaggagaa gataatattt
    15361 caactctatt ctggtgaatt tgtaactgtt gctcaatttg ctcttttttc ttacctgttg
    15421 cagttcgaat caacgctttt tctaactttt cacttaaatt accttttact tgcactaaaa
    15481 tgtgaccttc ttgctcggta attttaagtt gagaacgttt tgcttcgctt aaatcagaca
    15541 tttcagggag ttgcgttaat gctaaaactg ttgtcggtgt atagaataaa tctccttcgt
    15601 ttccaatcca attttcttgt tgtgggatac gaagcatttc agctacttct aatgcttcaa
    15661 accccattcc aatcaattta tcttgtaaat tacgagccgt ttcgccgaac gacttagagg
    15721 aaagcggagc ataagcacga tttaaatctt caatttgacg gtgtttagca taaggcattc
    15781 gcaatactcg ccctaatagc tgctccgctt ccttgctaga ggaaacattt tgtactgagc
    15841 aaaaaatata agcaaaaggg caatcccacc cttcttttaa tgcctcaacc gtgatgatgt
    15901 aattgatctt gcattgtgga ttaaataaat cgatattatc taattcgtgt tgattaccta
    15961 tcacaatggc aatctcttct tcatcaattt ttaactcatc aattaaatac tgttttaaga
    16021 cttctactgt tactttgccg tttttcggct cagcttgaaa caataaatcg gacgaacgta
    16081 ctcgctctca tactgtgctt tttgtgctaa tgctcctcta ttgattacag ccccatctat
    16141 tgcttgttgc cagttgtgat gttcggtcag cacaataggc aatttgatca tctcttctgc
    16201 ttttagatgg cttgccgaaa cgtgatacaa cacattactt cctgcttttc tatctgtgtt
    16261 tggcgtagca gtaaattcta aaatagctga tggggaaagt tgagatagca catcaaaaga
    16321 gagtgaagtc cgagcattat gtgcttcatc aacaatgacc aaaggctgat aagctcgcaa
    16381 caaatttgca aaagaacact taattttgcc cgtttgtttg gaggttaaac cgttctcttg
    16441 tagatcagta gtggaaatct tttctaaatt tgcctgaata tggggtagta aacgctcaaa
    16501 atgagctgtt aatttttcat taaaagcata gatttttcgc ccatcttgat tttctacccg
    16561 aaaattttga atagtagaaa cgattacaat cgccttatta ccaaaatctt gtgggcgaag
    16621 taaatcaaaa tcttcagact caataaccat tacttctcgg ttaaaagttt tatcaagtac
    16681 tgcacggtaa gggtgttgcg gattttttaa tgcttctgta gtttgggttt taattgtacg
    16741 agaaggcact ggccacaagg taaccgggaa atcgcaatcc aaatactgct ttgcaatacg
    16801 agcaatacta tgcgaggcta acaacgtttt accgccacca gttggaattc gtacacaaac
    16861 ataaggcaca tcacgcaaat tactgtgttc acttgggatc ttgtaactat attcaggttg
    16921 aatttggcta aatgcggttt ttgcatcaga ttgcaaacaa gccgaaaaat agtggctgac
    16981 acggtttaat gcctcatttt ggtaattttt taatttcatt tttttctcct actattaacg
    17041 agacattaca tcatatggaa tctgtttaaa tgtaattttc ttttcagcta actgcacttc
    17101 tcctaaacgg cacgcttcgc catataccac aatatccatt ccctgttgaa taaattcagc
    17161 aaagtatggt aactccgcca ttaattttcg tgtcagaaca ttaccactct gcggacgttt
    17221 atcgcctaaa attccgttat ataacaaata gtaggctttg ccgttgaaag tgccgacaag
    17281 cggtgatttt tcgctgtttt tttgcaaagg gaaatgattt tctaaatacc aaatatgggc
    17341 ggctaaatcg tcaaaacgaa tgttcggatt aagtgaaccg aatgcgtcaa atacttcctc
    17401 gcctaactca caaaagcgaa acgatccacc accttgccaa tttactgctt ttgaaatacc
    17461 gccttgctca ccttcaatta cttttttcaa ccgtgggaca acatgggttt tagcatgttc
    17521 gccaatctca ataccgatat aacgacggtt cattttatga gcaactgctg cagttgtacc
    17581 tgagccaaga aagctatcga ggacgagatc atatggttca gtcgatgctt ctaatacaaa
    17641 ttagattaat ttttcaggtt taggataatc aaatgaatct tctgcaatat cctccccaaa
    17701 taattctaga tgttcactag cagagtcttc atttgttgcc atatcataat gagctctgct
    17761 aattaagtta tgaatttttt tcttttccgc acttcgctca aatactctcc ttggtcgaaa
    17821 gtctaaactt tttataatat agtaatcacc attttttaat tgctcatcaa tacttttttg
    17881 gctataccgc cattcacctt caatttctac cgtattttta ttccattgat cttcaataat
    17941 taattccgaa atcaacgtaa ttgaactcgt ttttttagaa aaaatggttg gcttatataa
    18001 tccatcacta tgttttttaa attttataga acgaggaggg aaaactaaaa tttctcttga
    18061 atttccagca ttgtataatg gataggtttc atcacctgag gtctcaaggt aagttaagtc
    18121 atttaattca tttaattcat ttttgttttt tgcatagcaa aataaattat ctgtaacttt
    18181 accaactttg cctaaaaaag atggtttcct tttcttttcc caaattaagt tagaaatgaa
    18241 attcttccgc ccaaaaattt catcaagcat aattttcaaa tagtgacttt cgttatcatc
    18301 aagagtgatc caaattgaac catcttcggc aagtaactct cgcagaattt caaggcgtgg
    18361 atacatcatt gaaagccaaa tggaatgctc taaattatca tcgtagtggg taaaggccga
    18421 ttttgtgtta tagggaggat caataaaaat acatttgact tgccccgcat aaaagggcaa
    18481 aagagatttt aaggctgata aattatcacc ctgaataatt aaattttgct tgactttaga
    18541 taaggtttca gcagaagctg agctgtcggc tgtcggctgt cggctgtcgg gcaatattat
    18601 gcgagaagtc cggcaactca cgcaataggc aatatggggt ttgttttgct tttttgacgg
    18661 cttcttcttt gccgtaccaa gtaagggttg tcataaaatg cacctgaaaa gtaaaagtgg
    18721 attattgtaa caagcggtca aaaaaataga aagttttaca aaaaattaag caaatttaac
    18781 cgcttgcaac atagaaaagg cacagtttta tactgtgcct ttggttatat gaaattagcc
    18841 ttgtgtgtat ttaggctctt taaatactgt tacttctggt gcttgtccgg tgaatttttc
    18901 aacctgtacc gtagcggtat ttggtgagtt accctgtgct aattttgatg tgccttcatc
    18961 acgggttagc acgttagggt tgccgttttt acatagcggt tgctcgctgg tgccgagatc
    19021 gagcggatcg taccaagctc cttcgtgcaa ggctaatgta cctttgataa tgccatctgt
    19081 caccaccgca ccggctaata cttgaccacg tttgttaaaa atacgtacaa tatcaccgct
    19141 tgtaatgcca cgagcggcgg catcttcagt atggatcaac accggctcac ggtcattaac
    19201 cgcatattgt ttgcgtaatg atgagtaagc taactggctg tgtaaacgcc atttagagtg
    19261 tggagtcacc aatgccaacg gttcttctgc ggtggtttta cccgagtatt cttcgtgttc
    19321 catccaagtt gggtgacctt tacagtcatc ataattcatt ttggcaatca cctcagagaa
    19381 aatctcaatt ttgccggacg gtgtgcctaa tggatttagg agtgggtcat tacgaaattc
    19441 ttcataacga acccattttt tcgctttgtc tgatgcttta aaagaaagtg gtttattctc
    19501 ttgccagaat ttctcgaatt tcggcataat cacacgattt ttgcgtgctg cctcaaatgc
    19561 agtttgatag aaactttgta gccaatccat ttcagatttg ccttcggtaa attccgcttc
    19621 tttgcctgca cgtttggcta gttcggcaaa aatatcgtag tcgttttttg cctcaaattg
    19681 cggttcgacc acctgtttca tcgggaaaat attcatcatt gaataatcgc ccgacatagt
    19741 taagtcatta cgctcatagc tggtggttgc cggcagcacg atgtcagaca tacgagccgt
    19801 tggtgtccaa tggcattcat tgacgataat agtatccggt ttttgccacg ctttcaccaa
    19861 agtgttggtg tcttggtggt gggtaaacgg attaccccct gcccaataga caattttgat
    19921 atcaggataa gtaatttgtg tgccattgta atcaatggtt ttgcccgggt tgagcagtgc
    19981 atcggaaata cgagccaccg ggaatgaaga ttttgatgtt tcatctaacc aggttttcgc
    20041 tccggcttct actgccggat ttgctgtgat agagcctaaa atgccccctg tggcactcgg
    20101 cacgccgccg tttgagtaat ggtagcttaa accgaaacca ccacccggta agccgatttg
    20161 acctaacatt gcagctaggg tgactaacat ccaatgccct tgttcaccgt gtcgttggcg
    20221 ttgaatcccc cagcctgcca ttaacattgt gcgtttagat tggaaatcag tcgctaattt
    20281 tttaatggtt tcttccggca caccacaaat ttgacttgcc cattttgcat ctttcggttg
    20341 attgtctgtt ttaccgagca gatattcttc aaacttctca aaaccggtgg tgtatttttt
    20401 aaggaatgct tgatcgtgtt tgccttcagc gactaaggta tgagccatac cgagcattaa
    20461 cgcaacatca gtgccggtgt ttaccggtac ccattctgca cctaaaaatt cgcaagattc
    20521 actttttacc gggtcaatac agataatgcg tttcccgctc tctttgagtt ttttgaagta
    20581 ttcaatacct tgttgatcgg tagaagtcca cgcaatgcgt agcgtattta acgggttagc
    20641 tgaccaaagc accacaatat ctgaactttc taaaatcact tcccaactag tttgctgttc
    20701 gtacacctcg attgtaccca agacgtgtgg cataatcact tgagcagcac cggtagaata
    20761 gtcgcctttt acaccaacaa atccgccggt aacatttaaa tagcgttgta acagtgtacg
    20821 ggaagcgtgt aatgccccag aactatacca accgtaagaa ccaccaaaaa tagcattcgc
    20881 cccgtgagcc tcacgaacac gtttcatttc attcgcaact aattcaaatg ccttatccca
    20941 cgaaactcgc acccattcat cacgcccacg tagagtagta tctttattac cttctaagta
    21001 gcctttacgc accattgggt attttactcg tgtttcaccg tgtacttggt ctgctaccac
    21061 gtgttgcaat tcatttggca cagaaatctc aaaaacagaa tcagatttca ccactttgcc
    21121 attttctacc actacaccta aaggccccca gtgggcggca gttactactg ttttcatctc
    21181 ggctgctttg gcactggtgg aagctaatgc ccccactaca ccggtagtac cactggctaa
    21241 acctgcaccg gcagctaagc ttaatgatga attttttaga aaaccgcgac gacttacgtc
    21301 aatattgtct tgttttttca taataaacct cgtttgaagt taagttaaaa atagacacct
    21361 ttctaaagtc gagtggataa accatttctc gtgtatccat tggtaaaagc accgacggta
    21421 atttttgcaa aatgttagga aaaaatgacc gcttgtagta ggtgctttac ggcttgctac
    21481 catatctctg ctctcagcag acacttaggc tcacaagctc ggtatcctct aagttgcaat
    21541 taatgggaac tgcctgctac atcttttgca ttacgttgga gatagatagt caccgcacgc
    21601 acatcatcag ccgacataga tgttctgtct ttcattgaat ttaccacccc aatccattga
    21661 tttgcggtgt aatgttctgc cccaatcggt gcatggcaac cgctacagtg tgtttggttt
    21721 aagttatcgc caaaatgatt tagtgcagta atattggcag tgactgcatt tttaggagca
    21781 gtaatttcaa aattgatttc tttccaattt gagttggtga cattatcaaa cactgttttt
    21841 gtgacattca ctttgctttg agcgtcatca ggtagaagag caaccataat acgcttgcct
    21901 aaatccatat acaccacaga ttccgcacct tcttgttgcc agccattaac cgttgcttta
    21961 acctgctcgc cttctgctgt ccattgatgt aattctgcat aaggtaacaa gcgaatttct
    22021 ccaccttgag cgagctgcac tggagtcatt gcgagcgtat aaagggtttt atcatttgtg
    22081 ctaaattccg caccgtgttt agctaattcg cccattgctg cggcattatc taccggcaca
    22141 tcaggcataa aatgggcaat tcctttatgg caatcaatac aggtttgatt agtttcttgg
    22201 gctagtttgt gcattttctg tgccgcttct gtttgttcag aaagtaccat cgcatcaaaa
    22261 ctatgacagc ttttacaggt catagaatcg ttttctttca tttctgccca aacacgttgt
    22321 gccatttcta gacgatgggc ttcataggct tcttgatcag gtaatttatt ggttacaacg
    22381 gtgtgccaaa catcttttaa tgcgatgatt ttagctttga cataatgcaa gccgtcttgt
    22441 ggtagatggc aatccgaaca ctcggctcga attcccttac ggttggaaaa atggacactg
    22501 ccttcccact ctgcctgtgg gtgagtcata gaatggcagc tcacacaaaa ttctgttgag
    22561 ctggtggctt tcattgcata ttgtgtgcca cctaataccg cagcacctaa tgccataata
    22621 ccgacaaata cagcaatttt tttcatctta gccataaatt accccactta atacactaaa
    22681 aattaaagac agaggcattg tattaactcc caagaggtat aaaaataagt aaaaatacct
    22741 attacctcga aagagtgaga ataatttgat ctaaggcaaa aatatgtagt gaaattttag
    22801 gctttttcag agaaccacgg cggtaagata aattgtgcat tggcaaacaa ctccggtgca
    22861 atcacacggc tctgcccttg ttggatttgg taaaccaact gtggcaagct gatagataag
    22921 tcgtgggttt ctgcgtaagt taatccaatt tggctatcgg tattaaaata gtaagtgccg
    22981 tttaccccat aatgtggctg taagcggatc gcattggaga cggctttaaa atgccgtggt
    23041 gaaacactct gtttccacgc atttgccaga atattcgctt ggtcataagc aatactggct
    23101 tgggaataag tgggcgattt gccgaaaaac cgttcgtaat gttggctaaa ctgtctgcct
    23161 aaataatttt cgcttaaccc actattggta ctccaaagaa cgccttcgca aagtttctcg
    23221 tgtggcaaaa acgccgaagg tgcataaata ctgtaaataa tggcatttgt tgggttgcga
    23281 atgaacgttt gataaaactg tacaatatct tctgcaaaat aagaggcaaa cacaataatg
    23341 gaaggtgcga gattatgcac ctgtgccatt aatgtggcat aattatcttg ctcttgggtg
    23401 agttccagat aatccacatt ccagccttgc tcccgcaaac ttagggttaa actttcaata
    23461 ccgatatcaa ctttttgcca actcaccgtt accaccatca ccgttttatt ctgaagccaa
    23521 ggggcataat ggtaacggta atattgcaga aagtgagata tacctaagcc ataggttaca
    23581 tcactggcgc aaacctgaaa catattttca attcgttgat tcggtaaatt ttgggcaagt
    23641 ttatttgagc cactatgggt tgcaatatgc aaataaggaa tgcctttagt tgcaattaat
    23701 tcgtgtactt ccggcaagta gcaggcataa gcggtggaaa tcgcatcaac ttcttgatca
    23761 aataaatgat ggtatgcctg aagaatactt gctttatctt taacataaaa cccagccgtt
    23821 gcaacctgta cttctctgcc gtgaatacca ccttgttgat tgatggtctc aaccgcaagt
    23881 tgagtgccgt taagtagctc tcgggtatcg atttgcccaa taccctgttc aacataaggc
    23941 acgccaataa taatcggacg actatgatgg tggtttatcg taaaaatcgg tggttcgtgt
    24001 cgagttgaag ccgttacaag cggttgtttt ttcgcgataa tttgcaatgc cagttgttca
    24061 atgttaaagc tggcaagaat ggattgggtt agttttcccg gtgtgggtaa acagattaaa
    24121 tgttcggtaa tggcaaaaac agctaataag gttcggcttt tggtatgtgt tttcgcaaaa
    24181 atattttcga tatgtttatc aacagtccgt ttgctgatac aaagctcatt ggcgatatcc
    24241 tcattgctca aaccactgct aattagagtg agaagctcaa tctccctttt actcagtcca
    24301 taaggcaaat cggtatgctc tgcttgagtc aatacaaacg attggtggcg ttctaggctg
    24361 atcttaagcc attgatggtt tgaactatag taaaactgca agctattttt atctgaatag
    24421 agcaatgcct gtgcatagtg gcaaatttgc ggtaattcag caaaatagtc tgcccctgct
    24481 ttgtcttccc attctgatat ttcgccttgt tcatttacta aacaagacca tcggctacgt
    24541 ttatccattc tcacctcgaa ctaaaaacgt tagctaaaat agcaaaatta tctcggcatt
    24601 aatatgatat aaatcaaact aagcaacggt tgccagattt ttataggtag agcatacaat
    24661 ttaaattata cctcttgcct aattaggttt ctcaccataa aatgaaaacc aatttattga
    24721 agactccgag cattatttcc taactctaaa aattaaagac aaatttttga tatggaattt
    24781 atgccagtaa cagcataaag ctgttcaaag gataacttag aaatgggttg tcctctcgtg
    24841 tttagaaagg tgtcaaatgc agtctattat cccaattaaa aacgtgggtg atgatgtcgt
    24901 ttcaggttta gttgatcgct ttcagcgtca atatacttat ttgcgactat ccattactga
    24961 tgtttgtaac ttccgttgta attattgctt gcctgatggc tataagccgc cttcacataa
    25021 gcaaactttt cttagcgttg atgaaatcca gcgggtggct aaagcctttg ccaatttagg
    25081 gacggaaaaa atccgtatca ccggtggtga gccaacttta cgcaaagatt tcctcgaaat
    25141 cgctcacact atttcacaaa cacccggtat ccgtaaagtt gccctaacca ccaacggcta
    25201 tcgcctagag cgtgatgttg aactgtggca acaagccggt attaccgata ttaatgtgag
    25261 tgttgatagc cttgacccac gccaatttca actgattacc ggcgagaaca agttgcaatc
    25321 tattttaaag ggtattgata aagcctttga aattggctac ccaaaaatta aagtcaatgc
    25381 ggtgctaatg aagcaatata ccgcccctga attggataaa ttcctcactt ggatcaaaga
    25441 caagccgatt caaatgcggt ttattgagct gatggaaacc ggtgaaatgg atagtttctt
    25501 ccaagctcaa catctttctg gtcaatcggt gatgacccgc ttattacaag aaggctggca
    25561 attacaaccc aaagcgatgt ctgacggccc ggcaaaagtg ctttctcacc ctgattttaa
    25621 aggcgaaatc ggcttaatta tgccctacga gaaaaatttc tgtgcctctt gcaaccgctt
    25681 gcgtgtttcc gcacttggta aactgcatct ttgcttattt ggtgaagaag ggattgatat
    25741 tcgtgattta ctggcaagcg atgagcaaca gttacagctt gaaacccgcc taaaatcttc
    25801 cttacaaggc aagcgagaac accactattt gcatattggg gatagtgggg ttaggaataa
    25861 tttggcgagt atcggtggtt aaacaaccac cgagcgtgtt ttttctgtta cttttctttg
    25921 cttcgccaaa gaaaagtaac caaaagaaag gcgaccccag attttcctta atccttcgct
    25981 tgttgctaac ttttgggacg aacttttcaa actcgccaac tgcgttggct caaacacgaa
    26041 aagttgtcct caaaagttta cgcaatcgct acggcggaaa ataggggcaa gcggtacatt
    26101 atttaagatt tttgcaagtt tttatttaaa aataaccgct tgtaatgttc cagcttctcc
    26161 cttctgaacc gcctgagcga ctttgaattt ataggaaaaa tttagtgttt gagccaacga
    26221 agttggcgag ttttaaattt ttccgttaaa caaattcaaa taaaatgaag atagcggtga
    26281 agtagggtgt gctttctttg gttactttct ttgcacaagc aaagaaagta acaagaagac
    26341 gctcaatatt aattttacaa tcaaatttaa agagacaaac aaatgacaac cttcacccac
    26401 atcaaccaaa acggcgaagc caatatggtt gatgtttcaa tgaaacaaga aaccgtacgc
    26461 attgcccgag cggaggcatt tgtgcgaatg aatgccgaaa cattacaaat gatcgtcagt
    26521 ggtaatcacc acaaaggcga tgtattcgca accgctcgaa ttgccggtat tcaggcggcg
    26581 aagagaactt gggagctgat tccactctgc cacccgttat tgctttctaa agtggaagtt
    26641 caactggagg cgttgccgga aagcaaccaa gtgcgaattg aatcactctg taaactaacc
    26701 ggcaaaaccg gcgtggaaat ggaggcatta accgcagcta gtgttgctgc tctgactatt
    26761 tacgatatgt gtaaagccgt gcaaaaagat atgattattg aaaatgtaag attacttagt
    26821 aaaagtggcg gaaaatcagg agatttcaag gttgattaag atactttttt tcgcccaagt
    26881 gcgtgaactt gtggcaacgg atagactaga tgttgagcct acttttacca ctgccgaagc
    26941 gttgcgtgaa cacttaagcc aacagggtaa aaaatggcaa cttgcccttg aaaaaggcaa
    27001 actgctggtt gcaattaatc aaacgatctg cccgcttgaa acggagatca aagacggcga
    27061 tgaagtggca ttcttcccac cggtaaccgg gggctaaaat gtttgaaacc ctgattgaag
    27121 tacaagaagc tgaatttgac caaaaccgca tttaccaatg gctcagtgaa caacatagcg
    27181 tgggggcagc cactctattc atcggtaaag tacgtgaaat gaatttgggc gataatgttt
    27241 ccggtttgtt tcttgaacac tatccggcaa tgactaaaaa agcattgcaa gaaattgtgg
    27301 ctcaagctcg cactcgttgg gatttacaac gcgttgcggt gattcaccgc attgggcaac
    27361 tgcataccgg tgatgaaatc gtattagtcg gtgtgagttc tgctcatcga ggtgatgcct
    27421 accacgccaa cgagtttatt atggattatc tcaaaaccaa agccccattt tggaaacgag
    27481 aacaaaccca agccggtgaa cgttggattg aagggcgtga gagtgaccaa caagccgcca
    27541 aaaaatggca atagaaaaaa tggcaataat ttgcaaaagg taacgaatgg aaaatttata
    27601 tattgatttg cagatcgcct gcgaaaatac cgaaaactta ccaagtgaac aacaatttta
    27661 tacttgggta caaaaagccc tcgcagttga ggcaaaaacc gatgatttcc ctgagagtga
    27721 gatcaccatt cggattgtcg atgaagcaga aagccacgag ctaaatctga cttatcgtgg
    27781 taaagacaag ccaaccaatg tgctatcttt cccgtttgag gcccccgaag gaatcgaaat
    27841 gccactattg ggtgatttag tcatctgtcg tcaagtaatg gaaaaagagg cggaagaaca
    27901 aggtatttca gccgaatccc attgggctca tttggcgatt cacggcacac ttcatctgct
    27961 cggctacgac catattgagg aagatgaagc agtggaaatg gaaagcctcg aaaccgaaat
    28021 tatgcaaagt ttagggtatg aagatccgta tctttcagaa aaaatatagt cttgtagggg
    28081 agggtcctgt gccctccagt actccattat aatcggacag gcacaggagc tgttcctaca
    28141 agttatatga gaacgatcgc aatcataaca tctcctaaca atgccgactt tattcaacaa
    28201 ggctattttt acattcccga aaatcatcag cttaaagcta tccccttttc caatgccaaa
    28261 acgattttag gacaagaata cccttttgcc atttatacta tgcaagcaga aaatggggtg
    28321 aattttaact tagatgcttt tgcaatactt gccggcacta ttcaagaaaa cggtacttta
    28381 tttttgcttt gtcctcagtg ggataatttg gaaaatgaat tagatttcga tgcgttacgt
    28441 tggaacgaaa atcaggctat tgcctgcccg aatttctatc aacattttaa acaattagtc
    28501 gctaaatttg gttttgaagt cagaactaat ttgccaaaat taccggctac aagcggtcaa
    28561 attccttcaa aaatttacca attaacgcaa gaacagcaaa atattttgca aaatctaccg
    28621 cttgatcctg ccgatattca tttgattacc gcccctcgtg ggcggggcaa atctaccctt
    28681 gcagggcgac ttgcaaaagc gttacccgca caaaataagg tattaattac cgcacggtct
    28741 tattctgcat tgcccagttt ttggcgttcg gcagagcaaa aaatcccttt tttcgcacct
    28801 gacaatttaa tcgagcaagt taaaagtaaa aacatttcac ctaaccaatg gctctttatt
    28861 gatgaggcag ctagcctacc cttgccgata ctccacacac tttgtgccta ttttgaaaaa
    28921 gtggttttaa ccacaacaac ccaaaattac gaaggcacgg ggcgaggatt tgagctgaaa
    28981 ttcccggtaa tgttggataa accgtttaaa cattggacgt tatctcaacc attgcggtgg
    29041 agcgaaaatg atcctctcga agcatttgtg actgagttgc tattactttc cgaagaaaaa
    29101 tctcccctct ttagcaaaga ggggaagggg gagatttatt cgcttcgctc acactatgtg
    29161 ccgttgctaa agcaacgttc aaacgcaaag cgtttgtggc agaagcaatt atcgaagaat
    29221 ataagttatt cgaataagca tttacaggaa aaaatcgctt tctaccactt actcgccaac
    29281 gcccattaca aaaccactcc aactgactta cgccgtttat ttgatggcga aaatcagctt
    29341 ttgttttcac aacaggaaaa cgagcaactt atcggcggaa tttgggcaat gcaagagggt
    29401 ggtttagatg aaaaattaac ccaagccatt tggctagggg aacgccgtcc gcaaggcagt
    29461 ctagtggctc aatatctctg ttttcaaggg aatttaccgc aggcttgcaa attgcattcc
    29521 attcgcattt ctcggattgc ggtattgcct gaaaagcaaa atcaaggcgt tggcaagcgg
    29581 ttgatttctc agtttatttt gcaaaattcg gtagaaaaac gaccgcttga ttttatctct
    29641 gtgagctttg ggctaactac tccactccac gcattttggc aatcttgtgg tttccaactt
    29701 gtgcaaatca caccgaataa agaggcaagc agtggttatc aaagtgcaat gatgatttac
    29761 ccgatttcgg agcaaggaaa gttatttgca cagcaggcaa cccaagcctt tgccagagat
    29821 ttcgcccttc agccattttt cacggaaatt tgtgaggaat tgcaaaattt cgaacaattt
    29881 cgaccgcttg ccacacacaa tttagatgaa cgtgattgga aaaatttaac cgcgtttgct
    29941 catggcaagc ggacgttttc agcggcgtat gtgagtttaa aacggcttta tttatcggat
    30001 aaagcacgct tttcagagct ggatattttt gaacgaaaag ggcaaaaaat ctccaaaatg
    30061 gaggtggaaa attatcgaaa actcgttttg caaaacttaa acaataaatc atttaaaata
    30121 atttataggt tttattacat ttttttgtgt ttttgctctt gctaaatctg caatttaatc
    30181 gtataaattc actgtttatt tttcattttg atgaggaact ccaatgtcaa tgtttagtca
    30241 cattcaagct gctccggcag actcaatttt aggcttaggt gaagcgttta aagcagatag
    30301 ccgtgaaggt aaaatcaacc ttggtatcgg tgtttatatg accgatgaag gcaaaacccc
    30361 gattgtcaaa gcggtaaaag aagcagaaaa acgtttatta gagacggaaa acagtaaaaa
    30421 ttatttaacc attgacggtg ttcaagcatt caatgcggca acgcaagcgt tattatttgg
    30481 cgaaggggct gaagtgatta cctcaggtcg tgctaaaact gcacagagtt taggtgggac
    30541 aggggcatta cgcattgcgg cggaatttat caaacgtcat acgaatgcga aaaatgtatg
    30601 gatttcaacc ccgacttggc caaaccataa cggcattttt gatgcagtag gcgtgaatgt
    30661 aaaaggctat cgctactaca ataaagagac taacggttta gattgggaaa atttaattgc
    30721 cgatttaagc caagcggaag ccggagatgt ggtgttattg cacggttgct gccacaaccc
    30781 gaccggaatt gacccaacac ctgcacaatg ggaacagtta gcagcattat ctgccgaaaa
    30841 aggctggttg ccgttatttg actttgctta tcaaggcttt gcaaacggtt tagaggaaga
    30901 tgcttacggt ttacgagctt ttgtgaaaaa taaccgtgaa ttgttggtcg caagctcatt
    30961 ctcgaaaaac tttgggttat ataacgagcg tgtcggtgca tttaccctaa ttgcagataa
    31021 tgctgatgat gccaaccgtg ctttcactca aatcaaatcg attattcgtg tactttactc
    31081 taacccatct gctcacggtg caagtgcagt agcagttgca ttggctgatc ctgaccttaa
    31141 agcacaatgg attgcggaat tagatgaaat gcgtaaccgt attaaagaaa tgcgtagcca
    31201 attagtgcag aaattaaaag aaaaaggggc aaacaaagac ttctctttca ttactgagca
    31261 aaatggtatg ttctcattca gtggcttaac accggagcaa gtggataagt taaaagatga
    31321 gtttgcaatt tatgctgtgc gttcaggcag aatcaatgta gcaggcatta ccagcaaaaa
    31381 cattgatgct cttgccgatg cgattgtgaa agtgctttaa ttaaacctta aagatatata
    31441 gaggcataag cctgagtgct tgtgcctctt ttttatcttt taggtacaag tgtggacact
    31501 tgcaccaacg ttgattattc gtagaactag gtttccaacc aaagcataaa atctgctacc
    31561 gtatgaaatg agccgaacac cagcacaata tcattttcgt tggctgtttc aaacaatact
    31621 cggcttgcct gtgccacatt ttcatagcta caagcggttg aatttggcaa aacgtttacc
    31681 aatttcgcta acaccgcctc gcctgtttgt ccacgccaac aatctagccc tgcacaatgc
    31741 cattcatcaa taatattagc taatggctcg acaataccgg ataaatcctt atcttctaac
    31801 gcactaaaca ccgcatagat tttttgattt ggttgcttta actcccgcag tttgtcagct
    31861 aaataacgtg ctgcgtgtgg gttatgccct acatcaataa ttacttttgc agccggttta
    31921 ggttgagaaa aatgagtaaa atcggtatcc gtcagggttt gaaaacgccc tgtcatttga
    31981 gcttcattta aggcttgtcg aataatcttt tcatcaattt caaatggcag ttgcattaat
    32041 actgctaatg cggtgccggc gtttggaatc ggaataagcg ggattggtaa atcggtaaag
    32101 gatttttctt cagaatacca atgaaacaga ttattcttaa tttcaaactg ccagtcttta
    32161 ccccggtaaa aagcgtgaca atttaacgaa tcagcaatct gtttaatcga atgagggcaa
    32221 tcaggctcgc cgatgacaac cggaatattt tcacggaaaa tgccggcttt ctcacgcccg
    32281 atgtcttcac ggttatcgcc taaaaatgca acgtggtcga tatcaatcga gataatcacg
    32341 gcaaggcttg gatcaataat attagtggca tctaatcgcc cacctaatcc gacttctaaa
    32401 atcacaatat cgagctgatt ttgtttgaat agctcaaatg cagacagcgt actaaactca
    32461 aaataagtga gtgaagcggt cttttttgca ttaatttttg caaatgcttg gacgtggtcg
    32521 gcatcaggta atacttcgcc gttaattcgc acccgttcat tatagtgaat taagtgcggt
    32581 gaagagtaaa caccaacccg aaatccggct tttaataagg taacttctaa caaacggcag
    32641 gtcgaaccct tgccgttagt accggcaacg gtaatcacat aaggggcagg cttgagtaaa
    32701 tccagctctg ttgcgacctt acgaatacga tctaagccca tatcaatcgg tttagaatgg
    32761 gcttgttcta aataggaaag ccacgtttcc aaagaatccg tggctttagg tatgcttaat
    32821 gtattcattc agatatttta ttctgcgttt tctacaacca attccgccac tttaaacggc
    32881 gttggttgat tggttaattt tgcacaaaga cgggaaaggg tatcacgcat ctctttacga
    32941 tgcacgatca tatcaactgc cccgtgttct aataagaact cggcacgttg gaaaccttcc
    33001 ggcagttttt cacgtacggt ttgctcaatt acacgaggac cagcaaagcc gattagggct
    33061 tttggctcag caatattcac atcgcccagc attgccaaac ttgcggaaac cccacctaaa
    33121 gttgggtcgg ttaatacaga aataaacggt acgccctgct ctttcatttt ggctaaaatc
    33181 gcactggttt ttgccatttg cattaaagag aataacgcct cttgcatacg agccccgccc
    33241 gatgccgaaa aacagataaa cggaattttt tcagctaaag ctttttccgc agctttcaca
    33301 aattttgcac ctactacaga ccccattgaa ccgcccataa actcaaagtt aaaggaggcc
    33361 gtaaccaccg gcatattatg caatgtaccg gcaagcacga taaaagaatc tttctcaccg
    33421 gtttgttttt gcgcggcagt taaacgatct ttatatttct ttaaatcttt aaatttcaac
    33481 acatcttccg gctctaagtc ggcagcgatt tcgaccgcag aatctttatc taacaaattc
    33541 aataaacggg tgcgggcatc aatacgcata tgatgatcgc attttggaca aacctgttgg
    33601 ttgcgttgta attcttcgct atagagaact tgttcacaac ttgtgcattt tgtccataca
    33661 ccttccggca cttttgattt tgcattgctt gatgatgaag agtctctacc taaaattctg
    33721 tctaaccagc tcattattat tccttttgga ttgagttgtt gggttcacta aatggttgct
    33781 attaaagcat aatttatcgg tttttgatat gttttcttga catatcagat cactaactat
    33841 gtgtataagt tcgataaaaa aacgcaatca gaagaatgat taacatcacc acaatttgaa
    33901 ttaagcgttt tttggttaat ttttccgctg ccattgctct gctcatactt aataaatttc
    33961 cgcattataa gcgaaaaagc acgggctatg tagaatttgc aaaattttga tcaaaaataa
    34021 ccgcttgtaa aaaggaaata ctatggcaac cattgaacaa tttcttgagg ttgtaaacca
    34081 acttcgtcac cctgaacacg gctgcccgtg ggatctcaaa cagaattttg acacgatgtt
    34141 ccccacttat tggaagaaac ctacgaagta gcggaagcga ttcacaccca agatcgcact
    34201 gccttgcgtg aagagttagg cgatttatta ctgcaagtgg tatttttaag ccaattagcg
    34261 aaagaggaag gcagtttcac ttttgatgat gtagtaacgg atattcacga taaactgatt
    34321 taccgccacc ctcacgtttt tggtgatgtg aaagctacta acagcgaaga ggccttacaa
    34381 agttgggaag cacaaaaagc gaatgatgca aaacaccgta gccaagattc tatttttaga
    34441 tgatttacct tttgctttgc ctgctcttac ccgtgcaaat aagctacaaa aacggtgtgc
    34501 aaaagttgga ttcgattggg ataaccctca cgatgtgctg gcaaaagtcg aagaagaact
    34561 cgatgaagtc aaagcagaaa tcgcacaata tccggctcgc tccatcgagc ttgctgaaga
    34621 attaggcgat ctcttgtttg cgattgtaaa tttatgccgc cattatcata ccgatgccga
    34681 ggaaatttta cgcaatgcaa atctaaaatt tgaacatcgc tttcgaaaag ttgaaaaatc
    34741 tgtgaaaaaa tcgggaagaa ctgtaaaaga atgtaaatta gaagaactag atgtaatttg
    34801 gcacaaaata aaa
//
LOCUS       DANLVT010000012        32592 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.012, whole genome shotgun sequence.
ACCESSION   DANLVT010000012 DANLVT010000000
VERSION     DANLVT010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 32592)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32592)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32592
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.012"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(4..489)
                     /locus_tag="PXC99_000489"
     CDS             complement(4..489)
                     /locus_tag="PXC99_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416974.1"
                     /translation="MIQNDPRDAIILSLLANAVYGGHNNSQISYQETEEVNLYARLRQ
                     VEGDVREIKSNYLTKEAFYKAGGSTLIALVVTAVIALWTVYSHLETKVEARFSKIDDK
                     FVQVETNIKNLDIRLTKVESRLDNVEQRLDNVEQRLGNMEKKIDGVDNKLDLLLQQFK
                     R"
     gene            complement(494..874)
                     /locus_tag="PXC99_000490"
     CDS             complement(494..874)
                     /locus_tag="PXC99_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416975.1"
                     /translation="MNNKRIKPEQFADFITQRTGRNLTCPICNSQEHYLHDGYDTFTE
                     LCGEKIIGVPTIPYRIEPSPDEVMKFAAPEFHSLHFNEREGTKYWLDQKARTAVIVTC
                     VCCNNMLFFDRERILEWIKGSQNE"
     gene            complement(925..1584)
                     /locus_tag="PXC99_000491"
     CDS             complement(925..1584)
                     /locus_tag="PXC99_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HDL5416976.1"
                     /translation="MTTLGSRIKAYREQLGISQYEVAERCTSIDNRDKNNKWGQSRIA
                     NYERNNRTPDLDDIEILSKVLGVSPETLAFDTNVQLARPTKSNSYPLISNIQAGLWTE
                     AFDFKDSEGYDYIDTEIDAGPDAFFLRISGMSMEPKFSEGDLVLIDIRKRPHPGDYVA
                     AVNGTGEATLKRYRELGEWSESGNPHFELIPLNPDFPTLSSMKQDIRIIGVAVEHRSY
                     L"
     gene            1714..1920
                     /locus_tag="PXC99_000492"
     CDS             1714..1920
                     /locus_tag="PXC99_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005656653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5416977.1"
                     /translation="MNKIAEIRNQIGISQAQLAVQIGWGQPRIANYETGNRTPSIYVA
                     QKIVEGLNELGANVRIDDVFPVGN"
     gene            1941..2201
                     /locus_tag="PXC99_000493"
     CDS             1941..2201
                     /locus_tag="PXC99_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416978.1"
                     /translation="MPRNELTKNARAIADLIHRKSATVTHKKLARAIGLSESQFSRTF
                     ADNVEMVAVIIDYLSIELADKDELLELKEKRYKRINLEEATT"
     gene            2365..2535
                     /locus_tag="PXC99_000494"
     CDS             2365..2535
                     /locus_tag="PXC99_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416979.1"
                     /translation="MKNQRNDTQKSSLWQEFEYRKRLKNLIESGLSVAEIETRSQQIY
                     EELKSECTTEAN"
     gene            2510..3379
                     /locus_tag="PXC99_000495"
     CDS             2510..3379
                     /locus_tag="PXC99_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HDL5416980.1"
                     /translation="MNAQPKQINPILKLHPKQSEAKKVSVDDGYTQIPNELLKAILRS
                     GVLGWKGSYLLATVLKTLSWHKESDWFTHSQVCEMMNIEPTKYHINQLSAARKELIRE
                     NILFEDGKETGVNLSVFEWKMVYPEKVGSSRNNRELIPEKVGNGYPEKVGNTKETITK
                     EKINNEFTNVNSVQQPETSLPKKTKSEPVDYQGVMEEFNRAVEDTPIPQIRAMSDERK
                     RSVHALAKILRKEFGGYTRQHFADYFNDFVRQASSRKDRFYFGGLDGSAWVANFGYII
                     RSKTFYKTWEDSL"
     gene            3376..4737
                     /locus_tag="PXC99_000496"
     CDS             3376..4737
                     /locus_tag="PXC99_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase"
                     /protein_id="HDL5416981.1"
                     /translation="MSQNLKNITYEVEYLLVGALLKSGLNSKARDVLSWLEPEMFATF
                     QLGVIYEAIRKQALKDNVIDMLLLNTDYGQDFATLAEIMKNTISGANLDGYAEKVRQY
                     HQRREAQRVFLDVAGELQNARDEQLDAITSTGLAHLSKLLQRGGKVKPIDMNDLLEGY
                     LELFQERAKPSFKERLLFTGIEALDGKLGGINDTDICIVAGRAGNGKTETAITFTKNI
                     IENKGSVLFFSLEMSKEQIMDRLIASASGVNSVKLRNPEMMNDEDFARMGTAIQPLQN
                     QQLYIVDKSGLTAEEIVAIAESHIQEYGKVSAVVIDYIGLVRHGKLDGKINRTYQIGE
                     SMERFKTFCKNNHTPMILLAQLNRNADGSRPTNADLRDSGSLEQDASQIIMVHNQRNK
                     DGEPAPYTEWIVTKNRFGANGTVYMQFQQGRFVECDQAEAREYFQPKETKTSSNKRYG
                     AMQ"
     gene            4734..5270
                     /locus_tag="PXC99_000497"
     CDS             4734..5270
                     /locus_tag="PXC99_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HDL5416982.1"
                     /translation="MTDFDKNIKYKIIYADPPWKYKDSGCNGSAENHYTTMNIKEICD
                     LPVQDISDKDSILFLWVTYPMLPEGLKLIEAWGFNYKTIGFQWVKTNKKNKNSFFFGL
                     GRWTRGNTECCLIATKGKPSRVSNKVSQLIIEPIQHHSKKPDIVREKIVELMGDLPRI
                     ELFARNKTQGWDVWGDEV"
     gene            5361..5576
                     /locus_tag="PXC99_000498"
     CDS             5361..5576
                     /locus_tag="PXC99_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416983.1"
                     /translation="MITYKCPKCNGELEDLSINDEWGWFLDEPYRCNGHYTGRFPNIS
                     RDSTLNRTKSCGYFSKEEVKKVNGTQR"
     gene            5560..6066
                     /locus_tag="PXC99_000499"
     CDS             5560..6066
                     /locus_tag="PXC99_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1367 family protein"
                     /protein_id="HDL5416984.1"
                     /translation="MAHSVNDIVKAHGRRYKARLKIQMIKMQGGVLVPLNEREAEALV
                     SLKNGEQYEIEVIRTRNPAFHRKVFAFLNFCFEYWSADKTEWEFFDERKQFDTFRKNL
                     TVLAGFKEITYTLDGRMRVEAQSLSYGNMEQDEFEQVYKALINAAIKHVFNNTKDENR
                     INQLYSFF"
     gene            6116..6328
                     /locus_tag="PXC99_000500"
     CDS             6116..6328
                     /locus_tag="PXC99_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416985.1"
                     /translation="MKKNVIRYWLSVPFRIIAVLFFLVILTVRYVGYLLIYPLAFFAA
                     VGSFIVFCQWTYQEWLYYFKRGFAPI"
     gene            6374..6568
                     /locus_tag="PXC99_000501"
     CDS             6374..6568
                     /locus_tag="PXC99_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416986.1"
                     /translation="MTKFFETIAFVMLFGIIPSCLLAINTTLMNMNIKNAPWFMVIIQ
                     LGFNITCYWLWFISVMRNVI"
     gene            6696..7265
                     /locus_tag="PXC99_000502"
     CDS             6696..7265
                     /locus_tag="PXC99_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein NinG"
                     /protein_id="HDL5416987.1"
                     /translation="MANKPPKQHKCKECGSYYIKFQSTQQVCSVKCAMAMGKRKTEAK
                     RKKSAKIDRLEQRKRLEKLKSRRDFEKDLQKIFNKFIRLRDKDLPCISCGRYHQGKYD
                     AGHYKTVGGNPELRFNEDNCHSQCVPCNRHLHGNIVNYRVNLIEKIGLERVEFLERKD
                     HPPLKLTIEQIKDLIKVYKAKCKELERVT"
     gene            7255..7728
                     /locus_tag="PXC99_000503"
     CDS             7255..7728
                     /locus_tag="PXC99_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416988.1"
                     /translation="MLPRKIKNKWLEPEKQKWIEELLRLWGAWEFGGLDLESRVNMIY
                     RLMKSAEGVKSLSSREVCNDSLGTLINEIFTVVTKRDVMLADILKQKYWFGRSERQIA
                     IYYQLRDSEGRKERRWQEIIQDKCKKAERIIADILESKISSSNSTDKLKKYQFSP"
     gene            7956..8031
                     /locus_tag="PXC99_000504"
     tRNA            7956..8031
                     /locus_tag="PXC99_000504"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7989..7991,aa:Trp,seq:cca)
     gene            8048..8233
                     /locus_tag="PXC99_000505"
     CDS             8048..8233
                     /locus_tag="PXC99_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416989.1"
                     /translation="MYNLDDAIQECREKFGEDKPYFSEAGTLTFAGCKALSRLRDEKL
                     GIKAPPNFPFPRVEDLS"
     gene            8259..8429
                     /locus_tag="PXC99_000506"
     CDS             8259..8429
                     /locus_tag="PXC99_000506"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416990.1"
                     /translation="MTEQLNTQSKSGEEDQEKSQDRYAVGWPSRRISDCVQHFRSRKI
                     YPFASNNDVKQG"
     gene            8572..8817
                     /locus_tag="PXC99_000507"
     CDS             8572..8817
                     /locus_tag="PXC99_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416991.1"
                     /translation="MKLMKDMGTQSYIWSGFSTWLAWLGEQQNLMLLSLAIGIVTAIA
                     GLIQRFDEWRRRKREDERAEELHQAKMARLRKGLSDE"
     gene            8810..9379
                     /locus_tag="PXC99_000508"
     CDS             8810..9379
                     /locus_tag="PXC99_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HDL5416992.1"
                     /translation="MSKSLKYGSGIVCGIAAIITLVQYQHPEIRTNQAGLEIIGNAEG
                     CRRDPYKCPADVITVGIGSTEFGGEKIDPNRIYSDKEIAERWAKDLKIAESCVNRHFN
                     GKDMNDNQFSGMTSAVFNMGCYNMRFYRNKQGQYVQTTIHKLAVNKQFEEMCHRLPDF
                     IRASGKVLNGLVIRREKEKALCLTGLVAR"
     gene            9352..9702
                     /locus_tag="PXC99_000509"
     CDS             9352..9702
                     /locus_tag="PXC99_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2570 domain-containing protein"
                     /protein_id="HDL5416993.1"
                     /translation="MLNWISGTIAIVILGLCVWLWGQSQMIDSLRAENRAQAQTIEQQ
                     QKANQRLTDSLEQERQAVEKIQKIANELRNKVEMAKNEITSILAQDSCAKADLPNGVA
                     DSIKRLHQQNNHKH"
     gene            9707..9880
                     /locus_tag="PXC99_000510"
     CDS             9707..9880
                     /locus_tag="PXC99_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416994.1"
                     /translation="MYPPAAYLVPCGRTEFSGRTYGDTVEYLVKVMGERDLCANQIDR
                     IREWQAQTKQGFK"
     gene            10272..10796
                     /locus_tag="PXC99_000511"
     CDS             10272..10796
                     /locus_tag="PXC99_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HDL5416995.1"
                     /translation="MTKKGEVKATSKGVGKLTDKQKRFVEEYLIDLNATQAAIRAGYS
                     EKTAYSIGEENLRKPEIRSAIQEAQNKRSERTQITQDDVLNGLLEVIAMSTGKKIVTE
                     TDVAKNENGELVGFDIAKTKFEPAAANKALELLGKHLGMFKDKVDLINSDGSLNRPMV
                     IELIAPSLDDESTD"
     gene            10780..12012
                     /locus_tag="PXC99_000512"
     CDS             10780..12012
                     /locus_tag="PXC99_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PBSX family phage terminase large subunit"
                     /protein_id="HDL5416996.1"
                     /translation="MKAQIELPPKLLPVFAKDYRYKGAYGGRGSGKTRAFAKMSAVSA
                     YKRAMQGESGVILCGREFMNSLEESSLEEVKQAIKSEPFLANFFDVGEKYVRTKDGRI
                     SYVFSGLRHNLDSIKSKARILIAWIDEAETVSETAWRKLIPTVRENNSEIWVTWNPEN
                     RGSATDTRFRQNPPENSCIIEMSYQDNPWFPDVLEQERLNDKQRLDDATYRWIWEGDY
                     LESSDAQIFRDKYQELEFKPNPDFNGPYYGLDFGFANDPTACVKCWVFDDDLYIEREA
                     GKVRLELDETAAYLANALPDLSNYTVRADSARPESISYLKRHGLPYIQPVPKWKGSVE
                     DGVEHIKSYRKVYIHPSCTEVLKEFRLYSYKTDRLSGDVLPIIIDAHNHYIDAIRYAL
                     NPLIQARGEAKQCALKVY"
     gene            12025..13428
                     /locus_tag="PXC99_000513"
     CDS             12025..13428
                     /locus_tag="PXC99_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4055 domain-containing protein"
                     /protein_id="HDL5416997.1"
                     /translation="MPNSISADFAALKAKTKIIDDLLGGTQKMRQAGQTYLYKMKMEE
                     EDGYKNRLNRSTLYPALRETLSQMLGRVFFNPINVEDVHKQIEPLFDDIDLEGNNLDV
                     FASRWFYAALAYGVSYCLVDFVRVENARSLAEEKAQNARPYLVHIKPQQVLGFKTAKI
                     NGKTAFTQFRYKETVTEDDGEFASKQVNYIYVYEIGRVRKYKNDEGGLSLVADMQIKA
                     QNTPLAFVPIVPFITKPIDVWGMGEPPLMELAYLNIKHWQSQSDQDNILNIARVPLLA
                     IFSDTQIKSLEIGSSAISLPKDSTMQFIEHSGSSINAGLTSLKELEDQMKTAGAKLLT
                     KTALAMTDSQAKDEAGKEISQLRHYANKFEDALDLAFEYIGHWLGIGVDEVGTSQISG
                     NIDNDLDPNASMATIIQLRNAGVISNHSTFEEAKRRGLLSDSAKWEDEQARLQAEGLS
                     DDFTNPFNSNQSENAAS"
     gene            13376..15037
                     /locus_tag="PXC99_000514"
     CDS             13376..15037
                     /locus_tag="PXC99_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDL5416998.1"
                     /translation="MTLQIHSIRTKVKTPLAKRIAHALTDRKILQFRFDAHLRNQVWQ
                     RLTKTQKALLNRINAAGIDALPKRELDKLLKELKAEIAKNYQETTAYIQPELSGFFAV
                     EKQALTELYNDEIGYDFFNQVPSYQRKATQQATIIAGMPLESWFEKQGSELSFKFEST
                     IRQGLLEGRQTPEIAKATAELFGISRRHADTLVITAVAKVADDAHKALRDENLDLIKG
                     EMHLSTLDTRTSTVCQVRDGKMWDTDYKPIGHSLPYQRPPLHPRCRSILQLVMKDWKE
                     LGFDDVKEMPKSTRASADGQVSEKTNYEEWLSSKTPEEQDKALGKGKADLWRRGVITF
                     SDMLDQSARPLTLKELYSLKNSSSVDKMDSVELVRKKAVAVEPMITRDVVSIITASGG
                     EPAGLDFRLKSLSSLQRKIDTEIMAGVSKEQAIASIRDVIRYTAILDEQRFVEQYQKM
                     QKDLEKQGYSTIIVKNTWKSNNAYKGINTFVSTFIEKNNIIFELQYHTKQSFELKNGK
                     LHELYEKFRDLNIPLAKKSEILLEMQKLSANLKEPKNIDLIKEKK"
     gene            15037..15255
                     /locus_tag="PXC99_000515"
     CDS             15037..15255
                     /locus_tag="PXC99_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5416999.1"
                     /translation="MYQYYLAQVGNEQQKLIRGMPDNLLSFSVYEPEQEDWDNKFGPF
                     WADKILISGFDAYEEISEKEAIRFIKVH"
     gene            15256..15669
                     /locus_tag="PXC99_000516"
     CDS             15256..15669
                     /locus_tag="PXC99_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HDL5417000.1"
                     /translation="MCQAEQFARQLHYGQTDKAGKPYIEHLAFVAENISTKNEETEAV
                     AWLHDSVEDTQCSINDIRHIFGDVIADAVEAITKKQGESYFCYLDRVKSNPIAKVVKL
                     ADLTHNLCLERLPKITEKDLKRAEKYKSALEYLQA"
     gene            15787..16521
                     /locus_tag="PXC99_000517"
     CDS             15787..16521
                     /locus_tag="PXC99_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417001.1"
                     /translation="MKLKLDENGHVVVENGMPVYIHDDGKEIPFDALKATQKITQLNA
                     EAKQHREAKEKAEADLKAFSGIDDPKAALEALKTVANLDAKKLIDAGDAEKVKAEIIK
                     GYDEKLAVATAQAEKLQQQLHAELIGGSFARSKYAQEHLNIPSDVVQAFFGKHFSISD
                     DGKVVAKFADGGEIFSRTRPGEKADFEEALEALVSAYPNKDAILKPSGSSGAGAGGGS
                     RSSSMPKTLSDCKTDEERIAYLQANS"
     gene            16587..17534
                     /locus_tag="PXC99_000518"
     CDS             16587..17534
                     /locus_tag="PXC99_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005643804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417002.1"
                     /translation="MAFDLQVFNKQTQLALTETVDQAIEKFNAASGGAIILQNKPAEG
                     DFDIRASFKGIAGLVRRRNVYGTGTVDAKRLEQLLDVAVKVAAGTAPIEYQPSQYKWI
                     LLNPELAAIEIGTQLAKARVADMLNTAIAGTVAAISGNTAMTLDEKTAAPTFRILNKG
                     AAKMGDRAGSLKAWVLHSTTLHGLYDNALTNAENLFKYENVNVIRDPFGRVFVVTDSP
                     ALMASDGTFNTLGLVENAVVVSGNNDFDSVLVPKTGGENLSAVYQAEWTYNLGILGYK
                     WDMTAGGKSPNDTALGTPTNWDKSVTSNKDTAGVLVKTK"
     gene            17594..17944
                     /locus_tag="PXC99_000519"
     CDS             17594..17944
                     /locus_tag="PXC99_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417003.1"
                     /translation="MKRILYFTTDFSAKNIAFAKAHGVLMRNLNAYHPSDTLENADAV
                     CGNVPQAYQHLPLFELPESNQKSGQDLKTLKTEEIKEKLTELGIAFEANAKKETLLTL
                     LTQAVGRDGTNDAK"
     gene            17934..18371
                     /locus_tag="PXC99_000520"
     CDS             17934..18371
                     /locus_tag="PXC99_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417004.1"
                     /translation="MLNSYMTVEQANAYHDIRMSREAWNALSDQEKQQRLVSASDFLD
                     FNYRFSGEKADLTQEREFPRKGFEAIGIPKAVQFAVCELALQDNLTANQEAQMSSVRV
                     GPVSVNYDNSSPQNSVNRFEYVRQLLSTWLDRSSFGTVKLERS"
     gene            18371..18742
                     /locus_tag="PXC99_000521"
     CDS             18371..18742
                     /locus_tag="PXC99_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417005.1"
                     /translation="MADFYGNLGKISHSLIKQFGQPCSVTINEQGRYNPATGERKKGS
                     STVHAGYCLFDNLAFDFRNQQSVSVQQGDVMIYLTADCKPVLNAVIEANGEKWSVINV
                     QPIRPAATTMIYQVQGRKADG"
     gene            18735..19148
                     /locus_tag="PXC99_000522"
     CDS             18735..19148
                     /locus_tag="PXC99_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HDL5417006.1"
                     /translation="MGSFHAQIARFVEQTQQKADRALRVIALQTLSGVQKKSPVDTGQ
                     LRRSWTVALNGFPSSYNGSQTVLNSAKFGDMIVIATNKPYAPMLEYGLYPNPPKKPTG
                     KTKNGYSIQAPNGMVRITVQEMQAFIRNNPQLGVS"
     gene            19148..19540
                     /locus_tag="PXC99_000523"
     CDS             19148..19540
                     /locus_tag="PXC99_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417007.1"
                     /translation="MRPIIRSVLEQHLAELNPFNTVWEGIIDSPKLPYQTVSMTTSTN
                     ETATIGNTPKAKQSGFLQVTLYYPLDQGTKAIEERADEIFRHFFGQVWIEENVQILVQ
                     QPPLVASLYRLDNSIALPVTIYFTAYEL"
     gene            19550..20572
                     /locus_tag="PXC99_000524"
     CDS             19550..20572
                     /locus_tag="PXC99_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417008.1"
                     /translation="MSILGNSQGTKRTVVFAKESSFGTKAAPTGAKIMPRVETSLNTN
                     FESYQSEEIRDDLQRSASVIGFEKVEGDIKGELAAGQWAAFFAAALRGSFTAQAKKPI
                     ITKTTDGTGEKNGKILIVPKTSHTSDSFTLEDVFKDINVSRQYLGCRVSKLSLDVQPN
                     GIASITVSFLGQRGEESTTAYFTNPTDLTQSGKLAGVKGSLQVNKRPVGLVTAFKLDI
                     DLGASSEPVLGAKYAPDVFIGTVAVSGSFTMYFQDKTMIDAVRNGTDLSLALRMDAEE
                     RTNTDYLTIILPGVKVTSNELDDGAKNIMQTLNFDAFPAVWDSASQIDNVLKVATTMI
                     VQDSLA"
     gene            20662..21063
                     /locus_tag="PXC99_000525"
     CDS             20662..21063
                     /locus_tag="PXC99_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417009.1"
                     /translation="MNLNALSKEKQLAEHRFELVHPVSGEPLGVFMSVVSAKSDKAQR
                     FAEKQLRQEQMRELENAKSRKPKFKGLGDMIAESRAMAIDRLTGWENVEWNEKPLEFS
                     DQNAELLLTECDWIVEQIFEHSNDLGKFLKS"
     gene            21078..21404
                     /locus_tag="PXC99_000526"
     CDS             21078..21404
                     /locus_tag="PXC99_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417010.1"
                     /translation="MYAEKTFKLDKKLKGSESTLREHLQAIEMQTGITPEELHNPEPS
                     PAVAYLLGWFFELAMSRQSGMSLNPISYTEIDAWSRLFARHLEQWEISVIKQLDMIYL
                     NVQQTE"
     gene            21406..21729
                     /locus_tag="PXC99_000527"
     CDS             21406..21729
                     /locus_tag="PXC99_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5417011.1"
                     /translation="MDTFNFQPNWGLNVQRKPEVMKIAFGDGYEQVAPKGLNHNLRTY
                     SAVFTGTEARIKQIEAFFERQGGYKAFLWTPYGGKEGKFRCEEWEVSISSGKWTLSAT
                     IREVL"
     gene            21816..22508
                     /locus_tag="PXC99_000528"
     CDS             21816..22508
                     /locus_tag="PXC99_000528"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417012.1"
                     /translation="MKKIFVSALLLTCSLSALGNSSYELIIDSMQDLEKHKPEILSIP
                     EADRNTFIRYMMRKELRIKLNQGRLADGLTVREAIQNQQAFEKDRNSKMQQEKQKKET
                     EKAEKEKAVTDFNQKFELSITGARKAKNALNQDILLVSLSLKNNSDKPIIAVQPDIQF
                     VLGEDKQTISSMRPKKFENGIPPNGSEIFEFGFDLDDMFALKAEKNIEKLRAVFQTAE
                     VLFADGTTEKLQ"
     gene            22572..23396
                     /locus_tag="PXC99_000529"
                     /pseudo
     CDS             22572..23396
                     /locus_tag="PXC99_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015691083.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tape measure protein"
     gene            25440..25598
                     /locus_tag="PXC99_000530"
                     /pseudo
     CDS             25440..25598
                     /locus_tag="PXC99_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251214.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
     gene            25606..26322
                     /locus_tag="PXC99_000531"
     CDS             25606..26322
                     /locus_tag="PXC99_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL5417013.1"
                     /translation="MPISISNQMKLDLAKLEQNAMLDLYEVDLRNLKDKSGNAGRVYR
                     FYSGLNELKTSIVWQGRTYDPYPIEASGFERNSSGPSNRPTLTLSNLFGLITSIANQF
                     DECIGAIVRRHQVYAQYLDAVNFAGGNAKADPNQEIISHFVIEQLTSLTRETATFTLA
                     LPIETDNAKIPSRIIMADTCTWIYRSAECGYTGKQYFDEKDKSTSDPKADKCSHCLNG
                     CELRGNQRNFGGFVSVNKLG"
     gene            26326..27057
                     /locus_tag="PXC99_000532"
     CDS             26326..27057
                     /locus_tag="PXC99_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL5417014.1"
                     /translation="MELEQQIIDYALQHEPHEMCGFVVFDGNKNRFIPCENQAEDKAN
                     YFEISDLDYIKAEEKGELVAVVHSHPEPNGKPVLSTLDRKMQVQTGLDWWLVHNRQIH
                     KFRNVPHLIGREFKHGTMDCYTLYRDAYMLAGYEMDEFERQDDWWHTGQNLYLDNIQG
                     QGFERVETPQIGDVILMQVGADVPNHAAIYIGEQMVIHHSPNRLSKRDLYDGYWLRHT
                     HSIWRHKLAEKLDFDGILNDIAVNN"
     gene            27326..27916
                     /locus_tag="PXC99_000533"
     CDS             27326..27916
                     /locus_tag="PXC99_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HDL5417015.1"
                     /translation="MITVKFYGHLRKFGTDFRLEVKDTAEAIRALCSQLTGLRETLRD
                     GIYKVRIGKQYLDASALEKGLFYCLKKGQTIHFTPVIKGAKSGGVFQAVLGVALIGAA
                     FFLGPVGWGVLGASSAMMMGAMGASMLLGGVAQMLTKMPNAPNIGNEKEKENSTSFSN
                     LNNLVAQGKPVPLAYGLIRTGSLVISQGVETMTVEV"
     gene            27919..>32592
                     /locus_tag="PXC99_000534"
     CDS             27919..>32592
                     /locus_tag="PXC99_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HDL5417016.1"
                     /translation="MGLFSRKRKNHTPKEAPETGRSKQIVNIVELLCEGEIEGLVDGF
                     KSIYLDGTQIQNDDGTYNFNNVSGQLNVGTQDQEVLEGYDSSQNEVSVGVEVKKKNGA
                     IVRTVTDERISRLRLTLGVRSLFRQNNQGDTNTTNVDLKITIGTRQYSHSFNGKYSSQ
                     YLESVVFDNLPSVPFNISVERVTEDSNSQRLQNGTIWSSYTEIIDTEFTYPNSAVAGI
                     SFDSEYFNNIPTRNYLIKAKKVKLPSNYDPVKRTYTGFWDGTFKVAWTNNPAWEIYDL
                     APILSKMLGVEISFDKWALYDVSRYCDQLVPDGMGGQEPRFTCNVWLTEVKTAYDLLN
                     DFCSVFRAIPIWTGTEVSVIIDRPRDPVWTYTNANVVSGFERSYSARKSRHNAVQVTY
                     SDKTNGYESAIEYVSDDEEIKKHGLNLSQITAFGCTSRGQAHRTGKWILETEKREKET
                     ITFTVGREGLMHLPGDIIRVADSHYAGTEIGGRVLAINGRKVTLDREISIDNASYFTY
                     INGEATHSSKIQSVNGKEITLDSTPTGLETYGVWSLSTKQISSGLYRSISIVENADGT
                     NTITALQHEPQKEAIVDNSAHFVETARTLYKAPQINAVEVSTGYDGKLYITGDISSGD
                     GKLTYDIKITKDGNLYQYKKGLSDPNIELSDLPNGDYTVIIYGKNAKGQIVTEKTQTF
                     TIDRPPAPTGVVVTGGLGQITLEWDWVNEVTQTEIFAAETDNFALAKKIAKVTARTYA
                     HTLKGNKVVRYYWLRHTRGINVGPFYQQQGVRGQTAVDLDARLTELNTQLSRNIVNEV
                     FDVAAPARGLELVKTVANLTDKGTKLASSQVYNQADGKLYTWNGTAYSATVAAEDVTG
                     KLSKSKIDTSLISQLTGADNTANLARRLAETAQSNINQEITNRQDAVTAEANNRTKAI
                     QAESANLTKKIQAEATARGAAVTQLQNVDAQQAQLISAVTAKADNALSGLEEEKTARA
                     NADKAESQAREALTARMGAAESNIVTIQRTVANNAQSISEVSQNLNAKIDNINIGGRN
                     LLRDSEFNAYNKWGSPQIEFAENANRRTIKVTSTGTNGPVGIVSSNRHSTSYFQQGET
                     YTLSLFARGSKALDYLYLMRQDGNNVRLPVINVASETEFNHYKLTFKAPFTTQQGYVL
                     IGFRQTSTEQFVEFHSVKLEKGNVATDWTPAPEDVESAVSAVSADLTSYKQTQAATDS
                     AQAQQLNQLSVNLTKAETNFNAKITEEKKARVDADKVNADKLTDITSRVANAESTITN
                     FQSTKANKSEVASIAQQNLQSIWRTDAQSAVDALKIGGANLLVDSEYLTTARWGGSSR
                     VASSQYGDRRLTQVFVTQAGTGHFGVTQGTQKATTRIRQGETYTLSLNAQGTAGFTRT
                     GLNYVYLIREDGGNFRLPTLPLTASLSQRPKVTFTAPWTSNQVRLLIGANGIFEATDW
                     FAFHSVKLEMGNVATGWTPTAKDIDDKVSAVQSNLTAYQAAQAKADQAKATQISGLTT
                     RMGAAESNLTRTERAVTELNQTTVTTLRDLTARTKTTEGSLSRLETAKASKTEVASIA
                     QSSLQS"
BASE COUNT        10335 a         6150 c         7487 g         8620 t
ORIGIN      
        1 attttatctt ttgaattgtt gtagtaacag atcgagttta ttatcaaccc catctatttt
       61 cttctccata ttgcctagtc gctgctcaac attgtctagt cgttgttcga cattatccaa
      121 tctagattca actttagtga ggcgaatatc aagatttttg atattggtct ctacttggac
      181 aaacttatca tcaattttcg agaatcgagc ttcaactttg gtctcaaggt gtgaatatac
      241 tgtccataat gcaattacag cagtaactac taatgcaatg agtgtagagc caccagcttt
      301 ataaaaagcc tctttcgtca aataatttga cttgatttct cttacatcgc cttcaacttg
      361 tcttaatcga gcatataaat tcacttcttc cgtctcctga taactaattt gtgaattatt
      421 atgcccgccg tatactgcat ttgcaagtaa ggatagtatg attgcatctc taggatcatt
      481 ttgaatcatt ggtctattca ttttgtgagc ccttaatcca ttctaaaatt ctctctctgt
      541 cgaaaaaaag catattatta cagcaaacac aagtgacaat aacggctgtt ctcgcttttt
      601 ggtctaacca atattttgtt ccttcccgtt cattgaaatg caaagaatga aattcaggag
      661 ctgcaaattt cataacttca tcaggagatg gctctattcg gtatggaatg gttggaacac
      721 cgataatttt ctctccgcat aattccgtaa aagtgtcata gccatcgtgt aaataatgtt
      781 cttggctatt acaaataggg caagttaaat tccgcccagt acgttgcgtg ataaaatccg
      841 caaactgttc aggtttaatg cgtttattat tcattttaac ttcctttcta cccaataaaa
      901 ttcaactgtt agctttggtg gactttacaa atagcttcta tgctcaacag cgacaccaat
      961 aatacgaata tcttgtttca ttgagctgag tgttggaaag tcggggttaa gcggtattag
     1021 ctcaaaatga ggattgccgg attcagacca ttcgcctaac tcccgataac gttttaaagt
     1081 agcctcacct gtgccattaa ccgctgctac ataatcgccc gggtgaggac gtttgcgaat
     1141 atcgattaac accagatcgc cttcactaaa tttaggctcc atcgacattc cggaaattct
     1201 taaaaagaaa gcgtccggtc cggcatcaat ttccgtatcg atatagtcgt agccctccga
     1261 atctttgaaa tcaaaggctt ctgtccataa acccgcttgt atattgctga tcaacggata
     1321 tgagttcgat tttgtcggtc tggcaagctg aacgtttgta tcaaaagcaa gtgtttctgg
     1381 agaaacacca agcactttgc tgagtatttc aatatcatca agatcgggag tacgattgtt
     1441 tctctcataa ttagcaatgc gagattgccc ccatttgtta tttttatctc gattatctat
     1501 tgatgtacat ctttcagcaa cttcatattg gctgattcct agctgttctc tgtaagcctt
     1561 aattctacta cctaaggttg tcatagcact ctcctattag attttcctca ttttaacacg
     1621 ctccgttata tccttgtgaa tcacaaaatg aaatttacaa ttagttcatt ttgtgattta
     1681 attaaaagat ataaatcaca aagagaaatt tgtatgaata agatagctga aatacgaaac
     1741 caaattggta taagtcaagc tcagttagct gttcagattg gttgggggca accaagaata
     1801 gctaactatg aaactggaaa tcgtacccca tctatttacg ttgctcaaaa aattgttgag
     1861 ggattgaacg aattaggtgc aaacgtacga attgatgacg ttttccccgt tggcaactaa
     1921 tttaccccaa gaggcttgca atgccacgca atgaattaac aaaaaatgca agagcgattg
     1981 cggatttgat tcatcgaaaa tccgcaacgg tgacgcataa gaaactagca agagcaatcg
     2041 gactgagtga atcacaattt agccgtacat ttgcagataa tgtggaaatg gtggcggtga
     2101 ttattgatta cttaagtatt gagcttgcgg ataaagacga gttactagag ctgaaagaga
     2161 aacgatataa gcgaataaat ctcgaagaag cgacaacata gaagttacca acaatgaaaa
     2221 attttttaga aaaattcaaa tcattctacc acagtaaaaa ttcaattttt attagagtgg
     2281 caatttttat gctgcttgcg tggtgggttt ttaacaatta aaaaaccacc gctggaacgg
     2341 tggtaattta caaggagtta ccttttgaaa aatcaacgca atgatacaca aaaaagctcc
     2401 ttatggcaag agtttgaata tcgaaaacgg ttaaaaaatc tcattgaaag cggtttatcc
     2461 gtagccgaaa ttgaaacccg ttcacaacaa atttatgagg agctgaaaag tgaatgcaca
     2521 accgaagcaa attaacccaa ttttaaaatt gcaccctaaa caatcagagg ctaagaaagt
     2581 gagtgttgat gatggttata cacaaattcc gaatgagtta ttaaaagcaa ttttgcgatc
     2641 gggtgtttta ggttggaaag gctcttactt actggctacc gtcttaaaaa cattgtcttg
     2701 gcataaagaa agtgattggt tcacgcattc ccaagtgtgt gaaatgatga atattgagcc
     2761 gacaaaatac catattaatc aactttccgc tgctcgaaaa gaacttatcc gtgaaaatat
     2821 cttgtttgaa gatggtaagg aaacaggggt aaatctcagt gtttttgaat ggaaaatggt
     2881 atatcccgaa aaagtaggga gttcccgaaa taatagggaa ttaattcccg aaaaagtagg
     2941 gaatgggtat cccgaaaaag tagggaacac aaaagaaact attacaaaag aaaaaataaa
     3001 taatgaattt actaacgtaa attctgtgca acagcccgag acctctttgc cgaaaaaaac
     3061 aaaatctgag ccggtcgatt atcaaggagt gatggaagaa tttaatcgtg ctgtggaaga
     3121 cacaccgatt ccgcaaattc gggcgatgag tgatgagcga aagcgatcgg ttcacgcatt
     3181 agcaaaaatc ttgcgaaaag aatttggtgg ctacaccaga caacactttg ccgattactt
     3241 caatgatttt gtccgacagg caagtagccg gaaagacaga ttttattttg gcgggcttga
     3301 tggctcggct tgggtagcaa atttcggcta catcattcgt tcgaaaacgt tttataagac
     3361 ttgggaagat tcgctatgag ccaaaatttg aaaaatatca cttacgaggt tgaatatttg
     3421 ctggttggag cattgctgaa atccggtctt aactcgaaag ctagggacgt attgagctgg
     3481 ttagagcctg aaatgttcgc tacctttcaa cttggggtga tttatgaggc tatccgcaag
     3541 caggcgttga aagataacgt gatcgatatg ctgttactca ataccgacta cggacaagat
     3601 tttgccacgt tggcagagat aatgaaaaac acgatcagcg gtgcaaactt agacggctat
     3661 gcagaaaaag tccggcaata tcatcaacgc cgagaagccc agcgagtgtt tttagacgtt
     3721 gcaggtgagt tgcaaaatgc ccgagacgag cagttagatg ctatcacttc aaccgggtta
     3781 gctcacctaa gcaaattatt acaacgtggc ggaaaagtga aaccgattga tatgaatgat
     3841 ttgctcgaag gttatttgga attgttccaa gaacgtgcaa aaccaagttt taaagagcgt
     3901 ttgttgttta ccggtataga agcattagat gggaaactag gcggtattaa cgataccgat
     3961 atttgcattg tagcaggacg tgccggtaac ggtaaaaccg aaacagccat cacgtttact
     4021 aaaaacatta tcgagaataa aggttcggtg ctgttcttct cgctggagat gagcaaagag
     4081 cagattatgg ataggctgat tgccagtgca agcggtgtaa attcagtaaa acttcgcaat
     4141 ccggaaatga tgaatgatga agattttgcc cgaatgggaa cggcgattca gcctttacaa
     4201 aatcagcagt tgtacattgt tgataaaagc ggattaaccg cagaagagat tgtggcgatt
     4261 gcagagagcc atattcaaga gtacggcaaa gtgagtgcgg tagtgattga ttatatcggt
     4321 ttggttcgac acggcaaact agacggcaaa attaaccgaa cctatcaaat cggtgaaagt
     4381 atggagcggt ttaaaacttt ctgcaaaaac aatcacacac cgatgatttt attggcacag
     4441 cttaaccgca atgcagatgg cagtcgccca accaacgcag atttgcgaga cagtggcagt
     4501 cttgaacaag atgcaagcca aatcattatg gtgcataacc aacgcaacaa agacggcgag
     4561 ccagccccct atacagaatg gattgttact aaaaatcgct ttggagcaaa tggcacggtt
     4621 tatatgcaat tccagcaggg taggttcgta gaatgcgacc aggcagaagc gcgggagtat
     4681 ttccagccga aagaaactaa aacatcatca aacaaacgct atggagcaat gcaatgacag
     4741 attttgataa aaatataaaa tacaaaatta tttacgcaga tccgccttgg aagtataagg
     4801 atagtggctg taatgggagt gcagaaaacc attacacaac aatgaatatc aaagaaatat
     4861 gtgatttacc cgtccaagat atttcagaca aagattctat tctgtttttg tgggttactt
     4921 accctatgtt acctgagggc ttaaagttga ttgaggcgtg ggggttcaac tataaaacaa
     4981 tagggtttca atgggtgaag acaaataaga agaataagaa ttcttttttc tttggcttgg
     5041 gacgatggac tagaggtaat accgaatgct gtttaattgc aacaaaagga aagccatcga
     5101 gggtaagcaa taaagtgagc caattaatta ttgagccaat acaacatcat agtaaaaagc
     5161 ctgacattgt cagagaaaag atagttgagt tgatgggtga cttgccaaga atagagttgt
     5221 tcgccagaaa taaaacccaa ggttgggatg tttgggggga tgaggtgtga ttgtttcaag
     5281 ctattgttac ccaaagtgcg gtagggtttt attaaaaagg ttggcggttg tgaaggataa
     5341 cgaaggttgg gacggtttag atgattactt ataaatgccc caaatgcaac ggagagcttg
     5401 aagatttaag tattaatgat gaatggggtt ggtttttaga tgagccgtat cgttgcaacg
     5461 gacactatac agggcggttt ccaaacatta gccgagatag cacgttaaat cgcacaaaat
     5521 cctgtgggta ctttagcaag gaagaggtta agaaagtaaa tggcacacag cgttaatgac
     5581 atcgtaaaag cccacggcag gcgttataaa gcaagattga aaatacagat gataaaaatg
     5641 caaggaggcg ttttagtccc ccttaatgag cgtgaagctg aagcattggt atcacttaaa
     5701 aatggcgagc aatatgaaat tgaggttatt cgcactcgca atccagcctt tcatcggaag
     5761 gtcttcgcct ttttaaattt ttgctttgaa tattggtcgg cagacaaaac cgaatgggag
     5821 ttttttgatg agaggaaaca gtttgatact ttccgaaaaa atctgactgt tctggcagga
     5881 tttaaagaaa tcacatacac cctagatggg cgtatgcgtg tagaagctca aagtcttagt
     5941 tacggaaata tggaacaaga cgagttcgag caggtttaca aagcattgat taatgcagct
     6001 atcaagcacg ttttcaacaa taccaaagat gagaatagga taaatcagtt gtattcgttt
     6061 ttttaattaa ggcgaaatcg ccatatttaa ttaggtttaa ttgcaggaga ttaaaatgaa
     6121 aaagaatgtt attagatatt ggcttagcgt gccattcaga attattgcag tgcttttttt
     6181 cttagtcatt cttactgtta gatatgtagg ttatttattg atttatccat tagcattctt
     6241 tgcagcagtc ggtagtttta ttgttttctg tcaatggaca tatcaagaat ggctttatta
     6301 ttttaagcgc ggttttgctc cgatttagtg tgtgtttatt aattccctcg aattcggggg
     6361 aaggagaagt aagatgacaa aattttttga aactatcgca ttcgtgatgt tatttggcat
     6421 tattccaagc tgtttgttgg cgattaatac tactttaatg aatatgaata ttaaaaacgc
     6481 accgtggttt atggtgatta ttcagttagg ttttaatatc acttgttatt ggttgtggtt
     6541 tatttctgtt atgcggaatg ttatttaagg agattaataa gtgagccagt gcaatgaact
     6601 gactgtaatt ttaatcgcca tcgctattct tagtgtatgt gccggttcac tcttttttat
     6661 tgagtggttt gataagagag atggtgaggg ttggaatggc taacaaacca cctaaacaac
     6721 acaaatgcaa agagtgcggc agttattaca tcaaatttca aagcacgcag caggtctgct
     6781 ctgttaagtg tgctatggca atgggtaagc gtaagacaga ggcgaaacgc aaaaaaagtg
     6841 caaaaatcga ccgcttggag caacggaagc ggctggaaaa attgaaaagc cgtagagatt
     6901 ttgagaaaga tttacaaaag atatttaata aattcattcg cttgcgtgat aaagatttac
     6961 cctgtatttc ctgtggccgc tatcatcagg ggaaatatga tgcagggcat tataaaaccg
     7021 ttggtggtaa tcctgagcta cgttttaatg aagataattg ccacagtcaa tgtgtgccgt
     7081 gtaaccgaca tctgcacggc aatattgtga attatcgagt aaatctgatt gagaaaatcg
     7141 ggcttgagcg tgtggaattt ttagagcgta aagaccaccc accattaaaa cttactatcg
     7201 aacaaatcaa agatttaatc aaagtctata aagcgaagtg caaggagctt gagcgtgtta
     7261 cctagaaaaa ttaaaaacaa gtggttagag cctgaaaagc agaaatggat cgaagagttg
     7321 ctaaggttat ggggggcgtg ggaatttggc ggattggatt tagaaagtcg ggtaaatatg
     7381 atttaccggc tgatgaaatc tgcggagggg gttaaaagtc tttcatctag agaggtttgt
     7441 aacgatagcc tcggcacgct gatcaatgag atttttacgg tagtcaccaa aagagacgta
     7501 atgttagccg atatactcaa acaaaaatac tggttcgggc gttcggagcg gcaaatcgct
     7561 atttattatc aactaaggga cagcgagggt agaaaagaaa gacgatggca agaaattatt
     7621 caagataaat gcaaaaaagc ggaaagaatt attgcagata ttcttgaaag caagatttca
     7681 tccagtaatt ctacagataa actgaaaaaa tatcaatttt ccccttgatt ttagtgcgta
     7741 acaagtgtat attttgtgct aatggtggac gtagtataaa tgatgtttac caatgttagt
     7801 taaagacgca gcctgaagta atattcagtt cggaggagaa taactagaaa cgacgtcgag
     7861 tatagttatt tcagcgtttg cgtggcagta tgccgaccga attagtttaa cagccctgag
     7921 cagaaatgct tggggctttt ttgtttacgg attttaaggg tgtagctcag ttggtagagc
     7981 agcggtctcc aaaatcgttg gttgttggtt tgagtccaac caccctttcc aaatgcgagt
     8041 aaatgttatg tataaccttg atgatgcaat tcaagaatgc agagaaaaat ttggtgaaga
     8101 taagccttat ttttctgaag ctggaacact tacttttgct ggttgcaaag ccctctctcg
     8161 attaagagat gaaaagttag gaattaaggc tccgccaaat ttccctttcc caagggttga
     8221 agatctatct tagctacaaa aatcaatgag ggattgctat gacggaacaa ctaaatactc
     8281 agtcaaaaag cggtgaagaa gatcaagaaa aatctcaaga tcgctatgcc gtgggctggc
     8341 catctcgacg tatatcagat tgcgttcagc acttccgaag taggaaaatt tatccatttg
     8401 ccagtaataa tgacgtgaag caaggttaaa tgcttctggt ggtacagagt aaattcaatc
     8461 atttttaccc tctgctagtt tatttgttgg ggaacagtat tctagcagaa tttttaacca
     8521 aagctcagtc tcacgactgg gcttttttat tgcctcgaaa cggggtggag tatgaagtta
     8581 atgaaagata tgggaacgca gagctatatt tggtcgggat ttagcacttg gctggcgtgg
     8641 ctcggcgaac agcagaattt aatgttactt agtcttgcta tcggtattgt tactgccatt
     8701 gcagggctta ttcagcgatt tgatgaatgg cgtaggcgta agcgtgaaga tgagcgagcg
     8761 gaagagcttc atcaagcgaa aatggcaaga ttgagaaagg ggttaagtga tgagtaaaag
     8821 ccttaaatat ggcagtggta tcgtttgtgg tatcgctgcc attattacat tagtccaata
     8881 tcaacatccc gaaatccgca ctaaccaagc tggattagag attatcggta atgctgaggg
     8941 ttgcagacgt gatccgtata aatgccctgc cgatgtaatc acggttggca ttggctcaac
     9001 ggagtttggc ggtgaaaaga ttgacccaaa tcgtatttat tctgacaaag aaattgctga
     9061 gcgttgggca aaagatttga agattgcgga gagttgtgtc aatcgtcatt ttaatggtaa
     9121 agacatgaac gataatcaat tttcgggaat gacgtccgct gtatttaata tgggttgtta
     9181 taacatgaga ttttatcgga ataaacaagg tcaatatgtg cagactacca tccataaact
     9241 cgcagtgaat aaacaatttg aggagatgtg tcatcgacta cctgacttta ttcgtgccag
     9301 tggtaaggta ttgaacggat tggttatccg ccgtgaaaag gagaaagcat tatgcttaac
     9361 tggattagtg gcacgatagc cattgtgatt ttgggcttgt gtgtatggtt atggggtcag
     9421 tcacagatga tagatagctt aagagctgag aaccgcgcac aagcccaaac cattgagcag
     9481 cagcaaaaag ccaatcaacg gctaaccgat agcttagagc aagagcgaca agcggtcgaa
     9541 aaaatccaaa aaattgcaaa tgagctgcgg aataaagtgg agatggccaa gaatgaaatt
     9601 acatcaatac tggcacaaga cagttgtgct aaagctgatt tgcctaatgg cgttgctgat
     9661 agcattaagc ggctgcacca gcagaacaat cacaagcact gagtatttgt atccgccggc
     9721 agcttacctt gtgccgtgtg ggcgaacaga atttagcggt agaacctatg gcgatacggt
     9781 tgagtatctc gtcaaagtga tgggagagcg tgatttgtgt gctaatcaaa ttgaccgtat
     9841 cagagaatgg caagcacaaa ccaaacaagg gtttaaatag ctaattatct aattaaccgc
     9901 tattgaaaat gggagcgtaa cagctccctt tttgttttga tggaaagtaa atattacata
     9961 atttagctat ggtttcgggg ttggttggat aaaacaccga ggaaatacct aagtgatgtg
    10021 atttatataa aacaaaaccc cgaacatttg cggtgttcga ggttttttta ttacccattg
    10081 aaacggaatg agtaacaagt tatggaaatt attacatttt taaccgtaac catcaaggag
    10141 attcttatgg aatatggttt atggcaaata agcctagcag taacagtccc tattttggcg
    10201 ttcgtgtcgc caaagctgat taatgctatt gctaatctat taaatgcaat gaagtaaagg
    10261 aatttaaccc aatgactaaa aaaggcgagg ttaaagccac gtctaaaggc gtgggtaaat
    10321 taactgataa acagaaacga tttgtagaag agtatctcat tgacttgaat gcgactcaag
    10381 ctgctattag agctgggtac agcgaaaaaa cagcatactc aatcggagaa gagaacctga
    10441 gaaaacctga aatcagaagt gcaattcagg aggctcaaaa taaacgctcg gagagaaccc
    10501 aaattacaca agatgatgtg ctaaatgggt tgcttgaagt gattgcaatg agtactggta
    10561 aaaaaattgt gacagaaact gatgttgcga aaaatgaaaa tggcgagtta gtcggttttg
    10621 atattgcaaa aacaaagttt gaacctgctg ctgcgaataa agctcttgag ttactcggta
    10681 aacatttagg aatgttcaaa gataaggttg atttaattaa ttctgatggt tcactgaatc
    10741 gaccgatggt gattgaatta attgctccga gtttagacga tgaaagcaca gattgaacta
    10801 ccacctaaac tgttgcctgt ttttgccaaa gattatcgtt acaaaggtgc ttatggtggg
    10861 cgaggttcag gcaagactcg ggcatttgcc aaaatgtcgg cagtgtctgc ttataaaaga
    10921 gcaatgcaag gggaaagtgg cgttattctt tgcggtcgtg agtttatgaa ctcattggaa
    10981 gaaagctctc ttgaagaagt taaacaggcg atcaagtctg agcctttttt agcaaatttt
    11041 tttgatgtcg gcgagaagta tgttcgcact aaagatgggc ggatttctta tgtgttttcc
    11101 ggacttcggc ataacttaga tagcatcaaa tctaaagccc gtattttgat tgcgtggata
    11161 gatgaagcag aaacagtaag cgaaactgct tggcggaaat taattccaac cgtgcgtgag
    11221 aataattccg aaatatgggt aacttggaac ccggaaaata gagggagcgc aacagatact
    11281 cgcttcaggc aaaatccacc tgaaaacagc tgcataattg aaatgagtta ccaagataat
    11341 ccttggtttc ctgatgtgct cgagcaagag cggctaaatg acaaacagcg gcttgatgat
    11401 gcgacttatc gctggatttg ggagggggac tacttagaat cctctgatgc tcaaatcttt
    11461 agagataaat accaagaatt agaatttaag cctaaccctg attttaacgg tccttattac
    11521 gggctggact ttggttttgc caatgaccca acagcctgtg tgaaatgttg ggtgttcgat
    11581 gatgacttat atatcgagcg tgaagcaggg aaagtaagac tagagctcga tgagaccgct
    11641 gcttatttag caaatgcttt gcctgatttg agtaattata ctgttagagc agattctgct
    11701 cgcccagaat ccatcagtta tttaaaacga catggattgc cttatattca acctgttcca
    11761 aagtggaaag gctcagtcga agatggggtt gagcatataa aatcttatcg taaagtatat
    11821 attcatccaa gttgtacaga ggtattgaaa gaatttcgcc tttatagtta caaaacggac
    11881 agattaagtg gtgatgtact gcctatcatt attgacgctc ataaccacta tattgatgcc
    11941 attcgttatg ccttaaatcc tcttattcag gcaagaggcg aggcgaagca atgtgcatta
    12001 aaggtttatt aaaatgaggt aacaatgcct aactccatct cagccgattt tgcggcatta
    12061 aaagcaaaaa caaaaatcat cgatgattta ctcggtggca cacaaaaaat gcgacaagcg
    12121 ggtcaaacct acctctataa aatgaaaatg gaagaggaag atggatataa aaaccgatta
    12181 aatcgttcta cgctttatcc ggcattgagg gaaacgcttt cgcagatgtt ggggagagtg
    12241 ttttttaatc cgatcaacgt agaggatgtg cataaacaaa tcgaaccatt gtttgatgat
    12301 attgatttag agggtaacaa tcttgatgta ttcgcttctc gttggtttta tgctgcattg
    12361 gcttatggcg tatcttattg cttggtggat tttgtgaggg tagagaatgc ccgcagtctt
    12421 gcagaagaaa aagctcaaaa tgcacgtccg tatttggtgc atattaagcc gcaacaagtg
    12481 ctgggcttta aaacagccaa aatcaacggt aaaactgctt ttacccaatt tcgttataaa
    12541 gagacagtta cagaagatga tggcgagttt gcttctaaac aggtgaacta catttatgtt
    12601 tatgaaatcg gacgtgtccg aaaatataag aacgatgagg gtggcttatc actggttgct
    12661 gatatgcaaa tcaaagctca aaatacaccg cttgcatttg tgcctattgt tccatttatc
    12721 actaaaccga ttgatgtttg gggaatgggt gagccgcctt taatggagct ggcttattta
    12781 aatattaagc actggcaaag tcagtcagat caagacaata ttttgaatat tgctcgtgta
    12841 ccgctattag ctattttctc tgatactcaa ataaaatccc ttgaaatcgg ctcaagtgca
    12901 atatctctgc cgaaagacag tacaatgcag tttattgagc attcaggttc gtctattaat
    12961 gccggtttaa ccagtctgaa agaactagaa gaccaaatga aaactgccgg tgcgaaactg
    13021 ctaactaaaa cagcattagc aatgacggat agtcaggcta aagatgaagc aggtaaagag
    13081 atctcacagc ttagacatta tgctaacaaa tttgaagatg ctctcgattt ggcttttgag
    13141 tacattgggc attggctagg tatcggcgtt gatgaagttg ggacttcgca aatttcaggc
    13201 aatatcgaca atgatttaga tccaaatgcg tcaatggcaa ccattattca gctacgcaat
    13261 gccggtgtca tttcaaatca ctctacgttt gaagaagcta aaagacgagg tttattgtca
    13321 gatagtgcaa aatgggaaga cgaacaagca aggttacaag cggaaggttt aagcgatgac
    13381 tttacaaatc cattcaattc gaaccaaagt gaaaacgccg ctagctaaac ggatcgctca
    13441 cgcattaaca gatcgtaaaa tattgcagtt ccgttttgat gctcatttac gaaatcaagt
    13501 ttggcaacga ctcacaaaaa cgcaaaaggc attattaaac cgaattaatg cagccgggat
    13561 agatgcctta ccgaaaagag agttggataa actgctcaaa gaactcaaag cagaaattgc
    13621 aaaaaattac caagaaacga ccgcttacat tcagcctgaa ttaagcggtt tttttgcggt
    13681 tgaaaaacag gcactgactg agctttacaa tgatgaaatc ggctatgatt ttttcaatca
    13741 agtgccgtca tatcaacgta aagctacgca acaagcgact attattgccg gaatgccgct
    13801 tgaaagttgg tttgaaaagc aaggatcaga gctttcgttt aaatttgaaa gcaccattcg
    13861 gcaaggcttg ttagagggta ggcaaacgcc tgagattgcc aaagctacgg ctgaattatt
    13921 tggtatatcc agacggcacg ctgatacact tgtcattact gctgtggcaa aagtggcgga
    13981 cgatgctcac aaggcattgc gagatgaaaa tcttgattta attaagggtg agatgcactt
    14041 atcaacgctc gatacccgca ccagtactgt ttgtcaagtg cgagacggta agatgtggga
    14101 cactgattac aagcctatcg gacacagttt gccgtatcaa cgcccaccac ttcaccctcg
    14161 ctgtcgttcg attctgcaac tggtgatgaa agactggaaa gagttaggct ttgatgatgt
    14221 gaaagaaatg ccgaaaagca ctagggcgag tgcagacggg caagtgtcgg agaagacaaa
    14281 ctatgaagag tggctcagta gcaaaacacc ggaagagcaa gataaagcgc taggcaaagg
    14341 caaggcggat ttgtggcggc ggggagtgat aacgtttagc gatatgttag atcaaagtgc
    14401 tagaccattg acactaaaag agctatattc attaaaaaat agttcttcgg tagataaaat
    14461 ggatagtgtg gaacttgtcc gtaaaaaggc tgttgcagtt gagcctatga ttactcgtga
    14521 tgtagtatca attattacag catctggggg cgagcctgcc ggcttagatt ttcgcttgaa
    14581 atcactatca tctttgcagc gaaaaattga tacggaaata atggccggag tgtcaaaaga
    14641 gcaagcgata gcaagtattc gagatgttat tcgctacact gcaatcttag atgaacagcg
    14701 ttttgttgag caataccaaa aaatgcaaaa agacttggag aaacaaggtt attctacgat
    14761 cattgttaaa aacacttgga aatcaaataa tgcttataag ggcattaata cgtttgtgag
    14821 cacttttatt gaaaagaata atataatttt tgaattgcaa tatcatacaa aacaaagttt
    14881 tgagttgaaa aacggtaaat tgcacgagct ctatgaaaaa ttcagagatc tgaatatacc
    14941 tcttgcaaaa aaatcagaaa ttttacttga aatgcagaag ttaagtgcta atctaaaaga
    15001 gccaaagaac attgatttaa tcaaggagaa aaaataatgt atcagtatta tttagctcaa
    15061 gttggcaatg aacagcaaaa acttattcgt ggtatgcctg acaatctact tagtttctcg
    15121 gtttatgagc ctgaacaaga agattgggat aataagttcg gcccattttg ggcagacaag
    15181 atcttgataa gcggatttga cgcttacgag gaaatttcag aaaaggaagc aatccgattt
    15241 atcaaggtac attaaatgtg tcaagctgaa caattcgctc gccaactgca ttatggacaa
    15301 acagataaag ctggaaagcc atacattgag catcttgctt ttgttgcaga aaacattagc
    15361 acaaaaaatg aagagacaga agcagtagct tggttgcacg acagtgtaga agatactcag
    15421 tgttcaatta atgatattcg tcatatattt ggcgatgtta ttgctgatgc agttgaggct
    15481 attactaaaa agcaaggcga aagttatttt tgctacttgg atagagtaaa atcaaatcct
    15541 attgctaagg tggttaagtt agctgatttg actcataatc tttgccttga gcgattgccc
    15601 aagatcactg aaaaggatct taaacgagca gaaaaataca aatcagcatt ggaatatcta
    15661 caagcctagc ctaaaacgct aggctttttt atcgcaattt tttaccccaa actgaccgtt
    15721 tgtgagccat cacaggcggt tttttattat cgggcggaag cccaccagca atgagaggaa
    15781 gctcaaatga aattaaaatt agacgaaaac ggacatgtag tagttgaaaa tggtatgcct
    15841 gtgtatattc acgatgacgg aaaggaaatt ccgttcgatg cactaaaggc gacacagaaa
    15901 atcacacaac tgaacgctga ggcaaagcaa catcgagaag ctaaagagaa agcggaagcc
    15961 gacttaaaag cattctcagg gattgacgat ccgaaagctg cactcgaggc attaaagacg
    16021 gttgccaatt tagatgctaa aaagctgatt gatgccggtg atgcggaaaa agtcaaagcg
    16081 gaaatcatca aaggttacga tgagaaatta gctgtggcaa ccgctcaagc cgaaaaactg
    16141 caacagcagt tacacgctga attaatcggt ggttcgtttg ctcggtctaa atacgctcaa
    16201 gaacacttga atattccgtc tgatgtcgta caggcattct tcggtaagca ttttagtatt
    16261 tcggatgacg gcaaagtggt agctaaattt gctgacgggg gcgaaatctt tagtcgcacc
    16321 cgcccgggcg aaaaagcaga ttttgaagag gcattagaag ctttagtaag tgcttatcca
    16381 aataaagacg ctattttaaa accaagtggt tcaagtgggg caggagcagg tggcggatca
    16441 cgcagttcat ctatgccgaa aacattatcg gactgcaaaa cagatgaaga gcgtatcgct
    16501 tatcttcaag caaattcgta aggtgcaaga ggttgcacct tttttatttt cggtgcaatc
    16561 gcaccacttt ttagaggaaa atcaaaatgg catttgacct acaggttttt aacaaacaaa
    16621 cgcaattagc cttgaccgaa actgtcgatc aggctattga aaaattcaat gcagcatcag
    16681 gcggtgcaat cattttacag aacaagccag ctgaaggtga ttttgatatc cgtgctagct
    16741 ttaaaggtat tgccggttta gttcgccgcc gtaatgtgta cggtacaggt acggtagatg
    16801 caaaacgttt agagcaatta ctggacgtag cagttaaagt ggcggcaggt acagcaccga
    16861 ttgaatacca gccgagtcaa tataaatgga ttttattaaa tcctgaattg gcggcgattg
    16921 aaatcggcac acaacttgcc aaagcccgtg ttgctgatat gctcaatacg gctattgccg
    16981 gcacggttgc tgcaattagt ggcaatacag caatgacact tgatgaaaag accgccgctc
    17041 cgacattccg cattttaaac aaaggtgcag cgaaaatggg tgatcgtgcc ggttcgctta
    17101 aagcgtgggt gttgcactcc acaaccttac acggcttata cgataatgcc ttaaccaatg
    17161 cggaaaactt attcaagtac gaaaacgtga acgtaattcg tgacccgttt gggcgtgtat
    17221 ttgtcgtcac agacagcccg gctttaatgg cttcagacgg tacatttaac accttaggct
    17281 tggttgaaaa tgcggtggta gtttccggca acaatgactt tgacagcgtg ttagtgccga
    17341 aaaccggcgg agaaaacctt tcagcagttt accaagctga atggacctat aacttaggaa
    17401 tcctaggtta taaatgggat atgaccgctg gtggtaaatc accgaacgat accgccctag
    17461 gcacaccgac gaactgggat aaatcggtta cctccaacaa agacaccgcc ggtgtattgg
    17521 taaaaacgaa gtaattttta accgcttgta gataaggttt acaagcggtt gtttttttat
    17581 ctggagtttg caaatgaaac gaatacttta ttttacaacg gatttttcgg caaaaaacat
    17641 tgcctttgcc aaagctcacg gtgtattaat gcggaatctg aacgcttacc acccatcaga
    17701 caccttagaa aatgcagatg cagtgtgcgg taacgtacct caagcttatc aacatttacc
    17761 gttgtttgaa ttgcctgagt ctaaccaaaa atcaggtcaa gatttgaaaa ccttaaaaac
    17821 cgaagaaatt aaggaaaaac tgactgaatt aggtattgct tttgaggcga atgccaaaaa
    17881 agaaacatta ctaaccttac tcactcaggc ggtgggacgt gacggaacaa acgatgctaa
    17941 atagttatat gacggttgag caagccaacg cctatcacga catcagaatg agccgtgagg
    18001 cgtggaatgc gttaagcgat caagaaaaac agcaacgatt ggtgtcagcg tctgattttc
    18061 tggatttcaa ttatcgtttt tcaggcgaaa aagcagatct tactcaagag cgtgaatttc
    18121 cacgcaaggg ttttgaagct atcggtattc ctaaagccgt gcaatttgcg gtatgtgagt
    18181 tggcattgca agataacttg accgcaaatc aagaagctca aatgagtagc gtaagagttg
    18241 gcccggtttc agttaattat gataacagtt caccgcaaaa cagcgtgaat cggtttgagt
    18301 atgtgaggca gttgctttcc acttggttag atcgatcttc tttcggcacg gttaagttgg
    18361 agcgtagttg atggcggatt tttacggcaa tttagggaaa atctcccatt ctttgattaa
    18421 gcaattcggg cagccttgta gtgtaacaat taacgaacaa ggcagataca accctgcaac
    18481 cggtgagcgg aaaaaaggta gctcaacggt tcacgcaggc tattgtctgt ttgataattt
    18541 ggcgtttgat ttccgcaatc agcaatctgt cagcgttcaa caaggcgatg tgatgattta
    18601 tctcactgcc gattgcaaac cggtattaaa tgctgtgatt gaagcaaacg gcgaaaaatg
    18661 gtcggtcatc aacgtccagc ctatacgccc agcagctacc acgatgattt atcaagtaca
    18721 agggagaaaa gccgatgggt agttttcacg ctcaaatcgc ccgttttgtg gaacaaacgc
    18781 aacaaaaagc ggatagggcg ttaagggtaa ttgccctgca aaccttaagt ggggtgcaga
    18841 agaaatcgcc tgtcgatacc ggacaacttc ggcgtagctg gacggtggca ttaaatggtt
    18901 tcccgagcag ttataacggc agtcaaaccg tgctgaatag tgctaaattc ggcgatatga
    18961 ttgtgattgc taccaataaa ccttatgcac caatgctcga atatgggctt tacccgaacc
    19021 caccaaaaaa accgaccggc aagaccaaaa acggttattc aatacaagca cctaatggaa
    19081 tggtgcgaat taccgtgcag gaaatgcaag cctttatccg caataatcca caattaggag
    19141 taagctgatg cgaccgatta tccgctcggt attagagcaa catcttgccg aactcaatcc
    19201 gtttaatacg gtttgggagg gcatcatcga cagcccgaaa ctgccgtatc aaaccgtatc
    19261 aatgacgact tcaaccaacg aaaccgccac gattggtaat acgccgaaag ccaaacagag
    19321 cggttttttg caggtcacgc tttactatcc gctagatcag gggacaaagg cgattgagga
    19381 acgagccgat gagatcttcc gccacttttt cgggcaggtc tggattgagg aaaatgtgca
    19441 aattctggtg caacagccac cgcttgtagc ctcactttat cgactggata acagcattgc
    19501 cttacccgtc accatctatt ttaccgctta tgaactatag gagaacccaa tgtctattct
    19561 aggcaattca caaggcacaa aacgtacggt cgtttttgcc aaagagagtt ctttcggcac
    19621 gaaagctgct ccgacaggcg caaaaattat gcctcgtgtt gaaacctcac tcaataccaa
    19681 ttttgaaagt tatcaatcgg aagagatcag agatgattta caacgctccg cctctgtgat
    19741 cggctttgaa aaggtcgaag gcgatattaa aggcgaacta gccgccggac aatgggcggc
    19801 attttttgcg gctgcattac gtggttcatt taccgctcag gcgaaaaagc cgattattac
    19861 caaaaccaca gacggcaccg gcgagaaaaa cggtaaaatt ttgattgtgc cgaaaaccag
    19921 ccacacctcc gacagtttca cgctggaaga tgtcttcaaa gacatcaacg tcagccgcca
    19981 gtatttggga tgtcgtgtat cgaaactcag ccttgatgtg caaccaaacg gtattgcctc
    20041 gattacagtc tcatttttag ggcaacgagg cgaagaaagt acaacagcct attttaccaa
    20101 tcccaccgat ttaacccaat ccggcaagct ggcaggggta aaaggctcat tgcaggtcaa
    20161 taaacgccca gtcgggttag tgacggcctt taaactggac attgatttag gggcaagcag
    20221 tgagccggta ttaggggcaa aatacgcccc tgatgtcttt atcggtacag tggcagtgag
    20281 cggatcgttt acgatgtact tccaagacaa gacgatgatt gatgcggtgc gtaacggcac
    20341 agatttatcc cttgctttgc ggatggatgc cgaagagcgt accaataccg actatttaac
    20401 cattatctta ccgggtgtca aagtgacctc aaacgagttg gacgatgggg cgaaaaacat
    20461 tatgcagaca ctcaattttg acgcattccc tgcggtatgg gattcagcaa gccaaatcga
    20521 caacgtgcta aaagtcgcca ccacaatgat tgtgcaagac agcctcgctt aatcgaaatt
    20581 ttgcaaaaaa ataaccgtat ctaaccgctt gccctcaaac aagcggtctt ttttatcccc
    20641 aatttacaaa aggaaaccca aatgaattta aacgcattaa gtaaagaaaa acagttagcc
    20701 gaacaccgtt ttgagctggt tcaccctgtt agtggcgaac cgctcggcgt gtttatgagc
    20761 gtcgtgagtg ctaagagtga taaggctcaa cgctttgccg aaaaacaatt acgccaagaa
    20821 cagatgagag agctggaaaa tgccaaatcc cgcaagccga aattcaaagg cttaggcgat
    20881 atgattgccg aaagtcgtgc aatggcgatt gaccgcttaa ccggctggga gaatgtcgaa
    20941 tggaacgaaa aaccgttgga gttttccgac cagaatgcgg agctactttt aaccgaatgt
    21001 gattggattg tggagcaaat ctttgagcat tcgaacgatc tgggaaagtt cttgaagagc
    21061 taattgatga tttacaggtg tatgcagaga aaacgtttaa gttggataaa aaacttaaag
    21121 gcagcgaaag taccttgcga gagcatttgc aggcaatcga aatgcaaact ggcattacac
    21181 cagaagaatt gcataaccct gaacccagtc cagcggtggc ctatctgctg ggctggttct
    21241 tcgagttggc aatgagccga caatcgggta tgagcttaaa cccaattagc tacactgaaa
    21301 ttgatgcgtg gagcaggctt tttgctcgtc atctcgaaca atgggagatc agcgtaatta
    21361 agcagcttga tatgatttac ttgaacgtac aacaaacgga gtagtatgga tactttcaac
    21421 tttcagccca attgggggct taacgtacag agaaagccag aagtgatgaa aatcgccttt
    21481 ggtgacggtt acgaacaagt cgcccctaaa gggttaaacc ataatctccg cacttattcc
    21541 gctgttttca ccggcacaga agcacggatt aaacagattg aggcattttt tgaacgacaa
    21601 ggcggctata aggcttttct ttggacacct tacggcggga aagaggggaa attccgctgt
    21661 gaagagtggg aggtaagcat aagcagcggg aaatggacgc tgtcggcgac gataagagaa
    21721 gtgttgtagt tttttctgat tttgtgaact ggttcacact ctgtgggttg gatataggtt
    21781 agaatttaag tctaatttgc ttaacggagt cttttatgaa aaaaattttt gtttcagcct
    21841 tattgctcac ttgctcgtta tctgcacttg gaaattcctc gtatgagttg attattgact
    21901 caatgcaaga tcttgaaaag cataaacccg aaattctatc tataccagaa gcggatagaa
    21961 atacttttat tcgttatatg atgcgaaaag aactgcggat aaagttaaat caaggcagat
    22021 tagcggatgg tctaactgtg agagaagcta ttcaaaatca acaggcattt gaaaaagata
    22081 gaaatagcaa aatgcagcag gagaagcaaa aaaaagaaac agagaaagca gaaaaagaaa
    22141 aagctgttac ggattttaac caaaaatttg agctatccat tacaggggcg agaaaggcaa
    22201 aaaatgcact aaatcaagat attttgcttg tttcattaag tctaaaaaat aactcagata
    22261 agccaattat cgctgtacaa ccggatattc aatttgtact gggtgaagat aaacaaacta
    22321 tttcatccat gcgtccaaaa aaatttgaaa acggcattcc gcctaatggc tcagagattt
    22381 ttgagtttgg gtttgattta gatgatatgt ttgctttgaa agcagaaaaa aatatagaga
    22441 aattgagggc agtcttccaa acagcagaag ttctttttgc tgatggaaca actgaaaaac
    22501 ttcaatagta attggtaaat cttcattggc cgcttgtaga aatacaggcg gtttttttat
    22561 tggagcaagc tatggcagat ttagcaacac tggcgattaa aatcgaaaca gaaggcgcaa
    22621 gccgagcaag tgcagatcta agtaaggtcg agcaatctgc aaagaacaca gagaaagccg
    22681 cagataatct gacgcgcgca atgggaaatt tgaagcggat tttagcgatt gcagggctgg
    22741 ctggtgggtt atccgcttac ctagatatgg ctgaaagaat gcagtcgtta aacgcacagc
    22801 ttaaatttgt tactaactct caatacgaat tcaatagcgc acaaaaagag ctttttgcga
    22861 ttgcgcagaa tacgcgcgct agtttggaaa gcaccacgca actttatatt aaatcttctc
    22921 aggcactgaa agattacggc tacgcgcaaa aggatattct cacatttacc gaaaccatta
    22981 acaaagcaat ggcagttggc ggggttaagc cacaagagca agctagtgct ttactccaat
    23041 tatcacaggc attaggttca gggaaactgc aaggagatga attccgttca atttcagaag
    23101 ctgcaccgat tattttagat acgcttgccg agtatatggg taaaagtcgc gatgaagtaa
    23161 gaaaactcgc atccgagggt aagctcaccg cagacttact gttcaatgcg tttaacggtt
    23221 caagcgctaa aattaccgaa aaatttaatc aaatgccgct aacatttggc ggtgcaatgc
    23281 agcagttgca gaatgccaca ttgaaattta tcggtgacct agatagtgca aatggcttga
    23341 gtggaatgtt agctcaagcc attagttttt tagcacagaa ttttgatgtg ttaggcaagg
    23401 ctttgattta tgcaaccggt gcttatattg cgtttaatgc agttgccttt gctcagaatt
    23461 ttgcaaaagc aaccggtggt gtcggtttat taagtagtgc atttggttat ttgactacga
    23521 tgatccgagg tgcaactgtt gcaatgatgg ctaatcctat cgagctttta acaactgcaa
    23581 ttattggggc tgcttttgta tttgatgctt ttatcagtga tatagaggta ggtgcagcaa
    23641 cctttgatgc gacttgggga gatgttgcga cagctgtgtg ggatgatttt aaagatttaa
    23701 cttcagatgc ggcagattgg ttagtcactc aatgggataa agcaaccgcc agtgcagcga
    23761 gttcgttcag ttccttaggt gttgatattg gctcagtatg ggagacggtg caatccatta
    23821 cgaaaacatt gatcaatagt attattggtc tgtttgttgg agcttatcaa gccatcgtgc
    23881 ttgcttggaa taattttcct gccacaatgg aaaacttggg tgtgatggcg gtaaatgctc
    23941 ttgtcgattt ggttcaaaaa ggcatcaata gcattattca gcttatcaaa ttaccgattg
    24001 agcttttaaa cagagcctca tctacttttg gtggaggaaa tctgattgat acatcaggtt
    24061 ggaaggcaag cttagatgat tttaaactaa aggcaagccg cgaggcagaa gttgttggtc
    24121 aatcaattag ccaagcattt gcggatagta tcaccacaga ttacataggc aatgcagtta
    24181 attcagtgag tgactatatt gatggagcgg cagttcgtgg gcgcttaaaa cgtcaattag
    24241 atgaaaccgc ctctgacgat caaggtacgc agtcaccagc taaaaaaaca ttagctggaa
    24301 ataataactc tgctagtgac tggaaaaact acctcaatga acttgaacga gccaatgccg
    24361 atggattagc ccgtattgca cttgagcaag atcgctcaat gcgtgaaatg ttggaaaagg
    24421 cgaagaaagc cggtgcaagt cacgctgaaa ttgaaaaagc caaaatgctg attacagaac
    24481 gttatgctaa agagcgaatg gaaattgccg agaagtatgt gccgagtctg aagtttgagg
    24541 aagaactcaa agatcagatt aaggaaattg atgaactgca aaagttaaac ctgattacca
    24601 ccgagcaagc aggtcttgcg aaagaggcgt tagcaggcaa atatcagccg gtagttgaaa
    24661 tccaacagca atacatcaat caactgagag agattgaagc attaaaacaa gccggtgtat
    24721 taagcaaacc tcaagcagaa gtagcggccg aaaaagccaa atgggacgcc ggcacacaaa
    24781 aagccaaaat cgcaggtaaa aacgccgtta gcccttatga aaaatggaaa tcggaatttg
    24841 acccaatgca ggcaattcaa aatgagcaag cctcaaagtt ggcagaagtg caatcgatgt
    24901 acgatcagca tttgatccaa tatgaggatt ttatcaacgc taaagcacaa attgatgcta
    24961 aggcgactgc tgatactcat caactgttta tgaacagtat tagtgggttt ggttcggcga
    25021 tagatacgat gttaggcgtg atgaaaaacg cagggcaaga gcaatcaggt atttaccgca
    25081 cgatgtttgc gatgtcgaaa gcgtttgcta ttgcggaatc aattctgaac ttgaatcgtg
    25141 caattactca agcaatgagc gatcaaacag ctattacacc ggctcaaaaa tttgcaaata
    25201 tggcggctat tgctagtgcc ggggcgagct tgatttctaa tatccagtca gtctcattag
    25261 gcggtatggc tcacagcggt attgacaatg tgccgaaaga aggcacttgg ttgctggata
    25321 aaggtgagcg tgtagtggat agtcgtacta accaagactt aaaaaccttt ttatccaatg
    25381 ctaatcgtgg cggtgcaagt ggtcaaagat cggcgataaa tgtcaaaatt attaataacg
    25441 ggcaacccgt agaggcgaaa gtcagcagtg aagagactgt agatggcaat atccaaatga
    25501 cggtggaact gctgaagaaa atggatcaaa tcgccgatca acgctaccgt agaaatcagt
    25561 taaatgattt aagaacaggt ggaacattat ctaaataggt gaagtatgcc aattagtatt
    25621 tctaaccaaa tgaaactaga tcttgccaaa cttgagcaaa atgcaatgct ggacttgtac
    25681 gaggttgatt tgcgcaatct caaagataaa agtggtaatg ctggcagagt ttaccgcttt
    25741 tattctgggc taaatgaact caaaacaagt atcgtctggc aagggcggac ttacgatccg
    25801 tatcctattg aggcaagtgg atttgaacga aacagtagcg gcccgagcaa tcgcccgact
    25861 ctcacgctat caaatctgtt tggtttaatt accagtattg cgaatcagtt tgacgaatgt
    25921 atcggtgcga ttgtccgccg gcatcaggtt tatgctcaat atttagatgc cgtgaatttt
    25981 gccgggggta atgcgaaagc tgatccaaat caggaaataa tcagtcattt tgtgattgag
    26041 cagcttacca gcctcacccg agaaacggcg acctttacgc tggcattacc gattgaaacc
    26101 gataatgcca agatccccag cagaattatt atggcggaca cctgcacttg gatttaccgc
    26161 tcggcggaat gtggctacac cggcaagcag tattttgatg aaaaagacaa atcaacctca
    26221 gacccaaaag cagataaatg tagtcattgc cttaatggtt gtgaattaag aggcaatcaa
    26281 cgcaattttg gcgggtttgt atcggtaaat aaattggggt aatgaatgga attggaacaa
    26341 caaataatcg actacgccct ccaacacgaa ccgcacgaaa tgtgcggctt tgttgttttt
    26401 gacggcaata aaaatcgatt tatcccttgc gaaaaccaag cggaagacaa agccaattac
    26461 tttgaaatat ccgatcttga ttacatcaaa gcagaagaaa aaggcgaact ggtagcagta
    26521 gtgcattcgc accctgagcc aaacggcaag ccggtactct ctacccttga tcgcaaaatg
    26581 caggtacaga ccggtttaga ttggtggcta gtgcataatc ggcaaatcca taaattccgc
    26641 aatgtaccac atttaatcgg gcgtgagttt aaacacggca caatggattg ctacacgctc
    26701 taccgtgatg cctatatgct tgccggttac gagatggacg agttcgagcg acaagatgac
    26761 tggtggcata ccgggcaaaa tctatatttg gataatattc aagggcaagg tttcgagcga
    26821 gtagaaaccc cacaaatcgg cgatgtgatt ttaatgcagg ttggagctga tgtacctaac
    26881 cacgcagcga tttatattgg cgaacagatg gtaatccatc acagcccgaa ccgattatct
    26941 aagcgtgatt tatatgatgg ctactggtta cgccataccc acagtatttg gcggcataaa
    27001 ctggcggaga agttagattt tgatggcata ttgaatgata ttgctgtaaa taactaacaa
    27061 aaaatgaccg cttgtaacaa aaacaaaccc cgaagcgttt gcagcacttc ggggtttttc
    27121 atatccactt acctaactaa gaggacataa attaaatgaa tgataaacga tttacattca
    27181 aatttctagg agttcttatg gaagcaatta atattacccc aaaagaaatc agaaaaacaa
    27241 tgtggacagc cgcaataatt ctctttttgt ttgcgttcat ctggaaagcc cctgaattta
    27301 tcactgctat tcgttggtgg taactatgat tacagttaaa ttttacggac atcttagaaa
    27361 attcggtaca gactttagac ttgaagttaa agacaccgca gaagccatca gagcgttatg
    27421 ctcacagctt acaggcttgc gtgaaacgtt gcgagacggt atttataaag tccgcatcgg
    27481 gaaacagtat ttagatgcct cagcccttga aaaagggctt ttttattgcc tgaagaaagg
    27541 gcaaaccatt cattttaccc ctgttatcaa aggggcgaaa agcgggggtg ttttccaagc
    27601 tgtgttaggt gtagccttaa ttggagccgc attttttctc gggccggtcg gttggggagt
    27661 tctaggggct tcttccgcaa tgatgatggg agcaatgggg gcatcaatgt tgcttggagg
    27721 agttgctcaa atgctcacca aaatgccgaa tgccccgaat atcggtaatg aaaaagagaa
    27781 agaaaactca acgtcttttt caaatttaaa taacttggtg gctcaaggca aacctgtgcc
    27841 gttggcttat ggcttaattc ggaccggctc gcttgtgatt tcacagggag ttgagacgat
    27901 gactgtagag gtataattat gggattattt agtcgtaaga gaaaaaatca tactcctaaa
    27961 gaagcaccgg aaaccggtcg ctctaaacag attgtaaata ttgtggaatt gctgtgcgag
    28021 ggcgaaattg aaggcttggt agatggcttt aaatcgattt acttagacgg cacgcagatc
    28081 caaaacgatg acggcaccta taattttaat aatgtgagcg gtcagctaaa tgtcggtacg
    28141 caagatcaag aggtattaga aggttacgac agctcacaaa atgaagtgag tgtgggtgta
    28201 gaagtcaaga aaaaaaacgg tgcaatcgtc cgcaccgtta ctgatgaacg catcagccgt
    28261 ttgcgtttaa cgttgggcgt gcggtcacta ttccgtcaaa ataatcaagg cgataccaat
    28321 accaccaatg ttgatttaaa aatcacgatt ggcacacggc aatattcgca tagctttaac
    28381 ggcaaataca gctcgcaata ccttgaatct gtggtgtttg ataacctgcc gtctgtaccg
    28441 tttaatatct cggttgaacg tgtaacagag gatagcaatt ctcaacgact acaaaacggt
    28501 acaatttgga gcagctatac cgaaattatc gacaccgaat ttacttaccc taattcagcg
    28561 gttgccggta tcagctttga ttcggagtat tttaataata tcccgacccg aaactaccta
    28621 attaaagcga aaaaagtcaa attgccaagc aattatgatc cagttaaacg cacttacacc
    28681 ggcttttggg acggcacatt taaagttgcg tggacgaaca accctgcttg ggaaatttac
    28741 gatttagctc cgattttaag caaaatgctt ggggttgaaa tcagttttga caaatgggcg
    28801 ttgtatgatg tttcccgcta ttgcgatcaa cttgtgccag atggtatggg cggacaagag
    28861 cctcgtttta cctgtaacgt atggctcacg gaagttaaaa ctgcctatga cttgttgaat
    28921 gatttctgct cggtattccg tgcgattccg atttggaccg gcacggaagt ctccgtgatt
    28981 atcgaccgtc ctcgtgatcc ggtttggact tataccaacg ctaatgtagt cagcggtttt
    29041 gaacgctcat attctgcccg caaatctcgc cataatgcgg tacaagtgac ctattcggat
    29101 aaaacgaatg gctatgaaag tgcgattgag tacgtttcag acgatgaaga aatcaaaaag
    29161 cacggcttaa atttaagtca aattactgct ttcggttgta cctctcgggg gcaagcacac
    29221 cgtaccggaa aatggatttt ggaaaccgaa aaacgggaaa aggaaaccat tacttttacc
    29281 gtgggacgtg agggcttaat gcacttgccg ggcgatatta ttcgtgtggc agacagccat
    29341 tatgccggta cggaaattgg cggacgtgta ctggcgatta atgggcgaaa agttaccctt
    29401 gaccgtgaaa ttagcattga taacgccagt tattttacct atatcaacgg tgaggcaacg
    29461 cactctagca aaatccaatc ggtaaacggc aaagaaatta cgctggatag tacaccaacc
    29521 ggcttagaaa cctacggtgt ttggtcgtta tcgactaaac aaatcagctc tggattatat
    29581 cgctcaatct cgattgtcga aaatgcggac ggcacaaaca ctatcacagc gttacaacac
    29641 gaaccgcaga aagaggcaat tgttgataac tccgctcact ttgtggaaac ggctagaaca
    29701 ctctacaaag ctccacaaat taacgcagtg gaagtctcga ccggttatga cggtaagctc
    29761 tacattaccg gtgatattag ctccggtgat ggcaagctaa cctatgatat taaaattacc
    29821 aaagatggca atttatatca atacaaaaaa ggcttaagcg atccgaacat tgaactaagt
    29881 gatttaccta acggcgatta taccgtcatt atttacggca aaaacgccaa agggcaaatc
    29941 gtcaccgaaa aaacacaaac ctttactatt gatcgacctc cagctccgac cggtgtagta
    30001 gtaacaggtg gattagggca aattaccctc gaatgggatt gggtaaatga ggttacgcaa
    30061 accgagattt tcgcggccga aaccgataat ttcgcccttg caaaaaaaat cgcaaaagtg
    30121 accgctagaa cctacgctca cacactaaaa ggtaacaagg ttgtacgcta ttattggcta
    30181 cgtcatacca gaggcattaa tgtcggaccg ttttatcaac aacagggggt aagaggacaa
    30241 acagcggttg atttggatgc tcgattaacc gaattaaaca ctcagttatc acgcaatatt
    30301 gttaatgagg tttttgatgt tgctgcaccg gcaagaggtt tagaattagt gaaaacagtc
    30361 gctaatttga ccgacaaagg tactaaactg gcgtcatctc aagtttacaa tcaggctgac
    30421 ggcaagctct atacttggaa cggtacagca tactcagcta cagtggctgc ggaagatgtt
    30481 accggcaaat tatcaaaatc taaaattgat acgtccctta tttcgcaatt aacaggtgca
    30541 gataacaccg caaatttggc aagaagatta gcggaaacag ctcaaagcaa cattaaccaa
    30601 gagattacta accgacaaga tgccgttact gccgaagcaa ataaccgtac taaagccatt
    30661 caagccgaaa gtgcgaattt aacgaaaaaa attcaagctg aagcaaccgc tcgtggggct
    30721 gctgttacac agttacaaaa tgttgatgct caacaagcac agttgatttc tgctgtcaca
    30781 gcaaaagctg ataatgctct ttcaggcttg gaagaagaaa aaacagcacg agcaaacgcc
    30841 gataaagcgg agtctcaagc acgtgaagca ttaacagcaa gaatgggagc agctgaaagc
    30901 aatatcgtaa ctattcaacg tacggtagca aataatgccc aaagcattag tgaagtcagt
    30961 cagaatttaa atgctaagat tgataatatt aatatcggcg gtcggaattt attaagagac
    31021 agcgagttca atgcgtacaa taaatggggt agcccacaaa ttgaatttgc tgaaaatgca
    31081 aatcgccgaa ctatcaaagt aacctcaaca ggtactaacg gtcctgttgg tattgtttca
    31141 tctaatcgcc attccacatc ttatttccaa caaggagaaa cttatacact ctcattattt
    31201 gctcgaggaa gtaaggcact agactatctc tatctaatgc gtcaagatgg gaataacgtt
    31261 agattaccag tgattaacgt tgcctctgaa actgagttta atcattacaa actcacgttc
    31321 aaggctcctt ttaccacgca acaaggttat gtcttaatcg gttttcggca aaccagcaca
    31381 gagcagtttg ttgagtttca cagcgtcaaa cttgaaaaag gcaacgtagc cacagactgg
    31441 acaccagcac cggaggatgt ggagagtgcg gttagtgctg tttcggctga tttaacgagt
    31501 tataaacaaa ctcaagcggc taccgattca gcacaagcac agcaacttaa tcagttatct
    31561 gtgaacttga ccaaagcaga gactaatttc aacgccaaaa tcacggaaga aaaaaaagct
    31621 cgtgttgatg cagataaagt gaatgcagat aaactcacag acataacaag ccgtgttgca
    31681 aatgcggaat caactattac caatttccaa tcaaccaaag cgaataaaag tgaggtggca
    31741 agtattgccc agcagaactt acagagcatt tggcgcaccg atgcgcaaag tgcggtggat
    31801 gccttgaaaa tcggtggtgc aaatctactg gttgatagtg agtatttgac gacagcccgt
    31861 tggggcggta gctcacgagt ggcaagctcg caatatggtg atcgtcgctt gactcaagtg
    31921 tttgtgaccc aagcaggcac agggcatttt ggtgtgactc aaggcacaca aaaagccact
    31981 acgcgtattc gtcagggtga aacctatacc ttgtcactaa atgcgcaggg gacggcaggt
    32041 tttacccgca cagggttaaa ctatgtgtac cttatccgcg aagatggtgg caattttaga
    32101 ttgccaactt tgccgcttac tgcatcattg tcccaacgcc ctaaagtgac atttactgcg
    32161 ccgtggacga gcaatcaagt tcggttactg attggcgcaa atggcatatt tgaggcgaca
    32221 gactggttcg catttcacag cgttaagctc gaaatgggta atgttgccac aggctggaca
    32281 ccaaccgcca aggatattga cgacaaagta tcagcggttc agtccaacct caccgcttat
    32341 caggcggcac aagctaaagc agatcaagcc aaagctacgc agatttcggg gctcacaacc
    32401 cgaatggggg cagcggaaag taacctcact cgcaccgaac gggcagtgac ggaacttaat
    32461 cagacaacgg tgacgacact gcgtgatcta accgcgcgca ccaaaacaac ggaaggttcg
    32521 ctctctcgtt tggaaaccgc caaagcaagt aaaactgagg tggcaagtat tgctcaaagc
    32581 tccttacagt ca
//
LOCUS       DANLVT010000013        31593 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.013, whole genome shotgun sequence.
ACCESSION   DANLVT010000013 DANLVT010000000
VERSION     DANLVT010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 31593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31593
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.013"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(313..495)
                     /locus_tag="PXC99_000535"
     CDS             complement(313..495)
                     /locus_tag="PXC99_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417017.1"
                     /translation="MYQFGYLRTKIGTDTQRAMLWNCPTYVLIIPFLLNTSVKKQYHA
                     FWQKYHQHNNDVSFPY"
     gene            645..1685
                     /gene="selD"
                     /locus_tag="PXC99_000536"
     CDS             645..1685
                     /gene="selD"
                     /locus_tag="PXC99_000536"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020909986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:690..692,aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HDL5417018.1"
                     /translation="MSEPIKLTQFSHGAGUGCKISPKVLGTILQTQLEQFVDPNLLVG
                     NETADDAAVYDLGNGQAIISTTDFFMPIVDAPFDFGRIAAANAISDIYAMGGKPIMAI
                     AILGFPVNKLPAEVAQQIVEGGRFACQQAGIALAGGHSIDSPDPIFGLAVTGIVPTER
                     VKRNASAVAGCELFLTKPLGIGILTTAEKKGLLKPEHQHLASEVMCQINLIGSAFSEL
                     PEVTAMTDVTGFGLLGHLSEVCQGSGLRAEVDFEDIQVLDGTKEYIALGAVPGGTNRN
                     FDSYGHLISAMTDEQKAILCDPQTSGGLLVAVLPQAVEKVQQIANRANVPLFHVGRLL
                     EMEQGKPRIEVI"
     gene            1685..2158
                     /locus_tag="PXC99_000537"
     CDS             1685..2158
                     /locus_tag="PXC99_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HDL5417019.1"
                     /translation="MFKPNVTMACVVHCKGKFLFVEEIEYGKRTLNQPAGHLEKDETL
                     LEGASRELFEETGIRAEMANLVKIYQWQAPRSQTDFLRFLFSVELEEWLEPNPQDADI
                     TQALWLTLAEFEDYIQQQGQCARSPLVVQSVKDYLSGERYPLSLLNAFEWARNGK"
     gene            2148..3356
                     /gene="ubiH"
                     /locus_tag="PXC99_000538"
                     /gene_synonym="visB"
     CDS             2148..3356
                     /gene="ubiH"
                     /locus_tag="PXC99_000538"
                     /gene_synonym="visB"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-6-methoxyphenyl hydroxylase"
                     /protein_id="HDL5417020.1"
                     /translation="MENKTTTQFDVVIVGGAVTGSVLALALSSFTHHKISIAIVEKSL
                     PDYEQQGGFDARSIALAEGSLQKMGQIRPLAGSSLGEMISEIGTPIQQIQVADKGHFG
                     KTTLKASEQNVAQLGMVVELAKFGRKLTACLAQQANITLFCPNQVVGIERSQQHCGLS
                     LKNGEKLSCSLLVAADGIQSQIAKQCGVETVKVRDYAQSAIIANVELSESHQNQAFEY
                     FTPQGPFALLPLSGNMMSLVWCVKEPNELIQLSDSEFLARLQQQFGWKLGQFVRVSKR
                     FVYPLILQKAQSHIHHRLAVVGNAAQMLHPVAGQGFNLGLRDLTTLAELVALAFNQGK
                     DIGEFSLLSTFENERTQDQARMINATSGLISLFCCEMLPVQVVRNLGLLTVSHSKIAR
                     DFVANQALGW"
     gene            3619..4851
                     /locus_tag="PXC99_000539"
     CDS             3619..4851
                     /locus_tag="PXC99_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-xanthine permease"
                     /protein_id="HDL5417021.1"
                     /translation="MTTENMSTPKQAFIGLQMLFVAFGALVLVPLITGLDPNVALLTA
                     GVGTLIFQICTKRQVPVFLASSFAFIAPIQFGVQQWGIPVTMGALLCSGFIYMALSAL
                     VKAKGVNILHKYFPPIVIGPVIMVIGLGLAPVAVDMATGKSANIAYNTAIIVSMITLV
                     TTLIVAVFAKGLLKLVPILAGLTVGYILSVFMGLVDFTKVVEAPWFSLPKVSAPEFKL
                     DAILYLLPIALAPAVEHLGDVMAISQVAGKDFMKKPGLHRTLLGDGLATSAAAALGGP
                     PNTTYSEVTGAVMLTKNFNPKIMTWAACWAIAFSFCGKIGAFLATIPTFVMGGIMMLL
                     FGAVAVVGINTLIKAKVDLSIPRNLCIASVVMTFGIGGMLINIGEFSLKGISLCALVA
                     IVLNIVLPKEKVEDSAAH"
     gene            4918..5904
                     /locus_tag="PXC99_000540"
     CDS             4918..5904
                     /locus_tag="PXC99_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HDL5417022.1"
                     /translation="MQKLTFSPPLLNTPCPWCSELESLRELYACEYTGAVTTRTSMPQ
                     PYPHDWAKNQYVLFDSNAQKTASVNTQDATSLQTASLNTIGLSPNNLDTTISFVRTIS
                     NELTAPSSKPFIISVFGSPEEVGECYEKIVAFQTEVKMPLAMEINISCPNIPGEISPA
                     YSAEELSHYLHALQTSLKKLAQGDNTLPIGIKIPPFTYQNQYDELIKGLLQAVENGEN
                     LPISFITSTNTLGSSLVLNAGKAVLNSEVGTGVGGMAGTAIHALSLGNVYTIRQMLDQ
                     EPKLKHLQIIGVGGVNDKAGFERMKSVGADFVGLATALGVKGIGVFKEILSE"
     gene            complement(5945..6355)
                     /locus_tag="PXC99_000541"
     CDS             complement(5945..6355)
                     /locus_tag="PXC99_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="HDL5417023.1"
                     /translation="MLYSVLTAHILLNEPYRNGAHSTQHEHLVVMFEIDEESGYFYAM
                     DLHQTEQPVVDSLFVFRVSDIEQNSLKEPRRLEICWSEDGYQAFLLINGYPHAVFDFR
                     QFVGYNHTKFPMPELGSMWVHKETTNELVEKWLG"
     gene            complement(6421..7731)
                     /gene="eno"
                     /locus_tag="PXC99_000542"
     CDS             complement(6421..7731)
                     /gene="eno"
                     /locus_tag="PXC99_000542"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HDL5417024.1"
                     /translation="MAKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGLAAAPSGASTG
                     SREALELRDGDKGRFLGKGVLKAVSAVNNEIANALVGKDGSAQAEIDQIMIDLDGTEN
                     KSKFGANAILAVSLATAKAAAASKGLPLYAYIAELNGTPGVYSMPLPMMNIINGGEHA
                     DNNVDIQEFMIQPVGASTLKEALRIGAEVFHNLAKVLKAKGLNTAVGDEGGFAPNLAS
                     NADALACIKEAVEKAGYVLGKDVTLAMDCASSEFYDKERNVYDMKGEGKTFTSQEFTH
                     YLEGLCKEYPIVSIEDGQDESDWEGFAYQTKVLGDKVQLVGDDLFVTNTKILKNGIEK
                     GIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQ
                     IKTGSMSRSDRVAKYNQLIRIEEALERAGTPAPFNGRKEIKGQA"
     gene            complement(7922..9100)
                     /gene="rlmC"
                     /locus_tag="PXC99_000543"
     CDS             complement(7922..9100)
                     /gene="rlmC"
                     /locus_tag="PXC99_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(747)-C(5))-methyltransferase
                     RlmC"
                     /protein_id="HDL5417025.1"
                     /translation="MSSLLHCSHFERGDCTSCQWIEKPYSTQLAAKEADLKRLILPFI
                     LQNKTEILPLVGSPISQFRNKAKMVVSGSVERPILGILKDQNDAQSGVDLTDCLLYPS
                     SFHRLFPILKDFIARAGLVPYNISKKKGELKYILITESQYNQSFMLRFVVRSEAKRAL
                     VERELPELLEKLPPNSVVSLNIQPQHAALLEGETEIFLTEQKVLEEHFNGIPLFIRPQ
                     GFFQTNPVVASQLYHTAQSWIEHLPIAKLWDLFCGVGGFGLHCANALQAKNSNVELTG
                     IEISASAIASATKSAEKLGLKQVKFASLDSAQFALNEAGSPPDLVIVNPPRRGIGKLL
                     AEFLNQLGSPYLIYSSCNAVSMANDFTFLTNYELHKVQLFDMFAHTAHYETLTFLVKK
                     "
     gene            complement(9093..10130)
                     /gene="nagZ"
                     /locus_tag="PXC99_000544"
     CDS             complement(9093..10130)
                     /gene="nagZ"
                     /locus_tag="PXC99_000544"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HDL5417026.1"
                     /translation="MLLIDIKDKELTQEEVEMLEHPLVSGLILFTRNFYDKAQIQALV
                     KSIRQRVKKPLLITVDQEGGRVQRFREGFTKLPAMQSFNQLATTPEQAMQLAKETGWL
                     MAAEMFALDIDLSFAPVLDLGHECKAIGDRSFGQEPAAILPVAEAFIDGMREIGMATT
                     GKHFPGHGHVLADSHLETPFDDRPKERIFNHDILPFKQLIAKGKLSAIMPAHVVYTQC
                     DSQPASGSSYWLKEVLRKQLNFNGVIFSDDLGMKGAGFMGNFVERSEKAIQAGCDLLL
                     LCNEPEGLVQVLDGLKYQPTQAQKERRLSLMKRKTVTWRELENSSRYQQTQAELTALQ
                     NNWLEWKEANV"
     gene            complement(10256..10987)
                     /locus_tag="PXC99_000545"
     CDS             complement(10256..10987)
                     /locus_tag="PXC99_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HDL5417027.1"
                     /translation="MFDWITNPEAWVALFTLTGLEIVLGIDNIIVISILVSRLPIEQR
                     QSARIIGLGLAMGTRILLLLSLAWMMRLVEPLFTIGNNPISGRDLILLIGGLFLIVKS
                     AMELKESISAESHEEKSESIKKASFFMVLIQIAIFDIIFSLDSVITAVAMADDIPVMV
                     IAIIIAVAVMMLAAKTIGDFVDNNPTIKNLALAFLILIGIVLVGEGFDIHIPKAAVYT
                     AMGFSVVVEMLNIKMRRNQAKLEQA"
     gene            complement(11076..11756)
                     /gene="mutH"
                     /locus_tag="PXC99_000546"
     CDS             complement(11076..11756)
                     /gene="mutH"
                     /locus_tag="PXC99_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutH"
                     /protein_id="HDL5417028.1"
                     /translation="MQLSTFSPTEQALLSKAEWLAGFTLGEIAEMLHIPIPADLKRDK
                     GWVGTLIETALGAKAGSKAEQDFAHLGIELKTIPVNQKGLPLETTFVSLAPLTQNNGI
                     IWETSHVKHKLSRVLWIPVEGERKIPLAERHIGQPILWSPTITQESRLQQDWEELMEL
                     IVLGELHKINATLGEVLQLRPKGRNNRSITSAINAKGEIVQSLPLGFYLRKHFTAEIL
                     QNFLHCPL"
     gene            complement(11848..12483)
                     /gene="lexA"
                     /locus_tag="PXC99_000547"
     CDS             complement(11848..12483)
                     /gene="lexA"
                     /locus_tag="PXC99_000547"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="repressor LexA"
                     /protein_id="HDL5417029.1"
                     /translation="MRKHLTARQQEIFDFVKNHIETTGMPPTRVEIAREIGFKSPNAA
                     EEHLKALARKGYIEMLSGTSRGIRILVEDENQAANDEDEGLPLIGKVAAGTPILAVEH
                     VENHYPVNGAMFNPSADYLLKVNGNSMEKIGILDGDLLAVHKTNTARNGQVVVARVND
                     EVTVKRLEKKGELIYLHPENDELKPIVVNPAQEYIEIEGIAVGVIRSNAWM"
     gene            12650..15085
                     /gene="plsB"
                     /locus_tag="PXC99_000548"
     CDS             12650..15085
                     /gene="plsB"
                     /locus_tag="PXC99_000548"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsB"
                     /protein_id="HDL5417030.1"
                     /translation="MSGLLNFYRAFLNLPLSLLVKSRSIPTHPVAELELNLEQPIVYV
                     LPYTSQTDLLILQKNCLALNLPDPLQENVIEGQTLLRFVFLDEGRRFFKSKGAKSETE
                     SIFYRYLDLHRANAELDVQLVPVSVLWGRAPGKEDARHLQVLTSFQRFLSMVWFGRDN
                     FVRFSPAVSLRYMVTEYGADEKIAQKIARVAKMHFAKLRYSAMGPRLPNRDAMFNKIL
                     NSEVIQAAIAEEAKKSSPEKARKEAEKIINEIAADVKHESLRVADRVLSWLWNKLYQG
                     INVQNADRVRKLALEGHEIVYVPCHRSHMDYLLLSYLLYHQGLVPPHIAAGINLNFWP
                     AGPIFRSWGAFFIRRTFKGNRLYSTIFREYLAELFYRGYSVEYFIEGGRSRTGRLLEP
                     KTGMMSMSLQALQRGLNRSLSIVPVYIGYEHVLEVDTYAKELRGAAKEKENAGLVLRV
                     LKKLKNLGQGYVNFGEPILVNNYLNQYFPEWKEPSEDGRPKWLNEAVDNISHQVMVNI
                     NKAAAVNAKNLVGSALLASRQRALTREQLIEQLGSYIQLFRNVPYSKDMTLPTESAEV
                     MLNHVIHLPRSGVLIEKDNFGELVRLERESAVLMTYYRNNVQHLFVLPSLVASMVLHH
                     EAVSKDVVIKSVNRIYPFLQAELFLHFKQEELKAHIEAIIAELSRQGVIKNESDMLMI
                     NRSHIRTLQLHSAGVREILQRYYISLSVLLEQPNISRGYLEKESSSIAQRLSVLHGIN
                     APEFFDKAIFSTFTSSLKAQGYFDGDDNLAIAKVKETESLLRSLISIEVQQTIQGAMA
                     KVAESVENPNIAG"
     gene            complement(15190..15753)
                     /locus_tag="PXC99_000549"
     CDS             complement(15190..15753)
                     /locus_tag="PXC99_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate uptake transporter"
                     /protein_id="HDL5417031.1"
                     /translation="MSAPNSGTNPAPLGLCGFALTTFLLSLINNGTFSGENVGLVLAM
                     GFAFGGTSQMIAGMFEFAKGNTFGFTAFTSYGAFWWSFALFKVFFAANVSAEFVGWYL
                     VAWGTFTLMMFIGTLAKARALQAIFLSLTITFYLLAAGDFTHNTTLTNIGGNFGLLTA
                     FLAFYLAAADIINESFGKTVLPIGEPK"
     gene            complement(15951..16847)
                     /locus_tag="PXC99_000550"
     CDS             complement(15951..16847)
                     /locus_tag="PXC99_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5417032.1"
                     /translation="MDILDRLLAFAQISAGISVKCQLQGDWQLENPHQTGQAIAHIIS
                     YGQAYLQHNGKTHHLKQGDIVFFPRFADHTLRSQIQPLTSKNAVNPEQLGAFTLTQAG
                     LSQSECDMFCLHFYYDHQAELMESLPEMIVFQVAETPLKAMLDILKQEAETPNLAVKS
                     VVNSLAVVILTMILREHLVNHNNQLFGILKGWQDLHLRPLIKAILLNPEHEWQVDDMA
                     AFIHLSRAQLVRLFNKHLCISPHAFVHKIRLQKAAMLLKSQAGSVLSIALSCGFQSES
                     HFITAFKKQYCVTPSQYRQLNP"
     gene            16983..17324
                     /locus_tag="PXC99_000551"
     CDS             16983..17324
                     /locus_tag="PXC99_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HDL5417033.1"
                     /translation="MSSFQNWTEHTAHVKQSFGKLGQKHPKMLEAYKALGTAAAAEAL
                     DHKTRELIALAVAITTRCESCISVHAEEAAKAGATESEIAGALATAIALNAGAAYTYA
                     LRALEAVEEQK"
     gene            17335..17688
                     /locus_tag="PXC99_000552"
     CDS             17335..17688
                     /locus_tag="PXC99_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDL5417034.1"
                     /translation="MKKLAWILGFAAMMPMMSSAKQASVQQVQAEKAAGIWIDVRSAE
                     EFQQGHLNGAINVTHTEIAQRIAEVAPDKNQPIHLYCRSGHRAEAALNELKKLGYSNV
                     TNHGGYDDLIKAGLK"
     gene            17748..18386
                     /locus_tag="PXC99_000553"
     CDS             17748..18386
                     /locus_tag="PXC99_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005719747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgB family protein"
                     /protein_id="HDL5417035.1"
                     /translation="MSAFNNFVNFVANIVAPMQRQFINFVRIAICIVMVWIGGLKVCQ
                     YEADGIAHFVSNSPFFSYMYKKGPNLVDDGTGKMVMEYTLHKNPEGKMVAKNIEWHKE
                     NGTYTASYIIGATIVTVGLLTLSGIWFPVSGMAGGLLTFGMSIVTLSFMITTPEIWVP
                     NLGGDMPTPAHGFPYLSAVGRLIVKDVIMMAGGLVAAAECANRILARRKAIA"
     gene            18521..19702
                     /gene="purT"
                     /locus_tag="PXC99_000554"
     CDS             18521..19702
                     /gene="purT"
                     /locus_tag="PXC99_000554"
                     /EC_number="2.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent phosphoribosylglycinamide
                     formyltransferase"
                     /protein_id="HDL5417036.1"
                     /translation="MTTIGTPLRTNATKVMMLGSGELGKEVVIELQRLGVEVIAVDRY
                     DNAPAQQVAHRAYTISMLDGNALRDLVEKEKPDFIVPEVEAIATATLVELEQEGYNVI
                     PTAKATQLTMNREGIRRLAAEELGLKTSPYRFVDNFEQFQQAIQEIGIPCVVKPIMSS
                     SGHGQSVIKSEADIQQAWDYSQQGGRAGGGRVIVEGFIKFDYEITQLTVRHIHGTSFL
                     APIGHIQVDGDYRESWQPQQMSDIALKKAQETAEKITSALGGRGIFGVELFVCGDEII
                     FNEVSPRPHDTGIVTMASQELSQFALHARAILGLPIPEIYRISPAASKAIVVEGKSDN
                     VRFGGVDKVLAEIGTNIRLFGKGEVNGHRRLGVILARDENTVRALEKARRAYDKLDIQ
                     L"
     gene            complement(19794..21287)
                     /locus_tag="PXC99_000555"
     CDS             complement(19794..21287)
                     /locus_tag="PXC99_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005556599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HDL5417037.1"
                     /translation="MFKQLQQVGKAFMLPIAILPAAGLLLGIGGALSNKATVQAYPIL
                     DNPTLQGIFQIMASAGSVVFGNLALLLCIGLGIGLAKRDKGVAALAAVVGYLIMTGTI
                     SALIPLFPPETKGIDTGVIGSLVMGLITVKLHNKYHNIQLPQILGFFGGSRFVPIVTA
                     FAAIFVGAVFFLIWPAFQQWLVSAGQGIAEMGEIGTFFYGFLMRLSGAVGLHHMIYPL
                     FWYTELGGTEVVNGETIIGAQKIFFAQLADPTHQGLFTEGTRFFAGRFDTMMFGLPAA
                     CLAMYHAVPKARRGAISGLFLGAALTSFITGITEPIEFMFLFVAPWLYVFHAFLDGVS
                     FYIADLLNISIGNTFSGGVIDFTLFGILQGNENTNWLRVIIVGLPWAALYYFSFLFLI
                     KKFNVMTPGRAEESEEVVEQQTSSLTENAHKIIAALGSANNIENVDACITRLRVAVKE
                     VKAVDKATLKKLGAIDVLEVGGGVQAVFGAKAVLYKSEVNQILGKED"
     gene            21488..23335
                     /gene="ilvD"
                     /locus_tag="PXC99_000556"
     CDS             21488..23335
                     /gene="ilvD"
                     /locus_tag="PXC99_000556"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012055207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HDL5417038.1"
                     /translation="MPILRSATSTQGRNMAGARALWRATGMKENDFGKPIIAVVNSFT
                     QFVPGHVHLKDMGQLVAAEIEKAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRDLIAD
                     SVEYMVNAHCADAMVCISNCDKITPGMLMAAMRLNIPTIFVSGGPMEAGKTKLSDQLI
                     RLDLVDAMIESADPNVSDERIDAIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGN
                     GSMLATHADRKELFLRAGREIVELCRKYYQQDDESVLPRSIATFDAFENAMSLDIAMG
                     GSSNTVLHLLATAQEAGVDFKMEDIDRLSRVVPCLSKIAPNTNKYHMEDVHRAGGIMG
                     LLGELDRAGLIHRHVKTVLGLTIEEQLNQYDIIRNKDEDLHKFFRAGPAGIRTTKAFS
                     QDCRWDTVDDDRVNGCIRNVENAVTKEGGLAVLFGNIAEDGCIVKTAGVDESIWKFTG
                     TAIVFESQEDAVAGILGGKVKEGHIVIIRYEGPKGGPGMQEMLYPTSYLKSMGLGKKC
                     ALLTDGRFSGGTSGLSIGHASPEAASGGAIALINDGDTVAIDIPNRSINLMVSDEELA
                     ARRAEMEARGDKAWQPLKREREVSFALKVFGHFATSADKGAVRDKSLLK"
     gene            complement(23469..23819)
                     /locus_tag="PXC99_000557"
     CDS             complement(23469..23819)
                     /locus_tag="PXC99_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TusE/DsrC/DsvC family sulfur relay protein"
                     /protein_id="HDL5417039.1"
                     /translation="MWHFYLMTIELNNIQYPTDASGYLTNLNDWSVELAEKIAEKEQI
                     SLTAEHWEIIYLVRDFYQEYKTSPAIRMLVKTMAQKFGEEKGNSRYLQRLFPDGPAKQ
                     ATKIAGLPKPAKCL"
     gene            complement(23848..24513)
                     /locus_tag="PXC99_000558"
     CDS             complement(23848..24513)
                     /locus_tag="PXC99_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BAX inhibitor protein"
                     /protein_id="HDL5417040.1"
                     /translation="MENRLAHSYSTGESLISTHKVLRNTYMLLAMTLTFSAVVAFVAI
                     QMNAPAMPWWGLLVGFYGLLFLTNATSNSSAGILSVFALTGFLGYTLGPILNRYIGAG
                     LGDIVALAFGATALVFFACSAYVLTTKKDMSFISGMMVALFVVLLVGIIANIFLAIPA
                     LSLALSSLFVIFSSGAILLATSNIIHGGETNYIRATVDLYVSIYNLFVSFLQIFGVLG
                     SDD"
     gene            24719..25267
                     /gene="pgsA"
                     /locus_tag="PXC99_000559"
     CDS             24719..25267
                     /gene="pgsA"
                     /locus_tag="PXC99_000559"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HDL5417041.1"
                     /translation="MKLNFPTYLTLFRVGLTPLFIVAFYLPTKYAPEISTLIFFIASI
                     TDAFDGYLARKWNQTTRLGAFLDPVADKVLVAVAFVCVAEYYHTWWITIPICIMIARE
                     IIISALREWMAELGERASVAVSIWGKVKTTAQMLALGGMLWRQNQLMEILAFILLYIA
                     VGLTIWSMMQYLNASKNSLLKS"
     gene            25345..27183
                     /gene="uvrC"
                     /locus_tag="PXC99_000560"
     CDS             25345..27183
                     /gene="uvrC"
                     /locus_tag="PXC99_000560"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HDL5417042.1"
                     /translation="MSEFNAKSFLLNVPHQPGVYRMYDSKGTIIYVGKAKDLKKRLAS
                     YFRSQLSSKKTEALVANLANIETTITHSETEALLLEHNYIKENQPKYNVLLRDDKSYP
                     YILLTKHKHPRLTAFRGSKKIAGEYFGPYPNVTAVRETLNLLQKIFPIRQCEDTYYKN
                     RSRPCLQYQIGRCLAPCVEGCYSPVEYDQQVNLVRLFLQGKDHQVVEHLVQKMEDAAE
                     ALDFEGAARFRDQIQSVRAVQEKQFVSNDRLDDLDIISIVYQNGIACVHILFVRQGKV
                     LGNRSYFPKVPSNTDLTELADTFVGQFYLQMNQHRTIPNQIVIDHQLSESKALSEILS
                     EQAGHKVSILDNAIRGDKQRYLALARTNAMAALVLQLKQESHIQSRYQALKEMLKMSE
                     IKRMECFDISHTMGNQTVASCVVFDENGPLKSDYRRFNIEGITGGDDYAAMEQALLKR
                     YNRELPPEKIPDIIFIDGGKGQLNRALDVFAKLDVEWDKSKPLLIGVAKGVERKAGLE
                     TLIISKWDKEIHLPPDSLALHLIQHIRDESHQHAISGHRKKRQKAFTESGLESIAGVG
                     AKRRQALLKYLGGMQGVKSATLEEIQSVPGISKALAEVIFDTLKNS"
     gene            complement(27188..27463)
                     /locus_tag="PXC99_000561"
     CDS             complement(27188..27463)
                     /locus_tag="PXC99_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417043.1"
                     /translation="MKKLILLGLSVALTACSTPQQQSTVPMDMQAVQDYHQRVINKQT
                     VDKNTKQHDEPLNQSDKRSESINLPIHPIIYPSIGVGYHYGWKRYRY"
     gene            complement(27588..27941)
                     /gene="rplT"
                     /locus_tag="PXC99_000562"
     CDS             complement(27588..27941)
                     /gene="rplT"
                     /locus_tag="PXC99_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009635878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HDL5417044.1"
                     /translation="MARVKRGVIARARHKKVLKAAKGYYGARSRVYRVAFQAVVKAAQ
                     YAYRDRRQRKRQFRQLWIARINAAARQNGLSYSKFINGLKKASVEIDRKILADIAVFD
                     KVAFAALVEKAKSAL"
     gene            complement(28050..28247)
                     /gene="rpmI"
                     /locus_tag="PXC99_000563"
     CDS             complement(28050..28247)
                     /gene="rpmI"
                     /locus_tag="PXC99_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HDL5417045.1"
                     /translation="MPKIKTVRGAAKRFKKTASGGFKRKQSHLRHILTKKTTKRKRQL
                     RHKSMVAKADQVLVVACLPYA"
     gene            complement(28511..29053)
                     /gene="infC"
                     /locus_tag="PXC99_000564"
     CDS             complement(28511..29053)
                     /gene="infC"
                     /locus_tag="PXC99_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015871208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HDL5417046.1"
                     /translation="MKPVKRVQSNRAHRLNDEIRGVKEVRLTDENGEQVGIVSLQDAL
                     NRAEEAELDLVEISPNAEPPVCRIMNYGKFIYEKEKAAKEQKKKQKVVQVKEIKFRPG
                     TDDGDYQVKLRSIIRFLEDGDKVKITVRFRGREMAHQEIGMDVLERVKADTAEIAMVE
                     SAPGKLEGRQVVMVIAPKKK"
     gene            complement(29212..31011)
                     /gene="recQ"
                     /locus_tag="PXC99_000565"
     CDS             complement(29212..31011)
                     /gene="recQ"
                     /locus_tag="PXC99_000565"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HDL5417047.1"
                     /translation="MNTTAISVLNNIFGYQKFRDGQEEVINAVLENRDCLVIMTTGGG
                     KSLCYQVPALCLDGITLVISPLISLMKDQVDQLITNGIEAAYLNSTQTLEEQQLVEQK
                     ALSGQLKLLYLSPEKVMTQGFFHFISLCKISFIAVDEAHCVSQWGHDFRPEYTLLGGL
                     RNTFPNVPLMALTATADLTTRSDILHHLRLNSPHIYLGSFDRPNIRYTVQEKFKPLEQ
                     LIKFISKQQGKSGIVYCNSRKKVEEITEKLSARKISVMGYHAGMSFEQRERVQNAFQR
                     DDIQIVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDP
                     SDYAWLQKILLEEPESEQRNIKQHKLQAIGDFAESQTCRRLVLLNYFGEHRQEQCKNC
                     DICLDPPQQYDGLLDAQKVMSVIYRTGQIFGQHHIIAVLRGMNNLKIREHQHDQLSVY
                     GIGKEQSQHYWQNVVRQLIHLGLIIQNIANHSALQLTESARPFLRGEKQLQLALPRLG
                     ISATAFVQKQASHRYDKDLFARLRFLRKQIADLENIPPYIVFNDATLQEMAEFLPTSK
                     VEMLEINGVGERKFERFGQAFMSLIKEYQNNRK"
     gene            complement(31120..31425)
                     /gene="cyaY"
                     /locus_tag="PXC99_000566"
     CDS             complement(31120..31425)
                     /gene="cyaY"
                     /locus_tag="PXC99_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HDL5417048.1"
                     /translation="MNTAQFHQAVEQVWQQIEEKIYDEGLSVDTEIQGAVCTLTFDDE
                     SQVIINKQEAMLELWLASKLGGFHFKNVEGEWVTDEGRSFWQHLEEAFARHGESVSF"
BASE COUNT         9052 a         6165 c         6959 g         9417 t
ORIGIN      
        1 aggaaaaatg tgctgtggca gaacaccgat ggcaacctta cttgatggaa aacggatttg
       61 ggtggaaaag aatttaagct caaattaatc tgacagacac ggtaatttaa aacgggagac
      121 tgtcagatca agtctgatct tctacaacta agccttctca gaataaataa attttcacaa
      181 gcggtgcaac tttgcaaaaa cttcggtatt atgtagcagt tgcacaaaac cccaaattca
      241 ttaaaaccgc ttaaaaatga aatgccctaa actgattttt cagtctaggg catttattat
      301 cacatattat ggttaatagg gaaaactcac atcattgtta tgctggtgat atttttgcca
      361 aaatgcgtga tattgttttt tcaccgatgt gtttaataaa aacgggatta tcaagacata
      421 ggtcgggcaa ttccatagca ttgcacgttg tgtatccgtg ccgattttgg tgcgtaagta
      481 accaaactga tacattagac ccaatccaac cgtcacctat tctaatagca taataactaa
      541 ggtcgcatca ttaaattaaa agctcatttt ttgcaaaaaa tttcccaaat tccaccgctt
      601 gttggcgtac aataggcata attttgattt acgatggagg cagaatgtct gaaccgataa
      661 aacttacgca gttcagccac ggggcgggtt gaggctgtaa aatttcgcct aaggtgttag
      721 ggacaatttt acaaactcaa ttagaacaat ttgtcgatcc gaatttattg gtaggcaatg
      781 aaacggcgga cgatgctgcc gtctatgatt tagggaacgg gcaggccatt atcagcacca
      841 ccgatttctt tatgccgatt gtggacgccc cgtttgattt cgggcgaatt gctgctgcca
      901 atgcgattag cgatatttat gcgatgggtg gcaagccgat tatggcgatt gcgattctgg
      961 gctttccggt gaataaattg ccggctgaag tggctcaaca aattgtcgaa ggtgggcgtt
     1021 ttgcgtgcca gcaagccggt attgccttgg cgggcgggca ttcgattgat tcgcccgatc
     1081 cgattttcgg cttggctgtt accggcattg tgccgaccga acgggtgaaa cgcaatgcct
     1141 ctgcggtggc tgggtgtgag ctgtttttaa ccaagccttt ggggattggc attctaacca
     1201 cggcagagaa aaaaggtttg ttgaagcctg aacatcaaca tctggcaagc gaggtaatgt
     1261 gccaaatcaa cttgattggt tcagcgtttt ccgaactgcc tgaagtcacg gcaatgactg
     1321 atgtaaccgg ttttggctta ctcgggcatt taagcgaggt gtgtcaaggc tcgggcttac
     1381 gggcggaggt tgattttgag gatattcaag tccttgatgg cactaaggag tatattgcat
     1441 tgggagcagt tccgggtggg acaaatcgca atttcgacag ctatgggcat ttgatttcgg
     1501 caatgacgga cgagcaaaaa gcgattttgt gcgatccgca aacctctggc ggtttattag
     1561 tggcggtgct gccacaagcg gtcgaaaaag tgcaacaaat tgcaaatcgg gcaaatgtgc
     1621 cgttattcca cgttggcaga ttgctggaaa tggaacaggg caaaccacgg attgaggtaa
     1681 tttgatgttt aaaccaaatg taacaatggc ttgcgtggtg cattgtaagg gaaagtttct
     1741 gtttgtggaa gaaattgaat atggcaaacg tacccttaac cagccggcag ggcatttaga
     1801 aaaagatgaa accttgctgg agggggcaag ccgtgagctg tttgaggaaa ccggtattcg
     1861 ggcagaaatg gcaaatttgg tgaaaattta tcaatggcaa gcccctcgtt cacaaaccga
     1921 tttcttgcgt tttctgtttt cggtggaact ggaagagtgg ctggagccga atccgcaaga
     1981 tgcggatatt acccaagccc tttggcttac tttagcagaa tttgaagact acattcagca
     2041 acaagggcaa tgtgccagaa gcccgttggt ggttcaatcg gtcaaagatt atttaagcgg
     2101 tgagcgttat ccattaagtt tgttgaatgc gtttgaatgg gcgagaaatg gaaaataaaa
     2161 caacaaccca atttgatgtg gtgattgtgg gcggggcagt gaccggctcg gtgctggcat
     2221 tggcgttaag tagttttact catcacaaaa tctcgattgc gatagtggaa aaatcgctgc
     2281 cggactatga acagcaaggc ggttttgatg ctcgcagtat tgccttagcc gaaggcagtt
     2341 tgcaaaaaat ggggcaaatc agaccgcttg caggctcaag tttaggcgag atgattagcg
     2401 aaatcggcac gccgattcag caaattcaag tagcggataa agggcatttt ggtaaaacga
     2461 ccttgaaagc aagcgagcag aatgtggctc aactgggtat ggtggtggaa cttgcaaaat
     2521 tcggcagaaa attgaccgct tgtcttgcac agcaagctaa tattacgctt ttttgcccga
     2581 atcaagtggt tggcattgag cgttcccaac aacattgtgg attgagcttg aaaaatggtg
     2641 agaaactaag ctgttccttg ctggtggcgg cagatggtat tcaatctcag attgcaaaac
     2701 agtgcggtgt ggaaaccgta aaagtaaggg attatgcaca atcggcaatt atcgccaatg
     2761 tggaactgag tgaatctcac caaaatcaag cctttgaata ttttacgcct caaggccctt
     2821 ttgctttatt gcctttgagc ggaaatatga tgtcgttggt gtggtgtgtg aaagagccga
     2881 acgagttaat ccaactttca gacagtgaat ttttagcccg tttgcaacaa caatttggtt
     2941 ggaagttagg gcaatttgtt cgagtgagca agcggtttgt ttatccgctc attttgcaaa
     3001 aagcccagtc gcatattcac caccgcttag cagttgtcgg caatgccgca caaatgcttc
     3061 acccggttgc tgggcaaggt ttcaacttag gcttgcgtga tttgactacc ttagcggaat
     3121 tagtggcttt ggcgtttaat caagggaaag atataggcga attttcgctc ttatcaactt
     3181 ttgagaatga gagaacgcaa gatcaagcca gaatgataaa tgctacaagc ggtctgattt
     3241 cgcttttttg ttgcgaaatg ttaccagttc aggttgtgag gaatttaggg ttattaacgg
     3301 tttcccattc aaaaatagcc agagattttg ttgctaatca ggcattaggt tggtaaaaaa
     3361 cacaaaagca gcaattttct atttgacact gtttttaaaa aggcgtatta tccaacccgt
     3421 ttaaaaatct caccaaagcc ttgaatgcaa attcaaggct ttttcctttt tagtgaaagc
     3481 ctatgaattt tgtttgccgt aaaatcggca aaaaaatttt gcctaaaatt cgcaatcgtt
     3541 tgcgaaatag gtttatagcg ttgttttcat ctgggtaact gcaatggtta catcgcaata
     3601 catcaaagag agtaaaaaat gaccacagaa aatatgagta cgccaaagca ggcgtttatc
     3661 gggctgcaaa tgctgtttgt tgcatttggg gcgttagtat tagttccgct gattaccggt
     3721 ttagatccta atgttgccct tcttaccgcc ggtgtcggta cgttaatctt ccaaatttgt
     3781 actaaacgtc aagttcctgt tttcctcgca tcgagtttcg cttttatcgc tccaatccaa
     3841 ttcggtgttc aacaatgggg aattcccgtc acaatgggag cattgctctg ttccggtttt
     3901 atttatatgg cattatctgc tttagtgaaa gcgaaagggg tgaatattct gcataaatac
     3961 ttccctccaa tcgtgattgg accggtaatt atggtgattg gtttaggtct tgctcctgtt
     4021 gcggtggata tggcaacggg taaatcggcg aatattgcct ataacaccgc tattattgtt
     4081 tcaatgataa cgctggtaac tacgctgatt gtggcggtgt ttgcgaaagg gctattaaag
     4141 ctcgtgccaa tattagcagg tttaacggtg ggatatatct tgtctgtttt tatgggattg
     4201 gtggatttta ctaaagtggt tgaagctcct tggtttagtc taccgaaagt ttccgcaccg
     4261 gaattcaaat tagatgcaat cttgtattta ttacctatcg cacttgctcc ggcagtcgaa
     4321 cacttaggcg atgtaatggc aatcagccaa gttgccggta aagattttat gaaaaaaccg
     4381 gggttacacc gcacgctttt aggtgatggt ttagcaactt cagcagctgc ggcattaggt
     4441 ggcccaccaa atacgactta ctctgaagta accggtgcgg taatgctaac caaaaacttc
     4501 aatccgaaaa ttatgacttg ggctgcgtgc tgggctatcg ctttctcatt ctgcggaaaa
     4561 atcggggcat tccttgccac tatccctact tttgtgatgg gcggtattat gatgttgctg
     4621 ttcggtgcag ttgcggttgt ggggatcaat actctaatta aagctaaagt tgatttaagc
     4681 attccacgta atctttgtat tgcttctgta gtaatgacat tcggtattgg cggtatgtta
     4741 attaacatcg gcgaattctc attaaaaggg atcagcttgt gtgcattagt cgctattgta
     4801 cttaacattg tattaccaaa agaaaaagta gaagattctg ctgctcatta atcaaaggac
     4861 gctgtggcgt cctttttgct aataaccctc tatttgtaaa taaaaaggaa taacactatg
     4921 caaaaactca cattttcacc accactttta aatacgcctt gcccttggtg ttcggagtta
     4981 gagagcttgc gtgaacttta tgcgtgtgaa tataccggtg cggtaacaac ccgtacttca
     5041 atgcctcaac catatccaca cgattgggcg aagaaccaat atgtactctt tgattccaac
     5101 gcacagaaaa cagcaagtgt gaatactcaa gatgcaacta gcttacaaac agcaagcctt
     5161 aacaccatcg gtttaagccc aaataatctg gataccacca tcagctttgt acgcaccatt
     5221 tcaaatgagc tgacagcgcc atcaagcaaa ccatttatta tttcggtgtt tggttcaccc
     5281 gaagaggtgg gggaatgtta tgaaaaaatt gttgctttcc aaactgaagt gaaaatgcct
     5341 ttggcaatgg agattaatat ctcttgcccg aatattccgg gtgaaatttc gcctgcttat
     5401 tccgcagaag aattatcaca ttacttgcac gcactacaaa cttcgctaaa aaaactggct
     5461 caaggtgata atactttacc aatcgggatt aaaattccac cttttactta ccaaaatcaa
     5521 tatgatgaat taatcaaagg cttattacaa gcggtcgaaa atggcgaaaa tttaccaatt
     5581 tcctttatta cttcaaccaa tacgcttggc tcatcgcttg tcttaaatgc tggcaaagcg
     5641 gtattaaatt cagaagtggg aacgggcgta ggcggaatgg caggaacggc aatccatgca
     5701 ctttctttgg ggaatgttta cacgattcgc caaatgttag atcaagagcc taagctcaaa
     5761 catcttcaaa ttattggtgt gggcggcgtg aatgataaag ccggctttga gcgaatgaaa
     5821 tcggttgggg cagactttgt ggggttagct accgcattag gggtgaaagg aatcggcgtt
     5881 tttaaagaga ttctgtctga ataatgaaga ggagggcgtg cattgcacgc ccgaataaat
     5941 gaaattagcc taaccatttc tccactaatt cattagtggt ttctttatgt acccacatac
     6001 tgccaagttc cggcattggg aatttggtgt ggttgtagcc gacaaattgg cggaaatcaa
     6061 acacggcgtg cgggtagccg ttgatcagta aaaaggcttg atagccgtct tcactccagc
     6121 aaatttctaa acggcgaggt tcttttaatg aattttgctc aatatcgctg acccgaaaca
     6181 caaataaact atccactacc ggctgttcgg tttggtgtaa gtccattgca taaaagtagc
     6241 cgctttcttc atcaatttca aacatcacta ctaaatgttc gtgctgggtt gaatgagcgc
     6301 cattacggta aggttcgttc agtagaatat gagcagttaa aacagagtag agcattaaat
     6361 tatccttata agtaaaatgc caccgatttc tcagtggcat ttaaatattt aatcaggcaa
     6421 ttacgcttga cctttaatct ctttacggcc gttgaacgga gccggtgtac cagcacgctc
     6481 taacgcttct tcgatacgga ttaactggtt gtatttcgct acacggtctg aacggctcat
     6541 tgaaccggtt ttgatttgac ctgctgctgt acctactgct aaatctgcaa tggttgcatc
     6601 ttcagtttcg cctgaacggt gagagataac tgcggtgtaa cctgcatctt tcgccatttt
     6661 gattgcagct aaagtttcag ttaaagaacc gatttggttg aatttgatta agattgagtt
     6721 tgcgatacct ttctcaatac cgtttttcaa gattttggta ttggttacga ataagtcatc
     6781 accaactaat tgtactttgt cgcctaatac tttagtttgg tatgcgaaac cttcccagtc
     6841 agattcgtct tgaccatctt cgatagacac gattgggtac tctttgcata agccttctaa
     6901 gtagtgagtg aactcttgtg aagtaaaggt tttgccttcg cctttcatat cgtacacatt
     6961 gcgttctttg tcgtagaatt cagatgatgc acagtccatc gctaaagtta cgtctttacc
     7021 taacacatag cctgcttttt ctaccgcttc tttaatgcac gctaatgcgt ctgcgtttga
     7081 agccaagttt ggtgcgaaac caccttcgtc acctacagca gtatttaagc ctttcgcttt
     7141 taatactttt gcaagattgt ggaatacttc agcaccgata cgaagagctt cttttaatgt
     7201 agaagcacct accggttgaa tcataaattc ttgaatgtcc acgttgttgt cagcgtgttc
     7261 accaccattg atgatgttca tcattggtaa tggcattgag taaacacccg gtgtgccgtt
     7321 taattcagca atgtatgcgt aaagcggtaa gccttttgaa gcggctgctg cttttgctgt
     7381 tgctaaagaa accgctaaga tagcgtttgc accgaatttt gatttgtttt ctgtgccatc
     7441 taaatcgatc ataatttggt cgatttcagc ttgtgcagaa ccgtctttgc ctactaatgc
     7501 gtttgcaatt tcgttattta cggcagaaac cgcttttaat acacctttac ctaagaaacg
     7561 acctttgtcg ccatcacgta attctaatgc ttcacgtgaa ccggtagaag cacctgatgg
     7621 agcggctgct aagcctacaa aaccaccttc taagtgaact tctgcttcta cagttgggtt
     7681 accacgagag tcgatgattt cacgaccgat tactttaaca attttagcca ttgttgatgt
     7741 cctctaatat acgagttaat agaaaaaaga ataggtatat agtaaagcga ttttctgctt
     7801 ttgtcttgga aaaactgatt gagtggcaga aaatttgcca ctaatttgat ctaagactat
     7861 attcgcctga gattatagca acctttgcaa aaaacggcaa aaatttgccc gcttgtaatg
     7921 cttatttttt gactaaaaaa gtcaaggttt cataatgtgc tgtgtgagca aacatatcaa
     7981 acagctgcac tttgtgtagt tcgtaatttg tcaaaaatgt aaaatcgttc gccattgaga
     8041 cggcattaca actggagtaa atcaaataag gtgagcctaa ttgatttaaa aattctgcta
     8101 atagtttgcc gataccacgt cgaggtgggt tcacaatcac taaatcgggt ggagaaccag
     8161 cttcatttaa agcaaattgt gcagaatcta atgaggcaaa ttttacctgc tttaggccga
     8221 gtttttcagc cgatttggtc gcacttgcaa tagctgaggc tgaaatctca atgcctgtca
     8281 gctccacgtt cgagttcttc gcttgcaagg cgttggcaca atgtaagccg aaaccaccga
     8341 caccgcagaa caagtcccac aatttagcaa taggtaaatg ctcaatccag ctttgtgctg
     8401 tgtggtaaag ctggcttgct accacagggt tagtttggaa aaagccctga gggcgaataa
     8461 atagcggtat gccgttaaaa tgttcttcca gcactttttg ttcggtgagg aaaatctcag
     8521 tttcgccttc taaaagagca gcgtgttggg gctgaatatt cagactaact actgagttgg
     8581 gtggcagttt ttccaacagt tcgggcaatt cccgttcaac caatgcacgc tttgcttcac
     8641 tacgaaccac aaaacggagc ataaatgatt gattatattg gctttcggta atcagaatat
     8701 attttagctc accttttttc ttactgatgt tatacggcac taaaccagct cgagcgataa
     8761 aatctttcaa aatcggaaaa agtctatgaa atgaggacgg gtagagcaga cagtcggtta
     8821 aatccacccc gctttgagca tcattttgat cttttaaaat gcctaaaatc gggcgttcta
     8881 cactgccgga gaccaccatt ttcgctttgt tacgaaattg cgaaattggc gagccgacaa
     8941 gcggtaagat ttccgtttta ttttgcaaaa taaacggcaa aatcaaccgc ttgagatcgg
     9001 cctctttggc ggctaattgc gtgctgtatg gcttttcaat ccactggcac gaagtacagt
     9061 cgccacgctc aaaatgcgaa caatgcaaca agctagacat tcgcttcctt ccattccagc
     9121 cagttgtttt gtaaggccgt taattcagcc tgagtttgtt ggtagcgaga gctgttttcc
     9181 agctctcgcc aagtcacggt tttgcgtttc attaaagaaa ggcgacgttc tttttgtgct
     9241 tgagtcggct gatatttcag cccgtctaac acttgcacca ggccttcagg ctcgttacaa
     9301 aggagcaata aatcacagcc ggcttggatt gctttttcag aacgctcgac aaaattgccc
     9361 ataaagcccg cacctttcat tcccaaatcg tcagagaata tcacaccgtt aaagttcagc
     9421 tgtttacgca atacctcttt aagccaatag cttgaaccgc ttgccggctg gctatcacat
     9481 tgggtgtaaa cgacgtgggc aggcataatg gcagagagtt ttcctttggc aataagctgt
     9541 ttgaacggca gaatatcgtg attaaaaatc cgctctttcg ggcgatcatc aaacggggtt
     9601 tctaaatgcg aatcggctaa aacgtgtcca tgaccgggga agtgtttgcc ggtggtcgcc
     9661 ataccgattt cacgcattcc gtcaataaag gcttcggcaa caggcaaaat cgctgctggc
     9721 tcttgcccga atgagcgatc gccaatcgct ttgcattcgt gtcctaaatc cagtaccgga
     9781 gcgaaactga ggtctatatc gagggcaaac atttctgctg ccatcaacca gccggtttct
     9841 ttcgctaatt gcattgcttg ctctggcgtt gtggcaagtt ggttaaaaga ttgcattgcc
     9901 ggcagtttag taaagccttc acgaaagcgt tgcacccgac cgccttcttg gtcgacagta
     9961 ataagcaacg gttttttcac ccgctggcga atggatttca ctaatgcctg aatttgtgct
    10021 ttgtcgtaga aattacgggt gaataaaatt agcccggaaa ctaaagggtg ttccagcatt
    10081 tcgacttctt cttgagtcag ttctttatct ttaatatcaa tcagtaacat aattttcgtt
    10141 gagctatttg caaaaaaatg agcagatatg accgcttgtt gtgcctattc tacattaaaa
    10201 agcccttgat gttgatcaag ggcgaatgat taagggcata aatgagacag agcaattatg
    10261 cttgttctaa tttagcttgg ttacgacgca tttttatgtt gagcatttca accacaaccg
    10321 agaagcccat tgccgtataa accgctgctt ttggaatatg aatatcaaaa ccttcgccga
    10381 ctagtacaat accgattaaa atcaagaacg ctaaagcgag atttttaatg gttgggttgt
    10441 tatctacaaa gtccccaatg gttttcgctg ctaacatcat taccgcaact gcaatgataa
    10501 tcgcaataac cattaccgga atatcatctg ccattgccac agcagtaatg actgaatcaa
    10561 gggagaaaat aatatcaaaa attgcaattt gaattaacac cataaaaaag ctggcttttt
    10621 taatggattc gcttttttct tcgtgagatt cggcagaaat ggattctttc agctccattg
    10681 cacttttaac aatcaggaat aatccaccga tgagtagaat gagatctcta cctgaaattg
    10741 gattgttgcc aatagtgaaa agaggctcga ccaaacgcat catccaagca agcgagagaa
    10801 gcaataaaat acgggttccc attgccagcc ccaagccgat aattcgggca gattggcgtt
    10861 gttcaatagg taaacgggaa acgagaatac tgatgacgat gatgttatca atgcctaata
    10921 cgatttcaag cccggtaagt gtaaagagcg caacccaagc ttcaggattt gtgatccagt
    10981 caaacataaa aatgtccttt taaaaataag ggattaagtg atattttcta tcaaatagaa
    11041 ttaaagccga catcttatag agtgtgagga caaatttaaa gggggcaatg caaaaagttt
    11101 tgtaaaattt cggcggtaaa atgtttacgc aaatagaaac caagagggag agattgaaca
    11161 atctcccctt tagcgttgat agcagaggtg atagagcggt tatttctacc tttgggtctg
    11221 agttgtaaca cttcgcctaa ggttgcatta attttatgca gttcacctaa cacaatcaac
    11281 tccattaatt cctcccaatc ttgctgtagg cgggattctt gtgtgatagt cggagaccat
    11341 aaaatcggct gaccgatatg gcgttcggca aggggtatct ttcgttcccc ttcaaccgga
    11401 atccaaagca cacgggaaag cttatgttta acgtgggagg tttcccaaat aataccgttg
    11461 ttttgggtta aaggagcaag gctgacgaat gtggtttcca gcggtaatcc tttctgattg
    11521 accggaatgg ttttcagctc aatgcctaaa tgtgcaaaat cctgttcggc tttactgccg
    11581 gctttcgcac ctaaagcggt ttcaatcaga gtaccgaccc agcctttatc tcgtttcaga
    11641 tctgctggta tcggaatatg aagcatctcg gcaatttcac ctaaagtgaa ccctgccagc
    11701 cattccgctt tgcttaataa tgcctgctcg gttggagaga atgtagataa ttgcattgca
    11761 cttagttaat tagactaaac tggcaagcgg tcaaatttag gcagaaattt gcaaaaaatt
    11821 actaaaaaat aaccgcttgt gaggaaatta catccaagca ttactgcgaa taacgcctac
    11881 tgcaatgcct tcaatttcaa tatattcttg agcagggttt actacaatcg gttttaattc
    11941 atcgttttca gggtgtaagt aaattaattc acctttcttc tctaagcgtt taacagtcac
    12001 ttcatcattt acccgagcaa ccaccacttg cccgttacga gcggtattgg ttttatgaac
    12061 ggctaatagg tcaccgtcta aaataccgat tttttccatt gaattgccat ttactttgag
    12121 taaataatca gcacttggat taaacatcgc accattcacc gggtaatggt tttcaacgtg
    12181 ttcaaccgct aaaataggtg tgccagcagc tactttgcca atcaacggta agccttcatc
    12241 ttcatcgttg gcagcttggt tttcgtcttc gactaaaatg cgaattccac gagatgtacc
    12301 tgataacatt tcaatatagc ctttacgagc aagggctttt aagtgttctt ctgccgcatt
    12361 aggtgattta aagccgattt cacgggctat ttctactcgg gttggtggca taccggtggt
    12421 ttcaatatgg tttttgacga aatcaaaaat ttcttgctga cgggcagtta gatgtttacg
    12481 cattttaagt taatcctcac tgtctttata tacagaaaat attgatagta tatacagtat
    12541 ttttgatttt gtaactaata atttcacgaa attccataaa aatttatggt agaatggaag
    12601 aaattagagg ttagacctcc aacaataacg attctaaaag gatatttata tgtctggctt
    12661 attaaatttt tatcgagctt tcctaaactt accactttca cttttagtaa aatctcgctc
    12721 tattccgact catccggtgg ctgaactgga actaaatctt gaacagccga ttgtctatgt
    12781 tctaccttat acctcgcaaa ccgatttatt aattttacaa aaaaactgct tggctttgaa
    12841 tttgcccgat ccgttgcaag aaaatgtgat tgaagggcaa acattgcttc gttttgtatt
    12901 tttagatgaa ggtcgccgtt tttttaaatc taaaggggcg aaaagtgaga cagagtcgat
    12961 tttttatcgt tatttagatt tacatcgtgc taatgctgaa ttagacgtcc aattagtgcc
    13021 ggtttcggta ttatgggggc gggctccggg caaagaagat gcccgccatt tacaggtgct
    13081 tacctcattc caacgttttt tatccatggt ttggtttggg cgtgataatt ttgtacgttt
    13141 ctcccctgca gtatcgttac gctatatggt aactgaatat ggtgcagatg aaaaaatcgc
    13201 tcaaaaaatc gcgcgtgtgg cgaaaatgca ctttgcaaaa ttgcgttatt cagcaatggg
    13261 gcctcgttta ccaaatcgtg atgcgatgtt taataaaatc ctgaattcag aggtgattca
    13321 agctgcgatt gcggaagaag cgaagaaatc atcgcctgaa aaggctcgca aagaagccga
    13381 gaaaatcatt aatgaaattg ccgctgatgt aaaacacgag agtttgcgtg tagcagatcg
    13441 agttctgagc tggctttgga ataagcttta tcaagggatc aacgtgcaaa atgcagaccg
    13501 tgtgcgtaaa ttggcattag aaggtcacga gatcgtttat gtgccttgcc accgtagcca
    13561 tatggactat ttgctcctat cttatctact ttaccatcaa ggattagtac cgccacatat
    13621 tgccgctggg atcaatttaa atttctggcc ggcaggcccg attttccgta gttggggagc
    13681 atttttcatt cgccgtacct ttaaaggaaa tcgcctctat tccaccattt tccgtgaata
    13741 tttagcggaa ttattctatc gtggttattc ggtcgaatat tttattgaag gcgggcgttc
    13801 acgcacaggt cgtttattag agcctaaaac cggtatgatg tcgatgagcc tacaagcctt
    13861 acagcgaggg ctgaatagat ctttaagtat tgtgcctgtt tatatcggtt atgaacacgt
    13921 cttagaagtc gatacttacg ctaaagagtt gagaggtgcg gcaaaagaga aagaaaatgc
    13981 gggcttggtg ctacgagtgc tgaaaaaact gaaaaattta ggtcaaggat atgtgaattt
    14041 cggtgagcca attttggtga ataattactt aaatcaatat ttccctgagt ggaaagagcc
    14101 ttccgaagat ggacgaccta agtggttaaa tgaagccgtg gataatattt cacatcaagt
    14161 aatggtgaat atcaataaag cggcagcagt taatgcgaaa aacttagtgg ggtcagcatt
    14221 attggcatct cgccagcgtg cattaacccg tgaacaactc attgaacaac ttggaagtta
    14281 tattcagtta tttcgtaatg taccttattc taaagatatg acattaccaa ctgaaagtgc
    14341 agaagtgatg ttgaatcatg ttattcattt acctcgttcg ggcgttttaa ttgaaaaaga
    14401 taattttggt gaactggttc gtttagaacg agaatctgct gtgttaatga catattacag
    14461 aaataatgtg cagcatttat ttgtgttgcc ttcacttgtt gcaagtatgg tacttcatca
    14521 tgaggctgtt tcgaaagatg ttgtgattaa gtcggttaat cgtatttatc cattcttgca
    14581 agcagagtta ttcttacact ttaagcaaga agaattaaaa gcacatattg aagcaattat
    14641 tgcggaacta agtcggcagg gggtgattaa aaacgaaagt gatatgttaa tgatcaatcg
    14701 ctcacatatt cgtaccttgc aattacattc agctggtgtg cgtgaaatcc ttcaacgtta
    14761 ttatattagc ctaagtgtct tgttggagca gccaaatatt agtcgtggct atttagaaaa
    14821 agagagtagt tcaattgctc agcgtttatc agtcttgcat ggtattaatg cgccggagtt
    14881 ttttgataag gcgattttct ctacctttac atcaagtcta aaagcacaag ggtattttga
    14941 tggtgatgat aatttagcga ttgcaaaagt taaagaaacg gaatcgttgt tacgtagttt
    15001 gatttcgatt gaagttcaac agaccattca aggtgcgatg gctaaagtcg cagaatctgt
    15061 agagaatcct aatatcgcag gataataaat caaagaaggg cgctaacaag cgctcgtttc
    15121 ttgcaatttt gttgccaaaa ataaaagctg aatgcgcgac cacattcagc ttttttactt
    15181 cctatataat tattttggtt caccgattgg taaaacagtc ttaccaaaac tttcattaat
    15241 aatatccgca gcggctaagt agaacgctaa gaatgcggtt aataaaccga agttaccacc
    15301 aatgttagtt agggtggtgt tatgggtaaa atcacctgcg gctaaaaggt agaaagtaat
    15361 ggttaaactt aagaaaatag cttgtaatgc acgggctttt gctagtgtgc cgatgaacat
    15421 cataagtgtg aatgttcccc aagctactaa gtaccaacca acgaattctg ccgatacatt
    15481 cgcagcaaag aacactttaa ataatgcaaa agaccaccag aatgcaccat agctggtaaa
    15541 cgcagtaaag ccgaacgtgt tacctttagc aaattcaaac atacctgcaa tcatttgtga
    15601 tgtgccaccg aaagcaaatc ccattgctaa aactaaacct acgttttcac cgctgaatgt
    15661 accgttattg attaggctta gtaaaaatgt agtaagtgca aaaccgcata aaccgagcgg
    15721 agccgggtta gttcctgaat ttggagctga cattgaaaac ctctgttata ttgttacacc
    15781 ataagtgtgg taattgttta tttacgccga taaatcagac gttatgtgcc taaaatttag
    15841 ggcgataaag tatagcgatt ttgcagtaaa ttgactagaa atttccgaga caagcggtga
    15901 gatttttgca aaattttgcc aaaaaatgac cgcttgttgt tgtcatttag ctatggattt
    15961 aactgccgat attggctggg tgttacgcaa tattgctttt taaaggcggt aataaaatgc
    16021 gactcggatt ggaagccgca agataaggcg atacttaata ccgacccagc ttggcttttg
    16081 agcagcattg ctgctttttg tagcctaatt ttgtgtacaa aagcatgtgg gctaatacat
    16141 aaatgtttgt taaataagcg gactaactgg gcacgagaaa ggtggataaa tgccgccata
    16201 tcatcgactt gccattcgtg ttcgggatta agcaaaatag ctttgatcaa aggtcttaag
    16261 tgtaagtctt gccaaccttt taaaataccg aataactgat tgttatggtt aactagatgt
    16321 tctcgtaaga tcatagttaa aataacaaca gcaagcgagt taaccacaga ttttacggct
    16381 aaattaggtg tttctgcttc ttgttttaga atatctaaca ttgcttttaa tggtgtctcg
    16441 gcaacttgaa atacgatcat ttcaggtaag ctttccatta attcggcttg atggtcataa
    16501 taaaaatgga ggcagaacat atcgcattct gattgagaaa gtcctgcttg ggtgagtgta
    16561 aatgcaccca attgttcagg gtttaccgca tttttgctgg tcaaaggctg tatttgacta
    16621 cgtaatgtat gatcggcaaa tctggggaaa aatacaatat ctccctgttt aaggtgatgg
    16681 gttttcccat tatgttgtag ataagcttgc ccatagctga tgatatgagc gattgcttgt
    16741 ccggtttgat gcggattctc aagttgccaa tctccctgta actgacattt cacactgatt
    16801 ccggctgaga tttgagcgaa agctagaagc ctatctaata tatccattgt tcattcctta
    16861 tatttccacc ttaaattgcg attatttcat tataatatga gctgatttga taataaagtt
    16921 tatcagataa acgcaataat aaatgcgttt tttcatatta ttcactttag gaggaaatca
    16981 atatgtcttc attccaaaat tggacagaac acacagctca cgttaagcaa tcttttggta
    17041 aattagggca aaaacaccct aaaatgcttg aagcttataa agcattaggt acagcggccg
    17101 cagcggaagc attagatcac aaaactcgtg aattaattgc attagcagta gcgattacaa
    17161 cacgttgtga aagttgcatc agtgtacacg cagaagaagc ggcaaaagca ggtgcaaccg
    17221 aaagcgaaat tgccggtgca ttagcgactg cgattgcatt aaatgccggt gcggcatata
    17281 cctatgcttt acgtgcatta gaagcggtgg aagagcaaaa ataaggagca ataaatgaag
    17341 aaattggctt ggattttagg ctttgcagct atgatgccaa tgatgtctag tgctaaacaa
    17401 gcatcagttc agcaagtgca ggctgaaaaa gcagcgggca tttggattga tgtacgttct
    17461 gctgaagaat ttcagcaagg gcatttaaat ggtgcaatta atgtaacgca tactgaaatt
    17521 gcacaacgta tcgcagaagt tgctccagat aaaaatcagc cgattcatct ttattgccgc
    17581 tcgggtcatc gagctgaagc ggcgcttaat gagctaaaaa aattaggtta cagcaatgta
    17641 actaatcatg gtggttatga cgatctgatt aaagccgggt tgaaataact gttttgagtg
    17701 ccaagcattt gcttggcact tttcgtttat atctgaggtt aaaaattatg agtgctttta
    17761 acaattttgt taattttgtt gcaaatattg ttgctccaat gcaacgccaa ttcattaact
    17821 ttgtacgtat tgccatttgt atcgtgatgg tttggattgg tggtttaaaa gtctgccaat
    17881 atgaagcaga cggtattgcc cattttgtgt ctaatagccc gttctttagt tatatgtaca
    17941 aaaaaggccc gaatttagtt gatgacggca caggtaaaat ggtgatggaa tatacccttc
    18001 acaaaaaccc tgaaggtaaa atggtggcaa aaaacatcga atggcataaa gaaaacggca
    18061 cttatactgc atcttatatc atcggtgcaa ccattgtgac ggttggttta ttgacgttat
    18121 ccggtatttg gttcccggtt tccggtatgg cggggggctt actcaccttt ggtatgtcga
    18181 ttgttacact ctcttttatg atcaccaccc ctgaaatttg ggtgccgaat ttaggtgggg
    18241 atatgccaac cccagcgcat ggtttcccat atctgtcagc agtcggtcgt ttaattgtga
    18301 aagatgtgat tatgatggca ggcggcttgg ttgccgcagc ggaatgtgca aatcgcattt
    18361 tagccagacg taaagcgatt gcttaattga tagtggtaat gcaagcggtc attttcttgt
    18421 aaaattttgc aataaaatga ccgcttgttt tttgtcaatt tgccataatt tcaagtataa
    18481 ttcaattacg taatcgtttg cttttatgga gaggaataaa atgacaacaa tcggtacacc
    18541 gttaagaacg aacgctacaa aagtgatgat gttaggttcg ggcgagttgg ggaaagaagt
    18601 ggtaatagag ctgcaacgct taggcgtaga agtgattgcg gtggatcgtt atgacaatgc
    18661 acctgcacag caagtggctc accgtgctta tacgatttcg atgttagacg ggaatgcatt
    18721 gcgagatttg gtggagaaag aaaaaccgga ttttattgtg cccgaagtag aagccatcgc
    18781 aactgcaacc ttggttgagt tagagcaaga gggatataac gtaatcccaa cggcaaaagc
    18841 aacgcaatta acaatgaatc gagaaggcat tcgccgattg gcggcagaag agttgggctt
    18901 aaaaacgtcg ccttatcgtt ttgtggataa ttttgaacag ttccagcaag cgattcaaga
    18961 aatcggcatt ccgtgtgtgg tcaaaccgat tatgtcttct tccggacacg ggcaatcagt
    19021 aattaaatct gaagcggata ttcaacaggc ttgggattat tcgcaacagg gcggacgtgc
    19081 cggcggtggg cgtgtgattg tagagggttt tatcaaattc gattatgaaa ttacccagct
    19141 taccgttcgc catattcacg gcacgtcgtt tttagctccc atcgggcata ttcaggttga
    19201 tggcgattat cgtgaatctt ggcaaccgca gcaaatgtcg gacattgcat tgaaaaaagc
    19261 tcaagaaacc gcagaaaaaa ttacctctgc actgggcgga agagggattt tcggcgtgga
    19321 actttttgtc tgtggcgatg agattatttt taacgaagtc tccccacgtc cacacgatac
    19381 cggaatagta acaatggcat cacaagagct ttctcaattt gctctgcacg cccgtgcgat
    19441 tttgggctta ccgattccgg aaatttaccg catcagcccg gcagcttcta aagcgattgt
    19501 ggttgaaggg aaatcggata atgtgcgttt tggcggtgta gataaggtat tagccgaaat
    19561 cgggacgaat atccgcttat tcggtaaagg cgaagtaaac ggacaccgcc gattaggggt
    19621 aattcttgct cgtgatgaaa atacagtgag agcattagaa aaagctcggc gagcttatga
    19681 taagttagat attcaattat aaagtcagga ttttgatatt cgttgatagt aggcatttta
    19741 tgcctactat cctataggcc tctaatcaaa ttggatgaaa aagttgaaga ttgttaatcc
    19801 tctttgccga gaatttggtt cacttcgctc ttatacaata ctgcttttgc tccaaatacg
    19861 gcttgtacac cgccaccgac ttccagcacg tcaatcgcac cgagtttttt cagtgttgct
    19921 ttatccacgg ctttcacctc tttcactgcc acacgcagac gggtaataca agcatccaca
    19981 ttttcgatat tatttgcaga gccaagagcg gcgataattt tatgggcatt ttcagtcagt
    20041 gagctggttt gttgttcgac tacctcttca ctctcttccg cacgtcccgg tgtcattacg
    20101 ttgaattttt tgatcaggaa taggaacgag aagtagtaaa gtgccgccca cggcaagccg
    20161 actatgatca ctcgaagcca gttagtgttc tcgttgcctt gcaaaatgcc aaacagggtg
    20221 aagtcgatca cgccaccgga gaaggtgtta ccaatcgaga tgttgagtaa gtctgcaatg
    20281 tagaacgaca cgccgtctaa aaaagcgtgg aacacataga gccacggggc aacaaacagg
    20341 aacataaatt caatcggctc ggtaatgccg gtgataaaag aggtgagcgc tgcacctaag
    20401 aacagaccgc taatcgcacc acggcgggct ttcggcacag cgtgatacat cgctaaacag
    20461 gcggcaggta agccaaacat catcgtatcg aaacgtccag cgaagaaacg tgtaccttcg
    20521 gtaaataagc cttgatgggt tggatcggcg agttgggcga agaagatttt ttgcgccccg
    20581 ataatggttt caccatttac cacttctgtt ccgcccaatt cggtgtacca aaacagcggg
    20641 tagatcatat ggtgtaagcc gaccgcaccg cttaaccgca ttaagaaacc gtagaaaaag
    20701 gtgccgattt cgcccatttc cgcaatccct tgccctgctg aaaccaacca ctgttggaaa
    20761 gccggccaga tcaaaaagaa cactgccccg acaaaaatcg cagcaaaggc ggtcacaatc
    20821 ggcacaaacc gagagccgcc aaagaagccg agaatttgcg gcagctgaat gttgtggtat
    20881 ttgttatgca gtttcaccgt aatcaagccc attaccagcg agccgatcac accggtatca
    20941 atccctttgg tttcaggagg aaacagcgga atgagggcag aaatcgtgcc tgtcataatc
    21001 aaataaccga ccactgctgc cagtgccgct acgcctttat ctcgttttgc taatccaatg
    21061 cctaaaccga tacacagtaa taatgcaagg ttgccaaaca ccacactgcc tgccgatgcc
    21121 ataatctgga aaatgccctg taaagtcggg ttatccagta tcgggtaggc ttgcaccgtt
    21181 gccttattcg acaaagctcc gccaatccct aacagcaaac cggctgccgg taaaatcgca
    21241 atcggcagca taaaagcttt tccgacttgt tgcagttgtt tgaacataaa atttctcctt
    21301 ttttatggtt gtatttgatg gtttatagca tactgaaatt tagccgtatg aggtgtgata
    21361 taactcacag atttgcaaaa tttttagcaa attcgaccgc ttgtaaaaaa attaccgctt
    21421 gcggaaaaat tgaagtagaa ttaagcattt ttttagcaaa cacaacataa aaaatttgga
    21481 gaagattatg cctattttac gttcagcaac ttccactcag ggtcgtaata tggcgggggc
    21541 tcgtgcatta tggcgtgcaa ccggtatgaa agaaaatgat tttggtaagc cgattattgc
    21601 agtggtgaac tcattcaccc aatttgtgcc ggggcacgtc cacttaaaag atatggggca
    21661 gttggttgcg gcagaaattg aaaaagccgg tggggtggca aaagaattca acaccattgc
    21721 ggttgatgac ggcattgcaa tgggacacgg cggaatgctt tattctttac caagccgtga
    21781 tttaattgca gacagtgtgg aatatatggt gaatgctcac tgtgctgatg cgatggtgtg
    21841 tatctctaac tgcgataaaa tcaccccggg aatgttaatg gcagcaatgc ggttaaatat
    21901 tccgactatt tttgtctctg gtggcccgat ggaagccgga aaaactaaac tttccgatca
    21961 attaattcgc ttggatttag tcgatgcaat gatcgaaagt gccgacccga atgtgtctga
    22021 tgaacgtatt gatgcgattg aacgtagtgc ttgcccgact tgtggttctt gttcaggtat
    22081 gttcaccgca aactcaatga actgtttaac tgaagcttta ggcttaagtt taccgggcaa
    22141 tggttcaatg ttggcaactc atgctgaccg taaagagctt ttcctaagag caggtcgtga
    22201 aattgtggaa ctttgccgta aatattacca acaagacgat gagagcgtgt tacctcgctc
    22261 aatcgctacc ttcgatgcat ttgaaaatgc aatgagcctt gatattgcaa tgggtggttc
    22321 aagtaatacc gtgcttcatt tactagcgac tgctcaagaa gccggcgttg attttaaaat
    22381 ggaagatatt gaccgcctct ctcgtgtcgt gccgtgctta agtaaaattg ccccgaatac
    22441 caataaatac catatggaag acgtacaccg tgccggtggg attatgggct tgctgggcga
    22501 attagatcgt gcaggtttaa tccatcgcca cgttaaaaca gtgctaggtt taacgataga
    22561 agagcaactg aatcaatacg atattattcg taataaagat gaagatttac acaaattctt
    22621 ccgtgcaggt ccggcaggaa ttcgtactac taaggctttc tcgcaagatt gccgttggga
    22681 cactgttgat gatgaccgtg taaacggctg tattcgcaat gtggaaaatg ctgtgaccaa
    22741 agagggcggg ttagcggtat tatttgggaa tattgcagaa gatggatgta ttgttaaaac
    22801 cgcaggggta gatgagtcta tttggaaatt cactggcacc gcaatcgtgt ttgaaagcca
    22861 agaagatgcg gtagcaggta ttttaggcgg aaaagtgaaa gaagggcata ttgtgattat
    22921 ccgctatgaa ggtccgaaag gcggcccggg tatgcaagaa atgctttatc caactagtta
    22981 tttgaaatca atgggcttag gcaaaaaatg tgctttatta actgacggtc gtttctctgg
    23041 cggtacctca gggttatcta tcggacacgc ttcaccggaa gccgcttcag gaggagcgat
    23101 tgccttaatt aatgatggcg atacggtggc gattgatatt ccgaatcgtt cgattaactt
    23161 aatggtttca gatgaagaac ttgctgctcg ccgtgcagaa atggaagccc gtggcgataa
    23221 agcgtggcag ccgctaaaac gtgagcgaga agtgtcgttt gcactaaaag tgtttggaca
    23281 ttttgccacc tctgctgata aaggtgcggt gagggataaa tcgctgttaa agtaaataaa
    23341 ttagaaaaaa gaagcatttc aataatatat tgatctgctc tttattcagc tgaatattta
    23401 atctagctga atggagagca gatcgatagc ctaatttaca tctttttgtt ttgatacagg
    23461 gaaatgtatt acaagcattt tgccggtttt ggcagacctg caattttagt ggcttgtttt
    23521 gcaggaccat caggaaacaa gcgttgtaaa taacggctgt tgcctttttc ttcaccgaat
    23581 ttttgtgcca ttgtctttac cagcattcga attgctggtg aagttttgta ttcttggtag
    23641 aaatcccgca ccagataaat aatttcccaa tgttctgcgg ttaagctaat ttgctctttt
    23701 tcggcgattt tttctgctaa ttctacagac caatcattta aattagttaa atagcctgaa
    23761 gcatcggttg ggtattggat attatttaat tcaatcgtca tcaaataaaa atgccacata
    23821 atgtggcatt cctcttaaac taaaacgcta gtcgtcacta cctagcacac cgaagatttg
    23881 taagaagctt acaaataggt tgtagataga cacatataaa tcaacggttg cacgaatgta
    23941 gttggtttcg ccaccgtgaa taatgttgct ggttgccagt aaaatcgcac cgcttgagaa
    24001 aatgacaaac aagctgctta gggctaaact taatgccgga attgctaaga agatattggc
    24061 aataataccg actaataata ccacaaacag ggcaaccatc attccgctga taaagctcat
    24121 atcttttttg gtggttaata cataagctga acaagcgaag aaaaccaatg cggttgcacc
    24181 gaatgcaagg gcgacaatat cccctaaacc cgcaccgatg taacggttta aaataggacc
    24241 taaggtatag cctaagaagc cggttaaagc aaatacgctt aagatacccg cactgctgtt
    24301 tgaggtggca ttcgtcaaga aaagtaagcc gtaaaagccg accaataatc cccaccacgg
    24361 catagccggt gcgttcattt gaattgcaac aaaagcaaca actgcggaga aagtcagggt
    24421 cattgccaat aacatatagg tattgcgaag cactttgtgg gtgctaatta gagattcacc
    24481 agttgaatag ctgtgagcta aacgattttc cataaaaatt ccttctgttt ttgtgtttaa
    24541 atcggaacat ccgatggatt aatatctatg gataaatttc cataaatcaa gaagtaaggt
    24601 agccgtaatt tattgtaaag tcaatgcgat tttgtaacag aagagtaaaa aaaaacattt
    24661 agttgtgtta cacttaatac cactctactt tatattcctt ttcatcgatg aattcgctat
    24721 gaagctcaat ttcccaactt atttaacctt atttcgggta ggattaaccc cactttttat
    24781 tgtggctttt tatctgccga caaaatatgc gcctgaaatt tcaacactta ttttttttat
    24841 tgcatcgatt accgatgcct ttgacggcta tttagcacgc aaatggaatc aaaccacccg
    24901 acttggtgca tttttagatc ctgttgcgga taaagtcttg gtagctgttg cgtttgtctg
    24961 cgtggcggag tattaccata cttggtggat tactattcca atctgcatta tgattgcccg
    25021 tgaaattatt atttcggctt tgcgtgaatg gatggcggag cttggggaaa gggccagtgt
    25081 tgccgtttcg atttggggga aagtaaaaac gactgctcaa atgctcgcat taggtggaat
    25141 gttatggaga cagaaccaac taatggagat tttagccttt attctgcttt atattgcagt
    25201 gggtttaacg atctggtcta tgatgcagta tttaaatgct tcaaagaata gtctattgaa
    25261 gtcataagcg gtcatatttt tattcttttt tgcaatttgt agagtggaaa tatcgctcta
    25321 caattttcaa ttttatcaac tctaatgtct gaatttaacg ctaaatcctt cctgttaaat
    25381 gtgcctcacc aaccgggtgt ttatcgtatg tatgatagta aaggcacgat aatctatgtg
    25441 ggtaaagcca aagatttaaa aaagcgttta gccagctatt ttcgtagcca actttccagt
    25501 aaaaaaacgg aagccttggt ggcaaatctt gctaatattg aaacgacgat cactcattct
    25561 gaaacagagg cgttactcct tgaacataat tatattaagg aaaatcagcc gaaatataat
    25621 gtgttgctca gagatgacaa atcttatcct tatattctgt taactaaaca taagcatcct
    25681 cgtttaacag catttcgtgg tagtaaaaag atcgccggtg aatattttgg gccttatccg
    25741 aatgttacgg cagttcggga aacactgaat ttattgcaaa aaatttttcc tattcgtcag
    25801 tgtgaagata cttattataa aaaccgttca cgaccttgct tacagtatca gatcggacgc
    25861 tgtttagccc cttgtgtaga gggctgttat tcacccgttg aatacgatca gcaggttaat
    25921 ttggttcgtt tgtttttaca gggaaaagat caccaagtag tcgagcatct ggtacagaaa
    25981 atggaagatg cggcggaggc tttggatttt gaaggtgcgg cacgttttcg ggatcaaatt
    26041 caatcagtaa gagcggtgca agaaaaacaa ttcgtctcta atgataggct agatgatctt
    26101 gatattatct cgatcgttta tcaaaatggg attgcctgtg tgcatatctt atttgttagg
    26161 caaggtaagg tactaggcaa tcgttcttac tttccaaaag tgccaagtaa tacagattta
    26221 accgagctcg cagatacctt tgtcggtcag ttttatttac aaatgaacca gcaccgcacc
    26281 atacctaacc aaattgtaat tgatcatcaa ttaagtgaat ctaaggcact cagtgaaatt
    26341 ttaagtgagc aagcagggca taaagtcagc attttagata atgccatcag aggtgataaa
    26401 cagcgttatt tagctttagc gagaactaat gcaatggcag cattagtttt acaacttaag
    26461 caagaatccc atattcaaag ccgttatcag gcattgaaag aaatgttgaa aatgtcagag
    26521 attaaaagaa tggagtgctt tgacatcagt catacaatgg gcaaccaaac agtggcttct
    26581 tgcgtggtgt ttgatgaaaa tgggccgcta aaatcggatt accgccgttt taacattgag
    26641 gggattaccg gaggtgatga ttatgcagca atggagcagg ctctcttgaa acgctataat
    26701 cgagaattac cgccagaaaa gatccctgat attattttta ttgatggtgg caaagggcag
    26761 ttgaaccgag cgttagatgt cttcgctaaa cttgatgtgg aatgggataa atcgaaaccg
    26821 cttttaattg gtgtggcaaa aggcgtagaa cgtaaagctg ggctggaaac tttaattatc
    26881 agcaaatggg ataaagaaat tcacttaccg ccagatagtc ttgccttgca tttaattcag
    26941 catattcgag atgaatccca ccagcatgcc attagtgggc atcgtaaaaa acgccaaaag
    27001 gcctttaccg aaagtggatt agaatctatt gccggtgtcg gtgcaaaacg ccgacaagcg
    27061 ttgctaaaat atttaggcgg aatgcagggg gtgaagtctg caaccttgga agagattcaa
    27121 tcagttccgg gaatttctaa agcgttggca gaggttattt ttgatacatt aaaaaatagt
    27181 taaattatca atagcgatat cgcttccagc cgtaatggta gcccactcct atgcttgggt
    27241 aaattatagg gtgaattggc agatttatgc tttctgagcg tttatcgctt tggtttaatg
    27301 gctcatcatg ttgctttgta tttttatcaa cagtttgctt attgattact cgttgatggt
    27361 aatcctgaac tgcttgcata tccattggta ctgtgctttg ttgttggggt gtcgaacagg
    27421 cggttagtgc aacgctcaat ccgagtaaaa ttaatttttt catatcattt ccttatattg
    27481 caaaatattt tgcttttttg accgcttatt ttgctattaa ttcttaaaaa gattatttta
    27541 tccataaaaa aggacgcact aggcgtcctc atttctattc tttaaaatta aagagcagat
    27601 tttgcttttt caactaaagc tgcgaaagca actttgtcaa atactgcgat gtcagctaag
    27661 atcttacggt cgatttcaac agatgctttt ttcaagccgt tgatgaattt gctgtaagat
    27721 aaaccgtttt gacgagctgc tgcgttaata cgagcaatcc ataattgacg gaattgacgt
    27781 ttacgttgac ggcggtcacg gtaagcatat tgagcagctt taactactgc ttggaaagca
    27841 acgcgataca cgcgtgaacg tgcaccataa taacctttag cagccttaag aactttctta
    27901 tggcgtgctc ttgcaataac accacgtttt acacgagcca ttatttaatc tcctaattgt
    27961 ctattttgat tggtggtcgt catcacgacc tttactaaga attctatccg tacgtccgta
    28021 ctttactaca ctacgctaac ctaaaaggct tatgcgtatg gtaagcacgc tactactaaa
    28081 acttggtcag ctttcgctac cattgatttg tgacgtaatt gacgtttacg tttagtggtt
    28141 ttcttagtca aaatgtgacg taagtgagat tgtttacgtt taaaaccgcc ggaagctgtt
    28201 tttttgaaac gcttagcagc accacgtact gttttaattt taggcattgt taaaaaactc
    28261 cgcattgttt gttagatatt atgaaaataa ggcgaatttt gtgaacaaaa ttacttggaa
    28321 gcacttattc tccgctatac gattttcatc gttaaaaagt caagcaggct gctgagtttg
    28381 cctgttgagc attttctctt tcttggctag gcaaaaaagc ttgcgaattt tagcgaaaat
    28441 ataaccgcta tgcaagccaa tttaagcttt atcaagaaaa aagcacatta aaacaatgtg
    28501 cttatcgaaa ttatttcttc ttaggtgcga tcaccatcac aacttggcga ccttccaatt
    28561 tgcctggggc tgactctacc attgcaattt ctgcagtatc tgctttgaca cgttctaaaa
    28621 cgtccatacc gatttcttgg tgagccattt cacgaccacg gaaacgcact gtgattttta
    28681 ctttatcccc atcttctaag aaacggataa tgctacgaag tttaacttga taatcgccat
    28741 catcagttcc cggacggaat ttgatctctt taacttgaac aactttttgt tttttctttt
    28801 gttcttttgc tgctttctct ttttcgtaga tgaacttacc atagttcata atacgacaaa
    28861 ctggtggttc agcatttggg ctgatttcca ctaaatccaa ttcagcttct tctgctctat
    28921 ttagagcatc ttgaagtgat acaataccaa cttgttcgcc gttttcatcg gttaagcgaa
    28981 cttcttttac gccacgaatt tcgtcattaa gacgatgtgc acgatttgat tgaacacgtt
    29041 ttacaggttt aatagcctta ttccttctag taaatttttg cttaaatttt accgcttgag
    29101 agcgtataaa tattttagat tgcttgtttt aagtgattaa aaaacagcta aacgtgcgga
    29161 ttctataaga ttttcagtgc ttatgcaata ataaagccct tatttaactg cctattttcg
    29221 gttattttga tattctttga ttaaactcat aaatgcttgc ccaaatcgtt caaattttcg
    29281 ttcaccaaca ccattaattt ctaacatttc cacttttgaa gtcgggagaa attctgccat
    29341 ttcttgcaag gtggcatcgt taaagacgat ataaggtgga atattttcga ggtcagctat
    29401 ctgcttgcgt aaaaaacgta agcgtgcgaa taggtctttg tcatagcgat gacttgcttg
    29461 tttttgcaca aatgcagtcg cagatatacc taaacgtggc aatgcaagct gaagttgctt
    29521 ttctccacgc aaaaatggtc tggcactttc ggttaattgc agagcggaat ggttagcaat
    29581 attttgaata atcaacccta aatgaatcag ttgccgcacc acattttgcc aataatgttg
    29641 gctttgttct tttccgatac cataaacgga aagttgatcg tgttgatgtt cacgaatttt
    29701 gagattgttc attcctcgca ataccgcaat aatatggtgc tgaccgaaaa tttgaccggt
    29761 gcggtaaatc accgacatca ctttttgggc atcaagtaag ccatcgtatt gttgcggtgg
    29821 atctaaacaa atatcgcagt ttttgcattg ctcttggcga tgttccccaa agtagttgag
    29881 taagactaaa cggcggcaag tctgtgattc ggcgaaatcg ccaattgcct gtaatttatg
    29941 ctgtttaata tttctctgtt cgctttccgg ctcttccaat aatatttttt gtaaccaagc
    30001 ataatcgcta ggatcataaa aaagcacggc ttcagaaggg agatcatctc gcccggctcg
    30061 tccggtttct tgatagtaag attcgataga gcgaggtaaa tcgaaatgta ccacaaaacg
    30121 tacgttggat ttgttgatcc ccataccaaa cgcaatagtg gcaaccacaa tttgaatatc
    30181 atcacgctga aaggcattct gcactcgttc tctctgttca aaactcatac cggcgtgata
    30241 gcccatcacg ctgattttac gggctgagag tttctcggtg atttcttcca cttttttgcg
    30301 actgttgcag taaacaatac cgcttttgcc ttgctgtttg ctgatgaatt taatgagctg
    30361 ttcaagcggt ttaaattttt cctgcacggt gtagcgaata ttggggcgat caaagctgcc
    30421 taaatagata tgtgggctat ttaagcgtaa atgatgcaga atatcggagc gggttgttag
    30481 atctgccgtg gcggtgagtg ccatcaacgg cacattcggg aaagtgtttc gtaagccacc
    30541 tagcagggta tattcagggc ggaaatcgtg cccccattgg gaaacacaat gggcttcatc
    30601 aaccgcaata aagctgattt tacatagcga aataaagtgg aaaaagcctt gagtcattac
    30661 cttttcaggg gaaagataga gtaattttaa ttgaccggat aaggcttttt gttccacaag
    30721 ttgctgctct tcgagcgttt gagtggagtt aagataagct gcttcaatgc cgttggtgat
    30781 aagttgatcc acctggtctt tcatcaacga aataagcggc gaaatcacca aagtgatgcc
    30841 gtctaggcac aaagccggca cttggtagca aagggatttg ccaccgcctg ttgtcataat
    30901 cacgaggcaa tcacgatttt ccaacacggc attgataact tcttcttgcc cgtctcggaa
    30961 tttttgatag ccaaaaatat tatttaaaac agaaattgcg gtggtgttca ttggtagttg
    31021 gttgctactt atgatagtac tcgtcttctg agagtatctt ttaaaatgaa aataaagcac
    31081 tcatcaaaga cgagtgctgt cttagttaac aattaggcat tagaaagaaa cgctttctcc
    31141 gtgtcgagca aaagcttctt ctaaatgttg ccagaacgag cgaccttcat ctgttaccca
    31201 ttcgccttct acatttttaa agtggaaacc acccaatttg ctggcaagcc ataattccag
    31261 cattgcctct tgtttattaa tgataacttg cgattcatca tcaaaggtta aggtgcagac
    31321 cgctccttgg atttcagtat cgactgataa tccttcgtca taaatttttt cttcaatttg
    31381 ttgccatact tgctctacgg cttggtggaa ttgtgctgtg ttcattggtg tatccttatt
    31441 tgaatgttat ataagtagta aatacttttt gttttagctg tttaaatggt ctgtaaagtt
    31501 ctttttgtat ttttgttaag aaataattag gctttttaag tttagcttga ttttttattt
    31561 tatcctcatt attacaacga atagctctat cat
//
LOCUS       DANLVT010000014        31070 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.014, whole genome shotgun sequence.
ACCESSION   DANLVT010000014 DANLVT010000000
VERSION     DANLVT010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 31070)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31070)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31070
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.014"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..895)
                     /locus_tag="PXC99_000567"
     CDS             complement(<1..895)
                     /locus_tag="PXC99_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5417049.1"
                     /translation="MSKIEFEKIPNSIRKPSVLTEYNNKDAVTTLPTNEQEVLIVAPM
                     LNGEAAFTAPQKIFSDVEAENLFGKGSVAHLMVRQAIQNNPLIRLTVVGLKDHEAGIA
                     ATGQVSFTGTVTYAGVVRITIAGTAYEVAAAKGEEAQAIVARLVNVINAASYSPVVAS
                     VESETTLKLTSKAKGEISNEITLATRNTATGLTLEARAFDNGQRNALIAPALASVAGT
                     HYNVIISPFSDDENALALRSHLESVSAPIEDKPAIGVMGWRGTYATGTTLTASLNSER
                     IIVGWYKGATESNAMIAAGLGA"
     gene            complement(895..1074)
                     /locus_tag="PXC99_000568"
     CDS             complement(895..1074)
                     /locus_tag="PXC99_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2635 domain-containing protein"
                     /protein_id="HDL5417050.1"
                     /translation="MLKVKAAKGVRVPVENRPHHYIEQEAVEVENTLYYQRRIADGDL
                     IVVKETKSAKETGGK"
     gene            complement(1075..1716)
                     /locus_tag="PXC99_000569"
     CDS             complement(1075..1716)
                     /locus_tag="PXC99_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1834 family protein"
                     /protein_id="HDL5417051.1"
                     /translation="MISKIERALIERLTLGLGKMVYAVAGYAGEINDEKLDVLRLPAC
                     LVSYGGSAFEAKSMGVRGKRYQATDVFVVLVITRSMRNQTAGRLGGVTSREVGVNQLL
                     GAVKTLLINQTLDGLVHPIQPKRIRTIWNNAEVKKEKLSAYAIEFEISYNECNVLDDG
                     RFPEGVEPNEQVFKQYQGKLDEPQGDLSGFNNRIFDPNNNAETAFRTEFKDGD"
     gene            complement(1713..2138)
                     /locus_tag="PXC99_000570"
     CDS             complement(1713..2138)
                     /locus_tag="PXC99_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1320 domain-containing protein"
                     /protein_id="HDL5417052.1"
                     /translation="MYALVDDFVLRIGEQESIELTDREMVGVVDEATLEVALADSSSQ
                     IDGYLSGRYRLPLKTVPQNLKRICCDLARYHLTSKSLVTMTEEVENRYKLCLKELENI
                     SKGVVSLAVDETNEEESATGENTVQFFNGGNRIWGRDKR"
     gene            complement(2138..2479)
                     /locus_tag="PXC99_000571"
     CDS             complement(2138..2479)
                     /locus_tag="PXC99_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417053.1"
                     /translation="MAKPKKNDNEALNTNENTPLEDKVNEQPEDKTDEQPKPPESETK
                     PDDGALINPIAFEVKLKSIHPQATYGRCGYRFNKETAVEIARKALSDEQIITLANDPY
                     LEFVPVVEGDA"
     gene            complement(2527..3444)
                     /locus_tag="PXC99_000572"
     CDS             complement(2527..3444)
                     /locus_tag="PXC99_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu-like prophage major head subunit gpT family
                     protein"
                     /protein_id="HDL5417054.1"
                     /translation="MFKKSELLKALDTAFRKEFSAGLKVLEPQWGTVAMKVSSSTATN
                     TYAWLGQFPKMQEWVGDRQIKNMQAQGMTIENKLFESTVAVPRTAIEDDQVGLFTPMV
                     KQAAQSAAELPDDLVFSLLKKGKTTLCYDGQNFFDTDHPVYQNVDGTGTSKTQSNITT
                     GSASGKPAFYVLDDSQAIKPLIWQERTTPEIETKFDPSESDHVFMKDQYLWGVRARGN
                     AGFGFWQLIHRVEDSELNSETLEKVLTAMRTLKGDGDKQLNIRPTTLLVPPSLEFAAR
                     KLLEAELIDGTTNTLKGVLKVVVNPFIAE"
     gene            complement(3444..4514)
                     /locus_tag="PXC99_000573"
     CDS             complement(3444..4514)
                     /locus_tag="PXC99_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage protease"
                     /protein_id="HDL5417055.1"
                     /translation="MFKHKFKLNPIALSFKLNQEANGRIQLFPFGWFEAQDGRGGRWY
                     VGDENGYALADDINNTAIDLMIDYEHQTLYIAENGKGNPAAGWITKAEYISGEGLFAD
                     VKWTPQATQEIKDGVYRYLSPLFLTDGSGMVIKVLNAALTNRPALHNLQEVVAMSSQF
                     AKFLTPEEENPKMKELLIKLFALSANATDEQITEKLTALEKAKGDSPVALSDVYTELA
                     KEKSQVVALSAKVNHPDPAKFVALSDLQAVQTELNGLKQQINDKERDALIQTALSDGR
                     LLPAQKAWAEKLGKQDLVALSDFLKTVTPNPALASTQSGGEDPNKGTEKVALSAAEIA
                     AAKSLGLSEAAYIEKYKTEESK"
     gene            complement(4773..5189)
                     /locus_tag="PXC99_000574"
     CDS             complement(4773..5189)
                     /locus_tag="PXC99_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDL5417056.1"
                     /translation="MIEIQIHGIDEIIATLNRIAAKTANKTDLMRNIAGKMESAVLTN
                     FDEGGRPKWLGIKHRQGTPLVDTENLMGSITADYNNDSAIVGTNEPYAAIHQFGGMAG
                     RGRKVKIEARPFLQLTSQDRQDILDDVQAYWQKLLD"
     gene            complement(5340..6639)
                     /locus_tag="PXC99_000575"
                     /pseudo
     CDS             complement(5340..6639)
                     /locus_tag="PXC99_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248654.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
     gene            complement(6626..8251)
                     /locus_tag="PXC99_000576"
     CDS             complement(6626..8251)
                     /locus_tag="PXC99_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 domain-containing protein"
                     /protein_id="HDL5417057.1"
                     /translation="MSKKKHNKQIKPNLNPIKNQELQTDLAEITATGRVLSDHPSNFI
                     TPAKMKAIFEDTENGDITAQHELFMDIEERDSSIFANIQTRKRAALGVDWAIVAPRNA
                     TPQEEKLRDEVDELFYQLGNLEDLVMDCMDAVGHGFAALEIEWAFNGKLWYPNAFIHR
                     PQSWFKWDKHDNLLLKTRQNTEGEPLREFGWVVHTHKSRSTQAARNNLFRSLAWLYMF
                     KHYSIHDFAEFLELYGMPIRIGKYGAGATPNEKQTLKRALAEIGHNAAGIMPESMSIE
                     LHNAANAGGAAGNNPFLQMVDWCEKSIARLILGQTLTSGADGKSSTNALGNVHNEVRR
                     DLLVSDVKQLGQTFTQQIILPFLQINFGNIDPTRIPSFEFDTKEPADLALFAESLPKL
                     VDIGMPIPVQWAMDKLGIPEAQENEAVLGRSAPPQAVGLSANFPQKMTACECGCGGKV
                     HALSAQTKTGIKEQDALDDLADEAFSVPDFNAQFDPITKKAVAVVMACSSYDEAAEKL
                     AAAYPDLVSEEHDRYLANALFLADLLGAANAES"
     gene            complement(8320..9945)
                     /gene="terL"
                     /locus_tag="PXC99_000577"
     CDS             complement(8320..9945)
                     /gene="terL"
                     /locus_tag="PXC99_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HDL5417058.1"
                     /translation="MKIKEFEKELEELRRQLQQNIEASFEGWDDKPQAISERRQKVLD
                     PVHGFEYFVQAYFPHYVRSEHKSQLHHYLFENLPLSVSDLSKSVRQAIAAPRGEAKST
                     ICTQLFPLWCLVRDLKRYIIIAMDTKEQAYSMLEAIKVEIESNPRLRIDFPEVAQGKV
                     WRAGVIMTAKKQKVEAVGAGQKLRGRRHGAYRPDLVVLDDIENDESVETPAQRNKLHN
                     WVLKAVLKLGAAGEKFDVIYVGTILHYDSVLSRILNTKGWRRVRFKAILRFPGNMALW
                     DEWENIYLSEEGDDDTMSDLFYQQHKAEMDKGALVSWLARPILYLMKIRASDGHSAFD
                     SEYQNDPVSGDDAIFANSIQYWTELPDDLIYFGALDPSMGKAGASRDPSAILVGGYHR
                     ESGKLYVVEAQIKKRLPDLIIEDVIRLHSQYNCHRWFVETVQFQEFLQTELVKRSAQR
                     GKPVPATATKPNSDKMLRIESLQPHIANGLILLHRSQSTLESQLRHFPKADHDDGPDA
                     LEMLWRNALSSSAPIEWESVDDFDGEYRSKWRH"
     gene            complement(9949..10095)
                     /locus_tag="PXC99_000578"
     CDS             complement(9949..10095)
                     /locus_tag="PXC99_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417059.1"
                     /translation="MAKKKQTVVHKHYSFRWIVQLACIFGAIKLMLNGTDGWGWLLLI
                     AACM"
     gene            complement(10095..10595)
                     /locus_tag="PXC99_000579"
     CDS             complement(10095..10595)
                     /locus_tag="PXC99_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1804 family protein"
                     /protein_id="HDL5417060.1"
                     /translation="MAHDVEVQKAVRQAYVFDRLSLEMAAERAGVSFGTARRWKAAAE
                     KNGDNWEKARDVQAMASGGIENIAQGLLAGFLIKYRTLMTELEENTEMPTAAKVEALA
                     ALADSFAKMTASSKKLLPETSAMATAMRAIEMMANIVKTKKPHLLPDFLEMLDELEVQ
                     FKKEFK"
     gene            complement(10603..10857)
                     /locus_tag="PXC99_000580"
     CDS             complement(10603..10857)
                     /locus_tag="PXC99_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417061.1"
                     /translation="MSRKKQKQTDSEKLDLILGGLNELNDKVDKQNEEIERLHREIQA
                     TNRLVNEMARKNRRDAVVAGGLGGGIVAVGFELLRLKFGM"
     gene            complement(10857..11114)
                     /locus_tag="PXC99_000581"
     CDS             complement(10857..11114)
                     /locus_tag="PXC99_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417062.1"
                     /translation="MIDEKLFQMLISFVVAPLVAFVGKVIFDRINRNEQTVKELKAEM
                     ESKYQSKELAHEVNRGIKEKLDDILDSLKEVNQKLDKKADK"
     gene            complement(11107..11262)
                     /locus_tag="PXC99_000582"
     CDS             complement(11107..11262)
                     /locus_tag="PXC99_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417063.1"
                     /translation="MKLIKKLRQRWQQWRFYRRRPDLAELHNVVRAAVAQGNQHPVGR
                     AKRGRYD"
     gene            complement(11277..11636)
                     /locus_tag="PXC99_000583"
     CDS             complement(11277..11636)
                     /locus_tag="PXC99_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2681 domain-containing protein"
                     /protein_id="HDL5417064.1"
                     /translation="MITQQIAGVVGVVSTILAYAFYKSWQLKQERKLTATLKAEKQQQ
                     AVEIQQKNAEVKNAKIQQKHVSETRRIQPSAIDEQLHQHGYFRDDNGLHGVRSDLPEP
                     CGHNGNETPSACTQSDL"
     gene            complement(11633..11878)
                     /locus_tag="PXC99_000584"
     CDS             complement(11633..11878)
                     /locus_tag="PXC99_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2644 domain-containing protein"
                     /protein_id="HDL5417065.1"
                     /translation="MKQFLLDLITNKDGTASTTGFIQFMSWLVLSGILIHAYLYDKPF
                     ISDWWFAYAGICVLGSPATKGVVSALKQKERSREAEE"
     gene            complement(11881..12414)
                     /locus_tag="PXC99_000585"
     CDS             complement(11881..12414)
                     /locus_tag="PXC99_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 108 protein"
                     /protein_id="HDL5417066.1"
                     /translation="MTEPIKNKATIADFNLAFDRLIGHEGGYVNDPKDPGGETNWGIT
                     IHTARANGYTGSMRAMSRADAKTIYLKAFWQRYNCEQFPPELAFQFLDACVNHGSGNA
                     SRMLQRAVGVADDGIIGKVTLAAIERYSVADVGLLFQAERLEFYTKLKHFDRFGRGWI
                     NRMAGNLRYFAKDTVEE"
     gene            complement(12500..12925)
                     /locus_tag="PXC99_000586"
     CDS             complement(12500..12925)
                     /locus_tag="PXC99_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mor transcription activator family protein"
                     /protein_id="HDL5417067.1"
                     /translation="MSEFESVEHYLPETVKEIVGVIGLPATEKLIKAFGGFSFQFSNG
                     KLYFNKLKEVLGQDDAVKLQAYMGACEVYLPRCETALRMLRNQQIYADYCQLTEQGGL
                     SGRLAIMQICPKYSVCDRVAWEAVRYYQRKHTVSQATLF"
     gene            complement(12996..13211)
                     /locus_tag="PXC99_000587"
     CDS             complement(12996..13211)
                     /locus_tag="PXC99_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5417068.1"
                     /translation="MIENPEFGYTPSNLKMLRKHHNLTQTEVANILGVGQRIVMRWET
                     ELSSTAARSDMPYTKWAELLKNLQKNF"
     gene            complement(13230..13622)
                     /locus_tag="PXC99_000588"
     CDS             complement(13230..13622)
                     /locus_tag="PXC99_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417069.1"
                     /translation="MTDYQKLLNALLNDADEDCFAVYGLRATTDVHQVGDELGNSFVW
                     VDGEKTDEELDGICTMGIQNADEAGLLNAIKNLGRDACKKFDVEFKGFQSYCGQNFIL
                     VKGDSARGGEDKGESIIRNPIVVAVFNS"
     gene            complement(13748..14095)
                     /locus_tag="PXC99_000589"
     CDS             complement(13748..14095)
                     /locus_tag="PXC99_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417070.1"
                     /translation="MKELLLTTLCLLSLPAIAMTEKAEQETANALVSGDYQQLRNVAY
                     GMETGSFGHDHNPIAACALRRVILLVNSDKVDMTDFNNEAIACRKIEVTDNQQAWETA
                     FTIAKSISATKKK"
     gene            complement(14184..14609)
                     /locus_tag="PXC99_000590"
     CDS             complement(14184..14609)
                     /locus_tag="PXC99_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory protein GemA"
                     /protein_id="HDL5417071.1"
                     /translation="MQPQTRKQMIQKIHIGKNELKLDDNAYKMLLLEAVDKPSCSMMT
                     DSELMTVLQTMKAKGFVVKSKKYGKRPTASKTAPHRQGLINKIGALLYQSQKPWDYAH
                     AIAKRSFGIERVQWLTDDQLHKLVQILASYNHRHGMSVK"
     gene            complement(14593..15147)
                     /locus_tag="PXC99_000591"
     CDS             complement(14593..15147)
                     /locus_tag="PXC99_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417072.1"
                     /translation="MKLCKCPICHSDISFEALIEDDAGRELLNTIVNIGGNCGRAVVA
                     YLGLFKPQKNSLANSRALKIVQSLLELYPPSNVLEKALMDTVEQVRRNRRETGRCEPL
                     ANHNYLKKVYESVKPQFAVVRSEAKAVSSLEQQQRQADQKKHDAVMYVERMKQMGQLE
                     AVKNTESYQIWLKWQEEKQNATAN"
     gene            complement(15147..15317)
                     /locus_tag="PXC99_000592"
     CDS             complement(15147..15317)
                     /locus_tag="PXC99_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417073.1"
                     /translation="MEYQKIPEYRLCKKKSGEIVLQQLVICELTPATWHNPYPDSRTY
                     WVDLETIEEGTE"
     gene            complement(15388..15963)
                     /locus_tag="PXC99_000593"
     CDS             complement(15388..15963)
                     /locus_tag="PXC99_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5420 family protein"
                     /protein_id="HDL5417074.1"
                     /translation="MKFRFFKGDITQEPLKSIYADYQVSKEERKDKLNAILEKYPFND
                     GLISRSGWFHRIVIGIACKATNISQVLDVKGFKVGKFNDEFYLVKPDKRYEKGKELAE
                     DFKAINEIYEKHRDFSPYILKRLNMLYFVSDFSYSPTSGRSYLAVAGICENTLLVEMP
                     MPIDKNDEPFPEIAEGLVEIKESEFLAIQGK"
     gene            complement(15986..16168)
                     /locus_tag="PXC99_000594"
     CDS             complement(15986..16168)
                     /locus_tag="PXC99_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417075.1"
                     /translation="MTEQEKNELNSQLNEALMQIIQAQKYLKQSDFIRSGVYLGTVQD
                     LLPKVHLKLLTANRKH"
     gene            complement(16235..16381)
                     /locus_tag="PXC99_000595"
     CDS             complement(16235..16381)
                     /locus_tag="PXC99_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANR family transcriptional regulator"
                     /protein_id="HDL5417076.1"
                     /translation="MKTEQKATEFDRYKHYAEKAAEAERKGNYAEAQDHWKVAKLSAK
                     KTAN"
     gene            complement(16492..16698)
                     /locus_tag="PXC99_000596"
     CDS             complement(16492..16698)
                     /locus_tag="PXC99_000596"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417077.1"
                     /translation="MFITFNVNYTDKPVVVNTDKVCSIENINGNVTVHFCDNKKLIMM
                     DFDDKEYASLLNHLHILNQLKRKS"
     gene            complement(16700..17317)
                     /locus_tag="PXC99_000597"
     CDS             complement(16700..17317)
                     /locus_tag="PXC99_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3164 family protein"
                     /protein_id="HDL5417078.1"
                     /translation="MSKVTIGNEIYWKDADGNLKPEALVKEIDKERDELVRQFVSKAQ
                     ALSKALGDFKQSVFDDVGAFVSLSADKYGVKIGGAKGNITLFTYDGEYKLQLAVQENI
                     RFDERIHAAKALIDECLHDWSEGAKPELKALIDNAFEVDKEGNLSTAKILSLRRVEID
                     DARWNQAMTAISDSVQVIGSKGYIRFYKRDENGKYQPISLDMAGV"
     gene            complement(17330..17521)
                     /locus_tag="PXC99_000598"
     CDS             complement(17330..17521)
                     /locus_tag="PXC99_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417079.1"
                     /translation="MKKRRMIYALYVGEENVADGTAEELAERLGVEAKTVRFMSSPAH
                     NKRVKYNGKAIRTVKVGLE"
     gene            complement(17524..17844)
                     /locus_tag="PXC99_000599"
     CDS             complement(17524..17844)
                     /locus_tag="PXC99_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417080.1"
                     /translation="MQKVYSEKAGEMMNPLNAFIHDSLVKLEIATLECEAMELEVERV
                     EFEAKSPPRLVLRDNCKTQDLVKNGLASLFGMKTKGGRRYDSYQMQVRGVKCVWESER
                     VTKV"
     gene            complement(17855..18736)
                     /locus_tag="PXC99_000600"
     CDS             complement(17855..18736)
                     /locus_tag="PXC99_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5417081.1"
                     /translation="MKNQELRALMDSKGYQQKQVAQLLGVSVATVSLYLKGDYNGNVA
                     EMDRKVDELIERDKAKVVEAKYNAAFVPTLAARRGMEVMQFAHIEGEINVIFGAAGLG
                     KTQMLKEYERRNSSATLIEVDPSCTPKVLLRKIAEAVGANARGVNNELLESIVNKLKG
                     SERLLMIDEAELLSTRSLEFIRRIHDLTSVGVVLAGMPRLLVNLKGKNNELAQLYSRV
                     GFACDLGNALSEEDLGLLAESALGTNEFNAPLIKACHGNARRLSKLMRGVVRSSEINQ
                     TPISKDLVEQYSKMLIS"
     gene            complement(18740..20677)
                     /locus_tag="PXC99_000601"
     CDS             complement(18740..20677)
                     /locus_tag="PXC99_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5417082.1"
                     /translation="MKDWFSAKELAGISGLSKYPTNVTRQAKKEQWATRPLKGVKGGG
                     FEYHINSLPTEVQTEIRSRFMSAVVEAKPKKLPVVRAEVDVGNLTTKQREIADARMAL
                     VAYVLELEGSMSRIKAITYLCNLAKQGEMPPHLAELVAVANAKKTAKRTLSVRTLNGW
                     VVDYCKAENAEQRLKLLAPQVRQETKPEEIWWLSAFLGVYRQKNGICLTEAYREFEVE
                     WAYQYADNPLLLAQCPSLSQVQRAMNKLPLYVKEYGRRTGSHYKQLLSYVKRDWSVLR
                     ANDVWIGDGHSLKLKVAHPIHGKPFTPELTMIVDGAGRKVVGWSLALSENAFAVADAL
                     RHAISLHGVPAIYYSDNGGGEKNKFLDAEITGMLPRLGIRHETGIAGNPQGRGIIERL
                     NKTIGMTIARQFETGYATGADPETVRKTLYAVNSLANAKGELTPLQRKAQGKLPTWQQ
                     LIEVIQSVIDWYNNEHIHSEIRTTPARKYQQMLHAEDVVMLSPIELRDMSRPEFIRKP
                     DRGWVSWNNNHYFNLKLLDFDREEVVIGIDIHNAESVQVRTKDGRFICEAIWNGNTRE
                     AFPVAMVEQQRKERHKRRANLKQQQLDEINAELNPVLTIEQKNDFSLLATARKPKKEV
                     EPIFLTRAEKEDYEKKLAVGG"
     gene            complement(20692..20919)
                     /locus_tag="PXC99_000602"
     CDS             complement(20692..20919)
                     /locus_tag="PXC99_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5417083.1"
                     /translation="MNKKKRAQDMHRADIRAELMKKGITFSQLGIENGLSKTTVRNAL
                     DKPYKNGEEIIAKALGKTPAEIWPSRYPDVA"
     gene            21129..21857
                     /locus_tag="PXC99_000603"
     CDS             21129..21857
                     /locus_tag="PXC99_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5417084.1"
                     /translation="MKSFDKVWFSAKELEELDLPDLPKQATNITRKALKELWIKRDAV
                     GVKGGGNEYHITSLPRKAQEALGFKSGINAIKDSIVREITPEEQNKGSELSGTVLNNI
                     ISMIDSFASIKVSAGFGSFNEGVTKPDGQEPYADSLLHTLGVNAKKCAVFWASGDSMY
                     PTIDNGDQLLVDLSRNEIRGDNNIYIVQNGDSVWVKRVKLLWDGVELISDNREEYELI
                     KITADQAQNLQIIGQVVHIGHSLV"
     gene            complement(22142..22579)
                     /locus_tag="PXC99_000604"
     CDS             complement(22142..22579)
                     /locus_tag="PXC99_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF412 domain-containing protein"
                     /protein_id="HDL5417085.1"
                     /translation="MLSLFDAGQRYLNTLPNQKKLANFMPDYHIIRLVKFSSKVMPAF
                     ACFALVWQYCFTDPTQSILANSVLTAVFAISIPFQGLYWLGKRARSPLSLSLLEWYES
                     LRQKLISAQVKLEETQAVPSFQDFANLLKLAEETWGDEYFDEL"
     gene            22650..23459
                     /locus_tag="PXC99_000605"
     CDS             22650..23459
                     /locus_tag="PXC99_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5417086.1"
                     /translation="MAQALLYFTTKYLQSIEGYFMSIKFVDLLQQSWNFMRNQQAFSL
                     FAIVTIVVVQLVFILVSPNSPELMAESQPQQLQIDASKMVSILLPTILLGVVNLLINV
                     LMIFNIQSINDGNYRQFFQNAGNALKHFLPVLLLQFVMVLPLSLGASFAMASPETVII
                     ALPVLVVGFYFFIKLSLVIYAYLLEKPQKSLSESIKFTLQLSRGKMLPLILFCVISYL
                     LPGMLSRLFTVFGNDFIGIFITIVLSAVINVFMAIFSFRFYQVYRQMPAVR"
     gene            23468..24025
                     /locus_tag="PXC99_000606"
     CDS             23468..24025
                     /locus_tag="PXC99_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HDL5417087.1"
                     /translation="MKQLLEFIPLILFFVVYKMSGIQMASIALVIATIVQMIALKMLY
                     GKIEKQQIIMGGSVVFFGLLSAYFNEVKYLQWKVTIVYALFALVLLVSQFVFKTPLIK
                     KLLGKEIQLPEAVWNKINFGWAVFFLICMLLNIYISQYLSEEIWVDFKSFGIIGLTLV
                     ATVITGFVLYPYLKDAEKQEQKNER"
     gene            24015..24479
                     /gene="yciA"
                     /locus_tag="PXC99_000607"
     CDS             24015..24479
                     /gene="yciA"
                     /locus_tag="PXC99_000607"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase YciA"
                     /protein_id="HDL5417088.1"
                     /translation="MKDKPYGKAPEGKLILRTLAMPSDTNANGDIFGGWIMSQMDLGG
                     AILAKELAKGRVVTVTVDKMIFHRPISVGDVVCCYGKLMHIGRSSMQVKVEVFIKQVY
                     EGNRERYLVTEALFTYVAIDKEGKPRAVPRENNPELDEALSLIDLTPEKQGE"
     gene            24481..24762
                     /locus_tag="PXC99_000608"
     CDS             24481..24762
                     /locus_tag="PXC99_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HDL5417089.1"
                     /translation="MYYVIFAQDNPNMLEKRLEVRPAHLARLEKLQAEGRLLIAGPNP
                     TEDGSSVTGSTVIAEFNSLEEAQQWASQDPYVEAGVYSDVIIKPFKRVF"
     gene            24934..27825
                     /gene="glnE"
                     /locus_tag="PXC99_000609"
     CDS             24934..27825
                     /gene="glnE"
                     /locus_tag="PXC99_000609"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HDL5417090.1"
                     /translation="MLTTLIPLSQLNLPPNLQNSEQIQPLVTAISLSNFVHQTLQKQP
                     DLLAEWLAKFPTPDDCCNYTERLAKILARVENEEMLGRVLRQFRHRELARLSFIQSNK
                     LATVELVFQHLSDLAESLILAARDWLFQRCCAEYGTPKNTLGETQELLILGMGKLGGR
                     ELNFSSDIDLIFTYPDIGETEGGRKSIENSKFFTRMGQRLIKVLDEITADGFVYRTDM
                     RLRPFGDSGALVLSFTAMEDYYQEQGRDWERYAMIKAKILGEDSQNLNHRYLKQMLRP
                     FVYRRYLDFSAIQSLREMKEKISREVVRRNLTDNIKFGAGGIREVEFIAQTFQMIRGG
                     RDKILQERSLLKVLPRLAELNLLTQTQVETLHNAYIFYRQIENVLQAIDDKQTQTLPT
                     DEASQARLVFACQSYYQQDLYSEKTHWVEHSFNDWQQFMAVLSQYQQAVRQIFNEIIG
                     EEETQANCNPVNEKLAEWKDILHYNIRLEDLSAVLKGYPKVAENDYTEIFRHFSTTFQ
                     DWVKRPIGVRGREVLRNLMPRIADSIFKGEDHLLLLPRVLNIVDKITTRTTYLELMLE
                     KEQILPQLLALCSKSVMIAEQIARYPMLLDELMSHRGLTDVQAFEKYQSALQDYLIRI
                     PEEDEEALIDGLRQFKQTQILRIAAADILGVLLVMKISDHLTYLAEAIINAVVNMAWK
                     QVSQRFGVPEHLEADEKGFAVIGYGKLGGIELGYNSDLDLVFLHNAPEDSQTVGGKKE
                     ISSHQFYLKLAQKINSIFNLNTSAGVLYEVDMRLRPSGEAGLLVSTFNAYEHYQKNEA
                     WTWESQALVRTRCVFGAENLKQAFEKIRQSTLAQPRASGQLRQEICEMRQKMYQHLSS
                     HSAEQFHIKQDQGGITDIEFIAQYLVLAHSHQHPKMAVWSDNVRIFDSAVECGILSSE
                     QSEQLQHCYTALRNKIHHLNLLRKDSVVDASEFTTERAFVREMWQRLLA"
     gene            complement(27859..31017)
                     /locus_tag="PXC99_000610"
     CDS             complement(27859..31017)
                     /locus_tag="PXC99_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HDL5417091.1"
                     /translation="MITINENTIEQSAIATLQSLGWDYTYGKKILAGLEHEWRERTAE
                     VILKPLLAQAIAKFNPNLPACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKITYQ
                     LYGEQVSDVVQLIDFQRPENNDFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKN
                     PLKENADIGKAFAQLQTYKDEISDLFVFNQALVISDGIVARIGSLTADFDRFTPWRVV
                     DEKNQSKRIVFEDELTALLQGVMTPKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYG
                     VNEAVDCTLLAATGNRKIGVFWHTQGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRN
                     DLDGQLYATFCGGEALLKQTPIQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELA
                     HPVLNERENIIVITDEAHRSQYGFSQKINHKGEYREGYAKHLRSALPNASFIGFTGTP
                     IELDDKDTQEVFGKYVSIYDFEDAVEDGATVPIIYEPRQISLGESGEFSKVMEEAQQL
                     IDDDENSYNFRLREKLHSVDSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKL
                     YEKITALRPEWHSNDVLQGSIKIVMTSNASDPAEWQKHNQDKKTLEKRFKDPDDPLNI
                     VIVRDMWLTGFDAPCCNTMYIDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGL
                     TDELEKAMKQYTNAGGKEKPVRDISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQ
                     ISEPPKLLNAILTSANHILALDRIQPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGAL
                     KAVEPYKQELAFYDAVRATIIKNSTAPRNSSSENDRLLQLTALMNRAVQSDGVVDLFD
                     LLKKDRPNINLLSDEFLETVKNSPTKDLWLSAMERYLASQLREQSGANLATKKAFEQK
                     LKEAMNQYHNHNLSVLEILEELIALAKEFEARQKRGEALGLSPAEMAFYDALARNESA
                     VREMGDEVLMKLAKDITDKLRKSVTVDWQYKDSVRAKMRTLIRIALRTYKYPPDLQAE
                     AIEFVLQQAEEIAGEFAITETA"
BASE COUNT         8260 a         7346 c         6039 g         9425 t
ORIGIN      
        1 ccgcaccaag ccctgccgca atcattgcat ttgattcggt tgctccctta taccagccta
       61 caataattcg ctcactgtta aggcttgcgg ttaaggttgt gccggtggca taagtgccac
      121 gccagcccat tacaccaata gccggtttat cttcaatcgg ggcagaaacc gattctaaat
      181 ggctacgcaa ggcaagggca ttttcatcat ctgaaaacgg cgaaataatc acgttataat
      241 gcgtaccggc aacactcgcc aacgccggag caattagggc attacgctga ccgttatcaa
      301 acgcacgagc ctcaagggtt aaacctgttg ctgtattgcg tgttgcaagc gtgatttcat
      361 tgctgatttc gccttttgct tttgaggtca gtttaagtgt cgtttcactt tccacacttg
      421 ccaccacagg gctataactc gccgcattaa tcacattaac taaacgagcc acaatcgcct
      481 gtgcttcttc gccttttgcg gctgcaactt cgtaagctgt gccggcaatc gtaatacgca
      541 ccacaccggc ataagttact gtgccggtaa aactaacttg ccctgttgct gcaatacctg
      601 cctcgtggtc ttttaagccc accaccgtta aacggattag cggattattt tggattgctt
      661 ggcgaaccat taaatgagct accgagcctt taccaaataa attttccgcc tccacatcgc
      721 taaaaatctt ttgcggagca gtaaaagcag cctcaccgtt tagcattggt gcaacaatta
      781 gcacctcttg ctcattggtc ggcaaggtgg ttactgcatc tttgttgttg tattcggtca
      841 gcacacttgg tttgcgaata ctgttcggga ttttctcaaa ttcaattttt gacattattt
      901 gccccctgtt tctttagcgg atttggtttc tttgacgaca atcaaatcgc catccgcaat
      961 gcggcgttga tagtaaaggg tgttttcaac ctctactgcc tcttgttcaa tatagtgatg
     1021 cggtcggttt tctaccggca cacgcacccc tttagcggct ttcactttta acatctaatc
     1081 accatcctta aattctgttc taaatgccgt ttcggcattg ttattcgggt caaaaatccg
     1141 attattaaag cccgataaat cgccttgcgg ttcatctagc ttgccttgat actgcttaaa
     1201 gacttgctca ttcggctcaa ccccttcggg gaatctacca tcatcaagca cattgcactc
     1261 gttgtagctg atttcaaact caatagcata agcagagagt ttctctttct tcacttccgc
     1321 attattccaa atcgtgcgga ttcgcttagg ctggataggg tggactaaac cgtctaaagt
     1381 ctggttaatc aataaggttt tcaccgctcc cagcaactga ttaaccccca cctcacgact
     1441 tgttacccca cctaaacgcc cagcagtctg atttcgcatt gagcgagtaa taaccaacac
     1501 cacaaacaca tcagtggctt gatagcgttt acctcttact cccattgatt tcgcctcgaa
     1561 cgccgagcca ccataagaga caagacaagc aggcaaacgg agaacatcta acttctcatc
     1621 gttaatttcc ccggcatacc cagcaacggc atacaccatt ttgcctaagc ccagcgttaa
     1681 acgctcaatc aaagcacgct caattttgct aatcatcgct tatcacgccc ccaaatacgg
     1741 ttgcccccgt taaaaaactg cactgtattt tcgccagtag ccgattcttc ctcattggtt
     1801 tcatcaaccg ctaacgacac tacgccctta gagatgtttt ccagctcttt taagcaaagt
     1861 ttgtagcggt tttccacctc ttcggtcatc gttactaatg atttgctggt taaatgataa
     1921 cgagccaaat cacagcaaat acgctttaaa ttttgcggta cagtctttaa tggcagacgg
     1981 taacgcccac ttaaatagcc atcaatttgg ctggaagagt ccgctaaagc tacttcaaga
     2041 gtcgcttcat caaccacgcc taccatttca cggtcggtta gctcaatgga ttcctgttcg
     2101 ccaattcgca aaacgaaatc atcaaccaac gcatacatta cgcatcgccc tcaacaacag
     2161 gtacaaactc caaataaggg tcgttggcta aggtaataat ttgttcatca ctcaaggctt
     2221 tacgagcaat ttctaccgcc gtttctttat taaaacggta gccacaacgc ccataggtgg
     2281 cttgtgggtg gatagatttg agcttaactt caaaagcaat aggatttatc aaagcaccgt
     2341 catcaggctt agtttcactt tcaggcggtt taggttgttc atccgtttta tcttcaggct
     2401 gttcattcac cttatcttca agcggtgtgt tttcgtttgt gttcaaagct tcattgtcat
     2461 ttttctttgg ttttgccatt ttgctaccct ctcaaaatgg gcgtattgct acgcccaaca
     2521 ttaaacttat tcagcaataa atggattcac taccactttt aacacacctt ttaaggtgtt
     2581 ggttgtgccg tcaattaatt ctgcttcgag taatttgcgt gcagcaaact caagcgaagg
     2641 tggcacaagc aaagtggtcg ggcgaatatt taactgctta tcgccatcgc cttttaaggt
     2701 gcgcattgca gttaatactt tttcaagggt ttcactattt aactcactat cttcaacacg
     2761 gtgaattaac tgccagaaac caaaaccggc attaccacga gcacgcacac cccataaata
     2821 ttggtctttc ataaagacgt ggtctgactc acttggatca aacttcgttt caatttcagg
     2881 tgtagtacgt tcttgccaaa ttaacggctt aatggcttgg ctatcatcta gcacatagaa
     2941 cgcaggctta ccgctggcag agcctgtggt gatattactt tgtgttttac ttgtgccagt
     3001 tccatcaaca ttctgataaa cagggtgatc ggtatcaaag aagttctgcc cgtcatagca
     3061 aagggttgtc ttaccttttt tcaacaaact aaataccaaa tcatcaggta attcagccgc
     3121 actttgtgcc gcttgtttca ccattggggt aaataagccc acttggtcat cttcaatggc
     3181 agtacgaggc acagcaacgg ttgattcaaa taatttattc tcaatcgtca ttccttgtgc
     3241 ttgcatattt ttaatttgac ggtcgcccac ccactcttgc attttcggga attgtcccag
     3301 ccaagcatag gtattagtag cggtgctgga gcttaccttc attgcaaccg ttccccattg
     3361 tggttcaagc acttttaaac cagcactaaa ttctttacga aatgcagtat caagtgcttt
     3421 taataattca gattttttaa acattacttg gattcctctg ttttatattt ttcaatgtaa
     3481 gctgcttcgc ttaaaccaag cgattttgct gctgcaattt ccgcagcaga taacgccact
     3541 ttctccgtac ctttgttcgg gtcttcaccc cccgactgcg tacttgctaa agcggggtta
     3601 ggtgttaccg ttttcaaaaa gtcggataaa gccactaaat cttgcttacc gagcttttcc
     3661 gcccacgctt tttgagccgg caataaccga ccgtcagaaa gagcggtttg aattaacgca
     3721 tcacgctctt tatcgttgat ttgctgtttt aagccgttca gctcggtttg cactgcttgc
     3781 aagtcgctta acgccacaaa cttcgccggg tcagggtgat tcactttggc agagagtgca
     3841 accacttggc ttttctcttt tgccagctcg gtataaacat cacttaacgc caccgggctg
     3901 tcgcctttgg ctttctcaag tgcggtcagt ttttcggtaa tctgctcatc ggtcgcattt
     3961 gccgacaatg caaataattt aattaagagt tctttcattt ttggattttc ctcttcgggg
     4021 gttaaaaatt tggcaaattg gctagacatc gcaaccacct cttgcagatt atgcaaggca
     4081 gggcggttag ttaaggcggc attaagtacc ttaattacca ttccgctgcc gtctgtcaaa
     4141 aacagtggcg agagatagcg ataaacgccg tctttaatct cttgggtcgc ttgtggtgtc
     4201 cacttaacat ccgcaaacaa gccttcgccc gagatatatt ccgccttggt aatccaaccc
     4261 gcagcagggt tgcctttgcc gttctcggcg atgtacaggg tctgatgctc ataatcaatc
     4321 atcagatcaa tcgcagtgtt gttaatatca tcggctaacg catagccatt ctcgtcacct
     4381 acataccaac gtcctccacg cccgtcttga gcctcaaacc aaccaaaagg gaaaagttga
     4441 atacgtccat ttgcctcttg gttgagttta aaactcaatg caatggggtt tagtttgaat
     4501 ttatgcttaa acacaaaaac acctcaaaac aaattaatga ggctaaagaa tagaagattg
     4561 agaaaaaaga gtaacgggga gcaacttcca caagttgcaa attttcagaa aaaaacaacc
     4621 gcttgtattc agcgaggaat gtaacccatt ttaaaacgct ttaaatccgt tttaaaaaat
     4681 tttaaaaaag ttggaatgat aaatcaccat aaaaaaaaca aaaacgccac agagagcgat
     4741 ttaggggcta tctgtggcga ttatcttatc gcttaatcca gcagtttttg ccagtaggct
     4801 tgcacatcgt ccaaaatatc ttgcctgtct tgcgaggtta attgtaaaaa aggtcgggct
     4861 tcaattttta ctttacgccc acgcccagcc ataccaccga attgatgaat agcagcataa
     4921 ggctcatttg tgccaacaat cgccgaatca ttattataat cagcagtaat gctgcccatt
     4981 aaattttccg tatcaactaa cggcgtgcct tgccgatgtt ttatacccag ccatttcggg
     5041 cgaccgccct catcaaaatt ggtcagtacc gccgattcca ttttgccggc aatattccgc
     5101 atcaagtctg ttttatttgc cgttttagca gcaatacggt taagcgtggc aataatttca
     5161 tcaatgccgt ggatttggat ttcaatcatt tttaaccttg caagttgatt tttaaaataa
     5221 acaggggtat attcctttta cggttattag aaaagcggtg ataatctccc tgccgcagcc
     5281 tatttgagat ggcaagtcct gctcaaatga ccgagagcgt gtgtaagtga ccgggagcct
     5341 tacctaataa ccgtattttt caacagcagc ttatccaatt ctttttgtcc aatctccctt
     5401 gttgatacca gaaataattc accaaactct tctaagtatt tcaccacaac aagaatacga
     5461 taatgctcaa agtttcgtat aaagctgaaa tttttgcctt cttgcaaaat atgattaggc
     5521 tgaaaaatta catcaggaat atttgcatac acatcaaacc caaaatcctg cccctcacgg
     5581 ctataaaact gcttaatcag tgtgtcatcc gaaagccata ccgtgccgac tttactgtcg
     5641 attaagcgtt gtgtttcctc acttaaccga ccagcagcaa atttaaagtt ttgattaagg
     5701 gcatttcgca ctttaaccat ctcatcaggc gagagttttt tcgccccatc tttggcaagt
     5761 gccacagcct cttctaactt gttaaacgcc tgcttaaatt caccaccgct catttctgct
     5821 ttggtaaatt ggtaagccag cttttcaggg tataaatcca aattcggctt ataggttaaa
     5881 cgccccacat tataatcaaa acctttatca gccaatcgca ccgtaccatc agccaattta
     5941 aagccaatgg tttcctcttg gttgcctaac ttatctttcg gtcgttttgc cttcactaaa
     6001 aacggctcgc tactgccgac ttcgtcaatc cctttacgct ttaaatcccg ctcacttaac
     6061 gcaatcacgg tacaacggca attaaagccg ttcggcggat aaaaagtcgc ccaaaacgga
     6121 tcgtcataac gataaatctt accctgtaat gcttggtgag cagggcgggt gcgttggtcg
     6181 cctaccgccg aatattgcca ataagggcga ttatccacat tatccatata ccgctgataa
     6241 cgagccgcag aataagcctg ttgcatattg gtacgataaa tcgtattcaa gcggcgaggc
     6301 gtgccgaaat gctcgccggt tttcgggtcg gcaagcagtt tgccatcaat gccacgacta
     6361 atcgtcgtgt ccatacaccc agcctttccg ttcaaattct gccgtaagcg ttttcttcca
     6421 ttcattaaag gatttcccct cacgccgtgc tttttccatc gactcataaa tatcacgggt
     6481 catttcaagg ctagtgagct tgctaatggt ggcggctcgc cccaatgcag aatcaaataa
     6541 ttcctgctta aacactttat tcgcaagcaa cttcttctgc cgtaaaaact caatcgcctg
     6601 cttaggctct agtccaatgg caaaattaac tttctgcatt cgcagcccct aataaatccg
     6661 ccaaaaataa cgcattcgct aaatagcggt cgtgttcttc actcactaaa tcagggtagg
     6721 ctgccgccaa tttttctgct gcctcatcat aagagctaca cgccattacc accgccaccg
     6781 cctttttcgt gatggggtca aattgggcgt taaaatccgg cacggaaaaa gcctcgtctg
     6841 ccaaatcatc taaggcatct tgctctttaa tgcccgtttt ggtttgggcc gacaaagcgt
     6901 gaaccttgcc cccacaaccg cattcgcaag cggtcatttt ttgcggaaaa tttgcggata
     6961 accccaccgc ttgtggcggg gcagaacgcc ctaacaccgc ttcattttct tgagcttcgg
     7021 gaataccgag tttatccatc gcccactgca ccggaatcgg cattccaata tccaccaatt
     7081 tcggcaagct ctcggcaaat aacgccaagt cggcaggctc tttggtatca aactcaaaac
     7141 tcggaatgcg ggttgggtcg atattgccaa aattaatttg cagaaacggc agaataattt
     7201 gttgggtaaa cgtctgcccc agctgtttca cgtccgacac caacaaatca cgccgcactt
     7261 cgttatgcac attgccgagt gcattggtag agcttttgcc gtctgcaccg ctggttaagg
     7321 tttgccccaa aatcaagcgg gcgatagact tctcacacca atccaccatt tgcaaaaacg
     7381 gattattgcc ggctgcaccg cctgcattag cggcgttatg caactcaata ctcatcgact
     7441 ccggcataat tccggcagcg ttgtgtccga tttccgctaa tgcacgttta agcgtttgtt
     7501 tttcgtttgg tgttgcccct gcaccgtatt taccaatgcg gataggcata ccatacagct
     7561 ccaaaaactc ggcaaagtcg tggatagagt agtgtttaaa catatacagc caagccagcg
     7621 agcggaataa attattgcgt gccgcctgtg tggagcggga tttatgcgta tgcaccaccc
     7681 agccaaattc tcgtaatggc tcaccttcgg tattttgtcg ggttttcagc aacagattgt
     7741 cgtgcttatc ccacttaaac cacgattgag gacggtggat aaaggcgttc ggataccaca
     7801 atttaccgtt aaacgcccat tcaatttcga gggcagcaaa accgtgtccc acagcgtcca
     7861 tacagtccat caccaaatct tcaaggttgc cgagctgata aaataactca tcaacctcat
     7921 cacgcagttt ttcttcctgc ggtgtggcat tgcgaggggc aacaatcgcc caatctacgc
     7981 ctaatgcggc acgcttacgg gtttggatat tggcaaaaat agagctgtcc cgctcctcaa
     8041 tatccataaa taattcgtgt tgagcggtaa tatcgccatt ctccgtatct tcaaaaatcg
     8101 ctttcatttt agcaggcgta ataaaattgc tcggatggtc ggagagtacc cgacctgtag
     8161 cggtaatttc ggctaaatcc gtctgcaatt cttgattttt aatcgggttt aaattcggtt
     8221 taatctgctt gttatgcttc tttttgctca taaattttcc ttttcagagc ttagttacgc
     8281 tcaatatagt ccccctcttt agcaaagagg ggagttacat taatgccgcc acttactgcg
     8341 atactcaccg tcaaaatcat ctacactctc ccactcaatc ggggcagagc tgctgagtgc
     8401 atttcgccat aacatttcca acgcatccgg accatcatcg tgatcggctt tcggaaaatg
     8461 gcgaagctgg ctttcaagcg tagattgcga gcggtgcaac aaaatcaaac cgttggcaat
     8521 atgcggttgc aagctctcaa tccgtaacat cttgtcactg ttcggcttgg ttgccgttgc
     8581 cggcaccggc ttaccacgct gggcagaacg cttgaccagt tccgtctgca aaaactcctg
     8641 aaattgcacc gtctccacaa accagcggtg acagttatat tgcgaatgca gtctaatcac
     8701 gtcctcaata attaaatccg gcaatcgttt tttgatttgt gcctcaacaa catagagctt
     8761 gccactctca cgatgatagc caccgaccaa aattgcagat gggtcacggc ttgccccagc
     8821 tttccccatt gaggggtcta acgccccgaa ataaatcagg tcatcaggca gttccgtcca
     8881 atactggata ctgttggcaa aaatcgcatc atcacccgag acagggtcat tttgatactc
     8941 ggagtcaaat gctgagtgcc catcactagc acggattttc atcaagtaga ggatagggcg
     9001 agctaaccaa gagactaacg ctcctttatc catttctgct ttatgctgtt gataaaagag
     9061 atcagacata gtgtcatcgt ccccttcttc cgagaggtat atattttccc attcgtccca
     9121 taacgccata ttgccgggaa agcgtaaaat ggctttaaaa cgaactcgcc gccaaccttt
     9181 tgtatttaaa atacggctaa gcacactgtc ataatgtaga attgtgccga catagataac
     9241 atcaaacttt tcacctgcag caccaagttt taaaactgct tttaaaaccc agttatgcaa
     9301 tttattacgc tgtgcaggtg tttctacgct ttcatcattc tcaatatcat caagtactac
     9361 taaatccgga cgataagctc cgtggcgacg accacgcaat ttttgcccag cccccacagc
     9421 ttcaactttt tgttttttag ccgtcataat gacacctgca cgccaaacct tgccttgtgc
     9481 aacctcgggg aaatcaattc ttaaacgagg gttagattca atttccactt taatagcttc
     9541 aagcatactg tatgcctgtt ctttggtgtc catcgcaata atgatgtatc tttttaaatc
     9601 acggactaaa caccacagcg ggaataattg cgtacaaatc gttgattttg cctcgccacg
     9661 aggggctgca atcgcttggc ggactgactt agaaagatca cttaccgaaa gcggtaaatt
     9721 ctcaaagaga taatgatgca actgtgattt atgttcagac cgcacatagt gtggaaaata
     9781 agcctgcaca aaatactcaa agccgtgaac agggtctaaa accttttgac ggcgttcgct
     9841 aatggcttgt ggtttatcgt cccaaccctc aaaactcgct tcgatatttt gttgtaactg
     9901 tcgccgtaat tcttccagtt ctttttcaaa ttctttgatt ttcataaatt acatacaagc
     9961 tgcgataagc aacaaccagc cccaaccgtc tgtaccgttg agcattagtt ttattgctcc
    10021 gaaaatacaa gcaagttgga caatccaacg gaaagagtaa tgcttatgca ctacagtttg
    10081 ttttttctta gccattactt aaactccttt ttgaattgca cttctagctc atctaacatt
    10141 tctaaaaagt caggcaataa atgcggtttc ttggttttga cgatattcgc catcatctca
    10201 atcgcacgca tagcggttgc cattgcactt gtttcaggca atagtttctt gctcgatgcc
    10261 gtcatcttcg caaacgaatc agccagagca gctaatgcct caaccttagc tgcggttggc
    10321 atttcggtgt tttcctcaag ctccgtcatc aacgtgcggt acttaattaa aaaaccggct
    10381 aacaagcctt gagcgatatt ctcaatacca ccgcttgcca tcgcttgcac atcacgagct
    10441 ttttcccagt tatcaccgtt cttttcagca gccgctttcc aacgccgtgc cgtgccgaat
    10501 gatacccctg cacgttctgc tgccatttcg aggcttaaac ggtcaaacac ataggcttgc
    10561 cgaaccgctt tttgtacttc aacatcgtgt gccatacgcc ctctacattc caaatttcag
    10621 gcgtaacaac tcaaaaccca cagcaacaat gccaccaccc aagccaccgg caactacagc
    10681 atcacggcgg tttttacgtg ccatttcatt cactaaacga ttagtcgctt ggatttcacg
    10741 gtgtaagcgt tcgatttctt cgttttgttt atccacctta tcgtttagct catttaatcc
    10801 acctaaaatc aggtctaatt tttccgaatc ggtttgcttt tgttttttac ggctcattac
    10861 ttatccgcct ttttatcaag tttttggttt acttctttga gcgagtctaa aatatcgtcc
    10921 agcttttcct taatccctct attcacttcg tgggcaagct ctttggattg atatttgctc
    10981 tccatttctg cttttagctc ttttaccgtt tgctcattgc ggttgatacg atcaaatatg
    11041 accttgccta caaacgccac taacggagca actacaaaag agatcagcat ctgaaacagt
    11101 ttttcatcaa tcataacgcc cccttttggc tcgcccgacc gggtgttgat taccttgtgc
    11161 caccgccgca cgcaccacgt tatgcaattc tgcaaggtca ggacggcggc gataaaaacg
    11221 ccattgttgc caacgctgtc tgagtttttt aattaacttc attctggcaa acttcctcat
    11281 aggtcagatt gtgtgcaagc acttggcgtt tcgtttccat tgtgtccgca cggctcgggt
    11341 aaatcagacc gaacgccgtg caacccgttg tcgtcacgga agtaaccgtg ttggtgcaac
    11401 tgctcatcaa tggcactagg ctgaatacgg cgagtttcac taacgtgttt ttgctgaatt
    11461 ttggcatttt taacctctgc atttttttgt tgaatttcga ccgcttgttg ctgcttttcc
    11521 gcctttaatg tagcggtaag tttccgctcc tgctttaatt gccagctttt ataaaaggca
    11581 taggctaaaa ttgtgcttac tacaccaacc acacctgcaa tttgttgagt aatcattctt
    11641 cagcctccct tgagcgttct ttttgtttta acgcacttac cacccctttt gtggctgggc
    11701 tacccaatac acaaatacca gcataagcaa accaccagtc ggaaataaac ggcttatcgt
    11761 aaaggtaggc gtgaattaaa atgcccgata acactaacca gctcataaac tgaataaagc
    11821 cagtggtgct ggctgtgccg tctttattgg taattaaatc aagtaaaaat tgcttcacga
    11881 ttattcctcc accgtgtctt tggcaaaata acgcaaatta cccgccattc ggttaatcca
    11941 acctctacca aaacggtcaa agtgtttgag tttggtgtaa aactcaaggc gttctgcctg
    12001 aaataacaag cccacatccg caaccgaata acgctcaatc gcagccaaag tcactttacc
    12061 gataatgccg tcatcagcca cacctaccgc tcgctgtaac attcggctag cattgcccga
    12121 accgtggttt acacacgcat ctaaaaactg aaaagccaac tcaggcggga actgctcaca
    12181 gttataacgt tgccaaaagg ctttgaggta aatagttttc gcatccgcac ggctcattgc
    12241 acgcatagag ccggtatagc cattcgcacg ggcagtatgg atagtgatac cccaattcgt
    12301 ttcgccaccg gggtctttcg ggtcgttcac ataaccgccc tcgtgtccga taagacggtc
    12361 aaatgcaaga ttaaagtcag caatagttgc cttgtttttg ataggttcag tcataaaaaa
    12421 agcctcttta aattcaatga tgatttaaag agactttaat gatttagagc aacggggagc
    12481 aggcgaaagg attccacact taaaacaagg tagcttgcga aacggtatgc ttacgctgat
    12541 aatatcgtac tgcctcccac gcaacacgat cacacacgct gtatttaggg caaatttgca
    12601 taatcgcaag cctgccactt agccctcctt gctcggttaa ttgacaataa tcggcataaa
    12661 tctgctgatt acgcaacatt cttaatgcgg tttcacaacg tggcaaatag acctcgcaag
    12721 ctcccatata agcctgtaat ttcactgcat catcttgccc taatacctct ttgagcttat
    12781 taaaatagag ttttccgtta gaaaattgga atgaaaagcc accaaaggct ttgattagct
    12841 tttcagttgc cggcaaacca atcacgccca caatttcttt caccgtttcc ggcaaataat
    12901 gttcgacact ttcaaattca gacataaaaa atccccttga ataatttcca cgaaagccat
    12961 tatccaaggg ggttattcaa atctgtaata cttacttaaa aatttttttg caaatttttt
    13021 aaaagctcag cccattttgt gtacggcata tctgatctag ctgcggttga tgacagttct
    13081 gtctcccacc gcattactat tctttgcccg acccctaata tgttagctac ctctgtttgt
    13141 gtgaggttat ggtgctttct tagcattttt aagttgcttg gtgtgtatcc aaactctggg
    13201 ttttcaatca ttcacctccc tccattaaac tagctattaa atacagcaac aacgataggg
    13261 tttctaataa tgctctcgcc tttatcttct ccgcctcttg cactatcgcc tttaactagg
    13321 ataaagtttt gcccacagta tgactggaaa cctttaaatt caacatcaaa ttttttgcaa
    13381 gcatcacgac ctagattttt aatagcattt aacaaacctg cttcatctgc attttggatt
    13441 cccattgtac aaatgccgtc taattcttca tctgtttttt caccatcgac ccaaacaaaa
    13501 gaatttccta attcatcgcc aacttgatgc acatctgtag ttgctcttaa accataaaca
    13561 gcgaagcagt cttcatcggc atcgtttagt aaagcattta aaagtttttg gtaatctgtc
    13621 attttaattt ctcctgtttg gctatgggtg cattatagta atataattac ctattgcaag
    13681 tgatttttcg tttttttctt aaattttttt atgtaaataa aaaagaccgc ttgaaagcgg
    13741 tctaaattta ttttttcttg gttgcagaaa tggattttgc aatggtaaag gcagtttccc
    13801 aagcctgttg attatctgta acctcaattt tacggcaagc aatcgcctcg ttgttaaagt
    13861 cagtcatatc aaccttgtcc gaattaacaa gcaaaataac acggcgtaaa gcacaagcag
    13921 caataggatt gtgatcgtgc ccaaacgaac cagtttccat tccgtaagct acatttctta
    13981 actgttgata atcaccactt acaagagcat ttgctgtttc ttgttcagct ttttctgtca
    14041 ttgctattgc tggtaacgac aataagcata aggttgttaa tagcagttct ttcattttaa
    14101 atacctttaa aagttgatta aaaaacacct aaaatctacc acaaaaaagc ccactattta
    14161 aagtgggcta tgcaataaat ttattattta acactcattc cgtgcctatg gttataactc
    14221 gccaatatct gcactaattt atgcaactga tcatctgtca gccattgcac ccgctcaata
    14281 ccaaacgagc gtttggcaat ggcgtgggcg taatcccacg gcttttggct ttgatacagc
    14341 aacgccccga ttttatttat caacccttgc cggtgagggg cggttttact tgctgttggg
    14401 cgtttaccgt attttttcga cttcaccaca aaccctttag ctttcattgt ttgcagtacg
    14461 gtcattaatt cgctatcggt catcattgag cagcttggtt tatccaccgc ctctaacaac
    14521 agcattttat aggcgttatc atccagtttt agctcatttt tgccgatatg gattttctgt
    14581 atcatctgct ttctagtttg cggttgcatt ttgcttttcc tcctgccatt tcagccaaat
    14641 ttgataactt tcggtgttct taacggcttc cagttgcccc atttgcttca ttcgttccac
    14701 atacatcacg gcatcgtgtt tcttttggtc tgcttgccgt tgctgttgct caaggctact
    14761 cactgctttc gcttcacttc ttactactgc aaattgtggc ttcacgcttt catatacttt
    14821 cttcaagtaa ttatgatttg ccagcggctc acatctgcca gtttcacgcc gattccgtct
    14881 tacttgttcc accgtatcca ttaaggcttt ttctaacaca ttagagggag ggtaaagctc
    14941 caataaactc tgcacaattt tcaaggctcg gctattggca aggctgtttt tctgtggctt
    15001 aaataaccct aaatacgcca ccaccgcacg cccacaattc ccaccgatat tgactatcgt
    15061 atttaacaac tcacgccctg catcatcttc aatcaacgcc tcaaacgaga tgtcggaatg
    15121 gcaaatcggg catttgcata gtttcatcat tctgttcctt cttctattgt ttcgagatca
    15181 acccaataag ttcgactatc agggtatggg ttatgccaag ttgctggagt tagctcgcaa
    15241 ataactaatt gttgtaacac aatctctccc gatttctttt tacataaccg atattcagga
    15301 attttttgat attccatttt atgctcctat aaaacacatt attcagccca cttaaatagg
    15361 ggttaaatgg gctgtaaatg ggttttatta cttcccctgt attgctaaaa actcactttc
    15421 tttaatctca accaatccct ctgcaatctc aggaaatggt tcatcatttt tatcaatagg
    15481 cattggcatt tcaaccagta aggtgttttc acaaatgcct gctacggcta aataacttct
    15541 acctgatgtt ggggaataac taaaatcact tacaaaataa agcatattca aacgttttaa
    15601 gatatagggc gaaaaatcac gatgtttctc ataaatttca ttaattgctt taaaatcttc
    15661 tgcaagttct ttcccttttt cgtaacgttt atcaggtttg acgaggtaaa actcatcatt
    15721 aaatttaccg accttgaacc ctttaacatc taaaacttgg ctaatattgg ttgctttaca
    15781 agcaatccct ataactattc tatgaaacca gcctgaccta ctaattaatc catcattgaa
    15841 aggatatttt tctaaaatag cattgagctt atccttgcgt tcttctttag atacttgata
    15901 atctgcataa atgcttttta gtggctcttg ggttatatcc cctttaaaaa atctaaattt
    15961 cattcttaac tccttactgg ggtggttaat gtttccgatt tgccgttaat aacttcaaat
    16021 gcacctttgg caacaaatcc tgcaccgtgc cgagataaac accactgcga ataaagtcac
    16081 tctgttttaa atatttttgt gcctgaataa tctgcattaa cgcctcgttt aattggctgt
    16141 taagttcgtt tttctcttgt tcggtcatca tctcctccta aaacggtttc ttatgcatac
    16201 gtttacaaaa taccgctcgt tgccccgccc agtctcagtt agcggtcttt tttgctgata
    16261 attttgcaac tttccaatgg tcttgggctt ctgcataatt gcctttacgt tcggcttccg
    16321 ctgctttctc ggcataatgt ttgtagcggt caaactcggt cgccttttgt tctgttttca
    16381 ttttttcctc ctgtggttaa aacactttat aaatgccctt ctatcttgtc cccctctttg
    16441 aaaaagaggg gctaggggag atttttaaag ggcattgaaa aggtttttta actaagactt
    16501 tctttttaac tgatttaaaa tatgcaaatg atttaataac gatgcatatt ctttatcatc
    16561 aaagtccatc attattaatt ttttgttatc acaaaagtgt actgttacat tcccgttaat
    16621 attttctatt gaacaaacct tgtctgtatt aaccacaaca ggtttatccg tataattaac
    16681 attaaaagta ataaacattc taaacccccg ccatatctaa actaatcggc tgatactttc
    16741 cgttttcatc acgtttataa aaacggatat aacctttact accgatcact tgtacgctat
    16801 ctgaaatcgc tgtcattgct tgattccatc ttgcatcatc aatctcaaca cggcggagag
    16861 agagaatttt tgctgtagat aaattacctt ccttatccac ctcaaacgca ttatcaatta
    16921 aggctttaag ctccggtttt gccccttccg accaatcgtg caagcattca tcaatcaagg
    16981 cttttgctgc gtgaatacgc tcatcaaagc gaatattctc ttgcactgct aactgcaact
    17041 tatattcacc gtcataagta aatagtgtga tattgccttt tgcaccgcca atttttactc
    17101 catatttgtc agccgatagg ctgacaaaag cccccacgtc atcaaatacg gattgtttaa
    17161 aatcacctaa cgctttgctt aacgcttgtg ctttgcttac aaattggcga actaattcat
    17221 cacgttcttt gtcgatttct tttactaatg cctccggctt taaattgcca tcagcatctt
    17281 tccagtaaat ttcattaccg attgttactt tactcataat acttcctctc tattccaacc
    17341 cgactttcac ggtgcggatt gctttaccgt tatatttcac tcttttgttg tgagcagggg
    17401 acgacataaa ccgcactgtt ttcgcctcca cccccaaccg ttctgctaac tcttccgccg
    17461 taccgtcagc cacattctct tcgccaacat acagggcata aatcattcgc cgttttttca
    17521 tttctacacc ttcgtaacac gttcagactc ccacacgcat ttcacccccc gcacctgcat
    17581 ttgatagctg tcataccgtc tgccgccttt ggttttcatt ccaaacaggc ttgccaagcc
    17641 gttcttgact aaatcctgtg ttttgcagtt atcccgtaag accaagcggg gtgggctttt
    17701 cgcttcaaac tccactcgtt caacttccaa ctccatcgcc tcacattcca aagtggcaat
    17761 ttctaacttc acaaggctgt cgtggataaa cgcatttaag gggttcatca tttcgcctgc
    17821 tttttcgctg taaacctttt gcataacttg ctccttagct aatcaacatc ttgctatatt
    17881 gctcaaccaa atctttacta attggtgttt ggttaatctc gctagaccgc accacgccac
    17941 gcattaactt acttaatcgg cgggcattgc cgtgacaagc tttaattagc ggggcattaa
    18001 attcatttgt acctaacgca ctttcggcta atagccccaa atcttcctcg ctcaaggcat
    18061 ttcccaaatc acaagcaaaa cctactcggc tataaagctg tgccagctca ttatttttac
    18121 ctttaagatt aaccaacaat ctcggcatac cggctaacac cacgcccacg ctggttaaat
    18181 cgtggattcg gcggataaac tccagcgagc gggtcgaaag taattcagct tcatcaatca
    18241 ttagcaacct ttcagagcct tttaacttgt tcacaatgct ttctaatagt tcgttattta
    18301 cccctctggc atttgccccc accgcctcgg caatcttgcg gagcaagact ttaggtgtgc
    18361 aactcggatc aacctcaatt aatgttgcag agctgtttct gcgttcgtat tctttgagca
    18421 tttgggtttt acctaagccg gctgccccaa aaatcacatt aatttcgcct tcaatatggg
    18481 caaactgcat tacctccatt cctctgcgtg ccgccaaagt tggcacaaaa gcagcgttat
    18541 atttcgcttc caccactttt gccttatcac gctcaatcag ctcgtctact ttgcgatcca
    18601 tttcagccac attgccgtta taatcgcctt tgagatacag actgactgtg gcaacggata
    18661 cacctaaaag ctgtgccact tgtttttgtt gatagccttt gctatccatt aaggctctaa
    18721 gttcttggtt tttcatcgtt tagcctccca ctgctaactt tttttcgtaa tcctcttttt
    18781 ctgctcgggt caaaaaaatc ggttctactt cttttttcgg ttttcttgcc gttgccagca
    18841 agctaaaatc gtttttctgc tcaatggtta aaaccgggtt taattccgca ttaatctcat
    18901 caagctgttg ctgtttaagg ttggctcggc gtttatggcg ttctttacgc tgctgttcta
    18961 ccatcgccac cgggaatgcc tctcgggtgt taccgttcca aattgcctcg caaataaacc
    19021 tgccgtcttt ggtacgcacc tgcacgctct cggcattgtg aatatcaatc ccgatcacca
    19081 cttcttcacg gtcaaaatcc agtaatttca agttaaaata gtggttgtta ttccaactta
    19141 cccaacctcg atccggctta cggataaatt ccggtcggct catatcccgc aactcaatag
    19201 ggcttaacat caccacatct tctgcgtgca acatctgctg atatttgcgt gccggcgtgg
    19261 tacggatttc cgagtgaata tgctcgttgt tgtaccagtc aatcaccgat tggattactt
    19321 caatcaactg ttgccacgtt ggcaatttgc cttgggcttt acgttgtagt ggggttaatt
    19381 cccctttggc atttgccagt gagttcaccg catacagggt tttgcgaacg gtttccggat
    19441 ctgcaccggt tgcatagccg gtttcaaact gtcgggcaat cgtcataccg atggttttat
    19501 ttaagcgttc aataatgcct cgcccctgcg gattgcccgc aatccctgtt tcgtgtcgga
    19561 taccgaggcg gggcaacatc cccgtgattt ccgcatccaa aaatttattc ttttcaccac
    19621 caccgttatc cgagtagtag attgccggca caccgtgtag gctaatggcg tggcgtagtg
    19681 catcagccac cgcaaaggcg ttctcactga gtgccagcga ccagcccacc acttttctac
    19741 cagcaccatc gacaatcatt gtcagctcag gggtaaacgg cttaccgtgt atcgggtggg
    19801 ctactttgag cttcagtgag tgaccgtcac caatccatac atcatttgct cgaagtaccg
    19861 accaatcccg cttcacatag ctcagtaact gcttgtaatg cgagccggtg cgtctgccgt
    19921 actctttcac atacaacggc aacttattca tcgctcgctg tacttggctt aggctggggc
    19981 attgtgccaa cagtagcggg ttgtctgcat actgatacgc ccattccacc tcaaattctc
    20041 ggtaggcttc ggtgaggcaa ataccgtttt tctgccgata tacgcctaaa aaagcactta
    20101 gccaccaaat ttcttccggc ttggtctcct gccgtacctg tggggcaagc agtttcaacc
    20161 gttgctcggc gttctctgcc ttgcagtaat ccaccaccca gccgtttaag gttcgcaccg
    20221 agagtgtgcg ttttgccgtc tttttagcat ttgctacggc aaccagctcc gccaagtgcg
    20281 gtggcatttc gccttgtttg gcaaggttgc aaaggtaggt tatcgcttta atccggctca
    20341 ttgagccttc caactccaac acatacgcca ccagtgccat tcgtgcatca gcaatttctc
    20401 gctgtttggt ggtcaggttt cccacatcca cctctgcacg cactaccggt aactttttcg
    20461 gcttggcttc caccaccgcc gacataaagc gggagcggat ttcggtttga acttcggtgg
    20521 gtaaagagtt aatgtgatat tcaaaaccac ctcctttaac ccctttcaat ggacgagttg
    20581 cccattgttc ttttttggct tgtctagtta catttgttgg gtattttgat aagccactaa
    20641 tacctgctaa ttcttttgca ctaaaccaat ctttcataac agctatcctt gttatgcaac
    20701 atcagggtaa cgactaggcc atatttcggc tggcgttttt cctaatgctt ttgcgataat
    20761 ttcttcaccg tttttataag gtttatcaag agcatttctt actgttgttt tggaaagccc
    20821 attctcaatc cctaactgag aaaatgttat tcctttcttc atcaattcag ctcgaatatc
    20881 agctctatgc atatcttgag ctcttttctt tttattcatt ttgtgagatc ctccacattt
    20941 agtttatttg ctacgcttta gcgtacttga ttaactacag gactaaatat aatacttatt
    21001 cttttctaaa tcaatagtga tttaataaat tttttaaatc ttttttaaat ctatttgtaa
    21061 gctattgatt ttaaataact taatcaattt tgattttaaa atcatttttg attaagaagg
    21121 ggttaattat gaaatcattt gataaagttt ggttttcagc caaagaacta gaagaattgg
    21181 atttgcctga ccttccaaag caagcaacaa acattacaag aaaggcatta aaagaactct
    21241 ggataaaacg tgatgcagtt ggagtaaaag gtggggggaa tgaatatcac ataacttcat
    21301 tgcctcgtaa agcccaagaa gcactcggat ttaaaagtgg aataaatgca atcaaggata
    21361 gcatagtaag agagattaca cctgaagagc aaaacaaagg atctgaatta tcaggcaccg
    21421 ttttgaataa cataatctca atgattgata gttttgcatc tattaaagta tctgcaggct
    21481 ttgggagctt taatgaaggt gtaacaaaac ctgatggaca agagccttat gctgatagct
    21541 tgttgcatac gcttggtgtt aatgccaaga agtgtgctgt tttttgggca agtggagact
    21601 cgatgtatcc gactattgat aatggcgacc agctactagt tgatttaagt cgtaatgaga
    21661 tacgaggcga caataatatt tacattgtac aaaacggcga cagtgtttgg gttaagcgtg
    21721 taaaactgct atgggacggt gtagagctta tttcagacaa ccgagaagag tacgagttaa
    21781 taaagattac agcagaccaa gcccaaaacc tacaaatcat cgggcaagtg gtacacatcg
    21841 ggcattcttt agtttaaaac agatttaaaa tagttttaaa accgatcaaa cctatgcaaa
    21901 aaataacgca aaaactgctc gtttttttct aatcctgctc attttgtttt ttgcatagct
    21961 ccaaccaaac aataacggcg aacccttgta ttcacggggc tcgccgttat ttttccgccc
    22021 aaattttttt ctttctctct atgcaaaaaa gatcagtacc ccacaataaa acagtaattc
    22081 aaacctccag aattagaaca aaagttttac cccacttatt ttaagtgggg ctttttttat
    22141 tttataactc atcaaaatat tcatctcccc aagtctcttc tgctagcttg agtaaatttg
    22201 caaaatcttg gaaagaaggt accgcttgtg tttcttctaa tttgacttgt gccgaaatta
    22261 atttttgtct aagcgactca taccattcca ataatgataa agataacggt gatcttgccc
    22321 gttttccaag ccaatataac ccttgaaacg gaatagaaat ggcgaaaaca gcagtaagta
    22381 ccgaattggc taaaatagat tgggtcggat cggtaaagca atattgccaa actaatgcaa
    22441 agcaagcaaa agcaggcatt actttagagg aaaattttac caagcgaata atgtggtaat
    22501 ctggcataaa attggctaat tttttctgat tcggcagagt gttgaggtaa cgctgtcctg
    22561 catcaaataa gcttaacata ggattatctc tttcaaattt ttcttttatt ttagctaact
    22621 gattaaaatc tacaataggt taatgcagtt tggctcaagc cttgctatac ttcacaacaa
    22681 aatatttaca atctattgaa gggtatttta tgtcaattaa atttgtcgat ttattgcagc
    22741 aaagttggaa ctttatgcgt aatcaacaag cattttcact gtttgccatt gtcaccattg
    22801 tggttgtgca gttggttttt attttagtgt cgccaaattc gcctgagcta atggcggagt
    22861 cgcaaccgca acaacttcaa attgatgcct ctaaaatggt gtctatacta ttgccaacta
    22921 ttttattagg tgttgtcaat cttttgatca atgtcttaat gattttcaat atccaatcga
    22981 ttaacgatgg caattatcgt caatttttcc aaaatgcagg aaacgcatta aagcacttcc
    23041 tacctgtgct gttgttacaa tttgtgatgg tgttaccgct ttctctcggt gcatcttttg
    23101 caatggcatc gcctgaaaca gtgattattg cattgccggt gttggtagtc ggtttttatt
    23161 tttttatcaa attatcgtta gtgatttatg cttatttatt ggagaaaccg cagaaaagtc
    23221 tatcggaaag tattaaattt acgcttcaat tatcacgtgg aaaaatgcta ccgctgattt
    23281 tattttgtgt gatttcttat ttattaccgg ggatgttatc tcgtttgttc acagtgtttg
    23341 gtaatgactt tattggcata ttcattacca ttgttttaag tgcggtaatt aacgtcttta
    23401 tggcgatttt cagcttccgc ttttaccaag tttaccgcca aatgccggca gtgcgttagg
    23461 agtatcaatg aaacagttac ttgaatttat tccgctgatt ctgttttttg tcgtgtataa
    23521 aatgagcggt attcagatgg cgtctatcgc attggttatc gctacaatcg tgcaaatgat
    23581 cgccttaaaa atgctctacg gcaaaattga aaaacagcaa attattatgg gtggctcggt
    23641 ggtctttttc ggcttactga gtgcctattt taatgaagtt aaatatttac aatggaaagt
    23701 aaccattgtt tacgctctgt ttgcattggt gctattagtg agccaatttg tgttcaaaac
    23761 accattaatc aaaaaattat taggcaaaga aattcagttg cctgaagcag tgtggaataa
    23821 aataaacttc ggttgggcag tattctttct gatttgtatg ctgctgaata tttatatcag
    23881 tcaatattta tcggaagaga tttgggttga tttcaaatcc tttggcatta ttggcttaac
    23941 cttagtcgca acggttatta ccggtttcgt cctttaccct tacttaaaag atgctgaaaa
    24001 gcaggaacaa aaaaatgaaa gataaaccct atggaaaagc cccggaaggg aaactgattt
    24061 taagaacttt ggcaatgccg tcagatacta acgccaatgg cgatattttc ggcggttgga
    24121 ttatgtcgca gatggattta ggcggtgcaa ttttagccaa agagttggca aaaggtagag
    24181 tcgttacggt aacggtagat aaaatgattt tccaccgccc gatttcagtc ggtgatgtgg
    24241 tctgctgcta cggcaagtta atgcacatag ggcgttcttc gatgcaagtg aaagtcgagg
    24301 tctttatcaa acaagtttat gagggcaatc gcgaacgtta tctcgtaacc gaagccttat
    24361 ttacctatgt agcgattgat aaagaaggca aaccgcgtgc tgtgccgaga gaaaataacc
    24421 ccgaattaga cgaagcatta tcgctaattg atttaacccc tgaaaaacaa ggagaatagt
    24481 atgtattatg ttatctttgc ccaagataat cccaatatgt tggaaaaacg tttagaagtt
    24541 cgcccggctc atttggctcg tttggaaaaa ttacaggcag aaggtcgatt attaatcgca
    24601 gggcctaacc cgactgaaga cggctcaagc gtaaccggtt caactgtaat tgcagagttc
    24661 aactcacttg aagaagctca acaatgggca agccaagatc cttatgtgga agccggtgtg
    24721 tatagcgatg tgattattaa accgtttaaa agagtgtttt aattttttct cccctcttta
    24781 gaaaagaggg gctgggggag atttgattac gatattaatg tttcgtatga gagtaaaatt
    24841 acctctgcca aatctcccct aagccctctt tgctaaagag gggaattgat cgagcgtaaa
    24901 attctatcta ttttcaattt tgagcctaaa tttatgctta ccaccctaat tcccttatcc
    24961 caactcaatt taccgcccaa tttgcaaaat tctgagcaaa ttcaaccgct tgtgacggcg
    25021 atttcgcttt ccaatttcgt gcatcaaacc ttgcaaaaac agccggattt actggcagaa
    25081 tggcttgcca agtttcctac gcctgatgat tgctgcaatt atactgagcg tttagcaaaa
    25141 atattagcaa gagtggaaaa tgaagaaatg ttggggaggg ttttgcggca atttcgccac
    25201 cgtgaattgg ctcgtctgag ctttattcag tcaaataaat tagcgacggt agaattggta
    25261 tttcagcatt tgtcggattt agccgagagc ctgattctag ccgctcgaga ttggttgttt
    25321 cagcgttgct gtgccgaata tggcacgcca aagaacactc ttggcgaaac acaagaactg
    25381 ctgattttag gtatgggcaa attgggcgga cgagagctta atttttcttc cgatattgac
    25441 ctgattttta cctaccccga tattggtgaa accgaaggtg gacgcaaatc gattgaaaac
    25501 agcaaatttt ttacccgaat ggggcagcgg ttaattaaag tattagatga gatcaccgct
    25561 gatggtttcg tgtatcgtac cgatatgcga cttcgcccct ttggtgatag cggagccttg
    25621 gtgctgagtt ttactgcaat ggaagattat taccaagagc aagggcgtga ttgggaacgt
    25681 tatgcgatga ttaaagcaaa aattttaggc gaggatagcc aaaatttaaa tcatcgctat
    25741 ttaaagcaaa tgctccgccc ttttgtttac cgccgttatc tggatttcag tgcaatccaa
    25801 tcgttgcgtg aaatgaaaga aaaaatcagc cgtgaagtgg ttcgccgtaa tttaaccgat
    25861 aatattaaat ttggtgccgg tgggattcgg gaagtggagt ttatcgccca aactttccaa
    25921 atgatccgtg gcgggcgaga taaaatttta caagaacgta gcctgttaaa agtgctacca
    25981 cgcttggcag aattaaattt attaacccaa acgcaggtgg aaacgctcca caatgcctat
    26041 attttttacc gtcaaattga aaatgtatta caagcgattg acgataaaca aactcaaacc
    26101 ctacccactg atgaagcctc gcaagcccgc cttgtatttg cttgccaaag ctattatcag
    26161 caagatctat atagcgaaaa aacgcattgg gtggagcatt cctttaacga ttggcaacaa
    26221 tttatggcag tattgagcca atatcaacaa gcagtacgcc agatttttaa tgaaattatc
    26281 ggtgaagagg aaacacaagc caactgcaat ccggttaatg aaaaattagc cgaatggaaa
    26341 gacattttgc actataacat tcgccttgaa gatttatccg cagtgctaaa aggttatcca
    26401 aaggttgcag aaaatgatta tacggagatt ttccgtcact tttctactac ctttcaagat
    26461 tgggtaaaac gcccgattgg ggtaagaggg cgagaggtgc tacgcaattt aatgcctaga
    26521 attgccgaca gcatttttaa aggtgaagat catttattgt tattgcctcg cgtgttgaat
    26581 attgtcgata aaatcaccac ccgaactacc tatttggaat taatgctcga aaaagagcag
    26641 attctgcctc aacttttagc attgtgtagt aagtcggtta tgattgcgga acagatagct
    26701 cgatatccaa tgctacttga tgagctgatg agccatagag gcttaaccga cgtgcaggct
    26761 tttgaaaaat atcaatctgc cttgcaggat tatttaatcc gcattcctga agaagatgaa
    26821 gaagcactga ttgatggctt acgtcagttc aaacaaaccc aaattttacg catcgccgct
    26881 gctgatattt taggcgtgct gctggtaatg aagatcagcg atcatcttac ttacttagca
    26941 gaagcgatta ttaatgcggt ggtaaatatg gcgtggaagc aagtcagcca acgctttggt
    27001 gtgccggaac atttagaggc tgatgaaaaa gggtttgcag ttattggcta cggcaagcta
    27061 ggcgggattg aactgggcta taattcagat ctcgacttgg ttttcttgca taatgcccca
    27121 gaggatagcc aaactgttgg cggtaaaaaa gagatttcaa gccatcaatt ttacttaaaa
    27181 ttggctcaaa aaattaactc gatttttaac cttaatacca gtgccggcgt actatatgaa
    27241 gtggatatgc gacttcgccc atcaggcgag gctgggcttt tagtcagcac tttcaatgcc
    27301 tacgagcatt atcaaaaaaa tgaagcgtgg acgtgggaaa gccaagccct cgtgcggaca
    27361 agatgtgtat ttggggcgga aaacctcaaa caagcctttg aaaaaatccg ccaaagcacg
    27421 cttgctcagc ctcgtgcaag cggtcaatta cgccaagaaa tttgcgaaat gcgacagaaa
    27481 atgtaccaac atttaagctc gcattcagcc gagcaatttc atattaaaca agatcaagga
    27541 ggtattaccg atattgaatt tatcgcccaa tatttggtat tagcccacag ccaccaacac
    27601 ccgaaaatgg cagtatggtc ggataatgtc cgaattttcg acagcgcagt agaatgcggt
    27661 attttaagtt ccgaacaaag cgaacagcta caacattgct acaccgcact gcgtaacaaa
    27721 atccaccacc taaacttatt acgcaaagac agcgtggtgg acgcaagtga atttaccacc
    27781 gagcgagcat ttgtgcggga aatgtggcag aggttattag cataaattta gggcgtacat
    27841 tgcacgccct aatatagatt acgccgtttc ggtgatagcg aactctccgg cgatctcttc
    27901 cgcttgttgc aacacaaact caatcgcttc cgcctgtaaa tcgggcgggt atttataggt
    27961 acgcagagca atgcggatta aggttcgcat tttggcacga accgagtctt tatattgcca
    28021 atctacggtg accgatttgc gtaatttatc ggtaatgtct ttggcaagtt tcatcaatac
    28081 ctcatcgccc atttcccgca ccgcactttc attacgtgcc aaagcatcat aaaacgccat
    28141 ttccgcaggg cttagtccca acgcttcccc tcgtttttgg cgggcttcaa actctttggc
    28201 gagggcgatc agctcttcta aaatttccaa tacgcttaaa ttgtggttgt ggtattggtt
    28261 catcgcctct ttgagtttct gttcaaatgc tttttttgtg gcaagattgg caccgctttg
    28321 ctctcgcagt tgtgaggcaa gataacgctc cattgctgat agccacaaat ctttggttgg
    28381 gctgtttttt actgtttcca aaaactcatc agaaagcagg ttgatgtttg ggcggtcttt
    28441 tttcagcaaa tcaaataaat ccaccacacc atccgactgt accgcacgat tcatcaaggc
    28501 ggtaagctgc aacaagcggt cattttcgct cgaagaattg cgaggagcgg tgctgttttt
    28561 gataatggtg gcacgcactg catcataaaa cgccagttcc tgtttatagg gttcaactgc
    28621 ttttaatgcc ccacacaaag cataaccttt tttcgccaag cgtaccgatt gcaaaaaggc
    28681 gtttttgcgt ggggttttgt ctttggcagt gttatcaggt ggctgaatgc ggtctagggc
    28741 aagaatatgg ttggctgatg tcaaaatcgc attgagcagt ttaggcggtt cgctgatttg
    28801 caacattttg gcaatatcaa ccgcttgtcc gtcaatcggt gtggcaaatt gcccacgaat
    28861 gaccgtgata tgttccacca ttttttccag caccgctgaa atgtcccgca ccggcttttc
    28921 tttaccgcct gcgttggtgt actgcttcat cgctttttcc agctcatcgg tcaagcccac
    28981 ataatccaca atcaagccgc cattttcacg gcttttgttg cgaaataccc gatttacccg
    29041 agcgattgcc tgcatcaggt tgtgtccgct cattggttta tcaatgtaca ttgtgttaca
    29101 gcagggcgca tcaaagcctg tcagccacat atcccgcaca atcacgatgt tgagcggatc
    29161 gtctgggtct ttaaagcgtt tttctaaggt tttcttatcc tgattgtgtt tttgccactc
    29221 ggcagggtcg ctggcattac ttgtcatcac aattttaatg ctgccttgaa gcacatcgtt
    29281 tgagtgccat tctggacgaa gtgcggtgat tttttcgtac aatttcacgc aaatggcacg
    29341 gctcatcacc acaaccatcg ccttgccgtc ttgctgtttg gtacgctcat cgtaatgggc
    29401 aataatatct tccgccattt tttgcaaacg gctatccacg ctgtgcagtt tttcacgcag
    29461 gcggaagtta tagctgtttt catcgtcatc aatcagttgt tgtgcctctt ccatcacttt
    29521 ggaaaactcg ccactttcgc ctaagctgat ttggcgtggc tcataaataa tcggcacggt
    29581 tgccccatct tccaccgcat cttcaaaatc ataaatcgag acatatttac cgaagacttc
    29641 ttgggtgtct ttgtcatcaa gttcaatcgg tgtgccagta aagccaataa aagaggcatt
    29701 cggcaatgca ctgcgtaaat gcttggcata accctcacga tactcgcctt tgtggttgat
    29761 tttttggcta aaaccatatt gtgagcggtg tgcttcatcg gtaatcacaa tgatgttttc
    29821 ccgctcgttt aatacagggt gggcaagctc accctccatt aagccgaatt tttgaatggt
    29881 ggtaaaaatc acaccgcctg ccgaacgact ggcaagggca gagcggagtt cgtctcgccc
    29941 atcggcttgg attggcgttt gtttgagcag tgcctcgcca ccgcaaaaag tggcgtaaag
    30001 ctgaccgtcc aaatcgttgc ggtcggttac caacaccaaa gttggatttt tcaggctgct
    30061 ttggcttaat actttacctg cataaaacag catcgaaagc gatttgcccg aaccttgcgt
    30121 atgccaaaac acgccgattt tgcggttgcc tgtggcggca agcaaggtgc aatccaccgc
    30181 ttcattcacg ccataaaact gatgatatgc tccgattttc ttaattaagc ggtttttgcc
    30241 gtcccgttca aacaccacaa aattctgcac ataatccaag agatttttgg gtgtcatcac
    30301 gccttgcagc agggcggtga gttcatcttc aaacacaatg cgtttgctct gatttttttc
    30361 atcaaccaca cgccaagggg taaaacggtc gaaatcagcg gtcagcgaac cgatgcgggc
    30421 gacaatgccg tctgaaatca cgagtgcctg attaaacaca aacaaatcag aaatttcatc
    30481 tttataggtt tgcagttggg caaacgcctt gccaatgtcg gcattttctt tgagcggatt
    30541 tttcagctca aacaccacca gcggcaagcc attaacaaag ccaatcaaat ccggaatgcg
    30601 tttgcctttt ttgccgctaa tatccagctg attgacaatg cgaaaatcgt tattttctgg
    30661 acgctgaaaa tcaatcagct gcaccacatc agacacctgc tcaccgtaca actgataagt
    30721 gattttgacc ccatttctta gccaatcata agcctgacga ttacgctccg ccaaatcgcc
    30781 actgtcggca cggcacacct gtgccaccac attttccacc tcacaagcgg gcaaattcgg
    30841 gttgaatttt gcaatcgctt gcgccaaaag cggctttaaa atcacctcag cggttcgctc
    30901 ccgccattcg tgttctaaac ctgccaaaat ttttttgccg taggtgtagt cccagcccaa
    30961 gctttgcaaa gttgcaatgg cggattgttc aatggtgttt tcgttgatgg taatcatcac
    31021 aactccatct ccccacttaa taatttaggt aataacttat ctctaatttt
//
LOCUS       DANLVT010000015        30661 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.015, whole genome shotgun sequence.
ACCESSION   DANLVT010000015 DANLVT010000000
VERSION     DANLVT010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 30661)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30661)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30661
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.015"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(119..1129)
                     /gene="iolG"
                     /locus_tag="PXC99_000611"
     CDS             complement(119..1129)
                     /gene="iolG"
                     /locus_tag="PXC99_000611"
                     /EC_number="1.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005537901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol 2-dehydrogenase"
                     /protein_id="HDL5417092.1"
                     /translation="MLKVGIIGAGRIGRVHSESISKYVKGAEIKAISDVKITEELTAW
                     AKSMGIPEVYDDYKKILQDPEIDAVLVCSSTNTHAPISIEAAQAGKHVFCEKPVDADP
                     AKIREVLSAVEKAGVKFQVGFNRRFDHNFKAIKDRVAAGDIGEPHVIRVTSRDPEAPP
                     IEYVKVSGGMFFDMTIHDFDMIRYLSGSEVEEVFAVGTVLVNPEIGKAGDIDTAVITL
                     KLKNGAIGVIDNSRKAAYGYDQRAEVFGSKGAIHITNDTGSTAVFSGENGVVAEKPKY
                     FFLERYMQSFADEISCFVDSVVNDKPTLVNGNDGLQPVLIALAAKKSLEENRPVKLSE
                     VA"
     gene            complement(1131..2027)
                     /gene="iolE"
                     /locus_tag="PXC99_000612"
     CDS             complement(1131..2027)
                     /gene="iolE"
                     /locus_tag="PXC99_000612"
                     /EC_number="4.2.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011817366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="myo-inosose-2 dehydratase"
                     /protein_id="HDL5417093.1"
                     /translation="MKAENIQLGIAPIGWTNDDLPELGAENTFEQCVSEMALAGYTGC
                     EVGNKYPRDVAVLKHKLDVRGIQICNAWFSTFFVDGKREETIAEFIKHRDFLHAMGAK
                     VIGCSEQSRSIQGTTKSVFKEKPIFNDEDWKRMAEGYNELAKLAAEKGMKVCLHHHMG
                     TGIQTPEEVDRYMAEVNDDVYLLFDSGHLYYSEGCQKAMLGVLEKYIDRIIHVHLKDV
                     RDEVMAEVKAKDLSFLEGVKKGTFTVPGDGVIDFRPIFDILEKHDYKGWMVVEAEQDP
                     ALANPFEYALKGRKYIRETAGV"
     gene            complement(2154..4088)
                     /gene="iolD"
                     /locus_tag="PXC99_000613"
     CDS             complement(2154..4088)
                     /gene="iolD"
                     /locus_tag="PXC99_000613"
                     /EC_number="3.7.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3D-(3,5/4)-trihydroxycyclohexane-1,2-dione
                     acylhydrolase (decyclizing)"
                     /protein_id="HDL5417094.1"
                     /translation="MQTTRLTVAQALVQFLDNQYLDVDGKEIKFVHGVAAIFGHGNVL
                     GIGQALAQNAGGLTLYQGRNEQGMAHLAMGFAKQNLRQRIIACTSSVGPGAANMVTAA
                     ATATANRIPLLLLPGDVFATRQPDPVLQQIEQPYDLSISTNDAFRAVSKYWDRVQRPE
                     QLMSACINAFRVLTDPAETGAVTIALPQDVQAESFDFPNSFLQKRVHRLERTPPTTAM
                     IKQAVTLIQTKKKPLIVCGGGVRYSQAGQILQKFAKQFGIPFAETQAGKSAVVSDHAL
                     NVGGVGETGCLAANRLAKEADLVIGIGTRYTDFTTSSKWIFQNPNVQFLNINVARFDA
                     YKLDGVQLVADAKTALEALSQAIPTDYQAQWENEISQAKADFADEIQRLRAVQYHPDF
                     TPEINDNLDHKAVHNEFIQLTGSQLTQTQVLGIVNETIDNNAIIVAAAGSLPGDLQRT
                     WLSKGEETYHLEYGYSCMGYEVSAAVGVKIARPEQEVYALLGDGSYLMAHTELVTSIQ
                     EGKKINVVLFDNMANGCINNLQIGNGMDSFGTEFRFRNGETNQLNGGLVPIDFAKNAE
                     AYGCKTYRVTNEAELRAALDDAKKQTVSTLIDIKVLPKTMAHGYGCWWHVGVAEVSES
                     ERIQQARQRSEEQLAKARKY"
     gene            4356..6272
                     /gene="iolC"
                     /locus_tag="PXC99_000614"
     CDS             4356..6272
                     /gene="iolC"
                     /locus_tag="PXC99_000614"
                     /EC_number="2.7.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-2-deoxygluconokinase"
                     /protein_id="HDL5417095.1"
                     /translation="MATVNHQDRPLDLICLGRVAVDFYGQQIGSRLEEMTTFSKYLGG
                     SSGNVAYGTAVQGLRSSMLARVGDEHMGRFLREELQSVGVDTSHLITDKERLTALVIL
                     GIKDKETFPLIFYRDNCADMAITKDDFSEAYIASSRCLAITGTHLSNPKTREAVLTAL
                     EYAGRNEVKRALDIDYRPVLWGLTSLGDGETRYIDSAEVTKSLQEVLHHFDLIVGTEE
                     EFHIAGGSTDTLTALKNVRKVSNAVLVCKRGALGCSVFEGELPNDLDGGLNVYGVRVE
                     VLNVLGAGDAFMSGLLRGYLNNEGWEQACHYANACGALVVSRHGCSPAMPTKRELDDY
                     LTRAESVPRPDLDERLNHLHRVTTRKKQWENLCIFAFDHRKQLVDMANKVGADLARIP
                     KLKQLLLKAMEQTATQSGLPQNQAGILADTTFGQDVLNEITGKDYWIARPIEEPSSRP
                     LELEYGDLGSQLASFPRDHVIKCLAFYHPNDESGLKARQDRKLKEVYQACCRTGHELL
                     LEIILPADMPQSEAFYNQAIAHFYQLGIKPEWWKLPDVSRAQWQAISATIEANDPDCR
                     GILILGLDAPLEVFKDTFEQAKGCEKVKGFAVGRTIFGEPSEKWLAGELDDNTLISAV
                     SEKYRTLIDLWQQR"
     gene            6561..7901
                     /locus_tag="PXC99_000615"
     CDS             6561..7901
                     /locus_tag="PXC99_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HDL5417096.1"
                     /translation="MSCNTSPKRFHASWESIKQHQVPEWYEDAKFGIFIHWGIYSVPA
                     FAPPTCQLGEIDIDEQWFCNNPYAEWYFNSINVKKGPTYEHHIKTYGESFAYNDFLPL
                     WKAEKWQPAEWAKLFAKAGAKYVVLTTKHHDGFCLYPSKYTDFNCMQAGPKRDLMGEL
                     TENVREQGLKMGAYYSGIIDWTYSSAPIFTESQNFSNACPTYEYADYAYKQVVELIDR
                     YKPDVLWNDIGWPKVGEHMLPHLFAHYYNSVQEGVVDDRWNKLWCDFTSKEYKHGVAS
                     RDKKWEMCRGMGLSFGYNQVEDESHLISVKDLISLLVETVADNGNLLLNIGPKADGTI
                     PQEQVERLLALGSWLEINGEGIYKSRCSQHQTEQIGDVTYRYTKVGADLYLYIDGLTE
                     AQISLPLSVYGELQALNTELKFTIENTAQGRVLHIQNYQPDWYVLGFKIADGEK"
     gene            7904..9244
                     /locus_tag="PXC99_000616"
     CDS             7904..9244
                     /locus_tag="PXC99_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HDL5417097.1"
                     /translation="MSVSQRFIDFMNAHVAPVARRMENQPHISAIRDGFIVVLPFLIV
                     GSFIMILLIPPFDENTQNAFGQAWWRFANWASPYGWNFFQMSFNAISLFTSASIAYNL
                     AKAYKREPLPAAFLSVMAFLLVAAPVKDGMMDIKFFGGIGLFSAIFIAIYSVEMTRLL
                     EFLKIKIRLPKEVPHAVAESLNIVIPILAILLTLYPFAIWVESATGRNIPQLIMDFMA
                     PLIAVSDSLGAICLFVIATHLLWFLGINGSLVLMQLWTPFLLQNMAANLAAFQAGEPL
                     PFIITNSFWDFYIVHGASGGVIALAFLLVRSKSAHLRSIGKIGLVPSFFSIGEPIVYG
                     VPMVVNPLFFIPLIFAPLANAVIAYLILDFNLIHRVYLMAPWTTPAPIGAYLVSAGDI
                     WAPILSIALIILDIVIYYPFFKMYEKVCVEKEKAQNLDEKAQQELLEKARMAAQ"
     gene            9382..10206
                     /locus_tag="PXC99_000617"
     CDS             9382..10206
                     /locus_tag="PXC99_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDL5417098.1"
                     /translation="MNGPTQLAHFQEQIRKEYDGLSKRLKQVAQYVLDNGNSVVFDTV
                     STIAERADVPPSTLIRFANAFGFSGFNEIKQLYRQDMMEGTSRYTERVQLFRQIEPLD
                     EQNSELNHILDVFVQGNTQALQQLSTQVSEEQLAQTVDILHNAKRIFIVGLKRSFSIA
                     NYLNYALHHLDYDVFMIDGSGGMFDEQLSRIREGDAVIAVSFSPYANETLNVVTATAR
                     PGVKHIAITDSQLSPLLSFSDVSFIIKEAQVSGFRSQCATMTLAQTIAVSLALKKA"
     gene            complement(10250..10492)
                     /locus_tag="PXC99_000618"
     CDS             complement(10250..10492)
                     /locus_tag="PXC99_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDL5417099.1"
                     /translation="MSDKSIILEIINALGNKENIKQVEACLTRLRVVLHNNGLLNKSA
                     LKKLGAVDVIKVGDTQQIIFGAKAGQYRDEINALIG"
     gene            10757..11005
                     /gene="rpsP"
                     /locus_tag="PXC99_000619"
     CDS             10757..11005
                     /gene="rpsP"
                     /locus_tag="PXC99_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HDL5417100.1"
                     /translation="MVTIRLTRGGAKKRPFYQIVVVDSRSPRDGRFIERIGFFNPLAA
                     GQAERLRLDVAKVDAWVAKGADLSDRVASLVKEARKAA"
     gene            11038..11565
                     /gene="rimM"
                     /locus_tag="PXC99_000620"
     CDS             11038..11565
                     /gene="rimM"
                     /locus_tag="PXC99_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005626427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HDL5417101.1"
                     /translation="MSEQKIEVVGKLGSTYGIRGWLRLYSSTEQTESIFDYQPWFLKI
                     KGQWQQVELESWRYHSNDLIVKLKGTEDREAAQLLTNAEIGVDLSVFPELEEGDYYWH
                     DLIGCSVVNLEGYTMGTVAEMMETGSNDVLVVRNNGKDAFGKQERLIPFLYEQVVKRV
                     DLATKTITVEWDAGF"
     gene            11610..12365
                     /gene="trmD"
                     /locus_tag="PXC99_000621"
     CDS             11610..12365
                     /gene="trmD"
                     /locus_tag="PXC99_000621"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HDL5417102.1"
                     /translation="MWIGIISLFPEMFKAITDFGVTGRAVKQNLLQVECWNPRDFTFD
                     KHKTVDDRPYGGGPGMLMMVQPLRDAIHAAKKAALAVEGGEAKVIYLSPQGRKLDQNG
                     VQTLASNQKLILICGRYEGVDERLIQTEVDEEWSIGDYVLTGGELPAMTLIDAVARFV
                     PGVLGKQASALEDSFAEGLLDCPHYTRPEVLDGMPVPEVLMSGHHEQIRKWRLEQSLE
                     RTWLRRPELLDSLALTDEQRVLLAKIKKQHKIS"
     gene            12392..12742
                     /gene="rplS"
                     /locus_tag="PXC99_000622"
     CDS             12392..12742
                     /gene="rplS"
                     /locus_tag="PXC99_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HDL5417103.1"
                     /translation="MSNIIKQLEQEQLKQDLPSFRPGDTLEVKVWVVEGSKKRLQAFE
                     GVVIAIRNRGLHSAFTLRKVSNGVGVERVFQTHSPVIDSISVKRKGAVRKAKLYYLRE
                     RSGKSARIKERLGD"
     gene            12898..13254
                     /locus_tag="PXC99_000623"
     CDS             12898..13254
                     /locus_tag="PXC99_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417104.1"
                     /translation="MKQLSIRLPDDEFTFIKTFASAHKLTLQNFVMSAIQAKVAEMSA
                     KNKISEESNIHQPLSKDEKIMLNEAKVFYSARSHLKAENVILPSDFMEQIKSGCGAEK
                     MAEMMGYTKEDWESMK"
     gene            13256..13579
                     /locus_tag="PXC99_000624"
     CDS             13256..13579
                     /locus_tag="PXC99_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417105.1"
                     /translation="MGQITFSNIFTKVIFENVLSASTKEKIKQMLFQSVVALPPLHSE
                     RKMILQLKKQKITIFYQVIEEQSVQILAYQFGGTDKLTGVSKAHFKTLDAIFQMTDEE
                     KEGKF"
     gene            complement(13589..13921)
                     /locus_tag="PXC99_000625"
     CDS             complement(13589..13921)
                     /locus_tag="PXC99_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like family protein"
                     /protein_id="HDL5417106.1"
                     /translation="MQIEQYQQWVRQFYQQQGWYERSPFMRVTYLAEEIGEVACAVRA
                     IEIGRERPDETEASQQQKRDNLIEELGDVMDNLFVLADKYGISMTEVLERHQAKFEKR
                     YLQKNMEK"
     gene            complement(14014..15210)
                     /locus_tag="PXC99_000626"
     CDS             complement(14014..15210)
                     /locus_tag="PXC99_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HDL5417107.1"
                     /translation="MNIPFCLPENISPETFLREYWQKRPLLIRNGLPQIVGLFEPEDI
                     LELALEEEVTARLIQCENEKWSVKSSPLVEEDLEELPVQWSVMVQNLEQWSPELGELW
                     QAFGFIPQWQRDDIMVSCSPLNGTVGKHYDEYDVFLVQGYGQRRWQLGKWCDPSTEFK
                     PNQPIRIFDDMGELVMDEVMNPGDVLYVPSRMAHYGVSESEQGLTFSFGLRYPNATDL
                     LENLCKTIEQQADNINSSEFHLPFRLTPNEQPNALLDPKMVKMFKHQLIDLLQNSEQF
                     DELLTHSVATAASSRRYELLQTDNEYYPDEVQEILEAGGWLQQDANVKILYTENPQRV
                     YVNGEWIDELNEAEMALLIRIANGDSISWNKLASKVQDQAELELMLDTICDWLDSGWI
                     ILSEAE"
     gene            complement(15359..16702)
                     /gene="accC"
                     /locus_tag="PXC99_000627"
     CDS             complement(15359..16702)
                     /gene="accC"
                     /locus_tag="PXC99_000627"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HDL5417108.1"
                     /translation="MLEKVVIANRGEIALRILRACKELGIKTVAVHSTADRELKHVKL
                     ADETICIGPAPSVKSYLNIPMIIAAAEVTNADAIHPGYGFLSENANFAEQVEKSGFIF
                     IGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDGPVGNDPKKNKEIAKRIGYPVIIKA
                     SGGGGGRGMRVVHHEKDLEESIAMTKAEAKAAFNNDMVYMEKYLENPRHIEIQVLADT
                     HGNAVYLAERDCSMQRRHQKVVEEAPAQGITPELRQFIGERCANACREIGYRGAGTFE
                     FLYENGEFYFIEMNTRLQVEHPVTEMITGVDLVKEQLRVAAGLPLSITQDDIKVKGHA
                     IECRINAEDPNTFLPSPGKITRLHVPGGLGVRWDSHIYSGYSVPPHYDSMIGKLITFA
                     ENRDIAIRRMENALSETIVEGIKTNIPLHTQILADKEFRKGGTNIHYLEKKLGLK"
     gene            complement(16774..17241)
                     /locus_tag="PXC99_000628"
     CDS             complement(16774..17241)
                     /locus_tag="PXC99_000628"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HDL5417109.1"
                     /translation="MDIRKIKKLIELVEESGITELEVSEEEGTVRISRAAPAVAPAAV
                     QYAAAPVVAPAAPQVASTVPVAAPAEAPKAAETSGHAVLSPMVGTFYRSPSPDAKPFV
                     EVGQTVKIGDTLCIVEAMKMMNRVESDKAGVVKEILVNDGEPVEFDQKLFIIE"
     gene            complement(17494..18276)
                     /locus_tag="PXC99_000629"
     CDS             complement(17494..18276)
                     /locus_tag="PXC99_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HDL5417110.1"
                     /translation="MAVKNEQFIVICNGVFRLFGNIVKILSYPFHALFPKKRFTIPEY
                     SPAKIQSSIPSKITKTIWQTNYSNKVTLPMYANYLFNRLMSLSYDYRYVSTEEREAYI
                     KANADERTFNAYSKLTDGAAQADFWRIFTLLREGGIYIDIDGHLVYPLSKIIGENDSE
                     VLIKRRDKYTNFFLASEAGNWILKDTLELIISNIENRRIEGGVFVMTGPDTLNNAIGD
                     KEVNFRRDKVTCAQGTFTNEYFQYIDKPGSKWNYKKNEDLLK"
     gene            complement(18286..18723)
                     /gene="aroQ"
                     /locus_tag="PXC99_000630"
     CDS             complement(18286..18723)
                     /gene="aroQ"
                     /locus_tag="PXC99_000630"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HDL5417111.1"
                     /translation="MKKILLLNGPNLNMLGKREPQIYGSQTLADIENHLKKLAAAQDV
                     ELESFQANGEEPIINRIHQAFQHTDFIIINPGAFTHTSVAIRDALLSVSIPFVEVHLS
                     NVHSREPFRHHSYLSDIAKGVICGLGAKGYEYALDFAISHLKA"
     gene            complement(18809..19177)
                     /locus_tag="PXC99_000631"
     CDS             complement(18809..19177)
                     /locus_tag="PXC99_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL5417112.1"
                     /translation="MAFTIRKMVEQDTHQVFPLMQKLAVFEHYIDSFAITPEVVMESG
                     FRKSPPDFYCLVAENASNIIGILVYYFLPYTAQNRPAIYMKELYVDETARNQKVGEAL
                     MQALKNEAKAHHCKTIKSLE"
     gene            complement(19237..20061)
                     /gene="dapD"
                     /locus_tag="PXC99_000632"
     CDS             complement(19237..20061)
                     /gene="dapD"
                     /locus_tag="PXC99_000632"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HDL5417113.1"
                     /translation="MSLQAIIEAAFERRAEITPKTVDAETKAAVEEVIAGLDNGSLRV
                     AEKKDGEWVVNQWVKKAVLLSFRIADNEIIDGAETKFYDKVPTKYGNYTEEQFKADGI
                     RAVPGAVVRKGSHIEKNVVLMPSFVNIGAYVGEGTMVDTWVTVGSCAQIGKNVHLSGG
                     VGIGGVLEPLQANPTIIGDNCFIGARSEIVEGVIVEDNCVISMGVFIGQSTKIYDRET
                     GEVHYGRVPAGSVVVSGSLPSKDGSHNLYCAVIVKKVDEKTLSKVGLNDLLRSIDE"
     gene            20209..20871
                     /locus_tag="PXC99_000633"
     CDS             20209..20871
                     /locus_tag="PXC99_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HDL5417114.1"
                     /translation="MENFANLLTGKTREHLVPLPNALSDKHYLQPQVVEAFLTLQHAA
                     KQAGFNLQPASTFRDFERQKGIWNAKFRGERKVHDDNGVAIDMAALSDLEKCKAMLRW
                     SAVPGASRHHWGTEIDIFDPDLLPENTPLLLEPWEYLEGGYFADLTKWLHVNAETFGF
                     YFPFDGKHSRVGFEPWHISYRPISNEYEQRFNDEILKAAWQDEEVAGKECLLEHFEEL
                     LK"
     gene            20868..21620
                     /locus_tag="PXC99_000634"
     CDS             20868..21620
                     /locus_tag="PXC99_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5417115.1"
                     /translation="MIQLINETQQHDKFRQICDKWQLVEDKSSPLALVLTEERLELRK
                     LDEPKLGAIAVNFVDGTMAHRRKFGGGRGEAVAKAVGIKGDYLPTVIDATAGLGRDAF
                     VLAAVGCKVLLVERNPIVAALLEDGLNRAYQDVEIGSFMQERMILADVRDISQLDPQS
                     QMAEVVYLDPMYPHKQKSALVKKEMRVFQHLVGADLDSDSFFLPAKGLAKKRVVVKRP
                     DYAPFLAEQKPDFSHTTKNHRFDVYLSHLKND"
     gene            21711..22547
                     /gene="ftsN"
                     /locus_tag="PXC99_000635"
     CDS             21711..22547
                     /gene="ftsN"
                     /locus_tag="PXC99_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HDL5417116.1"
                     /translation="MPQRDYVARSNEKKSKKNQKESNVKKILMRIIGVILFFGIGLWF
                     LKSSAPVPTVPSAPQPANSQTKSELPSRPEETWSYIRDLETRTVITDNSQTSQERLAQ
                     LTAEQKQQIEERRKQEEARLAAEQAQQKPATDVSATELAPKTEEVKSLTEEELAAKKA
                     QEQALAQKQAEEKRRQAELKKQQEAKKEQPAKIVASAATLADKAANQAGKFGLQCGAF
                     KNKAQAENMQARLAMAGFNARIASSADWNRVFVGPIGDRAATSRAQSNARSVAECVIV
                     AM"
     gene            complement(22589..23770)
                     /locus_tag="PXC99_000636"
     CDS             complement(22589..23770)
                     /locus_tag="PXC99_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HDL5417117.1"
                     /translation="MKTELDMIVIGGGMIGAATALGLAKQGLRLALLEKNPLPTFNPD
                     SDYDLRISAISMGSIQLLEKLGVWEQIVAMRSTPYTQLETWEIDGFNTLFSAADLGLE
                     KLGDMVENNVIQIALWEQLKQYPNCLQAVGFEQIFANKAGEYWEVTVDGNTFAAPLLI
                     AADGANSQVRQWAGIGLTAWQYRQHCLLATVTTEKPAPSGTWQQFYPTGPRAFLPLSG
                     NHGCVVWYDSPQKIAELKMLPAEKLGVAIEQHFPSRLNAELGNIQVQASGAFPLTRQH
                     AQHYVQNGVVLVGDAAHTINPLAGQGVNLGFKDVKTLLEVIEQAVKKGKNFASEQVLQ
                     RYEQKRKPDNLLMQTGMDVFYKAFKTDLLPLKIARNVGLVLADKVSPIKKQALKYAIG
                     I"
     gene            23877..24215
                     /locus_tag="PXC99_000637"
     CDS             23877..24215
                     /locus_tag="PXC99_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417118.1"
                     /translation="MSCKTHANHEHEHGEGCGHTAIKHNDHIDYLHDGHLHHNKHGDH
                     YDEHVLEVNETNPADCNAAHCCGDHVHGEVCGHEAVPHGDHIDYIVNGRLHHQHGDHC
                     DDHGPVEIVK"
     gene            24347..25216
                     /locus_tag="PXC99_000638"
     CDS             24347..25216
                     /locus_tag="PXC99_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HDL5417119.1"
                     /translation="MTLAIVYSRASIGVEAPLVTIEVHISNGQPKLTIVGLPEATVKE
                     AGDRVRSALLNANFIYPPQRITINLAPADLPKEGGRFDLPIAIGILAASGQIDSDLLT
                     QFEFLGELALTGHLRGVHGTIPAVISADKAKRQMILAKQNANEASLVSNATTYFAGSL
                     LEVVNMLNKRDKLPICQHISQHSAEIRPLVSRDLTDIIGQQHAKRALMIAAAGQHNLL
                     FLGPPGTGKTMLASRLADLLPEMTDEEAIETASVTSLVQNELNFQNWKQRPFRSPHHS
                     ASMVALVGGGCEN"
     gene            25308..27119
                     /locus_tag="PXC99_000639"
     CDS             25308..27119
                     /locus_tag="PXC99_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417120.1"
                     /translation="MFYLNNDNFKREPYRGYCPSHLEKLFTKPHLDIRGNGYYYPDNE
                     YVVAWYESDFIFKSRKAQAHAKVKLVNLTCPKYTGKNSAEYLSVLYISVPLNYLHYFT
                     IGSIWKGGVAKEQFALEEFYITVEAENQDGKRENLSIVSFGESEENGLEKPFDYTIYT
                     IPTEYHNYGDDLNRLLSISYQNQKFIIHPLHIFMMHYGYSTDIKRILATYPLDEVRER
                     LFIDKVVENFDVERYVVLPKYFVKKDAIFLYHFKYDEETTGTRVKKLVSQFRLNIHNQ
                     THPIEIDFWHTQKVELKIRGVRLGNAVLCAEIIGLNQPEGEDITLVLSQSKREKSGNK
                     TEEQNNEVNNVPITRVYTREPELDELPLTDNSPDNRTVEYNKRQFELLGRQRQIRALK
                     KAREESNQKMKALTPDEIDSLGVGESDGRNGKVGLAFCFLDDTPVGKSSKLYKLWQHA
                     KAVAEWNHGEAHWYTPNLGFRNDDELLPVSLETNKCFDYPEIAIIIRLQIYGETFFLI
                     DFSMKQRDISIRGLGYKPDPNEDFLYESDMSKSELSELLSAVHHHEHLPKEYIEKKNK
                     EKTKLTTFNHSEAESSNWAYNAVQKLTSRAITKPTYF"
     gene            27128..29908
                     /locus_tag="PXC99_000640"
     CDS             27128..29908
                     /locus_tag="PXC99_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HDL5417121.1"
                     /translation="MNAEQRVIVTPTFWGKFFGKIKSVELQQNKVIVTDKKNNITEHD
                     LGKTFDFPAIQKSFFGTKLFFKDDSTEVVLSKLAKKQTDSLLLEIEKVVASNIKVKVK
                     EGFQHFANLAENQYLRDSDIPTLNDRVRLSVLSYGDNKEHFQKYFDESLVKKIQYISS
                     LFPVNAINAQTIRREYEQHVLNHRKHFFDVIESNPLTEQQRLSVIRNNDINMVLAAAG
                     TGKTSVMVAKALDLIDSGACKSEDILILAYNRDAATELSERLQERAREANLDLENSPS
                     ISTFHALGRRIIKECGKSVHLSKFAEDPMKLDRWFNKWLEDYIKEDPDNLAKFIQLAY
                     QPIDPFQFKTKDEYDRYVNDNDYRTLQGERVRGYQELLIANWLFSHSVEYEYEPRYVS
                     KRRIEIGFDYKPDFSLGDGVYLEHFGIDRQGRTRADINAQEYNANIQRKRELHAEHNT
                     TLLETYHYNWVENTLYKRLEQLMNEQFIPLKPKSQQEILDALNESGIFKENKNRYLKC
                     LQAIRTERLDYQQILKRLTDAKIVYAKEYATLLMRIHDAYVKELRSANEIDFDDMILL
                     ATQLVKTGEFKPKWKHILVDEFQDISMARLELLKEIYTKGPRPIWTVVGDDWQSIYRF
                     SGGKLEVTTRFNDMVGSHTLSKLEKTYRYNNSIADTAGQFIMQNPEQYQKNVVTHTKV
                     ADSCVHLYDSHVVKDEKSEANISLKASAILKLIRQKAPEATVAILARYRYLLEDAKSV
                     IKDKNVKFWTFHGSKGLEADYCILLGFFQGKVGFPNQNKEEAVVEALLPMLDSFPHSE
                     ERRLFYVALTRAKKESYLIADANAPSEFINELLSPKYKIDIVSKRFQERYRTIFKCNE
                     CSTGYFVMKQGKFGQFYSCTSGEVCRSSPRICEKCGRPMKLREGKFGQFWGCSGYGIK
                     GDQCTNTRKYFM"
     gene            29930..>30661
                     /locus_tag="PXC99_000641"
     CDS             29930..>30661
                     /locus_tag="PXC99_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL5417122.1"
                     /translation="MDLFESKKQLIELIKKYDSDKEIYSSSSYNESQLRTDFLDPFFG
                     LLGWDITNSKNKLTSEREVIVEEPLKEKVSENVKKPDYTFRFNSQRKFFVEAKKPSVK
                     IKTDPLPAHQVRRYGFTAKLSISVLSNFEYLAIYDCSEIVDVQQDALYARVRLYHYTE
                     YVKFFDEIMNLLGRESVYSGHFDNEWREISQKIENSKQTVDELFFEQINKWRHVLGSE
                     LLKINPCISNNELNDAVQDYINSIIF"
BASE COUNT         8936 a         6385 c         6571 g         8769 t
ORIGIN      
        1 ctcaaacggt cagttttaca aatttttctg caaaatgctt gcgtttgaac atcggctatg
       61 ccgatggcac gaagtgcgag tgtagcgagt aaaaccgacc gcttgtattt atgatcaatt
      121 acgccacttc actcaatttc actggtcggt tttcttccag tgattttttc gcagctaagg
      181 caataagtac cggttgtaag ccgtcattgc cgtttactaa cgttggtttg tcgtttacca
      241 cagaatctac gaaacagctg atttcatcgg cgaaagattg catataacgt tctaagaaga
      301 agtattttgg tttttccgcc accacgccgt tttcacctga gaatacggca gttgagccgg
      361 tatcattagt gatatggatt gcccctttcg agccgaacac ttccgcacgt tggtcgtagc
      421 cgtaggcagc tttgcgactg ttgtcgatta cgccgattgc tccgtttttc agtttcaacg
      481 tgataacggc agtatcaata tcgcccgctt tgccgatttc agggtttact aatacggtgc
      541 cgactgcaaa cacttcttcc acttcgctgc cggataaata acgaatcata tcgaagtcgt
      601 gaatggtcat atcaaagaac attccgccgg agactttcac atattcgatt ggcggggctt
      661 ccggatcacg agaggttact cggataacgt gcggttcgcc gatgtcgcct gccgccacac
      721 ggtctttaat cgccttgaag ttgtggtcga agcggcggtt aaagcccact tggaatttta
      781 caccggcttt ttcgactgca ctcaatactt cacggatttt agctgggtct gcatctaccg
      841 gtttttcaca gaaaacgtgt ttgccagcct gtgctgcctc aatcgaaatc ggagcgtgag
      901 tgttggtgga agagcagacc aatacagcat caatttccgg atcttgcagg atttttttat
      961 agtcatcata aacttccgga atacccatcg attttgccca agcggtcaat tcttcggtaa
     1021 tttttacatc agagattgct ttgatttcag cacctttgac atatttgcta atactttcag
     1081 aatgcacacg tccaatacgg cctgcaccaa taatacctac ttttaacata ttaaactcct
     1141 gcggtttcac ggatatattt tctgcctttg agggcgtatt caaacgggtt ggcaagtgcc
     1201 ggatcttgtt cggcttctac aaccatccag cctttgtagt cgtgtttttc taaaatatcg
     1261 aaaatcggac ggaaatcaat gacaccatcg cccggtacag taaaggtgcc ttttttcacg
     1321 ccttctaaaa agcttaaatc ttttgctttt acttccgcca tgacttcatc acgcacatct
     1381 tttaagtgaa cgtggataat acggtcgata tatttttcca gtacgccgag catcgctttt
     1441 tggcagcctt cggaatagta caaatgccct gaatcgaaca acagatagac atcgtcattc
     1501 acttctgcca tatagcgatc gacctcttcg ggtgtttgaa taccggttcc catatggtga
     1561 tgcaggcaga ctttcattcc tttttcggcg gcaagtttcg ccaattcgtt atagccttct
     1621 gccatacgtt tccaatcttc atcgttgaaa atcggttttt ctttgaacac agatttggtt
     1681 gtgccttgaa tactacggct ctgttcggaa cagccgatca cttttgcccc cattgcatgc
     1741 aagaaatcac gatgtttgat gaactcggca atggtctctt cccgtttacc gtccacaaag
     1801 aaggtgctga accacgcatt acagatttga atgccacgca cgtccagttt gtgttttaac
     1861 acggcaacat cacgcggata tttattaccc acttcacagc ccgtgtagcc ggcaagtgcc
     1921 atctcactca cacactgctc gaaagtgttt tccgctccca gttccggcag gtcatcgttc
     1981 gtccaaccga ttggggcaat gcctaattga atgttttcag ctttcataga gaaacctcgt
     2041 ttgatttata gagataaatt tggatgcaag cggttatttt tatcaaaaat tttgcaaatt
     2101 tgaccgcttg atattctccc ctcgtagctc aaagtgggga gttgtttttt taactaatac
     2161 ttccgagcct tagctaactg ctcttcggag cgttggcggg cttgttgaat acgctcgctc
     2221 tctgacactt ccgcgacacc aacgtgccac cagcagccat agccgtgagc cattgttttc
     2281 ggcaacactt taatatcgat taaggtagaa acggtctgtt ttttcgcatc atcaagggcg
     2341 gcacgcaatt cggcttcgtt agttacccga taggttttgc agccgtatgc ttcggcgttt
     2401 ttggcaaaat caatcggcac taaaccgccg ttgagttggt tagtttcgcc attgcggaag
     2461 cggaattccg taccgaaact gtccataccg ttgccgattt gcaggttgtt gatacagccg
     2521 tttgccatat tgtcgaacag caccacgttg atttttttgc cctcttgaat tgaggtcact
     2581 aattcggtgt gtgccattaa gtaagagccg tcccccagca aggcatagac ctcttgttcg
     2641 gggcgggcaa ttttcacgcc gactgccgca ctcacttcat agcccataca ggagtagcca
     2701 tattcaaggt ggtaagtctc ttcaccttta cttaaccaag tgcgttgtaa atcacccggc
     2761 aaacttccgg cggcggcaac aataatcgca ttgttatcaa tggtttcatt cacaataccc
     2821 agcacttggg tttgggtgag ctgggaaccg gtgagctgaa taaattcatt gtgaaccgct
     2881 ttatgatcaa gattatcgtt aatttcaggg gtgaaatcag ggtgatattg cacagcgcgc
     2941 aggcgttgaa tttcatcagc aaaatccgct ttcgcctgtg aaatttcatt ctcccattga
     3001 gcttgataat cagtaggaat ggcttggctt aacgcctcta atgcagtttt tgcatcggca
     3061 accagttgca cgccgtctaa tttgtacgca tcaaaacgtg ccacattaat gttcaaaaac
     3121 tgcacgtttg ggttttggaa aatccatttg gaagaagtcg tgaagtcggt gtagcgtgta
     3181 ccaatgccaa tcactaaatc cgcttctttt gccagacggt ttgccgctaa acaaccggtt
     3241 tctcccactc cgcctacatt caatgcgtga tcggacacca ccgcactttt acccgcttgg
     3301 gtttcagcaa atggaatgcc gaactgttta gcaaattttt gcagaatttg acccgcttgc
     3361 gagtagcgaa caccgccacc gcagacaatc agcggttttt tcttggtttg aattaatgtt
     3421 accgcttgct taatcatcgc tgttgtcggc ggtgtacgct ctaagcgatg cactcgtttt
     3481 tgcaggaagc tgttcgggaa atcaaaactc tccgcttgta catcttgcgg cagagcaatg
     3541 gtgacagcac cggtttcagc agggtcggtc agcacacgaa acgcattgat acaagcactc
     3601 attaactgct cagggcgttg cactctatcc caatatttac tgacggcacg gaacgcatcg
     3661 ttagtgctaa tgcttaaatc gtaaggttgt tcgatttgtt gcagtaccgg atccggctgg
     3721 cgggtcgcaa acacatcgcc cggtaataaa agaagaggaa tacggttcgc tgttgccgtt
     3781 gccgcagccg taaccatatt tgccgccccc ggcccgaccg aggaagtaca ggcaataatt
     3841 ctttgacgca gattttgctt agcaaagccc atcgccaaat gtgccatacc ttgctcattt
     3901 ctgccttggt agagcgttaa accaccggca ttttgagcaa gcgcctgacc tattcccagc
     3961 acattgccgt ggccgaaaat agcggcaaca ccgtgaacga atttaatctc tttgccgtcc
     4021 acgtctaaat attgattatc caaaaattgc actaacgcct gtgcaaccgt taaacgagta
     4081 gtctgcataa agcctcctct ggcttacatc gcttttgcaa gcggtcggtt ttctactgat
     4141 ttttacaaat gaaaaattta tttcatttat aatagcaagg aaatcgaaaa aaagatgtga
     4201 tccagttctc atttctgcga agttattgcc ttatttttca aagtgagagc tagatcacag
     4261 aaatgataat ttaaatagaa taaatttgaa ataaaaattt catttttgta tgatgtatag
     4321 tgtgtattca aatttacttg ttgtaaggag cggttatggc aacagttaat catcaagatc
     4381 gtccattgga tcttatctgt ttagggcgtg tggcggtgga cttttatggg caacaaatcg
     4441 gttcccgttt ggaagagatg accacatttt caaaatacct cggcggctcg tcaggcaatg
     4501 tggcttacgg tacggcggtg caaggtttac gttcttcaat gctggcaagg gtcggtgacg
     4561 aacatatggg gcgttttcta cgtgaagagc tacaaagcgt aggcgtggac accagccatt
     4621 taattaccga taaagaacgc ttaactgcac tggttattct cggcattaaa gataaagaga
     4681 cttttccgct gattttctat cgtgataact gtgcggatat ggcaatcacc aaagacgatt
     4741 ttagcgaagc ctatattgct tccagccgtt gcttagcaat taccggcacg cacctgtcaa
     4801 accctaaaac ccgtgaagct gtgctgaccg cactcgaata tgcgggtaga aatgaggtaa
     4861 aacgagcgtt agatattgat tatcgccctg tgttatgggg attaacctca ctcggtgatg
     4921 gcgaaacccg ttatatagac agtgccgaag tcaccaaatc gctacaagaa gtattgcacc
     4981 atttcgatct gattgtcggc acagaggaag aatttcatat cgcaggcggt tcgaccgata
     5041 ctctcactgc actcaaaaat gtgcgtaaag tctctaatgc cgtattagtg tgcaaacgtg
     5101 gggcattagg gtgttcagta tttgaaggcg agctgccgaa tgatttagac ggtggcttga
     5161 atgtgtacgg cgtgcgtgta gaagtgctga atgtgctggg tgcaggcgat gcttttatgt
     5221 cgggcttact gcgtggctac ttaaataacg aaggttggga acaagcgtgc cactatgcca
     5281 atgcgtgcgg agcgttagtg gtatctcgtc acggctgttc accggcaatg ccgaccaaac
     5341 gtgaacttga cgattattta acccgtgcag agagtgtacc acgtccggat ttagatgagc
     5401 gtttaaacca cttacaccgt gtcaccaccc gcaaaaaaca gtgggaaaat ctctgtattt
     5461 ttgcttttga tcaccgcaaa cagttggtgg atatggcaaa taaagtcggt gcagatcttg
     5521 ctcgcatacc gaaactgaaa cagctgctat taaaagcgat ggaacaaacc gcaactcaat
     5581 ccggcttacc acaaaatcaa gcagggatcc tagccgatac cactttcggg caagatgtac
     5641 ttaatgagat taccggcaaa gattactgga ttgcccgccc gattgaagag ccgtcttccc
     5701 gcccgctgga attagagtat ggagatttag gctctcagct agcatcattc ccacgcgatc
     5761 acgtcatcaa atgcttggca ttttaccacc cgaatgatga aagcggttta aaagcccgcc
     5821 aagatcgcaa gttaaaagag gtgtatcaag cctgttgccg taccggtcac gagctattgt
     5881 tggaaattat tctgcctgct gatatgccac agagtgaggc tttctataac caagcgatag
     5941 cacatttcta ccaacttggc attaagccgg aatggtggaa attgccggat gtttctcgcg
     6001 cacaatggca agcgatttcc gccaccattg aggcaaacga tccggactgt cgtggtattt
     6061 taattttagg tttagatgcc ccgttagagg tgtttaaaga cacctttgaa caggcaaaag
     6121 gctgtgagaa agtgaaaggc tttgcagtcg gccgcaccat tttcggtgaa ccgtccgaaa
     6181 aatggcttgc cggtgaattg gacgacaata ccttgatttc tgcggtatcg gagaaatatc
     6241 gcactttaat cgatctctgg caacaacgtt aatcatattg ctttaagtga aaacccctta
     6301 gcttatgata ttaagcaagg ggttttgttt tgcaaaaaat ccggctaaac agaccgcttg
     6361 ctagccgtaa aaatgcccga attttcctaa aaaagcgaat atcgggcatt cctcaatctg
     6421 cttatcacaa aataagtgtg atgaagttca catttcatac ataaaccccc ccctttttat
     6481 cgaaacaaat tgttttattt ttatcaaaat ggaaaatgta tttcagttta gttctattta
     6541 gattcaatag gagtctgtgt atgagttgca acacttcacc aaaacgtttc cacgccagtt
     6601 gggagtcgat caaacagcac caagtaccag agtggtatga agatgctaag tttgggattt
     6661 ttattcactg ggggatttac tccgtacccg cctttgcccc accgacctgt cagttaggtg
     6721 aaattgatat tgatgaacag tggttctgta ataaccctta tgcagaatgg tattttaatt
     6781 ccatcaatgt caaaaaaggc ccgacctacg aacatcatat caaaacttat ggcgaatcct
     6841 ttgcctataa cgacttcctg ccactatgga aagcggaaaa atggcaacca gcagaatggg
     6901 cgaaactgtt tgccaaagct ggcgccaaat atgtggtatt aaccaccaaa catcacgatg
     6961 gtttctgtct ctatccaagt aaatataccg atttcaactg tatgcaagcc ggaccgaagc
     7021 gggatttaat gggcgagctg actgaaaatg tgcgggagca aggcttaaaa atgggcgctt
     7081 actactcggg cattatcgat tggacttatt cctctgcccc gattttcacc gaaagtcaaa
     7141 acttctcaaa cgcttgcccg acttacgaat acgctgacta cgcctataaa caagtggtag
     7201 agctgatcga ccgctataaa ccagatgtat tgtggaatga tattggctgg ccaaaagtgg
     7261 gcgagcatat gttaccacac ctatttgctc attattacaa cagcgttcaa gagggcgtag
     7321 tggacgaccg ctggaacaaa ctatggtgcg atttcacctc caaagaatac aaacacggcg
     7381 tggcttcccg tgataagaaa tgggaaatgt gccgtggtat gggcttatcg ttcggctata
     7441 accaggtaga agacgaaagc catttgattt cggtgaaaga cttgatttcc ctattggtag
     7501 aaaccgtagc cgacaacggc aatttattgc tgaatatcgg cccgaaagca gatggcacta
     7561 ttccgcaaga gcaagttgaa cgcttattag cactggggag ctggctggaa ataaatggag
     7621 agggaatcta taaatcccgt tgtagccaac accaaaccga gcaaatcggt gatgtaacct
     7681 atcgttatac caaagttggg gcggatctct atctttacat tgatggctta accgaagccc
     7741 aaatcagctt gccactgtca gtttatggtg agctacaagc actcaatacc gagctgaaat
     7801 ttaccattga aaacaccgca caaggcagag tgttacatat tcaaaactac cagccggatt
     7861 ggtatgtatt aggctttaaa attgcagatg gggagaaata ggtatgtccg tttcacaacg
     7921 ttttattgac tttatgaatg cccacgttgc tccagtagca cgtcgaatgg aaaatcaacc
     7981 gcatatttcc gctattcgag acggttttat tgtagtgtta ccattcttaa ttgtcggcag
     8041 ctttattatg attttgctaa ttccgccatt tgatgaaaat acccaaaatg ctttcgggca
     8101 agcttggtgg cgttttgcga attgggcaag cccttacggt tggaatttct tccaaatgtc
     8161 gtttaatgcg atttcattat ttacctctgc cagtatcgcc tacaaccttg ccaaagccta
     8221 taaaagagag cccctgccag cggcatttct ctcggtaatg gcatttttgt tagtggctgc
     8281 accggtcaaa gacggaatga tggatattaa attctttggc ggtattgggc tattctctgc
     8341 gatttttatt gccatttatt cggtagaaat gacccgcttg ttggagttct taaaaattaa
     8401 aatccgctta ccgaaagaag tgccgcacgc tgtagcagaa tctctgaata tcgtgattcc
     8461 aattttagcg attttactga ctctctatcc gtttgccatt tgggtggaaa gtgccacagg
     8521 tcgtaatatt ccacaactaa ttatggactt tatggcgcca ttgattgctg tgagtgactc
     8581 gctaggggca atttgcttgt tcgttattgc tacccatttg ctctggttct taggcattaa
     8641 cggctcattg gtactaatgc aactttggac accattccta ctgcaaaata tggcggcaaa
     8701 cttagcagca ttccaagctg gtgaaccgct cccctttatc atcaccaatt ccttctggga
     8761 tttctatatc gtacacgggg caagtggtgg tgtaatagcc ttggcattcc tgctggtacg
     8821 cagtaaatcg gcacacttac gctctatcgg taaaatcggc ttggttccgt ccttcttctc
     8881 tatcggtgaa ccaattgtgt atggtgtgcc aatggtggtt aatccgctgt tctttatccc
     8941 gctgattttc gcaccactag cgaatgcggt tattgcctac ctgattttag attttaacct
     9001 tattcaccgt gtttacttga tggcaccgtg gacaacaccg gcaccgattg gggcatatct
     9061 ggtttctgcc ggtgatattt gggcaccaat tttaagtatt gcactgatta ttttggatat
     9121 tgtgatctac tatccattct tcaaaatgta tgaaaaagtc tgcgtcgaga aagaaaaagc
     9181 acaaaatcta gatgaaaaag cacaacagga gttgctagaa aaagcacgaa tggcagcaca
     9241 ataacactta tttctagcgt aattgagagg ggctaatcga aagattagcc cttatttttg
     9301 caaaaaattg acaaaattta tccgcttgta aacaagaaaa gcgtataatg aaataaaaaa
     9361 ttcaagcaga gataatttga aatgaatgga cctactcaat tagcacattt tcaagaacaa
     9421 atccgaaaag agtatgacgg actaagtaaa cgtttaaaac aagtggcaca gtatgtgctg
     9481 gataatggca acagcgtggt gtttgatacg gtttctacca ttgctgaacg agctgatgtt
     9541 cccccttcaa ccttaatccg ttttgcgaat gcgtttggat ttagcggttt taatgaaatt
     9601 aaacagcttt atcgccaaga tatgatggaa ggcacatcac gttacaccga acgtgtgcaa
     9661 ctttttcgtc aaattgaacc gcttgatgag caaaacagtg agctcaatca tattttagat
     9721 gtgttcgtac agggtaatac gcaggcactg caacagttat cgacacaagt cagcgaagag
     9781 cagttagcac aaacggtaga tattttacac aatgccaaac gcatttttat tgtgggttta
     9841 aaacgctcat tcagcattgc gaactaccta aactatgcgt tgcaccattt ggactatgat
     9901 gtctttatga tcgatggttc gggcggtatg tttgacgagc aattaagccg aatccgtgaa
     9961 ggtgatgcgg tgattgccgt gagcttttcc ccgtatgcga atgaaacact caacgtggtg
    10021 acagcaactg ccagaccggg ggtaaaacat attgcgatca ctgatagcca acttagccca
    10081 ctcctttcat ttagcgatgt gtcgtttatt attaaagaag cacaggtgag tggttttcga
    10141 tcccagtgtg ccacaatgac gctcgcacaa acgattgccg tttcactggc gttgaaaaaa
    10201 gcctagatta agaaagtgaa agacctgcgt aaatacaggt ctttgtctat taaccgatta
    10261 aagcgttaat ttcatcacga tactgcccgg cttttgcacc aaaaataatt tgttgcgtat
    10321 caccgacttt aatgacatca accgccccaa gctttttcag tgccgactta tttaataaac
    10381 cgttgttatg taacaccaca cgtaaacggg ttaaacaagc ttcaacttgc ttgatattct
    10441 ctttgtttcc taaagcatta ataatttcta gaatgataga tttatcagac atatttcctc
    10501 catacctatt tatatttaaa actcttatta tgatatttta aacattttct gatggttaga
    10561 acaattttta ttagtaattt gtataaaaaa acgctaaatg tatctttctt taaaagagtc
    10621 atatcaatga atctcccttg tctttccgca aaaaatctgt ataatttgac cgcttgtttt
    10681 ctcttttgaa acaagttcgt taccctcacc tcgaacgagg gtttattttt tactatcaac
    10741 atttagagga aaggttatgg taaccattcg tttaactcgt ggcggagcta aaaaacgccc
    10801 attttaccaa atcgtggtag tggacagccg ttcacctcgt gatggtcgct ttatcgagcg
    10861 tatcggtttc ttcaacccat tagcagcagg tcaagctgag cgtttacgct tagatgtggc
    10921 taaagtagat gcttgggttg ctaaaggtgc tgatttatca gaccgtgttg cttctttagt
    10981 aaaagaagct cgcaaagcag cttaattttt aagccaaaat taaataagta ggtgagtatg
    11041 agcgaacaaa agatcgaagt tgtcggaaaa ttaggttcaa cctatggtat ccgtggttgg
    11101 ttgcgtctct attcatcgac agaacaaact gagagcattt tcgactacca gccgtggttt
    11161 ttaaaaatta aaggtcagtg gcagcaggtc gaattagaaa gctggcgtta tcatagcaat
    11221 gatttgattg ttaaattgaa aggcactgaa gaccgtgaag ccgcacagtt attaaccaac
    11281 gctgaaattg gcgtggattt gtctgtgttt cctgaattgg aagagggaga ttactattgg
    11341 cacgatttga tcggctgttc ggtagtaaac ttagagggct acacaatggg aacagttgcc
    11401 gaaatgatgg aaacaggttc aaatgatgtg cttgtggtgc gtaataacgg caaagatgct
    11461 ttcggtaaac aagaacgatt aattccgttt ttgtatgaac aagtagttaa aagagtagat
    11521 ctcgccacca aaaccattac ggtggagtgg gacgctggtt tctaacctca ggtatgcggt
    11581 gagctttgga aaacatttaa ggcgttaaaa tgtggattgg tattatttca ctgtttcctg
    11641 aaatgtttaa agcaattacc gatttcgggg tgacaggacg tgcagttaaa caaaatctac
    11701 tgcaagttga atgttggaat cctcgtgatt ttacattcga taaacataaa actgtagatg
    11761 atcgccctta tggcggtggt ccgggaatgt tgatgatggt gcaacctttg cgtgatgcga
    11821 ttcacgcagc gaaaaaggcg gcattagcag tagaaggcgg tgaagctaaa gtgatttatc
    11881 tttcgccgca aggacgtaaa ctcgatcaaa acggtgtgca aacactggct tcaaatcaga
    11941 aactgatttt aatttgtgga cgatatgaag gcgtggacga gcgattgatt caaacagaag
    12001 ttgatgaaga atggtcaatc ggtgattacg ttctcacagg gggggaatta cctgcaatga
    12061 cattaattga tgcagttgca aggtttgttc ccggggtatt aggcaaacag gcttccgcgt
    12121 tagaggattc tttcgcagag ggattattag attgcccaca ttatacccgc cctgaagtat
    12181 tagacggtat gcctgttccg gaagtgctga tgtctggaca ccatgaacaa attcgtaaat
    12241 ggcggttgga acaatcgctg gaacgaacgt ggttaagacg ccctgagcta ttggatagcc
    12301 tagctctgac tgacgaacag cgtgtgttgt tagctaaaat taaaaaacag cacaaaatca
    12361 gttaattcta ggattataga aggtttttaa aatgagtaac atcatcaaac aacttgaaca
    12421 agaacagtta aaacaagact tacctagctt ccgtccgggt gacacattag aagttaaggt
    12481 atgggtagta gaaggtagta aaaaacgttt gcaagcgttc gaaggcgtgg ttattgcaat
    12541 tcgtaaccgt ggcttgcact ctgcattcac tctacgtaaa gtttcaaatg gcgtaggcgt
    12601 tgagcgtgta ttccaaactc actcacctgt aattgacagc atttctgtta aacgtaaagg
    12661 tgcggtacgt aaagctaaac tttactactt acgtgagcgt tctggtaaat ctgcacgtat
    12721 caaagagcgt cttggcgact aattgctaca aaacagtgaa atgcacaaaa gccttgagga
    12781 aactcaaggc ttttgctttt tgtacttaca agcagttatt tttcctcaat gatttacaaa
    12841 tcttgctttc ttttttgtta taatgttaac aagataacat taatgatagg tgtcgatatg
    12901 aaacaattaa gtattagatt gccagacgat gaatttactt ttattaaaac atttgcttct
    12961 gctcataaac tgactttaca aaattttgtg atgtccgcaa tccaagctaa agttgcagaa
    13021 atgtctgcta aaaataaaat atctgaagaa agtaacattc atcaacctct ttctaaagat
    13081 gaaaaaataa tgctaaatga ggcaaaagta ttttattctg ctcgttcgca tttaaaggca
    13141 gaaaatgtga ttcttccgag tgattttatg gagcaaatta aatcaggctg tggagcagaa
    13201 aaaatggcag aaatgatggg atataccaaa gaagattggg agtcaatgaa gtaatatggg
    13261 gcagattaca tttagtaata ttttcacaaa agtgattttt gagaatgtgc tttctgcttc
    13321 aactaaagag aaaataaaac aaatgctttt tcagtctgtg gttgcattac ctcctctcca
    13381 ttcagaaaga aaaatgattt tacagttgaa aaagcaaaaa attaccattt tttatcaagt
    13441 tattgaggaa caatctgtgc aaatcctcgc ttatcaattt ggtggaactg ataaattgac
    13501 aggtgtgtct aaagctcact ttaaaacact agatgccatt tttcaaatga cggatgaaga
    13561 gaaagaagga aaattctaat gtaagcggtt atttttccat atttttttgc aaataacgtt
    13621 tctcaaattt tgcttgatgg cgttcaagca cttccgtcat cgaaatgcca tatttatcgg
    13681 ctaatacaaa aagattatcc atcacatcgc ctaactcttc gattaagtta tctcgttttt
    13741 gctgttgtga agcttcggtt tcgtccggtc gttcacgccc gatttcaatc gctcttactg
    13801 cacaagccac ttcgccgatt tcttctgcta gataagtcac ccgcataaaa gggcttcgtt
    13861 cataccaacc ttgttgttgg taaaactggc gaacccattg ttgatattgt tcaatttgca
    13921 ttttatttct gattcaaaaa gtagggacga aaaatttttc gcccttttat aagaaaatgt
    13981 atcagggcaa atgatgattt gcccctagga gtgttactct gcctcagaga gaataatcca
    14041 gccactatcc agccagtcgc aaatggtgtc tagcattagc tccagctccg cttggtcttg
    14101 cactttggag gcaagtttgt tccacgaaat cgaatctcca ttggcgatac gaatcagtaa
    14161 tgccatttct gcttcgttta actcatcaat ccactcgcca tttacataaa cccgttgagg
    14221 gttctcggtg tagaggattt ttacatttgc atcttgctgt aaccagccgc cggcttcgag
    14281 aatttcttgc acttcgtcag ggtaatattc attgtcagtt tgcaataatt cataacggcg
    14341 ggagcttgcc gcagtggcaa cactgtgagt gagtaactca tcgaactgtt cggaattttg
    14401 gagcaagtcg attaactgat gtttaaacat tttcaccatt ttcggatcaa gcaacgcatt
    14461 cggctgttca ttcggcgtta agcggaacgg aagatgaaat tccgatgaat taatgttgtc
    14521 ggcttgttgt tcgatggttt tgcagagatt ttccagtaaa tcggtcgcat ttggataacg
    14581 taaaccaaaa gagaaagtta aaccttgctc gctttcggaa acaccatagt gagccattcg
    14641 agacggcaca taaagcacat cacccgggtt cattacctcg tccattacca gttcgcccat
    14701 atcatcaaaa atgcggatcg gttggtttgg tttgaattcg gtgcttggat cgcaccattt
    14761 gcctaattgc caacgacgtt gcccatagcc ttgcaccaag aacacatcgt actcatcata
    14821 atgtttgccg acagtgccgt tgagcggtga gcaagaaacc ataatgtcat cacgttgcca
    14881 ttgcgggata aaaccaaaag cctgccaaag ctcgcctagc tcaggagacc attgctcgag
    14941 gttttgcacc attacagacc attgtacagg taactcttcc aaatcttcct caacaagcgg
    15001 gctggattta acagaccatt tctcgttttc gcattgaatc aggcgtgcag tgacttcttc
    15061 ctctaatgcc agttctaaaa tatcttccgg ctcaaacaat ccgacaattt ggggtaagcc
    15121 gttacgaatt aatagcggtc gtttttgcca atattctcgc aaaaaggttt cagggctgat
    15181 attttcaggt aagcagaatg gaatgttcat aatggctcct tgctacgtgc ttctttgaga
    15241 ttactgatat tctacccgag aaatcaggaa aaacgggaaa ttttttatga tttagcgaca
    15301 tcattcacat tttgaagagg aaataatgaa aaaggcgaac attgttcgcc tttgaaattt
    15361 attttaaacc gagttttttc tcgagatagt ggatattggt gccacctttg cggaattctt
    15421 tatccgcaag aatttgagta tgtaaaggaa tattggtttt aatgccttcc acaatggttt
    15481 cggaaagggc attttccatc cggcgaatcg caatatcacg attttcagca aaggtaatca
    15541 atttaccaat cattgaatcg taatgtggcg gcacgctata gcctgagtaa atatgtgaat
    15601 cccaacgcac acctaaacca cccggaacgt gtaaacgggt aattttaccc ggcgatggca
    15661 agaaggtgtt tggatcttct gcgttgatac ggcactcaat ggcgtgacct ttcactttaa
    15721 tatcatcttg tgtgatcgaa agtggtaagc cggctgccac acgcagttgc tcttttacca
    15781 agtccacacc ggtaatcatt tcggttacag ggtgttctac ctgtaagcgg gtgttcattt
    15841 caatgaagta aaactcgccg ttttcatata agaactcaaa agtacctgca ccacggtagc
    15901 caatttcacg gcaggcattg gcacaacgct ccccaataaa ttgacgcaat tcaggtgtaa
    15961 taccctgagc aggtgcttct tccaccactt tttggtggcg acgttgcatt gaacagtcac
    16021 gctctgctaa ataaaccgca ttaccgtgag tatcggcaag tacttggatt tcaatatggc
    16081 gtggattttc taaatatttc tccatataca ccatatcgtt attaaatgcc gctttcgctt
    16141 cggctttcgt cattgcgata gattcttcca aatctttctc gtgatgaacc acacgcatac
    16201 cacgaccgcc accaccacct gatgctttga tgatcaccgg gtagccgata cgtttagcga
    16261 tttctttatt tttcttcgga tcgttaccaa ccggaccgtc agaacccggt acgcaaggca
    16321 cgccggcttt tttcattgca ttgatagcag agactttatc gcccattaag cgaatcacat
    16381 cagccgttgg accaataaag ataaagcctg atttctcaac ttgttcggca aagtttgcgt
    16441 tttcagataa gaaaccgtag cccggatgaa tagcatcggc attcgttact tcggcagcgg
    16501 caataatcat cgggatattt aaatagcttt ttaccgatgg agcaggaccg atacaaatgg
    16561 tttcatcggc taatttaacg tgttttaatt cacggtcggc agttgaatgc actgcaaccg
    16621 ttttaatgcc caattcttta caagcacgca aaatacgcag ggcaatttca ccacggtttg
    16681 cgataacaac tttttctaac atagggaaat tccttgtgtt ctagaaaatg tagggcgtgt
    16741 tgcacacgcc cgttggataa tttaaggaag agcttattca atgatgaata atttttggtc
    16801 gaattctacc ggttcgccat cattaactaa gatttctttt accacaccgg ctttgtctga
    16861 ctcgacacgg ttcatcattt tcattgcttc tacaatacat aacgtatcac cgattttcac
    16921 ggtttgaccc acttcaacga acggttttgc atctgggctt gggctacggt agaaagtccc
    16981 caccattggt gaaagcactg cgtggccact cgtttctgcg gcttttggtg cttcagccgg
    17041 agctgcaaca ggtactgtcg aagctacttg aggtgccgct ggtgcaacaa caggagctgc
    17101 tgcatattga actgcagctg gtgcaacagc tggagcagca cggctaatac gcaccgtacc
    17161 ttcttcttca gacacttcta actcggtaat gccagattct tcaactaatt caataagttt
    17221 tttgattttg cgaatatcca taataagatt ccgtatgtga ttaaataaaa taaaaaagag
    17281 aactccacat ttggggtata aattcaaatg tagagttaaa aaatgctggg cgtagaatac
    17341 ctgaatttcg ctaattttgc gaataaaatc tgataatttt ggcgaaaatg gacgatttta
    17401 gcattcatcg taccagttag gatttttgga aaatggtgac tcacaagcga ttgaaaattg
    17461 ccaatttttt gtaaaaaaca accgcttgtc agattatttc aataaatctt catttttctt
    17521 gtaattccac ttgctaccgg gcttgtcgat atactgaaaa tattcgttgg taaaagtacc
    17581 ttgagcacaa gttactttgt ctcggcggaa atttacttct ttatcaccaa tggcattatt
    17641 tagggtgtca ggaccggtca taacaaacac gccaccttca atccgacgat tctcaatatt
    17701 gctgataatc agctcaaggg tgtcttttag aatccaattt ccagcttccg aagccaagaa
    17761 aaagttggtg tatttatcac ggcgtttaat taacacttcg ctatcatttt cgccaataat
    17821 tttagagagt gggtaaacca aatgcccgtc aatatcaata taaatgccac cttctcggag
    17881 caaagtaaaa attcgccaaa aatcagcttg tgccgcacca tcggttaatt tgctataggc
    17941 gttaaaggtg cgttcatcgg cgttggcctt gatgtatgcc tctcgttctt ctgtgctaac
    18001 gtagcgataa tcgtagctca atgacattag gcggttaaac agataattcg catacattgg
    18061 caaggtgact ttgttagaat aattcgtttg ccaaatggtt ttggtaattt tgctcggaat
    18121 gcttgattgg atttttgccg ggctatattc cggaatggtg aaacgttttt tcggaaaaag
    18181 tgcatggaac ggataactca atattttgac gatattaccg aataaacgga agactccgtt
    18241 acagatcaca ataaattgtt catttttaac agccatttta ttaccttatg cttttaagtg
    18301 tgaaattgca aaatccaacg catattcata gccttttgcc cctaaaccgc aaataacgcc
    18361 ttttgcaata tcacttagat aggagtgatg gcgaaaaggt tcacggctat gaacgttaga
    18421 caaatgcacc tcaacaaacg gaatcgacac actcaataac gcatcacgaa ttgccacgct
    18481 ggtgtgagta aatgccccgg ggttaataat aataaaatcg gtatgctgaa aggcttggtg
    18541 aatacggttg ataatcggct cttcaccgtt ggcttgaaag ctctccagct caacatcttg
    18601 ggccgcagcc aattttttta agtggttttc aatatccgcc aaagtttgcg aaccgtaaat
    18661 ttgtggctca cgtttgccca acatatttaa attcgggccg ttaaggagaa ggattttttt
    18721 catatttact tattcaactt gtaattcata attaagccat tcacggtttt ctttcgcccc
    18781 caagcgttga taaaaacgaa taccaccgtc attccaagga ttttattgtc ttacaatgat
    18841 gtgccttcgc ctcatttttc aaggcttgca ttaacgcctc tcccactttc tgattccgag
    18901 cagtttcatc aacataaagc tctttcatat aaatagcggg gcggttttgg gcagtgtaag
    18961 gaagaaaata ataaaccaat atgccgataa tgttagacgc attttcagcc actaaacagt
    19021 aaaaatcggg tgggcttttg cgaaagccgg attccattac aacttcagga gtaatcgcaa
    19081 aagaatcgat atagtgctca aacacagcca gtttttgcat cagagggaac acttggtggg
    19141 tatcttgttc gaccattttg cggattgtaa atgccataaa attccttaca agcggtaaaa
    19201 aaatccctca cttttgcaaa gcgagggagg ttttaattat tcgtcaatag aacgtaataa
    19261 gtcgtttaag cccactttgc ttaaggtttt ctcatccact tttttcacaa tcaccgcaca
    19321 gtagaggttg tgtgaaccat cttttgatgg aagcgagcct gaaaccacaa cagagcctgc
    19381 cggcacacgg ccgtaatgta cttcgccggt ttcacggtcg taaattttgg tagattgacc
    19441 gataaacacg cccattgaga tcacgcagtt atcttcgaca atcacgcctt ctacgatttc
    19501 agaacgtgca ccgataaagc agttgtcgcc gatgatggtt gggttcgctt gtaatggctc
    19561 taacacacca ccgatgccca cgccaccaga aaggtgaaca tttttaccga tttgcgcaca
    19621 agaacccact gttacccaag tgtccaccat tgtgccttcg ccaacgtatg caccgatgtt
    19681 cacgaaagat ggcattaaca ccacgttttt ctcgatatgt gaacctttac gcaccaccgc
    19741 acccggcacg gcacgaatgc catctgcttt gaattgctct tcggtgtagt tgccgtattt
    19801 ggttggcact ttgtcgtaga atttggtttc tgcaccgtcg atgatttcat tgtcggcaat
    19861 acggaatgaa agtaataccg cttttttcac ccattggttt actacccact cgccatcttt
    19921 tttctcggca acacgcagtg aaccgttgtc taatcctgcg atcacctctt ctactgctgc
    19981 tttggtttca gcatcaacgg ttttcggagt aatttccgca cggcgttcaa atgccgcttc
    20041 aataatagct tgtaaagaca ttgttgtgtt ccttcaatat ataaattaaa acagaaaatt
    20101 cggctcactt tttaacatag aaaggcgttt atttccacaa gaaaaaacat atcgcagaaa
    20161 tttagtttat aattccaagc cacttatttg atacaagcgg tgatttttgt ggaaaatttt
    20221 gcaaatctgc ttaccggtaa aacgcgtgag catttagtgc cgttgccgaa cgctctttcg
    20281 gataaacatt accttcagcc tcaggtggtt gaggcttttt tgacgttgca gcatgctgca
    20341 aaacaagccg gctttaattt acagcctgcc agtacttttc gtgattttga acgccaaaaa
    20401 gggatttgga atgcgaagtt taggggtgag cgtaaggttc acgatgataa cggggttgcg
    20461 attgatatgg cggcgttatc ggatcttgaa aagtgcaaag caatgttgag atggtctgcg
    20521 gtgccggggg caagtcggca tcattgggga acggaaattg atatttttga ccctgattta
    20581 ttgccggaaa atacgccttt attgcttgag ccgtgggaat atttggaagg tggctatttt
    20641 gccgatttaa ccaagtggtt acacgttaat gcggaaacat ttggctttta tttcccgttt
    20701 gacggtaaac attctcgagt gggctttgag ccgtggcaca ttagctatcg cccgatttca
    20761 aatgaatatg agcaacgctt taacgatgaa atcttaaaag ctgcgtggca agatgaagaa
    20821 gtggcgggta aggaatgctt acttgaacat tttgaagaat tactaaaatg atccaattaa
    20881 ttaacgaaac ccaacaacac gacaaattcc gccaaatttg cgacaaatgg cagctggttg
    20941 aagataaatc cagcccgtta gccttagtgc taacggagga acgattggaa ctacgcaaat
    21001 tagacgaacc caagctcggg gcgattgcag tgaattttgt ggacggtacg atggcacatc
    21061 ggcgtaaatt cggtggtggg cgaggtgaag ccgttgcgaa agcggtcggc attaaagggg
    21121 attatttgcc aactgtgatt gatgcgacag ccggtttagg gcgagatgct tttgtattag
    21181 cagcggttgg ttgtaaagtg ctgttagtgg aacgcaatcc aattgtcgct gccttgttgg
    21241 aagatggttt aaaccgagct tatcaagatg tggaaatcgg cagttttatg caagaaagaa
    21301 tgatcttagc cgatgttcga gacatttctc agctagatcc acaatcccaa atggctgagg
    21361 tagtgtattt agatccgatg tatccgcaca aacaaaaaag tgcgttggtg aaaaaagaaa
    21421 tgcgggtgtt tcaacattta gttggggcag atttagattc ggacagcttt ttcttaccgg
    21481 caaaaggatt ggcaaaaaaa cgtgtggtag tgaagcgtcc ggactatgcc ccgtttttag
    21541 cggagcaaaa gcctgatttt tcacacacca ccaaaaatca ccgttttgat gtttatcttt
    21601 ctcacctgaa aaatgattaa aggtgggtca tgcgataggc aagcggttat ttttacagta
    21661 aaatttacaa attatgttat cgtttattta tatttaaaaa ggcggttatc gtgccacaac
    21721 gtgattatgt cgctcgttcc aacgagaaaa aaagtaaaaa aaatcaaaaa gaaagtaatg
    21781 ttaaaaagat tttaatgcgg attatcgggg taattttatt cttcggtatt ggtttatggt
    21841 ttttgaaatc cagtgcacct gtaccaacag ttccgtcagc accgcagcct gctaattcac
    21901 agactaaaag cgaattacca agtcgaccgg aagagacgtg gagctatatt cgtgatttag
    21961 aaacccgtac ggtaattacc gataatagcc aaacttcaca agaacgtttg gcacaattaa
    22021 cggcggaaca aaagcagcaa attgaagaaa gacgcaaaca agaagaagca cgcttagccg
    22081 ctgagcaagc tcaacaaaag cctgcgaccg atgtatctgc tacagaattg gctccgaaaa
    22141 cagaggaagt taagtcgtta acggaagaag aattagcagc aaaaaaagca caggagcaag
    22201 ctttagcaca aaagcaagcg gaagagaaac gcagacaagc agagcttaaa aaacagcagg
    22261 aagcgaaaaa agagcagccg gctaaaattg tagcaagtgc tgcaacactg gcagataaag
    22321 ctgcaaatca ggcgggtaaa tttgggttac agtgcggtgc atttaaaaat aaagcccaag
    22381 ccgaaaatat gcaagcaaga ttggcaatgg caggttttaa cgcccgtatc gcaagcagtg
    22441 ccgattggaa ccgtgttttt gtcggcccga taggtgacag agcggcaact tccagagctc
    22501 aatccaatgc acgcagtgta gcggaatgtg tgattgtggc gatgtaaaat tgattgaaat
    22561 attgaagaga gctataggct ctcttttttt atatcccaat cgcatatttc aaggcttgct
    22621 ttttgatggg tgacacttta tcagccaata ctaaaccgac attgcgggca attttgagcg
    22681 gtaataaatc ggtcttaaac gctttataaa acacgtccat gcctgtttgc atcagtaaat
    22741 tatccggttt acgtttttgc tcatagcgtt gaagcacctg ctcacttgca aaatttttgc
    22801 cttttttgac cgcttgttcg atcacctcaa gcaaggtttt aacatcttta aagcctaaat
    22861 ttacaccttg tccggcaagc ggattaatgg tgtgagccgc atcgccgact aataccaccc
    22921 cgttttgcac atagtgctga gcgtgctggc gggttagcgg gaaagcccct gaagcctgca
    22981 cctgaatgtt gcctaattct gcgttgagcc ggcttgggaa atgttgctca atcgcaactc
    23041 ccagcttttc tgctggaagc attttcagtt cggcaatttt ttgtggtgaa tcgtaccaaa
    23101 caacgcagcc gtgattgccg gaaagcggta aaaaggctcg agggccggtt ggatagaatt
    23161 gttgccaagt gccgcttgga gcaggttttt cggtggtaac ggtggcgagt aaacagtgtt
    23221 ggcgatattg ccaagcggtt aaaccaatgc ccgcccattg gcgaacctgt gaatttgcac
    23281 cgtctgcggc aatcagcagt ggggcagcaa aggtgttgcc atcaaccgtc acttcccaat
    23341 actcgcccgc tttatttgca aaaatttgct caaatccgac cgcttgtagg cagtttggat
    23401 attgctttaa ttgctcccat aacgcaattt gaataacgtt gttttcgacc atatcgccga
    23461 gcttttccaa acccaaatca gctgccgaaa aaagagtgtt gaatccatca atttcccagg
    23521 tttcgagctg ggtataaggg gtgcttctca ttgcaacaat ttgctcccac acgcccaatt
    23581 tttctaacag ttgaatcgag cccatactaa tggcggaaat tcgcaaatcg tagtctgaat
    23641 caggattaaa ggtcggcaga gggtttttct ccaacaaggc taaacgcagc ccctgttttg
    23701 ctaagcctag agctgttgct gccccaatca taccgccacc gattacaatc atatctaatt
    23761 cagttttcat tttttcttcc tttttagtta ggcaaaatac tgctaaaacg ccttgaattg
    23821 tagtgcattt cagattagga tcaaaccgat ttatctattt atctaaggag cgttttatgt
    23881 cttgcaaaac tcatgcaaac cacgagcacg aacacggcga aggctgtggt catactgcta
    23941 ttaaacataa cgaccatatc gactatttac acgatgggca tttacaccac aacaaacacg
    24001 gcgatcacta tgacgaacac gttttagaag tgaatgaaac caacccggca gactgtaatg
    24061 ccgcccattg ctgcggcgac cacgttcatg gtgaggtttg cggacacgaa gctgtgccgc
    24121 acggcgatca tatcgactac atcgtgaatg ggcgtttgca ccaccaacac ggcgaccact
    24181 gcgatgacca cgggccggtt gaaattgtga aataagattt ttgatgggag gttttagcct
    24241 cccattatta tttttgcgat ctcgctcgaa aaattgaaca ttcctgctac ccctcttccg
    24301 attttccttt tatgctctcg gtattgattt ctaataccga aatgtgatga ccttagcgat
    24361 tgtttacagc cgagcctcca ttggcgttga agccccgttg gtgacgattg aagtgcatat
    24421 tagcaacgga caaccaaaat taaccattgt cggcttgccc gaagccacag tgaaagaggc
    24481 tggtgatcgt gtgcggagtg cgttgctgaa cgctaatttt atctacccgc cacaacggat
    24541 cacgattaat cttgctccgg cagatttacc caaagaaggc ggacgttttg acttgccgat
    24601 tgcgattggc attctggcag cctcagggca aattgattct gatttattaa cgcagttcga
    24661 gtttttgggc gagttggcac tgacagggca tttgcgagga gtgcacggca cgattccggc
    24721 agtgatttct gccgataaag ccaaacggca gatgatctta gccaagcaaa atgcgaatga
    24781 ggcatcgctt gtttccaatg ccaccaccta ctttgccggc tcgttgttgg aggtggtaaa
    24841 tatgctcaac aaacgggata aactgccgat ttgtcagcac atttcgcaac attctgccga
    24901 aattcgaccg cttgtcagcc gagatcttac tgatattatc gggcaacaac acgccaagcg
    24961 agccttaatg attgccgctg ccgggcaaca taatttgctg tttctcggac caccgggaac
    25021 gggtaaaaca atgttggcaa gccggctggc ggatttactg ccggaaatga ccgatgagga
    25081 ggcgattgaa accgcctcgg tgaccagcct tgtgcaaaat gagctgaatt ttcagaactg
    25141 gaaacaacgc ccgtttcgtt cgccccatca cagtgcatca atggtggcat tagtgggagg
    25201 tggctgtgaa aactagaaat aaatgtcaaa aacaagaaat aaatgtcaca aatctttctc
    25261 taatttcgct ataattcgat catcaaaact ttaaggggaa atccgttatg ttctacctca
    25321 ataacgacaa tttcaaacga gaaccttatc gtggatattg tccgagtcac cttgaaaagc
    25381 tttttactaa accacacctt gatattagag gtaacggtta ttattaccct gacaatgaat
    25441 atgttgtagc ttggtatgaa tcggacttca ttttcaaatc aagaaaagct caagcacatg
    25501 caaaagtaaa gcttgttaat ttaacttgcc ccaaatacac tggcaaaaac agtgctgaat
    25561 atttaagcgt tttgtatatc tccgttcccc ttaattatct acattatttc actatcggca
    25621 gtatctggaa aggcggtgtc gccaaagagc agtttgctct cgaagaattt tacattacgg
    25681 ttgaagctga aaatcaagat ggtaaacgag aaaacctctc aatcgtttca ttcggtgaga
    25741 gtgaggaaaa cggtttagag aaaccatttg attacacaat ctacactatc cccacagaat
    25801 atcacaacta cggtgatgac ctaaaccgac tactttccat ctcttaccaa aatcaaaaat
    25861 tcattatcca tccgctacat atttttatga tgcactacgg gtactctacg gacatcaagc
    25921 gtatcttggc aacataccca cttgacgagg taagagaacg cctatttata gataaggtcg
    25981 ttgagaattt tgatgtagag cgttatgtcg ttttaccgaa atactttgta aaaaaagatg
    26041 cgattttcct ctatcacttc aaatatgacg aagagactac gggaacaagg gtaaaaaagc
    26101 ttgtaagcca gtttaggtta aatattcaca atcaaacaca tccaatagaa atagattttt
    26161 ggcacacgca aaaggttgaa ttgaaaatcc gtggtgttcg acttggaaat gctgtgttat
    26221 gcgcagaaat tatcggtctt aatcagcccg aaggcgaaga tattacgcta gtgctatctc
    26281 aatcgaaaag agaaaaatcg ggtaataaaa ccgaggaaca aaataacgag gtaaataacg
    26341 ttcctattac cagagtttat acacgagaac ctgaattgga tgagttacca ctcaccgata
    26401 actccccaga taatcgaaca gtcgaataca acaagcgaca atttgaactc ttgggccgtc
    26461 aacgccaaat cagagcgctc aagaaagcac gcgaagagag taatcagaaa atgaaagcct
    26521 tgactccaga tgagatagac tcactgggtg taggtgaatc agatggccga aacggtaagg
    26581 ttggactcgc tttctgtttc cttgatgata cacctgttgg caaaagctcc aaactataca
    26641 aattatggca gcacgcgaag gctgttgcgg aatggaatca cggtgaggcg cactggtaca
    26701 cgcctaatct cggttttaga aatgacgatg aactccttcc cgtttcctta gaaaccaaca
    26761 aatgtttcga ctaccctgaa atcgcgataa ttatccgcct ccaaatatac ggagaaacat
    26821 ttttcctgat tgatttctca atgaagcaaa gagatataag cattcgtggc ttagggtata
    26881 aacccgatcc aaacgaagat tttctctatg aaagtgatat gagcaaaagc gaattatccg
    26941 aattattgtc cgcagttcat catcatgaac atctgccaaa agagtacata gagaaaaaga
    27001 acaaagaaaa aaccaaactc actacattta accatagcga agccgaaagt agtaactggg
    27061 cttataacgc ggtgcaaaaa ttaacttcaa gggcaattac taagccgaca tatttttaat
    27121 tatttttatg aatgcagaac aacgtgtaat tgttactccg acattttggg gtaaattttt
    27181 tggaaaaatt aaaagtgttg aacttcaaca aaacaaagtt atcgtaactg acaaaaagaa
    27241 taatataact gaacatgatt taggaaaaac ttttgacttt ccagctatcc agaagtcttt
    27301 ctttggtact aaattatttt ttaaagacga tagcacagaa gttgttttat caaaacttgc
    27361 gaaaaaacaa actgatagtc tattacttga aatcgaaaaa gtagttgcat ctaatattaa
    27421 agtgaaagta aaagagggtt ttcaacactt tgcaaattta gccgaaaatc aatatctcag
    27481 agattccgac attcctacat taaatgatcg tgtaagattg tcagtgcttt cctatgggga
    27541 taacaaagaa cattttcaaa aatactttga tgaaagtttg gttaagaaaa ttcaatatat
    27601 ctcttcactt tttcctgtaa atgccataaa tgctcaaaca attcgaagag aatacgagca
    27661 acatgtttta aatcatcgca agcatttctt tgatgtcatt gaatctaatc cgcttactga
    27721 gcaacaaaga ttgtcagtca ttcggaacaa cgacatcaat atggttcttg ctgccgcggg
    27781 gacaggaaaa acgtctgtaa tggtcgcaaa agcattggac ttaattgatt ctggtgcttg
    27841 taaaagcgaa gatattttga ttcttgcata caaccgcgat gcagcaaccg aactatccga
    27901 acgcttacaa gaacgtgcac gagaagccaa tttagatctg gaaaatagcc ctagcatctc
    27961 gactttccat gcgcttggcc gaagaattat taaagaatgt ggaaaatcag tccacttgtc
    28021 aaaatttgcc gaagatccga tgaaattaga tagatggttc aacaaatggc tagaggacta
    28081 catcaaagaa gatcctgata atcttgcaaa attcattcaa cttgcatacc aacctatcga
    28141 tccattccaa ttcaaaacga aagacgaata cgatagatat gtaaatgaca atgactatcg
    28201 aaccttacaa ggcgaacgcg ttcgtggtta tcaagagtta ttgatcgcga actggctttt
    28261 tagccacagc gtagaatatg agtatgaacc aaggtatgta tcaaaacgcc gtatcgagat
    28321 tggttttgac tacaaacccg atttctcttt gggtgatggt gtttaccttg aacatttcgg
    28381 cattgaccga caaggtagaa ctcgcgcaga tattaacgcg caggaatata atgccaatat
    28441 ccaaagaaaa cgtgagttac acgccgaaca taatacaaca ttactggaga cataccacta
    28501 caactgggtg gaaaatacgt tatataaacg actagagcaa ttgatgaatg aacagttcat
    28561 tcctctgaag ccaaaatcac aacaagagat tttagatgca ctcaatgaat caggaatctt
    28621 caaagaaaac aaaaatcgct atttgaagtg ccttcaagct attcgtacag agcgattaga
    28681 ctatcaacaa atcttaaaac gtctaaccga tgcgaaaatt gtctatgcta aagaatatgc
    28741 gacattgctc atgcgtattc atgatgccta cgttaaagaa ctacgtagcg caaatgaaat
    28801 cgactttgac gatatgattt tgttggctac tcaactggtg aaaacaggtg agtttaaacc
    28861 taaatggaaa catattttag tcgatgaatt tcaagatatt tctatggctc gattggagtt
    28921 attgaaagaa atttatacta aagggcctcg accgatttgg actgttgttg gagatgactg
    28981 gcaatcaatc tatcgtttct ctggcggtaa actagaagtt actacgcgat ttaatgatat
    29041 ggtcggctca cacacgctaa gtaaactaga aaaaacctac cgctataaca atagtattgc
    29101 tgacacagca ggtcaattca ttatgcaaaa tcctgagcag tatcagaaaa atgttgtaac
    29161 gcatacaaag gtcgctgatt cttgtgttca tttgtatgac tctcatgtcg taaaggatga
    29221 aaaatcagaa gccaatatca gtttaaaagc ctcagcaata ttaaaactga tacgtcaaaa
    29281 agcacctgaa gccactgtcg caattttggc tagataccgt taccttttag aagatgcaaa
    29341 aagtgtaatc aaagataaga atgttaaatt ttggacgttc cacggctcaa aagggttgga
    29401 agcagattac tgcattttac ttggtttctt ccaaggaaaa gtcggatttc ccaaccaaaa
    29461 taaagaagaa gccgttgtag aagcattgct tcctatgcta gacagttttc cacactcaga
    29521 agaacgtagg ttattttatg tggcattaac gcgtgcgaaa aaagaaagtt atttgatcgc
    29581 agatgcgaac gcgccatcag aatttatcaa tgaattatta tcaccgaaat acaagataga
    29641 tattgtgtca aaacgattcc aagaacgtta tcggacaatc tttaaatgta atgaatgtag
    29701 cactggctat ttcgtgatga aacaaggtaa atttggtcag ttctattctt gtacatcagg
    29761 ggaagtatgc cgctcttcgc cacggatttg tgaaaaatgt ggccgtccta tgaagctgcg
    29821 agaaggtaaa tttggtcagt tttggggatg ctcaggatat ggaatcaaag gcgatcaatg
    29881 tacgaatact cgtaagtatt ttatgtaata tattattttg gaggattttg tggatttatt
    29941 tgaatcaaaa aaacaattaa tagagttaat taaaaagtac gatagtgata aagaaattta
    30001 ttcttcatcc tcatacaatg agtctcagtt aagaactgac tttttagacc ctttctttgg
    30061 tttacttgga tgggatataa ctaactcaaa gaataaactc acatctgaaa gagaagtgat
    30121 tgttgaagaa ccactaaaag aaaaagtttc agaaaatgta aaaaaaccag attatacatt
    30181 tagattcaat tctcaaagaa agttttttgt tgaagctaaa aagccaagtg tcaaaatcaa
    30241 gactgaccct ttacctgctc atcaggtaag acgatatggc ttcacagcaa aattaagtat
    30301 ttctgtttta tctaattttg aatatcttgc tatatatgat tgttcagaaa tagttgatgt
    30361 acaacaagat gctctatacg caagggtacg attatatcac tatacagaat atgtgaaatt
    30421 ttttgatgaa attatgaatc tcttaggtag agaaagtgtt tattcaggtc attttgataa
    30481 tgaatggcgt gaaatctctc aaaaaataga aaactctaag caaacagtgg atgaactatt
    30541 ttttgaacaa attaataagt ggcggcatgt tctgggtagt gaattactta aaattaaccc
    30601 ttgtatttca aacaatgaat taaatgatgc agttcaagac tatattaata gcataatctt
    30661 t
//
LOCUS       DANLVT010000016        30622 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.016, whole genome shotgun sequence.
ACCESSION   DANLVT010000016 DANLVT010000000
VERSION     DANLVT010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 30622)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30622)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30622
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.016"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            1..507
                     /locus_tag="PXC99_000642"
     CDS             1..507
                     /locus_tag="PXC99_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HDL5417123.1"
                     /translation="MAMSNIGLDKEIAKKLADELNGLLATYQVFYTNVRGYHWNVRGV
                     NFFELHAKFEEIYDDLVTKVDEIAERILTLGHTPQNAFSQYLTKSQIQEHIGVSAAQE
                     CLRGTLNGFKTLLGQQREILALANDANDEGTASQMSDYIKEQEKLVWMFTAACAECSD
                     YAQGCSCN"
     gene            566..1279
                     /locus_tag="PXC99_000643"
     CDS             566..1279
                     /locus_tag="PXC99_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HDL5417124.1"
                     /translation="MAMSQGFQFKQFFIRHDRCAMKVNTDGILLGAIAHIKDCQNILD
                     LGIGSGLVALMLAQRTDDCCHITALELEPNAYQQAVENAQNSAWANRISVLQGDVMQQ
                     AFEQKFDLIVSNPPYFADSLAARTTERDLARSISHYSHLNWLAKAKPWLAENGKITLI
                     LPIAAAEKLVDQSEQIGLYCVEQWLIFTKSGKLAKRSIVSFSLNKQKREHKELIIYDL
                     DNCYTTEFKRLTQDFYLNF"
     gene            complement(1390..2394)
                     /locus_tag="PXC99_000644"
     CDS             complement(1390..2394)
                     /locus_tag="PXC99_000644"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005651072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDL5417125.1"
                     /translation="MAFNLKNRHLLSLVNHTEREIRFLLDLARDLKRAKYAGTEQQKL
                     KGKNIALIFEKTSTRTRCAFEVAAYDQGAHVTYIDPNSSQIGHKESMKDTARVLGRMY
                     DAIQYRGFKQSVVQELADYAGVPVFNGLTDEFHPTQMLADVLTMIENCEKPLSQISYV
                     YIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEDAFVKMCEKFAAESGARMTVTED
                     IETAIKGVDFVHTDVWVSMGEPLESWTERIDLLMPYRVTPELMQATDNPKVKFMHCLP
                     AFHNSETKVGKEIAEKYPALANGIEVTEEVFESPMNVAFEQAENRMHTIKAVMVASLA
                     "
     gene            complement(2482..3321)
                     /locus_tag="PXC99_000645"
     CDS             complement(2482..3321)
                     /locus_tag="PXC99_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HDL5417126.1"
                     /translation="MQSYPYLLVNVFATSHFGGNPLAVFYEADGLTDLQMQLIARQFN
                     LSEVVFIQSSTDSQAVKKLKIFTPDYEMPFAGHPTVGAAFVLHSAFDFPTTYRLQTNA
                     GLVAIQHQHNVTTFALTNGVNLENTPLSRAECASILGLNVADIASEPCYVNTGVEQLL
                     VELASQQAVEKCKINANLAEKAFLKDSVYVWCREGNEAKVRLFFQSQGSIVEDPGTGS
                     AAANLGGWHIAQGKIPIQLQISQGDEIQRPNRLLLKVDQNGKIFVGGEVILVGKGEFY
                     LPE"
     gene            3511..4845
                     /locus_tag="PXC99_000646"
     CDS             3511..4845
                     /locus_tag="PXC99_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL5417127.1"
                     /translation="MLYAEFLLLLAFLYAGSRYGGIGLGVVSGIGLFVEVFFLGMPLS
                     APPISVMLVILAVVTCASILEAAGGLKFMLQVAERILRSNPKRITFLGPLVTYLMTLM
                     LGTGHSVYSIMPIIGDIALKNKIRPERPMAAASVASQLGITGSPLSAAVAYYLTEIVK
                     LPGFEGVTLLNVVGVTITATFCGVIAMSLYSLRRGKELEDDPEYQRRMQDPELRKQIE
                     QTSATSLDEKLPASAKNSVYLFLAAIATIVIIAMIPAIKPTVAATGKVAGMDQIIQIV
                     MLTFGGLILILTKTDPKKVPNGIVFKSGMVATIAIFGIAWMSDTYFTHAMPAFKEGVT
                     EMVRAQPWTFAFALFAVSVVVNSQAVTAKMLLPVGIAMGLPAPLLVGLMPATYAYFFI
                     PNYPSDIATVNFDVTGTTKIGKYYFNHSFMAPGLVGVITACIVGIAVANVLI"
     gene            complement(4925..5335)
                     /locus_tag="PXC99_000647"
     CDS             complement(4925..5335)
                     /locus_tag="PXC99_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HDL5417128.1"
                     /translation="MNSTLTNLQPLAFLITRVVAGYMFLLHGTAKFFEFPMSMTNGNG
                     SVPLASIYGVGGILEIVGGIFFILGLFTRQTAFILSGMMAYAFFIAHGAQGNVLLPLL
                     NGGELAGVYSVLFLTYIFIGGGKYSLDAKLFNKA"
     gene            complement(5458..6135)
                     /locus_tag="PXC99_000648"
     CDS             complement(5458..6135)
                     /locus_tag="PXC99_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDL5417129.1"
                     /translation="MNLFGFRCFHCNHPLAIGVQGICSHCQKLLKPTPYCRHCGMSAV
                     EFRNACGYCLKNEPKWHKLVRVNEYRAPLSHWVHQFKFQQQYWWDQALARQLLLAIKQ
                     AQREQVLSLPEVIMPVPLFWHRHWKRGFNQSELLCDWLSKWLQIPLDTQSLQRVRATV
                     SQRELTAAERRKNLRGAFFYQPLKAYKRVAIVDDVLTTGSTLNVICAELLKAGVVEIQ
                     VWVLARA"
     gene            6253..7065
                     /locus_tag="PXC99_000649"
     CDS             6253..7065
                     /locus_tag="PXC99_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDL5417130.1"
                     /translation="MKSLQKPIKIVFFDIDDTLYVKHKAYIPKSITEQVLPRLKAKGI
                     IPAIATGRNHGCFPEALKPYLNPEIGFELFVTINGQYNFYKDQIISDYSLSREQIERI
                     IEKANALGILYAFITPMTIAVSETNPIVHEAVLPITPNYLIDPHYYEKEKIVQMLLFY
                     TEEQKQAVENSGIFANDLKEARWHPNAVDILRKENSKARGIQDVLATLNIEIESAMAF
                     GDGINDLEMLPTVGVGVAMGNGVPELKAVADFITKPLEEDGILYALETLEVI"
     gene            complement(7113..7382)
                     /locus_tag="PXC99_000650"
     CDS             complement(7113..7382)
                     /locus_tag="PXC99_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL5417131.1"
                     /translation="MGLLYLLLLNTLIGYGSYGEALNHWDTSKVSIVTTMLPIFTMIF
                     SNLSYYFYPHIFAKPDMNWISYLGALVVVSGAILAIAGDKLFRRN"
     gene            complement(7355..8032)
                     /locus_tag="PXC99_000651"
     CDS             complement(7355..8032)
                     /locus_tag="PXC99_000651"
                     /inference="COORDINATES: protein motif:HMM:NF013088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5417132.1"
                     /translation="MKQRPLLGFSLALTAAMTWGTLPIAAQQVLKVIDAQTLVWVRFV
                     VASVGLLLILGFAKRLPKLTACSKKELGLILLGVCGLSANFFLFAEALHYVSPTINQV
                     LWQLAPFSMILLGVLLFKEKFGLFQKIGFVLLIAGLVAFFNDKFAEILQLNTYALGVL
                     LSAGASLIWVLYGVAQKLLLAKFNSQQVLFIIYIGCSLLMLPFASPAQLGNLEDGFLW
                     GCFIYCC"
     gene            complement(8134..8391)
                     /gene="rpmA"
                     /locus_tag="PXC99_000652"
     CDS             complement(8134..8391)
                     /gene="rpmA"
                     /locus_tag="PXC99_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007369914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HDL5417133.1"
                     /translation="MATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK
                     FHAGSNVGMGKDHTLFATADGKVKFEVKGEKSRKYVSIIAD"
     gene            complement(8412..8723)
                     /gene="rplU"
                     /locus_tag="PXC99_000653"
     CDS             complement(8412..8723)
                     /gene="rplU"
                     /locus_tag="PXC99_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015960603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HDL5417134.1"
                     /translation="MYAVFQSGGKQHRVSEGQVVRLEKLELATGEKVEFDSVLMVVNG
                     EDVKIGAPVVAGAKVVAEVVAQGRGEKVKIVKFRRRKHSRKQQGHRQWFTEVKITGIQ
                     A"
     gene            9001..9999
                     /gene="ispB"
                     /locus_tag="PXC99_000654"
     CDS             9001..9999
                     /gene="ispB"
                     /locus_tag="PXC99_000654"
                     /EC_number="2.5.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl diphosphate synthase"
                     /protein_id="HDL5417135.1"
                     /translation="MAVQLFSLEQIQALANEDMQAVNAEILAQLNSEVLLINQLGHYI
                     IAGGGKRIRPLIAVLAARALGYRGKKHITAAAFIEFVHTATLLHDDVVDESDMRRGRP
                     TANAHFGNAASVLVGDFIYTRSFQMMTDLDSLRVLKVMSAATNALAEGEVQQLMNVND
                     PNTTEANYMRVIYNKTARLFEAATQCVAIAADASEEIETALKNYGCYLGTAFQLIDDI
                     LDYSAQSESLGKNVGDDFVEGKPTLPLLHAMHAADKAGKTTQAELIRNAIENGGELEQ
                     IPQVLAIMQEHQSLDYAMQKAREEAQKAVDSLGVLPESEYKQALVSLAYLSVDRSY"
     gene            10102..10848
                     /locus_tag="PXC99_000655"
     CDS             10102..10848
                     /locus_tag="PXC99_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HDL5417136.1"
                     /translation="MTEQNQRPQEHIESVRARRRAQNQKKGPNAPFVREKLTLPNGHN
                     KLLLHSCCAPCSGEVMEAIHASGIEFTIYFYNPNIHPLKEYLIRKEENIRFAEKWGIP
                     FIDLDDDYENDRKEWFKKAKGMEWEPERGIRCTMCFDMRFEKAAEYAHNNGFPVFTSC
                     LGISRWKDMNQINDCGHRAAAKFDDVVYWDYNWRKGGGSQRMIEISKRERFYQQEYCG
                     CVYSLRDSNKWRLETGRQRIEIGKLYYSPD"
     gene            11265..12200
                     /gene="fabD"
                     /locus_tag="PXC99_000656"
     CDS             11265..12200
                     /gene="fabD"
                     /locus_tag="PXC99_000656"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HDL5417137.1"
                     /translation="MSKFAMVFPGQGSQAVGMLADLAPQYPIVEETFKQASDVLGYDL
                     WDLVQNGTAEELGQTHRTQPALLASSVALFRIWQQKFPEQKPAVMAGHSLGEYSALVC
                     AGVLDFQDAIKLVELRGRAMQEAVPAGSGAMFAIIGLDNESIIKACEQAASETGEIVS
                     AVNFNSPGQVVIAGTKAAAEKAGELCKAAGAKRALPLAVSVPSHCALMKPAAEKLAEA
                     LQNIELNQPLVPVINNVDVAVETDADTIRNALVRQLYSPVRWTETVEKMAQDGITTLY
                     EIGPNKVLTGLAGRIVKELSAKAVNDVASFEAVEA"
     gene            12217..12681
                     /locus_tag="PXC99_000657"
     CDS             12217..12681
                     /locus_tag="PXC99_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417138.1"
                     /translation="MSKETLFMLISALIALVILPLAYTVGIAKETLGGNMGMLSIAAG
                     CSFLAYFLSLNPKIRHAFIGGSAITAAAIQAWVLYGVLLSENDPKSAVVLFQIYLFSS
                     LGPLFFSAIWAFTRPRWIYPKQGSAVKYALFGGLTTVINYLITLFIFYILTL"
     gene            12702..13424
                     /gene="fabG"
                     /locus_tag="PXC99_000658"
     CDS             12702..13424
                     /gene="fabG"
                     /locus_tag="PXC99_000658"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HDL5417139.1"
                     /translation="MSKIALVTGATRGIGKAIAEELVAKGYIVVGTATSEKGAESISA
                     YLGENGKGLVLNVADAESIESVLKQIKETFGDVDVLVNNAGITRDGLLMRMKDEDWFD
                     IIQTNLTSVYRLSKAVLRPMMKKGGRIITIGSVVGSMGNPGQTNYCAAKAGLVGFSKS
                     LAKEVASRGITVNVVAPGFIATDMTDELTEDQKNAILSQIPAGELGSPQDIAKAVAFL
                     ASDDARYINGETIHVNGGLYMS"
     gene            13543..14841
                     /gene="brnQ"
                     /locus_tag="PXC99_000659"
     CDS             13543..14841
                     /gene="brnQ"
                     /locus_tag="PXC99_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transport system II
                     carrier protein"
                     /protein_id="HDL5417140.1"
                     /translation="MTRNTLVVGFLLFAIFFGAGNLIFPPKLGYESSTEFFSAISGFV
                     LTGVGLPLLGIIVSAFYNGGYKSALDKIHPWFSLAFLTSIYLAIGPFFAGPRTAATAY
                     EMAIMPFLGDSSQVSMLIFTLIYFAFTLWLALNPNKMVDRIGAILTPILLITIIGLVI
                     RAGFILDTDPQITTPNTNEQSYFFKGMVDGYLTMDALASLAYSVIVLNAIRGKGVSQA
                     ALQRQTVSAGLVAAVALAVIYISLGWIGNNMPISANTLSMLSERKLDLGTYILNTVTT
                     QAFGELGRSVLGVIVSLACLTTAVGLAVSVSEYFNEIFPKISYKVYAILFTVISFTVA
                     NQGLKEVISKSIPVLLVLYPIAMTVILMLLINLVIKLPLSAQRLSLLLVTIVAIASVA
                     GVGFTENLPLKSYSMEWLPFAIIGAIIGAIIHPLTGRKHK"
     gene            14887..15711
                     /gene="mutM"
                     /locus_tag="PXC99_000660"
     CDS             14887..15711
                     /gene="mutM"
                     /locus_tag="PXC99_000660"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HDL5417141.1"
                     /translation="MPELPEVETSVRGVSPYLVGQTIEQIIVRQPKLRWTVSPELSQM
                     AGAKITAVERRAKYLIIRTDKGDILVHLGMSGSLGILQERQQKEIGKHDHVDLITQNG
                     TILRYNDPRKFGCWLWAEKAEDHELLRKLGPEPLSNDFTADYLFAKSRKKTTACKTFI
                     MTNEVVVGVGNIYACESLFMAGIHPELAAQNLTKKQCERLVKTIKEVLTKAIIQGGTT
                     LKDFIQPDGKPGYFAQVLQVYGRKGETCNDCGKPIETKVIGQRNTYFCPKCQRLPK"
     gene            complement(15794..16228)
                     /gene="dtd"
                     /locus_tag="PXC99_000661"
     CDS             complement(15794..16228)
                     /gene="dtd"
                     /locus_tag="PXC99_000661"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HDL5417142.1"
                     /translation="MIGLIQRVKFAKVEVEGQVVGEIASGLLVLLGVEKDDDEAKADK
                     LLEKVLNYRVFSDSEGKMNLNVQQAGGSLLVVSQFTLAADTNKGLRPSFSKGASPVDA
                     ERLYAYFHQQAATKIHTQTGQFAADMQVSLQNDGPVTFWLQV"
     gene            complement(16203..17048)
                     /locus_tag="PXC99_000662"
     CDS             complement(16203..17048)
                     /locus_tag="PXC99_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor BrkB family protein"
                     /protein_id="HDL5417143.1"
                     /translation="MLNRLWRFIKLFAKRYNENNIAISAGYLTYSTMLAIVPFIVVLF
                     SIFTFFPIFHEANEQLKAFIYDNFAPSASEMVSEYIELFVSNAKQMGLVSFIGLFVVT
                     IMLIKSIDEALNTIWHDNRQRPMWFSFLLYFLILLFGPLLAGASIAISTYVMSLSIFN
                     GNGALSLGQHLLELMPFLLIWLLFTLVYKFIPIRKVKFQHAAIGALMAAIFFTLGKKA
                     FIWYITAFPSYQAIYGALAVLPIMLLWIQLSWQVVLLGGQFAAVLDEMETDKGSINDR
                     LNSAG"
     gene            complement(17050..18288)
                     /gene="proA"
                     /locus_tag="PXC99_000663"
     CDS             complement(17050..18288)
                     /gene="proA"
                     /locus_tag="PXC99_000663"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HDL5417144.1"
                     /translation="MQMIELAQQAKQASFELAQFGNLQKNQALLTIADSLEQRAEEIL
                     YANAKDIEFAQAQGISLAIIDRLLLNEDRLKDIANDVRNVAKLADPVGQVMDGGVLDS
                     GLKIERQRVPLGVILTIYEARPNVTIDVASLCLKTGNAVILRGGKETKFTNAVLVDVV
                     QDALEKAGLPKLAVQAVTDPDRALLLELLKLDRYIDMVIPRGGAGLHQFCKENSTIPV
                     IVGGIGVCHLFVEKTADQEKSLEVIANAKTQRPSTCNTLETLLVEKAIAVEFLPKLVA
                     KMQQLGVTIHSNDLQKIEGIEPLDQAKLSQEWLSLDLNVVVVNDLQQAVEHIRHYGSQ
                     HSEGILTSDYQLARQFVQQVDAAAVYINASTRFTDGGEFGLGAEVAVSTQKLHARGPM
                     GLEALTTYKWVCEGDYLVRG"
     gene            18572..20455
                     /gene="mutL"
                     /locus_tag="PXC99_000664"
     CDS             18572..20455
                     /gene="mutL"
                     /locus_tag="PXC99_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HDL5417145.1"
                     /translation="MINTTPKQLIHILPPQLANQIAAGEVVERPASVVKELVENSLDA
                     GANTIQIDIEKGGSQLIRIRDNGCGISKQDLPLALARHATSKISSLEDLEAILSLGFR
                     GEALASISSVSRLTLTSRTAEQTEAWQAYAQGREMAVEIQPASHPIGTTIEVANLFFN
                     TPARRKFLRTDKTEFAHIDEVVRRIALAKPNISFSLSHNGKIVRQYRKVQDNSVEQQQ
                     KRVAAICGDEFIQHSTYIDRQHGDLHLHGWVGSPALARLQNDLCYSYVNGRMMRDKTI
                     NHAIRQAYGDSIASGYYPAFVIFLDLDPTMVDVNVHPAKHEVRFHQGRLVHDFILQGV
                     LNSLQQTQPTLELRNEVNEPLPSYVQDTNRQAAGQNIFVSQTAPQAAEFTQKNASRSS
                     YTPKFERSNSVSSSAQKWYKELVGGDLHQTTPTIKTQSTLVEPKTEPQTEHKTEAVSQ
                     KITQIAPLASHHSQALAIVKNQAVLIKEEENFYLLPLATLAELKLKLQLEKGQSQALL
                     IPLNLSLDQQQTERWQQTKEELTKLGFSISEKQWQAQTRLTVLSVPQAVREQNLQQLL
                     FALFNQTQAVNLAEFFAKKCEKPTACTLSDVIALLSEIELYANGKKELEGIRKEVDFS
                     KFL"
     gene            complement(20474..20743)
                     /locus_tag="PXC99_000665"
     CDS             complement(20474..20743)
                     /locus_tag="PXC99_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin, RelE/StbE family"
                     /protein_id="HDL5417146.1"
                     /translation="MREIEYSNAFKRDYKKCAVESLSSSLIEALYFLINDKPLPEKYC
                     DHALTGEWKGFRDCHIQPDLVLIYRKVEDDKLELLRIGSHSHLFG"
     gene            complement(20730..20996)
                     /locus_tag="PXC99_000666"
     CDS             complement(20730..20996)
                     /locus_tag="PXC99_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="HDL5417147.1"
                     /translation="MANSALVSVRISPEIKEQASEVLAGIGLTVSDVMRMTLAKIATE
                     KRFQFDYQPNFETAEVLRAVKNGEEKLHSANSIADLMEQLNARD"
     gene            21436..22389
                     /gene="miaA"
                     /locus_tag="PXC99_000667"
     CDS             21436..22389
                     /gene="miaA"
                     /locus_tag="PXC99_000667"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HDL5417148.1"
                     /translation="MNKKPLALFLMGPTASGKTDLAIALRQELPVEVISVDSALIYKG
                     MDIGTAKPSKEELALAPHRLIDILDPAESYSAMNFHADALREMADITSQGKIPLLVGG
                     TMLYYKALLEGLSPLPSADPAIRAEIESRAAQHGWATLHQELVKIDPIAGARINPNDS
                     QRINRALEVFYITGKTMTELTAQQGEALPYNILQFAIAPQDRAVLHQRIEQRFHKMIE
                     LGFEEEVKRLFLRKDLHINLPSIRCVGYRQMWEYLQGDISLDEAIFKGICATRQLAKR
                     QITWLRGWQGELTWLDSLAPTSSKAKMVEKIDHYLKNCDNI"
     gene            22458..22730
                     /gene="hfq"
                     /locus_tag="PXC99_000668"
     CDS             22458..22730
                     /gene="hfq"
                     /locus_tag="PXC99_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HDL5417149.1"
                     /translation="MAKGQSLQDPYLNALRRERIPVSIYLVNGIKLQGQIESFDQFVI
                     LLKNTVSQMVYKHAISTVVPARALSHNNNNQAQHAQPAAEVTEQAE"
     gene            22750..24135
                     /gene="hflX"
                     /locus_tag="PXC99_000669"
     CDS             22750..24135
                     /gene="hflX"
                     /locus_tag="PXC99_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HDL5417150.1"
                     /translation="MLNESLPNSEENSAFGFALSEASQTTEAASPTDPENQDKAILVH
                     LYLGQHKDVENLLEFKTLAESAGVEVLATLTTSRQSSHIKYYVGQGKAEGIAEAVERL
                     GATVVLVNHQLSPAQTRNLQSLCGCRVVDRTGLILDIFAQRARSHEGKLQVELAQLRH
                     LSTRLVRRVTNQDQQKGGAVGLRGPGETQLETDRRLIKVRIQQLLNRLEKVSKQRNQN
                     RKTRQKADIPTVSLVGYTNAGKSTLFNAITQAGVYAADQLFATLDPTLRRIQVQDVGT
                     TILADTVGFIRFLPHDLVSAFKSTLQETTEATLLLHVIDGSDERKNENIDAVNQVLDE
                     IGALDIPTLLVFNKIDKLEGVEPHIERNADGTPVAVYLSAQENSGIELLFQAIQERLR
                     SNLVCENLLLPVTAGAIYAQFKAENCIKTEHFNEFGERIISIEINEVQWNKWVKQFPD
                     LAEYIELAKWG"
     gene            complement(24357..30428)
                     /locus_tag="PXC99_000670"
     CDS             complement(24357..30428)
                     /locus_tag="PXC99_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL5417151.1"
                     /translation="MNKIFKVIFNQTTQKMEVVSELARSQGKAASSTDKRGTIKLAAA
                     SILGGATLISGMAAFMLSATPAEAAVIIDRIEVQQKAPKKVVNGGIDIYTNTSLATDS
                     ITNPYNYFNPGSLSYADRTKLQESNNSVNKEKDSRLLYKSNTTSAIVIGHNAVALDNN
                     RKSRGKPKASGIAIGDYSYSGGGLSIAIGSFSRTASIGSVALGTSARAEGFNSFAAMR
                     QSAAIADYSTAIGSTSWANATASFAIGASATALGDRSFAIGSGTPQTVDGSYGHENRR
                     SIYDGQNNTLAFGTDAFSIGTKAKTNGNHSFAIGTNAWSGGFKLENSNISELGQVINP
                     DTAKVANNAFALGTNTRANSNDTLAFSTNASATGDGSIAFGVNSNTTGIGAIAFGNAS
                     KAWKSNAISIGWNANSHAEKVISIGSHSNASKDGAMAIGDTANSSGNNSVAIGYSANV
                     SKANATAVGTRANITHEGGTAIGFEAKSKGNYATAIAYNSTAKGKNSIAAGVNSTVSG
                     IRAAALGYNNTVSGKDTFVLGSNVTVKTKGSVILGSDSTEATATKEDTATVGTLKYSS
                     FAGDENVVDGDYVSVGNATNARQIKFVAPGKIASNSTDAINGSQLYAVADTLVKTGFN
                     ITADHSGLGGGAKEDNVKLGETVKYTSTDKNVVTTVTNNTIDFGLSDNISVGGKPGKD
                     GSVGVKGADGKDGVTIKPEAIVFHGVDGVNGKDGKDGKASIKVEKGAKGLDGNDGKDG
                     ESKTRIVYEKPNGDKEEVATLNDGLKFGANDGKVHDAKLNTQVDIKGATTNTDWAKFD
                     AGKNIMTQVVGNTITVALAKDLAGLDSATFGTQGDSTVINKDGVTIAKKDPNDATKSN
                     VTLTEDGLSNGGNQITNVDSGLKGKDGQPVKLTEAAGDVLNNAVNVGDLKNTVTETVT
                     EVTTDAFGLKDENNKEFKQNLGTTAKIIGDGNVKTNVVEKDGGHALEVSLVNNITVGK
                     DGEPGKVGIAGKDGKDAIALDGKDGAITVGRPGKDGIDGTIGVNGKDGSAVVLNGKDG
                     SIGLNGTNGKDGLTIKGTEGKPGLVGKDGLPGKDGVTRIQYQPTDGNGDPIGEPEQVA
                     TLNDGLHFKGDDATLVSKKLNETLEIIGGADKDKLTANNIGVNSKDGKLSVQLAKDLK
                     DLNSATFKPQDGENGQEGKGPTTVVNNNGVTITPKDGTDGKAVKLTEDGLDNGGNQIV
                     NVKSGIDGLAGKDGINGKDGKPITSVNDLTDDQLKEVGTNAANINDVVNASNDIIEKG
                     FSIAADNGETDHVKLGETVKYTSKDKNIITTVSDNVIDFTLNNDFTIGGPGKDGSIGV
                     KGADGTVGVTLNGKDGSIGLTGPKGADGKDGASATISVKDGAKGLDGNDGKDGESKTR
                     IVYEKPDGTTEEVATLNDGLRFVGDDGKEIVKKLNETLKISGGDTDLTNLSDNNIGVV
                     NNNGALTVKLAKDIDLTKDGSVTIGDTTVNNDGLTIKDGPSVTKAGINAGDKKIINVQ
                     DGEISATSKDAVNGSQLYQVQEVANAGWNLTANGKDKGNVKPGATVDLNNKDGNIIIT
                     KEGNNVTFGLKNNLTIGGKDGKDGQIGIAGKDGKDGVTIKGDGTITAGRDGKDGVDGS
                     IGATGKDGASVVLNGKDGSIGLTGPKGADGKDGASANIAVKDGAEGVDGTNGKDGLPG
                     ENGKTRIVYETKDKDGKTVTEQVATLNDGLIFSGNNEDVKNRQKLNTEVKVKGEGVDK
                     TASENFKSASGNINVKANGTDTLEVQLAKAIDLTEDGSVTTGDTTVNNNGLTIKDGPS
                     VTKGGIDAKGTKITNVKDGDVTATSKDVVSGSQLYNAMQNTGWYLTVDGNVAETSEKG
                     AQRVNNNGKVAVSGGKNIVVSRKGSTVEVATSSNLEFDSVKVGGTTISSTVAKDGVNE
                     LNIAGSKNAQTRITNVAPGVKGTDAVNVNQLKGAENRLNNRISNVDKDLRAGIAGALA
                     AGNLYHVTQPGKSMVSAGVGAYRGQGAIAVGYSRLSDNGKVGIKFSVNSNSRGDTGAA
                     ASVGYQW"
BASE COUNT         8954 a         6814 c         5990 g         8864 t
ORIGIN      
        1 atggcaatgt caaatatcgg tttagataaa gaaatcgcaa aaaaattagc agatgagtta
       61 aatggtttat tagctactta ccaagtgttt tacactaatg tacgtggcta ccattggaat
      121 gtacgtggtg tgaacttctt tgaattacat gcaaaatttg aagaaatcta cgatgattta
      181 gtgacaaaag tagatgaaat tgcagaacgt attttaacct taggtcacac acctcaaaat
      241 gcgttcagcc aatatttaac caagtcacaa attcaagaac atattggtgt ttcagctgca
      301 caagaatgtt tacgtggtac tttaaatggt ttcaaaacat tactgggaca acaacgtgaa
      361 attcttgctc tagcaaatga tgcaaacgat gaaggtactg cttctcaaat gagtgattac
      421 atcaaagaac aagaaaaatt agtatggatg ttcactgcag cttgtgctga atgttcagac
      481 tacgcacaag gttgttcttg taactaagtt gcaataatat aattaacccc cgataatgaa
      541 agattatcgg gggttacttt ttcagatagc tatgtcgcaa ggatttcaat ttaaacagtt
      601 ttttattcgg cacgacagat gtgcaatgaa agtcaataca gatggtattc tattgggagc
      661 gattgctcac ataaaagatt gtcagaatat tttagatctg ggtataggtt ctggtttagt
      721 agcacttatg cttgctcaga gaacagatga ttgttgtcac attactgcgt tggaacttga
      781 accaaatgcc taccaacaag cggtcgaaaa tgcccaaaat tctgcatggg caaatcggat
      841 ttccgttttg caaggtgatg tgatgcagca ggcatttgaa cagaaatttg acttgattgt
      901 tagtaaccca ccttattttg cagattcact tgcagctcga accacagaga gagatttagc
      961 tcgctcaatt agccattaca gccacttgaa ttggctggca aaagcaaaac catggttagc
     1021 agagaacggg aaaattacac tgattttacc tatagcagct gcagaaaaat tagttgacca
     1081 aagtgaacaa attggattgt attgtgttga acaatggtta atttttacca agagcggcaa
     1141 attggctaaa cgcagtatag tgagttttag tttaaacaag caaaagcgtg aacataaaga
     1201 gctgatcatc tatgatctag ataattgtta cactactgag tttaaaagac ttacccaaga
     1261 tttttatttg aatttttaat ttactccccg ggttagtgtt ttccacaaat cttcttcagc
     1321 tacgatgatc tagccttaag ctaaaaagca gattaccacc caagataatc cgctttttag
     1381 acttagctat tatgccaaac ttgctaccat taccgcttta atagtgtgca ttcgattttc
     1441 tgcttgctcg aatgccacat tcattggcga ttcaaacacc tcttcggtta cttcaatgcc
     1501 gtttgccagt gccggatatt tttcggcgat ctctttaccg actttagttt cactgttgtg
     1561 gaacgccggt aagcagtgca taaatttcac tttcgggttg tcggttgctt gcattaattc
     1621 aggcgttact cggtaaggca ttaataaatc tatacgttca gtccagctct ctagcggttc
     1681 acccattgaa acccaaacat cagtatgcac aaaatcgaca cctttaattg cagtctcaat
     1741 atcttcggtt accgtcattc ttgcccccga ttcagctgca aatttttcac acattttcac
     1801 gaatgcatct tccggtaata aggctttcgg ggcacaaatt cgcacgtcca tccccaattt
     1861 cgccccaatc aacaggagtg aattacccat attattgcga gcatcgccga tatagacata
     1921 actgatttgg ctaagcggtt tttcgcaatt ttcgatcatc gttagcacgt cagccaacat
     1981 ttgggttggg tggaattcat cggttaagcc gttaaacacc ggcacgccgg cataatcggc
     2041 aagctcttgt actaccgatt gtttaaagcc gcgatattga atcgcatcat acattctgcc
     2101 tagcactcgg gcggtatctt tcattgattc tttatgcccg atttgcgagg agttcgggtc
     2161 aatataggta acgtgagccc cttgatcgta agctgctact tcaaaggcac aacgagtacg
     2221 ggtcgaggtt ttctcaaaaa ttaaggcaat atttttgccc tttaattttt gctgctcagt
     2281 gccggcatat ttcgcccgtt ttaaatctct tgctaaatcc aacaaaaagc gaatttcacg
     2341 ctcagtgtgg tttactaaac tgagtaaatg tctgtttttt aagttaaatg ccattttgtt
     2401 tctccctgta aacattaaaa tttattttat gcaaaataat tgcataaaaa ttcacttata
     2461 gcaaacagaa tttgcttacc ctcattcggg taaataaaac tcgcctttgc cgactaaaat
     2521 aacctctccg ccaacaaaaa tcttcccgtt ttgatcgact tttaataaca ggcgattcgg
     2581 ccgttgaatt tcatcacctt gtgagatctg aagctggatt ggtattttgc cttgtgcaat
     2641 gtgccaaccg cctaaatttg ccgctgccga accggtgccg gggtcttcga caatcgaacc
     2701 ttgcgattga aaaaacagtc gcactttcgc ctcatttccc tcacgacacc aaacatatac
     2761 actgtctttc aaaaatgctt tttcagccag atttgcattt attttgcact tttcgaccgc
     2821 ttgttgagaa gctaactcaa ccaataactg ctccacgccg gtgtttacat aacaaggctc
     2881 ggacgcaata tccgcaacat tcagccccaa tattgaggca cattctgcac ggcttagcgg
     2941 tgtgttttcc aggttcacac cattggttaa agcaaaagta gtcacattat gttgatgttg
     3001 aatcgctacc aatccggcat tagtttgcaa gcgataggtt gttggaaaat caaaggcgga
     3061 atgcaacaca aaagccgctc caacagttgg gtggccggcg aacggcattt cataatcagg
     3121 cgtaaaaatt ttgagttttt tgaccgcttg tgaatcggtg gaagattgaa taaataccac
     3181 ttcagaaagg ttaaattggc gagcaataag ttgcatttgt aagtcggtta atccgtccgc
     3241 ttcataaaat actgcaagcg ggttgccgcc aaaatggctt gttgcaaaca cattcaccag
     3301 caaataagga tagctctgca tttatcactc cttacataaa cttaaagcca cattgggcga
     3361 aaattctacc attttggtgg cgaatcgtaa aattggaaaa tttatcggta tccctcttta
     3421 gagttaacta tttttgattt atctcaaagt tttaaaaaaa agattaggtc atacttcttt
     3481 ctagtgatta ttttttaatt tgaggttctt atgctttatg cagaattttt acttttatta
     3541 gcctttttat atgcaggtag ccgttacggt ggcatcggtt taggtgtggt ttccggcatc
     3601 ggcttatttg ttgaagtgtt cttcttagga atgccgcttt ccgctccgcc aattagcgtg
     3661 atgctcgtga ttttggctgt agttacttgt gcctccattc tagaagccgc tggcggtttg
     3721 aaatttatgt tgcaagttgc cgaacgcatt ttgcgtagca acccaaaacg tattaccttt
     3781 cttggcccac ttgtcactta tctgatgacc ttaatgctcg gcacagggca ttcggtttac
     3841 tctattatgc cgattatcgg tgatattgcc ttaaaaaata aaattcgccc ggaacgcccg
     3901 atggcagcag cctctgttgc ttcacaatta ggtattaccg gtagcccact ttctgctgca
     3961 gttgcctatt acttaaccga aatcgttaaa ttaccgggct ttgaaggggt gactttattg
     4021 aatgtagtcg gcgtaaccat caccgcaacc ttctgtggtg tgattgcgat gtcattatat
     4081 agcttacgtc gtggtaaaga gttggaagac gatcctgagt atcaacgccg tatgcaagac
     4141 cctgagctac gcaaacaaat cgagcaaacg agtgcaacgt ctttagacga aaaactaccg
     4201 gcaagtgcga aaaactcggt ttatctgttc ctagccgcta ttgcaaccat tgtgattatt
     4261 gcaatgattc cggctattaa accaacggtt gctgctacag gaaaagttgc cggtatggat
     4321 caaatcattc aaatcgtgat gctaactttc gggggtttaa tcttaatttt aactaaaacc
     4381 gacccgaaaa aagtaccaaa cggcatcgtt ttcaaatccg gtatggtagc aaccattgcg
     4441 attttcggga ttgcttggat gagtgatact tacttcaccc atgcaatgcc agcgttcaaa
     4501 gaaggggtaa cagaaatggt tcgagcccaa ccttggacat tcgccttcgc cttgtttgcg
     4561 gtatctgtag tagtaaacag ccaagccgta accgcaaaaa tgttattacc ggtaggcatt
     4621 gcaatgggct tgcctgctcc attattagtt ggtttaatgc cggcaactta tgcttacttc
     4681 tttattccga attatccgtc tgatatcgca accgttaact ttgacgtaac cggtacaact
     4741 aaaatcggta aatattactt caaccacagc tttatggctc cgggtttagt tggcgtaatt
     4801 actgcctgta ttgtcggtat cgccgttgca aatgtgctaa tttaatttta acaaaaaaac
     4861 aagcggtcag attaagtaaa ttttttacca aatctgaccg cttgattatt tactgcaaaa
     4921 ccaattaggc tttgttaaag agttttgcat ctaacgagta ttttccgcca ccgataaaaa
     4981 tataggttaa gaataatacc gaatacacgc ctgctaattc accgccgttt aataaaggta
     5041 atagcacatt gccttgagct ccgtgagcaa taaagaacgc gtatgccatc atacctgaaa
     5101 ggataaacgc tgtttggcgg gtaaatagac ctaaaataaa gaaaattccg cccacaattt
     5161 ccaaaatacc gcctacacca taaatggagg caaggggtac actgccgttt ccgttggtca
     5221 tcgacattgg aaattcaaaa aatttcgctg tgccgtgtaa taaaaacata taaccggcaa
     5281 caacacgggt gattaaaaac gctaaaggtt gtaaatttgt taaagtagag ttcatttgct
     5341 ttccttaaaa taaattgtga tataaaggtc aattgattga ggcaggcatt ctattttaaa
     5401 aacctatact tcacaatcca gccgtcatga aatagattat ttaccattaa taaacaatta
     5461 ggctctcgct aacacccaaa cctgaatttc tactactcca gctttgagta actcggcaca
     5521 aattacattt aaggtggaac ctgtggtgag cacatcatca acaatcgcca ctcgtttata
     5581 ggcttttaac ggttgataga aaaatgcccc acgcagattt ttccgccgtt cagcagcggt
     5641 caattctctt tgtgagacgg ttgctctcac acgttgtaaa ctctgggtat ccagcggaat
     5701 ctgtaaccac ttcgataacc aatcacacaa taattcgctt tgattaaacc ctcttttcca
     5761 atgtctgtgc caaaaaagtg gtacaggcat aatcacttca ggcaagctca gaacctgttc
     5821 cctttgagct tgtttgattg ccagcagcaa ttgtcgggca agggcttgat cccaccaata
     5881 ttgctgctgg aacttaaatt gatgtaccca atgtgaaagt ggcgctcggt attcatttac
     5941 cctcactaat ttatgccact tcggttcatt tttcaaacaa tagccacaag cgtttcgaaa
     6001 ctccaccgca ctcattccac aatgacgaca ataaggggtt ggttttagca atttttggca
     6061 atggctgcaa atgccttgca cgccaatagc gagtggatga ttacaatgaa agcaacggaa
     6121 gccgaataaa ttcacatttc ctccttttat ttgcagatta tcaaatttag ccttattttt
     6181 tccggctatt tttgtgacat cgctcgaaaa aagagtaaaa tctcattatc agtaaataaa
     6241 aaggaaaccg agatgaaatc cctccaaaaa ccgatcaaaa ttgtcttttt cgatattgat
     6301 gacaccctct atgtaaaaca taaagcctat attccaaaat caattaccga gcaggtatta
     6361 cctcgtttaa aagccaaagg cattattccg gccattgcca ccggcagaaa tcacggctgt
     6421 tttcctgaag ctctcaaacc ttatttaaac cctgaaatcg gttttgagct gtttgttacc
     6481 attaacgggc aatataattt ctataaagat caaataatta gtgattattc gttaagccgt
     6541 gagcaaattg aacgtattat cgaaaaagcg aatgctttgg gtattctgta tgcctttatt
     6601 acgccaatga cgattgcagt ttccgaaacc aatccgattg tgcacgaagc ggttttaccg
     6661 atcacaccga attatttgat cgatccacac tactacgaaa aagagaaaat tgtgcaaatg
     6721 ttactgttct acaccgaaga gcagaaacaa gcggtcgaaa atagtggcat ttttgcaaat
     6781 gatttaaaag aggctcgctg gcaccccaat gcggtagata ttctgcgaaa agaaaattcg
     6841 aaagctcgtg gcattcaaga tgtattagca accttgaata ttgagattga aagtgcgatg
     6901 gcatttggcg atggtattaa cgacttggaa atgctcccga ccgtaggtgt tggtgtggca
     6961 atgggtaatg gcgtgccgga attaaaagcg gtggcagatt tcatcaccaa gccgcttgag
     7021 gaagacggca ttctatacgc tcttgaaact cttgaggtga tttaaaagca agcggttgta
     7081 agtttttctc catttacaac cgcttgtagt ttctaattac gcctaaatag cttatcgcct
     7141 gcaatcgcta aaatcgcccc actgacgacc accaacgccc caagataact gatccaattc
     7201 atatccggct tggcaaaaat atgcggataa aaatagtagc taaggttgga aaagatcatc
     7261 gtaaaaatcg gcaacatcgt ggttacaatg ctaacctttg aagtatccca atgattcaac
     7321 gcctcaccgt atgaaccgta gccaattaag gtgttcaaca gcaataaata aagcaacccc
     7381 acagaaaacc atcctcaaga ttgcctaact gtgccggtga ggcaaacggt aacatcagca
     7441 gagaacagcc gatgtaaata ataaacagca cttgctgaga gttaaatttc gctaataata
     7501 atttttgagc cacgccgtat agcacccaaa tcaagctggc tccggcactc aataacactc
     7561 cgagagcgta ggtgttgagc tgtaaaattt cagcaaattt atcgttaaaa aatgcgacaa
     7621 gccctgcaat caataacaca aatccaatct tttgaaacaa gccgaacttt tccttaaaca
     7681 ataatacgcc tagtagaatc atcgaaaatg gagctaactg ccacaatact tggttaatgg
     7741 tgggcgaaac atagtgtaga gcctctgcaa acaaaaagaa atttgccgac agaccacaca
     7801 cccctaacaa aattaaaccg agttcttttt tgctacaagc ggtcaatttg ggtaaacgtt
     7861 ttgcaaatcc tagaatcagc aatagcccta ctgatgccac aacgaaccta acccaaacta
     7921 aagtttgggc atctatcact ttcaatactt gctgggcggc aatcggtagc gttccccagg
     7981 tcattgctgc ggttaatgca agtgaaaagc caagtaaggg gcgttgtttc atcgtggaaa
     8041 ttcctttttc tattctatgt ttctatattt tagaaagatt gagatacaaa aaaaccccgc
     8101 cattggcgag gtctcttatt gattttgaaa tgattagtca gcaatgatgc ttacatattt
     8161 acggcttttc tcgcctttca cttcaaattt aactttaccg tcagcagttg caaataaagt
     8221 gtggtcttta cccataccta catttgaacc tgcgtggaat ttagtaccac gttgacgaac
     8281 gataatgcta cctgctaata cagattcacc accgaaacgt ttaacaccaa ggcgtttagc
     8341 ttcagaatca cgaccgttac gagttgaacc accagctttt ttagttgcca tcttctagat
     8401 ctcctctgaa attatgcttg aatcccagtg attttcactt ctgtgaacca ctgacgatga
     8461 ccttgttgtt tacggctgtg tttacgacga cggaacttaa cgattttaac tttctcgcca
     8521 cgaccttgtg ctacaacttc agccactact tttgcacctg ctacaaccgg tgcaccgatt
     8581 ttaacatctt caccgttaac gaccattaac actgagtcaa attcaacttt ctcaccagtt
     8641 gcaagttcaa gtttttctaa acgaactact tgaccttcac ttactcggtg ttgtttgccg
     8701 ccactttgga aaactgcgta catatttact ccgctatgtg ccaactgctt ttgcttttag
     8761 gcactaaatt aattcataaa aatagggttg caattctacg gaaaaagatt cgaaagagca
     8821 agagcgattt tgagaatttt ttgaaatttg caaaaaatgg taaaaatact accgcttgtt
     8881 tcaactgcga ctaaaaaaca atagactgct ccgattttac aacaaaatca taattctttt
     8941 ttgaacacag gctaaattaa ggtagaatct actcaatttt cgtcttactt tatggattcg
     9001 atggctgtgc aacttttttc tttagaacaa attcaagccc ttgcgaatga agatatgcaa
     9061 gcggtaaatg ccgaaatttt agctcaactt aattccgaag tgctactgat taaccagctc
     9121 ggacattata tcatcgcagg cggtgggaaa cgtattcgcc cgttaattgc ggtgcttgcg
     9181 gctcgtgcct tgggttatcg tggtaaaaag catatcacgg cggctgcttt tattgagttt
     9241 gtgcatactg ctacactttt gcacgatgat gtagtcgatg aatccgatat gcgtcgtggc
     9301 agaccaaccg caaacgccca ttttggcaat gcggctagtg tattggtagg ggatttcatc
     9361 tatacccgtt cgttccagat gatgacggat ttagactctc tgcgtgtgtt aaaagtgatg
     9421 tctgccgcca ccaatgcgtt ggcagaaggg gaagttcagc aattaatgaa cgtgaacgac
     9481 ccaaacacca ctgaagcgaa ctatatgcgg gtcatttaca ataaaaccgc ccgcttgttt
     9541 gaagccgcca ctcaatgcgt ggcgattgcg gctgatgctt ctgaggaaat tgaaaccgca
     9601 ttaaaaaatt acggttgcta cttaggcacg gcattccagc tgattgacga tattttagac
     9661 tactccgctc aaagcgaaag tttaggcaaa aacgtaggcg atgactttgt ggaaggtaag
     9721 ccaaccttgc cattgctcca cgcaatgcac gctgccgaca aagcaggcaa aactactcaa
     9781 gcagagctga ttcgcaatgc tatcgaaaac ggcggcgaat tggaacaaat tccacaagta
     9841 ttggcaatta tgcaagaaca tcaatctctg gattatgcca tgcaaaaagc ccgtgaagaa
     9901 gcccaaaaag cggtggattc attaggggtt ttaccggaaa gcgagtacaa acaagccttg
     9961 gtttcattgg cgtatttatc ggtggatcgc tcttattaat ttgcaaaaaa tcatataaat
    10021 ttaaccactt gtaggggcaa atgatatttg ccccataacc tataattctt ttgggcaaat
    10081 gttatttgcc ccaacataac aatgactgaa caaaaccaac gaccccaaga acatattgaa
    10141 agcgtacgag cgagacgccg tgctcaaaat cagaaaaaag gcccgaatgc cccgtttgtg
    10201 cgtgagaaat taacgctgcc aaacggacat aacaaattac tgctgcactc ttgctgtgcc
    10261 ccttgctcgg gtgaggtaat ggaggctatt cacgcctccg gcattgagtt tacgatctat
    10321 ttttataacc cgaacattca cccgctgaaa gagtatttga tccgcaagga agagaatatt
    10381 cgctttgccg aaaagtgggg tattccgttt atcgatttag acgatgacta cgaaaacgac
    10441 cgcaaagagt ggttcaaaaa agccaaagga atggaatggg agccggaacg aggcattcgt
    10501 tgcacaatgt gctttgatat gcggtttgaa aaagcagcgg aatacgctca caacaacggt
    10561 ttccctgtat ttaccagttg cttaggcatt tcccgatgga aagatatgaa ccaaatcaac
    10621 gactgtggtc accgtgcagc agccaaattt gatgacgtgg tttactggga ctacaactgg
    10681 cgtaaaggcg gcggctcaca acgaatgatc gaaatcagca aacgtgaacg tttctaccag
    10741 caagaatact gcggttgcgt ctattcgtta agagatagca acaaatggcg gttggaaaca
    10801 gggcgtcagc ggattgaaat cggtaagctc tattactcac ccgattaaat gttacttttc
    10861 tttgcttcgc caaagaaaag taaccaaaag aaaggcgacc cgaacttcgc ttagttacga
    10921 tttccttaac ggaaaatttg taaactcgct acgctcaaac agtacaaatt ttcctagaaa
    10981 tcgcaagtcg ctcagacggg acaagcggta cattattcaa aattttttac aaaatatagt
    11041 gatgtactct tcccttctga accgcccgaa cgtgtttgaa ttggtaggaa aatttactct
    11101 gagcgaagcg aatgtaaatt ttccgtgaaa ccaattcaaa ctaagtgagg ataagcggtg
    11161 aagtaggggt gtttctttgg ttactttctt tgcacatgca aagaaagtaa cgaaaactca
    11221 gatatagatt tcaacttaaa aatttacaga aggaataata acaaatgtca aaattcgcta
    11281 tggttttccc cggtcaaggc tcacaagcgg ttggaatgct tgccgacctt gcgccacaat
    11341 atccaatcgt ggaagaaacc ttcaaacaag caagtgatgt gcttggctat gacttatggg
    11401 atttagtgca aaacggtact gccgaagagt tagggcaaac ccaccgcact caacctgcgt
    11461 tgcttgcctc aagcgtggca cttttccgca tttggcaaca aaaattccct gagcaaaaac
    11521 cagccgtgat ggcagggcat agtttgggtg aatactcagc gttggtgtgt gccggtgtgt
    11581 tggatttcca agatgcgatt aaattggtcg agttgcgtgg tcgtgcaatg caagaagccg
    11641 tgccggcagg cagcggtgcg atgtttgcga ttatcggttt agataacgaa agcattatta
    11701 aagcgtgcga gcaagcagca agcgagaccg gtgaaattgt ctctgcggta aactttaaca
    11761 gcccggggca agttgtgatt gccggcacaa aagcagcggc agaaaaagca ggagaattgt
    11821 gtaaagccgc aggtgcaaaa cgtgcgttac cattagcggt gagcgtacct tcacactgtg
    11881 ctttaatgaa accggcggca gaaaaattag ccgaagcctt gcaaaatatt gagctaaatc
    11941 aaccgcttgt ccctgttatc aacaacgtgg atgtggcagt ggaaacagat gccgatacca
    12001 ttcgtaatgc acttgttcgc caactttaca gccctgttcg ttggacggaa accgttgaaa
    12061 aaatggcaca agatggcatc actactttat atgaaatcgg gccaaacaaa gtcctaaccg
    12121 gtttagcagg tcgtattgta aaagaattat cagccaaagc ggtaaatgat gttgccagct
    12181 ttgaggcggt tgaggcttaa ttttcgggag cgtaaaatga gtaaagaaac cctatttatg
    12241 ctaataagtg cattgattgc cttagtgatt ttacctttag cttatactgt tggtatcgct
    12301 aaagaaacat taggcggaaa tatgggaatg ttatccattg ctgccggttg ctcattttta
    12361 gcctattttt taagtctaaa cccgaaaatt cgccacgcct ttatcggagg ttcagctatt
    12421 acagctgctg ctattcaagc ttgggtatta tatggtgtgc tattaagcga aaatgacccc
    12481 aaaagtgcgg tcgttttatt tcaaatttat ctgtttagta gtttagggcc actgtttttt
    12541 tcagctattt gggcatttac tcgcccacgt tggatttacc ctaaacaagg tagtgcggtg
    12601 aaatatgcct tatttggtgg cttaacgacc gtgataaact acttgattac cctttttatt
    12661 ttttatattc tgacgttata acgtcatact aaggagaatt tatgagcaaa atcgcattag
    12721 ttacaggggc aacccgtgga atcggcaaag cgattgccga agaattggta gcaaaaggct
    12781 acatcgtagt cggcaccgca acctctgaaa aaggggcgga atctatttca gcttatttag
    12841 gcgagaacgg caaaggctta gtgctaaatg ttgccgatgc agagtcgatt gagagcgtat
    12901 taaagcagat caaagagacc tttggcgatg tggacgtgtt agtcaataac gccggcatta
    12961 cccgtgacgg cttattaatg cgtatgaaag atgaggattg gttcgacatc attcaaacta
    13021 acttaacttc ggtttatcgt ttatccaaag cggtattacg cccgatgatg aaaaaaggcg
    13081 gacgcattat cacgatcggt tctgtggtcg gctcaatggg caacccgggg caaaccaact
    13141 actgtgctgc caaagcaggc ttagttggtt tttctaaatc tttagcgaaa gaagtagcaa
    13201 gccgcggcat tacggtaaac gtggttgctc cgggctttat cgccactgat atgaccgatg
    13261 agctaaccga agatcagaaa aatgcgattt taagccaaat tcctgccggt gaactcggtt
    13321 ctccacaaga tattgccaaa gcagtcgctt tcttagccag cgatgatgcc cgttatatca
    13381 acggtgaaac cattcacgtt aatggcggtt tatatatgag ctaatccgct acaagcggtc
    13441 ttttttcaac cgagctttgt aaattcagag ttcggttttg ttatttgtta ttttgtgtta
    13501 tcacctgctt tataggtata ggtgaaaaag tgtgaatatg ttatgactag aaatacatta
    13561 gtagtaggct ttttattgtt tgctattttc tttggtgccg gcaatctgat tttcccacca
    13621 aaattaggtt atgaaagtag tacagaattt ttctcagcca tttcaggctt tgttttaact
    13681 ggagtagggc ttcctctact cggtattatc gtcagtgcat tttataatgg aggctataaa
    13741 tctgcattag acaaaatcca cccttggttt tctttagcat tcctaacttc tatctattta
    13801 gcgatcggtc cattctttgc cggtccgcgc acggcagcaa ctgcctatga aatggcgata
    13861 atgccgtttt taggggattc cagccaagtg tcaatgttaa tttttacctt aatttacttt
    13921 gcctttaccc tatggttagc gctaaatcca aataaaatgg ttgatcgcat tggtgcaatt
    13981 cttaccccga tcttgcttat aaccatcatt ggattagtta ttcgagccgg ctttatttta
    14041 gataccgatc cacaaatcac tacgcctaat acgaatgaac aatcttactt ttttaaaggt
    14101 atggttgatg gctatctaac tatggatgca cttgcttcgt tagcctattc ggtaattgta
    14161 ttaaatgcta ttcgtgggaa aggggtaagc caagccgcat tacaacgcca aacagtttct
    14221 gccggcttag ttgcagcagt tgctctagct gtaatttata tttcattggg ttggattggt
    14281 aataatatgc caattagtgc aaacacactt tcgatgttat cagaaagaaa attggatcta
    14341 ggtacttaca ttcttaacac tgtgactacc caagccttcg gtgaactcgg acgtagtgtc
    14401 ttaggagtga ttgtttcact tgcctgttta accactgctg tcggtttagc cgtatcagtc
    14461 agtgaatact ttaatgaaat tttcccgaaa atttcatata aagtttatgc tatcttattt
    14521 actgtgatta gttttactgt tgctaaccaa ggattaaaag aagttattag caaatccatt
    14581 ccggtattat tagttctcta cccaatagca atgactgtca ttttaatgtt gctgattaat
    14641 ttagtgatta aacttccgtt gtctgcacaa cgtctatcac tcctattagt gacaattgta
    14701 gcgatagctt cagttgccgg tgtcgggttt accgaaaact tgcctctaaa atcctactcg
    14761 atggaatggc tacctttcgc tatcattgga gctattattg gagcaattat ccacccgctt
    14821 accggtcgaa agcataaata aagtaaaggc agtgagcatt cactgcctct tttttaggag
    14881 agaataatgc ctgaattacc cgaagttgaa accagcgttc gtggtgtatc gccctatttg
    14941 gttgggcaaa ctattgaaca aatcatcgtt cgtcagccaa agttacgttg gacggtgagt
    15001 cctgaattaa gccaaatggc aggggcaaaa attaccgcag tagaaagacg tgccaaatat
    15061 ctgattatcc gcaccgacaa aggcgatatt ttggtgcatc tgggaatgtc cggctcgctc
    15121 gggattttgc aagaacgtca acaaaaagaa attggcaaac acgaccacgt cgatcttatt
    15181 acccaaaacg gcacaatttt acgctataac gaccctcgca aattcggctg ttggctatgg
    15241 gcagaaaaag cagaagatca cgaactgttg cgtaaactcg ggcctgaacc gctttcaaac
    15301 gatttcacag cagattactt atttgcaaaa agccgcaaaa aaacgaccgc ttgtaaaacc
    15361 tttattatga ccaatgaagt ggttgttggg gtggggaata tctatgcgtg cgaaagttta
    15421 tttatggcag gcattcaccc tgagcttgca gcacaaaacc tgactaaaaa acagtgcgaa
    15481 cgtttagtaa aaaccatcaa agaagtgctg actaaagcga ttattcaagg cggcacaaca
    15541 ctgaaagatt ttatccaacc tgacggcaaa ccaggctatt ttgctcaagt gttgcaagtg
    15601 tatggaagaa aaggggaaac ctgtaatgac tgcggaaagc cgattgaaac taaagtaatc
    15661 gggcaacgta atacctattt ttgcccgaag tgtcagagat tgccgaagta atctaataat
    15721 aaactctctc cccctgaggg agagagacag cttgttgaaa cgttaagtga aacaagcaga
    15781 gagagggtaa aacctaaacc tgcaaccaaa aggtaacagg cccgtcattt tgtaggctga
    15841 cttgcatatc ggctgcaaat tgcccggttt gggtatgaat cttagtggcg gcttgttgat
    15901 gaaagtaggc atacaaacgt tcggcatcaa ccgggcttgc tccttttgag aaactaggac
    15961 gcaagccttt attggtatcc gccgcaaggg taaactgtga aaccactaac aaactgccac
    16021 ctgcttgctg tacgtttaag ttcattttcc cctcgctatc cgaaaacacc cgataattca
    16081 gcactttttc cagtagctta tctgctttcg cttcatcatc gtctttttcc acaccgagca
    16141 gcaccaacaa accgcttgca atttcgccaa cgacttgccc ttcaacctcc acttttgcga
    16201 atttaacccg ctgaattaag cctatcatta atgctcccct tgtctgtttc catttcgtct
    16261 aaaaccgccg caaattgccc gccaagtaat accacctgcc aacttaactg aatccataac
    16321 agcataatcg gtaacaccgc taatgctcca taaattgcct gataagacgg gaaggcagta
    16381 atataccaaa taaaggcttt cttccctaaa gtaaagaaaa tcgctgccat taatgccccg
    16441 atagcagcgt gttgaaattt tacctttcta attggaataa atttatacac taaggtaaaa
    16501 agtagccaaa ttagcaaaaa cggcatcaat tctaataaat gctgcccgag cgataacgct
    16561 ccatttccat taaaaataga aagcgacatt acataggtgc taatcgcaat gctagcaccg
    16621 gcaagcagcg ggccaaacag caaaatgaga aagtaaagca agaaagagaa ccacatcgga
    16681 cgctgacgat tatcgtgcca aatggtattc aatgcctcat caatactctt aatcagcata
    16741 atagtaacca caaataagcc gataaaactt accagcccca tttgtttggc attactgaca
    16801 aacaactcaa tgtattccga caccatctcg ctcgcactcg gggcaaagtt gtcataaatg
    16861 aacgctttta actgctcgtt tgcttcgtgg aaaatcggaa aaaaggtaaa aatggaaaac
    16921 agcacgacaa taaacggcac tatcgccagc attgtgctat aagtgagata accggctgaa
    16981 atcgcaatgt tattttcatt gtaacgcttg gcaaagagct taataaatct ccacagtcga
    17041 tttaacatct taacctctca ccaaataatc gccttcacac acccatttgt aggtggttaa
    17101 ggcttctaat cccatcgggc ctcgtgcgtg taatttctgc gtgctaactg ccacttctgc
    17161 ccctaaacca aactcaccac catcggtaaa acgggtgctg gcattaatat aaaccgccgc
    17221 ggcatcaacc tgttgtacaa attgacgggc aagttgataa tcggaggtta aaatcccctc
    17281 tgaatgctgc gaaccataat ggcggatatg ctctaccgct tgttgcaggt cattcaccac
    17341 caccacgtta agatcaagcg ataaccactc ttggctcaat tttgcttgat caagcggttc
    17401 aattccttca attttttgca aatcgttact gtgaatagta acgccaagct gttgcatttt
    17461 ggcgaccaat ttcggcaaaa attccaccgc aatcgctttt tccaccaaca gcgtttccag
    17521 cgtattgcaa gtgcttgggc gttgcgtttt ggcattagcg atgacctcta gagatttctc
    17581 ctgatccgct gttttttcca caaacagatg acaaacccca atccccccca caatcaccgg
    17641 aatggtcgaa ttttctttac agaattgatg taaacctgca ccgcctcgag ggatcaccat
    17701 atcaatgtag cgatctagct tcaatagttc caataataag gctcgatccg gatccgtcac
    17761 cgcttgcact gccaatttcg gcaagccggc tttttctaac gcatcttgca ctacatcaac
    17821 caacacagca ttggtaaatt tggtctcttt accgccacgc aaaatcactg cattgccggt
    17881 ttttaggcat aatgatgcca catcaatggt cacattcggg cgagcttcgt aaatggttaa
    17941 aatcaccccg agcggcacac gctggcgttc gattttcaaa ccgctgtcta acacgccacc
    18001 gtccatcacc tgccccaccg gatccgctaa tttggcaaca tttcgcacat cgttagcaat
    18061 gtcttttagc cgatcttcat tcaataataa gcggtcaata atcgccaatg aaatcccttg
    18121 tgcttgagca aattcaatat ctttggcatt agcgtataaa atttcttctg cacgttgctc
    18181 aaggctatcg gcaatcgtga gtaaggcttg gtttttctgt aggttgccaa attgagccag
    18241 ctcaaaacta gcttgtttgg cttgctgggc aagttctatc atctgcataa attaggtctc
    18301 atttaatcaa tattctccat aatctaacac gttcttttat gtgaagaaat atgcaaaagc
    18361 caagaaaatt ggataaaatg ggggaatttt aaaacattac gcaattcccc tctccctgat
    18421 ttttctcctg aacggagaaa aatctatccc tctcctacaa ggggagaggg tagaatttaa
    18481 ctctctcccc ttgtgggaga gagaccgcct acagattcgt tcagaatctg taggcagaga
    18541 gaggggtaaa aacagataaa acttaaacaa aatgataaac actaccccta aacagctaat
    18601 ccacattctt ccgcctcaac tggcaaacca aattgctgcc ggcgaggtgg tggaacgccc
    18661 tgcgtctgtg gtaaaggagc tagtggaaaa cagtttagat gccggagcca atactattca
    18721 aatcgacatt gaaaaaggcg gctctcagct tatccgcatt cgagataacg gttgtggtat
    18781 cagcaagcaa gatttaccgc tggcacttgc tcgccacgct acgagcaaaa tcagcagctt
    18841 ggaagattta gaagccattt taagtttagg ctttcggggc gaagcattgg caagtatcag
    18901 ctcggtttca cgtttaacac tgacctctcg taccgcagag caaaccgaag catggcaagc
    18961 ctatgcacaa gggcgggaaa tggcggtgga aattcagcct gcctcacacc cgattggcac
    19021 aaccattgaa gtagcaaatc tgttttttaa cacaccggca cggcgtaaat ttctacgcac
    19081 cgataaaacc gaatttgccc atattgacga ggtggttcgc cgcattgccc ttgccaagcc
    19141 gaatatcagt ttcagcttaa gccataatgg taaaatcgtc cgccaatatc gcaaagtgca
    19201 agacaattcg gtagagcagc aacaaaaacg ggttgcagcc atttgcggtg atgagtttat
    19261 tcaacattca acttatattg acaggcaaca cggggatctg cacctacacg gctgggttgg
    19321 ctcaccggct cttgcccgtc tgcaaaacga cctttgctac agctatgtga acgggcgaat
    19381 gatgcgggat aaaaccatca atcacgccat tcgccaagcc tacggcgaca gcattgcaag
    19441 tggttactat ccggcttttg tgatcttttt ggatttagat ccgacaatgg ttgatgtaaa
    19501 cgttcacccg gctaaacacg aggtgcgctt tcatcaagga agactggtac acgactttat
    19561 tttgcaaggc gtactcaaca gcctgcaaca aacccaacct acgcttgaac tgcgaaatga
    19621 agtgaacgag ccgttaccga gctatgttca agacactaac cgccaagctg cggggcaaaa
    19681 tatttttgtg tcgcaaaccg ctccacaagc ggccgaattt acgcaaaaaa atgcaagtcg
    19741 atcaagctat acgcctaaat ttgaacgaag caacagtgtg agttcgtccg ctcaaaaatg
    19801 gtataaggaa ttggttggtg gcgatttgca ccaaacaacg ccaactatca aaacgcaaag
    19861 cacgcttgtt gagccaaaaa cagaacccca aactgaacat aaaacagaag ccgtttcgca
    19921 aaaaattacg caaattgcac cgcttgcaag ccaccattca caagccttag cgattgtaaa
    19981 aaaccaagcg gtgttaatta aagaagagga aaatttttac ctgcttccac tggcaacatt
    20041 agccgagctt aaactcaagc tacaactgga aaaagggcaa tctcaagcgt tgttgatccc
    20101 actgaatctc agtttagatc aacaacaaac cgaacgctgg caacaaacca aagaagaact
    20161 aactaagctt ggcttttcga tcagcgaaaa acagtggcaa gcccaaacac ggctcacagt
    20221 gctttccgta ccacaggctg tcagagaaca aaacctgcaa cagcttttat ttgctctgtt
    20281 caaccaaaca caagcggtca atttagccga attttttgca aaaaaatgcg aaaaacccac
    20341 cgcttgtacg ctaagtgacg tgattgctct actctcagaa attgagcttt atgccaatgg
    20401 gaaaaaagag ctggagggaa taaggaagga agtggatttt tccaagtttt tatagtctaa
    20461 agggcaatac cctttagcca aataaatgag agtggctgcc aattcgcagc agctctagct
    20521 tatcatcttc cacttttcga tagataagaa ccaaatcagg ttggatatgg caatccctaa
    20581 agcctttcca ttcgccggtt aaagcgtgat cgcagtattt ctcaggtaat ggcttgtcat
    20641 taatcagaaa atacaacgcc tcaattaatg aagaggataa agactcaacc gcacattttt
    20701 tatagtcacg tttaaaagca ttactatact caatctctcg cattgagttg ctccattaaa
    20761 tccgcaatac tatttgctga atgtagcttt tcctcgccat tcttaacagc ccttaatact
    20821 tctgctgtct caaaattagg ctgataatca aactgaaaac gtttttctgt tgcgattttc
    20881 gctaatgtca ttcgcatcac atcagagaca gtcaagccga taccggctaa cacctcactt
    20941 gcttgctctt taatttcagg gctgattctt acgcttacta atgcactatt tgccatcaaa
    21001 aactcctttt gtatatcaaa tgatatacaa aataacattt aacaaaaaat tgtgcaataa
    21061 aaaagaaatt caaagaaaag aaatgaatag ttaaaattag ctcgttacaa gaaatcattg
    21121 agttactcaa gaaatcaagg taatataaag aagtctgggc ggaacacgaa cccgccccta
    21181 gcatctagcc gcttacaaga acagatagat tagttgaaag agcgtgaaaa tttcaactgc
    21241 tgcacacaga aacccaagtg caactaaaat caatagtagt tctttcattg taagcctcct
    21301 tagtgctact aaggatgatt taggctcagg ctactgcgaa tagccctaac gagcctacca
    21361 gtagcacaat caggattgta acaaaaaagc tgtgaatttc acggcttttt ttgtatctat
    21421 atacagtata ttaatatgaa taaaaaaccc cttgcccttt ttttaatggg gccgactgcc
    21481 tccgggaaaa ccgatttagc tattgcttta cgccaagaat tgccggttga ggtaatcagt
    21541 gttgattctg ccttaattta caaaggaatg gatattggca cggcaaagcc aagcaaggaa
    21601 gagcttgccc ttgcaccgca tcgcttgatt gatattttag accctgccga gagctattcg
    21661 gcgatgaatt tccacgctga tgcgttgcgt gaaatggcag atattacctc acagggtaaa
    21721 attccgctct tggtgggtgg cacaatgctt tattacaagg cattgcttga agggttatct
    21781 cccctgccct ctgccgatcc agccattcgg gctgaaatcg aaagccgagc ggcacaacac
    21841 ggctgggcaa cattgcatca agaattagtg aaaatcgacc cgattgccgg tgcaagaatt
    21901 aacccaaatg acagccaacg gatcaaccga gcgttagaag ttttttacat taccggcaaa
    21961 acgatgaccg aactcactgc tcagcaaggt gaggctctac cttataatat cttacaattt
    22021 gcaatcgctc ctcaagatcg tgcagttcta caccaacgga ttgaacaacg ctttcacaaa
    22081 atgattgagc taggctttga agaggaggtc aagcggttat ttttacgcaa agatttgcat
    22141 attaatttgc cctcgattcg ctgtgtgggc taccgccaaa tgtgggaata tttgcaaggc
    22201 gatatttcgc tcgatgaggc gatctttaaa ggcatttgtg ccacccgcca gctggcaaaa
    22261 cggcagatta cttggctgcg tggctggcaa ggcgaactga cttggttaga tagtttagct
    22321 ccgaccagtt ctaaagcaaa aatggtggaa aagatcgatc attatttaaa gaattgtgat
    22381 aatatctaaa cgcctttggc acttatcgca ttatttggtg tcttaaaaat cacacaacta
    22441 taaaaaggaa aataacaatg gcaaaaggtc aatctttaca agatccatat ttgaatgcac
    22501 ttcgtcgtga gcgtattcct gtttcaattt atttagttaa cggcattaaa ttacaaggtc
    22561 agatcgagtc gttcgaccaa tttgtgattt tattaaaaaa cactgtaagc caaatggtgt
    22621 ataaacacgc tatttcaacg gttgttcctg cccgtgcgtt atcgcataac aataacaacc
    22681 aagcccaaca cgctcagcct gctgccgaag taactgaaca agcggaataa taacattatt
    22741 actcaaccaa tgttaaacga atcattgcca aactcagaag aaaattctgc gtttggcttt
    22801 gctttatctg aagcaagcca aactacagaa gccgcctcgc ctaccgatcc agaaaatcaa
    22861 gataaagcca ttttggtgca tctctatctc gggcaacata aagatgttga aaatttgctg
    22921 gaatttaaaa cgctggcaga atctgccggt gtcgaagtgc tggcaacgct taccaccagc
    22981 cgccaaagtt cgcatatcaa atattatgtg gggcaaggca aagcggaggg aattgccgaa
    23041 gcggtagaac gactcggggc aacagtagtg ctggtgaacc atcaacttag cccggctcag
    23101 acccgtaatt tgcaatcgtt atgcggctgc cgtgtggtgg atagaaccgg cttgattttg
    23161 gatattttcg ctcaacgggc aagatcgcac gaaggcaaac tacaagtcga gctggcacaa
    23221 cttcgccatt tatcgacccg tttggttcgc cgagttacta atcaagacca acaaaaaggc
    23281 ggagcagttg gcttgcgtgg tccaggtgaa acacagctcg aaaccgatcg ccgtttgatt
    23341 aaagtgcgaa tccaacagtt actcaaccgc ttggaaaaag tcagcaagca acgcaatcaa
    23401 aatcgaaaaa ccagacaaaa agccgatatt ccaacagtat ccttagtggg ctataccaat
    23461 gccggcaaat ctaccctgtt taatgcgatt acccaagctg gtgtttatgc tgccgatcaa
    23521 ctttttgcga cccttgaccc gactttacgc cggattcagg tgcaagatgt cggcacgaca
    23581 attcttgccg atacggtagg ttttatccgt tttctaccgc acgatttagt ttcagccttt
    23641 aaatctaccc tgcaagaaac caccgaagct actttactgc tccacgtcat tgacggctca
    23701 gacgaacgca aaaacgaaaa tattgatgcg gtaaatcaag tgttggacga aatcggagcg
    23761 ttagatattc ctactttatt ggtattcaat aaaattgata aattagaagg tgtagaaccg
    23821 catattgaac gcaatgccga tggcacgcca gttgccgtgt atctttccgc ccaagaaaat
    23881 agcggcattg agctgttatt ccaagccatt caagaaaggc ttcgcagtaa cttagtgtgt
    23941 gaaaacttgc tcctcccggt tactgccggt gcaatttacg cacaatttaa agcagaaaac
    24001 tgcattaaaa ccgagcattt taatgagttc ggtgaacgga ttatctctat tgaaattaac
    24061 gaagtgcaat ggaacaaatg ggtgaaacaa tttccggatc tagccgaata tattgagctg
    24121 gcaaaatggg ggtaattaat ctcacttctg agtaagttat atttaaatta tgcaagcggt
    24181 caattcttta cgtttttttg caaaaaagtg taaagaattg accgcttgtt ttatccatta
    24241 aatccaattt agccaataaa aaaatccctc aaataaacca gatttccccg ttctatttga
    24301 aggattttat ttattcttcc ccaaaagtgg ggaagaaaag cttaatcaag cagttactac
    24361 cactgataac ctacgcttgc agcagcacct gtatcaccac ggctgttaga gttaacactg
    24421 aatttgatac ccactttacc attatctgat aaacgagaat aacctacagc aatagctcct
    24481 tgaccacggt aagcacctac accggctgaa accatcgatt taccaggttg tgttacgtga
    24541 tataaattac ctgcggctaa tgcacctgca atacctgcac gtaagtcttt atctacgtta
    24601 ctgatacgat tgttcagacg attttctgca cctttcaact gattcacatt aacagcatca
    24661 gtgcctttca cacccggagc aacgttcgta atacgtgttt gcgcattctt gctacctgca
    24721 atgttaagct catttacgcc atcttttgca acagttgaac tgatagttgt accaccaact
    24781 ttcactgaat caaattcaag attgcttgag gttgccactt caacagttga acctttacgt
    24841 gaaacaacga tgtttttgcc acctgaaacg gccactttac cattgttatt aacacgttga
    24901 gcacctttct ctgaagtttc agctacatta ccatcaacag tgagatacca gcctgtattc
    24961 tgcattgcat tatacaactg gctaccgctc acaacatctt tacttgttgc cgttacatca
    25021 ccatctttaa cgttagtgat cttcgtgcct ttcgcatcaa taccgccttt agttacactt
    25081 gggccgtctt taatggttaa accattgtta tttacggttg tgtcgccagt tgttacagaa
    25141 ccatcttccg ttaaatcaat tgctttcgct aattgtacct ctaatgtgtc tgtaccattc
    25201 gctttcacat tgatgttgcc tgatgctgac ttaaagtttt cagaagctgt tttatccaca
    25261 ccttcacctt tcactttaac ttcagtattc agtttctgac ggttcttcac atcttcattg
    25321 ttaccagaga agattaaacc atcatttaag gttgcaactt gttctgtgac agttttaccg
    25381 tctttatctt tggtctcata aacgatacga gtcttaccgt tctcacccgg taatccatct
    25441 ttaccatttg taccatcaac accttcagca ccatctttca ctgcaatatt tgcacttgca
    25501 ccatctttac cgtcagcgcc tttcggaccg gttaagccga tagagccatc tttaccgttt
    25561 aatacaacag aagcgccatc tttacctgta gctccaattg aaccatcaac accgtcttta
    25621 ccgtcacggc ctgcagtaat tgtgccgtca cctttaatgg ttacgccatc tttaccgtct
    25681 ttgccagcaa taccgatttg accgtcttta ccatctttac caccaatggt taagttgttt
    25741 ttcaagccga aggtcacgtt attaccttct ttagtaataa taatgttacc gtctttgttg
    25801 tttagatcaa ctgttgctcc tggtttaacg ttgcctttgt ctttaccatt tgctgttaag
    25861 ttccaacctg cgttagcaac ttcttgcact tgatataact ggctaccatt taccgcatct
    25921 ttgctggttg cagaaatttc accgtcttga acgttaatga ttttcttatc gcctgcattg
    25981 ataccggctt tagttacact tgggccatct ttgatagtta aaccatcatt atttaccgta
    26041 gtatcaccaa tagttacaga accatctttc gttaaatcaa tgtctttcgc taatttaact
    26101 gttaacgcac cattgttgtt tacaacaccg atattgttat cggacaggtt cgttaaatca
    26161 gtatcaccgc ctgagatttt taacgtctca ttaagtttct taacgatttc tttaccgtca
    26221 tcacctacga atcttaagcc atcgttcagt gttgcaactt cctcagttgt accgtctggt
    26281 ttctcataaa cgatacgggt tttgctttcg ccatctttac cgtcgttacc gtcaaggcct
    26341 ttagcaccgt cttttacaga gatagttgca cttgcaccat ctttaccgtc agcgcctttc
    26401 ggaccggtta agccgataga gccatcttta ccgtttaaag taacaccaac tgtaccatct
    26461 gcacctttaa caccgattga accatcttta cctggaccgc caatggtaaa atcgttattt
    26521 aacgtaaagt caatcacatt atcacttact gttgtgatga tgtttttgtc tttagaggtg
    26581 tacttaacag tttcacctag tttaacgtga tcagtttcac cattatccgc tgcaatgcta
    26641 aagcctttct cgataatatc gttgcttgca tttacaacat cattaatatt cgcagcgtta
    26701 gtaccaactt cttttaattg atcgtctgtt aagtcgttca ctgaagtgat tggcttacca
    26761 tctttaccgt taatgccgtc tttacctgct aaaccgtcaa taccgctctt cacgttaaca
    26821 atttggttgc cgccattgtc tagaccgtct tcagtaagct taactgcttt accatctgtg
    26881 ccatcttttg gcgtgatagt tacgccatta ttatttacta ctgttgttgg acctttacct
    26941 tcttgaccat tctctccatc ttgtggtttg aatgtagctg agttcaagtc tttaagatct
    27001 ttagctaatt gaacagataa tttaccatct ttgctgttta cgccgatgtt atttgcagtt
    27061 agcttatctt tatcagctcc accaatgatt tctaaggttt cattcaattt cttagatact
    27121 agtgttgcat catcaccttt aaagtgtaaa ccatcattta aagtagctac ttgctctggt
    27181 tcacctatag gatcaccatt gccatctgtt ggctgatatt ggatacgagt tacaccatct
    27241 ttacctggta aaccatcttt accaacaagc cctggtttgc cctcagtacc tttaatggtt
    27301 aaaccatctt taccatttgt accgttcaag ccgattgaac catctttacc gttaagaaca
    27361 actgcagaac cgtctttacc gtttacaccg atagtaccat caataccatc tttgccaggg
    27421 cgacctacag tgatagctcc atctttacca tctaaagcaa tagcatcttt accgtcttta
    27481 ccagcaatac caactttacc tggttcacca tctttaccaa cagtaatatt attcactagg
    27541 ctaacttcta atgcatggcc accatctttc tcaacaacgt ttgttttaac attgccatca
    27601 ccaatgatct tagctgtcgt acctaagttt tgcttaaact ccttgttgtt ctcatctttt
    27661 agaccaaacg catctgttgt cacctcagta acagtctcag taacagtatt tttcaagtca
    27721 ccgacgttaa ccgcattgtt aagaacatca cctgctgcct cagtaagttt aacaggttga
    27781 ccatctttac cttttaagcc gctatcaaca ttggtgattt ggttaccacc gttgcttaag
    27841 ccatcctctg ttaaggtaac attagattta gttgcatcat taggatcttt cttagcaatc
    27901 gttacaccat ctttattgat aactgtagaa tcaccttgtg tgccgaatgt tgcactatct
    27961 aagcctgcta gatcttttgc taacgccaca gtaatggtat tgccaacaac ctgtgtcatg
    28021 atatttttac cagcatcaaa cttagcccaa tcagtgtttg ttgtagcacc tttaatatcc
    28081 acctgcgtat ttaatttcgc atcgtgaact ttgccatcat tcgcaccgaa ttttaagcca
    28141 tcgttaagtg ttgcaacttc ttctttatca ccatttggtt tttcgtaaac aatacgagtt
    28201 ttgctttcgc cgtctttacc gtcgttgccg tcaagacctt tagcaccttt ctcaacttta
    28261 attgatgctt taccatcttt tccatctttt ccatttacgc catcaacgcc gtggaatacg
    28321 atggcttctg gtttaattgt tacaccatct ttaccatcag cacctttaac accaactgaa
    28381 ccatctttac ctggtttacc accaacagag atgttatcgg ataagccaaa atcgatggta
    28441 ttatttgtta cggttgtaac aacattctta tcggttgagg tgtacttaac agtttcacct
    28501 aacttcacat tgtcttcttt agcaccacct cctaagccag agtgatccgc tgtaatgtta
    28561 aagccagttt taactaaagt gtcagctact gcgtaaagtt gtgaaccgtt aatcgcatct
    28621 gttgaattgg aagcaatttt acccggtgca acaaacttaa tttggcgagc attggttgca
    28681 ttacccacac tcacataatc accatcaaca acattttcat cgccagcaaa gctgctatat
    28741 tttaatgtgc caacagttgc agtatcttct ttagttgcgg ttgcttcagt agagtcagaa
    28801 cctagaatta cagaaccctt tgtcttaaca gtaacattag aacctaatac gaaagtatct
    28861 ttacctgaaa ctgtattgtt ataacctaaa gccgcagcac gaatacccga aacagtacta
    28921 tttacaccgg ctgcaattga gtttttaccc tttgcggttg agttgtaagc aatagcagtt
    28981 gcataattac cttttgattt ggcctcaaaa ccaattgctg tgccaccttc atgcgtaata
    29041 ttggcacgtg tacctactgc tgtcgcattc gccttactta cattagcact ataacctatc
    29101 gcaacagaat tattaccact tgaattagcc gtatcaccaa ttgccattgc accatctttg
    29161 ctcgcgttag aatgcgaacc aatactgatc actttttctg catgagagtt tgcattccaa
    29221 ccaatgctaa tagcattact tttccaggct ttagaagcat taccaaaagc aatcgcaccg
    29281 attcctgttg tattcgaatt tacaccaaag gcgatagaac catcacctgt tgcacttgca
    29341 tttgttgaaa acgccaaagt atcattcgaa tttgcacgag tattcgtacc caaagcaaat
    29401 gcattatttg ctactttcgc tgtatcagga ttaattacct gtcctaattc agaaatattt
    29461 gaattctcta atttaaagcc accggaccaa gcgttagtac caatggcaaa tgaatggtta
    29521 ccattagttt tcgctttagt accgattgag aatgcatctg ttccaaatgc taaagtatta
    29581 ttttgcccat cataaattga acgtctattt tcatgaccgt aacttccatc cactgtctgt
    29641 ggagtaccac taccaatcgc aaaagaacgg tcacctagcg ctgtagccga agcaccaatg
    29701 gcgaagctag ctgtagcatt tgcccaagat gttgaaccaa ttgcagtaga ataatctgca
    29761 attgcagcag attgacgcat tgcagcaaat gagttaaatc cttccgcacg tgcagaggta
    29821 cctaatgcta cagaaccaat acttgcagta cgagaaaaag aaccaattgc aatagacaat
    29881 ccccctccag aatatgaata atcaccaatg gctatgcctg acgctttcgg ttttcctcta
    29941 ctttttctgt tattgtctaa agctacagca ttgtgtccaa ttacaattgc tgaggtagta
    30001 ttagacttat acaataatct agaatccttc tccttattaa cagagttatt agattcttga
    30061 agcttagttc tgtctgcata ggataagcta cctgggttaa agtagttata tggattcgta
    30121 atagaatctg tagccaaact agtgtttgta taaatatcta taccaccatt aacaactttt
    30181 tttggtgctt tttgttgtac ttctattcta tcaataatca ccgccgcttc tgccggtgta
    30241 gcagaaagca taaaggctgc cattccactg ataagggttg ctccccctag aatgctagcc
    30301 gctgctaatt taatagtacc gcgcttatca gtagaagaag cggctttacc ttgcgatcga
    30361 gcaagttcag acacaacttc cattttttgc gtcgtttggt taaaaataac cttaaatatt
    30421 ttgttcataa ttttatacct ttagaattat tataaagctt acttcgtaaa taattcggca
    30481 attacaaccc accgaataaa caaccttact actcttaatt tagtaagagg aaagtcatat
    30541 cgataatagt aagattttca cttcaaaagt gaaacaagct tttcacttct ttacaattct
    30601 cttattatca agataataaa at
//
LOCUS       DANLVT010000017        30516 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.017, whole genome shotgun sequence.
ACCESSION   DANLVT010000017 DANLVT010000000
VERSION     DANLVT010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 30516)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30516)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30516
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.017"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..1420)
                     /gene="xseA"
                     /locus_tag="PXC99_000671"
     CDS             complement(<1..1420)
                     /gene="xseA"
                     /locus_tag="PXC99_000671"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005619079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HDL5417152.1"
                     /translation="MSNILTVTQLNYSVRHLLEMEMSHIWLTGEISNFSQPVSGHWYL
                     TLKDDKAQVRCAMFKMKNVRVNFRPQNGMQVLVRASVTLYEPRGDYQLIIESMQPAGE
                     GLLQQQFEQLKAKLSAQGLFAQEHKKPIPTFVKTVGIITSSSGAALQDILHILQRRDP
                     SLSVVIYPALVQGKEATQDIVNMIELANRRNECDVLIVGRGGGSLEDLWCFNEESVAY
                     AIYHSQIPIISAVGHETDVTIADFVADLRAPTPSAAAELVSRDQNELKRQLQHQFDKV
                     NLAFDRVWNHKFNRFQQLPLRLNAQHPSKQIQSQQQRFDYMEYRLEQAIYALVAAKKQ
                     VGKELNVRLIHQHPQKQIERQSQMLKQLELKLHWQMEQQLSKKQQKWKNITQRFERNP
                     LPYQLYQQQTMVAKMSQRLAYSIEKIMLKEQRHFQELCTKLDGLSPLKILTRGYSITQ
                     TKDGKTLTSTENIERGEAIITQL"
     gene            complement(1571..1647)
                     /locus_tag="PXC99_000672"
     tRNA            complement(1571..1647)
                     /locus_tag="PXC99_000672"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1611..1613),aa:Met,seq:cat)
     gene            1857..2963
                     /gene="mltA"
                     /locus_tag="PXC99_000673"
     CDS             1857..2963
                     /gene="mltA"
                     /locus_tag="PXC99_000673"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase A"
                     /protein_id="HDL5417153.1"
                     /translation="MNWKAYKKAIAAASVVAIATVLVACSSSGQKGKTTSYDAEKAKF
                     GAKYNGRHFMPYGTHFQAGRLGLNAAPVNQLDFLQQLSNVRAYSSLADSYAIAYGKIS
                     RWISSGGNINDLAKYGISTRLMRGEDGYQNVLMTGYYSPVIKARRTPQGQYQHPIYAM
                     PSSKRFSRAEIYAGALQGQGLELAYSNSMLDNFLLGVQGSGYVDFGDGRLNYFAYAGQ
                     NGFKYASVGRLLVEDGEIPKEKMSVQAIREWGQRNPSRVQGLLERNPSYVFFKNDPTG
                     QVKGSAGVPLVPLASVASDRSIVPSGSVLLVEMPLIDSKGNWTGKHEMRLMVALDVGG
                     AVKGHHFDLYQGIGDKAGHIAGLMKHYGRVWVLN"
     gene            2976..3425
                     /locus_tag="PXC99_000674"
     CDS             2976..3425
                     /locus_tag="PXC99_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417154.1"
                     /translation="MLKKLSAIFLLLPSAVLANNLQNITASTEPKYKISEIDVRILIR
                     QLNNIEQCIYPELAKPGYQQIYANWNLAENLTMQYFEYQLLKELLGEENQKLMQNDTL
                     STEYFHLLHSRLNHQKANVDPEKCDTFKPRYKEIYKSMENALTKKNQ"
     gene            complement(3459..4976)
                     /gene="purF"
                     /locus_tag="PXC99_000675"
     CDS             complement(3459..4976)
                     /gene="purF"
                     /locus_tag="PXC99_000675"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDL5417155.1"
                     /translation="MCGIVGIIGNSPVNQAIYDGLTLLQHRGQDAAGIVTIDDENRFR
                     LRKANGLVSDVFQQEHMVRLQGNVGIGHVRYPTAGSSSVSEAQPFYVNSPFGITLVHN
                     GNLTNNAELKARLYNEARRHVNTNSDSESLLNIFAYFLDLYSTQHLSPDNIFETVRKT
                     NDSIRGAYACIAMIIGHGMVAFRDPFGIRPLVLGKREIEGKTEYMFASESVALDVVGF
                     EFVRDVLPGEAIYVTFDGQLHSQICADNPKLNPCIFEYVYFARPDSVIDGVSVYSARV
                     HMGELLGEKIKREWGRIIDDIDVVIPIPETSNDIAVRIANMLYKPYRQGFVKNRYVAR
                     TFIMPGQAQRKSSVRRKLNAIASEFKGKSVLLVDDSIVRGTTSEQIVEMARAAGAKRV
                     YFASAAPEIRYPNVYGIDMPTCEELVAYDRSVEEVAQMIGVDKLIFQDLEALYKSIQL
                     ENPTIHRFDDSVFTGEYITGDVDKCYLDSIARSRNDKAKAEAAKQATNLEIHNER"
     gene            complement(4991..5494)
                     /locus_tag="PXC99_000676"
     CDS             complement(4991..5494)
                     /locus_tag="PXC99_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HDL5417156.1"
                     /translation="MVDLIVIGIIAFSVLISLWRGFTNEALSLLGWVIAFFVASSFYP
                     YLSGYLTQINSVYLQNSEFLRNGIAAAILFILTLIVCGVINGLLGKVIDLSGMSITDR
                     ILGGAFGALRGILIVSAILFFLDTFTQASQTELWKSSLLIPHFDFIVKWFFEQLQANS
                     SFLNTTK"
     gene            complement(5640..6101)
                     /gene="rnhA"
                     /locus_tag="PXC99_000677"
     CDS             complement(5640..6101)
                     /gene="rnhA"
                     /locus_tag="PXC99_000677"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HDL5417157.1"
                     /translation="MKLVEIFTDGSCLGNPGKGGIGILLRYNGYEKTVSKGYFQTTNN
                     RMELRAVIEALAMLKEPCKVQLNSDSQYMKNGIQKWIFNWKKNDWKTSDKKPVKNKDL
                     WVALDQEIQRHQIEWSWVKGHSGHRENEICDELAKQGANNPTLDDVGYIAD"
     gene            complement(6194..7525)
                     /gene="argG"
                     /locus_tag="PXC99_000678"
     CDS             complement(6194..7525)
                     /gene="argG"
                     /locus_tag="PXC99_000678"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005722481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HDL5417158.1"
                     /translation="MSATILEALPLGQKVGIAFSGGLDTSAALLWMRKKGAVPYAYTA
                     NLGQPDEDDYNAIPKKAMEYGAENARLIDCRQQLAHEGIAAIQCGAFHISTGGIPYFN
                     TTPLGRAVTGTMLVAAMKEDDVNIWGDGSTFKGNDIERFYRYGLLTNPKLKIYKPWLD
                     QLFIDELGGRLEMSKFLIENGFDYKMSVEKAYSTDSNMLGATHEAKDLEELSTGMKIV
                     KPIMGVAFWDESVEIKAETVSVTFEEGVPVALNGKRIDDAVELIMEANRIGGRHGLGM
                     SDQIENRIIEAKSRGIYEAPGMALLHIAYERLVTGIHNEDTIEQYRINGLRLGRLLYQ
                     GRWFDPQALMLRETAQRWVAKAITGTVTLELRRGNDFTILNTESPNLTYEAERLSMEK
                     VEDAPFTPADRIGQLTMRNLDIVDTRGKLAVYTDAGLLAANNSVIPQLGKK"
     gene            7709..8749
                     /locus_tag="PXC99_000679"
     CDS             7709..8749
                     /locus_tag="PXC99_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL5417159.1"
                     /translation="MKKLLVIRNDKIGDFMVCFPAFAMLKQSMPNVEITALVPSYTAP
                     LAELCPSIDKIIIDTANKKDKNEFNRILQAVKNEQFDAVICFVSDWHNAKLTWQSGIK
                     YRLAPATKLFQFLYNHRLTQRRSQSAKAESEYNLDLARAFLSKHNIPIVEPHTPYLSV
                     EQQTVQAQKAKLCEQLNITTVKKWVFVHSSTGGSANNLSIEQYAELIQGILAEFDCYV
                     VLTAGKGESEKAQQLAQQINHNNVVVYDKNEGLQDFTHSLACADLFIAGSTGPLHISG
                     ALNIPTIGFYPSRLSAIPRRWKPINDANKHIAFCPPSDKASQMNLTLISISEALKTIV
                     PFIRRMWNTPSL"
     gene            complement(8814..9572)
                     /locus_tag="PXC99_000680"
     CDS             complement(8814..9572)
                     /locus_tag="PXC99_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDL5417160.1"
                     /translation="MPTLSVAMIVKNEAQDLRACLDTVKDWVDEIVILDSGSTDETPQ
                     IAAEYNARFYTNTDWQGFGKQRQLAQQYVTSDYVLWLDADERVTAELKQSILQAVKND
                     EKNTVYKISRLSEVFGKQIRHSGWYPDCVVRLYRTEFAKYGDELVHEKVHYPKEAKIQ
                     KLQGDLLHFTYKDIHHYLVKSASYAKAWAIQRANAGKTASLFDGVTHAIGCFVKMYLL
                     KAGFLDGKQGFLLAVLSAHSTFVKYADLWNRTRK"
     gene            9699..10013
                     /gene="yhbY"
                     /locus_tag="PXC99_000681"
     CDS             9699..10013
                     /gene="yhbY"
                     /locus_tag="PXC99_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010786380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HDL5417161.1"
                     /translation="MSITLTTKQKQFLKGLAHHLSPVVMLGGNGLTEGVLAEIDNALD
                     HHELIKVKVAGADRETKQLIIDAILRETKAAEVQTIGHILVLYRQSEEKKISLPKATK
                     AI"
     gene            10074..10796
                     /locus_tag="PXC99_000682"
     CDS             10074..10796
                     /locus_tag="PXC99_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HDL5417162.1"
                     /translation="MFKKFSLYTLAMLLIPVVTWLANWHWSLAIQYAEFDFDYFLYLI
                     TETGSVPYAIITCVVFALLLARVVRKRYSLIFVITVCVASMVATQAIKTAMKSTFQEP
                     RPFVTALFQDKTDDFYQLTREQRGLAVMEKIGANQNFVTAHQAKEVGYSFPSGHTIFA
                     VSWLLLVVGFCRNMRGQAVVLAHFFAISWAALMLISRLRLGMHYPIDLFTSSLIAFLI
                     NLALFVWFVPWLESKKWFAKKP"
     gene            10865..11026
                     /locus_tag="PXC99_000683"
     CDS             10865..11026
                     /locus_tag="PXC99_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417163.1"
                     /translation="MEMSIEKIAELLSDKEKDDYPFSIEERQFAAQASADTWEAILNN
                     TIQPFDFKK"
     gene            11034..11396
                     /locus_tag="PXC99_000684"
     CDS             11034..11396
                     /locus_tag="PXC99_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417164.1"
                     /translation="MYQVFIAEPKDPNLEKGLLKHFIKSYLTQEELDFLHKILTNLPN
                     IRPFWGDTGYKYIVIDNVYFLYEVSESETKVILLGTKFNNKRKTFNFANTKTQQKSMK
                     KWINDLAIYKPHKINQSQ"
     gene            11409..12326
                     /gene="nagK"
                     /locus_tag="PXC99_000685"
     CDS             11409..12326
                     /gene="nagK"
                     /locus_tag="PXC99_000685"
                     /EC_number="2.7.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine kinase"
                     /protein_id="HDL5417165.1"
                     /translation="MAIYYGLDVGGTKIELAAFNEKLEKLHSERVPTPQTNYQDWLTA
                     IKTLVETADTKFDEKGTVGLGIPGFVNRETGIAEITNIRVADGKTILKDLAECLGREV
                     RAENDANCFALSEAWDESNKPYSTVLGLIIGTGFGGGFVFDGKIHSGRIGMAGEVGHM
                     QLNYHALKLLDWDKAPIYECGCGNQACLDTYISGRGFELLFNDLVGEKISAKAIIERF
                     YQQETKVVAFVEKYIELMAISISNLITILDPDMIVFGGGLSNFDYIYQALPKALPKHL
                     MRSAKVPVIKKAIHGDSGGTRGAAALFLK"
     gene            complement(12397..14346)
                     /locus_tag="PXC99_000686"
     CDS             complement(12397..14346)
                     /locus_tag="PXC99_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HDL5417166.1"
                     /translation="MYQRSQSRTVLFPILLFVGINLVILTLSRLVLGVWQSDRVSAVD
                     GWIPLILQGIRIDISSLCWLFGLPALFSVLCFHKNVLGSIWQTVLRIWLTVGSVFILF
                     MEVATPNFIETFDLRPNRLFIEYLVHPREVFTMLINGHLWAVICGIGIAMISLIIYWK
                     LSGWATKNLHFPSWKMRPLLALLVAAIVFVGGRSSFAHRGINPAMVAFSSDPLVNSLV
                     LNSGYSVLYAVQQLKDEDKSSEQYGKMSVEEMFNIVKQVRNRPASDYISDEIPTLTQN
                     KATYQGKPKNIVIILEESLGAQFVGSLGGKNLTPNLDKLSEQGWYFTNLYATGTRSVR
                     GIEAVTAGFTPTPARSVVKLTKSQTNFFSIAELLKRQGYHTSFIYGGEKHFDNMASFF
                     YGNGFQQIIDEKDYKNPKFTATWGVSDEDLFDKANETFNQLHKSGKPFFSLVFSSSNH
                     DPFEFPDGKIELYEQPKQTRHNAAKYADYAIGHFFELAKKSEYWQDTVFLVIADHDSR
                     AVGEHLVPIQHFHIPALLLGEHIQPRTDNRLVSQLDMPTTLLSVAGISGQYPMIGYDL
                     TQDIDPNRAFMQYDATQAMMRGNDVVVMRPNLPIEGFSYDKANYKLTPKEQPESFKKE
                     ALAHALLGSYLYKNQLYKLPEETKQ"
     gene            complement(14379..15167)
                     /locus_tag="PXC99_000687"
     CDS             complement(14379..15167)
                     /locus_tag="PXC99_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HDL5417167.1"
                     /translation="MQVTELNIYPIKSTQAIQVSQAFVEPKGLNFDREFMLAEPNGKF
                     ITARKDPELYRLAAFPIATGVMITHTSGQKCVALYQDFVEEQSSEVWGTHFNAKVAAE
                     AVNQWLSEIFGRAVQLRWLGSQSQRIVANFADHPMSFADSNPVSLMSLKSLEQVQQWS
                     PIPLEMARFRPNIVIDGNVAFEEEQWQQVQIGEVLFTKAALCTRCILITRDLNTLELD
                     PKSEPFRTLKEKHCDEKGKPVFGIHLVPQNSGVIKVGDPVIIQL"
     gene            15292..15522
                     /gene="xseB"
                     /locus_tag="PXC99_000688"
     CDS             15292..15522
                     /gene="xseB"
                     /locus_tag="PXC99_000688"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HDL5417168.1"
                     /translation="MAKKPTQDFESTLKELEAIVTHLESGDLPLEEALNEFETAIKLV
                     QQGQERLQKAEQRIQILLNKNDTAPLSDYERE"
     gene            15528..16421
                     /gene="ispA"
                     /locus_tag="PXC99_000689"
     CDS             15528..16421
                     /gene="ispA"
                     /locus_tag="PXC99_000689"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2E,6E)-farnesyl diphosphate synthase"
                     /protein_id="HDL5417169.1"
                     /translation="MSYLLATDLTHLQQRINHFLAEKLKTTDSVGSPLVEAMAYAVLL
                     GGKRVRPFLIYATGRMLGVPLEKLDHSAAAMEAIHAYSLVHDDLPAMDDDRLRRGKPT
                     CHIAFDEATAILAGDALQSFAFELLATDPHLTDREKVVQVTELATASGAKGMCLGQSL
                     DLIAENKAVSLEELELIHRNKTGALILSSVMMGLNLSEYSQNVAIKQPLVNYAKAIGL
                     AFQVQDDILDVIGETDKIGKIVGSDEHLNKSTYPKLLGLDGAKQKAEMLYQTALHSLE
                     QLPFDTTALKELANFIVKREN"
     gene            complement(16456..17256)
                     /locus_tag="PXC99_000690"
     CDS             complement(16456..17256)
                     /locus_tag="PXC99_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HDL5417170.1"
                     /translation="MCQLLGMNCNTPTDITFSFDGFRRRGGLTDHHTDGFGIAFFEGK
                     GVRVFRDNRPGASSPMAEAISQYQIKSLNVIAHIRKATRGDVNLENTHPFIRELWGEN
                     WVFAHNGTVEGVGVCEECHYQPIGTTDSEAAFCRIVSELKEMYPAKPSEKEIFDAVVQ
                     ITSRIAEHGVFNFVLSNGHWMIARCTTNLHYVCRKAPFGKALRDDDVSIDFSQYTKIT
                     DKVTIIATQPLTKNENWTKMKNGGYVFFKDGDVVYEIEGTLPEAQPHV"
     gene            complement(17381..18166)
                     /gene="znuB"
                     /locus_tag="PXC99_000691"
     CDS             complement(17381..18166)
                     /gene="znuB"
                     /locus_tag="PXC99_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter permease subunit ZnuB"
                     /protein_id="HDL5417171.1"
                     /translation="MFDILFPAWLAGVLLAFITAPLGAFVVWRKMAYFGDTLSHSALL
                     GVALGIFLELDPYLAVIGMTILLALLLVWLEQKTNYSVDTVLGIIAHTSLSLGVITIS
                     LLDNVRVDLMSYLFGDLLAINFSDVVFIGIGATLICLILMLFWKRLLSITISPELAQI
                     EGLNVARLRLLLMILTALTIALSMKFVGALIITSLLIIPSATARRFAKTPEKMVLIAI
                     FFSIIAVSGGLLLSSWKDTPAGPSVVICAGLIFLLSLFKKEYH"
     gene            complement(18253..19590)
                     /locus_tag="PXC99_000692"
     CDS             complement(18253..19590)
                     /locus_tag="PXC99_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HDL5417172.1"
                     /translation="MSSLSFDFSEDFRPLAAKMRPRNLAEYVGQSHLIGEGKPLRRAI
                     EAGHSHSMIFWGPPGTGKTTLAEIIAHHLDAEVERISAVTSGVKEIREVIEQAKLNRQ
                     AGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARIYI
                     LKPLQAVEILKILQMAIADTERGLGNETLVLEDDVLALLADYVNGDARFALNCLELMV
                     DMAQDSAKGKVLNKSLLTEVLGERQARFDKGGDRYYDLISALHKSIRGSSADGALYWY
                     ARILTAGGDPLYVARRLLAIASEDIGNADPRAMQIAIVAWDCFTRVGAYEGERAIAQA
                     IIYLAVAPKSNAVYQAFNEAKRLAKEAKDYDVPAHLRNAPTQLMKSLGYGEEYRYAHN
                     EPNAYAAGENYFPPELKDTEFYFPSERGMEKQIKEKMAWLKAQDQASPIQRYK"
     gene            complement(19600..20088)
                     /gene="mreD"
                     /locus_tag="PXC99_000693"
     CDS             complement(19600..20088)
                     /gene="mreD"
                     /locus_tag="PXC99_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HDL5417173.1"
                     /translation="MRTNPIFQILVIIAIFVVAFVLEIMPWPVGFQGLRPTWVVLVLI
                     YWALALPDKMSVGTAFIAGIVWDLILGSILGIHALVLSVAIYFVAKYHLILRNLSLWL
                     QSLLVMAYIVLIRFFIFVIEYILHSAEFNSQELLGAVISGVLWSWIFLLMRHIRRQLR
                     LR"
     gene            complement(20088..21143)
                     /gene="mreC"
                     /locus_tag="PXC99_000694"
     CDS             complement(20088..21143)
                     /gene="mreC"
                     /locus_tag="PXC99_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HDL5417174.1"
                     /translation="MKPIFAKAPSLGMRLIIAVIFSIMLIISDGRSSLMIQARNLLET
                     AVSGLYYFANTPRSILDGVSGNFIDNNKLQLENNLLKEQLREKSADLLLLDQLKVENQ
                     RLRLLLSSPLRQDEYKKIAEVLAAEMDAYRQQVVINQGRLDGAFVGQPIIDERGVVGQ
                     VISVGEKSSRVLLLSDITHAIPVQVLRNDVRGIASGTGVNNELVIDNLPRSIDVVKGD
                     VLVTSGLGGRFPEGYPVAIVETVENDTKSQFARIVARPLASFDRLRYLLLLWPTAEEK
                     NYSQSLSPAQVREVVEERRNSVNPFERLKQMSNKKTEVQLEAKEEQIENDEINENPAA
                     QPEAENEQNYHTEEGAE"
     gene            complement(21245..22297)
                     /locus_tag="PXC99_000695"
     CDS             complement(21245..22297)
                     /locus_tag="PXC99_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HDL5417175.1"
                     /translation="MFKKFLGLFSNDLSIDLGTANTLVYVKGQGIVLDEPSVVAVRQD
                     RMGSLKSIAAVGSHAKLMLGRTPKSIMAIRPMKDGVIADFFVTEKMLQHFIKQVHSNN
                     FMRPSPRVLVCVPAGATQVERRAIKESAIGAGAREVYLIEEPMAAAIGAGLPVHEAMG
                     SMVIDIGGGTTEVAVLSLNGIVYSTSVRIGGDKLDEAIIAYVRRHFGSAIGEATAERI
                     KQEIASAKIESDDDVKTMEVHGHNLAEGAPRTFELNSRHVLEAIEQPLNGIVEAVKSV
                     LEQCPPELAADIFERGMVLTGGGALLHNLDRLLSDSTGVQVVVAEDPLTCVARGGGKA
                     LEMIDMHGGDVFSIDD"
     gene            complement(22412..23041)
                     /locus_tag="PXC99_000696"
     CDS             complement(22412..23041)
                     /locus_tag="PXC99_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HDL5417176.1"
                     /translation="MDIFIQGFIVCFGLIVSIGAQNAFLLKQGILKQHIFWIALLCFL
                     GDVFLMTIGVLGLGTLIAELPVVSFIISLLGAIFLLSYGSRSFISVFKSGEYLVASGE
                     NATSLKKALLITFAITFLNPHVYIDTVVIVGSIGGKLDFNGKIYFLAGALLCSFIWFF
                     GIGYGASLLSPYFAKRRTWQILDAVTGLIMYFIAFSLLIYTYQLALQIF"
     gene            23145..23792
                     /gene="udk"
                     /locus_tag="PXC99_000697"
     CDS             23145..23792
                     /gene="udk"
                     /locus_tag="PXC99_000697"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HDL5417177.1"
                     /translation="MTDTSQTSSCVVIAIAGASASGKSLIASTIYKELKNELGTDNIG
                     IISEDAYYRDQSHLTMEERIKTNYDHPNSMDHHLLVEHLRQLKQGNAIEIPEYDYTEH
                     NRKTTTKHFEPKKIIILEGILLLTDENIRNEINVSIFVDAPLDICFIRRLQRDMVERG
                     RSMESVISQYRKTVRPMFLQFIEPSKQYADIIVPKGGKNRIAIDILKAQIKQLLK"
     gene            23807..24388
                     /gene="dcd"
                     /locus_tag="PXC99_000698"
     CDS             23807..24388
                     /gene="dcd"
                     /locus_tag="PXC99_000698"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HDL5417178.1"
                     /translation="MRLCDTDIKRYLDEGIIAITPRPSDDKISGATADVRLGNSFRVF
                     REHKTPYIDLSGPREEVAAQLNKVMSDEIIIGDDEAFFLHPGDLALATTLESVSLPAN
                     IVGWLDGRSSLARLGLMVHVTAHRIDPGWEGKIVLEFFNAGKLPLALRPNMAIGALSF
                     EILSGDAAKPYNARKDAKYKNQQSAISSRINQD"
     gene            24466..24621
                     /locus_tag="PXC99_000699"
     CDS             24466..24621
                     /locus_tag="PXC99_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009041538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 domain-containing protein"
                     /protein_id="HDL5417179.1"
                     /translation="MLHYAVVFFVIAIIAALLGFGGIAGSATEIAKILFFVFLILTVI
                     SFFFKKK"
     gene            complement(24750..25352)
                     /locus_tag="PXC99_000700"
     CDS             complement(24750..25352)
                     /locus_tag="PXC99_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL5417180.1"
                     /translation="METLIEFFSSYGYWAVFLVLLACGFGVPIPEDITLVSGGVISGL
                     GYTNVHWMLVVSMLGVLVGDSTMYWLGRIYGEKILKFPLIRNVATPERFATVQERFEK
                     QGWKLLFMARFLPGLRAVVYLVSGITRKVSFVKFLLVDFCAAIISVPIWVYLGDYGAS
                     NLDWLKEQVANGQHLIFAILGIVILFLGWKWYKNKKQYKK"
     gene            complement(25354..26373)
                     /gene="purR"
                     /locus_tag="PXC99_000701"
     CDS             complement(25354..26373)
                     /gene="purR"
                     /locus_tag="PXC99_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor PurR"
                     /protein_id="HDL5417181.1"
                     /translation="MATIKDVAKYAGVSTTTVSHVINKTRFVAEDTTKAVWEAIKALN
                     YSPSAVARSLKINTTKSIGMIITTSESPFFAEIVLAVEEFCYSKGYSLFLCNTQNKLE
                     KIQNHLDMLIKKRVDGILVMCSEYTANSFDIFENSNIPMVIMDWGRSDERSDIILDHG
                     VEGGYIATQHLIENGHQDIAVITGNRDKEIARTRFEGFKKALSEAGLSIREEWIQEGD
                     FEPEGGYECMNNLLKSSEKLPTAVFCFNDSMALGAISAITEKGLNVPQDISVIGYDNV
                     HSSRFYAPPLTTIHQSKSRLGSAALELLLERIEDNENAKEPKVLEFFPELVKRKSVRN
                     LNIKE"
     gene            complement(26509..27237)
                     /gene="cmoA"
                     /locus_tag="PXC99_000702"
     CDS             complement(26509..27237)
                     /gene="cmoA"
                     /locus_tag="PXC99_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HDL5417182.1"
                     /translation="MQRDTLFSAPIEKLGDFTFDESVAEVFPDMIQRSVPGYSNIITA
                     IGMLAERFVTDNSNVYDLGCSRGAGILSIRRNVNAKNVQIIGVDNSQPMVERCKTHLS
                     AYHSEIPVTILLDDIRHIEIKNASMVVLNFTLQFLPREDRLALLQKIYQGLNSNGILV
                     LSEKFTFESEEMNELLIDLHHTFKRANGYSELEVSQKRNALENVMRTDSIETHKKRLQ
                     EAGFTQVELWFQCFNFGSMIAIKA"
     gene            complement(27247..28029)
                     /locus_tag="PXC99_000703"
     CDS             complement(27247..28029)
                     /locus_tag="PXC99_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HDL5417183.1"
                     /translation="MTEKSQLNFNYQPSNNHANAQTMIFLHGLFGDLNNLGAIAKPFA
                     ERYSILMVDLRNHGRSFHSDEMNYALIAQDLAQLLTELNIQNAIVVGHSMGGKSAMAL
                     AAFAPELVEKLVVIDIAPVTYTQNRHQQVMAALFAVKEAKPQNRQQAKAIMAEYIRDE
                     GVQQFMLKSFDAQSEQSFRFNLQALKDNYQNVMGWQQVFVDKPTLFIKGALSDYIQAE
                     HTQTILAQFPQAKSFIVANADHWVHAEKTGTVVRAINKFLEK"
     gene            28148..28714
                     /gene="seqA"
                     /locus_tag="PXC99_000704"
     CDS             28148..28714
                     /gene="seqA"
                     /locus_tag="PXC99_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation negative regulator SeqA"
                     /protein_id="HDL5417184.1"
                     /translation="MKRIEIDDELYQYIASRTQSIGETASDILRRLLRLPQSPQPFVL
                     VQEHMINELKELVKTPSRATKKNESNAEKTVEKLENILNSEHFMNENKNVVRFTMLLA
                     ALYRANPEAFAKATEKVRGNERIYFSQSEAEILATGSGVKAKQIPDSPFWVITNNNTA
                     RKGLILKGVMESMKVPSQLIERIQALFI"
     gene            28724..30142
                     /gene="menE"
                     /locus_tag="PXC99_000705"
     CDS             28724..30142
                     /gene="menE"
                     /locus_tag="PXC99_000705"
                     /EC_number="6.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate--CoA ligase"
                     /protein_id="HDL5417185.1"
                     /translation="MLINSTRFPTQFWAAHSAQNVAIIWEKGTSDYLNHLPSNITWYS
                     LNQLIAQAIFVLQQQGATPHSLIAYCGSHRLIGLLTYCASLALGAKILMLNPAQTASQ
                     RQAVLDDNGVELIINDADFAKFSAKTTACNAFPTIDFEKPATLTLTSGSSGKPKAVVH
                     SIAAHLYSAEGVCELMAFEQPNSWLLSLPLFHVSGQGIIWRWLFKGATLYVHEDKSDF
                     FLSAQKVSHLSLVPTQLQRYLNQLDSMVSQKCLLGGSMLPAELIAQAQQSGMTTFSGY
                     GMTEMASTICAVENDLNSVGFPLKHRELKLENGEIWVKGKSLGLGYWQKNGQIRPLVN
                     TQGWFATKDRGEWNHKKQLVIKGRLDNMFISGGENIQPEEIEQLIFRSQLVEQIIVLP
                     IEDKQFGHRPVAFLQFKQSDSKNELHKLKIWLSDKLERFKQPVAYYLLDIEKYQKQGL
                     IKLSRTQLQQDLKLKVLKEIYV"
     gene            30135..>30516
                     /locus_tag="PXC99_000706"
     CDS             30135..>30516
                     /locus_tag="PXC99_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel MscK"
                     /protein_id="HDL5417186.1"
                     /translation="MFRPILKTFVLSLGLMLNSYALAELPTQQVVQTQLDSAKKLDQA
                     DADNKALVQTLEDTLAFLAQIDKQKADNQALNKSIQDSQKALKTSQHNLEKLKEVTIA
                     SVDNLTQKATTDLQKELTSTQSQLE"
BASE COUNT         9461 a         6471 c         5662 g         8922 t
ORIGIN      
        1 ttagttgggt gataatagcc tcaccacgtt caatattttc tgttgaagta agcgttttac
       61 cgtctttagt ttgggtaatt gagtagcctc tggtcaagat tttcaatggg ctaagtccat
      121 caagtttagt gcataactct tgaaaatgtc gctgctcttt cagcattatt ttttcgatag
      181 aataagccaa gcgttgcgac atttttgcca ccatcgtttg ttgctgataa agttgataag
      241 gtagcgggtt gcgttcaaac cgttgcgtaa tgtttttcca tttttgctgt tttttgctga
      301 gttgctgctc catttgccaa tggagtttca gctccaattg cttaagcatt tgggattggc
      361 gttcaatctg cttttgcgga tgttggtgaa ttaaacggac atttagctct ttccccacct
      421 gctttttggc tgcaacaagt gcataaattg cctgctcgag gcggtattcc atataatcaa
      481 aacgttgctg ttgcgattga atttgtttgc ttggatgctg agcattcagg cgtaagggga
      541 gttgttggaa acggttaaat ttatggttcc aaactcggtc aaaggctaaa ttcactttat
      601 caaactgatg ttgtaattgg cgtttcaatt cattttgatc tctgctgact aattccgcag
      661 cagccgaagg cgttggtgcg cgcaaatctg caacaaaatc agcaatggtc acatcggttt
      721 cgtgtcccac cgcactgata atcgggattt gtgaatgata aatggcataa gcgacactct
      781 cttcgttgaa acaccataaa tcctctaatg aaccgccacc tcgcccgaca attaatacat
      841 cacactcatt gcggcggttt gccagttcaa tcatattcac aatatcttgc gttgcttctt
      901 tgccttgcac gagagccggg taaataacca ctgataagct cggatctcgt cgttgcaaaa
      961 tatgtaaaat atcttgtaat gcggctccgc ttgaggaggt aataatacca acggttttaa
     1021 caaaagtagg aattggcttt ttatgctctt gagcaaacaa gccttgagct gaaagttttg
     1081 ctttaagttg ctcaaattgc tgctgtaaca agccttcgcc cgccggttgc atactctcaa
     1141 taatgagctg atagtcacct cgtggctcat agagtgtaac acttgcccgc accagcacct
     1201 gcataccgtt ttgtgggcga aaattcactc ttacattttt cattttaaac atcgcacaac
     1261 gcacttgtgc tttgtcatct tttaaagtga gataccaatg ccccgaaact ggttggctga
     1321 aatttgagat ttcgccggtt agccaaatat ggctcatttc catttcgagc aaatggcgga
     1381 cggaatagtt gagttgggta acagttaaaa tattgctcat aataatcaaa aaagcgtaaa
     1441 tgtagtagaa gtgtaacgag aaatgaaagc gagaggaagc ttttgcagtc aacaagcggt
     1501 tattttttgc tgttttttgg caaataaaac gaaaaccctc gatgtgattc actatcgagg
     1561 gtttggaatg tggttgcggg ggccggattt gaaccagcga ccttcgggtt atgagcccga
     1621 cgagctacca agctgctcca ccccgcgtct gatgaggcta taatatatca atttgacata
     1681 atgacaagta aaatcataca aaattgctct aagtgatgta aattacaaca gatatagtat
     1741 caaaatacgc ttattgttgt aaaaacaatc aaattatatt ctggttttat tttgtcgctg
     1801 tttttgctat tcttctgttt atttttcaca ttttattaac gatataagga tattcgatga
     1861 attggaaagc atataaaaaa gctattgcgg cagctagcgt ggtagcgatt gcaacggtat
     1921 tagtggcgtg ttcgtcttca ggccaaaaag gcaaaacaac ctcttatgat gcggaaaaag
     1981 ctaaatttgg agcaaaatat aatggtcgtc actttatgcc ttatggcaca cattttcaag
     2041 ctggacgttt aggattaaat gctgctcctg ttaatcaact agacttttta cagcagcttt
     2101 ctaatgtcag agcctatagt agcttggcag attcttatgc tatcgcttac ggaaaaatca
     2161 gtcgttggat ctcatcgggc ggtaatatta atgatttagc aaaatatggt attagtactc
     2221 gtttaatgcg tggcgaagat ggctaccaga atgtgttaat gacagggtat tactcgccgg
     2281 ttatcaaagc ccgtagaacg cctcaggggc aataccaaca cccgatttat gcgatgccgt
     2341 ctagcaaacg tttttcacgg gcggaaattt acgcaggagc attgcaaggt cagggcttag
     2401 aactggctta tagtaattca atgctcgata acttcttatt aggtgttcaa ggtagcggtt
     2461 acgttgactt tggtgatggt cgcttaaact attttgctta tgcagggcaa aatggcttta
     2521 aatatgccag cgttgggcgt ttattagtag aagatggcga aattccgaaa gagaaaatgt
     2581 cagtgcaggc tatccgtgaa tgggggcaac gtaaccctag ccgtgttcaa ggtttgttgg
     2641 agcgtaatcc atcgtatgtt ttctttaaaa acgatcctac cggtcaggta aaaggctctg
     2701 ccggtgtgcc gttagtacca cttgcatctg ttgcatcaga tcgtagcatt gtgccatcag
     2761 gtagcgtgtt gttggtcgaa atgccgttga ttgatagcaa aggaaattgg accggcaaac
     2821 acgaaatgcg tttaatggtg gctcttgatg ttggcggtgc agtgaaaggc catcacttcg
     2881 atttatatca agggattggc gataaagcag gccatatcgc aggtttaatg aaacattacg
     2941 gccgtgtttg ggtattaaat taatacaggg taactatgtt aaaaaaacta tctgccatat
     3001 tcttacttct accgagcgcc gtgcttgcaa ataatttgca aaatataacc gcttcaactg
     3061 agcctaaata taaaatctca gaaatagatg tcagaatttt gatacgccag ctcaataata
     3121 ttgagcaatg tatctatcct gagttagcta aacccggtta ccagcaaatc tacgcaaatt
     3181 ggaatctggc tgaaaattta acgatgcaat attttgaata tcagcttcta aaagagttgc
     3241 tcggagagga aaatcagaaa ctgatgcaaa atgatacgct ttctaccgag tatttccatt
     3301 tactgcattc tcgtttaaat caccaaaaag caaatgtaga tcccgaaaaa tgcgatacat
     3361 ttaaacctag atataaagag atttataaaa gtatggaaaa tgcactcact aagaaaaatc
     3421 aatagtaaaa aactcgcagt tttcactgcg agtttctttt atctttcgtt atgaatttct
     3481 aaattggtgg cttgttttgc cgcctctgct tttgctttat cgtttcgaga tcttgctata
     3541 ctgtctaaat agcatttatc tacatcacct gtaatatatt ctcctgtaaa tacagagtca
     3601 tcaaagcgat gaatagtcgg attttccagt tgaatagact tataaagtgc ttcaaggtct
     3661 tggaaaatca atttatccac ccctatcatc tgtgcaacct cttccactga gcgatcataa
     3721 gccactaatt cttcacaagt cggcatatca atgccataca cattcgggta gcgaatttcc
     3781 ggtgcggcag aggcaaaata aacccgtttt gcaccagctg ctcgtgccat ttccacgatt
     3841 tgttcagacg ttgtacctcg tacaatagaa tcatcaacca gtaacacgct tttgccttta
     3901 aattcagagg caatcgcatt taatttacgg cgaaccgagc ttttacgctg tgcttgcccc
     3961 ggcataataa aagttcgagc tacatagcgg tttttaacaa acccttgacg atagggttta
     4021 tacaacatat tagcaatacg taccgcaata tcatttgagg tttcaggaat cgggatcacc
     4081 acatcaatat catcgataat tcgtccccat tcacgtttaa ttttctcacc taataattcg
     4141 cccatatgca ctcgtgcaga atatacagaa acgccatcaa tgacggaatc aggacgggca
     4201 aaataaacat attcaaaaat acaaggattc agttttggat tatcggcaca aatttgcgaa
     4261 tgtaattgcc catcaaaggt aacataaatc gcttcacccg gcagcacatc tcgcacaaat
     4321 tcaaacccca ctacatcaag agccacactt tccgaagcaa acatatattc ggttttaccc
     4381 tcgatttcac gtttacccag cactaacggg cgaataccga atgggtcacg gaaagcaacc
     4441 ataccgtgtc cgataatcat cgcaatgcaa gcataagcac cacgaatgct atcattggtt
     4501 ttacgaaccg tttcaaagat attgtctggg cttaaatgct gagtggaata gagatctaaa
     4561 aagtaagcaa aaatattaag aagggattca gaatcagaat tagtgttcac atggcggcgg
     4621 gcttcgttgt ataagcgagc tttaagttcc gcattattag ttaaattacc gttgtgaact
     4681 aaggtaatac cgaaaggtga attgacataa aatggctggg cttcagacac acttgagcta
     4741 cctgctgttg ggtagcgaac gtgaccaatt ccaacattgc cttgtaatct caccatatgc
     4801 tcttgctgga aaacatcgct gactaagccg ttagctttgc gtaagcggaa acgattttca
     4861 tcgtctatgg tgacgatacc tgcggcatct tgtcctcggt gttgaagtaa tgttaaacca
     4921 tcataaatcg cctgattcac cggcgaattc ccaataatac cgacaatgcc gcacatatag
     4981 aaaaacctct ttatttagtc gtgtttaaaa aactggaatt tgcttgtaac tgttcaaaga
     5041 accacttcac aataaagtca aaatgcggaa ttaatagcga tgatttccat aattccgttt
     5101 ggcttgcttg ggtaaaggta tctaagaaaa ataaaatagc cgacacaatt aaaataccac
     5161 gcaatgcccc aaaagcaccg cctaaaatac ggtcggtgat agacattccg ctcaaatcaa
     5221 tcactttgcc taataaaccg ttgatcacac cacaaacaat taaagtcaaa atgaacagaa
     5281 tcgccgctgc aataccattg cgtaaaaatt ctgaattttg caaataaacc gaattaattt
     5341 gtgtgagata accgcttaaa taaggataaa acgagcttgc cacaaaaaag gcgattaccc
     5401 aaccaagtag cgataatgct tcattggtaa aacctcgcca taaactgata agcactgaaa
     5461 aagcaatgat tccgataaca attaaatcaa ccataacaca ccttaaagcg taaagctctc
     5521 ctattctaca aaaaaagaaa acgtttgcgt agcactattt cgctaaaaat aagtgcttta
     5581 tgcaaataca agcggttaaa ttcggtaaaa aatttacaca atccgaccgc ttgtaaaacc
     5641 tagtctgcaa tataaccaac atcgtccaac gttggattat ttgctccttg tttagccagc
     5701 tcatcgcaaa tctcattttc acgatgtcct gaatgccctt tcacccaact ccattcaatt
     5761 tggtggcgtt gaatttcttg gtctaaagca acccataaat ctttattttt aactggcttt
     5821 ttatcgctgg ttttccagtc atttttcttc cagttaaaaa tccatttttg gatcccgttt
     5881 ttcatatatt ggctgtcact attgagttgc accttacaag gctcttttag cattgctaaa
     5941 gcctcaatca ccgcccgcaa ttccattcgg ttattggtgg tttgaaaata gcctttgctc
     6001 acggtttttt cgtacccgtt ataacgcagc aaaataccaa tccccccttt gccggggttg
     6061 cctaaacaag aaccgtctgt aaaaatttca actaatttca tcatcacgct ttgaaaataa
     6121 aagccccaaa gcattaactt tggggcagct tttaggctaa attctaaaag ttatcagaat
     6181 ggagatcaac tgattatttt tttccaagtt gtggaatcac gctattatta gccgccaata
     6241 aacctgcatc ggtataaact gctaatttac cacgggtatc gacaatatct aagttacgca
     6301 ttgttaattg accgatacga tctgccggcg taaacggtgc atcttctact ttttccatac
     6361 ttaaacgttc tgcttcgtag gttaagtttg gcgattcagt gttaagaata gtgaaatcgt
     6421 taccacggcg taactcaagc gtgaccgtac cggtaatcgc ttttgccacc caacgttgag
     6481 ccgtttcacg caacattaaa gcttgcgggt caaaccagcg gccttgatac aataaacgcc
     6541 ctaaacgtaa tccgttaatg cgatattgct caatcgtatc ttcgttgtga ataccggtaa
     6601 ctaaacgctc gtaagcgatg tgtaataatg ccattcccgg tgcttcataa ataccacgag
     6661 atttcgcttc gataatacgg ttttcgattt ggtctgacat tcccaaacca tgtctgccac
     6721 caatgcggtt agcctccata attaattcaa cggcatcatc aatacgttta ccgtttaacg
     6781 ccaccggcac accttcttca aaggtaacag aaacagtttc cgctttaatt tcaactgatt
     6841 cgtcccagaa tgccacgccc ataatcggtt ttacgatctt cataccggtg cttaattctt
     6901 ctaaatcttt cgcttcgtgg gttgcaccta acatattcga gtctgtagag taggcttttt
     6961 ccaccgacat tttatagtca aaaccgtttt cgattaagaa tttagacatt tccaagcgac
     7021 cgcctaattc atcaatgaat agttggtcta accacggctt ataaattttt aattttggat
     7081 tggttaataa accgtaacga tagaaacgct caatatcgtt acctttaaag gttgaaccat
     7141 cgccccagat attcacatca tcttctttca ttgccgcaac caacattgtg ccggttaccg
     7201 cacgaccaag tggcgtggtg ttgaaatacg gaataccgcc ggttgaaata tggaaagcac
     7261 cgcattgaat tgcggcaatg ccttcgtgag ctaactgttg gcgacagtcg attaatcgtg
     7321 cattttcagc cccatattcc atcgcttttt tcggaattgc gttgtaatca tcttcatccg
     7381 gctgacctaa atttgcggtg tacgcataag gcactgcccc ttttttacgc atccataaca
     7441 gtgctgctga ggtatctaaa ccgcctgaaa aggcgatacc cactttctgc cctaaaggta
     7501 aagcttctaa aattgttgct gacatacgaa ttcctataaa ttttgaaagt aaaaatattc
     7561 aaacgcaaac gcttacgttc aagcaaaata ttctagctga aaagtagtaa aaattcatct
     7621 aaaatttagc ccgatgattt gcaaattttt tgtgaaattt gaccgcttat aatttactga
     7681 aaacctaaaa gcaatagaga aaatcagaat gaaaaaacta ctcgtaatcc gtaatgataa
     7741 aattggggac tttatggtct gctttccggc atttgctatg ttgaagcaat caatgccgaa
     7801 tgtggaaatt accgctcttg tgccaagtta tactgctcca cttgccgagc tttgcccttc
     7861 tattgataag attattattg atacggcgaa taaaaaagat aaaaatgaat ttaaccgtat
     7921 tttacaagcg gttaaaaatg agcaatttga tgcggttatt tgttttgttt cagactggca
     7981 taatgccaaa ctcacctggc aaagtgggat taaataccgc ctcgctccag caactaaatt
     8041 attccaattt ttatataacc accgtttaac ccaacgccgt tctcaatcag caaaagcgga
     8101 atccgaatat aatttggatt tagcccgtgc ttttttaagc aaacacaata taccgattgt
     8161 tgaacctcac acgccatact taagtgttga acagcaaacc gtccaggcac aaaaagcaaa
     8221 attatgcgaa caactcaata ttaccaccgt taaaaagtgg gtatttgtgc atagttcaac
     8281 cggtggttcg gcaaataatt tatctataga acagtatgca gagttaattc aaggtatttt
     8341 ggcagaattt gattgctatg tggtactcac cgcagggaaa ggcgaaagcg aaaaagctca
     8401 gcagttagct caacaaatca atcacaacaa cgtggtggtt tatgataaaa atgaggggtt
     8461 acaagatttt acacattcgc ttgcgtgtgc agatttgttt attgccggct caaccggtcc
     8521 gttacatatt agtggggcgt taaatattcc aactattggc ttctacccga gccgactttc
     8581 tgccattcca cgccgttgga aaccgattaa tgatgcgaat aaacacattg cattttgccc
     8641 accgtctgat aaagcctcac aaatgaattt aactttaatt tctatttctg aggcattaaa
     8701 aacgatagta ccgtttattc ggagaatgtg gaatactccc tctctctgat aaaattgcta
     8761 aacgcaattt tatctatctc tctcccacta gagggagaga gtactgaaaa gcatcatttc
     8821 cgagtacgat tccacaaatc cgcatatttt acgaaagtag aatgtgccga aagaactgcc
     8881 aataaaaatc cttgcttgcc atctaaaaaa ccggctttta atagatacat tttcacaaaa
     8941 cagccgatgg cgtgagtcac gccatcaaat aagctggctg ttttgcctgc atttgcccgt
     9001 tggattgccc acgctttagc gtaacttgcc gattttacca aatagtggtg aatatcttta
     9061 taggtgaaat gcagcaaatc gccttgtagt ttctggattt ttgcctcttt tgggtaatgt
     9121 actttttcgt gaaccaattc atcaccatat ttggcaaatt ccgtgcgata caatctcacc
     9181 acacaatccg gataccaacc cgagtggcga atttgtttgc caaatacttc acttaagcgg
     9241 ctgattttgt aaacggtatt tttttcatca tttttgaccg cttgtaaaat agattgcttc
     9301 agttcggctg tcactcgctc atctgcatca agccaaagta cataatcact ggtcacatat
     9361 tgttgagcta actgacgctg tttaccaaag ccttgccaat cggtgttagt gtagaacctt
     9421 gcgttgtatt cagcagcaat ttgtggtgtt tcatcagtac tgccactatc taaaatcaca
     9481 atttcatcta cccaatcttt tactgtgtca aggcaagccc gtaaatcttg agcttcattt
     9541 ttgacaatca tcgcaacact taatgtcggc atagtttatc cttctctctt tttgtcgtgt
     9601 gtttttctgc tattcgttgc attttacttt aaaaatagtg gtttttgtgc tattttctac
     9661 gccaaatttt atcaacaaaa caaattaacg gaaaaagaat gtcaattaca ttaacaacca
     9721 aacaaaaaca attcctaaaa ggcttggctc atcatttaag cccagtggtg atgctggggg
     9781 gtaacggctt aacagaaggc gtgttagctg aaatcgataa cgccttagac caccacgaac
     9841 tgattaaagt taaagttgcc ggggctgatc gtgaaaccaa acaattaatt attgatgcca
     9901 ttctgcgtga aactaaagcg gctgaagtac aaaccattgg gcacatttta gtgctttacc
     9961 gccaaagcga agagaaaaaa atcagcttgc caaaagcaac taaagcgatc taattgcaaa
    10021 aatatgttta aattcaaccg cttgtattca agcggttttt tataggactt tctatgttta
    10081 aaaaattctc tctttatacc cttgcaatgt tgctcattcc tgtggtgact tggctggcaa
    10141 attggcactg gtctctggca attcaatacg ctgaatttga tttcgactac tttttatatt
    10201 taatcaccga aaccggctcc gtaccttatg ccatcatcac ctgtgtggtt ttcgccttat
    10261 tactggcgag ggtggttcgc aaacgctact ctttaatttt tgtgattacc gtgtgtgtcg
    10321 cttcaatggt agccactcaa gcaatcaaaa cagcgatgaa atcaaccttt caagagcctc
    10381 gtccatttgt cactgctctt ttccaagata aaacagacga tttttatcaa ttaacacgcg
    10441 agcaacgtgg gcttgccgta atggaaaaaa tcggtgcaaa tcaaaatttt gttaccgctc
    10501 accaagccaa agaagtgggc tattctttcc catcaggcca cactattttt gcggtttctt
    10561 ggctattatt ggtggtaggt ttctgccgta atatgcgagg acaagcggtc gttttggctc
    10621 atttttttgc aatcagttgg gcggcgttaa tgctgattag ccgcttgcgt ttaggtatgc
    10681 actacccgat tgatttattc accagtagtt taattgcgtt tctaatcaat ttagccttat
    10741 ttgtgtggtt tgtgccttgg ttggaaagta aaaaatggtt tgctaaaaag ccttaattgg
    10801 caatttagcc aaatcaatat acaatacaaa ttattgaata agtacctaaa ataaggagct
    10861 tagaatggaa atgtcgatag aaaaaatagc tgaactatta agcgataaag aaaaagatga
    10921 ctatccgttt agtattgagg aaagacaatt tgccgcccag gctagtgctg atacttggga
    10981 ggcaatctta aataacacta ttcaaccttt tgacttcaaa aaataggctt gctatgtatc
    11041 aagtttttat tgcagaacca aaagacccaa acttagagaa aggcttattg aaacacttca
    11101 ttaagtctta tcttactcaa gaagaactcg atttcctgca taaaattctc actaatttac
    11161 ccaacatcag acctttttgg ggcgataccg gttacaaata tatcgtcatt gataatgttt
    11221 acttcttgta tgaagtttcc gaaagtgaaa cgaaagtcat tctacttggc accaaattta
    11281 ataataaacg gaaaactttt aattttgcga atacgaaaac ccagcaaaaa tcaatgaaga
    11341 aatggattaa tgatttagca atttataaac cgcataaaat caatcaatcg caataagaga
    11401 gcgtaattat ggcaatttat tatggcttag atgtgggcgg cacaaaaatt gaattagccg
    11461 cttttaatga aaaactagaa aaactacaca gcgaacgtgt gccgacaccg cagacaaatt
    11521 atcaagattg gctgacggca attaaaacgc tggttgagac tgccgataca aaatttgacg
    11581 aaaaaggcac tgtcgggctg ggcattccgg gctttgtaaa ccgtgaaacc ggcattgcgg
    11641 aaattaccaa tattcgagtg gctgacggca aaacgattct gaaagattta gccgaatgtt
    11701 tagggcgtga agtgcgtgcc gaaaacgatg ctaactgctt tgccctgtct gaagcgtggg
    11761 acgaaagtaa taagccttat tccaccgtat tagggttgat tatcggcacc ggttttggcg
    11821 gtggttttgt gtttgacggt aaaattcatt caggcagaat cggaatggca ggcgaagttg
    11881 ggcatatgca acttaactac cacgcactta aattgctcga ctgggataaa gccccaattt
    11941 atgaatgtgg ttgtggcaac caagcctgtt tagacaccta tatttcaggg cggggttttg
    12001 agttactgtt taatgattta gtaggagaaa aaatctcggc gaaagcgatt atcgaacgct
    12061 tctaccaaca agaaaccaaa gtggtggcat ttgtcgaaaa atatattgag ctaatggcaa
    12121 tcagtatcag caatctgatt acgattttag atccggatat gattgtattc ggtggcggtt
    12181 tatccaactt tgattatatc taccaagctc taccaaaagc attaccaaaa cacttaatgc
    12241 gttcagcgaa agtgccggtc atcaaaaaag caattcacgg cgactcaggt ggcactcgtg
    12301 gtgcagcagc attattctta aagtaatgaa caaatttgag agagggcaag cggtcatttt
    12361 taataaaaat attgcagccc tctcttttaa tttgccttac tgcttagttt cttccggtaa
    12421 tttatataac tgatttttat ataaataact gccaagcaat gcgtgtgcta acgcctcttt
    12481 tttaaacgat tccggctgtt ctttaggggt gagtttatag ttagctttat cgtagctaaa
    12541 tccttctatc ggtaaatttg gtcgcattac caccacatca tttccccgca tcatcgcctg
    12601 tgtcgcatca tattgcataa aggcacggtt tgggtcaatg tcttgcgtta aatcataccc
    12661 tatcatcgga tattgaccac ttattcccgc cacagaaagt aatgttgtcg gcatatcgag
    12721 ctgactcact aaacggttat ccgttcttgg ctgaatgtgt tcgcctaata aaagtgccgg
    12781 aatatggaag tgttgaattg gcactaaatg ctcgccaacg gctcttgaat cgtgatctgc
    12841 aatcactaaa aacaccgtat cttgccagta ctctgatttt ttcgctaact caaagaaatg
    12901 cccgatagca taatcggcat attttgccgc attatggcga gtctgcttcg gttgttcata
    12961 gagttcaatt ttgccgtccg gaaattcaaa cggatcgtgg ttactggaac tgaataccaa
    13021 actaaaaaac ggtttacctg atttgtgcag ttgattaaaa gtttcatttg ccttatcaaa
    13081 cagatcttca tcactcacgc cccaagttgc ggtaaattta gggtttttat aatctttttc
    13141 atcgataatt tgctggaaac cattaccgta gaaaaagctc gccatattat caaaatgctt
    13201 ctccccacca taaataaagg aagtatggta tccttgacgt tttaataatt cggcaatact
    13261 aaaaaagtta gtttggcttt tcgtcagttt taccacagat cttgccggtg ttggtgtaaa
    13321 accagccgtt accgcttcaa ttcctctcac cgaacgagta cctgttgcat aaagattggt
    13381 aaaataccag ccttgttctg aaagtttatc taaatttgga gtgagatttt tccctcctag
    13441 cgaaccgaca aattgagccc ctaaactttc ttctaagata atcacaatgt ttttaggctt
    13501 tccttgataa gtcgctttat tttgcgtgag ggtgggaatt tcatctgaaa tataatctga
    13561 agctggtcga ttacgaacct gcttaacaat gttgaacatt tcctccacag acatttttcc
    13621 atactgttcg gaagatttat cttcatcttt caattgctga accgcataaa gcacggaata
    13681 acctgaattt agcaccagtg aattgacaag cggatcgctt gaaaatgcca ccattgccgg
    13741 attaatccct cgatgggcaa aactggaacg cccaccaaca aaaactattg cagcaaccaa
    13801 taaagccagt agcggacgca ttttccagct cgggaaatgc aaatttttgg ttgcccaacc
    13861 cgataatttc caataaatga tgagagaaat catcgcaatg ccaatcccac aaataacagc
    13921 ccataaatgt ccgttaatca gcattgtgaa cacttctctc ggatggacca aatactcaat
    13981 gaaaagacga tttgggcgaa ggtcaaaggt ttcaataaaa ttcggtgtgg cgacttccat
    14041 aaaaagaata aatacactac cgacagttag ccaaattctt aaaacagtct gccaaatcga
    14101 acccagtaca tttttatgaa aacacaacac gctaaataat gccggtaagc caaatagcca
    14161 acatagcgaa gatatatcaa tgcgaatacc ttgtagtatt aatggtatcc atccatcaac
    14221 agcggatact cgatcagatt gccaaacgcc taacactaaa cgggataagg tgaggataac
    14281 taaattaatc ccaacaaata gtaggattgg aaatagcaca gttcttgatt gactgcgttg
    14341 gtacattttg aatctccttt taaaaaaata tcggcatatt ataattgaat aatgacagga
    14401 tcgcctactt ttatcacacc actgttttgt ggcacaaggt gaataccgaa caccggctta
    14461 cctttttcat cgcaatgctt ttcttttaag gttctaaacg gctccgattt ggggtctaac
    14521 tcaagcgtgt ttaaatcccg tgtaatcaaa atgcaacgag tacataatgc cgctttggta
    14581 aatagcactt cgccaatttg aacttgttgc cactgctctt cttcaaatgc cacattgcca
    14641 tcaatcacaa tattcgggcg aaaacgagcc atttcgagtg gaatcggcga ccattgttgc
    14701 acttgctcaa gcgattttag agacatcaaa ctcaccgggt tgctatctgc aaaactcatt
    14761 gggtgatcgg caaaattcgc aacaattcgt tggctttgcg agccaagcca acgtagttgc
    14821 acagccctac caaaaatttc actcagccat tgattgaccg cttctgccgc cactttggca
    14881 ttaaaatgtg ttccccacac ttcactactc tgctcttcca caaaatcttg gtaaagtgca
    14941 acgcattttt gaccgcttgt atgggtaatc attacccctg tcgcaatcgg gaaagccgct
    15001 agacggtata attccggatc tttacgggca gtaataaatt tgccgttagg ctcggctagc
    15061 ataaattcac ggtcaaaatt taagcctttc ggttcaacaa atgcctgtga aacttgaata
    15121 gcttgagttg attttatcgg gtaaatattg agctcggtaa cttgcataga aaatcctcca
    15181 tttggaaata ggataacaat acctgcaagc ggtcgaaaag taaaaggaat ttgcaaatcc
    15241 cttgtgagaa cggtaaactt gagcaacttt tacagcaata ggtcagcaac aatggcaaag
    15301 aaacccactc aagattttga aagcacactt aaagaattag aagcaatcgt tacccatttg
    15361 gaatccggtg atttaccgct tgaagaagcc ctcaacgaat ttgaaactgc aatcaaatta
    15421 gtgcaacaag ggcaagaacg gttacaaaaa gccgagcaac gtattcaaat cttattaaat
    15481 aaaaacgata ctgccccact tagcgattac gaaagagaat aatcacaatg agctatctat
    15541 tagcaaccga tctgactcac ctgcaacaac ggattaacca ttttctcgct gaaaaattaa
    15601 aaacaacgga tagcgttggt tcgcctttag tagaagcaat ggcttatgcg gtattgctag
    15661 gcggtaaacg ggtgcgaccg tttttaatct atgccaccgg cagaatgctt ggtgtgccgt
    15721 tggaaaaatt agatcatagt gcggcggcaa tggaggctat tcacgcttac tcgctggttc
    15781 acgatgattt accggcaatg gacgatgata gattacgccg tggcaagcca acctgccata
    15841 ttgcctttga tgaagctacc gctattttag ccggtgatgc gttacaaagt tttgcgtttg
    15901 aactgctggc aaccgatccg catttgaccg accgagaaaa agttgttcaa gttacagaat
    15961 tggcaaccgc ttccggtgca aaaggaatgt gcttagggca aagtttggat ttgattgcgg
    16021 aaaataaagc ggtgagcttg gaagagcttg aattaattca tcgcaacaaa accggggcat
    16081 tgattctatc atccgtgatg atgggattaa acctttccga atattcgcaa aatgtagcca
    16141 taaaacaacc gcttgtaaac tatgccaaag cgattggctt agcctttcag gtgcaagatg
    16201 atattttaga tgtcattggc gaaacagata aaatcggcaa aatagtgggt tcagatgaac
    16261 acttaaataa aagcacatac ccgaaattgt tgggcttaga cggggcaaaa caaaaagccg
    16321 aaatgcttta tcaaaccgct ctccattcgc tggaacagtt gcctttcgat accaccgcat
    16381 taaaagagtt agctaatttt attgttaagc gtgaaaacta agaaaaaacc tagccgaagc
    16441 taggtttttt agtgattaaa cgtgaggctg agcttccggc aatgtgcctt caatttcata
    16501 taccacatcg ccgtctttaa agaaaacata gccaccgttt ttcattttgg tccagttttc
    16561 atttttggta agtggctgag tggcaataat cgtcacttta tcggtaattt tggtatattg
    16621 actaaaatca atcgacacat catcatcacg caaggctttg ccaaacggtg ctttacggca
    16681 aacgtaatgc agattagttg tacaacgggc aatcatccaa tgaccgttgg ataaaacaaa
    16741 attaaatacc ccgtgttccg caattcttga ggtgatttgc accacggcat caaaaatctc
    16801 tttttcgctt ggtttagccg gatacatctc ttttaattcc gacacaatac ggcaaaatgc
    16861 cgcttcggaa tcggttgtac caatcggctg gtagtggcac tcctcgcata ccccaacacc
    16921 ttccactgtg ccgttatggg caaacaccca gttctcgccc cataattcac gaatgaaggg
    16981 gtgggtattt tccaaattca catcaccacg cgtagcttta cgaatatgtg caataacatt
    17041 gagcgattta atttgatatt ggctgattgc ttctgccatc ggcgatgatg ctcccgggcg
    17101 gttatcacga aaaacccgaa cccctttgcc ttcaaaaaag gcaattccaa acccatcagt
    17161 atggtgatcc gtcagcccac cccgacggcg aaatccatca aaagaaaaag taatatcggt
    17221 tggcgtatta caattcattc caagtaattg acacataatt tgcttcttaa aaccaaataa
    17281 tttacaacaa aaaataattg ttacatttaa acagattgat tagaaaattc aatgctcttt
    17341 acataaaaat cttatgcttt attttcatac attatgctgt ttaatggtat tcttttttga
    17401 atagcgataa tagaaaaatc aagccggcac aaatgactac cgaaggccct gctggtgtat
    17461 ctttccaact ggataacaat aaaccgccac tgactgcaat aatactgaag aaaatcgcaa
    17521 tcaacaccat tttttcaggc gttttagcaa agcgtcttgc cgtagcagac ggaataatca
    17581 gcagtgaggt aataattaaa gcaccgacaa atttcatact taatgcgata gttaatgcgg
    17641 ttaaaatcat cagcaataaa cgtaagcgag ccacatttaa tccttcaatt tgagcaagtt
    17701 ccgggctgat ggtaatcgac aacaaccgct tccaaaacag cattaaaatc aaacaaatta
    17761 gggttgctcc gattccgata aacaccacat cagaaaaatt aattgccagt aaatcgccga
    17821 ataagtaaga catcaaatcc actcgtacat tatccaacaa actaatggta attaccccga
    17881 gagaaaggct agtatgggcg ataatcccca acacggtatc caccgaataa ttggtttttt
    17941 gctccaacca aaccagcaat aatgcaagaa gaatagtcat tccaattaca gcaagatacg
    18001 gatcgagttc taaaaaaatc cctaatgcca cgccgagcaa tgcagagtgc gaaagtgtgt
    18061 cgccgaaata cgccattttt cgccacacca caaaagcccc tagaggtgcg gtaataaagg
    18121 ctaacaaaac accggcaagc caagccggaa ataaaatatc aaacatattg gttctcaaag
    18181 gcaagtaaaa caagcggtta ttttttcgga aaaatttgca aattttttgc tgatttagac
    18241 cgcttgtcat atttatttat aacgttgaat cgggctggct tgatcctgtg ctttcagcca
    18301 cgccattttt tctttaatct gtttttccat tccccgctca cttgggaagt agaattcggt
    18361 atctttcagc tcaggcggga aataattctc cccggcggca taagcgtttg gctcattgtg
    18421 ggcatagcga tactcttcgc catagcctaa agatttcatt aattgagtgg gagcattacg
    18481 caaatgcgcc ggcacatcgt agtcttttgc ctctttagcg aggcgctttg cttcattaaa
    18541 agcttgatag accgcattgc tctttggggc aactgccaaa taaatgatcg cttgggcaat
    18601 cgctctttca ccttcataag cccccactcg ggtaaagcaa tcccaagcca caatcgcaat
    18661 ttgcattgct cgagggtcgg cattaccaat atcttcagaa gcaatcgcaa gcagccttct
    18721 tgccacataa agcggatcac caccggcggt taaaattcgg gcataccagt ataatgctcc
    18781 atcagccgat gagcctcgaa tggatttatg taacgcagaa atgagatcat agtaacgatc
    18841 accgccttta tcaaaacgag cttgtcgttc gcctaacact tcggtcagca aacttttatt
    18901 cagcactttc cctttagctg aatcttgtgc catatctacc attaattcca aacagttcaa
    18961 ggcaaaacgg gcatcaccat taacataatc agcaagcaat gccagtacat catcttcaag
    19021 taccaaagtt tcattgccta aaccacgttc ggtatcggct atcgccattt gcaaaatttt
    19081 tagaatttcg accgcttgta acggctttaa aatataaatt ctggctcggg aaagcagtgc
    19141 gttatttagc tcaaaagagg gattttcggt agtcgcacca ataaaaataa tagtgccgtc
    19201 ctcaatatgc ggtaaaaacg catcttgctg gcttttgtta aagcggtgaa cttcatccac
    19261 aaaaagcaac gttcgtctgc cggcttggcg gtttaatttg gcttgttcaa tcacctctcg
    19321 gatctctttt acaccgctgg tcacagcgga aatacgttca acttccgcat caagatgatg
    19381 ggcgataatt tcagctaggg tcgtttttcc ggtgccgggc ggtccccaaa aaatcataga
    19441 atgactatgt ccggcttcaa tcgctctgcg taacggtttg ccttcgccaa ttaaatgaga
    19501 ttgcccgaca tattcagcca agtttcgagg tcgcattttg gctgcaagcg gtcgaaaatc
    19561 ttcactaaaa tcaaaagaca aactactcat tttaacctct taacgtaacc gcagttggcg
    19621 acgaatatga cgcattaata agaaaatcca agaccaaagc acaccactga ttacagcacc
    19681 taacaattcc tgtgaattaa attcggcact gtgtaaaatg tattcaatca cgaaaataaa
    19741 gaaacggatc agcacaatat atgccattac taataggctt tgtagccata gcgataagtt
    19801 tcgcagaatc agatggtatt tcgcaacaaa ataaatcgcc accgataaca ctaaggcgtg
    19861 gatgcctaaa atcgagccaa gaatcagatc ccagacgatg ccggcaataa aagccgtccc
    19921 cacactcatt ttatcaggta atgccaatgc ccaataaatt aacaccaaaa cgacccaagt
    19981 agggcgtagc ccttggaatc ctaccggcca aggcataatc tcaagtacaa aagcaaccac
    20041 aaaaatcgca attatcacaa ggatctgaaa aatcgggttt gttctcatta ttccgctcct
    20101 tcttccgtat gatagttttg ttcattttcc gcttctggtt gtgctgccgg attctcattt
    20161 atctcatcat tctctatttg ttcttctttt gcctctagct gcacttcagt tttcttgtta
    20221 gacatctgtt ttaaacgttc aaatggattc acgctattac gtctttcttc aacaacttca
    20281 cgtacttgcg ctggcgacaa gctttgggag tagtttttct cttccgccgt cggccaaagc
    20341 agtaataagt aacgtaagcg atcaaatgag gctaacggac gagcaacaat tctggcaaat
    20401 tgacttttgg tatcattttc aaccgtttct acaatcgcca ccggatatcc ctcagggaaa
    20461 cgtccaccta agcctgaagt caccagcaca tcacctttta ccacatcaat agaacgaggc
    20521 aagttatcaa tgaccaattc attattcacc cctgtaccac tggcaatgcc acgtacatca
    20581 ttgcgtagca cttgaacagg aatagcatga gtaatatcag agagcaataa aacacggcta
    20641 gatttttccc ctacagaaat aacttgtcca acaacacctc tttcatcaat aataggttgc
    20701 ccgacaaaag caccgtctaa acgcccttga ttaatcacta cttgctgacg ataagcatcc
    20761 atctcagcag ctaatacttc agcaattttt ttatactcat cttgccgaag cggagaactc
    20821 aataacaatc ttaaacgctg attttcaacc tttagctgat caagcaataa taaatcggca
    20881 cttttttctc ttagctgctc ttttaataaa ttattctcaa gctgtaattt attattatca
    20941 ataaaattgc cacttacccc atctaaaatt gaacgggggg tattagcaaa ataatataat
    21001 ccacttaccg cggtttctaa tagattacgc gcttgaatca ttaaagagct acgcccatcg
    21061 gaaataatca gcataataga aaatatcact gcgataatca ggcgcatccc taaagaggga
    21121 gctttagcaa aaataggttt cattagagaa atatatgtga atttattggg aatctataac
    21181 gaaaattgac aatagaatca atccattgcc aacctccatt taaacagctg ctaagagaaa
    21241 tgtattaatc atcaatacta aatacatcac caccgtgcat atcgatcatt tctaatgctt
    21301 taccaccacc acgagctaca caagttaatg gatcttctgc tactacgact tgcacgccag
    21361 ttgaatcaga aagtaaacga tctaaattat gtaataatgc accacctcct gttaacacca
    21421 taccgcgctc aaaaatgtct gctgccaatt caggtgggca ttgctctaag actgatttaa
    21481 ctgcctctac aataccattt aatggttgtt caattgcttc taatacatgt cttgagttaa
    21541 gctcgaaagt acgaggagcg ccttcagcta aattgtgtcc gtgtacttcc attgttttaa
    21601 catcatcatc ggattcaatc ttagcactag caatttcttg tttaattcgc tctgccgttg
    21661 cttcaccaat agcagaacca aaatgacgac gtacataagc aataatagct tcatctaact
    21721 tatcaccacc aatacgcaca gaagttgaat acacaatgcc gtttaaagaa agcactgcca
    21781 cttcggttgt accgccacca atgtcaatta ccattgaccc cattgcttcg tgaaccggca
    21841 aacctgcacc gattgcagcc gccattggct cttcaattaa atagacttca cgcgctcctg
    21901 ctccaattgc agattcttta attgcacggc gttccacttg tgttgcacct gctggcacgc
    21961 acactaatac acgagggctt gggcgcataa agttattact atgtacttgt ttaataaagt
    22021 gttgcaacat tttttctgtt acaaaaaaat ccgcaatgac accatctttc attggacgaa
    22081 tcgccattat gctttttggt gtacggccta gcattaattt tgcatgtgag cctaccgccg
    22141 caatactttt tagcgatccc atacgatctt gacgtacagc aaccactgag ggttcatcta
    22201 gcacaatacc ttgaccttta acataaacca gtgtatttgc tgtcccgaga tcgatagaaa
    22261 gatcgtttga aaataatcct aaaaattttt taaacataaa agaatccgtt aaaataaaat
    22321 tattcaaaaa taagcacatt ttatagtgcg aacattgcta ctaatatagc aaaaaagccc
    22381 gtcattcatc aatgaaaaaa tttaaactcc actagaaaat ttgcagagca agttgataag
    22441 tataaatcag taaactaaaa gcgataaagt acataattag cccggtaaca gcatctaaaa
    22501 tttgccaagt tcttcgcttt gcaaaataag gggaaagtaa gcttgctcca taacctatgc
    22561 caaaaaacca aataaatgag caaagtaatg cacctgctaa aaagtatatt ttaccgttaa
    22621 aatctaattt cccaccgata ctgcctacaa tcacaaccgt atcaatataa acgtgaggat
    22681 ttaagaatgt aatcgcaaag gtaatcagta aagccttttt taagctcgtt gcattctctc
    22741 cacttgccac aaggtattca ccacttttaa atacgctgat aaatgaacgg ctaccgtagc
    22801 ttaatagaaa aatggcccct aaaagcgaaa taatgaaact tacaacaggc aattccgcaa
    22861 ttaacgtgcc taagcctagc acacctatcg tcattaaaaa tacatcacct aaaaaacaga
    22921 gcaatgcaat ccaaaatatg tgttgtttta aaatcccttg ctttaataaa aaggcatttt
    22981 gtgcgccaat agagacaatt aagccaaaac acactataaa tccttgaatg aaaatatcca
    23041 ttttttctcc aaaatcgcat aacaagcggt caattataca aaaaattttg caaaacttcg
    23101 gtataattta tcgaatactc ttttgactga ataggaaatt ttttatgact gatactagcc
    23161 agacttcatc ttgcgttgtc attgcgattg ccggcgcatc tgcctcaggt aagagcctga
    23221 ttgcctcaac catctataaa gaactcaaaa atgaattggg aacagataat atcggtatta
    23281 tttccgaaga tgcttattat agagatcaat ctcatctaac aatggaagaa cggattaaaa
    23341 ccaattacga tcaccctaat tcaatggatc atcatttatt ggttgaacat ttacgccaat
    23401 taaaacaagg taatgcgatt gaaattccag aatatgacta taccgaacat aatcgtaaaa
    23461 cgaccacgaa gcactttgaa ccaaagaaaa tcattatttt agaaggtatt ttattgctga
    23521 cagatgagaa tattcgcaat gaaattaatg tttctatttt cgtagatgct cctctggaca
    23581 tctgctttat ccgccgctta caacgtgata tggtggaacg tggacgttcg atggaatcag
    23641 tgattagtca atatcgcaaa accgttcgcc caatgttctt acaatttatc gaaccctcta
    23701 aacaatatgc tgatattatt gtgccaaaag gtggcaaaaa ccgtattgcc attgatattc
    23761 ttaaagcaca aattaagcaa ttactaaaat aaaataggag ctaaatatgc gtttatgtga
    23821 tacagatatt aaacgttact tagatgaagg tattattgcc ataacgcctc gaccttcaga
    23881 cgataaaatt tctggcgcca ctgcagatgt gcgtttaggt aattcgtttc gtgtatttcg
    23941 tgaacataaa acgccctata ttgatttaag tggccctaga gaagaagttg ccgctcagtt
    24001 aaataaagtg atgagtgatg aaattatcat cggtgatgat gaagcatttt tccttcatcc
    24061 cggtgacctt gcactcgcaa caacccttga atcggtttcc ttaccagcca atatcgttgg
    24121 atggttagat ggtcgttcgt cacttgctag attaggctta atggtacacg ttaccgccca
    24181 cagaatcgat ccgggttggg aaggcaaaat tgtattggaa ttttttaatg ctggaaaatt
    24241 acccctagct ttacgcccta atatggcaat tggcgcatta agctttgaga ttttaagtgg
    24301 tgatgctgca aaaccctata atgcgcgaaa agatgcaaaa tataagaacc agcaaagtgc
    24361 catttcaagt cggattaatc aagattaata tagtacatgc cttgcaatca tacattaact
    24421 atgttagttt tttaatcagt ttattacaca gtaaggagta taactatgtt acattatgca
    24481 gtcgtatttt ttgtcatcgc tataatcgca gcgctattag gatttggtgg tattgctgga
    24541 agtgctactg aaattgccaa aattctcttt tttgtctttt taatacttac tgttatttcg
    24601 ttcttcttca agaaaaagtg acacagttaa acctaatttt ttaagttaaa atatagttca
    24661 aaaaaacagt tggtaatgga tatttataat tattcttacc aactgttttg ctattatatc
    24721 tttttaagat gaaatgctcg tcttttgttt cactttttat actgcttttt atttttatac
    24781 catttccagc ctaaaaatag aataacaatg cctaaaatgg caaaaatgag gtgctgccca
    24841 ttagctactt gttcttttag ccaatccaaa ttagatgccc catagtcgcc taaataaacc
    24901 caaattggca cagagataat agcggcacag aaatcaacta ataaaaattt tacgaagctg
    24961 acttttctgg taatacctga aactaagtaa accaccgcgc gcaagccagg taaaaaacga
    25021 gccataaaaa gtagtttcca tccttgtttt tcaaaacgtt cttgcacggt tgcaaaacgt
    25081 tcaggtgtcg caacattcct gattaatgga aatttgagaa ttttttcgcc atagattcta
    25141 cctagccagt acattgtgct atcgccaact aatactccta acatactaac aaccagcatc
    25201 caatgcacat tggtgtagcc taatcctgaa ataacaccac cggatactaa cgtaatatct
    25261 tcaggaatcg gcacaccgaa accacaggca agtagcacaa gaaaaacagc ccaataacca
    25321 tagctactaa aaaattcaat caatgtttcc atattactcc ttaatgttta aattccgaac
    25381 cgatttacgt ttgaccaatt caggaaagaa ctctaatact ttaggctctt ttgcgttttc
    25441 gttatcttca atacgttcta ataataattc taatgctgcc gagcctaagc gagattttga
    25501 ctgatggatt gtcgtaagag gcggtgcata aaagcgtgag ctatgcacgt tatcataccc
    25561 gatcactgaa atatcttgcg gcacattcag ccctttttcg gtaatagctg aaattgcccc
    25621 tagtgccatt gagtcattaa aacaaaaaac cgcggttggt aatttttcac tgctcttaag
    25681 caaattattc atacactcat accccccctc aggttcaaaa tcgccttctt gaatccattc
    25741 ttcacgaata gacaaacccg cctcagatag cgctttttta aaaccttcaa aacgggttct
    25801 tgcaatttct ttatctctat tgccggtaat tacagcaata tcttgatgcc cgttttcaat
    25861 taaatgctga gtcgcaatat agccaccttc aacaccgtga tctaaaataa tatcactgcg
    25921 ttcatcactt cgtccccaat ccataatcac cattgggata ttgctgtttt caaagatatc
    25981 aaatgaatta gctgtatatt cggagcacat caccaaaatg ccatcaaccc gttttttgat
    26041 gagcatatct aaatgatttt gaattttctc aagtttgttt tgagtattgc acaaaaatag
    26101 tgaataccct ttgctatagc aaaattcctc taccgctaac acaatttcag cgaaaaacgg
    26161 tgattcgctg gttgtaatga tcataccgat agatttagtc gtattaattt tcaaactccg
    26221 cgctacagca ctaggagaat agttcagcgc tttaatagcc tcccaaactg cttttgtagt
    26281 gtcctctgct acaaagcggg ttttgtttat aacgtgagaa accgttgtag tcgatacacc
    26341 agcatatttt gcgacatctt ttatcgttgc catacctttt tcctcctaaa taagtagtgg
    26401 tgcattataa ctgattctaa ctgactttta ttataaagaa atagatagaa tgcaagcggt
    26461 tgctttttat caagaatttg caaaaaattt tacaaatatc accgcttgtt aggctttaat
    26521 tgcaatcatt gagccaaaat taaagcattg aaaccaaagt tcaacttgtg taaaaccagc
    26581 ttcttgcaga cgttttttat gggtttcaat actatctgtt cgcatcacat tttccaaagc
    26641 attacgcttt tggctgactt ccaattcact gtagccattt gctcgtttga atgtgtgatg
    26701 aaggtcgatc aatagctcgt tcatttcctc actctcaaag gtaaattttt ccgataacac
    26761 taaaatgcca ttggaattta atccttgata aatcttctgt aataatgcta ggcgatcttc
    26821 tcttggtaaa aattgcaagg tgaaattaag taccaccatt gaagcatttt taatttcaat
    26881 gtggcgaata tcatcaagta aaatcgtcac cgggatctca gagtgataag cacttaaatg
    26941 ggttttacaa cgctcaacca tcggctgaga attatctacc ccgataatct gcacattctt
    27001 cgcattcaca ttacggcgaa tagataaaat ccctgcgcct cgtgaacaac ctaaatcata
    27061 aacatttgaa ttatctgtga caaaacgctc cgccaacatt ccaatagcag taataatatt
    27121 ggaatagccc ggcacggagc gttggatcat atccggaaac acttcagcaa ccgattcatc
    27181 aaaagtaaaa tcgcccaatt tctcaatcgg agcggaaaat aatgtatctc tttgcatttt
    27241 tctcccttat ttttctaaaa atttattgat tgctctcaca acagttcctg ttttttctgc
    27301 gtgaacccaa tgatcagcgt ttgccacaat gaaagatttg gcctgcggaa attgtgccaa
    27361 aatcgtttgt gtatgctctg cttgaatata atccgataat gcacctttaa taaacaaggt
    27421 cggtttatcc acaaatacct gctgccaccc catcacattc tgataattat cttttagcgc
    27481 ctgtaaatta aaacggaaag attgctcgct ttgggcatca aaagatttca acataaactg
    27541 ttgcacgcct tcatctcgaa tatattcagc cattatcgct ttagcttgct gacgattctg
    27601 gggtttagct tctttcaccg caaataaggc tgccataacc tgctgatgcc gattttgggt
    27661 ataagtgacc ggggcaatat caatcactac caatttctcc accagttcag gagcaaatgc
    27721 agccaatgcc atcgcacttt ttccgcccat tgaatgccca accacaatag cattttggat
    27781 atttaattct gtgagtaatt gtgctaaatc ttgtgcaatc aaagcataat tcatttcgtc
    27841 tgaatgaaaa gatcgcccgt gatttctgag atcaaccatt aaaatggagt aacgttctgc
    27901 gaatggtttt gctattgcgc ctaggttatt taaatctcca aacaatccat gtaagaagat
    27961 catcgtctga gcattagcat gattattcga aggttggtaa ttaaagttta actgcgattt
    28021 ttctgtcata taaatgtcat tgttcatata aattttcagc gatgttcctc tataaaaaac
    28081 aatagaaatg cgtataatag caagcactat taacgcattt aatacccgca gatatttgag
    28141 gatcccgatg aaacgaatcg aaattgatga tgaattatat cagtatattg caagccgtac
    28201 acaatctatt ggtgaaactg cgtcagatat attacgccgt ctattacgcc tgccacaatc
    28261 gcctcagcct tttgttttag tacaagaaca catgatcaac gagcttaaag agcttgtcaa
    28321 aacgccttct cgtgctacga aaaaaaatga atccaatgca gaaaaaaccg ttgaaaaatt
    28381 ggaaaacatt ttaaattccg agcattttat gaacgaaaat aaaaatgtag tgcgttttac
    28441 tatgctatta gccgcattat atcgagcaaa tccggaggct tttgctaaag caaccgaaaa
    28501 agtgcgtggt aatgaacgta tctacttttc gcaaagtgaa gccgaaattt tagctactgg
    28561 gagtggagta aaagccaagc agatcccaga ttcaccgttt tgggtaatta ccaataataa
    28621 taccgcacgc aagggactta ttctcaaagg cgtaatggaa tccatgaaag taccaagcca
    28681 gttaatcgaa cgcattcaag cgctttttat ctaattaatt gaaatgctca tcaattctac
    28741 tcgctttcct acccaatttt gggctgctca ttcagcccaa aatgtggcga ttatttggga
    28801 aaaaggaaca tcagactatc ttaaccacct tccatcaaac atcacttggt atagtttgaa
    28861 tcagttgatt gcgcaagcta ttttcgtgtt gcaacaacaa ggtgctactc cgcacagttt
    28921 gattgcctat tgtggttctc atcggctcat tggcttgctc acttattgtg ctagccttgc
    28981 tttgggggct aagattctaa tgcttaaccc tgctcaaaca gcaagtcaac gacaagcagt
    29041 cttagatgac aatggtgttg agctcattat taatgatgcc gactttgcaa aattttcagc
    29101 aaaaacgacc gcttgtaatg ccttccctac gattgatttt gaaaaaccag ctaccctaac
    29161 cctaacctca ggctcaagcg gtaaacctaa agcagtggtg cattctatag cggcccatct
    29221 ctatagtgcc gaaggagtat gtgaattaat ggcatttgag cagccaaact cttggctact
    29281 gagcttgcct ctgtttcacg tttccggaca aggcattatt tggcgttggt tatttaaagg
    29341 tgcaacactg tatgttcacg aagacaaaag tgattttttt ctttcagcac aaaaagtgag
    29401 ccatctctct ttagtcccca cccaattaca acgctattta aaccaattag attctatggt
    29461 cagccaaaaa tgtttactgg gtggatctat gcttccagcc gaattgattg ctcaagcaca
    29521 acaatctggg atgactacct tttcaggcta cggaatgact gagatggcat caaccatttg
    29581 tgcagtagaa aatgatttaa acagtgttgg ttttccgtta aaacatcggg aactaaaatt
    29641 agaaaatggt gaaatttggg taaaaggcaa atcactcggc ttaggctatt ggcaaaaaaa
    29701 tgggcaaatt cgaccgcttg taaacacaca aggctggttt gccactaaag atcgtggcga
    29761 atggaatcac aaaaaacagc ttgtaataaa aggacgattg gataatatgt ttatttcagg
    29821 aggggaaaat atccaacctg aggaaattga acaactgatt tttcgttctc agcttgtcga
    29881 acagattatc gtgttgccga ttgaagataa gcaatttgga catcgaccag tggcgttctt
    29941 acaattcaag caatctgatt caaaaaatga actccataaa ttaaaaattt ggctgtctga
    30001 taaattagaa agattcaaac agcctgttgc ctattattta ctggatatag aaaaatacca
    30061 aaaacaaggc ttaattaaac tatcaagaac acaattacaa caagatttaa aactcaaagt
    30121 attaaaggaa atctatgttt agaccgattt taaaaacatt tgtgcttagt ttaggcttaa
    30181 tgctaaatag ttatgcatta gctgaattgc caacccaaca ggtagtgcaa acgcagttag
    30241 atagcgccaa aaaattagat caagccgatg cggataataa ggcattggtt caaacacttg
    30301 aagatacgct tgctttctta gcccaaattg ataaacaaaa agcagataat caggcattga
    30361 ataaatctat tcaagattcc caaaaagcat taaaaacaag ccaacataat cttgaaaaat
    30421 taaaagaggt gactattgca agtgtcgata atttaacaca aaaagcgaca acagatttac
    30481 aaaaagagtt aacctctaca caatctcagc tggaaa
//
LOCUS       DANLVT010000018        29321 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.018, whole genome shotgun sequence.
ACCESSION   DANLVT010000018 DANLVT010000000
VERSION     DANLVT010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 29321)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29321)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29321
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.018"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(76..1671)
                     /locus_tag="PXC99_000707"
     CDS             complement(76..1671)
                     /locus_tag="PXC99_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5417187.1"
                     /translation="MRLSQLSLSVLLLSASSLVAAAPVNTLINCVATPPMKLSPAITN
                     DANDFNASSQQIYNRLLAFKAGELTVEPSLAERWEISDDGLSYTFHLRKDVKFHSNKQ
                     FTPTRTLNADDVVFSFQRQMDLNHPYHKVSDGTYFYYHWMNLPKILKTVEKVDDYTVK
                     ITLQQPNAPFLTTLAMDFLSIYSKEYADKLLAEGKPELLDQAPIGTGPFVFQAYQTDQ
                     AVRYVANPDYFQGKAKFEKLIFSITPDAGTRYAKLKAGECDVIDFPNISDIAQMKQDP
                     KVNLLQRDGLNLAYIGLNSTKPALNNAKVRQALHYATDKKAIVEAVYQGGGTVASNPF
                     PDSVLGYNPNLPQYEFNLEKAKALLTEAGFADGFETEIWVQPVVRPSNPNPRRTAEII
                     QADWAKIGVKAKLVTHEWADFNKRTREGEFSTGTYGWTSRNGDPDNFLFPLLSKSNIP
                     GTNYGRWTDEKFEQLLAQAVQTQNRDERAKLYQQAVEIANEQTPFIPLAHAINYVPLS
                     KRVQGFVQNPFGYTPFYGVSLSE"
     gene            1820..2260
                     /gene="mioC"
                     /locus_tag="PXC99_000708"
     CDS             1820..2260
                     /gene="mioC"
                     /locus_tag="PXC99_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein MioC"
                     /protein_id="HDL5417188.1"
                     /translation="MTSICIITGSTLGGAEYVADHINEVLSEQGFEVELFNQATLADI
                     EGKTNLIIVTSTHGAGELPENIQQLFDDLANSSADFSSMKFGVIGLGSSDYDTFCNAV
                     NIVEEALKAKGASQVCESLRIDVMNNFDHDGSAEEWLPSFVEQL"
     gene            2272..2439
                     /locus_tag="PXC99_000709"
     CDS             2272..2439
                     /locus_tag="PXC99_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1232 domain-containing protein"
                     /protein_id="HDL5417189.1"
                     /translation="MNKISANKAKWIKIAIILIYMFSPVDILPEAILGPFGLVDDAAA
                     LMLLIKTILEK"
     gene            complement(2528..3001)
                     /gene="asnC"
                     /locus_tag="PXC99_000710"
     CDS             complement(2528..3001)
                     /gene="asnC"
                     /locus_tag="PXC99_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator AsnC"
                     /protein_id="HDL5417190.1"
                     /translation="MYSKNTTKSEIDKLDQKILRWLIKDARTPYAEMAKVFGVSAATI
                     HVRVEKMRQAGIIESTKIVVDERKVGYDVCCFIGIILKSAKDYDKVIAKLSEFNEVVE
                     AYYTTGNYSIFIKVMTHTIEELHSVLAGKIQSIDEIQSTETLISLQNPISRDILP"
     gene            3202..4194
                     /locus_tag="PXC99_000711"
     CDS             3202..4194
                     /locus_tag="PXC99_000711"
                     /EC_number="6.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--ammonia ligase"
                     /protein_id="HDL5417191.1"
                     /translation="MKKSFILQQQEISFVKNTFTQYLIDKLGIIEVQGPILSEVGNGM
                     QDNLSGIEKAVKVNVKCIPSATYEVVHSLAKWKRHTLARFGFKEGEGLFVHMKALRPD
                     EDSLDRTHSVYVDQWDWEKVIPEGRRNFDFLKETVNEIYKAIRLTELAVEARFDIPSV
                     LPKQITFVHSEDLVQRYPNMTSKERENAICKECGAVFLIGIGGKLSDGKPHDGRAPDY
                     DDWTTESEQGYKGLNGDILVWNEELGTAFELSSMGIRVDETALRLQVALTGDEDRLEM
                     DWHKDLLAGRLPLSIGGGIGQSRLVMFLLRKKHIGEVQSSVWPKAVFEEFENIL"
     gene            complement(4318..4737)
                     /gene="atpC"
                     /locus_tag="PXC99_000712"
     CDS             complement(4318..4737)
                     /gene="atpC"
                     /locus_tag="PXC99_000712"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HDL5417192.1"
                     /translation="MASQFELTVVSAERKIFEGTVTSVRVSGTDGELGVYAGHAPLLT
                     AIKPGMVKFTLADGKEEFIYVSGGFLEVQPTVVTVLADTAIRGEELDEQRILAAKRKV
                     EETLSKTSDADMTAKLAREIAKLRVYELTKTKLANKR"
     gene            complement(4765..6138)
                     /gene="atpD"
                     /locus_tag="PXC99_000713"
     CDS             complement(4765..6138)
                     /gene="atpD"
                     /locus_tag="PXC99_000713"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011978979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HDL5417193.1"
                     /translation="MATGKIVQIIGAVIDVEFPQDAVPKVYDALKVESGLTLEVQQQL
                     GGGVVRCIALGSSDGLKRGLKVENTNKAIEVPVGTKTLGRIMNVLGEPIDEAGPIGEE
                     ERWTIHRAAPSYEEQANSTELLETGIKVIDLVAPFAKGGKVGLFGGAGVGKTVNMMEL
                     IRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVA
                     LTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVL
                     QERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRNIASLGIYPAVDP
                     LDSTSRQLDPLVVGEEHYNVARGVQGTLQRYKELKDIIAILGMDELSEDDKRLVARAR
                     KIERFLSQPFHVAEVFNGVPGKFVPLKETIRGFKGILEGEYDHIPEQAFYMAGSIDEV
                     VERAKQM"
     gene            complement(6159..7025)
                     /gene="atpG"
                     /locus_tag="PXC99_000714"
     CDS             complement(6159..7025)
                     /gene="atpG"
                     /locus_tag="PXC99_000714"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HDL5417194.1"
                     /translation="MAGAKEIRTKIASVRNTQKITKAMEMVAASKMRKTQERMAASRP
                     YAESIRKAISHIAKGNIEYKHPFLTPRPVKKVGYLVVSTDRGLCGGLNINLFKTVLHE
                     LKEKDDQGVKSRLAVVGNKGISFFNPMGLEIKGHINGLGDTPAMEDLVGIVNGMVNAY
                     REGEIDEVYVVYNRFINTMSQKPTVQQLLPLPALENDSLEQTGSWDYLYEPNPQALLD
                     SLLVRYLESQVYQAVVDNLASEQAARMVAMKAATDNAGNLINELQLVYNKARQASITN
                     ELNEIVAGAAAI"
     gene            complement(7051..8592)
                     /gene="atpA"
                     /locus_tag="PXC99_000715"
     CDS             complement(7051..8592)
                     /gene="atpA"
                     /locus_tag="PXC99_000715"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001176751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HDL5417195.1"
                     /translation="MQLNSTEISELIKKRIAQFNVVSEAQSTGTIVSVSDGVIRIHGL
                     SDVMQGEMIALPGNRYAIALNLERDSVGAVVMGPYADLAEGMQVQCTGRILEVPVGRG
                     LLGRVVNTLGQPIDGKGEIQNDGFSPIEVIAPGVIDRQSVDQPVQTGYKAVDSMVPIG
                     RGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTIANVVRKLEEHGAL
                     ANTIVVVASASESAALQYLAPYAGCAMGEYFRDRGEDALIVYDDLSKQAVAYRQISLL
                     LRRPPGREAFPGDVFYLHSRLLERASRVNADYVERFTNGAVKGQTGSLTALPIIETQA
                     GDVSAFVPTNVISITDGQIFLESGLFNAGIRPAVNPGISVSRVGGSAQTKLVKKLAGG
                     IRTALAQYRELAAFAQFASDLDEATRKQLSHGQKVTELLKQKQFEPMSVAQLGLSLAA
                     AEYGYLDDIPVERVGSFEANLLAYAQSNYGEFMQELSKSGNFNDEIKDKLNEILSGFK
                     KNSAW"
     gene            complement(8605..9138)
                     /gene="atpH"
                     /locus_tag="PXC99_000716"
     CDS             complement(8605..9138)
                     /gene="atpH"
                     /locus_tag="PXC99_000716"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HDL5417196.1"
                     /translation="MSELSTVARPYAKAAFDFALEQGQLEQWQQMLTFSAAVANDEQV
                     ASFLNSSLASGQISETFIKICGEQLDQYGQNFIRVMADNKRLAVLPAVLNAFLELRAE
                     QESIKDVEVVSADKLTDAQEAKIANAMEKRLGTKVRITSSIDSSLIAGVIIRYDDVVI
                     DGSSRGQLNRLSQELSL"
     gene            complement(9152..9622)
                     /gene="atpF"
                     /locus_tag="PXC99_000717"
     CDS             complement(9152..9622)
                     /gene="atpF"
                     /locus_tag="PXC99_000717"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HDL5417197.1"
                     /translation="MNLNATLIGQLIAFALFVAFCMKFVWPPLIRVIEERQANIASAL
                     ASAEKAKQEQADSKAAADQEILRAKEEAQNIIDLATKRRNEILESVQAEAEVERQRII
                     EQGYAEVESERKRVQEELRQKVAALAIAGAEKIVGRSVDAAANNDIIDKLVAEL"
     gene            complement(9683..9937)
                     /gene="atpE"
                     /locus_tag="PXC99_000718"
     CDS             complement(9683..9937)
                     /gene="atpE"
                     /locus_tag="PXC99_000718"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HDL5417198.1"
                     /translation="MESVITATIIGASILLAFAALGTAIGFAILGGKFLESSARQPEL
                     ASSLQTKMFIVAGLLDAIAMIAVGISLLFIFANPFIDLLK"
     gene            complement(10055..10843)
                     /gene="atpB"
                     /locus_tag="PXC99_000719"
     CDS             complement(10055..10843)
                     /gene="atpB"
                     /locus_tag="PXC99_000719"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HDL5417199.1"
                     /translation="MAGTTAEYISHHLSFLSTGEGFWAVHLDTLFFSLVAGAIFLWVF
                     SRVAKNATTGVPGKLQCFVEIVIEWVNGLVKDNFHGPRNVIAPLALTIFCWVFIMNAI
                     DLIPVDFLPQLANLFGIHYLRAVPTADISATLGMSICVFALILFYTVKSKGFGGLVKE
                     YTLHPFNHWAFIPVNFILETVTLLAKPISLAFRLFGNMYAGELIFILIAVMYMADNFA
                     LQALGIPLHLVWAIFHILVITLQAFIFMMLTIVYLSIAYNKADH"
     gene            complement(10866..11249)
                     /locus_tag="PXC99_000720"
     CDS             complement(10866..11249)
                     /locus_tag="PXC99_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit I"
                     /protein_id="HDL5417200.1"
                     /translation="MSAVINRAKSQYKQALKVEFFLLCVFALGVSLWKMNFNFSFLGG
                     ALASFLPHLVFVYWVFFKKSAKNQSKMTAFYRGEGMKWLVTIILVIGCFKLIPALDVV
                     LFFVGYFIALFLNNMIPFVLSKHHH"
     gene            11717..12850
                     /gene="carA"
                     /locus_tag="PXC99_000721"
     CDS             11717..12850
                     /gene="carA"
                     /locus_tag="PXC99_000721"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HDL5417201.1"
                     /translation="MFKPAILVLTDGSVFSGKSIGADGHTIGEVVFNTAMTGYQEILT
                     DPSYTKQIVTLTYPHIGNTGINLEDKESPNVCASGLIIRDLPLLHSNFRASSSLSDYL
                     IQQNIVAIADIDTRRLTRILREKGAQAGCILVGDATEENIANALAFANSFGSMAGKDL
                     AQSVTCNELYKWTDGEWQLGKGYVPQQQTEFHVVAYDYGVKHNILRMLAERGCRLTVV
                     PAKTSAEAVLALNPDGIFLSNGPGDPEPCDYAITAIRKLLETQKPIFGICLGHQLLGL
                     AAGGKTKKMVFGHHGANHPVQDLDSQKVLITSQNHGFEVDESSLPSNVRVTHRSLFDG
                     TVQGIELTDRPAFSFQGHPEASPGPNDVAYLFDRFVSEMKKVK"
     gene            12953..16159
                     /gene="carB"
                     /locus_tag="PXC99_000722"
     CDS             12953..16159
                     /gene="carB"
                     /locus_tag="PXC99_000722"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HDL5417202.1"
                     /translation="MPKRTDINTILIIGAGPIVIGQACEFDYSGAQACKALREEGYKV
                     VLVNSNPATIMTDPNMADVTYIEPIEWKTVEKIIEKERPDAILPTMGGQTALNCALDL
                     SKNGVLKKYNVELIGATEDAIDKAEDRGRFKEAMTKIGLNTPKSFVCHSFEEALAAQE
                     QVGFPTLIRPSFTMGGSGGGIAYNRDEFIAICERGFEASPTHELLIEQSVLGWKEYEM
                     EVVRDRADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIG
                     VDTGGSNVQFAINPANGEMIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLNE
                     LRNDITGGLIPASFEPTLDYVVTKIPRFAFEKFANADDRLTTQMKSVGEVMAMGRTFQ
                     ESLQKALRGLETGICGFNLLSEEPEKIRRELANPGPNRILYVADAFGAGFSLEEVHHY
                     SKIDPWFLVQIQDLVLEELALEKKQFSDLDANEIRRLKRKGFSDKRIAQLTKVSEKMV
                     RDYRHTYAILPVYKRVDTCAAEFASDTAYLYSTYEEECEAKPSDRKKVMILGGGPNRI
                     GQGIEFDYCCVHASLALREAGYETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIV
                     RVENPWGVIVHYGGQTPLKLANALSDAGVNIIGTSADSIDAAEDRERFQQILNTLGLK
                     QPANRTARNALEAVALANEVGYPLVVRPSYVLGGRAMQIVYNDEELNRYMREAVSVSN
                     DSPILLDHFLNNAIEVDVDCICDGENVLIGGIMQHVEQAGIHSGDSACSLPAYSLSGH
                     VLDEIRKQTNAMAFALGVKGLMNVQFAVQNEVVYVLEVNPRASRTVPFVSKATGRPLA
                     KIAARVMAGETLADLNALEEIIPSKFFVKEAVFPFIKFPGVDTILGPEMRSTGEVMGI
                     GNTFAEAFFKAQLGAGERIPKVGKVFMSVIEEHKPALIYIAKRFQEQGYGLCATFGTA
                     NFLRQHGIAVQTVNKVREGRPHIVDAIKNGEIALVINTVSGEPEVIADSHSIRRTALQ
                     QRVPIYTTLAGADAISYGVKHINEFDVYSVQELEQKAN"
     gene            complement(16234..17025)
                     /locus_tag="PXC99_000723"
                     /pseudo
     CDS             complement(16234..17025)
                     /locus_tag="PXC99_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072249.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose isomerase"
     gene            17228..18226
                     /gene="yiaK"
                     /locus_tag="PXC99_000724"
     CDS             17228..18226
                     /gene="yiaK"
                     /locus_tag="PXC99_000724"
                     /EC_number="1.1.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydro-L-gulonate 2-dehydrogenase"
                     /protein_id="HDL5417203.1"
                     /translation="MRVSYEELKAQFKRVLLARNVREEIAEECATVFADTTQAGAYSH
                     GVNRFPRFIQQLENGDIVPEAVPTKVLSLGAIEQWDAHQAIGNLTAKKMMDRAMELAS
                     ENGIGVVALRNANHWMRGGSYGWQAAEKGYIGICWTNALAVMPPWGAKECRIGTNPLI
                     IAVPTNPITMVDMSCSMYSYGMLEVHRLAGRQTFVDAGFDDDGNPTRDPATVEKNLRL
                     MPMGFWKGSGLSIVLDMIATLLSNGESTAAVTEDKDDEYCVSQVYIAIEVDRLIDGKT
                     KDEKLNRIMEYVKTAERADPDVAVRLPGHEFTQILADNKANGIPVDDTVWAKLQAL"
     gene            18351..18716
                     /locus_tag="PXC99_000725"
     CDS             18351..18716
                     /locus_tag="PXC99_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HDL5417204.1"
                     /translation="MFFGHISQVKANRYPPAIQIALNYLKNTDFDAMEAGVYELKGRQ
                     IYVQVLDLNTKSKHEFQPEVHRNYLDVQYLHRGKEIMAAAVDTGTNPIAMEYNPERDI
                     QYYQSVANENEFRCVEGNF"
     gene            18780..19259
                     /locus_tag="PXC99_000726"
     CDS             18780..19259
                     /locus_tag="PXC99_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HDL5417205.1"
                     /translation="MKALAQLVGKLLEILVVVILSAMSILVFVNVVLRYGFNSSISVT
                     EEVSRYMFVWLAFLGAVLAFSENQHVKVTMLTDKLSPTARNILSVVTDLAMLFCCYLI
                     VDGSWIQFNLNLNNFAPISGLPQGITFLASTVAGVLIGLLIIARIVATVGVIAKGEK"
     gene            19260..20537
                     /locus_tag="PXC99_000727"
     CDS             19260..20537
                     /locus_tag="PXC99_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017806296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HDL5417206.1"
                     /translation="MTVVIFLSVLLGSILLGIPVAFALLVCGVALMLHLDLFDAQILA
                     QQIVSGADSFSLMAIPFFILAGEIMNEGGLSKRIIDLPMKLVGHKRGGLGFVAILAAM
                     IMASLSGSAVADTAAVVAMLLPMMKTTGYPIDRSAGLIGTAGIIAPIIPPSIPFIVFG
                     VASGVSITKLFLAGIFPGIMMGICLAALWWWQAKRLDLMTFSKATKEELCISFKNSIW
                     ALLLPVIIIGGFRSGMFTPTEAGAVATFYALIVSLFVYREMKFKDLYKVVLAAAKTTA
                     VVMFLVAAANVTGWLITVAELPMMLTELLEPLIESPTTLLLVIMLAVFIIGMVMDLTP
                     TVLILTPVLMPLVEEAGIDPVYFGVLFILNTSIGLITPPVGNVLNVITGVSKLPFDQA
                     AKGVMPYLVMMICLLLLFVFFPSLVLVPLSWMQ"
     gene            20640..21626
                     /locus_tag="PXC99_000728"
     CDS             20640..21626
                     /locus_tag="PXC99_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL5417207.1"
                     /translation="MKLFNLKTLFALVAGVAVMSGSAMAETSLRFGYEAPRSDTQHIA
                     AKKFDELLAAKTKGEIKLKLFPDSTLGNAQTMISGVRGGTIDIEMSGSPNFTGLEPKL
                     NVIDIPFIFKDREHVYKVLDGEVGQGLLKDLEAQGLKGLAFWDVGFRAFSNSKHPVTK
                     PEDIKGLKVRTNQNPMYIQAFTLLGGNPVPMPLSELYTALETRAVDAQEHPIGIFWSA
                     KLFEVQKHLSLTNHGYTPLIVVMNKAKFDGLAPELQTALVEAAKEAGQFQRDLNVKNE
                     KEIIEKLRKQGIEVIEQVDNAPFKAAIEAEVRKAFVEKHGDELLKKVDALAQ"
     gene            21700..22683
                     /locus_tag="PXC99_000729"
     CDS             21700..22683
                     /locus_tag="PXC99_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL5417208.1"
                     /translation="MKLFNLKTLAAFVAGFALFSTAQAETSFRFAYEAPRSDTQHIAA
                     KKFNDLLQEKSQKGLKLSLFPDSTLGNAQTAISGVRGGTIDIAMSSSSNFTGLEPKLN
                     VIDIPFIFKDRDHAYKALDGEIGQGLLTALEAHGLKGLAFWEVGFRAFSNSKHPITKP
                     EDIKGLKIRTNQNPMYIQAFSILGANPVPMPLSKLYTALETKAVDAQEHPIGIFWSAK
                     LYEVQKYFSFTNHGYTPLIVAINKAKFDALPAEQQTALVEAAKEAGKYQRQLNLENEQ
                     KIIDSLKKAGIEFVDNLDTTPFKDAVSAETRKAFIEKNGDGLVKAIDALAK"
     gene            22814..24298
                     /locus_tag="PXC99_000730"
     CDS             22814..24298
                     /locus_tag="PXC99_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL5417209.1"
                     /translation="MQHIIKRFGSHTAVNDVSLDIHSGEIVALLGENGAGKSTLIKIL
                     AGIYDRDEGDILFHNQKIQSAHAIEKGNKKPIAFIHQDLGLIEWMTIAENMAFVMGFP
                     RKFGLIDWAKVREQSQKALDFVGIKLSADTRVFDLSRTEKALLAIARAIAVNAEILVL
                     DEPTASLPASDVEHLFTVLNRLRSQGVGMIYVTHRLDEVIAISDRILVMRDGFPVAEG
                     QTKLYDVKGLVKAIVGEESRGRQRVDLPTDTPEILSLQNVVVGDTGPVNFRLHKGEMI
                     ALAGLRGAGQEEIGRLLFGERTLDKGEIQLDKRSYSAKDPQDAIAKGVALVAGDRTRE
                     SVFMSMTTSENLFINPVLSGHSPLKRYSRREEWGESWYKFQLFDIRPKNLFIDASALS
                     GGNQQKIVLARWMHLNTPVLILEDPTAGVDVGARAEIYDLLNKALAEGVAIIVISTDF
                     EEIAHLCNRALVFNRGEIAGELLNEEVTFANLLALASDSQSKKQ"
     gene            24493..25539
                     /locus_tag="PXC99_000731"
     CDS             24493..25539
                     /locus_tag="PXC99_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5417210.1"
                     /translation="MAQTNIKSTALEQPVSIARDGFMAWFSQMSTRYGLLWLCVLLVI
                     IFSLTTESFASMLTLNAILESKSKIALLALAATTTMIVGKIDLNVGFGIVLWHILVIT
                     LQVQYGFSWYMAILIVLVIAALYGLLNGILVALADIDSFVATLGSGTVLYAVALWHSG
                     GRQIVGDLPDEFIALNSTEIFGIPISAFYVLAVAIVMWLVTEHTPTGRCMYAVGGNPT
                     AARLNGINIKKYTIVPFIVSSVITAFTGVLISAQQGVGQASVGMDYLLPALVGAFLGS
                     TTIRPGRINVWGTVVGIAILAIGISGIQQFGGAFWVEPLFNGATLLLSITIAGYAQRK
                     RLLNQKAVQKKSTN"
     gene            25552..26661
                     /locus_tag="PXC99_000732"
     CDS             25552..26661
                     /locus_tag="PXC99_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL5417211.1"
                     /translation="MKKAFRTTLTAIATLTAIAFGNNAFANDDPFVQEAKQLVAAATA
                     KQEKWDGPTTGPQLQKEKTVIFIASDMKNGGVLGVIDGMKEAVGVTGWKLDVLDGAGT
                     VNNQLAALNQAIARKPDAIVIGGWNPNVAKIPLQKATKNGIKLAAWHATPEPGAIDKY
                     GIFYNVTSDSDEIARLSAMLAVAESNGKAKAIILTDSLYEIALRKANVMKEVIEKCKE
                     CKVLEFIDTPLADTSSRMPNLTFSLLQKYGDDLEYALAINDLYFDFMAPSLRTAGKDK
                     PFSISAGDGSVTAYQRIRNGDKQFATVPEPLNLHGWQLVDELNRAFANEKPSGYITPA
                     HLVTKENVAFDGGENNLYAPQNGYKGAYKAIWGVK"
     gene            26766..27656
                     /locus_tag="PXC99_000733"
     CDS             26766..27656
                     /locus_tag="PXC99_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HDL5417212.1"
                     /translation="MSNKFIPKISNPRFNELVGNTFELEELFDKAIWAEGPAWSKPQQ
                     ALYFSDVKGCTMYRWTEQDGTQVFRQPSYFSNGNAFDANDNLITCEHGNRGISLTTPS
                     GEYRFLVGQLDGKRLNSPNDVVVKSDGIIWFTDPPYGILSDNEGKQSPSEIIGCYIYC
                     YDPKTDKLNIATFNTMRPNGLAFSSDEKQLFVADMSSVEFDEDGLHHLVVFDVDGNKL
                     KNRRDVAEISPGIPDGFRIKQNGVIFCSCEEGIIALLPDGTELGRFVLGKLTSNCSFG
                     DDEQTLFITCSNSVYRLTIK"
     gene            27728..29197
                     /locus_tag="PXC99_000734"
     CDS             27728..29197
                     /locus_tag="PXC99_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HDL5417213.1"
                     /translation="MDNKMNYTLGIDCGGTFIKAALFDTQGNIQALHRENVSVISEQA
                     GYAERDMSQLWAICAEVVRSTIEKSGVNPADIKAVGISAQGKGAFLLDKQNRPLGRAI
                     LSSDQRSLEIVKQWQAEGIPQQLYPITRQTLWTGHPVSILKWVQQNEPERYAQIGAVL
                     MSHDYLRFCLTGELHCEETNISESNLYNMEKGEYDQQLADLLGMPDVLEKLPPVIEPN
                     KISGYVTENAAKLTGLAVGTPIVGGLFDVVSTARCANLDDETKLNAVLGTWSVVSGIT
                     DHIDASQSLPFVYGRYAEAGKFIVHEASPTSAGNLEWFVNQWKLDYVKINQAVAQLPP
                     AASSVLFVPFLYGSNAGLGMQAGFYGMQAHHTQAHLLQAIYEGVLFSLMSHLNRMFIR
                     FPKADVLRVTGGPVKSKVWMQMLADLTGMRLEIPQMEETGCLGAALMAMQGVGLDISQ
                     VQALNNEMQVFEPNPENYAAYQTKYQRYQKLTEALNTMI"
BASE COUNT         8462 a         6393 c         6319 g         8147 t
ORIGIN      
        1 ttctaaaaga aaagcagtct attctctacc acattttgca aaaaagtggc aaaaatagac
       61 cgcttgtatg gcatatcact ccgataaact caccccataa aatggcgtgt agccaaacgg
      121 attttgcaca aaaccttgca cccgtttgct gagtggtaca taattgatag cgtgagccag
      181 cggaataaat ggcgtttgtt cgttggcaat ttccaccgct tgttgataga gcttcgcccg
      241 ctcgtcacgg ttttgggttt gtacagcttg agctaataac tgctcaaatt tctcatccgt
      301 ccaacgccca taatttgttc ccggaatatt agatttgctt aataaaggga agaggaaatt
      361 atcaggatca ccattacggc ttgtccaacc ataagtgccg gtagagaact cgccttcacg
      421 ggtgcgtttg ttaaaatccg cccattcgtg ggtcactaat ttcgctttca ccccgatttt
      481 cgcccaatcc gcctgaataa tttcagccgt tcgacgtggg tttgggttag aagggcgcac
      541 taccggttgt acccaaattt ccgtttcaaa tccatcggca aagccggctt ctgttaatag
      601 ggctttggct ttttcaaggt taaattcata ttgcggtaaa tttggattat agcccaacac
      661 cgaatcaggg aacggattac ttgccaccgt gccaccgcct tgataaacag cctcgacaat
      721 cgctttctta tcggttgcat aatgcaaggc ttggcgaact ttggcgttat ttaatgccgg
      781 tttggtgctg tttaagccga tataagctaa attcagcccg tctctctgta acaaattcac
      841 cttcggatct tgtttcattt gggcaatatc ggaaatattc gggaaatcaa tcacatcgca
      901 ttcacccgct ttcagtttgg cataacgagt gcccgcatca ggggtaatac taaaaatcag
      961 tttctcaaat tttgctttac cttggaaata atccgggttc gcaacataac gcaccgcttg
     1021 atcggtttga taggcttgga acacaaaagg ccctgtgccg atcggggctt gatccaataa
     1081 ctccggcttg ccttccgcca gcaatttatc cgcatattct tttgaataaa tcgacaagaa
     1141 atccatcgct aaggttgtca gaaaaggagc attaggttgc tgtaaggtga ttttaacagt
     1201 gtaatcgtcc actttttcca ctgtttttaa aatcttcggc aaattcatcc aatggtaata
     1261 gaaataagta ccgtcagaga ccttatggta agggtggttt aaatccatct ggcgttggaa
     1321 cgagaacact acatcatccg cattcagcgt tcgagttggc gtaaattgtt tattggaatg
     1381 aaatttcacg tctttacgta aatggaatgt gtaacttaag ccatcgtcac tgatttccca
     1441 acgttccgcc aaactcggct caaccgttag ttcaccggct ttaaacgcta ataagcgatt
     1501 ataaatttgt tgtgaactgg cgttgaaatc attggcatca ttagtaattg caggactaag
     1561 tttcatcggt ggagttgcca cgcaattaat caacgtattt accggagctg ctgccaccaa
     1621 actgctggca cttaagagta aaacagaaag agataattga gaaagacgca taaagactcc
     1681 ttaacatttt ctactaactt actcggcatt aacgtatttt caaaataact aaaggttata
     1741 atttataatc agaataatca gttgcaaacc aatgattctt ggctagaata ttggcagttt
     1801 tttaaacgag agatttacta tgacatcaat ttgtatcatc accggcagca ccttaggcgg
     1861 tgcggaatat gttgccgatc acattaatga ggtattaagc gaacaaggtt ttgaagtgga
     1921 actgtttaac caagccaccc ttgccgatat tgagggcaaa accaatctga ttatcgttac
     1981 ctctacccac ggagccggcg agttacccga aaatatccaa cagctatttg acgatttagc
     2041 aaatagctcg gctgatttca gcagtatgaa atttggtgta atcggtttag gtagctccga
     2101 ctatgacacc ttctgcaatg cagtaaatat tgttgaagaa gctctcaaag cgaaaggggc
     2161 aagccaagtt tgcgaatcac tgagaattga tgtaatgaat aatttcgacc acgatggcag
     2221 tgctgaagaa tggttaccat catttgttga acaattataa cttaagtatc aatgaacaaa
     2281 atcagtgcaa ataaggcaaa gtggattaaa atcgctatta tcttaatcta tatgttcagc
     2341 cctgtagata ttctacccga agcgatttta ggcccattcg gtttggttga tgatgccgcc
     2401 gcattaatgc tattgattaa gactattttg gaaaaatagg catagtagac aaaatagttg
     2461 caaaaaacca aaacaaaacg accgcttgta acccaataca agtggtctta tcttttactt
     2521 aattctttta agggagaata tctcttgaaa taggattttg aagtgaaata agcgtttctg
     2581 ttgactgaat ttcatcaata gactgaattt ttcctgctaa taccgaatgc aactcttcga
     2641 tggtatgggt cattacttta ataaaaatag aataattacc agtggtatag tacgcctcaa
     2701 caacttcatt aaattcacta agtttagcaa ttactttatc ataatctttg gctgatttta
     2761 aaataatgcc aataaagcaa cacacgtcat acccaacctt acgctcgtcc actacgattt
     2821 tggtagattc aataatgccg gcttggcgca ttttttcaac acggacatgg atagttgcgg
     2881 cactcacacc aaaaactttt gccatttccg cataaggcgt gcgagcatct ttaattagcc
     2941 aacgtaaaat tttttgatcc agcttatcaa tttccgattt agtcgtgttt ttactgtaca
     3001 ttttttctcc tcaaaatcaa actaattaga taagatttaa aaatattgca aatattttaa
     3061 atgaaattta tcacaaatgc ttttttattt gataaatatt gcatttttta gatatttctt
     3121 taaattagca ctcatcaatt cttaaatgca atcaagcacg agaaataaaa aatcaacatt
     3181 ctttaattag gaaagcaaac aatgaaaaaa tcttttattt tacagcaaca agaaatcagt
     3241 tttgttaaga acacatttac tcaatattta attgataaat taggcattat tgaagttcag
     3301 gggcctattt tgagcgaagt cggcaacggt atgcaagaca acctttccgg tatcgaaaaa
     3361 gcagtaaaag taaacgtaaa atgtattcca agcgctactt atgaagtggt tcattctctt
     3421 gcaaaatgga aacgccacac cttagctcgt tttggattta aagaaggaga agggttattt
     3481 gttcatatga aagctcttcg ccctgatgaa gattctttag atcgcacaca ctcggtatat
     3541 gttgaccaat gggactggga aaaagtcatt cctgaaggtc gccgcaactt cgatttctta
     3601 aaagaaacgg taaacgaaat ctataaagca attcgtttaa ccgaattagc ggtggaggct
     3661 cgtttcgata ttccatctgt attgcctaaa caaattactt tcgttcacag cgaagactta
     3721 gtgcaacgct atccgaatat gaccagcaaa gagcgtgaaa atgctatctg taaagagtgc
     3781 ggagcggtgt tcttaatcgg tatcggcggc aaattatcag acggtaaacc tcacgatgga
     3841 cgagctccgg actatgatga ctggacaacc gagtccgaac aaggctacaa aggcttaaac
     3901 ggcgatattt tagtttggaa cgaagaactc ggcacagcct ttgaactttc ctcaatgggt
     3961 attcgtgtag atgaaaccgc cttacgctta caagttgctt taactggcga cgaagaccgc
     4021 ctcgaaatgg attggcacaa agatttatta gccggcagac tcccgctttc tatcggcggc
     4081 ggtatcggtc aatctcgctt agtgatgttc ttactacgca aaaaacacat cggtgaggtg
     4141 caatccagtg tctggccaaa agcggtattt gaagagtttg agaatattct ttaataaaac
     4201 aaaaaagcga accttagggt tcgcttttgc tttctacaag cggtcttatt ttgcaaaaaa
     4261 tttactgttt ttaaccgctt gtaaaacaaa accccacttt cgtggggttt tttgatatta
     4321 acgtttattc gctaatttgg ttttagtgag ttcgtaaaca cgcagtttcg caatttctct
     4381 cgctaacttc gcggtcatat ccgcatcgct ggtttttgaa agtgtttctt ctactttgcg
     4441 ttttgcggca agaatacgct gttcgtctag ttcttcacca cgaattgcgg tatcagccaa
     4501 cactgttact acggtcggtt gtacttcaag gaaaccacct gaaacgtaga taaactcttc
     4561 tttgccgtca gctaaagtga atttaaccat tcccggttta attgcggtta ataacggtgc
     4621 atgccctgca tacaccccta attcaccatc tgtccctgaa acacgcacgc tggtaactgt
     4681 gccttcaaag attttacgtt ctgcactcac taccgtgagt tcaaattgag atgccatgtt
     4741 gttctccttt agtttagaac aaaattacat ctgttttgct ctttcaacca cttcgtcaat
     4801 tgaacccgcc atatagaacg cttgttccgg aatatggtcg tattcgcctt ctaaaatgcc
     4861 tttaaagcca cgaattgttt cttttaacgg tacgaatttg cccggtacgc cgttgaatac
     4921 ttccgcaacg tggaatggtt gtgaaaggaa acgttcgatt ttacgcgcac gagcaacaag
     4981 gcgtttgtcg tcttccgata attcatccat acccaaaatt gcaatgatgt cttttaactc
     5041 tttataacgt tgtaatgtac cttgtacacc acgagcaacg ttatagtgtt cctcaccaac
     5101 cacgagtgga tctaactgac gagaggttga gtcaagaggg tcaaccgccg ggtaaatacc
     5161 gagtgaagcg atattacggc ttaataccac cgttgagtct aagtgggcaa aggtagttgc
     5221 cggagacggg tcagttaagt catccgccgg aacatatacc gcttgcacag aggtaataga
     5281 gccggttttg gttgaggtaa tacgctcctg taatacgccc atctcttctg caagagtcgg
     5341 ctgataacct accgcagacg gcatacgacc taataacgca gatacttcgg taccagctaa
     5401 agtataacgg tagatgttat ccacgaagaa taatacgtca cgaccttcat cacggaattt
     5461 ttctgccatg gttaagccgg ttaatgccac acgcagacgg ttgcccggtg gttcgttcat
     5521 ttgaccgtaa accagcgata ctttgtctaa tacgttagag tctttcattt cgtggtagaa
     5581 gtcattaccc tcacgagtac gctcacctac accggcgaat accgagtaac cgctatgttc
     5641 gatagcgatg ttacggatta actccatcat atttacggtt ttacctacac ccgcaccacc
     5701 gaataagcca actttaccac ccttagcaaa tggagcaact aagtcgataa ctttgatacc
     5761 ggtctctaaa agctcggtgc tgttcgcttg ttcttcgtag cttggtgctg cacggtggat
     5821 tgtccaacgt tcttcttcac cgattgggcc tgcttcatca attggctcac ctaatacgtt
     5881 cataatacga ccgagtgttt ttgtaccaac cggtacttca atcgctttat tcgtattttc
     5941 aacttttaag ccacgtttta aaccatcaga tgaaccaagt gcgatacaac ggaccacacc
     6001 gccacctaat tgttgttgaa cttcaagggt taatcctgat tcaactttta atgcatcata
     6061 aacttttggt actgcatctt gcggaaactc aacatcgatt accgcaccga tgatctgtac
     6121 aatttttccc gttgccatta ccgttcctct attcattgtt aaattgctgc ggcacccgcg
     6181 acaatttcat ttaattcatt cgtaatactt gcttgacgag ctttgttata cactaactgt
     6241 aactcattaa tcagattacc tgcgttatcg gttgctgctt tcattgccac cattcgagca
     6301 gcctgttcag acgcaagatt atctaccact gcctgataaa cttgagattc taaataacga
     6361 accagtaagc tgtctaataa cgcttgtgga tttggttcat agagataatc ccaagaacca
     6421 gtttgctcta atgagtcatt ttccagtgca ggcaaaggaa gcaactgttg tactgtcggt
     6481 ttttgtgaca tcgtgtttat aaaacggtta tataccacat acacttcatc aatttcgcct
     6541 tcacggtagg catttaccat accattaaca ataccgacta aatcttccat tgccggtgta
     6601 tcacccaatc cattgatatg acctttaatc tctagcccca ttgggttaaa aaaggagatc
     6661 cctttatttc ccaccacagc aagtcgagac ttaacacctt ggtcatcttt ttctttcaat
     6721 tcatgtaaaa cggttttaaa taaattgata tttaagccac cacataaacc gcgatcggtt
     6781 gaaactacta aatagccaac tttttttacc ggacgtgggg tcaaaaatgg gtgtttatac
     6841 tcaatgttac ctttggcaat atggctaatt gccttgcgaa tactttcagc ataagggcga
     6901 gaagccgcca tacgctcttg ggttttacgc atttttgatg cggcaaccat ttccatcgct
     6961 ttggtaattt tttgtgtatt acgaacactt gcaattttgg ttcttatctc tttagcacct
     7021 gccatattat ttctccgcta aaaagttaga ttaccaagca ctgttctttt tgaaaccaga
     7081 taaaatctcg ttcaatttat ctttaatttc atcgttgaaa ttgccggatt ttgacagttc
     7141 ttgcataaac tcgccgtagt tactttgagc ataagctaat aagtttgctt caaatgagcc
     7201 aacacgctca accggaatat catctaagta accgtattca gctgctgcta atgataaacc
     7261 taattgtgca acagacatcg gctcgaattg tttttgtttc aacaattcag ttactttttg
     7321 accgtgtgaa agctgtttac gtgttgcttc atcaagatct gatgcgaact gggcaaatgc
     7381 cgctaattca cggtattgag caagtgcggt acggatacca ccggcaagct tcttaaccag
     7441 tttagtttgt gcagaaccac ctacacggga aaccgagata cccgggttta ccgcagggcg
     7501 aataccggca ttgaataagc ctgattctaa gaaaatctga ccatcggtaa ttgaaattac
     7561 gttagtcggt acgaaggctg aaacgtcacc tgcttgggtt tcgatgatcg gtaatgcggt
     7621 taaagaaccg gtttgacctt tcacagcacc gttagtgaaa cgttctacat agtctgcatt
     7681 tacacgagac gcacgctcta ataagcgaga gtgtagatag aacacatcac ccgggaatgc
     7741 ttcacgaccc ggtggacggc gtaataacaa tgaaatttga cggtaagcaa ctgcttgctt
     7801 agacaaatca tcgtaaacga tcaacgcatc ttcaccacgg tcacggaagt attcacccat
     7861 tgcacaacct gcataaggtg caagatattg taatgcagca gattcagacg cagaagccac
     7921 tacaacgata gtgttcgcta atgcaccgtg ttcttctaat ttacgcacca cgttggcgat
     7981 agttgatgcc ttttgaccga ttgcaacgta gatacattta atgcctgaat cacgttggtt
     8041 gatgatcgca tcaatcgcta atgcggtttt accggtttga cggtcaccta taatcaattc
     8101 acgctgacca cgaccgattg gtaccattga gtccaccgct ttgtaaccgg tttgaaccgg
     8161 ttgatcaacc gattgacggt cgataacgcc cggtgcgatc acttcgattg gtgagaaacc
     8221 gtcattttgg atttcgcctt taccatcgat tggctgacct aaggtattta caacacgacc
     8281 taataagcca cgaccaaccg gcacttctaa aatacgaccg gtacattgta cttgcatacc
     8341 ttctgctaaa tcggcataag gtcccattac aactgcacca acagaatctc tttctaagtt
     8401 taatgcaatc gcataacgat tgcccggtaa tgcaatcatt tcaccttgca ttacatcaga
     8461 taagccgtgg atacgaataa ccccgtcact taccgaaacg attgtccctg tgctttgagc
     8521 ttcactcacc acattaaact gggcaatacg ttttttaatc aattcactaa tttcagttga
     8581 atttagttgc attttttatt cctcttacaa gctcaactct tgactcaagc ggtttagctg
     8641 tccacgacta ctaccatcaa tcactacatc atcataacga atgatcacac ccgcaattaa
     8701 tgaactatct attgatgaag taatacgtac tttcgttccg agtcgctttt ccatcgcatt
     8761 ggcaattttt gcttcttgtg catctgttaa tttatctgca gaaacaacct caacatcttt
     8821 aattgattcc tgttctgctc ttaattctaa aaatgcattc aataccgcag gtaatactgc
     8881 taaacgcttg ttatcagcca ttacgcgaat gaaattttgc ccatattgat ctaattgttc
     8941 gccacaaatc ttgataaacg tctcagaaat ctgaccgctt gcaagtgatg agttaagaaa
     9001 actagctact tgctcatcgt tagcgacggc ggcagaaaaa gttaacatct gctgccattg
     9061 ttccaattga ccttgttcta aagcaaaatc gaaagccgct ttagcatagg ggcgagctac
     9121 tgtgcttaat tctgacatct gcccctccta gttatagttc cgcaactagc ttatcaataa
     9181 tatcgttgtt cgcagcggca tccaccgaac gacccacgat tttttctgca ccagcaatag
     9241 ccaatgcagc cactttttga cgaagctctt cttgaacgcg tttacgttcg ctttcaactt
     9301 ccgcgtaacc ctgttcaata atacgttgac gttccacttc agcttctgct tgtacagatt
     9361 ctaaaatttc attacgacgt tttgttgcta aatcaatgat attttgtgct tcttctttcg
     9421 ctctaaggat ttcttgatcc gcagccgctt tagaatcagc ttgttcttgt ttcgcttttt
     9481 cggcagaagc caatgcgcta gcaatatttg cctgacgctc ttctatcact cgaattagcg
     9541 gtggccatac aaacttcata cagaacgcaa caaaaagtgc gaacgcaatc agttgaccaa
     9601 ttagtgttgc atttaaattc acaacgccct cctaaaagcc ggtaaagtta ttcaactgaa
     9661 taacggttaa tcaaatcccg acttatttca ataaatcaat gaacgggttt gcgaagatga
     9721 atagtaatga aatacctaca gcgatcattg cgatagcatc taaaagacca gcaacgataa
     9781 acattttagt ttgtaagctt gatgctaatt ccggctgacg tgcagatgac tctaagaatt
     9841 tgccacctaa gatagcaaag ccgatagcag taccaagagc agcgaaagct aataaaattg
     9901 aagcaccaat aattgttgct gtgattactg attccataat gttctccatt agattgagga
     9961 attagcccga aggctgggtt gttgataaaa atacatatca agcggtcaat attttgcaaa
    10021 aatttgcgaa aaacctaccg cttgtaaggc tagtttaatg atccgctttg ttataagcga
    10081 tactcaaata aacaatcgtt agcatcataa aaataaaggc ttgaagcgta ataactaaaa
    10141 tatggaaaat cgcccaaacc aagtgtaatg gaatccccaa cgcctgtaga gcgaagttgt
    10201 ctgccatata cattactgca ataaggataa agattaactc acctgcatac atattaccga
    10261 ataaacggaa cgccaatgaa atcggttttg ccaaaagcgt taccgtttca agaataaagt
    10321 ttaccggaat gaatgcccag tggttaaacg ggtgtaacgt gtattctttc actaaaccgc
    10381 caaaaccttt cgatttcacc gtgtaaaata aaattaacgc aaatacacaa atagacatac
    10441 ccagtgttgc actaatatct gccgttggta ctgcacgcaa atagtgaata ccaaacagat
    10501 tggctaactg tggtaagaaa tcgaccggga taaggtcgat cgcattcata ataaacaccc
    10561 aacagaaaat cgttaatgct aatggtgcaa ttacattgcg aggtccgtgg aagttatcct
    10621 tcactaaacc gtttacccac tcaataacaa tctcaacaaa acattgcaat tttcccggaa
    10681 cgcccgttgt tgcatttttt gctacacgcg agaacaccca taaaaaaatc gcacctgcca
    10741 ctaaagagaa gaacagtgta tctaaatgca ctgcccaaaa gccttcacct gtcgataaaa
    10801 aactcaagtg atggctaata tattctgctg tcgttccagc cataacatat ccttttaaat
    10861 taaaattagt ggtgatgttt gcttaataca aacgggatca tattatttaa aaataatgcg
    10921 ataaaataac ccacgaaaaa caacacaaca tctagagcag ggataagttt aaaacagccg
    10981 atcaccaaaa taatagtaac caaccatttc attccttcac cacgatagaa agcggtcatt
    11041 tttgactgat tttttgcaga tttcttaaag aaaacccaat atacaaacac aagatgaggc
    11101 aaaaaactcg ctaaagcacc gcctagaaag gaaaaattaa aattcatttt ccataaagac
    11161 actccaagtg caaaaacgca caagagaaaa aattcaacct ttaatgcttg tttatattgt
    11221 gattttgctc tattgattac agctgacaca ttttatcctt tttgaataag taaaccacac
    11281 aatcaggcta ataattagcc actgttgaat caaagaaaat ccgtgctaaa ttatacttta
    11341 caaatgaatt gttgcaaccg aaaagcgaca caaaaacttg ttattcttca catttttgaa
    11401 aaaaaatttt atttacgttg catttttttg agtaaaacca tcaaaatcag ttaacaaaaa
    11461 aacaacaaat agaggtgtgt gtatttttct ctgtcacatt atttcaatat ttgataaatt
    11521 ccccttgctt aaaaatgaat aaaaattcat aataattgca tatattttca cttccgagta
    11581 gaaaatgaaa taaaaaaaga agaaagaaat aggcaaaata actaattttt acttgaatgc
    11641 aaacgtttgc ttgattaaac ttagtcgcct acttctaagg ctacacagat aaaatttgat
    11701 gattaggagt aaaacaatgt tcaaaccagc aattctggtt ctcactgacg gttctgtctt
    11761 ttccggcaaa tccattggtg ctgacggtca cactatcggt gaagtggtat ttaacactgc
    11821 gatgaccggt tatcaagaaa tccttaccga tccttcttat actaaacaaa tagtcaccct
    11881 gacttacccc cacattggca ataccggcat taatttagaa gataaagaat cccccaatgt
    11941 ttgtgcctcc ggcttaatta ttcgtgatct tcctcttctc catagcaact tccgtgcgtc
    12001 ctcctcactt tcagattatc tcattcaaca aaacattgtc gctattgccg atattgatac
    12061 ccgccgttta acccgaattt tacgcgaaaa aggggcacaa gccggttgta ttttagtagg
    12121 cgatgccaca gaagagaata ttgctaacgc tttggcattt gccaacagtt tcggttctat
    12181 ggctgggaaa gatttggctc aaagtgtcac ctgcaatgaa ttatataaat ggacagatgg
    12241 tgaatggcaa ttaggtaaag gttatgtacc gcaacaacaa accgagttcc acgtagttgc
    12301 ctatgattac ggtgtaaaac acaacatttt gcgaatgctt gccgaacgag gctgtcgctt
    12361 aaccgttgtg ccggcaaaaa cctctgctga agctgtgctt gcgttaaatc cggacggtat
    12421 tttcctttct aacggcccgg gggacccgga gccgtgcgat tatgccatta ccgcaatccg
    12481 aaaattattg gaaacgcaaa aacccatttt cggcatttgc ttagggcatc aacttttagg
    12541 tttagcggca ggcggtaaaa ccaaaaaaat ggtgtttggt catcacggag ctaatcaccc
    12601 ggtacaagat ttagacagcc aaaaagtgct catcaccagc caaaaccacg gttttgaagt
    12661 agatgaatcc agcttaccat ctaatgtgcg agtgactcac cgctcactgt ttgacggcac
    12721 ggtgcagggg attgaactca ctgatagacc ggcgttttcg ttccaaggtc acccggaagc
    12781 cagcccgggg ccgaatgatg ttgcctattt atttgaccga tttgtcagtg agatgaaaaa
    12841 agtgaagtaa ggacgtacct atgtgtgtcc atcaagcggt cgaaatttgc aaaaaactta
    12901 ccaaaaatga ccgcttgtag cctgaaataa acgagataaa agagagccca aaatgccaaa
    12961 aagaacagac ataaacacta tcctaattat cggtgccggt ccgattgtga tcggtcaagc
    13021 gtgtgaattt gactactccg gagcccaagc gtgcaaagcg ttgcgtgaag aagggtataa
    13081 agtggtgttg gtgaactcca accctgcaac cattatgacc gacccgaata tggcagatgt
    13141 gacttacatt gagccgattg aatggaaaac ggttgaaaaa atcattgaaa aagaacgccc
    13201 tgatgccatt ttaccgacta tgggcgggca gacagcgttg aactgtgcct tagatctttc
    13261 gaaaaacggt gtgctgaaaa aatataatgt agagctgatc ggagctaccg aagacgcgat
    13321 tgataaagcc gaagatcgtg gtcgttttaa agaagcaatg actaaaatcg gcttgaatac
    13381 gccaaaatca ttcgtttgcc acagttttga agaggcctta gcagcacaag agcaggttgg
    13441 ctttccaacc ctgattcgcc cctctttcac gatgggaggc tccggcggtg gtattgctta
    13501 taatcgagat gaatttatcg ccatctgcga acgtggtttt gaagcctcgc ctactcacga
    13561 attactgatt gaacaatccg tactaggctg gaaagagtat gaaatggaag ttgtgcgtga
    13621 ccgtgccgat aactgcatta tcgtctgctc gattgaaaac ttcgacccga tgggtgtaca
    13681 caccggcgac tccattaccg ttgctccggc acaaacgcta accgataaag agtatcaaat
    13741 tatgcgtaac gcttcgctgg cggtattgcg tgagatcggc gtggacaccg gcggttcaaa
    13801 tgtgcaattt gcgattaacc ctgcaaacgg cgagatgatc gtcattgaaa tgaaccctcg
    13861 tgtgagccgt tcttctgcac tcgcatctaa agccaccggc ttcccgattg ccaaagttgc
    13921 ggcgaaattg gctgtaggct acacactcaa cgaattgcgt aacgacatca ccggagggct
    13981 gattccggct tcattcgagc cgactttaga ttatgttgtg accaaaattc cacgcttcgc
    14041 ctttgaaaaa tttgccaatg cagacgaccg attaaccact caaatgaaat cggtaggcga
    14101 agtaatggca atgggaagaa ccttccaaga gagtttacaa aaagccttgc gaggcttgga
    14161 aaccggcatt tgcggcttta acttgctttc cgaagagcct gaaaaaatcc gccgtgaact
    14221 tgccaacccc ggaccaaacc gtattttgta tgttgccgat gcctttggag caggcttttc
    14281 attggaagaa gttcaccact attctaaaat cgacccgtgg ttcttggtgc aaattcaaga
    14341 cttagtactt gaagaattag cgttagagaa aaaacagttt agcgatctag atgctaacga
    14401 aatccgccgc ttaaaacgca aaggcttctc agacaaacgt atcgcacagc ttaccaaagt
    14461 cagcgaaaaa atggtgcggg attaccgcca tacttacgct attctaccgg tgtataaacg
    14521 ggtagatacc tgtgcagccg agtttgcctc agatacggct tacctctatt ctacttacga
    14581 ggaagagtgt gaagccaaac cgtctgatcg caaaaaagtg atgattttag gcggcggacc
    14641 aaaccgtatc gggcagggga ttgaatttga ctactgctgc gttcacgcct cgcttgctct
    14701 gcgtgaggca ggttatgaaa ccattatggt gaactgcaac cctgaaaccg tttccaccga
    14761 tttcgacacc tccgaccgcc tctatttcga gccgctaaca ttagaagatg tactggaaat
    14821 tgtgcgtgta gaaaacccgt ggggcgtgat tgtgcattac ggcggtcaaa caccactgaa
    14881 attagcgaat gccttatctg atgccggtgt aaacattatc gggacttccg ccgacagcat
    14941 tgatgccgcc gaagaccgtg aacgtttcca acaaattcta aacactctcg gtttaaaaca
    15001 gccggcaaat cgcaccgccc gtaatgcgtt ggaagcggtg gcattggcaa atgaagtagg
    15061 ctatccgctg gtggttcgcc catcttatgt gctaggtggt cgggcaatgc aaattgtgta
    15121 taacgatgaa gagctaaacc gctatatgcg tgaagcggta tcggtttcca acgacagccc
    15181 gattttactc gaccacttcc tcaataatgc gattgaagtt gatgtggatt gcatttgtga
    15241 cggcgaaaat gtactcattg gcggcattat gcaacacgtt gagcaagccg gtattcacag
    15301 tggcgatagt gcctgctcac tacctgccta ttcgttaagc ggtcatgttt tggacgaaat
    15361 tcgcaaacaa accaacgcaa tggcgtttgc tctcggtgtg aaaggcttga tgaacgtaca
    15421 atttgcagta caaaatgagg tcgtttatgt gttggaagtt aaccctcgag ccagccgtac
    15481 tgtaccgttt gtcagcaaag ctaccggtcg cccactggca aaaatcgctg ctcgcgtgat
    15541 ggctggtgaa acccttgccg acttaaatgc attagaggaa attatcccaa gcaaattctt
    15601 cgttaaagaa gcggtattcc cattcatcaa attcccgggt gtggatacca ttctcgggcc
    15661 tgaaatgcgt tctaccggcg aagtgatggg cataggtaat acctttgctg aagcgttctt
    15721 caaagcacaa ctgggtgccg gtgaacgaat tccaaaagtc ggcaaagtgt ttatgtcggt
    15781 tattgaagag cataaacctg ctttaattta cattgccaaa cgtttccaag aacaaggcta
    15841 cggtttatgt gccaccttcg gcactgcaaa cttcctacgg caacacggaa ttgcagtcca
    15901 aacggtaaac aaagttcgtg aagggcgacc gcatattgtc gatgcgatca aaaacggcga
    15961 aattgcgttg gtaatcaaca ccgtcagcgg cgagcctgaa gtgattgccg acagccactc
    16021 tatccgccgt accgccttgc aacaacgtgt gcctatttac accacccttg caggtgctga
    16081 tgctatctcc tacggcgtaa aacatatcaa tgagtttgat gtgtattcag tgcaggaatt
    16141 agaacaaaag gctaactaaa ataaagctaa aatgacaagc ggtcagattt tgcaaatttt
    16201 ttacaaattc tgaccgcttg tgtttgtaga ggattattta gtaaatttat atgctaaatc
    16261 attccagcgt aattcatttt tgagttgtgg tagctcggta ttttggttga tatggataaa
    16321 ctcaatacca aaatattcag cgaacattcg tagcatatcg gcatcaatat ctaaactaaa
    16381 tacactatga tgagcaccgc cggctagaat ccatgcttga gtacctacat aaaaatttgg
    16441 ttgaagcttc caaaaagcat gcccaactgg taaatttggc attggatttg gtgaggcgat
    16501 agcgtctaaa tccgcaacaa ccattctaaa acggtctccc atatctacaa cggttgcatt
    16561 cactgctttt cccgccttac tactgaaaat taagcgaaca ggatctgcct taccgccaat
    16621 acctagcggt cgaatggcta atgttgattt ctctttggca atagacggac aaacttcaag
    16681 catatgagcc cccaatacca cttggttttg ttcatctaaa tcataggtgt agtcttccat
    16741 aaaggaagaa ccgtttggta agccataacc catcactttc acttcacgca caagagctgc
    16801 ggttttccaa cctccttcac caccaaatcc gtagccttgt tccattaaac gctgaacagc
    16861 caagcccggt aattgtttaa tcccatttag attttggaaa ttatcagtaa aagctttaaa
    16921 tccaccatta tctaagaatg tttttaagcc gatttcaata cgagcagaat atgcgagaga
    16981 ttctcttgct gaaccatttt cttgcaagct atcctcaaca ttatacaagc ggtcagattt
    17041 tgcaaaaaaa tgaccgcttg ttgccatttc taaagtgtga tctacctctc aaatttacaa
    17101 aattttttat aacatattga tttaaaatgt tttttatatt tttcctttaa ttgactttaa
    17161 tttgtcttaa gagtaactta taaaacgtga ttttactatt tgaaatattg aggtattcaa
    17221 gatgactatt cgagtttcct atgaagaatt aaaagctcaa tttaaacgtg ttctgttggc
    17281 tcgcaatgtg cgtgaagaga ttgccgaaga gtgtgccact gtgtttgccg acaccactca
    17341 agcgggtgct tattcacacg gggtaaaccg tttcccacgc tttattcagc agttagagaa
    17401 cggtgatatt gtgccggaag ccgtgccgac taaagtgctt tcactggggg cgattgagca
    17461 gtgggacgct caccaagcca tcggtaactt aaccgcaaaa aaaatgatgg acagagcaat
    17521 ggagcttgca tctgaaaacg gcatcggcgt agtggcgtta cgtaatgcaa accactggat
    17581 gcgtggcggt tcttacggat ggcaggcggc agagaaaggc tatatcggga tctgctggac
    17641 gaacgccctt gcggtaatgc cgccttgggg ggcgaaagag tgccgtatcg ggactaaccc
    17701 gttaatcatt gcggtgccga ctaacccaat cacgatggtg gatatgtctt gctcaatgta
    17761 ctcatacgga atgttggaag tgcatcgcct tgctggtcgt caaacctttg tcgatgctgg
    17821 ttttgatgat gacggcaacc caacccgtga tccggcaacg gtcgagaaaa acctccgtct
    17881 aatgccgatg ggcttctgga aaggttcggg cttatcgatt gtgttagata tgatcgccac
    17941 cttgctctct aacggtgaat ccactgcggc agtcaccgaa gataaagacg atgaatattg
    18001 cgtgtcgcaa gtttatatcg ctattgaagt ggatcgctta attgacggca aaaccaaaga
    18061 cgaaaaactc aaccgtatta tggaatatgt gaaaaccgca gaacgtgccg accctgatgt
    18121 ggcagtacgt ttaccgggcc acgagttcac ccaaattcta gccgataaca aagccaacgg
    18181 cattccggtg gatgacaccg tttgggcgaa attacaggcg ttgtaattgc aaattgaccg
    18241 gtagggtggg cgtaagccca cgcattagac acaatcataa gatgacgtgg gcttacgccc
    18301 accctacaag cggtcatttt tccgcagaat tttacaaaac ggaggtatga atgttttttg
    18361 gtcatatttc acaagttaaa gcgaatcgat acccgccggc gatccaaatt gcgttgaact
    18421 atctgaaaaa taccgatttt gatgcgatgg aagcaggggt ttacgaactc aaaggcagac
    18481 aaatttatgt gcaggtgttg gatttgaaca ccaaatcgaa acacgaattt cagccggaag
    18541 tgcatcgcaa ttacctcgat gtgcagtatc tacaccgagg caaagagata atggctgcgg
    18601 cggtggatac cggcaccaat ccgattgcga tggaatacaa ccctgagcgg gatattcaat
    18661 attatcaatc cgttgccaac gaaaatgaat ttcgctgcgt tgaaggcaat ttttgacggc
    18721 acggaaacca ttcgcaaagt ggtggtaaaa attgcgatga gcgaaattga ggagcaacga
    18781 tgaaagcctt agctcaatta gtcggaaaac tgttagaaat cttggtggtg gtgattttat
    18841 ccgcaatgtc gattttggtt ttcgtcaatg tggtactacg ttacggtttt aacagcagca
    18901 ttagcgtgac cgaagaggtg tctcgctata tgtttgtttg gttggcgttt ttaggggcgg
    18961 tgttggcatt tagcgaaaat caacacgtta aagtcacaat gctgaccgat aaattatcgc
    19021 caacggctcg taatatctta agcgtagtca cagatttagc gatgttgttc tgttgctact
    19081 taattgtgga cggtagctgg attcaattta acctcaacct gaataacttt gccccgattt
    19141 caggcttacc gcaaggcatc actttccttg ccagcacagt ggcaggggta ttaatcggtt
    19201 tattaattat tgcccgcatt gtggcaacgg ttggcgtgat tgcaaaagga gaaaaataga
    19261 tgactgtggt aatttttctt tccgtcttgc ttggctcgat tttattgggc attccggtag
    19321 ctttcgccct gttggtctgc ggtgtggcgt taatgttgca tttagatctg ttcgatgccc
    19381 aaattttggc tcaacaaatt gtgagcggtg cagacagttt ctcgctaatg gcaattccgt
    19441 tcttcattct tgccggtgaa attatgaacg agggcggtct ctccaaacgg attatcgacc
    19501 tgccgatgaa attagtcggt cataaacggg gcggtttagg ttttgtagca attttagcgg
    19561 cgatgattat ggcaagcctt tccggttcgg cggtggcgga taccgcagcg gtagtcgcaa
    19621 tgctactgcc gatgatgaaa accaccggtt atccgattga ccgctctgcc ggtttaatcg
    19681 gtacggcagg gattatcgcc ccaatcattc cgccaagcat tccgtttatc gtatttggtg
    19741 tggctagtgg cgtgtccatt accaaactgt tcttagccgg tattttcccg ggcattatga
    19801 tggggatctg cttggctgcc ctttggtggt ggcaggcaaa acgtttggat ttaatgacct
    19861 tctccaaagc gaccaaagaa gaactttgca tttcatttaa aaacagtatt tgggcgttat
    19921 tgttgcctgt cattattatc ggtggtttcc gctcgggaat gttcacccca accgaagcgg
    19981 gtgcggtcgc aactttctat gccttgattg tttcactgtt tgtttaccgt gaaatgaagt
    20041 tcaaagattt atacaaggta gtgttggcgg cagcgaaaac cacggcagta gtgatgttct
    20101 tagtggcagc ggcaaatgtg accggctggc tgattaccgt agcggaatta ccgatgatgc
    20161 tcaccgagct gttagagccg ttaattgaaa gcccgaccac actcttattg gtgattatgt
    20221 tagcggtgtt tattatcgga atggtgatgg acttaacccc aaccgtgctg attttaacgc
    20281 cggtattaat gccgttggtg gaagaggcag gcattgaccc ggtttacttc ggtgtgctgt
    20341 ttattcttaa cacctccatc ggcttgatta caccaccggt cggcaacgtg ctaaacgtga
    20401 ttaccggcgt gtcgaaactg ccgttcgacc aagcggctaa gggcgtaatg ccttacctcg
    20461 taatgatgat ttgtttacta ctgttgttcg tgttcttccc gtcactggtg ttagtgccgt
    20521 taagctggat gcagtaatgg tttgaaccga aacaagcggt cgaattgacg caaaaatttg
    20581 caaatttttt tggcaaaaca gaccgcttgc aactcaattt ttaatcacag gagaacccta
    20641 tgaaattatt taatttaaaa accttatttg ccttagtggc aggcgttgcg gtaatgagcg
    20701 gctctgcaat ggcagaaacc tcactgcgtt ttggttatga agccccacgt tccgataccc
    20761 aacacatcgc cgccaaaaaa ttcgatgaat tattggcagc aaaaaccaaa ggtgaaatta
    20821 aattaaaact gtttccggac agcaccttag gtaatgctca aacgatgatc agcggcgtgc
    20881 gtggcggtac tatcgacatt gaaatgtccg gctcgccaaa ctttaccggc ttagagccaa
    20941 aactaaatgt gattgatatt ccgtttattt tcaaagatcg tgaacacgtt tacaaagtat
    21001 tagacggcga agttggtcaa ggcttattaa aagatttaga agcccaaggc ttaaaaggct
    21061 tagccttctg ggacgttggc ttccgtgctt tctccaactc aaaacaccct gtgaccaagc
    21121 cggaagacat caaaggctta aaagtccgca ccaaccaaaa cccgatgtac attcaagcct
    21181 tcaccttact aggcggcaac ccggtgccaa tgccactttc tgagctttac accgcactcg
    21241 aaacccgtgc cgttgatgcc caagaacacc caatcggcat tttctggtcg gcaaaactgt
    21301 ttgaagtaca aaaacattta agtttaacca accacggcta caccccgtta atcgtggtga
    21361 tgaacaaagc gaagtttgac ggcttagctc ctgaattaca aaccgcatta gttgaagccg
    21421 caaaagaagc cggtcaattc caacgtgatc tcaacgtgaa aaacgaaaaa gagatcatcg
    21481 aaaaattacg caaacaaggc atcgaagtga tcgaacaagt ggataacgcc ccgttcaaag
    21541 cagcgattga agcggaagtc cgcaaagctt tcgtggaaaa acacggcgat gaattattga
    21601 aaaaagtgga tgcgttagca cagtaattga ctttatttta gtctaaagct ccctccgttt
    21661 ggggggagtt gttgtataga ctctactata ggagagacta tgaaactgtt taatttaaaa
    21721 actttagccg ctttcgttgc cggttttgca ctgttttcaa ccgcacaagc agaaacctca
    21781 ttccgctttg cgtatgaagc tcctcgttct gatactcaac atattgcagc gaaaaaattt
    21841 aatgatttgc tgcaagaaaa atcccaaaaa gggctgaaat taagcctctt ccctgatagc
    21901 acgctcggca acgcacaaac ggcgattagc ggtgtgcgtg gcggtactat tgatattgca
    21961 atgtccagct cctctaactt taccgggtta gaaccaaaac tgaatgtgat tgatattccg
    22021 tttattttca aagacagaga ccacgcctat aaagccttag atggagagat tggtcaaggt
    22081 ttattaaccg cattagaggc tcacggtttg aaagggttgg cgttttggga agttggtttc
    22141 cgagcgtttt ccaactccaa gcacccgatc accaaaccgg aggatattaa aggcttaaaa
    22201 atccgtacta accaaaaccc gatgtatatt caagccttct ctattttagg tgcaaatccg
    22261 gtgccaatgc cgctttccaa gctttacact gcactggaaa ccaaagcggt tgatgcccaa
    22321 gaacacccaa tcggcatttt ctggtcggca aaactctatg aagtacaaaa atatttcagc
    22381 tttactaacc acggttacac cccgttaatt gtggcgatta acaaagcgaa atttgatgca
    22441 ctgccagccg agcaacaaac cgcattagtt gaagcggcaa aagaagccgg aaaataccaa
    22501 cgccaactta acctagaaaa tgagcagaaa attatcgact cgctcaaaaa agcaggtatt
    22561 gaatttgtgg ataacttaga taccacaccg ttcaaagatg ccgtatcggc tgaaacccgc
    22621 aaggcattta tcgagaaaaa cggtgatggc ttagttaaag ccattgatgc attggcgaag
    22681 taaaaataga gctacaaagt gctcggttaa actaacctca cacgaatcgt gtgaggtaca
    22741 agcggtcaaa atccgcaaaa tttttacaca tctttcctca aaggaggaac aaatggcaca
    22801 gcccatttta agtatgcagc acatcatcaa acgctttggt agccatacgg cggtgaatga
    22861 tgtcagcctt gatatccact caggcgagat cgttgcctta ctcggtgaaa acggtgcagg
    22921 taaatcgacc ctaatcaaaa tccttgccgg tatttatgac cgtgacgagg gtgatattct
    22981 tttccataac caaaaaatcc aatctgccca cgctattgag aaaggcaaca aaaagcccat
    23041 cgcttttatc caccaagatt taggcctaat agaatggatg acgattgccg aaaatatggc
    23101 atttgtaatg gggttccctc gcaaatttgg cttgattgac tgggcgaaag tgcgagagca
    23161 gtcgcaaaaa gcccttgatt ttgtaggcat taaactctct gccgacactc gagtgtttga
    23221 tttaagccgt accgaaaaag ccttactcgc cattgcccgt gcgattgccg tcaatgcaga
    23281 aatcttggtt ttagacgaac ctactgcttc cctacctgcc tctgatgtag agcatctttt
    23341 cactgtgtta aaccgcttac gttcccaagg tgtgggaatg atttatgtga cccaccgttt
    23401 agatgaagtg atcgccattt ccgaccgcat tttggtgatg cgggacggtt tcccggttgc
    23461 agaagggcaa accaagctct atgacgtcaa aggcttggtc aaagcgattg taggcgaaga
    23521 gagccgtggc agacagcggg tggatttacc aaccgatact cctgaaattt taagcctgca
    23581 aaatgtcgtg gttggcgaca ccggcccggt gaatttccgt ctgcacaaag gtgagatgat
    23641 tgcccttgcc ggcttgcgtg gagcagggca ggaagaaatc ggccgcttat tatttgggga
    23701 gcgaacctta gacaaaggcg aaattcagtt agacaagcgg tcatattctg ctaaagatcc
    23761 gcaagatgcg atagccaaag gtgtggcatt ggttgcggga gaccgcaccc gtgaaagcgt
    23821 gtttatgtca atgactacca gtgagaacct gtttatcaac ccggtactaa gcggtcattc
    23881 accattaaaa cgctactccc gccgtgaaga gtggggtgag agctggtaca aattccaact
    23941 attcgatatt cgtccgaaaa atttgtttat tgatgccagt gcgttatccg gtggtaatca
    24001 gcagaaaatc gtgttggcac gttggatgca cctcaatacg cctgttctga ttttagaaga
    24061 cccgactgcc ggcgtggatg taggagcaag ggcagagatt tacgacttgc tcaacaaagc
    24121 ccttgcagaa ggggtcgcaa ttattgtgat ttccaccgac tttgaagaga tcgctcattt
    24181 gtgtaaccga gcattagtct tcaaccgagg ggaaattgcc ggtgaactac tgaacgaaga
    24241 ggtgactttc gccaatttgc tggcgttggc atcggatagt cagtcgaaaa aacaataact
    24301 tactctcgcc cgcttgcggg agagagacag ctaaaaatag cgtcaggcta tttttagcag
    24361 agagagggta aacaagcggt catttttctt aaaaaatatt gcgaaccctc tccctccgaa
    24421 agcctaacgg ctttctcctc cctctcccgc aagcgggcga ggggaaaatg cagaatttta
    24481 acggagtaat ttatggctca aacaaacatc aaatcaaccg cactggaaca accggtatct
    24541 atcgcccgtg acggttttat ggcatggttt tcacaaatgt ccactcgtta tggcttactg
    24601 tggttatgtg tgttattggt gattattttc tcacttacca ccgaatcttt cgcctcaatg
    24661 ctgacattaa atgcgatttt agaaagtaaa tcgaaaattg ccctacttgc tttggcagcc
    24721 acaactacaa tgattgtcgg caaaatcgac ctgaacgtgg gtttcggtat tgtgttgtgg
    24781 cacattcttg tgattactct gcaagtccaa tacggcttct cgtggtatat ggcgatctta
    24841 atcgtgttag tgattgccgc tctttacggc ttgctgaatg ggattttagt tgctcttgct
    24901 gatatcgata gctttgtggc aacacttggc tcaggcacag tgctttatgc cgtagcactc
    24961 tggcactcgg gcggtcgcca aattgtcggg gatttacccg atgaatttat cgcactcaac
    25021 agcacagaaa ttttcggtat cccgatttct gctttctatg tgctggcagt ggctatcgta
    25081 atgtggttgg tgacagaaca taccccgacc ggtcgttgta tgtatgcggt tggtggcaac
    25141 ccaacggcag ctcgcctaaa tggtatcaat attaaaaaat acaccattgt gccgtttatt
    25201 gtctctagtg taatcactgc tttcacaggc gtattgatct ctgctcaaca aggcgttggt
    25261 caggcaagtg tcggtatgga ctacttactg cccgcattgg ttggggcatt cttagggagt
    25321 accactattc gcccagggcg tattaacgta tggggaacag tggtggggat tgccattctt
    25381 gccatcggta tttcaggtat tcaacaattc ggtggagcgt tctgggttga gccactcttt
    25441 aacggtgcaa cactgttact ttccatcact attgcaggct atgcccaacg caaacgcttg
    25501 ttaaatcaaa aagctgtaca gaaaaaatcg accaactaag aggatttgat tatgaaaaaa
    25561 gcatttcgta caaccttaac tgcaatcgca accttaactg ctattgcttt cggaaataat
    25621 gcgtttgcca atgacgaccc gttcgtacaa gaagcaaaac agcttgtcgc agcagctacg
    25681 gctaagcaag aaaaatggga cggaccgaca accggccctc aattacaaaa agagaaaact
    25741 gtgattttta ttgcctctga tatgaaaaac ggtggtgtac ttggtgtgat tgacggaatg
    25801 aaagaagctg ttggcgtaac gggctggaag ttagatgtat tagacggtgc aggtacggta
    25861 aacaaccaac tcgccgcact taaccaagcg attgcccgca aaccggatgc gattgtgatt
    25921 ggtggctgga acccgaatgt ggcgaaaatc ccactacaaa aagcgactaa aaacggcatt
    25981 aaacttgcag cttggcacgc aacaccggag ccgggtgcga ttgataaata cggcattttc
    26041 tacaacgtga cctctgactc agacgaaatt gcacgcttat cggcaatgct tgcggtggca
    26101 gaatctaacg gtaaggcaaa agcgattatt ttaaccgact cgctatatga aattgcgtta
    26161 cgcaaagcga acgtcatgaa agaagttatc gaaaaatgta aagagtgtaa ggtgttagag
    26221 tttatcgaca cgccattggc ggatacctca agccgtatgc ctaacctcac tttcagctta
    26281 ctgcaaaaat atggcgacga tttagagtat gcgttggcaa ttaacgatct ctactttgac
    26341 tttatggctc cgtctttacg caccgctggt aaagataaac cgtttagcat ttccgcaggt
    26401 gatggctcag taacggctta tcaacgtatt cgcaatggtg ataaacagtt tgcaaccgtc
    26461 cctgagccac ttaacttaca cggctggcag ttagtcgatg agctaaaccg tgctttcgct
    26521 aacgaaaaac cgtctggtta tatcacaccg gctcacctag tgactaaaga aaatgtggcg
    26581 tttgacggtg gtgaaaacaa cctgtatgcc ccacaaaacg gttacaaagg cgcttacaaa
    26641 gcgatttggg gcgtgaagta atgacgtagg ggcaaataaa tatttgcctc gaacaagcgg
    26701 ttgttttttg caaagatttt gcgaaattta accgcttgtc ataaaaaata gagagggtaa
    26761 tacaaatgag caataaattt atccccaaaa tctccaaccc tcgttttaat gagctggttg
    26821 ggaatacgtt tgaacttgaa gagctttttg ataaggcaat ctgggcagaa gggccggcgt
    26881 ggagcaagcc acaacaagcc ctctatttta gtgatgtaaa aggttgcaca atgtaccgct
    26941 ggacagagca agatggtaca caggttttcc gccagccgtc ttatttttct aacggcaatg
    27001 cgtttgatgc aaacgacaac ttgattacct gtgaacacgg caatcgaggt atcagtttaa
    27061 ccacgccaag cggtgaatat cgttttttgg tcggtcaatt agacggaaaa cgactgaact
    27121 cacccaatga tgtggtggta aaatcagacg gcatcatttg gttcactgat ccaccttacg
    27181 gtattttgtc ggataacgaa ggcaaacagt cgccaagcga aattatcggt tgttatattt
    27241 actgctatga tccgaaaacc gacaagctga atattgcaac tttcaacacg atgcgaccaa
    27301 acggcttggc cttctcgtca gacgaaaaac aactctttgt ggcagatatg tcgagcgtgg
    27361 aatttgacga agatggctta caccacttag tcgtatttga tgtggacggt aataaactaa
    27421 aaaatcgccg agatgtggcg gaaattagtc ccggcattcc ggacggcttc cgaattaaac
    27481 aaaacggcgt aattttctgc tcttgtgaag agggaattat tgctctttta cctgacggca
    27541 cggagctggg acgatttgtg ctgggtaagc taacctcaaa ttgtagcttt ggcgatgatg
    27601 aacaaacact gtttattact tgttcgaata gcgtttatcg tttaacaatt aaatagcaga
    27661 atgcattaag tgcgtctgtt gtagcattac aagcggtttc tttttcaaaa ttttttacaa
    27721 acaaataatg gataacaaaa tgaactacac actcggcatt gattgcggtg ggacttttat
    27781 caaagccgct ctttttgata cacaaggtaa tattcaagcc cttcatcgtg aaaacgtttc
    27841 ggtaatcagt gaacaggcag gttatgcaga gcgtgatatg tcacaactct gggctatttg
    27901 tgcggaagta gtgcgttcaa ccattgaaaa aagtggggta aacccagcgg atattaaagc
    27961 agtagggatt tccgctcaag gcaaaggggc gtttttactg gataagcaga atcgaccgtt
    28021 ggggcgtgcg attttatctt ccgaccaacg ttcccttgag attgttaaac aatggcaggc
    28081 tgaaggcatt ccgcaacaac tttacccgat tacccgccaa actctttgga caggacaccc
    28141 tgtgtcgatt ttgaagtggg tgcagcaaaa tgaaccggag cgttatgcac aaatcggggc
    28201 ggtgttgatg tcgcacgact atttgcgttt ttgcttaacc ggtgagttgc attgcgaaga
    28261 gaccaacatt tccgaaagca atctttacaa tatggaaaaa ggcgaatacg accaacagtt
    28321 agccgatttg ttgggaatgc cggatgtgtt ggagaaatta ccaccagtga ttgaaccgaa
    28381 taaaatttcg ggatatgtga ctgaaaatgc cgccaaatta accggtttag cggtgggtac
    28441 gccgatagtc ggtggcttgt ttgatgtggt ttctaccgca cgttgtgcca atttagatga
    28501 cgaaaccaaa ctgaatgcag tgctgggaac gtggtcggtg gtgagcggca ttaccgatca
    28561 tattgatgca agccaatcat taccttttgt ttatgggcgt tatgccgagg cagggaaatt
    28621 tatcgtccac gaagcaagcc cgacttctgc cggtaattta gagtggtttg tgaatcagtg
    28681 gaaactcgat tatgtgaaaa tcaaccaagc tgttgcccaa ttaccgccgg cggcaagctc
    28741 ggtgctgttt gtgccgtttc tgtatggctc aaatgcaggc ttaggaatgc aagccggttt
    28801 ctatggtatg caagcccacc atacccaagc ccatctcttg caggcaattt acgaaggagt
    28861 gttgtttagc ttgatgagcc atttaaaccg tatgtttatc cgctttccaa aggctgacgt
    28921 gctgcgagtt accggcggac cggtgaaatc taaagtttgg atgcaaatgt tggccgattt
    28981 aaccggaatg cggcttgaaa taccacaaat ggaagaaacc ggctgcttgg gtgcggcatt
    29041 aatggcaatg caaggggttg ggctggatat aagccaagtt caagccctaa ataatgaaat
    29101 gcaggtgttt gagccaaatc cggaaaatta tgcggcttat cagacgaaat atcagcgtta
    29161 ccaaaaatta actgaagcat taaatacaat gatttaacct gaatttatgc ttttacaagc
    29221 ggtaatattt ggttactttt ttgcaaaaat tactgctttt ttgtttattt aatttatgaa
    29281 tttaattaaa taatctttaa attaaaggtt gacattatta a
//
LOCUS       DANLVT010000019        28411 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.019, whole genome shotgun sequence.
ACCESSION   DANLVT010000019 DANLVT010000000
VERSION     DANLVT010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 28411)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28411)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28411
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.019"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            64..243
                     /locus_tag="PXC99_000735"
     CDS             64..243
                     /locus_tag="PXC99_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417214.1"
                     /translation="MFKEKGYDEFLAEKIRLGLEDMQSGNGLSLDESKARTKQLIERK
                     ARELANFEQENIIYG"
     gene            236..523
                     /locus_tag="PXC99_000736"
     CDS             236..523
                     /locus_tag="PXC99_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5417215.1"
                     /translation="MAKTLRISSRAQNDIEEILASVIEYTGFESSGIRLQEDIYQKFE
                     TIAYMPSAAGRLREDGTREAFTRRYRIVYTELENEVWIITIIHSSRLYPRI"
     gene            complement(649..2751)
                     /locus_tag="PXC99_000737"
     CDS             complement(649..2751)
                     /locus_tag="PXC99_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HDL5417216.1"
                     /translation="MKSFKLLPVSAAVLSVLAANAVAQTASTDAVVLDTVTVTDNQGL
                     KVQSNVVTTKKKDESTQTDLRGLLKDEPAISLGGGNGTSQYLYIRGMGQNSIDVKVDN
                     TYSDSQILYHQGRHMLDPALVKIVSVQKGAGSASAGIGQTNGAVIAKTVDALDLLKNS
                     DKNFGAKLGTGFSTNHAHNFNATLYGKGEIFDALVSGNLVRDRDYKGGKDYVNQFGTN
                     RVPYSALDKTSFLAKLGATLGDHRFVLSHSSERNEGQRLVREEFDVAPNGTKVSPYNR
                     LTVERQAPANRRITVQRTNLEWTGKNLGFAQEATANVYQLVQGRWSENETGNGYAGGV
                     DYATKTKIVTHGANVNFDSALHENVLLKYGVNYRHQEAKPHTKFNPLVKNQEKTDTGV
                     YVEAITAPVDKVTLTTGVRYDHFKFKAMDGKERSNGAFSPSVGLIYEPIEHLSLSASH
                     NYATRSPRLYDALTAHGNRKIVSIGSNTKAEKARNTEIGFNYNNGTFSFDGSYFWQDI
                     KDALGGGRDSHNPNNELIMNLGKIKNRGYELNAGYHNGGFTARIGVAHSKPRFYSPTI
                     WEVNRQTGKREEKPLLSTNPEYASAIGRTWTASLSYRFEQPNLEVGVHHRIVEKVKPE
                     DNFFVTGGTLQTNTGTGKDGYNVTDITLNWKPLKDDSVNVNFAVDNVANKKYNAHGQR
                     GQLSARGREFRAGVNYTF"
     gene            3034..3780
                     /locus_tag="PXC99_000738"
     CDS             3034..3780
                     /locus_tag="PXC99_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL5417217.1"
                     /translation="MQLRHKQIMEYIQQFDEANVQELAEHCGVSIETIRRDLNKLDKD
                     GLLHRTHGGAVSHKKRDIGRSFTTRQRLNSEAKRSIAENVLEYLQPESVIALDASSTS
                     WNVAQRIPNIPCTVVSSSMRIIYSLSHKPHIKTIATGGIYSEKYDAFYGPLSEQLLTR
                     LKIDLAILSCTGIADGAIWESNEINISLKRKLIANSKQVFLLADHSKFERKDLFRIED
                     LSCIDKLFINQPPPDFLKNYCLAHQIEIII"
     gene            3976..5739
                     /gene="fucI"
                     /locus_tag="PXC99_000739"
     CDS             3976..5739
                     /gene="fucI"
                     /locus_tag="PXC99_000739"
                     /EC_number="5.3.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005619331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose isomerase"
                     /protein_id="HDL5417218.1"
                     /translation="MTTLKSTPVKIGIRPTIDGRRLGVRESLEDQTMNMAKAVAQLIQ
                     SEVRHPNGDFVECVIADSTIGGVAEAAACAEKFKRENVGAVITVTPCWCYGSETIDMD
                     PHMPKAIWGFNGTERPGAVYLAAALAGHSQLGLPAFSIYGTEVQEADDQSIPDDVREK
                     LLHFARAGLAVATLRGKSYLSIGSVSMGIAGSIVNQQFFQEYLGMRNEYVDMTEIKRR
                     LDRHIYDAEEFKLAMSWVKTYCKEGIDVNAPENQRSPEEREKLWEDVVKMTIIARDLM
                     VGNPRLAELGYSEEALGHNAIAAGFQGQRQWTDHLPNGDFMEATLNSTYDWNGVRAPY
                     IMATENDSLNGVNMLFGNLLTGQAQIFADVRTYWSEDSVERVTGWRPESGFIHLINSG
                     SAALDGTGQHTDRAGKPTIKPAWEVTEEDGKRCLENTCWCPAVHEYFRGGLSSQFLTK
                     GGMPFTMHRINLIKGIGPVLQIAEGWSIDLPENVHDILNKRANETWPTTWFVPRLTGK
                     GAFTDVYSVMANWGANHCVATFGHVGADLITLASMLRIPVCVHNVEDKDVFRPSAWNG
                     FGQDKEGQDYRACANFGPLYK"
     gene            5933..7366
                     /gene="fucK"
                     /locus_tag="PXC99_000740"
     CDS             5933..7366
                     /gene="fucK"
                     /locus_tag="PXC99_000740"
                     /EC_number="2.7.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculokinase"
                     /protein_id="HDL5417219.1"
                     /translation="MPISLIFDCGATNLRTIAINQAGEIVAAHHLPNNTQPDVESPEF
                     HIWDIEEIWSKLMTCAKQTLSQLSEQQRQEIVGISVTTFGVDGALFDKNGKQLYPIIS
                     WKCPRTLPIMENLANYLDVEALYQRNGVGHYSFNTLFKLLWLKENKPEIYQQAESFLF
                     ISSILTYLLTGVQTTDRTMAGTSMMTNIENDSWDKTVLDLLGLTENHFPPMKSAGEVV
                     GTLKGEISQELGLSGQIPVISCGHDTQFAIFGSGAGYNQPVLSSGTWEILMVRTPKAK
                     PQWQFVQNGLTIEFDSQSGYFNPGVQWVASGVMEWFGKRFFSDIANTEHYYRTMIEEA
                     AEVPAGSNGVKLVGNFDGTTAKTGSIIGLSMHITRGEIYRAGLEYMAHRLKEGLDVLQ
                     EVGHFNAESLICVGGGSKNALWNQIRADVLNRPIDVVDFPESTVLGAAMFTFTGAGVF
                     ENPNAAQQAVKPNVKRVEPSSNSQFYK"
     gene            7441..7872
                     /gene="fucU"
                     /locus_tag="PXC99_000741"
     CDS             7441..7872
                     /gene="fucU"
                     /locus_tag="PXC99_000741"
                     /EC_number="5.1.3.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose mutarotase"
                     /protein_id="HDL5417220.1"
                     /translation="MLKGIHPAISPDLLKVLAEMGHGDELVLSDAHFPAHSIHQNVIR
                     ADGLSVATLLEGISALFEFDQYVEAPLAMMQAVKGDTLDPSVEERYLNAIKKVNGTAP
                     KIERVERFAFYDRAKNAYAVVITGELAKYGNIIIKKGVTPV"
     gene            7932..8585
                     /locus_tag="PXC99_000742"
     CDS             7932..8585
                     /locus_tag="PXC99_000742"
                     /EC_number="4.1.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculose-phosphate aldolase"
                     /protein_id="HDL5417221.1"
                     /translation="MDRKILARQIIDTCLEMTRIGLNQGTAGNVSVRYKDGMLITPTG
                     TPYEQMTEDSIVFVDGNGKHEEGKLPSSEWQFHLAVYEARPELNAVVHNHAKNCAAVS
                     ILGEPIPAIHYMIACTGTNHIPCVPYAPFGTHQLADYVREGIKHSKAILLAHHGLITA
                     DKTLEKALGIAHEVEVIAEWYLKLLATGKPIPTLNKEQMDIVLGKFKSYGSWVESEQ"
     gene            8647..10176
                     /locus_tag="PXC99_000743"
     CDS             8647..10176
                     /locus_tag="PXC99_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL5417222.1"
                     /translation="MQNEVILTMKNISKSFAGVNALKGVELTLRKGEVHALMGENGAG
                     KSTLMKCLLGVYQADEGEIIYKGQPVRFESVLEAQKAGISMIFQELNLIPHLTVAENI
                     FFAREPLKHGLVDKDKMVEESAKLLNFFEIDVDPNDEVRMLSVAKQQMVEIAKALSFD
                     VEVLIMDEPTSALTEKEIDKLFELVDRLRAKGVSIVYISHRMEELKRICNHITIFRDG
                     TYVSNHKFNEITMDEIITKMVGRSLDNHFPPKTAVVTNDIILSIMNAERKGVFEPLNF
                     DLRKGEILGITGLVGAKRTELARAIFGADPLDSGEIFVHENKVSIKDPSDAIKAGIAY
                     LSEDRKLNGVAVRMSIRENITMASMDKVANQIGVISYDEEEKASKTFIDKMEIKTPTI
                     EQKVQNLSGGNQQKVVIGKWLFREAKVMIFDEPTRGIDVGAKYAIYQLLDELAANGVG
                     VIVISSELPEVLGVSDRIIVMREGRMTGMLETKKTNQEEIMHYATGVKNMFAREYGVE
                     K"
     gene            10173..11171
                     /locus_tag="PXC99_000744"
     CDS             10173..11171
                     /locus_tag="PXC99_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5417223.1"
                     /translation="MNEKQKEMLRKMAALAGLVLLIIFFSVTNEYFFTSNNIMTVGLQ
                     TSTIALIGIGATCVILTGGIDLSTGSVVALSGVAAAMIVNAGVPVPLGMILGILVGGI
                     CGLINGILVTRMKLPPFIATLGMMMVARGLALYVTNAAPVSGMPESFANLGNGALFKI
                     VEEGANGLPKVVFAGIPYPVIIMIFITVLFTFALSKLKVGRYLYAIGSNEEAARLSGI
                     KTNIVKIYAYVASGLLSGLTGVILASRLVTAQPNGGVSYELDAIASAVVGGTSLMGGV
                     GTIPGTLIGSFIIGVLRNGLNMNGVSSFVQMIVIGLVIIVAVSLDQLRQSKKAGKK"
     gene            11195..12142
                     /locus_tag="PXC99_000745"
     CDS             11195..12142
                     /locus_tag="PXC99_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5417224.1"
                     /translation="MKKSALFTATLFGLSTLFAGSAMAKSDEIAVIVKSANSTFWQNV
                     RKGAETAGKDIGGQYKVTFQGPEAETAIDAQVNMVDNAVNRGVAGIVLAASDPVALVP
                     AVKKAYESGIPVVLIDSGINSDGKYYQSFLATDNRAAGKLAAEKLLAKVKGGKVAVMS
                     FTQGAASAIERTGGFIDEIKAKADYKLVGPYYSDSDMTKALNQTEDVLGSNPDLAAIF
                     GANEPTAVGMARAVKQKGFAGKIVAVGFDGNSDLQNFVRDGTLDGIVVQSSYQMGYKG
                     VDTIGKLIKGEKVEKVIDTGVVYVTKENIDSEEAKGVLY"
     gene            12198..12449
                     /locus_tag="PXC99_000746"
     CDS             12198..12449
                     /locus_tag="PXC99_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIB"
                     /protein_id="HDL5417225.1"
                     /translation="MSNTLTDKALVVIAALGGRENIVDVYACITRLRVEVKNTDIVEW
                     DKIKSVGALGVVTSGSVIQSIFGSDAEAYRDEIKRILNI"
     gene            12578..13729
                     /gene="fucO"
                     /locus_tag="PXC99_000747"
     CDS             12578..13729
                     /gene="fucO"
                     /locus_tag="PXC99_000747"
                     /EC_number="1.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactaldehyde reductase"
                     /protein_id="HDL5417226.1"
                     /translation="MANRLILNETSYHGKGAIQNIVHEVTSRSFKKALVVTDKDLIKF
                     NVAQKVTALLDAAGLPYEIFDEVKANPAVDVIKAGVAKFKASSADYLIAIGGGSPIDS
                     AKAIGIIINNPEFSDVLSLEGVAPTHQKCVPIIAIPTTAGTAAEVTINYVITDEAKKR
                     KFVCVDVHDVPAVALVDPDMMESMPKSLAAATGMDALTHAIEGYITKAAWELTDALHL
                     KAIELIGRSLRGAVEKNPKDVEAMALGQYVAGMGFSNVGLGAVHSMAHPLSAYYDTPH
                     GIANAVLLPYVMEFNKNYTGEKYREIARAMGVKGVDEMSQEEYRNAAIAAVQQLSQDV
                     GIPPKLHQIGVKEADLAALSVDAFNDVCTGGNPRDCTAEELLEVYRIAY"
     gene            13996..15441
                     /gene="aldA"
                     /locus_tag="PXC99_000748"
     CDS             13996..15441
                     /gene="aldA"
                     /locus_tag="PXC99_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HDL5417227.1"
                     /translation="MVKQHKMYINGEFVPALDGRTLAVYNPATEKAISEVPRGGADDA
                     KIAIDAAEAAQEAWERLPAIERGKYLRQIAVGIRERADEIARTISEEMGKTLSLATVE
                     VHFTADYLDYMAEWARRYEGEIIQSDRPNEHIFLYKKAIGVTTGILPWNFPFFLIARK
                     AAPALVTGNTIVIKPSEDAPNNAILFSEIVHQVGLPKGVFNVVTGYGNEVGPELSGNE
                     KIGMVSFTGSQFAGQKVMEAASKNIIKVNLELGGKAPAIVLDDADLELAATAVVNSRI
                     INSGQVCNCAERIYVQSSIKEQFVQKLVEKMQAVKYGNPLEQQDIDMGPMVNEKGLHK
                     VQEMVTHALHQGGNLVLGGNVVEGTGYYFEPTIIDNVDNSMDIMRHEIFGPVIPVATF
                     DTIDEAIRLANDCEYGLTSSVYTQNINKAMKVISRLKFGETYVNRENFEAMQGYHAGW
                     RKSGIGGADGKHGLEEYLQTQVVYLQFDDKV"
     gene            15697..16344
                     /locus_tag="PXC99_000749"
     CDS             15697..16344
                     /locus_tag="PXC99_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
                     /protein_id="HDL5417228.1"
                     /translation="MSIFQQTNPNRRRYGLAVFIGIIAGIISAFVKWGAEHPFPPRSP
                     IDLFTAACPQPVLDAMNAAADQVAAKTIALQECSRAFLNPPHVFLRDYIGIDPTEAAF
                     TFADHAFNWIGVTHMIFSLVFAIGYCIVAEIFPKIKFWQGIGAGIIANICVHYITFPA
                     LGLTPPVAEWPLYEHISELVGHIFWFWTIEVIRRDLRNRITREPDAEVPLDQPFR"
     gene            complement(16477..17853)
                     /gene="trkA"
                     /locus_tag="PXC99_000750"
     CDS             complement(16477..17853)
                     /gene="trkA"
                     /locus_tag="PXC99_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkA"
                     /protein_id="HDL5417229.1"
                     /translation="MKVIILGAGQVGSTLAENLVSEDNDIVLVDNDPTRLDKLKDKHD
                     LQVIRGEYASPQTLRDAGAGDADLLVAVTNSDEVNMIACQIAYTLFNVPTKIARIRSA
                     DYVRERERLFNDDVLPIDHIIAPEILVKEDILRLIHYPGALQITHFADELVSIVNVKA
                     YYGGPLVGYPISALRDHLPHIDARVVAIFRQDKAIVPQGSTIIEAGDEVFFICATQHI
                     RAVMSELQRLDRPHKRIMIVGGGSIGSSLARDLEDQYRVKIIERNPVRAEKLAEKLSK
                     TMVLTGDASDEELLFEEHIENIDLFLAVTSDDEANIMSALLAKRLGAKKVIILVQRPA
                     YLHLIQGGTIDIAISPQQATISALASYVRKGDILQVSSLKLGVAGAVEIIAHGDATTS
                     KVVGRQIRELKLPQGAIVGAVVRGEEVIIAHKSTMIAENDRVIIFVNDKKQIDEIEKL
                     FQLGVFFL"
     gene            complement(17853..19184)
                     /gene="rsmB"
                     /locus_tag="PXC99_000751"
     CDS             complement(17853..19184)
                     /gene="rsmB"
                     /locus_tag="PXC99_000751"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HDL5417230.1"
                     /translation="MKKQSFKALSSRAISATIILQVLDQGKSLSTLIPDAQKQLEPKD
                     LPLVQEITFGVCRVLPRLESIIKLLVEKPLKGKTRLVHCLLLVGLYQLLYMRVPAHAA
                     VDEVVNATKTLKLDSFRALTNGVLRRFLREQEEILAKVDKHWQTLHPEWLVNKLKKAY
                     PNWREIVEANNQRPPMWIRVNQQHIKTNDYAALISELVEPEFAKNSENPTACVPKCAL
                     LLERAVNVNQLPHFEQGWATVQDAHAQWSAELLGAENGETVLDACAAPGGKTTHILEK
                     APKAKVMALDIEESRLSRVRENLVRLGQIAQVICGDASKPEEWLEEGVLFDRILLDAP
                     CSATGVIRRHPDIKWLRKEGDIAELATLQGEILKALWQRLKPNGILLYATCSVLPQEN
                     SEQIQRFLQDTPNAKQLEIDFNGEKVLEKQFFPQPNGGDGFFYAKLQKVAE"
     gene            complement(19236..19661)
                     /locus_tag="PXC99_000752"
     CDS             complement(19236..19661)
                     /locus_tag="PXC99_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HDL5417231.1"
                     /translation="MYNKLLIAIDLADLKSAKYVVDTALQMTAKNPNAVYRVVSIIEP
                     VDNSLISAFLPKNFDKEVVAEANQKLHEFTKNHFPEGSKVQHIVAYGTIYEEICRIAD
                     EKSVDLIMMLASSKPNAKGLSSNTVKVARNTTKPILVLR"
     gene            complement(19754..22402)
                     /locus_tag="PXC99_000753"
     CDS             complement(19754..22402)
                     /locus_tag="PXC99_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter permease"
                     /protein_id="HDL5417232.1"
                     /translation="MSVESKVDYDDLQDMVASNDSGGRTPSGLAKKAIVYVAILWSVF
                     QIYYASPLPFVFQEWLTHAGINLNVVVDDTKARSIHLAFAMFLAFLSYPAFASSPKHH
                     IPKIDWVFAIVGAGLALYYIFFYEGLVKRFGAPNTQDIIAGCLGILLVLEATRRSLGL
                     PLVIIAIVFLIYNFFGQYFPADWIVSHRSGSLSQIINQQWITTEGVFGVALGVSTKYV
                     FLFVLFGALLDKAGAGNYFIKTAFAYLGHLRGGPAKAAVVSSALTGLISGSSIANVVT
                     TGTFTIPMMKRVGFTKEKAGAVEVASSVNGQIMPPVMGAAAFLMIEYVNMPYSQLITH
                     AFLPALISYIALVYIVHLEACKMNLQGLPRAEEPSPILVFLLRTVASILVIVGLAIGV
                     YYGLGWIRDVAEDYAFMIVCAFLGLWYLLAIRRVASYPDLEADDPNSEIVSLPKRKPT
                     VNAGLHYLIPVVVLLWCLMVEMLSPGLSAFWGTITLIFIQLTQRPLLNFFRKESVTKE
                     IIKQGVRDVVDSLEAGGRNMTGIALATATAGIIVGVVALTGFGVQLSSVIELLSMGNI
                     VLMLILVAVFSLILGMGLPTTANYIVVSSLMATVIMEVGRQNGLIVPLIAVHLFVFYF
                     GIMADVTPPVGLASFAAAAISGGSPINTGMVAFKYSLRTVILPFLFIFNTDLLLIDLR
                     YPGHGWVVFITATVGVLAFTSATMQYIVTKNKWWETALLVVAAFALFRPGFFMDRIYP
                     SERHIEPVQFEEQLLASKVGQNVTLKVEGLNPYGKEIEFYAQLPVPEGATGEERLKNL
                     GLTLIQTDEKIKVDGVETPKVVIDMVEMDSPAAKAGLNWDQTIHYIAVPQDAPSKDWI
                     FIPALLLVFGIVANQRRRVKKQCVIA"
     gene            complement(22604..23566)
                     /locus_tag="PXC99_000754"
     CDS             complement(22604..23566)
                     /locus_tag="PXC99_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TAXI family TRAP transporter solute-binding
                     subunit"
                     /protein_id="HDL5417233.1"
                     /translation="MKKLVKLSFLASLVMGTASVQAAETFVTIGTGGQTGVYYVVGQS
                     ICQLVNRDSAKTGLKCNAPSTGASVANLNAIAAKEMDMGIAQSDWQYHAYNGSSSFEG
                     KKNDKIRAIFSLHPEPFTVMARTDSGIKSFDDLKAKRVNVGDPGSGTRATMNVILAAK
                     GWTDKDFKVASELKPAEMASVMCDNNLDAITYNVGHPNGALKEAAASCDAKLVPVTGP
                     EIDKLVADHSYYAKATIPGGLYKGSDEPTETFGVYATLVTSADVDADKVYNVTKAVFD
                     NFDRFKRLHPAFEHLKQEEMIKNALSAPLHEGAIRYYKEKGWIK"
     gene            complement(23750..25597)
                     /gene="selB"
                     /locus_tag="PXC99_000755"
     CDS             complement(23750..25597)
                     /gene="selB"
                     /locus_tag="PXC99_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HDL5417234.1"
                     /translation="MIICTAGHVDHGKTSLLQALTGTNTAHLPEEQKRGLTIDLGYAY
                     LPIENDILGFIDVPGHQRFLSNMLAGLGGIQHALLVISAEEGIKPQTEEHLDILHLLN
                     FQHIMIVITKADRAEETQISHLIEQVKTSYPFLAEAKTFVTSAKTQQGIEELKAHLIQ
                     LNQQHTQTHKPFRYAIDRVFNVKGAGLVVTGTTVAGKVSVGSELFLSNGKKVRVKAIH
                     AQNTPSETGVAGQRLALNIANVEKEEIKRGDWITELEPKFATDRITVQLTANQAFKEN
                     SIVHLYHFASHITGKLNLLEGQQAVKNQQFFAEVILDEPLHIAVGDKLIIRSGDDSLT
                     LAGAEVLEIHSPKRHKRTEARLALVKNLAKTTACNDFATRLDLYLQNRAMDLSLLLWA
                     EQCFAEDIAKLGFDVSSKWLFNSDFKAQAQQRVLEKMAEYHLQHQDQIGVTKARLYRI
                     ALLDLPENLANQFIEDLVEQKALVNSRGWLHLPEHRIELNADELQIWQQIRPLFEATN
                     QALWVRDIASQLSIDETQMRNLLYKVGKLGYLIPIVKDRFLLSEQIGQFATLIKDFIA
                     QNGSISVNQLRDELQYGRKLTVQLIEYFDRSGFLRRKGDVHLLRDSETF"
     gene            complement(25607..25903)
                     /locus_tag="PXC99_000756"
     CDS             complement(25607..25903)
                     /locus_tag="PXC99_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5417235.1"
                     /translation="MMKFDYNIVWLQKAEIKLFYQADYILQQSQNPIIAEQFYDAIKS
                     EVDKLSFTADVYRLRKKKEIPILNGKYQVKFLIGQENVYIVDFKSARQNSYSFL"
     gene            complement(25900..26076)
                     /locus_tag="PXC99_000757"
     CDS             complement(25900..26076)
                     /locus_tag="PXC99_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417236.1"
                     /translation="MELILAQDLAKLRTDKPQSFYTNDELDLLHQLENGLIETKSHAQ
                     VMEDLRKKLGITEK"
     gene            complement(26145..26777)
                     /gene="pdxH"
                     /locus_tag="PXC99_000758"
     CDS             complement(26145..26777)
                     /gene="pdxH"
                     /locus_tag="PXC99_000758"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005575912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HDL5417237.1"
                     /translation="MDLHHIREDYTKKVLSIRDCHSNPITQFEQWLSEAINAKVNEPT
                     AMNIATVAANGRPSSRMVLLKEVNSQGFVFFTNYQSRKGWEIADNPFGCLTFFWAELQ
                     RQVRIEGKIAKIPEAESDAYFDSRPYTSRLGAWASEQSQPIENYKALLLKSAQFALKY
                     PLSVPRPPHWGGYILIPDSIELWQGRSSRLHDRIHYWLENNEWKKERLSP"
     gene            complement(26835..28217)
                     /locus_tag="PXC99_000759"
     CDS             complement(26835..28217)
                     /locus_tag="PXC99_000759"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HDL5417238.1"
                     /translation="MQQLFRQIPSLDLLLKKPQAVELCQKFAYSSVAEQARSLLTQAR
                     QFISQQQALPDFIADENLFFIRLEQKVQALSEVKIRSVFNLTGTVLHTNLGRGLWSEK
                     AIQAATNAMRNNVALEFDIEAGKRSHRDNYISELLQILTGAEAACIVNNNAAAVLLML
                     ATFAQGKEVIVSRGELVEIGGAFRIPDIMAQAGCKLVEVGTTNRTHLKDYRNAITENT
                     AFLMKVHTSNYHIEGFTSSVSEEELVALGKEFNLPVITDLGSGSLTDMQALNLPAEPK
                     VQQKVAAGVDLVSFSGDKLLGGPQAGIIVGSQAMISQLQQHPLKRVLRCDKVILSALE
                     ATLRHYLFPEQLTDNLPTLHLLTQPLETLQHKAERLKQALHKRLNSAYILQIELSLAQ
                     IGSGALPTETLPSVAVTISAEKQSDLIALEQQFKTYPSPIIGRFAQQKFWLDLRSVAE
                     FDKLIEMLEY"
     gene            28285..28379
                     /locus_tag="PXC99_000760"
     tRNA            28285..28379
                     /locus_tag="PXC99_000760"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:28319..28321,aa:Sec,seq:tca)
BASE COUNT         8297 a         6120 c         5934 g         8060 t
ORIGIN      
        1 aatttgacaa ctcaaaatta aaagcagaca atgcttttaa ttatatctta ataggagcag
       61 attatgttta aagagaaagg ctatgatgaa ttcctagcag aaaaaattcg ccttggctta
      121 gaagatatgc aatcaggtaa tggtctttca ctcgatgaat caaaagcacg aaccaaacaa
      181 ctgattgaac gtaaagcaag agaactcgca aactttgaac aagagaatat catttatggc
      241 taaaacatta cgaattagca gtagagctca aaatgatatt gaagaaattt tagcgagcgt
      301 aattgaatat actggttttg aaagtagtgg aattcgctta caagaagata tttaccaaaa
      361 atttgagact atcgcttata tgccctctgc ggctggacgt ttaagagaag atggcacaag
      421 agaagcattc actaggcgtt atcgtattgt ttataccgaa ttagaaaatg aagtgtggat
      481 tattaccatt attcatagta gcagacttta tccacgcatt taaataacaa acgactaaaa
      541 tagtcggttt tttatttgca aaaaattaat aaaatatcac cgcttgtaag ctccataaaa
      601 aaaagcccga ttgtaacatc gggcgtttta gtctgaattt aagtcagatt agaatgtgta
      661 gttcacacct gcacggaatt cacgtccacg agctgataat tgaccacgct gaccgtgtgc
      721 gttgtatttt ttattcgcca cgttatccac tgcgaagttt acattcacgc tatcatcttt
      781 aagtggtttc cagtttaagg tgatatcagt tacattgtag ccgtctttgc ctgtaccggt
      841 atttgtttgt aatgttccgc ccgtaacgaa gaaattatct tcaggtttca ctttctcaac
      901 aatacggtgg tgtacgccaa cctctaaatt tggttgttca aagcgatagc ttaaagaagc
      961 tgtccaagta cgaccgatag ctgaggcgta ttctgggtta gtacttaata atggtttttc
     1021 ttcccgctta ccagtttgtc tgtttacttc ccaaatagtt ggtgagtaga aacgcggttt
     1081 gctgtgtgca acaccaatac gagcagtaaa accaccatta tggtaacctg catttaactc
     1141 ataaccacgg tttttaattt tacctaggtt cataattaac tcattattag gattatggct
     1201 atcacgacca ccacctaatg catcttttat atcttgccag aaatagctac catcaaaact
     1261 gaatgtacca ttgttatagt tgaaaccgat ttcagtatta cgagctttct ccgctttagt
     1321 attgctacca atactaacga tttttctatt tccgtgagcc gttagtgcat cgtataaacg
     1381 agggctacga gttgcatagt tgtggcttgc acttaagctt aaatgttcaa ttggctcata
     1441 gataagccca acgcttgggc tgaatgcacc attactacgc tctttaccat ccattgcttt
     1501 gaatttgaag tggtcgtaac gtacaccggt agttaaagtt actttatcta ctggagcagt
     1561 aattgcttca acatacacgc cggtatcggt tttctcttgg tttttcacaa gagggttaaa
     1621 tttagtgtgt ggtttagctt cttggtggcg atagttcaca ccgtatttta ataatacatt
     1681 ttcgtgaagg gcagaatcaa agtttacgtt tgcaccgtgg gttactattt tagttttggt
     1741 tgcataatct acaccaccag cataaccatt acctgtttca ttctcagacc aacgaccttg
     1801 tactaactga tacacgttag ctgttgcttc ttgagcaaaa cctaagtttt taccagtcca
     1861 ttctaagtta gttctttgaa ccgtaattct acggttagct ggagcttggc gttctacagt
     1921 taagcggttg tacggagaaa cctttgtgcc gttaggtgct acatcaaatt cttcacgcac
     1981 taaacgctga ccttcatttc gctcacttga atggcttaat acaaaacggt gatctcccaa
     2041 tgttgcacct aatttagcta aaaagctggt tttatctagt gcactatacg gaacacggtt
     2101 tgtgccgaat tggtttacgt aatctttacc gcctttatag tcgcgatctc tcacaagatt
     2161 acctgagact aaagcatcaa agatttcgcc tttaccatat aaggttgcat tgaaattgtg
     2221 agcgtggttt gtgctgaagc cagtacctaa ttttgcaccg aagtttttat cgctgttttt
     2281 taataaatct aatgcatcaa cggttttagc aattactgca ccattagttt gaccaatacc
     2341 ggctgaagca ctgcctgcac ctttttgtac agaaacaatt ttcaccaatg ccggatctaa
     2401 catatgacga ccttggtgat acaaaatttg gctatctgag taagtgttat ctacttttac
     2461 atcaattgag ttttgaccca taccacgaat atagagatat tgtgatgtac cgttaccacc
     2521 acctaagcta attgccggct catcttttaa taaaccacgc aaatcggttt gggtgctttc
     2581 atcttttttc ttagttgtta ccacattgct ttgtactttt aaaccttgat tatctgttac
     2641 ggtaacagta tctaatacta ctgcatctgt tgaagcagtt tgagccactg cattagcagc
     2701 aagtacgctc aataccgcag cagaaacagg gagcaatttg aagcttttca ttttatttat
     2761 attccttagg taaattattt aagaggatta tctgtttgat attaaaaata attctcaaca
     2821 ccaaacgttc gcaaatttta cagagataaa aatgattgtc aattagtctg aaatgaaatt
     2881 tcacaaaata tattacaaat tttacaaaaa gttccctaaa tttaaccgct tgcaacacaa
     2941 aatgtgatcg ccttctaaaa atcaaatttg cttgctcgac agtaacgcta caagcggtta
     3001 aatttggaga aaaatttaca aaaaggatag attatgcagc tgcgacacaa acagataatg
     3061 gaatatatac aacagtttga tgaagctaac gttcaagaat tggcggaaca ttgtggggtt
     3121 tcgattgaaa ctatccgccg agatttaaat aagctagata aagatggatt attacatcgc
     3181 actcacggtg gagctgtgag ccataaaaag cgagatattg gtcgctcatt taccacccga
     3241 caacggctga acagtgaggc gaaacgcagt atcgcagaaa atgtgttgga atatttacaa
     3301 ccagaatcgg tgattgcttt agatgccagc tcaacctctt ggaatgtggc acagcgtatt
     3361 ccaaatattc cttgcaccgt tgtcagcagt tcaatgcgga ttatctacag cctttcacac
     3421 aaaccgcaca ttaaaacgat tgccaccggt ggtatttatt ccgaaaaata cgatgccttc
     3481 tatggtccat tatccgagca gttactgacc cgtttaaaaa ttgatcttgc cattctttct
     3541 tgtacaggca ttgccgatgg ggcgatttgg gaatcaaatg aaattaatat ttcccttaaa
     3601 cgtaaattaa ttgcgaacag taaacaggtt tttttattag ccgatcacag taaatttgag
     3661 cgtaaagact tgtttcgtat cgaagattta tcttgcattg ataaattatt tatcaaccaa
     3721 cccccaccgg actttctcaa aaattattgc ttagcacatc aaattgaaat cattatttag
     3781 tgatttctgc ccgattttat tcagaaataa aacaaatcgg gcattctttt ttcactcatt
     3841 tttaccaaaa tcccccattt tttgtgatcg cactcacaaa atttaaacta aattcgcatt
     3901 tttcttcata actcatattg cgtatgcata ataaattcaa tcgcaaattt ttttaaccaa
     3961 tcgggagaac tatttatgac aacgttgaaa tctacccctg taaaaattgg tatccgccca
     4021 accattgacg gtcgccgttt aggagtgcgt gaatcacttg aagatcaaac aatgaatatg
     4081 gcaaaagccg ttgcacaatt aattcaatct gaagtccgcc acccaaatgg tgatttcgtt
     4141 gaatgtgtga ttgctgattc caccatcggt ggtgttgccg aagctgcggc ttgtgcagaa
     4201 aaattcaaac gtgaaaatgt cggagcggtg attaccgtaa ccccttgctg gtgctacggt
     4261 tctgaaacca ttgatatgga cccacatatg ccgaaagcca tttggggctt taacggaaca
     4321 gaacgcccag gtgcagttta tttagctgct gctttagcag gtcatagcca attaggttta
     4381 ccggcattct ccatttatgg cacagaagta caagaagctg acgatcaatc tattccagac
     4441 gatgtgcgtg aaaaattact ccactttgcc cgtgccggct tagcagtggc aaccttacga
     4501 ggaaaatcat atttatctat cggctctgtt tcaatgggta ttgccggttc tatcgtaaac
     4561 caacaattct tccaagaata tttgggtatg cgtaacgaat atgtggatat gaccgaaatt
     4621 aaacgccgtt tagatcgcca tatttacgat gccgaagaat ttaaattagc aatgagctgg
     4681 gtgaaaacct attgcaaaga aggtattgat gtcaacgcac cggaaaatca acgcagcccg
     4741 gaagagcgtg aaaaactctg ggaagacgtg gtgaaaatga ccattattgc ccgtgattta
     4801 atggtgggta atcctcgctt agcagagcta ggctatagtg aagaagcctt agggcataat
     4861 gcgattgctg ccggtttcca agggcaacgc caatggacag accatttgcc aaacggcgat
     4921 tttatggaag ctaccttgaa ttcgacctat gactggaacg gcgttcgcgc accatacatt
     4981 atggcaactg aaaacgacag cttaaatggc gtgaatatgt tgttcggtaa cttattaacc
     5041 ggtcaggcac aaatctttgc cgatgtgcgg acatactgga gcgaagactc ggtagaacgt
     5101 gtcaccggct ggcgtccgga aagcggtttt atccacttaa tcaactccgg ctctgcggcg
     5161 ttagacggaa caggtcagca taccgataga gcaggcaaac caactattaa accggcttgg
     5221 gaagtgactg aagaagacgg taaacgttgt ttagaaaaca cctgttggtg tccggcagtt
     5281 cacgaatatt tccgtggtgg tttatcttcc caattcttaa ccaaaggtgg aatgccgttt
     5341 acgatgcacc gtatcaacct gatcaaaggt atcgggccgg ttttacaaat tgccgaaggt
     5401 tggtctatcg acttgccgga aaatgtacac gacattttaa acaaacgcgc caatgaaacc
     5461 tggccgacca cttggttcgt acctcgctta accggaaaag gcgcatttac cgatgtgtat
     5521 agcgtaatgg cgaactgggg tgcaaaccac tgtgtggcaa ccttcggaca cgttggggca
     5581 gacttaatta ccctcgcctc aatgctccgc attccggttt gtgtgcacaa tgtggaagat
     5641 aaagacgtat tccgcccaag tgcgtggaac ggtttcggtc aagacaaaga aggtcaagac
     5701 taccgtgctt gtgctaactt cggaccatta tataaataat acacaatcac cctctcccct
     5761 tgtgggagag ggacagccaa gcaattcgtt cagaattgaa tggcagggag agggctacaa
     5821 gcggtcgctt ttctctcaaa atttacaaat ccctctctct gattaaattg ctaaacgcaa
     5881 tttaatctat ctctctaaaa gggagatatt aggataagta aaggagataa caatgccaat
     5941 ttctcttatt ttcgactgtg gtgccaccaa cctccgtacg attgcgatta atcaagcggg
     6001 tgaaattgtg gcagcccatc atctaccgaa taacacacaa ccagatgtgg aaagcccaga
     6061 atttcatatt tgggatattg aagagatctg gtcgaaatta atgacctgtg ccaaacagac
     6121 gctttctcaa ctttcagaac aacaacggca agagattgtt gggatttcag taaccacctt
     6181 tggcgtggac ggtgcattat ttgacaaaaa cggcaagcag ctttatccga tcatttcttg
     6241 gaaatgcccg agaaccctac cgattatgga aaaccttgcc aattatcttg atgttgaggc
     6301 gttatatcaa cgtaatggcg ttggacatta tagtttcaac accttattca aattattgtg
     6361 gttaaaagag aacaaaccag aaatttatca acaagctgag agtttcttat tcatctcatc
     6421 tattttgact taccttctta caggcgtgca aacaaccgac cgcacaatgg cgggaacgtc
     6481 aatgatgaca aacatcgaaa acgattcgtg ggataaaaca gttttagatt tattaggctt
     6541 aaccgaaaac cattttcctc caatgaaaag tgcaggagaa gttgtgggaa cattaaaagg
     6601 agaaatttcc caagagttag gtttaagcgg tcaaattcca gtaatttctt gcggacacga
     6661 tactcaattt gccatttttg gctcaggagc tggctataac caacctgtgt taagttcagg
     6721 cacttgggaa attttaatgg ttcgtacccc aaaagcaaaa ccacaatggc aattcgttca
     6781 aaacggctta accattgagt ttgatagcca atctggttat ttcaacccag gtgtgcagtg
     6841 ggtagcttca ggtgtgatgg agtggtttgg caaacgtttc ttctctgata tagccaatac
     6901 tgaacattac taccgcacaa tgattgaaga agcggcagaa gtgcctgctg gctcaaacgg
     6961 tgtgaaatta gtcggcaatt ttgatggcac aacagctaaa acaggttcaa ttatcggctt
     7021 atctatgcac atcactcgtg gcgaaattta ccgtgcaggc ttggaatata tggctcatcg
     7081 tctaaaagaa gggttagatg tattacaaga agtcggtcat tttaatgctg agagtttgat
     7141 ttgtgtggga ggtggttcta aaaacgcttt atggaatcaa attcgagccg atgtcttaaa
     7201 tagaccgatt gatgtagtgg atttccctga aagtaccgta ttaggcgcgg caatgtttac
     7261 ttttacaggt gctggtgtat ttgaaaatcc aaatgcggct caacaggcag tgaagccaaa
     7321 tgtgaaacgg gttgagccat cgtcaaatag tcaattttat aaataaagtt tctcccctct
     7381 ctctgatttg aggttcattc agaacatcaa atcagagaga gggtaaaaaa ggagttcaaa
     7441 atgttaaaag gtattcaccc ggcaatttct ccagatttat taaaagtctt agccgaaatg
     7501 gggcacggcg atgaattagt gctttctgat gcacacttcc ctgctcactc tattcatcaa
     7561 aacgtcattc gtgcagatgg cttaagtgtt gccaccttat tagaaggcat ttctgctctg
     7621 tttgaatttg accaatacgt tgaagcccca cttgcaatga tgcaagcagt aaaaggcgac
     7681 acgctcgatc caagcgttga agagcgttac ctcaatgcaa ttaaaaaagt aaacggaaca
     7741 gccccgaaaa tagagcgtgt agaacgcttc gctttctatg atagagccaa aaacgcttat
     7801 gccgttgtca ttacaggcga gttagccaaa tacggcaaca ttattatcaa aaaaggcgta
     7861 acaccggttt aattacaagc ggttaaaaaa gcagaatttt ttacaaatat aaaattaaaa
     7921 ggagttcaac aatggacaga aaaatactgg cgagacaaat cattgatact tgtcttgaaa
     7981 tgacccgaat tgggttaaat caaggtacag caggcaatgt gagcgtacgt tataaagacg
     8041 gtatgctcat tacgccaaca ggtacacctt atgagcaaat gaccgaagat tctatcgtct
     8101 ttgttgatgg caacggcaaa cacgaagagg gaaaactccc ttcaagtgag tggcagttcc
     8161 atttagcggt ttatgaggct cgccctgaat taaatgcggt agttcacaac cacgctaaaa
     8221 actgtgccgc agtgtctatt ttaggtgaac ctatccctgc cattcactat atgatcgcct
     8281 gcaccggcac taatcacatt ccttgtgtac cttatgcccc gttcggcact caccaattag
     8341 ccgactatgt acgtgaaggc attaaacaca gcaaagcaat tttactcgct caccacggct
     8401 taatcaccgc agataaaacc ctcgaaaaag ccctcggcat cgcccacgag gtggaagtga
     8461 tcgcagaatg gtatttgaaa ctgctcgcta caggaaaacc tatcccaacg ctaaacaaag
     8521 aacaaatgga tatcgtactc ggaaaattta agtcctatgg ttcttgggtg gaaagcgaac
     8581 aatagcctgc cataaataac atacaagcgg tgatatttct taaaattttt acaaacggag
     8641 tgcagtatgc aaaatgaagt aatactcacg atgaaaaaca tcagtaaatc ctttgcgggg
     8701 gtcaatgcgt taaaaggtgt tgagcttacg ctgcgtaagg gcgaagttca cgcattaatg
     8761 ggcgaaaacg gtgcaggtaa atccaccttg atgaaatgct tgctgggcgt atatcaagcc
     8821 gatgaaggtg aaatcatata taaaggtcag cctgttcgct ttgagtcggt attagaggca
     8881 caaaaagcgg gcattagtat gattttccaa gaactgaacc tcattcccca tttaacggtg
     8941 gcagagaata ttttcttcgc ccgtgagcca ctcaaacacg gtttagtgga taaagacaaa
     9001 atggtggaag aatcggctaa attgctgaat ttctttgaga ttgatgttga tccaaacgat
     9061 gaagtgagaa tgttgtcggt agccaaacaa cagatggtag aaattgccaa agccctttca
     9121 tttgatgtgg aagtactgat tatggacgag ccgacctccg ctcttaccga aaaagagatc
     9181 gataaattat ttgaattggt cgatagactg cgtgccaaag gggtgagcat tgtctatatt
     9241 tctcaccgaa tggaagaatt aaaacgtatc tgtaaccata ttacgatttt ccgtgatggc
     9301 acctatgtat ctaaccataa attcaatgaa atcacgatgg atgagatcat taccaaaatg
     9361 gttgggcgtt cattggataa ccatttccca ccaaaaaccg ctgtggtgac aaacgacatt
     9421 atcctctcga ttatgaatgc tgaacgtaag ggagtgtttg aaccattgaa ctttgactta
     9481 cgcaaaggag aaattctggg cattaccggc ttggttggag caaaacgtac tgaactggct
     9541 cgagccatct tcggagcaga cccacttgat agcggtgaga tttttgtgca cgagaacaaa
     9601 gtcagcatta aagatccgag tgatgcaatt aaagccggta tagcctattt gtcggaagac
     9661 cgtaagctca atggtgttgc agtaagaatg tcgattcgtg agaatatcac gatggcatct
     9721 atggataaag ttgccaatca aataggtgtg atttcttacg atgaagaaga aaaagcctca
     9781 aaaactttca tcgacaaaat ggaaatcaaa accccaacga ttgagcagaa agttcaaaac
     9841 ttaagtggtg gtaaccaaca aaaagtggta attggtaaat ggttattccg tgaagcaaaa
     9901 gtgatgattt ttgatgagcc gactcgggga attgatgtcg gagcaaaata tgctatctat
     9961 caactgctcg atgagcttgc tgccaatggc gtgggtgtta tcgtgatctc ttccgaattg
    10021 cctgaagtct tgggagtttc cgaccgcatc attgtaatgc gtgaaggtag aatgacaggt
    10081 atgctcgaga ctaaaaaaac caaccaagaa gaaattatgc attatgcaac tggtgttaaa
    10141 aatatgtttg ctcgtgaata tggggtggaa aaatgaatga aaaacaaaaa gaaatgttaa
    10201 gaaaaatggc tgcattggct ggcttagtac tattaatcat ctttttcagc gtaaccaatg
    10261 aatacttctt tacctccaat aacattatga cagtagggct acaaacctct accattgcgt
    10321 taattggtat tggggcaacc tgtgtgatct taaccggtgg aattgattta agtaccggtt
    10381 cagtagttgc actctccggt gtggcagctg caatgattgt aaatgccggt gtacccgtac
    10441 cactaggaat gattttaggg attttggtcg gcggtatttg tggcttaatc aacggcattt
    10501 tagtcaccag aatgaaattg cctccgttta ttgctaccct cggtatgatg atggttgccc
    10561 gtggtttagc attgtatgtt accaatgccg caccagtttc cggaatgcct gaatcctttg
    10621 ccaatctcgg taacggagca ttatttaaaa ttgtggaaga aggggcaaac ggcttgccga
    10681 aagtggtatt tgcaggtatt ccttaccctg tgattattat gatctttatt accgtactat
    10741 tcactttcgc tctctctaaa ctgaaagtcg gacgctatct ttacgcaatt ggttctaacg
    10801 aagaagccgc acgcttatcc ggcattaaaa ccaatattgt caaaatctat gcctatgttg
    10861 ccagtggctt actctctggt ttaactggcg ttatccttgc ctcccgcctc gtcaccgccc
    10921 agccaaacgg tggggtctct tacgagctgg atgcgattgc cagtgctgtg gtgggcggca
    10981 catcgcttat gggcggtgtg ggtactatcc ccggcacact catcgggtca ttcattatcg
    11041 gggtactccg taatggtttg aatatgaatg gcgtttcttc atttgttcaa atgattgtca
    11101 tcgggcttgt gattatcgtg gcggtctctc tcgaccagct ccgccaatcc aaaaaagccg
    11161 gtaaaaaata atccactctt aaaggagaat taaaatgaaa aaatcagcat tatttactgc
    11221 gaccctcttt ggtttatcga ccttatttgc aggcagtgca atggcaaaat ctgatgaaat
    11281 cgctgtgatt gtgaaatctg ccaactctac cttctggcaa aacgtgcgta aaggggctga
    11341 aactgccggc aaagatattg gaggacaata caaagtcacc ttccaagggc cggaagccga
    11401 aacagcgatt gacgcccaag tgaatatggt ggacaacgcc gtaaaccgtg gcgtggcagg
    11461 catcgtactg gctgcctcag acccggtagc attagtgccg gcggtgaaaa aagcttatga
    11521 gagtggcatt ccggtggtgc ttatcgattc cggcatcaac agtgacggca aatactacca
    11581 atctttcctt gccaccgaca accgtgcagc aggtaaatta gcagcggaaa aactgcttgc
    11641 caaagtcaaa ggcggcaaag tggcagtgat gagctttacc caaggggcag catcagcgat
    11701 tgagcgtacc ggtggtttta ttgacgaaat caaagcaaaa gccgattaca aactggtcgg
    11761 cccgtactac tccgattcgg atatgaccaa agcgttaaac caaaccgaag acgtattagg
    11821 ttctaaccct gatcttgcag cgatcttcgg ggcgaacgaa ccgactgcgg taggaatggc
    11881 acgagcggtg aaacaaaaag gctttgccgg caaaattgta gcggtgggct ttgatggaaa
    11941 ctccgaccta caaaacttcg tgcgtgacgg aacactagac ggcatcgtgg tgcaatcttc
    12001 ctaccaaatg ggctataaag gcgtggacac catcggcaag ctgattaaag gcgagaaagt
    12061 cgaaaaagtg attgataccg gggtggttta tgtcacgaaa gaaaacattg atagcgaaga
    12121 agcgaaaggt gttctttact aacattcaag ttaaacgggg tggggttgcc caccctttca
    12181 gccgaaagga agccaatatg tcaaataccc ttaccgataa agccttagtg gtgattgccg
    12241 cacttggcgg tcgagaaaat attgtcgatg tttacgcctg tattacccgc ctacgtgtgg
    12301 aggtgaaaaa taccgacatt gtggaatggg ataaaattaa atctgtcggt gcgttaggcg
    12361 ttgtgacctc aggctcagtt attcaatcta tttttggtag cgatgccgaa gcctaccgtg
    12421 atgaaatcaa acgtattttg aatatttagc ctaagcacac tcacaacaaa agaatcgcaa
    12481 caagcggtga aatttttatc aaaatttgca aaaaaatgac gtaatttgac cgcttgcaag
    12541 ttaatcgaat tgtttaactt ttaagaagga aaatagtatg gcaaatcgtc ttatcctcaa
    12601 tgaaaccagt taccacggca aaggagcaat ccaaaatatt gttcacgaag tgaccagccg
    12661 gagtttcaaa aaagcccttg tggtaacaga caaagacctg atcaaattta acgttgccca
    12721 aaaagtcacc gccttgcttg atgccgcagg cttgccttat gagattttcg atgaggtcaa
    12781 agccaacccg gcagtcgatg tgatcaaagc gggggtcgca aaattcaaag cctccagtgc
    12841 cgattattta attgcgattg gtggcggctc accgattgat agtgccaaag cgattggtat
    12901 tatcatcaat aaccctgagt ttagcgatgt actttcattg gaaggtgtcg ccccaaccca
    12961 ccaaaaatgt gtgccgatta tcgccattcc aactaccgca ggtacagccg cagaagtcac
    13021 gattaactat gtcattaccg atgaagcgaa aaaacgcaaa tttgtgtgcg tggacgttca
    13081 cgatgtgccg gcagtggcgt tagtcgatcc agatatgatg gaatctatgc cgaaaagctt
    13141 ggctgccgca accggtatgg acgctctcac ccacgccatt gaaggctaca ttaccaaagc
    13201 ggcgtgggaa ttaaccgatg ctctacacct taaagcgatt gagctgatcg gccgttcatt
    13261 gcgtggtgca gtggagaaaa atccgaaaga tgtcgaggca atggcattgg gacaatatgt
    13321 ggctggaatg ggcttctcca acgttgggct tggcgcggtt cacagtatgg cacacccgct
    13381 ttctgcctat tacgacaccc cacacggcat tgccaacgca gtattactgc cgtatgtgat
    13441 ggaatttaat aaaaattaca ccggcgaaaa ataccgtgaa attgcccgag caatgggggt
    13501 aaaaggcgta gatgaaatga gccaagaaga gtaccgcaac gccgccattg ctgccgtaca
    13561 acagctttca caagatgtcg gcattccgcc aaaactgcat caaatcggcg ttaaagaagc
    13621 cgatttagcg gcattatcgg tcgatgcctt taatgatgtc tgcaccggtg gcaacccgag
    13681 agattgtacg gctgaggagc tgttggaggt atatcggatc gcatactaag ttctatcttt
    13741 gttaaataga caagcggtga ttttttaata aaaatttgca atttctgtta aaaaaatact
    13801 gatagtcata atgcccgatt tctcatattt atggaaaaat cgggcatttt cgttgctttt
    13861 ttatcgccaa gaaatgtgat tttgttcaca tttatatcta taaattaaca aaaataaaac
    13921 aatttgtttg caaaggcggt tcagttaccg aatgatagtc atcaacttcc actgtggata
    13981 aaaaaggagc aactcatggt gaaacaacat aaaatgtata ttaatggtga atttgtgcct
    14041 gcgttagatg gtcgcacttt agcagtctat aaccctgcca ccgaaaaagc tatctccgaa
    14101 gtccctcgtg gcggagctga tgatgccaaa atcgctatcg atgctgctga agccgcccaa
    14161 gaagcttggg aacgtttacc agcgattgaa cgaggaaaat atttacgtca aattgctgtg
    14221 gggattcgtg agcgtgccga tgaaattgct cgcactattt ccgaagaaat gggtaaaact
    14281 ctgtccttag caaccgttga ggtacatttt accgctgact acttagacta tatggcagaa
    14341 tgggcgagac gttatgaagg ggaaattatc caaagtgatc gcccaaatga acatattttc
    14401 ctatacaaaa aagcgattgg cgtcaccacc ggcattttac cttggaactt cccgttcttc
    14461 ctcattgccc gtaaagcggc tccggcatta gtaacaggta atactattgt gattaaaccg
    14521 agtgaagatg cacctaataa tgcgattctc ttttcggaaa tcgtgcatca agtcggttta
    14581 cctaaggggg tatttaatgt cgtcaccggc tatggcaatg aagtcgggcc ggaactttca
    14641 ggcaatgaaa aaatcggtat ggtttccttt accggtagcc agtttgccgg acaaaaagtg
    14701 atggaagccg ccagcaagaa tatcattaaa gtcaatttgg aattgggcgg aaaagcaccg
    14761 gctatcgtat tagacgatgc agatcttgag cttgctgcta ccgctgtagt aaattctcga
    14821 atcatcaatt caggacaggt ttgtaactgt gcagaacgca tttatgtaca gagttcaatt
    14881 aaagagcaat ttgtccaaaa attggtagag aaaatgcaag cggtgaaata tggtaatcca
    14941 ttagaacaac aagacattga tatggggccg atggtaaatg aaaaaggctt gcataaagtg
    15001 caggaaatgg tgacacacgc actgcatcaa ggaggtaatc tggtattagg tggtaacgtg
    15061 gttgaaggaa caggctacta ctttgagcca actattatcg acaatgtaga taactctatg
    15121 gatattatgc gtcacgaaat ttttggtccg gtcattccgg ttgcgacatt tgataccatt
    15181 gatgaagcga ttcgcttagc caatgattgt gaatatggct taacctcttc ggtttacacg
    15241 caaaatatca ataaagcgat gaaagtaatt tcccgcttaa aattcggaga aacttatgta
    15301 aaccgtgaaa actttgaagc aatgcaaggc taccacgccg gttggcgtaa atcgggtatt
    15361 ggcggtgctg acggtaagca cggcttagag gaatacctac aaactcaggt ggtttatctg
    15421 caatttgatg ataaagtata gattcttcta aaaactccca cttatcaaaa taagcgggag
    15481 ttttctttta ggttaacctt gtatcaaaat tgcaaacaaa aatattctaa tgttaagtaa
    15541 atgtttaata attatttatg gttaactctt tttggctaat taatttgcaa tttaaattaa
    15601 ttgagtgcag aatgccatta gccttttttg aaatcacatt ccataaaatg gcttgattaa
    15661 cacaacacaa ttatcactca aattaggatt ttcattatga gtattttcca acaaaccaat
    15721 ccaaaccgcc gtcgttatgg gctagctgta tttatcggga ttattgccgg tattatttca
    15781 gcattcgtaa aatggggggc agaacatcct ttcccacctc gtagccctat cgatctgttt
    15841 accgctgctt gcccgcaacc tgtgttagat gcaatgaatg ccgcagcaga ccaagtggct
    15901 gccaaaacca tcgcattaca agaatgttca cgtgcatttt taaacccacc acacgttttc
    15961 ttacgtgatt atattggtat cgatccaact gaagcagcat ttacctttgc tgaccacgcg
    16021 ttcaactgga ttggtgtcac ccatatgatt ttctcgttag tctttgcgat tggttactgc
    16081 attgtggcgg aaatcttccc aaaaattaaa ttctggcaag gtatcggtgc cggtatcatc
    16141 gctaatattt gtgttcacta catcaccttc ccggcattag gtttaacacc accggttgct
    16201 gaatggccgt tatatgaaca catttctgaa ttagttggtc atattttctg gttctggacc
    16261 attgaggtga ttcgtcgcga tttacgtaac cgtattacgc gtgaacctga tgccgaagtg
    16321 ccgttagatc aaccgttccg ttaatttaaa attagctcga tttatacaaa agccgcaatc
    16381 acgttgcggc tttcttattt tacaagcggt caaattttca tgaaaattta ccaaacaaaa
    16441 agcacattgt ttcatgtagc aatgcggagc ttggctttat aagaaaaata caccaagttg
    16501 gaacagtttt tcaatttcat cgatctgttt cttatcgttc acaaaaataa tcacacggtc
    16561 attttctgca atcatggtgg atttgtgggc gataataact tcttcgcctc gcaccaccgc
    16621 cccaacaatt gccccttgcg gtagttttaa ttcacggatt tgtcgtccaa ccacttttga
    16681 agtggttgca tcgccgtgag cgataatttc taccgctcct gcaaccccaa gtttgagtga
    16741 agaaacttgt aaaatatcgc cttttctaac gtaactagcg agagcagaaa tagtagcttg
    16801 ttgtggggaa atggcaatat caatagtgcc accttgaatc aggtgtaaat aggcagggcg
    16861 ttgcactaaa ataatcactt ttttcgcccc aagccgtttt gccagcaggg cggacataat
    16921 attcgcttca tcatcactgg tgacggcaag gaataaatca atattctcaa tatgctcctc
    16981 aaacagcaac tcttcatcgg aggcatcacc ggtaagcacc atcgttttag atagtttttc
    17041 tgctaatttt tcggctcgaa ccggattgcg ttcgataatt tttacccgat actgatcttc
    17101 taaatcccga gctaacgaag agccgatgct ccctccaccg acaatcataa tccgcttatg
    17161 tgggcgatca agccgttgta gttcactcat tactgctcga atatgttggg ttgcacagat
    17221 gaaaaagact tcatcacctg cctcaataat agttgaacct tgtggcacaa tcgctttgtc
    17281 ttggcggaaa attgccacga cccgagcatc aatatgcggt aaatgatcac gcagggctga
    17341 aatcgggtaa ccgaccaaag gcccaccgta ataggctttt acattcacga tactgactaa
    17401 ctcatcagca aaatgagtaa tttgcaacgc ccccggatag tgaataaggc gtaaaatatc
    17461 ttctttgact aaaatttcag gggcaataat atggtcaata ggcaatacat catcattaaa
    17521 caaccgctct cgttctctca cataatcagc actgcgaata cgggcaattt tggtcggcac
    17581 attaaataaa gtgtaagcaa tttggcaagc gatcatattc acttcatcac tattagttac
    17641 agcaactaat agatcagcat cacctgcacc ggcatcacgc aaggtttgag gtgaagcata
    17701 ttcgccccga atcacctgta aatcgtgttt atctttgagc ttgtctaaac gagttgggtc
    17761 attatccacc aagacaatat cattgtcttc actcaccaaa ttttctgcca gcgtagaacc
    17821 aacttgtcct gcccctaaaa taattacttt cattactctg ccactttttg tagttttgcg
    17881 tagaagaaac catcaccacc gtttggttgt gggaagaact gtttttctaa cactttttcg
    17941 ccgttaaaat cgatttcaag ttgttttgca ttcggtgtat cttgtaaaaa ccgttgaatt
    18001 tgctcgctat tttcttgcgg taacaccgag caagtggcat ataacaaaat gccgtttggc
    18061 tttaaccttt gccataacgc cttgagaatc tcaccctgta atgtggctaa ttctgcaata
    18121 tcaccctctt tacgcaacca tttaatatca gggtggcggc gaatgactcc ggttgcggaa
    18181 caaggggcat caagtaaaat gcggtcaaac agcacaccct cttcaagcca ttcctcaggt
    18241 ttggaagcat cgccacaaat tacctgtgca atctgcccca gtcggactaa gttttcacgc
    18301 actcggctta aacggctctc ttcaatatcc aacgccataa cctttgcttt cggtgctttt
    18361 tctaaaatat gggtagtttt gccacccggt gcggcacagg catctaaaac ggtttcacca
    18421 ttttctgccc cgagcaactc cgctgaccat tgtgcgtgag catcttgcac ggttgcccaa
    18481 ccttgctcga aatgtggcag ttggttcaca tttaccgctc tctccagcaa taaagcacac
    18541 tttggcacgc aagcggtcgg attttctgaa ttttttgcaa attcaggctc aaccagctcg
    18601 ctaatcaacg ccgcataatc attggtcttg atatgttgtt gattgactcg aatccacatt
    18661 ggtgggcgtt ggttgtttgc ttcaacaatt tctcgccagt tcggataggc ttttttaagt
    18721 ttattgacca accattcagg gtggagcgtt tgccaatgtt tatctacctt cgctaagatt
    18781 tcttcttgct ctcgcagaaa acggcgtagc acaccgttag tcaaggctcg gaagctatcc
    18841 agttttagcg ttttagttgc attcactacc tcatcaaccg cagcgtgtgc cggcactcgc
    18901 atataaagca gttggtataa acccactaac agtaagcaat gcaccaaacg ggttttgcct
    18961 ttcagcggtt tttcaactaa taatttgatg atcgattcca agcgaggcag cacacggcac
    19021 actccgaagg tgatttcttg cactaagggt aaatcttttg gttcaagctg tttttgagcg
    19081 tcaggaatca aggtggaaag tgatttacct tgatctaaca cctgtaaaat aatggttgca
    19141 cttattgctc tagaagaaag tgctttgaac gattgttttt tcataaataa aaatgccatt
    19201 ccgacagaat ggcactattg taactgaatg cgggattatc ttaaaactaa aattggcttg
    19261 gtggtgttgc gagccacttt aaccgtatta gagcttaagc ccttcgcatt tggtttgctg
    19321 cttgccagca tcataattaa atccaccgac ttttcatcgg caatacggca aatttcttca
    19381 taaatcgtac catacgccac aatgtgctgc acttttgaac cttcaggaaa atggtttttg
    19441 gtaaattcgt gcaatttttg gtttgcttca gccaccactt ctttatcgaa atttttcggc
    19501 aagaatgcag aaattaagct gttatccacc ggctcaataa tagacacaac ccgataaacc
    19561 gcattcggat tttttgccgt catttgtaat gccgtatcta ccacatattt agcacttttt
    19621 aggtcggcta aatcaatcgc aataagtaat ttgttataca tatttattcc gtaggggcag
    19681 gtcctgtgcc tgcccgaata ttaactaaaa tagcggacgg gcacaggacc cgtccctaca
    19741 tagcatataa atactatgca ataacacact gttttttcac tctacggcgt tggtttgcca
    19801 caataccaaa taccaacaat agagcaggaa tgaagatcca atctttagaa ggagcatctt
    19861 gcggtacggc aatgtagtga atggtttgat cccagtttaa gcctgcttta gctgccggag
    19921 aatccatttc taccatatca atcaccactt ttggtgtttc tacgccatca actttgattt
    19981 tttcatcggt ttgaattagc gttaagccta agtttttcaa acgctcttcg ccggttgctc
    20041 cttccggtac aggtaattga gcgtagaact caatttcttt accgtaaggg tttaatccct
    20101 ctacttttaa agtaacattt tgacctactt tgcttgcaag caactgttct tcaaactgca
    20161 ccggctcgat atgacgttca gacggataaa ttctgtccat aaagaagccc ggacggaaca
    20221 aggcgaaagc ggctacaacc agcaacgccg tttcccacca tttgttttta gtcacaatat
    20281 attgcattgt agcagaggta aaggcgagaa ccccaacagt tgcggtaata aacacaaccc
    20341 agccgtgccc cggataacgc agatcaatta ataataaatc ggtattaaaa ataaataaga
    20401 acggtaaaat gacggttctt aaactatatt taaatgccac cataccggta ttaatcgggc
    20461 taccgcctga aattgctgcc gcagcgaacg aggctaaacc aacaggtgga gtcacatctg
    20521 ccataatccc aaaatagaat acgaataaat gcaccgcaat caacggcacg attaacccgt
    20581 tttgacgacc gacttccatg ataaccgttg ccattaatga tgacaccaca atgtagtttg
    20641 cagttgtcgg taagcccatt cccaaaatta agctgaatac ggctaccaag atcaacatta
    20701 gcacaatgtt gcccattgat aggagttcaa tcacacttga aagctgaacc ccaaagcccg
    20761 ttagtgccac aacgccgaca ataatccctg ctgttgcggt agcgagggcg ataccggtca
    20821 tattacgacc gccagcctca aggctatcta ccacatctcg aacaccttgt ttgataatct
    20881 ctttggttac gctctcttta cggaagaaat tcagtaacgg gcgttgggtt aattgaataa
    20941 aaattaaggt aatggttccc cagaatgcgg ataagcccgg cgaaagcatt tccaccatta
    21001 agcaccaaag tagcacaacc acaggaataa ggtaatgtaa acctgcattt acggttggtt
    21061 ttctttttgg tagagaaaca atttctgagt ttggatcgtc cgcttctaaa tcagggtagc
    21121 ttgccacacg gcgaatagcc agtagatacc ataagcctaa gaaagcacag acaatcataa
    21181 acgcataatc ttctgccaca tcacgaatcc aacctaagcc gtagtaaacg ccaatcgcta
    21241 atcctacgat cactaaaatt gaagctacgg ttcttagcaa gaagactaaa atcgggcttg
    21301 gctcttcggc tcttggtaag ccttgtaaat tcatcttaca agcttctaaa tgcacgatat
    21361 acaccaacgc aatatacgaa attaacgcag gtaagaaggc gtgagtaatc agctggctat
    21421 acggcatatt cacatattcg atcatcaaga acgctgcagc ccccattacc ggtggcataa
    21481 tttgaccgtt tactgatgag gcaacttcca ccgcaccggc tttttctttg gtaaagccga
    21541 cccgtttcat cattggaata gtgaatgtac ctgtcgtcac gacgtttgca atcgaagagc
    21601 ctgaaatcaa gccggttaaa gcggaagaaa ccaccgccgc ttttgccgga ccaccacgca
    21661 aatgccctaa ataggcaaag gcggttttaa taaagtagtt acctgctcct gctttatcga
    21721 gcaacgcccc aaataatacg aacaggaaca catatttggt cgaaacccca agggctacac
    21781 caaacacgcc ttcagtggta atccattgtt ggttgataat ttgagaaagc gaacctgagc
    21841 ggtggcttac aatccaatct gccgggaaat attgcccgaa gaagttatag atcaggaata
    21901 caatcgcaat aatcacaagc ggtaagccaa gactacggcg ggtcgcttcc agcaccaata
    21961 aaatccctaa acagccggcg ataatatctt gcgtatttgg cgctccaaaa cgtttcacca
    22021 aaccttcata gaagaaaata taatacaacg ctaacccagc tcctacgatg gcaaacaccc
    22081 aatctatttt aggaatatga tgtttaggcg agctggcaaa agcagggtaa gataggaacg
    22141 ccaagaacat tgcaaaggct aagtggatag aacgggcttt ggtgtcgtcc accaccacat
    22201 tcaaattaat gcctgcgtga gtaagccatt cttggaatac aaacggcaat ggagaagcat
    22261 aataaatttg gaacacagac caaagaatgg cgacatacac aatggctttt ttcgcaagac
    22321 cggacggggt tcgcccccca ctgtcattgg aggcaaccat atcttgtagg tcatcgtaat
    22381 caaccttaga ttcaactgac ataaagactc ctcaaaacgc aagcggtcat tttcttatta
    22441 aattttacaa atttcctcaa aaaacaaccg cttgctcgtg aaaacactgt tgataagtta
    22501 tcaattaaag gtgaaaatcg ataacttatc aacagtttca aaaaagcaaa aaaccagcac
    22561 gctaaaaaac gtgctgattg aatcaaatta cagaaaggaa atattactta atccaacctt
    22621 tctctttata gtaacgaatt gcaccttcgt gtaacggagc agaaagggcg tttttgatca
    22681 tctcttcttg ttttaagtgt tcaaacgccg gatgtaaacg tttgaaacgg tcgaagttat
    22741 caaataccgc tttggttaca ttgtacactt tatctgcatc cacatcggca gaagtcacta
    22801 acgttgcata tacaccgaag gtttctgtcg gctcatccga acctttatat aaaccgcccg
    22861 gaatcgtagc tttggcataa tatgagtgat ctgccactaa tttatcaatt tcagggccgg
    22921 ttaccggcac taatttcgca tcgcaagaag cggctgcttc ttttaacgca ccattcgggt
    22981 gacctacgtt ataagtgatg gcatctaagt tgttatcaca cattacagat gccatttctg
    23041 ccggtttcaa ttcagaagcc actttgaaat ctttatccgt ccagcctttt gccgctaaaa
    23101 tcacgttcat tgttgcacga gtaccggaac ccgggtcgcc cacgtttaca cgttttgctt
    23161 ttaaatcatc gaacgattta atgcctgaat cggtacgagc cattactgta aacggttccg
    23221 ggtgaagcga gaaaatggca cgaattttat cgtttttctt accttcaaat gagcttgagc
    23281 cgttataggc gtggtattgc cagtctgatt gtgcaatccc catatccatt tcttttgctg
    23341 caatcgcatt taagtttgca accgatgccc ctgttgaagg agcgttacat tttaaacctg
    23401 tttttgctga atcacggttt actaattggc aaatagattg acccacaaca taataaacac
    23461 cggtttgacc gcctgttccg atagtcacaa atgtttcagc cgcttgaaca gatgctgttc
    23521 ccatcacaag gcttgcaagg aaagaaagtt tgactaattt tttcattttt aactcctaaa
    23581 attaaggatc agaaaacaaa gatttattgt tttgagccac tgctcacact acaagagata
    23641 caaaacttct ttgagttgca tttgcctctt agagcttgtt tttagcatag attttataat
    23701 tagtaaattt attttttcgc ataaaaaaat ctatgcctaa tgccacaagc taaaatgttt
    23761 cactatctct taacaaatgc acatcgcctt ttcgtcttaa aaaaccgcta cgatcaaaat
    23821 attcaattaa ttgtaccgtc aattttcgcc catactgcaa ctcatctcgc aactggttca
    23881 ccgaaatgct gccgttttgg gcgataaaat ctttaattaa cgttgcaaat tgcccgattt
    23941 gttcgcttaa taaaaatcta tctttgacga ttgggattaa atagcccaat ttcccgactt
    24001 tatacagcaa attccgcatt tgggtttcat caatcgagag ctggcttgca atatccctca
    24061 cccaaagagc ttgattggtt gcctcaaaca gcggtcgaat ttgttgccaa atttgcaatt
    24121 catcggcgtt caattcgatt cgatgttccg gcaaatgtaa ccaaccacga ctattgacca
    24181 aggctttttg ctccaccaaa tcctcaataa attgatttgc caagttttca ggcaaatcca
    24241 ataacgctat gcgatataaa cgagctttgg tcacgccgat ttgatcttga tgttgcaggt
    24301 ggtattctgc cattttttcc aacacccgtt gctgggcttg agctttaaaa tccgaattaa
    24361 ataaccattt agacgagaca tcaaacccca gttttgcaat atcctctgca aaacattgct
    24421 ccgcccataa cagcaaggat aaatccatcg ctctgttttg cagatagaga tcaaggcgtg
    24481 tcgcaaagtc attacaagcg gtggtttttg ctaaattttt taccaaagct aaacgggctt
    24541 cggtacgttt atgccgtttt ggtgagtgaa tttccagcac ctccgctccg gctaacgtta
    24601 ggctgtcatc accgctgcgg atgatcaact tatcaccaac ggcaatatga agtggttcat
    24661 ctaaaatcac ttctgcaaaa aattgctgat ttttgaccgc ttgttgcccc tcaagcaaat
    24721 tcaatttgcc ggtaatgtgc gaagcaaaat ggtaaagatg cacaatgctg ttttctttga
    24781 aggcttgatt ggcagtgagt tgaaccgtaa tgcgatcggt ggcaaatttc ggctcaagct
    24841 cggtaatcca atcgcctcgc ttgatttcct ctttttccac gttagcgata tttaacgcca
    24901 aacgttgccc tgccactccc gtttccgaag gcgtattttg ggcgtgaatc gctttgaccc
    24961 gcactttttt accattcgac aaaaataact cagagccaac gctcactttt cccgccaccg
    25021 ttgtgccggt aacgaccaac cctgctcctt tcacattaaa cacacggtca atcgcataac
    25081 ggaacggttt atgggtttgg gtatgttgtt gatttaattg aattaaatgt gcttttaatt
    25141 cttcaatccc ttgttgcgtt tttgccgaag taacaaaggt ttttgcttcc gctaaaaacg
    25201 gatagcttgt tttcacttgc tcaattaagt ggctgatttg agtttcttcc gcccgatctg
    25261 ccttagtaat cacaatcata atatgctgga aattcagcag gtggagaata tccaaatgct
    25321 cttcggtttg tggcttaatc ccttcttcgg cagaaatcac caacagggcg tgttgaatgc
    25381 cgccaagccc tgccagcata ttagataaaa aacgctgatg acccggcaca tcaataaacc
    25441 ctaaaatatc gttctcaatc ggtaaatagg catagcccaa atcaatggtt agcccacgtt
    25501 tttgttcttc gggcaaatgg gcggtgttag tgccggttaa ggcttgtaaa agcgatgttt
    25561 tgccgtggtc aacgtgaccg gcggtgcaga tgatcattga tagtccttat aaaaatgagt
    25621 aactattctg gcgagcagat ttaaaatcta caatatagac attttcctga ccaatcagga
    25681 actttacttg gtacttaccg tttaaaatgg gaatttcttt tttcttgcga agtcgataaa
    25741 catcggcagt aaaggaaagt ttatccactt cactttttat tgcatcataa aattgttctg
    25801 caataatcgg gttttgggat tgttgtaata tataatctgc ttgataaaac aattttattt
    25861 ctgctttctg tagccaaaca atattgtaat caaacttcat catttttccg tgattcccaa
    25921 ttttttgcgt aaatcttcca tcacctgagc gtgggattta gtttcaatta agccattttc
    25981 taattgatgt aataaatcaa gttcatcatt agtataaaaa ctttgtggct tatctgtgcg
    26041 taattttgct aaatcttgtg cgagtatgag ttccatattt cccccttaca aacttagatt
    26101 attcaatatt gtaacctgat aaaactaaag ttcaaggagt gtatttaagg cgataaccgc
    26161 tcttttttcc actcattatt ttccaaccaa taatgaatgc ggtcgtgtag ccggctactt
    26221 ctgccttgcc agagttcaat actgtcggga atcagaatat agccacccca atgcggtggg
    26281 cgaggcactg aaagtggata tttcaatgca aattgagctg attttagcaa caaagccttg
    26341 tagttttcga taggctgact ctgctcgctc gcccaagccc ccaaacggct ggtgtaagga
    26401 cgagagtcaa aataggcatc ggattctgcc tctggaattt ttgctatttt cccttcaatc
    26461 cgcacttgac gttgtaattc tgcccaaaag aaggttaaac atccaaaagg attatcggca
    26521 atttcccacc ctttacggct ttgataattg gtaaagaaca caaagccttg tgaatttacc
    26581 tctttcaaca gcaccattcg gctacttggt cgcccgtttg ctgcaacggt agcaatattc
    26641 attgctgtcg gctcattcac tttggcattg attgcctcac tcaaccattg ttcaaattgg
    26701 gtgattgggt ttgagtgaca atctcggatt gaaagcactt ttttggtgta atcttctcga
    26761 atgtggtgca gatccataag gattccttta tcttattcta aataatcgga caggcacagt
    26821 ctgccctacc aaaattaata ttccaacatc tcaatcaact tatcaaactc cgcgaccgag
    26881 cgtaaatcta accaaaattt ctgctgagca aaacgcccga taatcgggct tgggtaggtt
    26941 ttaaattgtt gttccaatgc aattaaatcg ctctgttttt cagcggaaat agtcactgcc
    27001 accgaaggta aggtttctgt gggtaacgca ccgctgccga tttgagcgag gcttagctca
    27061 atttgcaaaa tataagcaga atttaaccgc ttgtgtagtg cctgttttaa tcgctctgct
    27121 ttgtgttgca aggtttcaag cggttgagtg agtaaatgaa gagtcggcaa gttatcggtt
    27181 aattgctccg gaaataagta gtggcgtagc gttgcctcaa gtgccgataa aatcacttta
    27241 tcgcaacgta gcacccgttt tagcgggtgt tgttgcagtt ggctaatcat cgcttggcta
    27301 ccgacaataa tgccggcttg cggcccgcct aataatttat cgccagagaa ggaaaccaaa
    27361 tctaccccag ccgctacttt ttgctgaacc tttggctcag caggcaaatt aagagcttgc
    27421 atatcagtta gcgaaccact gcctaagtcg gtaatcacag gcaggttaaa ctctttaccg
    27481 agagccacca attcctcttc cgacaccgaa ctggtgaacc cctcaatgtg gtagttactg
    27541 gtgtgaactt tcattaaaaa ggcggtattt tcggtgatcg cgttgcgata atcctttaaa
    27601 tgagtgcgat tagtcgtacc aacttccacc aatttgcaac cggcttgagc cataatatcc
    27661 ggaatgcgga atgccccgcc aatttccacc agctcgccac gggaaacgat gacttccttg
    27721 ccttgtgcga aggttgctaa catcaacaac accgctgccg cattattatt cacaatgcaa
    27781 gcggcctccg ctccggtaag tatttgcaac aactcggaaa tgtagttatc tcggtgcgag
    27841 cgcttgcctg cttcaatatc aaattccaac gccacattgt ttcgcattgc gttggttgct
    27901 gcctgtatcg ccttttccga ccacaaccca cgccctaagt tggtgtgtaa caccgtaccg
    27961 gttaagttga acacggaacg gattttcacc tcactcaacg cttgcacttt ttgttccagc
    28021 cttataaaaa acaggttttc atcggcaata aaatccggca aggcttgctg ttgggaaata
    28081 aattgacgtg cttgagtaag caaactccta gcttgttcag ccacgctgga atatgcaaat
    28141 ttttggcata attcgaccgc ttgtggcttt ttcaacaaga ggtcgagcga gggaatttgg
    28201 cgaaatagtt gttgcataat gtgaatgatt gagagaatat tttggacaat tctaataaat
    28261 aaagtacaat attgccaatt tttcggaagt gcgtcatctc cggtgaggtg gcaggacttc
    28321 aaatcctgtt gaggacgcca gcgttctcgg gtgggttcaa ctcccatgca cttccgccac
    28381 atttcaaaag ccgttaatct ttaacggctt t
//
LOCUS       DANLVT010000020        28264 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.020, whole genome shotgun sequence.
ACCESSION   DANLVT010000020 DANLVT010000000
VERSION     DANLVT010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 28264)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28264)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28264
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.020"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(199..2547)
                     /locus_tag="PXC99_000761"
     CDS             complement(199..2547)
                     /locus_tag="PXC99_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL5417239.1"
                     /translation="MLISAQFSPLVWAENNDVAVLDEVSVVGSTPSISQGSEVTLLKV
                     SDKIIAGKEFKKRSATLGNALASELGVHSNPFGGGASKPIIRGQEGARIRILQNGSDV
                     IDMSNLSPDHAVVADSLLADQVEILRGSSTLLYASSSPVGIVNVVDKRIPTAIPEKGY
                     EVELNSRFDTAAKEKVGALGATFGIGNHIAVRVEGLSRHSDNYRVPGINLGERLNYVP
                     DTYNKSKVGTLGLSFVGERGYIGASYSKRRDNYGLPGHNHKFDFCTGHIYGNKRDKYA
                     YTYLYPHLIGEENIGSNPHFHCGTNHAEDGTHSHDNPFGHAHDHTHKGPWVDLESKRI
                     DVKAELRQPFKGVDKIKASYADADYYHDEKDAGVLATRYHKQLKKDQDYGKPVNIFKN
                     RGKNTRLEVYHAPLGGLTGVWGVQYQTQKSSMNAPKDREVKFPLVENTNKQFSLFGVE
                     QYMWDSVAVELAGRMEKQKIEIEYDRNEIKRLQEHYRISGGKQVEPDLSPYDETAYAY
                     SGTLNWFFHPDYQLSFTASHNERLPTPMELYYHGQHIATNSFEYGNKDLKKEQSNNVE
                     LGLGYQAERIGYKVSVYYNHFKNYIYNENLFRENQLFMRRYNQAKARFYGVEAEASYR
                     FNDQYQATIFGDMVRGWLTNLPPLKINSDYSVFKDYLPENVEKGKDYLLYRADQNTPR
                     TPPMRLGFRFNAEFTPNWSGDLELIRTFTQRRTSQLEYITEGNTMLNVGLSYSNKWKE
                     LDYKISLNGTNLLNQPVYIHTSYHQFVPQMGRNFMLGMEMKF"
     gene            2732..4189
                     /locus_tag="PXC99_000762"
     CDS             2732..4189
                     /locus_tag="PXC99_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417240.1"
                     /translation="MRSTFKLTLAALAVSIVLSGCKSSQGPSIVADSPPPKEITATDG
                     NDKEKTDNKEKKSAQPNKSDPQPDKPANAKDPVKPDAETNKPSKKDKEYTPPATEKID
                     NSSVQPDKMVPNPIENKENDSNKPNPKESDSDNNDKVTEGNKPNAPTETVNKDKEAEK
                     SKKENKEDSSNNTPNINFDGAKPIDTDSKGSPYRVINLNPRKSVVNASAMQKVDFDSF
                     TDESVENSPFVSSDTEKEYNNTLVFGLGAGDKDSYFKNLNQKGDKHLGIHSGVYEDAN
                     LEGNTKKINYLYVNQPYSSYGALFTDQKDSHLFNVRLTAGRDDVKENGDSYAEYGVFT
                     QSGKEAKWNDNLIGDATYKGQAIARVIRQVNGEQVAGIPQFDGDVTLNLHLSKEWNES
                     KLNGKIDSQSVGVITLKESEIANPTALRSNIGFGEEVIVENKENLVGDYAVDFTGPQL
                     EEAVGVVELENEAETFSENEVIKYNAVFGVSKAAK"
     gene            4253..5665
                     /locus_tag="PXC99_000763"
     CDS             4253..5665
                     /locus_tag="PXC99_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5417241.1"
                     /translation="MKKIALLALFPMMLFARDPNTTQAYIEHTAQPTTTPQRVKIEKS
                     VPIFNETELRANQLLTEKLLIQAIYSRRLANMEKLTAIYRDFTHIDPVLLRYAQGKIA
                     LLKGDYAQAIQHFQTILAKQPKLNTVRIELAIALLYDQQLNQAQAQFEKAKSAEHLPP
                     KVHALIEQYQQHLAKKQEWKFSFSANYVRDGNINRTSKQPNIEQTGYVKQPNLLPQTA
                     HGVHYAFGLQRDFNLFDSHYVSFDNQTQGELYWDNHDYDEITNRTLFGYAYKKSDQTT
                     RLLPFYEKRWKHHRSERWTNGIRLEHAQWFSPHWQLATALEYGKKRYFDLPIYNGSYK
                     LASATLLWLRNPQQFFFVGTDFNQDKTQLKQYSSDTKGIRFGWQREWQALELSSRLTL
                     GYTDRRYKDTAILGGKLNLGRIRHDRVQSANLTLWKRDWHWLGLMPKLQFSYAKHRSN
                     LPSLYAYTDKNINLIIESRF"
     gene            complement(5915..6238)
                     /locus_tag="PXC99_000764"
     CDS             complement(5915..6238)
                     /locus_tag="PXC99_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin"
                     /protein_id="HDL5417242.1"
                     /translation="MQKAYQIYTHSEREKVTEAKLELGKVETRLRNEGKTKEEIAQHP
                     EYLQLKRDLNDKQQTFDNAYGTGSKTKRAVDAVTAALQGLAAKDSGQAAVGLASPYLN
                     EQIKK"
     gene            complement(6207..6734)
                     /locus_tag="PXC99_000765"
     CDS             complement(6207..6734)
                     /locus_tag="PXC99_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HDL5417243.1"
                     /translation="MRDKNKERQQTLERYQELYDQDPELRVIAANSEGDLDLLQETFF
                     VKGELTITDSTPKEKWNWLHMCNLNSYSPSPLSVVEFYIKHGVDVNAQDCYGMTPLHY
                     AMRAKNVDAAIALLNAGADPNIENKDQVIPLSMIGAVPKEIELIEHDISEVKETQELV
                     KGIGEIAEGLSDLHA"
     gene            complement(6736..6948)
                     /locus_tag="PXC99_000766"
     CDS             complement(6736..6948)
                     /locus_tag="PXC99_000766"
                     /inference="COORDINATES: protein motif:HMM:NF025767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH/ENDO VII family nuclease"
                     /protein_id="HDL5417244.1"
                     /translation="MYCWEHRRLSLAAKELNWSQKQFNDYVNARPENFRLENISENRS
                     HKNEMPGKDNIKSIIDDMKKFQQIGK"
     gene            complement(6963..7502)
                     /locus_tag="PXC99_000767"
     CDS             complement(6963..7502)
                     /locus_tag="PXC99_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HDL5417245.1"
                     /translation="MNELYEKYKDEPSMLVAIADGEGNIGVLEDIFLYKKQLAFSYVT
                     PLERWNWLHQCNLNSYAPAPLSVIEFYIQNGVEINAQDCYGMTPLHYAMRAKNVDAAI
                     ALLNAGADPNIPNQDNLIPLSMIGYLPDRLDVLELMLEKGANVHFLVNKNETILESYK
                     PTEMEPNLAPIYELMLKYA"
     gene            complement(7504..17148)
                     /locus_tag="PXC99_000768"
     CDS             complement(7504..17148)
                     /locus_tag="PXC99_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin repeat-containing protein"
                     /protein_id="HDL5417246.1"
                     /translation="MNKHCFRTIFSKTLQRIVVVSELAKLAGKSESESMTSGAILQKI
                     CKIRPLAFSLFCALGFVTLSDNAMAETLIIQADSTAPKNQQPIILQTANGLPQINIQT
                     PNDKGLSHNKYSQFDVAEKGAILNNSRTNTATQQAGMVQGNPYLARGEAKVILNEVNS
                     SKPSVMKGYVEVAGKKAEVIIANPSGLHCDGCGIINADRATLTTGKPQINQGNLEGFV
                     VEKGKVTVAGKGLDNSRVDYTDILAREAKINAGVWSKKETKVITGKNTVKRSNSDNNL
                     QIIHTNQPLAGEEKPTVAIDVGELGGMYAGKIHLIGTEQGVGVRNAGHIGASADTLTI
                     DSQGRIVNSGTFNAQRQVQLNAQHGIDNQGKIENKQGNIQLNSKADIQNSGSIVARGG
                     NIQKKAETKIQQSGETVAKGNITYTARQIHADKNSLIAAGVDVTDTAQGEVRKLEAQS
                     VAGKTIQLTAPEKTTVQGKNIASGKINVAAAEIDANQSQNNAHTVEYSAKSGDIQANS
                     AQFSANQIKLTTPKWLSTEGSQLTAEVIEAQQANLNARGSVWKQTGEQDFRLKAESIH
                     TDSARFSVGGHFEIDGNRLTNNQGLLSSGKRLGLNLNDAVDSVDGKLVAKGELSIRAP
                     LLNNQQGLILSGEKQAITVNTLKNQSGVITSQTEQTLDITSELQNQGGRISASGVAIN
                     AQSLDNREQGEISSVKELALTVSQQVDNRHGVIQSVGNLTLNSTLLDNQGGVLKSATD
                     ITLNVPTVLNNRISENGSLIEAGGSLTMNSFEVENQGTLARQPQPIQGIIASQFVLNS
                     TKQLNNEKGGIYIGSSARFTLSDSLNNRNGEILSWGDLAIFGGKSLTMTNTEGKVSAN
                     NGLEITAKALSGDGDVQAGDIRLNLQENFDITKDINANRSMIIQTEGDILNRKKLAAN
                     DRLQLTANQITNAQNARISSADTRLTATSTVYNEGLINSRSDNDNAQTVIKAQEIHNI
                     GTGNIYGDKVALGAERILNQDKDGTSATIAARQSLGLAAKVIENNTLVYEANKKSGSL
                     IYSGGEIAIGRQLNEQDTVIGNAGQLHNRSSIIEAEGRIQLNADKVANVNSHYRSELE
                     TTDRQTVNEHFILPRDKHNRGGSDVYDNGHLPTINVNQLRKGYYRKTWSYWQKYDEAN
                     LPVITDISQLNATTVLAKPYAQSCANDESVDCTLLPAGNYKKDNPVWTWFNLTPPAED
                     APEMTPEIIQAMNEEDLANQHLSEAEQEKLQKEQGQGIAPVVPARPIEPVRGSTETEA
                     QYQKRLQTYQAELKAYEAAEAAYQRYVLLKPLIDWEAKYGANIQALDEAIAKHNKANL
                     SQEYPHFWNLWIKERMVKENITKASLPAQILAGGDLTYQSDEFINDKSWVIAGKALNP
                     IGRSRIANLDDADAVRQDWELGRRQFSFTEYHGGTRRRHSRYDENDGPLARLKEVHKD
                     MNIFVELENTSPTAYTDYVDAKAANAVKPEGNQVERGNLPDAPNPPTMAIERIPSPNA
                     AAFEVRSMTVDTRLPNQGLYRINPQADSHVLIETDPDFTDKKRWLSSDYMFNALRHDH
                     NNVHKRLGDGFYEQRLIREQINRLTGRQFLGDYTDFDSQYKALMDAGITFAQKFNLRL
                     GITLSPEQVASLTSDIVWFETQTVRLPSGETVSVLVPKVYALARKGDIDGKGSLISAD
                     ALTINSKEIVNQGTIAGRRLAQFNAERLENSGTLSGGVLAAKVSGDLENIGGKIEADK
                     AILLDIAGNFNHTSTTRTTQIDLDGFKRAETNLDRKALLHVKDENGLLQVQAGNITSA
                     GADIINDGQGQTYLSAKNQLNLTALQVGFDEKMGGGNHYRNEALNDVVISRVQGKGDV
                     VVSGKNLYSEGADLDAKARLALLAENDMVLGSATRSRDYEEYHKTKSGGALAKKTKTT
                     YDNISETEHKGTELTGEDILVKAGHDIQGESLLAVSRSGDIDIIGGNNVTLSSATNQL
                     SEQHIRETKRSGFLNGGEIGFTIGSQKTRQENSLEGAIQSTARNTLGSEGGNIRIQAG
                     NKASVSNVDVLISNEKTAVISGKNGVRVESGKDVINSTDNYEFSQSGLSIALSTPVTD
                     AVQSARQSVQKAKATQNEKLKGVYAVKAAEDAVIAAQNAQKVAETLGNLGNALTENHA
                     AAENPAVKISVSLGTQKQQRESRSQSVTHSKSTLNGGNIALISGAGKVALEGVDTRVK
                     DTLLLDGKLGIESKGVADTYQNNTKNKNHSASVGVFIGLDRDSFGIGFEAGVSGGKGK
                     ENIETETWQNNQLQAGKIVTNSANGKLMLDATNVKANHWEGEVQDFEARSRQDISKYK
                     SEYTEGSVHGTLAVGTTGVNGHVAYNGAKLNTAQVENQTAIDIGKSGMDVKVKKNAHF
                     EGAVMTSQAEKENNRFQAGTLTTGDIENHSELKTRSVAISGGTSGVNPMSALSLLGNK
                     NESERSTTKAAIGENIAITLTEDLNAETTLNHLNRDTQNANQKVTKYDISEVKETQEL
                     VKGIGEIAEKAYQIYTHSEREKVTEAKLELGKAQAQKASKEEIGKLEANLDRLQKEFD
                     KNYGTGSKTKRAVEAVTAALQGLAAKDVGQAAVGLASPYLNAEIKKYTEGDTQANLIA
                     HALLGAVEAAATGNNVLAGAAAGAGSEAAADFIVKTLYKGKSTQDLTEAEKQNVALLS
                     QLASGLASGLIGDSTQSAAVGADIGKRAVENNYLSNWQEQKRSQELKSCHGDARCENQ
                     VRLYWGLVDIGQDVSFVSGAVAGVPENLAESVEGLISMFSSPIETIVAMKELIAREDT
                     LSYIANMTKQEYLAKLDKMQVYYEQAGAVGSFNAGKEFGNMMTDVVTALTGAGALVKT
                     GVGTTAKIVTKSGKELAIPKTRSSASLGTCSFHGDMEVKTDKGYRQISSIKVGDKVLA
                     KNERTGITTYQKVQAHYSNPYDYTVYVEVADSKGKYHTIVSNKIHPFFTQVLSGRVPI
                     SSEGHSYNGEIAKAQWVDAQHLQKGYRLLAESGEWQTVTKVKIKQERLKAYNMTVEKD
                     HTYFIRGTNADNEGVWVHNDCWHALPNDAKQVKNIDGYKAYQFTDPKDGKVVTVVQKD
                     LNRFETPNHQAGVDPHFNRLSQQIDAETGRYLSTDNPVDGLYNRAYLRSETLQKIYAN
                     YEKLPNGNYRNKLTRQEIEQPIDIGHMYGWEHRRLSLAAKELNWSQKQFNDYVNARPE
                     NFRLENMSENRSHKNEMPGKHDIQRIKSDMEKFLKEGK"
     gene            complement(17200..18996)
                     /locus_tag="PXC99_000769"
                     /pseudo
     CDS             complement(17200..18996)
                     /locus_tag="PXC99_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250636.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
     gene            19130..20215
                     /gene="queA"
                     /locus_tag="PXC99_000770"
     CDS             19130..20215
                     /gene="queA"
                     /locus_tag="PXC99_000770"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HDL5417247.1"
                     /translation="MLVSDFHFNLPDELIARYPTAERSASRLLHLNGETGEFADQQFV
                     DLYDHINEGDLLIFNNTRVIPARLYGRKPSGGKVEALVERVLDEHRCLAHVKASKAPK
                     EGAELIFGEDKLGEGKGFTATMVARHDTLFELVFNEEQPLFELLQQAGHMPLPPYIDR
                     PDEDADQERYQTVYSKVLGAVAAPTAGLHFDNAMLEKLKAKGVDTAFVTLHVGAGTFQ
                     PVRVETIEDHKMHAEYAEVSQEVVDKILATKAKGKRVIAIGTTSVRSVESAAQAAEKD
                     GKLIAPFFSDTAIFLYPGKTFKVIDALVTNFHLPESTLIMLVSAFAGYRNTMNAYAHA
                     VETKYRFFSYGDAMFINKNPNALSDVP"
     gene            complement(20242..20780)
                     /locus_tag="PXC99_000771"
                     /pseudo
     CDS             complement(20242..20780)
                     /locus_tag="PXC99_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701733.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(20793..23075)
                     /locus_tag="PXC99_000772"
     CDS             complement(20793..23075)
                     /locus_tag="PXC99_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HDL5417248.1"
                     /translation="MTLDRFCIALILFHLPILWLPKAFLFVGIVIGTLVLILSVYLRS
                     KLTAVLGLLVCIGYIQIIQVAKNAEKTTASKTPVQFEISKILKQTDYQTAIATLNTGE
                     KIYLNWQSKQPLLLNQFYQAELALRPISARSNIGNFDRQRWYFANHINMTATVRKVET
                     LAKTDYSLRTNWLNKVKAETDALPTQGFLLALAFGERAWLKTEHWGQFQQTATAHLIA
                     ISGLHIGLAMLFGVYFAKGVQWLCLKSELTALQAVGFSLYFARIVSFITAFGYSYLAG
                     FAVPTARALLAIAFVLLCQVLRRHYTPWQYWGRIVALLILIDPLSLLSDSFWLSILAV
                     ASLILWYQYFPLSRFLNDEYRKKITKFNRLWLSLLHLQIGIWLIFSPVQLYFFEGISA
                     FALLANLIIVPLYSFLLVPLILFTLLTDNLFSTWLLADYLAQFSLWLLDPFSNAWFAL
                     SHWQQWQLLSLNLLVLVLLYCKLYRLSYKKWLSAVAVSLLFNLSFYLPKLFNQTQTEW
                     IMFDVGQGLAMAFIYQQNKAVIYDTGSSWQANDGSRNSMAKMEILPYLKRNGIEVEAI
                     FLSHDDNDHSGGVVELLQAYPKARLISSSKVTYHNINPEPCIAGTSWQFGEWQLLAIY
                     PSHIAERAKNQDSCVILAKNDRLKILLTGDSGVEQERQFAHQLGKIDFLQVGHHGSKS
                     STGETLLSITQPAFAVISAGRWNPWKLPNKQIIERLNRRHINVLNTVETGMIRVKFYP
                     SSIEIEQARGAFSPWYKQFY"
     gene            complement(23217..24431)
                     /gene="sstT"
                     /locus_tag="PXC99_000773"
     CDS             complement(23217..24431)
                     /gene="sstT"
                     /locus_tag="PXC99_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HDL5417249.1"
                     /translation="MSQSLSSKILGGNLVLRIAIGLVLGVLLAFINKEWATSVGVLGQ
                     FFVKSLRAIAPILVFVLVLAAIANKEVGSDSKLKPILVLYVLGTFFAALTAVVLSFMF
                     PTTLELTASPDGLTPPQGIGEILKTVIFNLVDNPLVALSNANFIGILAWSIGLGIAFR
                     HGSASSKAFLNDLANAVSFVVKVVIAFAPIGVFGLVAETVAINGIDAFEDYARLLVVL
                     VGAMLFVALVLNPLLVYWKIRRNPYPLTFTCLRESGVTAFFTRSSAANIPVNMNLAKR
                     LGVRDEIASVAIPLGASINMAGAAITVTVLTLAAAYTQGIQPDFATALLLSVVASICA
                     CGASGVAGGSLLLIPLACSLFNIPNDIAAQVIGVGFVIGVIQDSVETALNSSTDVLFT
                     AAVSYAEDQKSA"
     gene            24686..25048
                     /locus_tag="PXC99_000774"
     CDS             24686..25048
                     /locus_tag="PXC99_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HDL5417250.1"
                     /translation="MKPTNKADFQRVINAAGYSMKGLKAAYINEAAFRQEIWCATILF
                     PLGLILGETNIEKALLVGTVLLVLVTELLNSAVESVVDRIGADFHELSGRAKDIGSAA
                     VFMAMVLLAITWILILFC"
     gene            25085..26728
                     /locus_tag="PXC99_000775"
     CDS             25085..26728
                     /locus_tag="PXC99_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-sugar
                     hydrolase/5'-nucleotidase"
                     /protein_id="HDL5417251.1"
                     /translation="MRLKKTLLSVALLSATSAMAYETGKTYRFTVLHTNDIHGHFWQS
                     DKGEYGLAAQKTLVDNIRKEVAEKGGSVLMLNAGDANTGVPESDMQNARPDIEGMNAI
                     GYDAMVLGNHEFDYPLQILSMQEKWAKFPFISANVINKKTDKPIVKPYVMLERGGLKI
                     AVIGLTTEDTAKLGNPDVTENAFFKNPIETAKNTLAEINQKEKPDVRIALTHMGYYFD
                     GKHGTNAPGDVTMARTLEKGAFDLIIGGHTHDTVCIDEKGQFKAKYTPGEECKPDFQN
                     GTWIVQAGEWGKFVGRADFEFKDGKATLVKYELIPVNLKKTIKKEDGTKEYRLYQPEI
                     KADEATYTLLKKYQDEGDKKLNIEVGRVKGLLDGKREHIRFQQTNLGRLIAQSQMERV
                     KADIGIMNSGGIRTSLEEGVITYKHILTVQPFGNMIATVDLKGQELLDTLTTIALKEV
                     DTGAYPQFAGISMVVDRTAKTISDVKIGGKPFDKEKTYKVSLPDYVAAGGDGYPLLKK
                     HPSYVNTGFIDAEMLKKFFEENKIIEADKYDPKNQIIFK"
     gene            complement(26935..27804)
                     /locus_tag="PXC99_000776"
     CDS             complement(26935..27804)
                     /locus_tag="PXC99_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDL5417252.1"
                     /translation="MSSRGKILNTISSLQNSLTKTEKKIAAAILSQPELLSQCSLSEV
                     AKQLDVGEATFIRFCRTLGFKGYTDFKLELAIELATQNQDNRVLLDTDVSESDTSKDI
                     AEKLKVSLDNVIEETINLLDFNVLEKVVEELRKAKRIFLFGVGSSGLTAEDAKHKLMR
                     IGLQTDAVTNNHFMYMQAALVKEGDLVIGISHSGYSEEIVKSLRFSRANKATTVAITH
                     NLRSPVTEEANYVLINGNRQGHMQGDSIGTKMSQLFVLDLIYTLLVKAEPENALKQKQ
                     KTLNVILEQRVKG"
     gene            complement(27814..>28264)
                     /locus_tag="PXC99_000777"
     CDS             complement(27814..>28264)
                     /locus_tag="PXC99_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HDL5417253.1"
                     /translation="LSRDDYLKSLPPVFARLCKKLKSLDLVNLELGWQELENGIRMNV
                     MSFETTPAEGKKAELHRKFIDIQLLIDGEEMIEYGLSQPDLSKYDEYRDEDDYQLTAE
                     IDDKNNLILKPNMFAIFLPYEPHKPGNSVNGNKTLKKLVVKVPVELI"
BASE COUNT         7845 a         6354 c         5449 g         8616 t
ORIGIN      
        1 taataaaggg ataaagttaa ttgtcttatt taacaacaaa caggaaattt tggtaagctc
       61 cgaaaataac aagaaaggaa aaacagcact attttatcca aattaccaat acctgagttt
      121 taaacaagcg gttattttta gccgtttttt tgcaaaattt gaagaaaaaa taaccgcttg
      181 tcttgttatg tcgagaactt aaaatttcat ctccattccc aacataaaat ttcgtcccat
      241 ttgtggtaca aattggtgat acgaagtgtg gatatacacc ggctgattca gtaagtttgt
      301 gccgtttaga ctgattttgt aatccagctc tttccactta ttgctatacg acaacccgac
      361 attcaacatc gtattacctt cggtaatata ttccaactgg ctcgtacggc gttgggtaaa
      421 ggtgcggatc agctctaaat cccccgacca atttggggta aattccgcat taaagcgaaa
      481 acctaaacgc attggcggtg tacgaggggt gttttggtca gcccgatata gaagataatc
      541 tttccctttt tccacatttt ccggcagata atctttgaac acactataat cgctatttat
      601 cttcaatggt ggtaaatttg ttagccagcc tcgtaccata tcgccgaaaa tcgtggcttg
      661 gtattggtcg ttaaagcggt agcttgcctc tgcttctacc ccgtaaaaac gggcttttgc
      721 ctgattataa cggcgcataa atagctgatt ttcacggaaa agattttcat tgtagatgta
      781 gtttttaaag tgattgtaat aaacactcac tttatagcca atacgttcag cttgatagcc
      841 caagcccaac tccacattat ttgactgctc ttttttcaag tctttattgc cgtattcaaa
      901 cgaattagta gcaatatgct gcccgtgata atacagctcc attggcgttg gcaagcgttc
      961 attgtgcgag gcagtaaacg aaagctgata gtcagggtgg aagaaccagt taagcgtgcc
     1021 ggaataggca taagccgttt catcataggg tgaaagatct ggctcaacct gtttgccgcc
     1081 actgatacgg tagtgttctt gtaaccgttt gatttcattg cgatcatact caatctcaat
     1141 cttctgcttt tccattcgtc cggcaagctc aacagcaacg ctatcccaca tatactgctc
     1201 aaccccaaac aggctgaact gtttattggt attttcaacc agcgggaatt tcacttcgcg
     1261 atctttcggc gcattcatac tgcttttttg cgtttgatac tgaacacccc atacaccggt
     1321 taagccacct agcggtgcgt gatagacctc caagcgggta tttttgcccc gatttttgaa
     1381 aatattcacc ggcttgccgt aatcctgatc ttttttcagc tgtttatggt aacgggtggc
     1441 aagcacgcct gcatcttttt catcgtggta ataatcggca tcagcatagc ttgccttaat
     1501 tttatctacg cccttaaacg gctggcgtag ctcggctttc acatcaatcc gttttgattc
     1561 taaatccacc cacgggcctt tgtgagtgtg atcgtgggcg tgtccgaacg ggttatcgtg
     1621 gctgtgtgtg ccgtcctcgg cgtggttggt tccacagtgg aagtgcggat tgctcccaat
     1681 attttcctca ccaatcaaat gcggatagag ataggtataa gcgtatttat cccgcttatt
     1741 accgtagata tgaccggtac agaaatcaaa tttatggtta tgccccggca agccataatt
     1801 atcccgccgt ttgctgtatg aggcaccaat atagcctcgt tcaccgacaa aggataagcc
     1861 caacgtgccg actttggatt tattgtaagt gtccggcaca tagtttaagc gctcgcctaa
     1921 gttgatcccc ggcacacggt agttatcact atgacgactc agcccttcga ctcgcaccgc
     1981 aatgtggtta ccgatgccaa aggttgcccc taatgcgccg actttctctt tggcggcggt
     2041 atcaaaacgg ctattgagtt caacctcata tcccttttca ggaatagcgg tcggaatacg
     2101 tttatccacc acatttacaa ttcctaccgg cgaactgctg gcataaagca aggtgctgga
     2161 accacgcaag atttcgacct gatcggcaag cagtgaatca gcaacaacgg cgtgatcagg
     2221 agataggttc gacatatcaa tcacgtctga accgttttgc aaaatgcgaa ttctcgcccc
     2281 ttcctgccca cgaataatcg gcttactcgc tccgccacca aacgggttac tatgcacgcc
     2341 taattctgac gccaacgcat tacccagcgt tgccgaacgc tttttaaatt ccttacctgc
     2401 aataatttta tcactgactt ttagcaaggt aacttcactc ccctgcgata tacttggagt
     2461 gctgccaacg accgaaactt catctaacac cgctacatcg ttattttccg cccaaacaag
     2521 cgggctaaat tgagccgaaa tcagcaatgc caatcctgtt ttcttaaaca caatctttct
     2581 ccttaaaaaa attaaggata ataaggtact gcaaaatatg agtctttaca ataataacca
     2641 taaaaaaatt atatttttta aattttccct attgccaaac aggaaatata tccattaaaa
     2701 ttttatggat ttaatctgac ggagacaaaa tatgcgttct acattcaaac ttactcttgc
     2761 agctttagct gtttctattg ttttaagtgg ctgtaaatct agccaaggtc catctattgt
     2821 tgcagacagc cctccaccta aggaaataac agctactgat ggcaacgata aagagaaaac
     2881 cgataacaaa gagaaaaagt ctgcgcaacc aaataaatcc gatcctcaac cggataaacc
     2941 tgctaacgca aaagacccag taaaacctga tgcggagaca aataaaccaa gtaaaaaaga
     3001 taaagaatat acaccacctg ctactgaaaa aatcgataac tcatcagtac agccggataa
     3061 aatggtgcct aatcctatcg agaataagga aaacgacagt aataaaccta accccaaaga
     3121 aagcgatagc gataataatg acaaagtcac tgaaggcaat aaaccaaatg ccccaacaga
     3181 aacagtaaat aaagataaag aagctgagaa aagtaaaaag gagaataaag aggactcaag
     3241 caataatact cctaacatta attttgacgg ggcaaagcct atagatacag atagtaaagg
     3301 tagcccgtac cgagtaataa acctaaatcc gagaaaaagc gtagtaaatg caagtgctat
     3361 gcaaaaagta gatttcgact cttttacgga tgaatctgtt gaaaattcac catttgtcag
     3421 tagcgatact gaaaaagaat acaataatac acttgttttt gggcttggtg ccggagataa
     3481 agattcttat tttaagaact taaatcaaaa aggggataaa catttaggta ttcatagtgg
     3541 cgtgtatgaa gatgcgaatt tagaaggtaa tactaaaaaa attaactatc tctatgtaaa
     3601 tcaaccttat tcgagctatg gtgctttatt tacggaccaa aaagacagcc atttattcaa
     3661 cgttcgtctg accgctggta gagatgatgt aaaagaaaat ggagatagtt atgccgaata
     3721 tggtgtattc acacaatcag gaaaagaagc taaatggaat gataacctga ttggtgatgc
     3781 cacttacaaa ggtcaagcta ttgctcgcgt tattcgtcag gtaaatgggg aacaagtcgc
     3841 aggtattcct caatttgatg gtgatgttac attaaattta cacctttcca aagaatggaa
     3901 tgaaagtaaa ctaaacggca aaattgatag ccaaagtgtt ggggtaatta cacttaaaga
     3961 aagtgaaata gctaacccta ccgcactccg ctcaaatatt ggttttggag aagaagtcat
     4021 agttgagaat aaagagaatc ttgtgggtga ttacgctgtc gattttaccg ggcctcagct
     4081 tgaagaggcg gtaggcgttg ttgaattaga aaacgaagcc gagacattct ctgaaaatga
     4141 agtcattaaa tacaatgcgg tatttggcgt aagcaaagcg gcgaaatagt attttttgta
     4201 tcttacaaag ggctgttaag cccttttatt tttattattt taaggataaa aaatgaaaaa
     4261 aattgcctta ctggcacttt tcccaatgat gttatttgcc cgagatccta atactacaca
     4321 ggcttatatt gagcatactg cacagccaac tacaaccccc caaagggtca agatcgaaaa
     4381 atcagtgcct atttttaacg aaactgaatt acgtgctaat caattattga ccgaaaagct
     4441 acttatccaa gctatttata gtcgtaggct tgctaacatg gaaaaattaa ctgcgattta
     4501 tcgggatttt acccacattg acccggtttt actgcgttat gcacaaggta aaattgccct
     4561 actgaaaggc gattacgcac aggcaattca gcacttccaa accattcttg ccaaacaacc
     4621 caaactaaac actgtaagaa ttgagctggc gattgctcta ttgtacgatc agcaacttaa
     4681 tcaagcccaa gcacaatttg aaaaagccaa aagtgccgaa catctaccgc ctaaagttca
     4741 cgcattaatt gagcaatatc agcaacatct ggcaaaaaaa caggaatgga aatttagttt
     4801 ttcagccaat tatgtgcgag acggcaacat taaccgaacc tcgaaacagc cgaacattga
     4861 gcaaaccggc tatgtaaaac aacctaattt gttgccccaa accgcacatg gtgttcacta
     4921 tgcgtttgga ttacagagag atttcaacct gttcgactca cactatgtga gttttgacaa
     4981 ccaaacccaa ggtgaacttt attgggataa ccacgattat gatgaaatta ccaatcgcac
     5041 cttgtttgga tacgcttaca aaaaatccga ccaaaccacc cgcttgttac cgttttatga
     5101 aaaacgctgg aaacatcacc gttcggaacg ctggacaaac ggaattcgac ttgaacacgc
     5161 acaatggttt tcaccgcatt ggcaactcgc caccgcattg gaatacggca aaaaacgtta
     5221 ttttgatttg ccgatttata acggcagcta caaacttgcc tctgccacat tgctttggtt
     5281 acgcaatcca caacaatttt tctttgtcgg cactgatttc aatcaagaca aaactcagtt
     5341 aaaacaatat agctctgata ctaaaggcat acgctttggc tggcaacgag aatggcaagc
     5401 cctcgagctt tccagtcgcc tcacgcttgg ctatactgac agacgttaca aagacaccgc
     5461 tatattggga ggaaaactta atcttggcag aatccgccat gaccgtgtgc aaagtgctaa
     5521 cctcacgctt tggaaacgag attggcactg gctcggcctg atgccgaagc tgcaatttag
     5581 ttacgccaaa caccgtagca acctgccgag cctctatgcc tacaccgata aaaacatcaa
     5641 tttaattatt gaaagtcggt tctagctcca taaaaacaac aagcggttaa aattcctaga
     5701 aattttgcaa attgcaaaaa atgtagaaaa tttaaccgct tgtatctata ctgcagcttc
     5761 ttttccttca gtataaatta atatacaccg ttgcaacaat aatggctgct ccctgtcatc
     5821 accttgaact gaaaattgct caaggtggat atgactatcg cagccgcttc caccgcaccc
     5881 agtaatgtat gggcaagcag gttggcttgg gtatctactt tttaatttgt tcgttgagat
     5941 atggcgaagc taagcctact gctgcttgtc ctgaatcttt cgccgctaaa ccttgtaagg
     6001 ctgccgtcac cgcatccacc gcacgcttgg ttttgctgcc cgtgccgtag gcgttatcaa
     6061 aagtctgctg tttatcgttt aaatcccgtt ttaattggag atattcagga tgttgagcga
     6121 tttcttcttt tgtttttccc tcatttctca aacgggtttc cactttgccc aattccagct
     6181 tcgcttccgt cactttttca cgctcactat gcgtgtaaat ctgataagcc ttctgcaatc
     6241 tcgcctatgc ccttcaccag ctcctgtgtt tctttcacct cactaatatc gtgttctatt
     6301 aactctatct ctttaggaac tgctccaatc atagacaatg gaataacttg atctttattt
     6361 tcaatattcg gatctgcccc cgcatttaat aatgctatcg ctgcatcaac attctttgcc
     6421 ctcattgcat aatgtaaagg ggtcattccg tagcaatctt gggcattaac atctacccca
     6481 tgtttaatgt aaaattcgac tacagaaaga ggagatggtg aataactatt taagttacac
     6541 atatgtagcc agttccattt ttcttttggt gtgctatccg taatagtcag ttcacctttt
     6601 acgaaaaatg tttcttgtaa aagatcgaga tcgccttctg agtttgctgc aataactctt
     6661 aattcaggat cttgatcata taattcttga taacgttcta atgtctgctg acgttcttta
     6721 ttcttatctc tcattttact ttcctatttg ttggaatttt ttcatgtcat cgattattga
     6781 tttaatatta tctttccccg gcatctcatt cttatgactc cgattttcag atatattttc
     6841 taatctgaaa ttctccggtc tcgcattaac ataatcatta aattgttttt gactccaatt
     6901 taattctttt gccgctaatg ataatcggcg atgttcccag caatatatat tctatgcatg
     6961 cactaagcat atttcagcat tagttcatat ataggtgcta aattaggctc catctctgtt
     7021 ggtttatagc tttccaatat cgtttcattt ttattaacta aaaaatgtac attcgcacct
     7081 ttctctaaca taagttctaa aacatctaat ctatcaggta aataccctat cattgataaa
     7141 ggtattaaat tatcttgatt tggaatattc ggatctgccc ccgcatttaa taatgctatc
     7201 gctgcatcaa cattctttgc cctcattgca taatgtaaag gggtcattcc gtagcaatct
     7261 tgggcattta tttccactcc attttgtata taaaattcaa tcacagaaag tggtgctggt
     7321 gcataagaat taagattaca ttgatgtaac caattccatc tttctaatgg tgtaacataa
     7381 gagaatgcta attgcttttt atataaaaaa atatcttcta atactccaat gttaccttcg
     7441 ccatctgcaa tggcaactag cattgagggt tcatctttat atttttcata taattcattc
     7501 atattattta ccttctttta agaatttttc catatcggat ttgattcgtt gaatatcatg
     7561 ttttcctggc atctcattct tatggctacg attttcagac atattttcta atctgaaatt
     7621 ctccggtctc gcattaacat aatcattaaa ttgtttttga ctccaattta attcttttgc
     7681 cgctaatgat aatcggcgat gttcccagcc atacatatga cctatatcaa taggctgttc
     7741 aatttcttga cgggttaatt tattgcgata attaccattt ggcaattttt cataattagc
     7801 ataaattttc tgtaacgttt ccgagcgtaa ataagctcgg ttatatagcc catctaccgg
     7861 attatctgtc gataaatagc gtcccgtttc ggcatcaatt tgctgagaca aacggttaaa
     7921 atgtggatct accccggctt gatggtttgg cgtttcaaaa cgattgagat ctttttgaac
     7981 tactgtcacc actttcccgt ctttcgggtc tgtgaactga taagctttat agccatcaat
     8041 attttttacc tgtttggcat cattcggtaa agcgtgccaa caatcattat gcacccatac
     8101 cccttcatta tcggcatttg tacctctaat aaagtaagta tgatctttct ctaccgtcat
     8161 attgtaggct tttaatcttt cctgtttgat ttttacctta gtgacagtct gccactcacc
     8221 actttcagca agtaagcgat agcctttttg caaatgttga gcatcaaccc actgagcttt
     8281 tgctatctct ccgttgtaag aatgcccctc cgaagaaatc ggcactctgc ccgataatac
     8341 ttgcgtaaag aacgggtgga ttttgtttga cacaatggtg tggtattttc ctttgctgtc
     8401 tgcgacttct acatacaccg tataatcgta tggattactg taatgagctt ggactttctg
     8461 ataggtggtt ataccggtgc gttcattttt cgccagcacc ttatcgccca ctttaatgct
     8521 ggaaatctgt cgataacctt tatcagtttt gacttccata tcaccgtgga atgagcaagt
     8581 gcctaaacta gcgctcgatc tggtcttagg aatcgcaagt tctttacctg atttggtgac
     8641 tattttcgcc gttgtcccta cacctgtttt aacaagagca ccagcaccgg ttaatgctgt
     8701 caccacatca gtcatcatat tgccaaactc ttttccggca ttaaaagaac ctacagcccc
     8761 tgcctgttca tagtaaacct gcattttatc gagtttagct aaatactcct gtttagtcat
     8821 attagcaata taggagagcg tatcttctct tgcgatcaat tctttcatcg ccacaatagt
     8881 ttctattggg cttgagaaca tggagatcaa tccttcaacg ctctcagcga gattctcagg
     8941 aacaccagca acggcgcctg atacaaaact aacatcttgc ccaatatcaa ctaatcccca
     9001 atataatcga acttggtttt cacagcgggc atcaccatgg caggatttta attcttgtga
     9061 gcgtttctgc tcctgccagt tcgagaggta gttattctcc actgcccttt tcccaatatc
     9121 cgccccaacc gctgccgatt gtgtactatc ccctatcaaa cctgaagcca gtccgcttgc
     9181 aagctggctt agcaacgcca cattctgttt ctcggcttcg gttaagtctt gcgtggattt
     9241 gcccttgtag agggttttaa ctataaagtc cgctgccgct tcgctccctg cgcctgcagc
     9301 agcccctgcc agtacattgt tccctgtcgc agccgcttcc accgcaccca gtaaggcgtg
     9361 ggcaatcagg ttggcttggg tatccccttc ggtgtacttt ttgatttctg catttaagta
     9421 tggtgaggct aaacccactg ccgcttgtcc cacgtctttc gccgctaaac cttgcaaggc
     9481 tgccgtcacc gcttccaccg ctcgtttggt tttactgccc gtgccgtagt ttttatcaaa
     9541 ctctttttgc aagcggtcta aattggcttc taatttacca atctcttcct tgctcgcttt
     9601 ttgagcttgt gctttgccca attccagctt cgcttccgtc actttttcac gctcactatg
     9661 cgtgtaaatc tgataagcct tttctgcaat ctcgcctatg cctttcacca gctcttgtgt
     9721 ttctttcacc tcactgatat cgtatttcgt cactttttga ttggcgtttt gcgtatctcg
     9781 gttgagatga ttaagcgtag tttccgcatt taggtcttcg gtgagggtga tagcgatatt
     9841 ttctccaatc gctgcctttg ttgtgcttcg ctcgctttcg tttttattgc ccagtaagct
     9901 cagtgccgac atcgggttca ccccacttgt ccctccgcta atcgcgacac ttcgggtttt
     9961 caattcactg tggttttcaa tatcgccggt ggtcagcgtg ccggcttgga agcggttgtt
    10021 ttctttctcc gcttggctag tcattaccgc tccctcaaaa tgggcgttct ttttcacttt
    10081 aacgtccatt ccactcttgc ctatgtcgat tgcagtttgg ttttccacct gagcagtgtt
    10141 caacttcgct ccattatatg ccacatgacc atttactcct gttgtcccta ccgccaatgt
    10201 gccatgtacg ctgccttctg tgtattcgct tttatatttg cttatatctt gtcgacttct
    10261 tgcctcaaaa tcttgtacct caccttccca atgatttgct ttgacattgg ttgcatccag
    10321 catgagttta ccatttgcag aatttgtaac aattttaccc gcttgcagtt ggttgttctg
    10381 ccacgtttca gtttcgatat tctccttgcc tttacctcca ctcactcctg cctcaaaacc
    10441 aataccaaaa ctatctctat ctaaaccgat aaatacgccc acactcgcac tgtgattctt
    10501 attcttagtg ttgttttgat aagtatccgc aacacctttg gattcaatac ccagcttacc
    10561 gtcaagcagc agggtgtctt tcactcgggt atccacccct tccagcgcaa ctttgcccgc
    10621 tcccgaaatc aaggcaatat tgccgccgtt cagggtgctt ttgctgtggg tcacgctttg
    10681 actacggctt tctctttgct gtttttgcgt gccgagactg actgaaatct tcaccgccgg
    10741 attttctgcc gcagcatggt tttctgtgag tgcattgcca agattgccca gcgtttctgc
    10801 cactttctga gcattttgtg ctgcaatcac ggcatcctcc gccgctttta ccgcatatac
    10861 ccctttgagt ttctcgtttt gtgttgcctt cgctttttgc accgattgcc gtgccgattg
    10921 caccgcatcc gttaccggtg tactcaacgc aatgcttaag cccgactggc taaattcata
    10981 attatcggtg ctgttaataa catctttccc tgattcaacc cgtaccccgt ttttgcctga
    11041 aatcacggcg gttttttcgt tggaaatcag cacatcgaca ttgctcacgc tcgctttatt
    11101 gccggcttga atccgaatat tgcccccttc actgcccaat gtattgcgtg ccgtgctttg
    11161 gattgccccc tctaagctgt tctcttggcg tgttttttgg ctaccgatag taaagccgat
    11221 ttcaccaccg ttcaagaaac cgctgcgttt tgtctcacga atatgctgtt ctgaaagttg
    11281 gtttgttgcc gaactgagcg ttacattatt accgccgata atatcaatat cgccactgcg
    11341 tgagacggca agaagacttt caccttgaat atcgtgaccg gctttcacta aaatgtcttc
    11401 accggttagt tcagtgcctt tgtgttcggt ttcagaaata ttgtcataag tcgtttttgt
    11461 tttcttcgct agcgcaccac cactttttgt tttgtgatac tcttcataat cgcgagaacg
    11521 tgttgcgcta cccaacacca tatcattttc agccagtaac gctaaacgcg ctttggcatc
    11581 caaatccgct ccttcactgt aaaggttttt ccctgaaacc accacatcgc ctttgccttg
    11641 cacccgtgaa atgaccacat cattcaaggc ttcattacga tagtgattgc caccgcccat
    11701 tttttcatca aaaccaacct gtaaagcggt caaattcaac tgattttttg cagataagta
    11761 ggtctgcccc tgtccgtcat tgatgatgtc tgcgcctgct gaggtgatgt tgcctgcctg
    11821 tacttgcagc agtccatttt catctttaac gtgcagtagg gctttgcggt caaggttggt
    11881 ttcagcgcgt ttgaaaccgt ctaggtcaat ctgtgtggtt cgagtggtgg aggtatggtt
    11941 aaaattgccc gcaatatcca gcaaaatcgc tttatccgct tcaatcttgc cgccgatatt
    12001 ctctagatca ccgctcactt tggcagcaag cacgccacca ctgagtgtgc cactattctc
    12061 taaccgttcg gcattaaact gtgctaaacg gcggcctgct atcgtgcctt ggtttacaat
    12121 ctctttactg ttgatggtaa gcgcatcggc tgaaatcagg ctgcctttgc cgtcaatatc
    12181 acctttgcgt gcaagggcat acactttcgg cactaatacc gataccgttt caccgcttgg
    12241 caagcgaacc gtttgggttt caaaccaaac aatatcgctg gtcaagcttg ccacttgctc
    12301 cggcgataag gtaatgccta accgaagatt gaatttctgc gcaaaggtga tgccggcatc
    12361 catcagggct ttatattggc tatcaaaatc cgtatagtcg cccaaaaatt gtctgccggt
    12421 taagcggttg atttgctctc gaattaagcg ctgttcataa aaaccatcgc ccaaacgttt
    12481 atgcacattg ttatggtcgt ggcgtagggc attgaacata taatcactgc ttaaccagcg
    12541 ttttttatcg gtgaaatccg gatcggtttc gatcagaaca tggctatccg cttgagggtt
    12601 aatgcgataa agcccttggt ttggcaaacg ggtatcgacc gtcattgagc gaacctcaaa
    12661 tgcggctgca ttcgggcttg gtatgcgttc aatcgccatt gttggcggat taggggcatc
    12721 gggtagatta ccccgttcaa cctgattgcc ttccggcttc acggcatttg ctgctttagc
    12781 gtccacataa tctgtataag cggtcggtga agtattttcc agctcgacaa aaatattcat
    12841 atccttatgg acttctttta aacgagcgag aggaccatca ttttcatcgt agcgggagtg
    12901 gcgacgtctt gtgcctccgt ggtactcagt aaaagagaat tggcgccttc ccagttccca
    12961 atcttggcga acagcatctg catcatcaag gttggcaatt ctactgcgac caatcgggtt
    13021 taacgctttg cctgcaataa cccaactttt atcgttgata aattcatcgc tttgataagt
    13081 gagatcgcca cctgccaaga tctgtgccgg taagctggct ttggtgatat tctcttttac
    13141 catacgctct ttaatccaca aattccagaa atgcgggtat tcttggctta aattcgcttt
    13201 attgtgcttt gcaatcgctt catctaatgc ttgaatattg gcaccatatt ttgcttccca
    13261 atcaattaac ggttttaata gcacataacg ctgataagcc gcttctgccg cttcataggc
    13321 tttcagttcc gcttgatatg tttgtagtcg tttttggtat tgggcttccg tttccgtaga
    13381 gcctctaaca ggttcaatcg gtcttgccgg aaccaccggt gcaatgcctt gcccttgttc
    13441 cttctgtaat ttttcctgct ctgcctcact taaatgctga ttcgctaaat cttcttcatt
    13501 cattgcttga ataatttcag gcgtcatttc cggtgcatct tcagctggtg gtgttaaatt
    13561 aaaccacgtc catactgggt tatctttttt ataattacct gcaggtaata gagtacaatc
    13621 tacactttca tcattcgcac agctttgagc atagggtttt gccaatacgg tcgtggcatt
    13681 cagctggcta atatcggtaa ttaccggcaa gtttgcttca tcatactttt gccaatagct
    13741 ccacgttttg cgatagtagc ctttgcggag ttgattcaca ttaattgtcg gcaaatgccc
    13801 gttatcatat acatcacttc cacctcgatt atgcttatct cttggcaaaa taaaatgttc
    13861 gttcacagtt tggcgatcag tggtctccaa ttccgaacga taatgactat ttacattcgc
    13921 taccttatcc gcattcaact gaatacgccc ttcagcttca ataatactgc tgcggttatg
    13981 tagctgccct gcgttgccaa taacggtatc ttgctcattt aattgacgtc caatcgctat
    14041 ctctcctccg ctatatatta atgaaccgct tttcttattc gcttcataaa ctagggtatt
    14101 attttcaatt actttagccg ctaaaccgag agattgacga gcagcaatag tggcagaggt
    14161 cccgtcttta tcttgattta gtatcctctc cgcacctaac gccaccttat cgccataaat
    14221 attccctgtg ccgatattgt ggatttcttg agctttaatc acagtttgag cgttatcgtt
    14281 gtccgagcgg ctattgatta agccttcgtt atagacggtt gaagttgcag tcaaacgggt
    14341 atctgccgag cttattcggg cattttgtgc attggttatt tggtttgccg tgagctgcaa
    14401 gcggtcattt gcggctaatt ttttgcgatt gagaatatcg ccctcagtct gaataatcat
    14461 cgacctattc gcattgatat ctttggtaat atcaaagttc tcttgcaaat tcaggcgaat
    14521 atcgcctgct tgtacatcac catcaccgga taacgctttg gcagtgatct ccaaaccatt
    14581 atttgcagaa acttttccct cggtattcgt cattgtgagt gattttccgc cgaaaatagc
    14641 cagatcgccc caacttaaaa tttccccatt acggttattt aagctgtcgc tgagggtaaa
    14701 tcgtgctgat gagccgatat aaataccgcc tttttcatta ttgagctgtt ttgtgctgtt
    14761 cagtacaaac tgcgatgcaa taatcccctg tattggctga ggttggcgtg ccaaggtacc
    14821 ttgattttcc acctcgaaac tgttcatcgt aagtgagcca cctgcttcaa taagtgagcc
    14881 attttccgag atccgattat ttaagacagt cggtacattg agcgtgatat ctgtggccga
    14941 tttcagtacc ccaccttggt tatccaaaag cgtgctattt agggtgagat ttcccacact
    15001 ttgaataaca ccgtgccgat tatctacttg ttgggaaacc gtgagcgcta actcttttac
    15061 tgaactaatt tctccctgct cacggttatc taaggattga gcgttaatcg caacaccgct
    15121 ggcggaaatt cgcccgcctt gattttgcag ttcgctagtt atatcaaggg tttgctccgt
    15181 ttgagaggtg atcacccccg attgattttt taacgtattg accgtaatcg cctgtttttc
    15241 gccactcaaa atcagacctt gctgattatt cagcaatgga gcacgaatag ataactcgcc
    15301 ttttgcaacc aatttgccat cgactgaatc cacagcatca tttaaattta gccctaaacg
    15361 cttgccacta cttaatagcc cttggttatt tgttaaacga ttaccgtcaa tctcaaaatg
    15421 tccacccact gaaaagcgag ccgagtcagt atggatactc tctgctttta ggcgaaaatc
    15481 ctgctcacca gtctgcttcc aaaccgagcc acgagcattt aaattcgctt gttgggcctc
    15541 aatcacctct gcggttagct ggcttccttc agtggaaagc cattttgggg tggtgagctt
    15601 gatctgattt gcactaaact gcgcactatt cgcctgaata tcgcccgatt ttgcactgta
    15661 ttcaacggta tgggcattat tttggctctg attggcatca atctcagctg ccgccacgtt
    15721 aattttcccc gaagcgatat tttttccctg cacagtggtt ttttctgggg cagtgagttg
    15781 aatagttttc cctgccacag attgagcttc cagcttccgt acttcacctt gtgcagtgtc
    15841 ggttacgtcc accccagcgg caatcagtga gtttttgtcg gcgtgaattt ggcgggcggt
    15901 gtaggtgata ttgccttttg cgaccgtttc gccactttgc tggattttag tttcggcttt
    15961 tttctgaata ttgccacccc tcgccacgat ggaaccgcta ttttgaatat cggctttcga
    16021 gttaagctga atattgccct gtttattttc aattttgcct tggttgtcaa tcccgtgttg
    16081 ggcattgagt tgcacttgtc tttgagcgtt gaacgtgccg ctgtttacaa tccgcccttg
    16141 actgtcaatg gtgagcgtat cggcacttgc accgatatgc ccagcgttac gcacgcccac
    16201 gccctgttcc gtaccaatca ggtggatttt gccggcatac attccgccca gctcacccac
    16261 atcaatcgca actgtgggct tttcttcccc tgcaagcggt tgatttgtat gaataatttg
    16321 caaattgttg tccgaatttg accgcttgac ggtgtttttg ccggtaatga ctttagtctc
    16381 ttttttcgac cagacaccgg cgttgatttt cgcttctcgg gcgaggatat cggtgtaatc
    16441 cactcggctg ttgtccagcc ctttgccagc aaccgttacc ttgccttttt ccactacaaa
    16501 accttctaaa ttgccttgat ttatctgtgg ttttccggtg gtcagcgtgg ctcggtcggc
    16561 gttgataata ccgcagccgt cacagtgcaa gccgctcggg ttggcgataa tcacttccgc
    16621 ttttttgcca gccacttcca cataaccttt cattaccgaa ggcttactgg aattgacttc
    16681 atttaaaatc accttcgctt cgccacgggc aagatacggg ttgccttgca ccataccggc
    16741 ttgttgggtg gcggtgttgg tgcggctgtt gttgagaatt gcccccttct ccgctacgtc
    16801 aaattggctg tatttattgt gggaaagccc tttatcgttc ggggtttgaa tattgatttg
    16861 tggcagcccg ttggcggttt gcaaaataat cggttgctga tttttcgggg cagtgctatc
    16921 ggcttgaata atcaaagttt ccgccatagc gttgtctgat aaggtaacga atcccaacgc
    16981 acagaacaag ctgaacgcaa gcggtcgaat tttgcaaatt ttttgtaaaa ttgcaccgct
    17041 tgtcatactt tcactttctg atttacctgc taattttgct aattcagata ccaccacaat
    17101 acgttgtaag gtcttgctga aaatagtgcg aaaacaatgc ttattcataa taattcctta
    17161 atagcacaat atacttaata caatatgccc aatcattcat taaaaattgt aaccaatatt
    17221 aaaaccggca acggtgtctg aggttttaaa cccttccggt tttcgcatcg gtctaccggc
    17281 aaacacgtca taactaaatc ctttaactcc accccgaaac ccaatggctg ttcccattaa
    17341 atgatgtccg agctgatttt ccgttgccca accggacact cgaccaccat ctaccgccca
    17401 ataaaaagcg tggttcggat taaattgcca gctcaactca ttacgccagt tccagccccg
    17461 ctcaccggaa agagtcagtt caccgtcaaa tccacgtatg gtgtaacgcc cgccaatcga
    17521 aaaacggtct tgcggaacca gaggggtttt attccattgg gcatttaggc tactttgcca
    17581 ctgccatggc tgcttgcccc aaaaaaacgg tttcgtcagg cttgcacttg ccgtgatgat
    17641 tttagggcga gaagtccctt cgccataatc ttcctcggga gcagataatg cccctcgtgc
    17701 tgccgtacct cgtttgaaat tagccgaaag ctcaagcgta gcggtcggga aatattcttt
    17761 atgcgaaaaa cccgcttccc aacctgccat tcggcgtttt tgtacttcaa tttctgagcc
    17821 gtcaatatag ttttgcgact ggcgtggcca aagtgaaccg gacaagctcg ttttacgttt
    17881 ggcatcacga taaagcaaat aagaaaaggt taatttatcg gtatcacttt caccggcgta
    17941 gagatagctc ttgtcaaagg caccaaatac ttcttgatga taacgatgat gagtgtgtga
    18001 aaatgctaac tgccaatagc caaacggcac ggaatagtaa agcgtgagat ttttactggc
    18061 acgtctgccg ttatcatcac ctttttgttt catcgaatgg gtaaaagagg tatagaacag
    18121 gtcatttgcc gaaaaaatat tatctataga cagagtggcg gaggtttgta atttgcctgt
    18181 ggatttcgag ccggcatcgt ccagcccaag atttaagcga aatggaaacg cttgcgaata
    18241 gctgattttt aaatcactgt ctcccacctc cgctttttcg cttgagctgg gtaaaatctc
    18301 aatatttgcc tccgccgtcg gcacccgttt tagattttcc agagactgct caatatctcg
    18361 cacattcaga atatcgcctt cggcaaaagt aaaaccggtt aaggcgtgca gcttggtaaa
    18421 acgcggtact ttgccgctat ctaccactaa agtattgcgt attttgcccg gaatcacggt
    18481 taaaactaat tttccgccac gtaaatcttg ctccgcagta accactcgtg tagtgacata
    18541 acctttgcca ataatttcat tttggatttg cttcatcaac acagctaacc cttcaccacc
    18601 aaagcagtga ggtaatgtca aatgaaatga ttttactgct ttttcaaacg cccattggaa
    18661 ttggctggta gtcagagaat tgtcaggaga atagtcaatg agagtgattt gatgaatggg
    18721 gtaacaaggc aattcgtgat tggaaagagt aagtgtatca ttgatttgtg tctcgagccg
    18781 tacatcagct ttcggctgga atttttctgc ttgattttgt tggtattgct gttagcgatg
    18841 ttgctgggca gcatcaattt gttgttgagt tgcatcaatg cgtgcttgtt gtacaaggct
    18901 tgaagaattt gcttcagcaa caaaagaagc acttaacaat accgtgctta aaatcagatt
    18961 ttgtggggtt ttcataagat caaataagta agacattcaa cgtttttagt ctataaaaat
    19021 ttatgttgtt ttgcaaactc cgttttatgg agctttatac atatctgacg actttggttt
    19081 tttatgctat tatctccgcc atttttatac tatagagaat agaataaccg tgttagtttc
    19141 agattttcat ttcaacttac ccgatgagct gattgctcgc tacccgactg ccgaacgctc
    19201 tgccagccgt ttattacact taaatggcga aacaggcgaa tttgccgatc aacaatttgt
    19261 ggatttatac gatcatatca acgaaggcga tctattgatc ttcaataaca ctcgagtgat
    19321 cccggctcgc ctttacggtc gaaaacctag tggcggcaaa gtagaggcat tagtggaacg
    19381 ggtgctagat gaacaccgct gcttggctca cgttaaagcc tcaaaagcac cgaaagaagg
    19441 ggctgaattg atctttgggg aagataagct aggtgaaggc aaaggcttta cggcgacaat
    19501 ggtagctcgc cacgatactc tgtttgaatt ggtgtttaac gaagagcaac cgttattcga
    19561 attgctacag caagctggtc atatgcctct tccaccttat atcgaccgcc ccgatgaaga
    19621 tgctgaccaa gagcgttatc aaaccgttta tagcaaagtg ttaggtgcag ttgccgcccc
    19681 taccgccggt ttgcattttg acaatgcaat gcttgaaaaa ctaaaagcaa aaggggtgga
    19741 tactgccttc gtaacattgc acgttggtgc cggcactttc cagccggtac gggtagaaac
    19801 cattgaagat cataaaatgc acgccgaata tgccgaagtg agccaagaag tagtcgataa
    19861 aattctcgca acgaaagcca aaggaaaaag agtgattgca attggtacga catcagtacg
    19921 ttcggttgaa agtgccgccc aagcggctga aaaagatggg aaattgattg ctccgttctt
    19981 ttctgacacc gctattttcc tttacccggg aaaaaccttt aaagtcattg atgcgttagt
    20041 caccaatttc catttaccgg aatccacgct aattatgtta gtctcagcat ttgccggcta
    20101 tagaaatacg atgaatgcct acgcccacgc agtagaaact aaataccgtt ttttcagcta
    20161 tggcgatgcg atgtttatca ataaaaaccc aaatgcgttg agtgatgttc cttaatttat
    20221 gagggttata agggaataac attatgaaca aaaacaatct tccaaccatt ttaagggatt
    20281 gttttcaata tattcaataa tttggaagta cgatgtttca ttacgaataa tgtgttcata
    20341 ataattcctt tgccaaattt cagaaatatc ggtattttga cgaacccatt tagttacgcc
    20401 aattttaaaa ccacgcacaa tagagccgat tgttcgtgat gttccccgta agggcgaaac
    20461 atttttcgcc cttatacatg gggcaaatga tgatttgccc ctacagtttc gacgatttca
    20521 ataatgccat gtaaatgatt aggcataatc acaaagctat gcaagcttac atttggaaaa
    20581 tgatcgggta tatcttccca acattgacgt acaatattcc ctatcttatt aagcctcatt
    20641 tcatcatcaa caatctcacc gagaaaatgg tgtttatttt tacaacaaat agtaatgaaa
    20701 tagaatcctt gtgatcggta atcataatgc tttagacgaa ttgaacgcct cctatgaatc
    20761 tccggctgat atttctgcat ttttcttatt ccttaataaa actgcttata ccaaggggaa
    20821 aatgcccccc ttgcctgctc aatttcaata gaacttgggt aaaattttac tcttatcatt
    20881 cccgtttcta cggtatttaa tacattaata tgtcttctgt ttaatctctc aataatctgt
    20941 ttattcggta atttccatgg gttccatctt ccagcagaaa tcactgcaaa tgctggctgg
    21001 gtaatcgata ataaagtttc gccagtgctg cttttgctac cgtgatgtcc aacctgtaga
    21061 aaatcaattt tgccgagctg atgggcaaat tggcgttctt gttccacgcc agaatcccct
    21121 gtcagtaata tcttcaagcg gtcgtttttg gctaaaataa cgcaagagtc ttggttttta
    21181 gctcgttctg caatgtgtga cgggtaaatt gccaataatt gccattcgcc aaattgccac
    21241 gatgttccgg caatacaagg ctcgggattt atattgtgat acgtcacctt gcttgaacta
    21301 attaaccttg cttttgggta tgcttgcaat aactccacta ccccacctga atgatcatta
    21361 tcatcgtgac ttagaaaaat cgcctctacc tcaatgccat ttcgctttaa atacggcaag
    21421 atttccattt ttgccattga attgcgacta ccatcatttg cttgccaact ggagccggta
    21481 tcgtaaatta ccgctttatt ttgttgataa atgaacgcca ttgccagccc ttgcccaaca
    21541 tcaaacataa tccattctgt ttgggtttga ttaaagagct tagggagata aaaactcaga
    21601 ttgaacaata gggataccgc tactgcactt aaccactttt tataagatag ccgatataat
    21661 ttgcaataca gcaatactaa aaccaataaa ttcagtgaaa gtaactgcca ctgttgccaa
    21721 tggcttaatg caaaccacgc attagaaaat ggatctaaca gccataggct aaattgagca
    21781 agatagtccg ccaacagcca cgttgaaaac agattgtcgg tcaagagcgt aaataaaata
    21841 agcggtacaa gcaaaaagct atacaacggc acaataatca ggttggcaag cagtgcaaaa
    21901 gcagagatgc cctcaaaaaa gtagagttga accggtgaga aaatcagcca aatgccgatt
    21961 tgtaagtgca aaagcgataa ccacaagcgg ttaaattttg tgattttttt acgatattca
    22021 tcgtttaaaa atcggctaag aggaaaatat tgataccata aaattaaact tgctaccgct
    22081 aaaattgaga gccaaaaact atcagaaagc aggctcaatg ggtcaattaa aatcagtaac
    22141 gccactattc tcccccaata ttgccaaggg gtatagtgtc gccgcagaac ttggcaaagc
    22201 aagacaaacg caatcgccag caacgctctg gcggtcggca cggcaaaacc ggctaaatag
    22261 ctgtaaccaa atgcggtgat gaagctaact attcttgcaa aataaagtga aaatccgacc
    22321 gcttgtaatg cggtaagctc gcttttcaag caaagccatt gcacgccttt ggcaaagtaa
    22381 acaccaaaca acattgccag cccgatatgc aagcctgaaa tggcaattag atgggcagta
    22441 gcggtttgtt ggaattgccc ccagtgttct gttttcagcc acgccctttc accaaaagcc
    22501 agagccaata aaaagccttg cgtaggcaaa gcgtccgttt cagctttcac tttattcagc
    22561 caatttgttc gcaagctata atcagttttg gctaatgttt ccaccttgcg aaccgttgct
    22621 gtcatattga tatgattggc aaaataccaa cgctgtcggt caaaattacc gatattgcta
    22681 cgagctgaaa taggacgaag agccagttcg gcttgataga attgattaag taacaacggc
    22741 tgtttcgatt gccagttcaa gtagatcttc tcgcctgtat ttagtgtcgc aatcgctgtt
    22801 tgataatcgg tttgttttaa gattttactg atttcaaatt gaacaggcgt tttactagca
    22861 gtcgtttttt ccgcattttt tgcaacttga atgatctgaa tatagccaat acaaaccaat
    22921 aagccgagta cagccgttaa ttttgagcgt agataaacac tcaatatcag cactaaggtt
    22981 cctattacta tacccacaaa tagaaacgct ttaggcaacc ataaaatagg cagatgaaat
    23041 agaatcaggg caatacaaaa acggtctaaa gtcataattc ggcttacttt ttaaagctga
    23101 gtatgccgtt tgtgcttaat attttcagaa taaattttca gattttcgac acagttcgca
    23161 aaaatacttg aaaaaataaa ggcagacttt ttagcctgcc ttataaagaa gagatattat
    23221 gctgattttt gatcttcagc gtaacttact gctgcagtga ataatacgtc tgttgatgaa
    23281 tttaatgcgg tttcaaccga gtcttgaatc acaccaatca caaaacccac cccaattact
    23341 tgagcagcaa tatcgtttgg aatattaaat aaactacagg ctaatggaat caataataat
    23401 gaaccgcctg ccacacctga tgcgccacaa gcacagattg atgcaactac gcttaatagt
    23461 agtgctgttg cgaaatcagg ttgaatacct tgtgtataag ctgccgctag ggttaatacg
    23521 gttacagtaa tcgctgcacc tgccatatta atacttgcac ctaatggaat agctacagaa
    23581 gcgatctcat cacgaacgcc caaacgcttg gctaaattca tattcaccgg aatgttggct
    23641 gctgaactgc gggtaaagaa tgccgttaca ccactctctc gtaaacaggt aaatgtaagt
    23701 gggtatgggt tgcggcgaat tttccaatac actaataatg gatttagtac taatgccaca
    23761 aataacattg cgccaactaa gactactaat aaacgtgcgt aatcttcaaa cgcatcaata
    23821 ccattgatgg caacagtttc agctactaaa ccaaataccc caataggcgc aaatgcaatc
    23881 acaactttca caacaaacga aactgcgtta gctaaatcat ttaagaatgc ttttgaactt
    23941 gccgaaccat ggcggaatgc aatccctaaa ccgatagacc acgcaagaat accgataaag
    24001 tttgcattac ttaatgcgac taatggatta tcaactaagt taaaaataac ggtttttaga
    24061 atttcaccaa tgccttgtgg cggggttaaa ccgtctgggc ttgcagtaag ctctaatgta
    24121 gttgggaaca taaagcttaa aacaacagcc gttaatgccg caaaaaatgt acctaataca
    24181 taaagcacca gaatcggctt taatttgcta tctgaaccaa cttctttatt tgcaatcgca
    24241 gccaaaacta atacaaatac taaaataggc gcaatggcac gtagtgattt cacaaaaaat
    24301 tgacctaata caccaacgct ggtagcccat tctttattaa taaatgccag caatacccct
    24361 agcactaaac caatggcgat acgtaatact aaattaccgc caagaatttt tgatgataat
    24421 gattgactca taacccttca cttctgtaag acaacaaaaa ataaggataa ataaaattta
    24481 tccgcctgaa aaaataggtt tataagatta gcggaaaata aacaaatatg gaataaacaa
    24541 gcggtttatt tttcagattt ttttacaaaa aagtgaagtt ttttacattc catggctatc
    24601 atattatttt ttccttaggt tctttgaaca tcaccattct ttcagtacaa tagttctcta
    24661 aactctttta tttattttat ttactatgaa accaaccaat aaagcagatt ttcaacgtgt
    24721 gatcaatgca gctggctact ctatgaaggg gttaaaagcc gcttatatta atgaagccgc
    24781 ctttcgccaa gaaatttggt gcgctactat tttattccct ctagggctta ttctaggcga
    24841 aaccaatatt gaaaaagcat tattagtagg cacagtttta cttgttttag ttacagaact
    24901 actcaatagt gcggttgaat ctgttgttga ccgcattggg gctgatttcc acgagctttc
    24961 tggtagagct aaagatattg gctctgcagc tgtatttatg gcgatggttt tactcgctat
    25021 aacttggata ttaattttgt tttgttaact ctatttttca accaacactc ttactgaggt
    25081 atttatgcgc ttaaaaaaaa cattactttc ggtagcacta cttagtgcaa catcagcaat
    25141 ggcctacgag acaggtaaaa catatcgttt tacggtttta catactaacg atatacacgg
    25201 tcacttttgg caaagtgata aaggcgaata cggtctcgct gctcaaaaaa cattggttga
    25261 taatattcgc aaagaggtcg cagaaaaagg tggttcggta ttaatgctga atgcaggtga
    25321 tgcgaataca ggcgtgccgg agtcagatat gcaaaatgca cgtcctgata ttgaaggaat
    25381 gaatgcgatt ggttacgatg caatggttct aggtaatcac gaatttgatt acccactgca
    25441 aattctctct atgcaagaaa aatgggctaa attccccttt atttcggcca atgtcattaa
    25501 taaaaaaacg gataaaccca ttgtaaaacc ttacgtgatg ttagaacgag gcggactaaa
    25561 aattgctgtt atcggattaa caaccgaaga taccgcaaaa ttaggtaatc cagatgtaac
    25621 ggaaaatgcc tttttcaaaa accctattga aacagcaaaa aacacattag ctgaaattaa
    25681 tcaaaaagaa aaacccgacg tacgtatcgc tttaacccat atgggttact attttgacgg
    25741 taaacatggt actaatgcac caggtgatgt aacaatggcc cgtaccttag aaaaaggagc
    25801 gttcgattta atcattggcg gtcataccca cgatactgtt tgtattgatg aaaaaggtca
    25861 attcaaagcc aaatatacgc cgggtgagga atgtaaacca gacttccaaa acggtacttg
    25921 gattgtgcaa gccggcgaat ggggcaaatt tgttggacgg gctgattttg agtttaaaga
    25981 tggaaaagct accttggtaa aatatgaatt aattccggtc aacttaaaaa aaaccattaa
    26041 aaaagaagac ggtactaaag aataccgact ttaccagcct gaaatcaaag ccgatgaagc
    26101 aacctatacc ttattgaaaa aatatcaaga tgagggcgat aaaaagctta atattgaagt
    26161 tggtcgtgtg aaagggttat tagacggcaa acgtgagcat attcgcttcc aacaaaccaa
    26221 tctcggtcgt ttaattgcac aatcgcaaat ggaaagggta aaagccgata tcgggattat
    26281 gaactccggc ggtattcgta cctcccttga agaaggtgta ataacttata aacatattct
    26341 gactgttcaa cctttcggta atatgattgc aacggtggat ttaaaaggac aagaattgtt
    26401 agataccctc accactattg ctctgaaaga agttgatact ggcgcttatc ctcaatttgc
    26461 cggcatttca atggtagtcg accgtacagc aaaaactatt tctgatgtta aaatcggtgg
    26521 caaacctttt gataaagaga aaacttataa agtttctctg cctgactatg ttgcggctgg
    26581 tggcgatggc tacccattac tgaaaaaaca ccctagctat gtcaatacag gctttattga
    26641 tgccgaaatg ctgaaaaaat tcttcgaaga aaataaaatt attgaggcag ataaatacga
    26701 tccaaaaaac cagatcattt tcaaatagag ctatagaaaa tgaaactcac tctggcagtc
    26761 tctgctcaaa agagctgtgg ctgcctgtag attgttttct tactttcaag tgttatagga
    26821 aatcgataaa aaatccctac caaattaatt catcaccata tgatgaaaat taaaaaacct
    26881 ctggcaatac tttgccaaaa gtctttgact tttatagggt aatatcactg cttattagcc
    26941 tttaacacgt tgttccaaaa tcacattcag tgttttttgt ttctgtttca acgcattttc
    27001 gggttcggct ttaactagta aggtataaat taaatcaaga acgaaaagtt gtgacatttt
    27061 agtaccgata gaatctcctt gcatatgccc ctgtcgatta ccattaatta acacataatt
    27121 agcctcttcc gtgacggggg aacgtaaatt gtgtgtaatc gcaaccgttg tcgctttatt
    27181 tgcacgagaa aaacgtagtg atttcacaat ttcttcagaa tagcctgaat gactaatccc
    27241 tataactaaa tccccctctt tcaccaatgc cgcctgcata tacataaaat gattatttgt
    27301 gactgcatcg gtttgtagcc caatacgcat taatttatgt tttgcatctt ctgcggttaa
    27361 cccagaagaa cccactccaa ataaaaagat ccgttttgcc ttacgtaatt cttcaacaac
    27421 tttttccaac acgttaaagt caagcaaatt aatagtctct tcaataacgt tatctaaact
    27481 cactttgagc ttctcagcaa tatctttcga tgtatccgat tctgaaacat ccgtatcaag
    27541 caatactcta ttatcttgat tttgcgtagc caactctatt gcaagctcta atttaaagtc
    27601 ggtataacct ttaaaaccta atgtacgaca aaaacgaata aaagttgctt caccaacatc
    27661 taattgtttg gccacttcag ataatgaaca ttggctaagt aattccggct gagataaaat
    27721 agcagcagct attttcttct ctgttttggt taaactattt tgtagcgagc taattgtatt
    27781 aagaattttt ccccgactag acatagtagc ctcctaaatc aattcaacag gtactttcac
    27841 caccagtttt ttcaatgttt tgttgccatt caccgaattt ccaggcttat gtggttcata
    27901 agggaggaaa atagcgaaca tatttggctt gaggatcaag ttatttttat catcaatctc
    27961 agctgttaat tggtagtcat cttcatctcg atattcatca tacttagata aatctggctg
    28021 gcttaacccg tattcaatca tttcttcgcc gtctatcaat aattgaatat cgataaattt
    28081 tcggtgtaac tctgcttttt tcccctcagc tggcgtagtt tcaaatgaca ttacattcat
    28141 gcgaatacca ttttctaatt cttgccagcc taattccaaa ttaactaaat ctaaactttt
    28201 taatttttta caaaggcgag cgaatactgg tggaagagat tttaaataat catctcttga
    28261 taaa
//
LOCUS       DANLVT010000021        27819 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.021, whole genome shotgun sequence.
ACCESSION   DANLVT010000021 DANLVT010000000
VERSION     DANLVT010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 27819)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27819)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27819
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.021"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            109..2676
                     /gene="clpB"
                     /locus_tag="PXC99_000778"
     CDS             109..2676
                     /gene="clpB"
                     /locus_tag="PXC99_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HDL5417254.1"
                     /translation="MNFEKMTTKLQEALAESQSLAVGKDNPYIEPAHLLYALLKQEGG
                     SIASLFTTLNVDVPTLIRELQQILDRLPKVQGGNTQVSQQLVRLLNQSDKLAQQFGDS
                     FISSELFVLAALDDNGDLGKLFKQFGLNKEKLTQAISQIRGGDTVNNQNAEDTRQALK
                     KYTIDLTERAKAGKLDPVIGRDEEIRRAVQVLQRRTKNNPVLIGEPGVGKTAIVEGLA
                     QRIVNGEVPEGLKNKRVLSLDMGALIAGAKYRGEFEERLKAVLNDLAKEEGQVILFID
                     EIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYRQYIEKDAALERRFQKV
                     LVDEPTVEDTIAILRGLKERYEIHHHVQITDPAIVAAATLSHRYVSDRQLPDKAIDLI
                     DEAASSLRMEIDSKPEPLDKLERRIIQLKLERQALQKEEDEASRQRLAKLDEEMAAKE
                     REYSELEEIWKAEKSALLGTQHIKSELENARIAMDQARRENDFEKMSELQYGVIPNLE
                     KQLQAVENGEKNADAQLLRTKVTEEEIAEVLSKATGIPVAKMMEGEKEKLLRMEEVLH
                     ARVIGQNEAVDAVANAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELSKTLANFLFDD
                     PDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRHPYSVVLLDEVEKAH
                     PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSHLIRENAYKGYDVVKEMVM
                     EVVGQHFRPEFINRIDETVMFHSLGQEHIRSIAKIQLQRLIQRLAERGYEVTVTDAAL
                     DHIGKAGFDPLFGARPLKRAIQQELENPLAQQILSGKLLPNKAVTVDYQNGQIVATQ"
     gene            2890..4032
                     /locus_tag="PXC99_000779"
     CDS             2890..4032
                     /locus_tag="PXC99_000779"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HDL5417255.1"
                     /translation="MSQLFPEATIRTQAPYRNDIVGSFLRTDALKKAREDFNQQKITR
                     DELREVTRQEVKKLVELQKQHGVKAVSDGEFSRTWWHLDFLAELDGMDWQETEVFNVN
                     FTGHKPKGQTVKIVGDIDFSESHPFVDAYRLLKEAAGDYPTKFTIPAPTMLHIICCVR
                     AEDYQPLPQYQDEQKLYDDIANAYIKAMHKFYDMGLRNLQLDDTSWGQFCAEDKRKEF
                     AARGFNLTDLAEKYVALLNRIVDAKPADMSITMHICRGNFRSSWFSEGGYGPVAEVLF
                     GKCRVDGFFLEYDTERAGTFEPLRHIKDQQVVLGLITSKFGDLEDKNVIIERIKEAAQ
                     IVPINQLCLSPQCGFASTEEGNILTEAAQWAKLNLIKEIAEEVWGS"
     gene            complement(4089..5480)
                     /locus_tag="PXC99_000780"
     CDS             complement(4089..5480)
                     /locus_tag="PXC99_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HDL5417256.1"
                     /translation="MENTPLIEPSKNTRNSLIFVADAILFIILLNTLPFTPEANKGLA
                     LLIFIAVLWLTEALHVTVTALLIPILAVALGLVKSKEALVAFADPTIFLFFGGFALAT
                     ALHIQQLDRMIANKIMALAKGKLSIAVIYLFAVTAFLSMWMSNTATAAMMLPLAMGIL
                     SKLDQKQNHNTYLFVLLGIAYSASIGGMGTLVGSPPNAIVASQLNLTFADWLKYGLPI
                     MLILFPLMIATLYIVFKPNFSVSFDRSFEKIELNRSRIITLAIFVFIALGWIFGDKIN
                     PIISAFLGINGKIASFDTILALIAAALICITRVANWQQIQENTEWGVLFLFGGGLTLS
                     AVLGQTGASKIMADGVVSLIEGGHFYLIGLIVAAFIIFLTEVTSNTASAALLVPIFIS
                     IAQALNMPPVGLALIIGLGASCAFMLPVATPPNAIVFGTGQIKQSEMIKVGFWLNIIS
                     IFVIATVGYLFWL"
     gene            complement(5640..6539)
                     /gene="cdd"
                     /locus_tag="PXC99_000781"
     CDS             complement(5640..6539)
                     /gene="cdd"
                     /locus_tag="PXC99_000781"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HDL5417257.1"
                     /translation="MFRTDITERFEQLKAAKNCEVTQAIIEQLIKQDFHGQLSYEVVD
                     ELCEKFKRSRVELALYCIAIAACYAVTPVSDFNVGAVAIGKNGDFYFGANQEFSGECM
                     QQSVHAEQSAISHAFLAGETLITDVVVNYTPCGHCRQFMNELNSAASLKVHLPHSQNN
                     LLHSYLPDSFGPKDLGIEKVLFDEQPQQFEVKGDHLQQAAIFAANNAYAPYSNAFSGV
                     ALQVGERIVCGKYTENAAFNPTFLPLQSALNYRLFLGLADIPVTRVVLAEAKGSLSSY
                     AMTQALAKSLFGLEIEYLSLQAV"
     gene            complement(6553..7455)
                     /locus_tag="PXC99_000782"
     CDS             complement(6553..7455)
                     /locus_tag="PXC99_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5417258.1"
                     /translation="MISSSLKLGYFSLIVATLFWGGNFVLGKVLSGAVQPITLTYLRW
                     LPAFLILVLLFFRPTWRVMHLLKPRLGVMWVLGLLGVILFPATLYEGLKTTTALNASL
                     YLAISPVLVLFLNRLVFKEKISPIILSGAIISLLGVLWLLMQGKLTRLFSLAINQGDL
                     WAIASTISWAVYCCVIRLRPQGISNTVFLTVLVGLAVLTLTPFFIYEYVAESAKNLAN
                     LTALQWSGIGYLVIGPSILSYAFWNFGIAIVGSAKGAVMTNFTPLFAAMFSIILLNES
                     VHTYHIISAILITAGILICSYKKH"
     gene            complement(7452..7808)
                     /gene="folB"
                     /locus_tag="PXC99_000783"
     CDS             complement(7452..7808)
                     /gene="folB"
                     /locus_tag="PXC99_000783"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HDL5417259.1"
                     /translation="MSDKVFIRELTAFASIGAYNWEHTIKQRLVFNIDMAWDFSKAAE
                     TDDVQYCLNYAEVSQKVLDFVESQPFKLVETVAYQLAELLQKEYQLSWIRIELHKPKA
                     VAQASSVGVIVERGHQ"
     gene            7878..8483
                     /gene="plsY"
                     /locus_tag="PXC99_000784"
     CDS             7878..8483
                     /gene="plsY"
                     /locus_tag="PXC99_000784"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HDL5417260.1"
                     /translation="MNLIPYLLILTAYLLGSISSAVIFCKLAGLPDPREVGSHNAGAT
                     NVLRIGGKSAALGVLLFDILKGTLPVAMGIYFELSPSQLGFIALAVCLGHIFPIFFQF
                     RGGKGVATAFGAISALSFIVAGGAIGTWLLVFLISGYSSLSAVFTALVVPFYIWWFEP
                     QFTFPVALVCCLLVYRHHDNIQRLWRGQEDKLWDKFKKNRA"
     gene            complement(8557..10464)
                     /gene="parE"
                     /locus_tag="PXC99_000785"
     CDS             complement(8557..10464)
                     /gene="parE"
                     /locus_tag="PXC99_000785"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HDL5417261.1"
                     /translation="MSEKRYGADEITVLKDLEPVQLRPGMYTDTTRPNHLGQEVIDNS
                     VDEALSGFADKIDVILHADNSLEVVDNGRGMPVDIHSTEKISGVELILTKLHAGGKFS
                     NKNYTFSGGLHGVGISVVNALSERVEIQIKRGGEVYSIAFANGVKVEDLTVIGTCPKK
                     QTGTTVRFYPNPKYFDSPRFSVSRLRHLLRAKAVLCPKLTINFIDKINNTEESWYYED
                     GLSDYLSEALNGYETVPNPPFIGDVTAETEAVSWALTWLPEGGELVAESYVNLIPTAQ
                     GGTHVNGLRNGLLKAMVEFCEIHNLLPKGVKLTADDVWNRCAYVLSLKIQEPQFAGQT
                     KERLSSRQASSYVDSTLKDAFSLWLNQNVQTGKLIAEMAISSAQSRMRAAKKVVRKKL
                     VSGPALPGKLADCTAQDLSRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWE
                     VSSDQVLASQEVHDIAVALGIDPDSDNLEELRYGKVCILADADSDGLHIATLLCALFL
                     RHFPKLVQNGHVYVAMPPLYRIDIGKDEVHYALDEAEKEAILARLAKKKGKPNVQRFK
                     GLGEMNPSQLRETTMEPSTRRLVQLTFDDTVEEGELNTFEIMDMLLGKKRAEDRKQWL
                     QNRGDEADLAV"
     gene            10672..10896
                     /locus_tag="PXC99_000786"
     CDS             10672..10896
                     /locus_tag="PXC99_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HDL5417262.1"
                     /translation="MVVKILKRKSQKTLQQIYTQPISANIKWTNIEALFLELGAEIEE
                     REGSRIAVVLFQQVRVFHRPHPNPDTDKGR"
     gene            10939..11268
                     /locus_tag="PXC99_000787"
     CDS             10939..11268
                     /locus_tag="PXC99_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HDL5417263.1"
                     /translation="MRNIMDINGYKAVIAYDPETELFRGEFIGLNGGADFYADNVIQL
                     KKEGELSLNIFLELCREKGIEPFKQYSGKFNVRLSPELHKAAVIAATAENLSLNEWIN
                     QTLEKSV"
     gene            complement(11307..11693)
                     /gene="cueR"
                     /locus_tag="PXC99_000788"
     CDS             complement(11307..11693)
                     /gene="cueR"
                     /locus_tag="PXC99_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cu(I)-responsive transcriptional regulator"
                     /protein_id="HDL5417264.1"
                     /translation="MNISQAAEKTGLSAKQIRDYEKAGLLPPTSRTEAGYRFYNATDL
                     SRLHFISNARKVGFSLAQISELLKLNDNPNRSSRDVKQLTEQHIGELEQKIADLNQML
                     TLLKSWSSSCCGNANSECSILNGLNG"
     gene            11782..11982
                     /locus_tag="PXC99_000789"
     CDS             11782..11982
                     /locus_tag="PXC99_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HDL5417265.1"
                     /translation="MTITLQLDGLHCGNCVKSVEKALNGVAGVNQVSVTLEPQIAVVE
                     GSAEAQALIEAVEDIGFDAKLA"
     gene            12035..14227
                     /locus_tag="PXC99_000790"
     CDS             12035..14227
                     /locus_tag="PXC99_000790"
                     /EC_number="3.6.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HDL5417266.1"
                     /translation="MTSTAHYSPEQQLLIDGMHCAACVRRVEKALLKVEKVEFASVNL
                     ADQTAFVQGNANPEALVAAVVKIGFGAEVLESEEERRIKQQAQTQRVLGHKRTQFMLA
                     LVVGFALVAFGFYKGMTVNETNRSLWLSWAGISLATMYFSGKDFFLGAFSALKNRSAN
                     MDMLVAISTGTAWLYSCWLTLFPQPNAHVYFEASVMILGFINLGKYLELKAKQRSSLA
                     LEKLLDLAPKQAVIFEENIAKTIPAKAIKPQMRVQALTGDRLAVDGILDSGSIWVDES
                     MLTGEALPVEKKIGDKVRAGTLVQDGSGTYIAEQVGSQTALARVINAVRHAQSSKPPL
                     AQFVDKIAAVFVPVVVSIALLSALIWLAVGQDFAFALSIFTTVLIIACPCALGLAIPL
                     STIAGVARSAEFGVLVRNIEALQASSEIDTLVFDKTGTLTTGRMEVSDVLTFNGFEQK
                     RLLQLAKSVEQHASHPIAKAIAKFAENQTACGVTDVQVLKGLGISAKYEGSTIRMGNW
                     QFVGETIQANLASLLPAKEGDFSSKIFVSVDNQLAGVLSVSDQLRPEAKATIHQFQAE
                     GYQCVMLTGDRQQTADYFANALGLDGVIAEVLPEQKAEKIRALQAEGKKVAMIGDGIN
                     DAPALAQANVGIAMHNGSDIAVETADLSLMREGLAPLMQILPFSKKVLKNMKQSLLGA
                     FIYNVIAIPIAAGVLYPFTGWLLNPMIAAIAMTLSSITVVLNSQRLLK"
     gene            complement(14280..15065)
                     /gene="truA"
                     /locus_tag="PXC99_000791"
     CDS             complement(14280..15065)
                     /gene="truA"
                     /locus_tag="PXC99_000791"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HDL5417267.1"
                     /translation="MKIALGIEYDGSRYFGWQRQEAVESVQQQLEQALSVVANSPVEV
                     FCAGRTDAGVHGTGQVVHFETQANRPLQSWCFGTNAHLPDDIAVKWAVAVNEDFHARF
                     SATARRYRYIIFNQKLRSAILPKGVTHFHFPLDERKMHQAGQYLLGENDFSSFRAAKC
                     QSNTPWRNIHHLNVSRQGNYVIVDIQANAFVHHMVRNIVGTLLEIGQGRQPVEWAKWV
                     LEQRDREKAAPTAKAEGLYLVEVHYPEHFGIPKTPLGPLFLAD"
     gene            complement(15130..15819)
                     /gene="folE"
                     /locus_tag="PXC99_000792"
     CDS             complement(15130..15819)
                     /gene="folE"
                     /locus_tag="PXC99_000792"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HDL5417268.1"
                     /translation="MTTISPELTITENTLSPEAQKVRQALLAKGIETPTVTHTKDKAS
                     RRAEIQQHMQAVLELLGLDLSDDSLEETPHRLAKMYVDEIFSGLDYATFPKITNIENR
                     MKVSEMVLVDDITLTSTCEHHFVTIDGKVAVAYYPKKWVIGLSKINRVVQFFAQRPQV
                     QERFTEQILTAFQTILETDDVAVYVKATHFCVKCRGIKDTNSYTVTSAFGGVFLEDRE
                     TRKEFLGLLNK"
     gene            15920..16627
                     /locus_tag="PXC99_000793"
     CDS             15920..16627
                     /locus_tag="PXC99_000793"
                     /EC_number="2.7.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid kinase"
                     /protein_id="HDL5417269.1"
                     /translation="MQNIQYLFNADLIPEHQAEFVQSLLTCKNFDNSDRLLGFSKGRG
                     TTWFLDTSAELGINVVLRHYYRGGLFGKIIKDSYFFTRFEATRAYKEFFLLQQMLAWG
                     LPVPRPVAIKIERHFCCYRADIMLEKLENTQDLSKILQSHSLSNEQYEQIGKLIRSLH
                     NHQIHHSDLNIHNILLGNDGKFCLIDFDKCGIEPGENWKQNNLDRLLRSFKKEQGRLN
                     IFFSEENWQAVLRGYTL"
     gene            complement(16682..17779)
                     /gene="apbC"
                     /locus_tag="PXC99_000794"
     CDS             complement(16682..17779)
                     /gene="apbC"
                     /locus_tag="PXC99_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HDL5417270.1"
                     /translation="MNQLNEQQLVEIKAILQQFSHPTLQKDLIALNAFKKAELGGDIL
                     RIEITMPFAWNSGFETLKAETEAKLKQVTGSSGVKWVLNYQIATLKRANKHPAVNGVK
                     NIIAVTSGKGGVGKSTTSVNLALALRAQGTRVGILDADIYGPSIPHMLGAKDQRPTSP
                     DNKHITPITAHGLQSNSIGYLMEEDNATIWRGPMASSALSQLLNETWWNELDYLVIDM
                     PPGTGDIQLTLSQQIPVTGAVVVTTPQDIALLDAIKGISMFEKVSVPVLGVIENMSMH
                     ICSNCGHHEAIFGTGGAEKIAQKYGTKVLAQLPLHIRLREDLDSGVPTVVAAPEHEIS
                     QAYLALAEKVASELYWQGSVIPSEIMIREVK"
     gene            complement(17776..19323)
                     /locus_tag="PXC99_000795"
     CDS             complement(17776..19323)
                     /locus_tag="PXC99_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5417271.1"
                     /translation="MLKSLQAVTFVKKIAKVTACILLITSCDQLICPQSIQSVWVENR
                     QSDTLLKRAIYSAVFQLDPHKIKASADAAPLRDLLVGLTAYNRKGDVVPAIAQNWFTE
                     DEKEWLFILDEKAVWSNGQPVTAQDFVASWRRLIDPQNHSVLSKYLIYMGIENAKAIE
                     EQIKSVEELGVEALNAHTLRIRLNHPNHQLPEMLAHSALLPTYQGIAPTIDNFVSNAS
                     YRLEKLDAQKMVLKARTQEIPFQTIEYDLITTIQNCSAFDIVENPLLNKKTNIVKFPR
                     LCSYYYEFNFDDPLLAKREIREAIRTMVASANSGQEYGVPSQSVIPHSLVKDREKRWN
                     PVVVEQLLTKAGISPYNPLKLTLLYDENSINIANQVTRALSQSELFNITPKMVDWQTL
                     NKVREQKDYQIARAGWCADYPDPIVFLQKFHSMSPDNHSGYKSEIVDQKLNRLQTETL
                     SAEARESLIQEISEQLYSDVAVLPLFQYHHRVGIVSSLLGIDLNNDSEVIYSKDLKRN
                     LANKDNQ"
     gene            complement(19349..19999)
                     /locus_tag="PXC99_000796"
     CDS             complement(19349..19999)
                     /locus_tag="PXC99_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchE family NAAT transporter"
                     /protein_id="HDL5417272.1"
                     /translation="MDIIINFAIYLQFFIGLFAIVNPFGSLPIFFSMTAHQYEGERNR
                     TSLITAVSIGVILLVSLYFGNLILNAFSISLSSFRVAGGILIVSIAMTMISGKLGEHK
                     QNKEEKNEDITEYENIGVVPLAMPIMAGPGAIGSTIVWGTRYHTWEDYVGFSIAIIVF
                     ALICYILFRYSAPLVKKLGKTGSNVVTRIMGLILMALGIEIIVAGITTLFPVLLVK"
     gene            complement(20121..21992)
                     /locus_tag="PXC99_000797"
     CDS             complement(20121..21992)
                     /locus_tag="PXC99_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HDL5417273.1"
                     /translation="MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGLISQDNSVAKV
                     NGEEISQQLFNNTLNREQNRLNAELGSRFWDLMDSPEYAAQFNQSVLNGLIDEELLRQ
                     YAKELKLGISADQIKSEIVNSQMFQQDGKFSNELYQQTLRHNNLSADGYAAIVQEGML
                     QSQLQEGIINSDFNVPAQQALLAKLLLQQREVRLAEFSVAKEMENQTASEQELRAYYE
                     ANKTKLLAPEKLAVEYVTLSPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQ
                     VASEAEAQAIEQALKNGEDFATLAKNKSSDTLSANNGGDLGWAKAGTFPKAFEDAVAN
                     LTAGQMSAAVKVDNAYHIIKVLERKPEQVIELAQVKDKIAQTIRQELVLTEYFTVARE
                     MANKAFENNSSLEEVAKAGNVELQKTDLFTRENVPTALQNEKVLKVLFEGELRQNKQN
                     SDALDVGNDANPQTLFVRVSDYDAERPQTFDEAKAAVENFVKAEKAEKALLAKVEENV
                     KALNEGKSVDVKFNAPQTLVYMQAEVENPVLAGTIFAMKKAQDKTTYQMARNQKGDVV
                     IVALDNITEGNAEQFKTLAPQFEQANRLILRNEFLQSLRAKASIEVNEDFMQQRSSH"
     gene            22174..22443
                     /gene="rpsO"
                     /locus_tag="PXC99_000798"
     CDS             22174..22443
                     /gene="rpsO"
                     /locus_tag="PXC99_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004933502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HDL5417274.1"
                     /translation="MSLSVEAKAKIVAEFGRDAKDTGSSEVQIALLTAQINHLQAHFA
                     EHKKDHHGRRGLLRMVSRRRKLLDYLKRTDLAKYSETIARLGLRR"
     gene            22515..23384
                     /locus_tag="PXC99_000799"
     CDS             22515..23384
                     /locus_tag="PXC99_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 domain-containing protein"
                     /protein_id="HDL5417275.1"
                     /translation="MAFASLFTLLDDIAAVLDDVSIMTKVAAKKTAGVIGDDLALNAN
                     QVSGKNVVPERELPIVWAVAKGSLINKVILIPLALLLSVFLPQAIIPLLMIGGAYLCF
                     EGVEKLLHRLLHKNNQAHSDETETLSEKDKIKGAIRTDFILSAEIIIIALGVLQDSST
                     LTQILSLSAIGVGITLFVYGLVGLIVKLDDIGLWLMQKKSTFSQAVGKGLLFAMPWFM
                     KGLSVIGTIAMFLVGGGIFTHNLPMIHHFVEQFGISPHFSTLVDFAVGIVVGIIACLI
                     ILPLMKLFSKKAH"
     gene            complement(23474..24739)
                     /locus_tag="PXC99_000800"
     CDS             complement(23474..24739)
                     /locus_tag="PXC99_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme biosynthesis protein HemY"
                     /protein_id="HDL5417276.1"
                     /translation="MFRTLFLMLLLLVGLISGPYLAGNQGYVRIETATTVIEMSIVML
                     VVFFVLAMAVVYLLEWIVTKICRMSNGAYNWFSTRKHKKAQQETLEGLMRMSEGNYSK
                     AEKLFSKNAKHADEPVLNLIKAAEAAQQNGDDLAANKYLIKATEIAGPNNVAVELVRT
                     RILLQQGKLPAARTAIDSLLELAPHSDEVLRLAIQIYKESRAYVALDRLLVEIGQRNF
                     LTAEEYAELEYFVDDGLQDERLQEEGQEGLLSWWENQPNRRRKSVYSRVGVIKRLIDS
                     DDHQSAQEIALETLKKFEDEQLQGLFVQLTRLQIDSDSKLLKVLAKRADKANVKYTDD
                     YARALGYIYTRDGQYQKAKSQFELLLAHDECVADDRIMALHVAEQMGDTLMANRIREE
                     NLKQVNMATQSKVNEPLALPQTATESNSL"
     gene            complement(24758..26068)
                     /locus_tag="PXC99_000801"
     CDS             complement(24758..26068)
                     /locus_tag="PXC99_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HDL5417277.1"
                     /translation="MSRSKKVTEHLEHSAEKVVEEAQQAVDSAGSFAKKEIEEDVVNE
                     AIEKDIQTEMQKAPKEQVVVQKSGGKGLALVALLVALAVGGAGHYMANKKFAEVESQI
                     QAVSAKANQPTTQTMVEMPNFENEKAQIAELVTEYQKALERIKALETAQNGYTQQISS
                     LQLQLQKLNNTSGSDNTFWLLSEADFLLNNAARKVVLDNDIETAKNLLLEADQVLSKA
                     PNTIHIREAIKTDLNTLTALHQIDQNALMQRVANLANKLDDLPILESEQASNSKQDGQ
                     VSDSLADWEKNLEKSAASFLDHFIRVSKRNAADEKAFVAPNQEIYLRENIRLRLQIAI
                     LAVPRQQSELYKKSLQTVGSWVRSYFETSNENVQHFLKELDELAEQTIYVDAPTSLQS
                     LKVIAQQLNKTPEKIEKVEIKAEKELEQAEPVKAEQDAMPLSAQ"
     gene            complement(26080..26844)
                     /locus_tag="PXC99_000802"
     CDS             complement(26080..26844)
                     /locus_tag="PXC99_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HDL5417278.1"
                     /translation="MNVLVTRLDSRGQELVDMLNEQQIFAIHQPLFTIEAGKELPLLP
                     SAISRLKSDDYVFVVSPNAVDYAAKTLVDTGFHFRSDLKYFAVGQRTAKYLTEKAEQA
                     VIYPIEFENSEGVLALPEMQNLTDKTILILRADSGRELLAETAVLRGATIQYLECYRR
                     EPVTDDIPEKISLCKRLGVDTIVITSSEILRSLYEQAKADCRAWLFECDLVVVSRRIA
                     KIAKQMGWQEDKIRVSDKADNVTLMNTLLFKVGKSN"
     gene            complement(26844..27779)
                     /gene="hemC"
                     /locus_tag="PXC99_000803"
     CDS             complement(26844..27779)
                     /gene="hemC"
                     /locus_tag="PXC99_000803"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HDL5417279.1"
                     /translation="MKDILRIATRQSPLALWQANFVKSELEKHFPQLSVELVTMVTKG
                     DIILDTPLAKIGGKGLFVKELELALLENRADIAVHSMKDVPMSFPEGLGLAVICERED
                     PRDAFVSNNYHSLEDLPKGAVVGTSSLRRQCQLMAKYPHLEVKSLRGNVGTRLSKLDN
                     GEYDAIILASAGLIRLGLQERIRSYISVEQSLPAAGQGAVGIETRANDERILNYIAKL
                     NHSSTACCVMAERAMNTRLQGGCQVPIGGYATLEGDELTLNALVGSLDGSQIIRASAK
                     GHKQEAEQLGILVAEQLLAQGADKILAAVYNENVQ"
BASE COUNT         8194 a         6039 c         5357 g         8229 t
ORIGIN      
        1 ctttttcaca tttttacttg aaaattgttt accaagctcc atttagtgtt tcaacaagag
       61 atgtaaataa aaatttacac tttctaaact cattgtaagg agaaagaaat gaattttgaa
      121 aaaatgacca caaaactgca agaagccttg gctgaatcac agtcgcttgc ggtaggaaaa
      181 gataatccgt acatcgaacc ggcacatttg ctctatgcgt tgttaaaaca agaaggtggc
      241 tcgattgctt ctttgtttac cacattaaat gttgatgtac cgactttaat tcgtgaatta
      301 caacaaattt tagaccgctt gccgaaagtt caaggcggta acacccaagt ttcacaacag
      361 ttggtcagac tgttaaatca atcagacaaa ctggcacaac aattcggcga cagctttatt
      421 tcatcagaac tatttgttct agctgcactt gatgacaatg gcgatttggg gaaactattt
      481 aaacaatttg gcttaaacaa ggaaaaacta acacaagcca tcagccaaat tcgaggagga
      541 gacacagtga ataatcaaaa tgcggaagat acccgccaag cactcaaaaa atatacgatt
      601 gatttaaccg aaagagccaa agccggtaaa ttagacccgg ttatcgggcg tgatgaagaa
      661 attcgccgtg cggtgcaagt cttacaacgc cgtaccaaaa acaaccctgt gttaattggt
      721 gaaccgggtg tggggaaaac ggcgattgta gaaggcttgg cacagcgtat tgtaaacggc
      781 gaagtgccgg aaggcttgaa aaataagcgt gtactttcgc tggatatggg agcattaatt
      841 gccggtgcga aatatcgtgg tgaatttgaa gagcgtttaa aagcggtttt aaacgacctg
      901 gcgaaagaag aagggcaagt tatcctcttt attgatgaaa ttcacacgat ggttggagca
      961 ggcaaaacag acggagcaat ggacgccggc aacttattaa aaccaagcct tgcccgtggt
     1021 gaattgcact gtgtgggggc tacaaccctt gatgaatatc gccaatacat tgaaaaagac
     1081 gcagcccttg aacgccgttt ccaaaaagta ttggtggacg aaccaacggt tgaagatacg
     1141 attgcgattt tacgtggttt gaaagagcgt tatgaaatcc atcatcacgt tcaaattaca
     1201 gaccctgcca tcgtggcggc ggcaacgctt tcgcaccgtt atgtgtctga ccgtcaattg
     1261 ccggataaag cgattgactt gattgatgaa gccgcttcaa gcctgcgtat ggagattgat
     1321 tctaaacctg agccgttgga taaattagaa cgccgcatta tccaactcaa attggaacgc
     1381 caagcgttac aaaaagagga agatgaagcg agccgtcagc gtttagccaa attagacgaa
     1441 gaaatggcag cgaaagagcg tgaatattcc gagctggaag aaatctggaa agcggaaaaa
     1501 tccgccttac ttggtacaca gcatattaaa tcggagttgg aaaatgcccg aattgcgatg
     1561 gatcaggctc gccgtgaaaa cgatttcgag aagatgtcgg aattgcaata tggcgtgatt
     1621 ccaaacttgg aaaaacagtt acaagcggtc gaaaatggcg aaaaaaatgc agatgctcag
     1681 ctcctccgta ctaaagtcac cgaagaggaa attgcggaag tgctttcaaa agcaacgggc
     1741 attcctgttg caaaaatgat ggaaggcgag aaggaaaaac tccttcgtat ggaagaagta
     1801 ttacacgctc gggttatcgg gcaaaatgaa gccgttgatg cggtggcaaa tgcgattcgc
     1861 cgtagccgtg ccggactttc cgatccgaat aaaccgattg gttcattcct attcttagga
     1921 ccgaccggcg tgggtaaaac cgagttaagc aaaaccttag ctaatttctt gtttgacgat
     1981 cctgatgcta tggtgcgaat tgatatgtct gaatttatgg aaaaacacag cgtatcccgc
     2041 ttagtgggcg cacctccggg ctatgtcggc tacgaagaag gcggctattt gaccgaagcg
     2101 gttcgccgcc atccatattc ggtagtgtta cttgatgaag tggaaaaagc tcaccctgat
     2161 gtgtttaaca ttttattgca agtgttagat gacgggcgtt taaccgacgg gcaaggcaga
     2221 acagtcgatt tccgcaatac ggtagtgatt atgacctcaa acttaggctc gcatttaatt
     2281 cgagaaaatg cgtataaagg ctatgatgtg gttaaagaaa tggtgatgga agtcgtcgga
     2341 cagcacttcc gccctgaatt tatcaaccgt attgatgaaa cggtgatgtt ccactcactt
     2401 ggtcaagagc atatccgttc gattgcgaag attcagctac aacgcttaat ccaacgcttg
     2461 gcagaacgag gctatgaggt gacagtaacc gatgcagcat tagatcatat cggcaaggct
     2521 ggtttcgatc cgctgttcgg agcaagacca ctgaaacgtg cgattcaaca agagcttgaa
     2581 aatccgcttg ctcaacagat cttaagcggt aaattattac cgaataaagc cgttacggtg
     2641 gattaccaaa acgggcagat tgttgcaaca caataatgtc tccgatggtg cgagcgtcct
     2701 cgctcgtacc ttacaagcgg tggatttatc gtaaaaattt gcaaaaaatt gctcgaaaat
     2761 aaccgcttgc acagtaaaaa ttttcatatt gcccttcatt aattttcata agctaatgaa
     2821 gggcttttta ttactctttt tgctatcatt aacggcgttt ataaccaata caattacaag
     2881 gagtaattta tgagccaatt atttccggaa gcaacaatcc gcactcaagc cccgtatcgt
     2941 aatgatattg taggcagctt tctacgtacc gatgcgttaa aaaaagccag agaagatttc
     3001 aatcagcaaa aaatcacccg tgacgaattg cgtgaagtca cacgccaaga ggtcaaaaaa
     3061 ttagttgagt tgcaaaagca acacggtgta aaagcagtct ctgacggtga atttagccgg
     3121 acttggtggc atttagattt cttagctgaa cttgatggaa tggattggca agaaaccgaa
     3181 gtctttaacg tgaactttac cggtcataaa cccaaagggc aaacggtaaa aatcgtgggc
     3241 gatattgatt tctccgaaag ccaccctttt gtggacgctt atcgtctttt aaaagaagct
     3301 gccggcgatt acccaaccaa attcacgatt ccggcaccga caatgttaca tattatctgc
     3361 tgtgtgcgtg cggaagatta ccaaccgtta ccacaatatc aagacgaaca aaaactgtac
     3421 gatgatattg ctaatgctta tatcaaagca atgcacaaat tctacgatat ggggctacgt
     3481 aacttacaat tagacgacac cagttgggga caattctgtg ccgaagataa acggaaagag
     3541 tttgcagcca gaggatttaa tttaactgat ttagcggaaa aatatgtcgc attattaaac
     3601 cgtattgttg atgcaaaacc ggcggatatg tcaattacga tgcacatctg ccgtggtaac
     3661 ttccgttctt cttggttctc ggaaggcggt tatggaccgg ttgccgaagt attattcggt
     3721 aaatgccgtg ttgacggctt cttcttagaa tacgataccg aacgtgcagg cactttcgag
     3781 ccactacgcc acattaaaga tcaacaagtg gtactaggct taattacctc taaatttggc
     3841 gatttagaag ataaaaatgt gatcattgag cgtattaaag aagcggctca aattgtgcca
     3901 atcaatcagc tatgcttatc accacaatgc ggctttgcct ccaccgaaga aggcaatatt
     3961 ttaaccgaag ccgcacaatg ggcgaaacta aacttaatta aagaaattgc ggaagaagtt
     4021 tggggtagct aatcctctat aatacaaata gccgagtaaa tactcggcta ttttagtttg
     4081 ttttaacatt acaaccagaa gagataccca acagtcgcaa tcacaaagat agagataata
     4141 tttagccaga aaccaacttt aatcatctca ctttgtttaa tttgccctgt accaaataca
     4201 atcgcattcg gtggggtggc aaccggcaac ataaaggcgc aagatgctcc tagaccaata
     4261 attaaggcta atccgaccgg tggcatattt aatgcttgtg ctatagagat gaaaatcggc
     4321 actaacaaag ccgcactggc tgtgttagag gtaacctcag ttaggaaaat aataaatgct
     4381 gccacaatta aaccaattag gtaaaaatgc cccccttcaa ttagtgagac gaccccatca
     4441 gccataattt tgctcgcacc agtttgtcct aatacagcac ttaacgtcaa accaccacca
     4501 aataggaata atacccccca ctcggtgttt tcttgaatct gttgccaatt tgcgacacga
     4561 gtaatgcaaa taagtgctgc ggcaatcaat gcaagaatgg tgtcaaagct cgcaattttg
     4621 ccattaattc ccagaaatgc agaaataata gggttaattt tatcaccaaa aatccaacca
     4681 agcgcaataa agacgaaaat agccaaggtg ataatacgag aacgatttaa ttcaattttc
     4741 tcaaatgatc gatcaaaact aactgaaaaa tttggtttaa atacgatata tagtgttgca
     4801 atcattaatg ggaataaaat tagcataatt ggcaaaccat attttaacca atcagcaaaa
     4861 gtcagattca attgagaagc aacaatcgca ttcggtgggc ttcccactaa agtacccatt
     4921 ccaccaatac tggcactata agcaattcct aataacacga aaagataagt attatggttt
     4981 tgtttctgat caagtttact taaaatcccc attgccaaag gtaacatcat tgcagctgta
     5041 gctgtattac tcatccacat tgacaaaaac gctgttaccg caaataaata aataactgca
     5101 atcgataatt tacctttagc taatgccata attttattgg caatcatacg atctagctgc
     5161 tgaatgtgta atgctgtcgc taaggcaaag cctccaaaaa ataagaaaat cgttggatca
     5221 gcaaaagcaa caagagcttc ttttgattta accagcccca gtgctacagc caaaatcgga
     5281 attaataatg ccgtaaccgt aacgtgtaat gcttctgtta gccataagac ggcaatgaaa
     5341 attaacaatg ccaacccctt attggcttca ggggtaaaag gcaaggtatt taacaaaata
     5401 ataaataaaa tagcatctgc aacaaaaatc aagctattgc gtgtattttt actcggttca
     5461 ataagaggag tattttccat aaaaacctca caaaatatag ataatcagtg gtatcactat
     5521 atataaaaaa acgatatagg caaatataat tgttgcaaaa gtgtgaagct catcaaaaaa
     5581 tttaacacta aaaaataaat tgcttaaaga tacagcacct ttgcaaaaat aaatcaaaat
     5641 tacaccgctt gtagcgaaag gtattcaatc tctaacccaa atagtgattt tgccaatgct
     5701 tgagtcattg cataactact gagagagcct ttcgcctcag ccagcacaac tcgagtaacg
     5761 ggaatatcgg caagccctaa aaataatcga tagttcaacg cgctttgcaa cggtaaaaaa
     5821 gtaggattaa aagctgcatt ctcagtatat ttaccacaaa caatacgctc acctacttgc
     5881 agtgcaaccc cactaaatgc gttgctgtaa ggggcataag cattattggc agcaaaaatt
     5941 gccgcttgtt gtaaatgatc gcccttaacc tcaaattgtt gcggttgttc atcaaataag
     6001 actttctcaa tccctaaatc tttcggtcca aaactatccg gcaaatagct atggagcaaa
     6061 ttattttggc tatgcggtaa atgtactttt aagcttgccg cactgtttaa ttcattcata
     6121 aattggcggc aatgcccaca aggggtatag ttcacaacca catctgttat caaagtttcc
     6181 cctgctaaaa atgcgtgcga gattgcactt tgctctgcgt gaacggattg ttgcatacat
     6241 tccccggaaa actcttggtt tgccccaaaa tagaaatctc cgtttttgcc aatcgcaacc
     6301 gcccctacat taaaatcgga aactggtgta accgcataac aggcagcaat ggcaatgcaa
     6361 tataaagcca actcaacacg agagcgttta aatttttcac agagttcatc aaccacttcg
     6421 taagagagct gcccgtgaaa atcttgcttg ataagttgct caataatagc ttgtgtaact
     6481 tcacagtttt tcgctgcttt taattgttca aaacgctctg taatgtctgt tcgaaacata
     6541 ctgtacctcc gtttaatgtt ttttatagct gcaaatcagt atccctgccg taatcagtat
     6601 ggcactaata atatggtaag tatgaactga ttcatttaat aaaataatac tgaacattgc
     6661 tgcaaagagc ggcgtaaaat tagtcattac cgctccttta gcagaaccga ctattgcaat
     6721 gccgaaattc caaaacgcat aagagagaat agaagggccg ataaccaaat agcctatccc
     6781 actccattgt aaagcggtca aatttgctaa attttttgca gattctgcta catattcata
     6841 gataaaaaat ggcgttaacg ttagaactgc cagccccact aatacggtca aaaacaccgt
     6901 attgcttata ccttgtggac gtagccgaat cacacaacaa taaaccgccc agcttatagt
     6961 agaagcaatc gcccataaat caccttgatt aattgccaag ctgaataagc gagttagctt
     7021 cccttgcatc aatagccaca gcactcccag caaactgatt attgccccac ttagaataat
     7081 cgggctgatt ttctccttaa aaacgagccg atttaaaaat agcaccaata caggcgaaat
     7141 agctaaatag agactcgcat tcaatgctgt tgtcgttttt aaaccttcat ataaggtagc
     7201 cgggaataaa attaccccaa gcagacctaa tacccacatc acacctaaac gaggttttaa
     7261 taagtgcatt acccgccaag ttgggcgaaa aaagagcaaa actaaaatta aaaaagccgg
     7321 caaccaacgc aaataggtta aggtaatagg ctgaactgcc ccacttaaca ctttgcctaa
     7381 tacaaaattc ccaccccaaa aaagagtagc aacgattaaa ctgaaatacc ccaatttcag
     7441 tgatgatgag atcattgatg acctcgttct acaatcacac ctacactgct tgcttgggca
     7501 accgctttcg gcttatgcag ttcaatccga atccaagaaa gttgatactc tttttgtaat
     7561 agttccgcca gttgataggc aacagtttca actaatttga aaggttgaga ttcaacaaaa
     7621 tccagcactt tttgcgatac ttccgcataa ttcaagcaat attgtacatc atcggtttct
     7681 gccgctttgg aaaaatccca cgccatatca atgttaaaaa ccaagcgttg cttaatcgta
     7741 tgctcccaat tgtaagcccc aatggaagca aaagcggtta gttctcgaat aaaaacctta
     7801 tcactcattt ttcgtcctgt tttattttct gaatttctgt aaaatatagc acaagataaa
     7861 tttaatcagg aaaatttatg aatttaattc cctatttatt gatcttaacc gcctatttgc
     7921 tcggctcgat ttccagtgcg gtcatttttt gtaagctggc aggcttgcct gacccaagag
     7981 aagtcggctc acacaatgcc ggtgcaacga acgtactacg aattggcggt aaaagtgccg
     8041 cattaggtgt gcttttattc gatattttaa aaggcacatt accggtggcg atggggattt
     8101 attttgaact ctctccctca caactcggtt tcatcgcctt agcggtttgt cttgggcata
     8161 ttttcccgat tttcttccaa ttccgtggcg gaaaaggcgt tgccaccgca tttggtgcaa
     8221 tctccgcatt aagctttatt gttgcaggcg gtgctatcgg cacttggcta ctggtgtttt
     8281 taatctccgg ctattcttct ttaagtgccg tcttcactgc cttggtcgta ccgttttaca
     8341 tttggtggtt cgagccacaa tttactttcc ccgtcgcctt agtttgttgc ctattggttt
     8401 accgccatca cgataatatt caacgcttat ggcgtgggca ggaagacaaa ctgtgggata
     8461 aattcaagaa aaatagagca taaaaatagg catagtgaac cgttcgctat gcctatttgc
     8521 aaattattgc ggaaaaatca ccgcttgtct tctcgactaa accgctaaat ctgcttcatc
     8581 tcctcgattt tgtagccatt gtttacgatc ttccgctcgt tttttaccca atagcatatc
     8641 cataatttca aaggtattca attcgccctc ttctaccgtg tcatcaaagg ttaattgtac
     8701 taagcggcga gtgcttggct ccatcgtagt ttcacgcaac tggctcgggt tcatttcgcc
     8761 taagccttta aagcgttgca catttggctt tccttttttc ttggcaaggc gagctaaaat
     8821 cgcctctttt tccgcctcat ctaaggcata atgcacctca tctttgccga tatcaatgcg
     8881 ataaagtggt ggcattgcca cataaacgtg tccgttttgc accaatttcg ggaaatgacg
     8941 aaggaataac gcacacagca aggtggcaat atgcaaaccg tctgaatccg catcggcaag
     9001 aatacaaact ttgccataac gcaactcttc taaattatcg ctatcagggt caattcccaa
     9061 ggctaccgca atatcgtgta cttcttgtga agccaatact tggtctgatg aaacctccca
     9121 agtgtttaaa atcttaccac gcagtggcaa aatggcttga tactctttat ctcgagcttg
     9181 ttttgccgaa ccgccggcag aatcaccttc taccaagaaa agttcggtac ggctgagatc
     9241 ttgagctgta caatccgcca gtttgcccgg taaagccgga ccactcacca atttcttacg
     9301 caccactttt ttcgccgcac gcatacggct ctgggcggaa ctaattgcca tttcagcaat
     9361 taatttacct gtctgcacat tttggttaag ccataaacta aaggcatctt tcaaggtgct
     9421 atccacatag cttgaggctt gacgggaaga caaacgctct ttggtctgcc ctgcaaattg
     9481 tggctcttga attttcagag aaagcacata agcacaacgg ttccacacat catcagcggt
     9541 taattttacc cctttcggca ataaattatg gatttcgcaa aactccacca tcgcctttaa
     9601 taaaccgtta cgcaagccat taacgtgcgt gccgccttgt gcggtcggaa tcaggttcac
     9661 atagctttcc gctactaact cgcccccttc cggcaaccaa gttaatgccc agcttaccgc
     9721 ctctgtttca gcagtaacat caccaataaa cggtggattc ggcacggttt cataaccgtt
     9781 taatgcctcg ctcaaataat cagataagcc gtcttcgtaa taccaacttt cttcggtatt
     9841 gttgatttta tcaataaaat tgatggtgag tttcgggcaa agcaccgctt tggctcgtaa
     9901 caaatggcgt aaacgactca ccgaaaaacg agggctatca aaatattttg ggttcgggta
     9961 aaaacgcact gtcgtgccgg tctgtttttt cgggcaagta ccaattaccg tcagatcttc
    10021 cacttttacc ccgttggcaa aggcaatcga atagacttct ccgccacgtt taatctgaat
    10081 ttcaacccgt tcggacaggg catttaccac cgaaatcccc accccgtgca aaccaccgga
    10141 aaacgtatag tttttattgg aaaatttacc gccggcgtgc aatttcgtta agataagctc
    10201 cacccctgaa attttctcgg tggaatgaat atcgaccggc attccccgcc cgttatccac
    10261 cacttccaac gaattatcag catgaagaat cacatcaatt ttatctgcaa agccggacaa
    10321 cgcctcatcg acactattat caatcacctc ctgccccaaa tggtttggac gtgtggtatc
    10381 cgtgtacatt cccgggcgaa gctgcaccgg ctcgaggtct ttcagaacgg taatttcatc
    10441 cgccccatag cgtttttcag acattatgct ttctcttagg cttaaaataa aataaggctg
    10501 aattttaagg aatattcagc tattttgcaa aattttggtg aaaaatgacc tgttgttatg
    10561 caataaaaac tatttttgcg atctacatcg aaaaaatgag ttttaatttc cctatttgct
    10621 tattcattca gtatcttaat ctcacttttt attttaaaat ggtactatat tatggtagta
    10681 aaaatcctaa agcggaaatc tcaaaagaca ctacaacaaa tctacaccca gcctatttct
    10741 gccaatatta aatggacaaa tatagaagct ctttttctag agttaggagc agaaatagaa
    10801 gaacgagaag ggagcagaat tgcagttgtt ttatttcaac aggtcagagt atttcatcgc
    10861 ccacacccga atcctgatac agataagggg cggtagcgag tattaaaaaa tggttatctg
    10921 aaaacggagt cattccttat gcgtaatatt atggatatta atggttataa agctgtcatt
    10981 gcttacgatc ccgaaacaga attatttcga ggtgaattta tcggattaaa tggtggagcc
    11041 gatttttatg ccgataatgt cattcaatta aaaaaagaag gtgaactaag tttgaatatc
    11101 tttttagaac tttgtagaga aaaaggtatt gagccgttca aacaatattc cggaaagttt
    11161 aatgttcgcc tttcgcctga attacataaa gctgcggtaa ttgcagcaac tgctgaaaat
    11221 ttaagcttaa atgaatggat taaccaaacg ttagaaaaga gcgtgtagcc taattgcaaa
    11281 acaatcacct attttgaccg cttgtattac ccgtttaacc cattcaatat cgaacactcc
    11341 gaattggcgt tgccacagca agagctactc cagcttttga gcaaagtcag catttggttt
    11401 aaatcggcaa ttttttgttc aagctcaccg atatgctgtt cggttaattg ttttacatct
    11461 cggcttgagc ggtttgggtt gtcgtttaat ttaagtagtt cgctgatttg agccagcgaa
    11521 aagcccactt ttcgggcatt gctgataaaa tgtaatcggc tcaaatcagt agcattgtag
    11581 aatcgatacc ccgcttcggt gcgacttgtc ggcggcagaa gtcctgcttt ttcataatct
    11641 cggatttgtt tggcggaaag cccggttttt tctgcggctt ggctaatatt cattataatc
    11701 ctctcacttt aatcgcttga ccttaaccta aggttaagct ttattatacg cctgaataat
    11761 cactcaaaac aggagaaaat gatgacaatt accctacaac ttgatggctt acattgtggc
    11821 aactgtgtga aaagtgtcga aaaagcgtta aatggcgtgg ctggggtgaa ccaagttagc
    11881 gtaacgttag aaccgcaaat tgctgtggtg gaaggctcag cagaagcaca agccttaatt
    11941 gaagcggttg aagacattgg ctttgacgca aaattagcct aattaataag gggcagaaat
    12001 tttgccctaa tctgcccaat atttcggagg ataaatgaca agcacagctc actattcgcc
    12061 agaacaacaa cttttgattg atggaatgca ctgtgccgcc tgtgttcggc gagtggaaaa
    12121 agccttactt aaagtggaaa aggtggaatt tgcctcagtc aatcttgccg atcaaaccgc
    12181 ttttgtgcaa ggcaacgcca accctgaagc cttggtagca gcggtagtta aaatcggttt
    12241 tggggcagaa gtgctggaaa gcgaggaaga acgccgaatt aaacaacaag cccaaacgca
    12301 acgagtgtta gggcataaac gcactcaatt tatgcttgcc cttgtagttg gttttgcctt
    12361 agttgctttt gggttctaca aaggaatgac ggtaaacgaa accaatcgtt cgctttggct
    12421 cagctgggca ggtattagcc ttgcgacaat gtatttttca ggtaaagatt tctttcttgg
    12481 ggcattttca gcactgaaaa accgctcagc caatatggac atgttagtag caatcagcac
    12541 cggcacggct tggctctatt cttgttggct cacgcttttc ccacaaccga atgctcacgt
    12601 ttattttgaa gccagcgtga tgattctcgg ctttatcaat ctaggaaaat acttagaact
    12661 gaaagccaaa cagcgttcct cgctagcatt ggaaaaattg ctggatctcg ccccaaaaca
    12721 agcggtcatt tttgaagaaa atattgcaaa aaccattccg gctaaagcaa ttaagccaca
    12781 aatgcgggtg caagccttaa ccggtgaccg cttggcggtt gatggtattt tagacagtgg
    12841 ctctatttgg gttgatgaat caatgctcac cggtgaagcc ctacctgtag agaaaaaaat
    12901 cggtgataaa gtgcgagccg gcactctggt gcaagacggt tcaggcactt acattgccga
    12961 acaggtcggc tcacaaaccg ctttggctcg tgtaatcaat gccgttcgcc acgcccaaag
    13021 cagcaaaccg ccattggcac agtttgtaga taaaatcgcc gctgtttttg tgccggtggt
    13081 ggtttcaatc gcattacttt ctgcgttaat ttggctggca gttgggcagg attttgcctt
    13141 tgcactctcg atttttacta ccgtgttgat catcgcttgc ccttgtgcat tggggctggc
    13201 aattccgctt tctaccattg ccggcgtggc acgttctgcc gaatttggcg tgctggtgcg
    13261 aaatattgag gcactacaag caagcagtga aatcgacacc ctagtgttcg ataaaaccgg
    13321 cacactcacc actggcagaa tggaagtgtc ggatgttctc acctttaacg gatttgagca
    13381 aaagcgcttg ctacaacttg ctaaaagtgt agagcaacac gcctcacacc cgattgcgaa
    13441 agcgattgca aaatttgccg aaaatcagac cgcttgtggt gtaaccgatg tgcaagtgtt
    13501 gaaagggtta ggcatttcag caaaatatga aggcagtaca atcagaatgg gaaattggca
    13561 atttgtaggc gaaaccattc aagcaaatct tgcctcccta ttgcccgcta aagaggggga
    13621 tttttcctca aaaatttttg tttcggtgga taatcaactc gccggtgtat tgtcggtttc
    13681 agaccaactt cgccctgaag cgaaagcaac cattcatcaa ttccaagcgg aaggctatca
    13741 atgcgtgatg ctgaccggtg atcgccaaca aactgccgac tatttcgcca acgcattggg
    13801 gttagacggc gtgattgcgg aggtattacc ggagcaaaaa gcggaaaaaa ttcgagcctt
    13861 gcaagcagag ggtaaaaaag tagcaatgat tggcgacggc ataaacgatg ctccagctct
    13921 ggctcaagcc aatgtgggca ttgcgatgca caatggttca gatattgcag tggaaaccgc
    13981 cgatctttcg ctgatgcgag aagggctagc accactgatg caaattctac cgttctctaa
    14041 aaaagtgctg aaaaatatga agcaaagttt gctcggggct tttatctata atgttattgc
    14101 gattcctatt gctgccggcg tgctttaccc tttcaccggc tggctactca acccaatgat
    14161 tgccgccatt gcgatgacat tgtcgtcaat taccgtggtg ttaaatagtc aaaggttgtt
    14221 gaaataattt aagcggtcaa atttgcatat ttttttgcaa atttgaccgc ttgtaatcac
    14281 taatccgcca aaaacagcgg cccaagaggt gttttcggaa tgccaaaatg ctcagggtaa
    14341 tgcacctcga ccaaatatag cccctcggct ttcgctgtag gggcagcttt ttcccggtca
    14401 cgttgctcca acacccattt tgcccattcc acaggctgtc tgccttgccc gatttcgagc
    14461 aatgttccca caatattgcg aaccatatga tgtacaaagg cgttggcttg aatatcaaca
    14521 atcacataat tgccttgccg agacacattt aaatgatgaa tattccgcca cggcgtatta
    14581 gattggcatt tggcggcacg gaaagaggaa aagtcattct cgcccagcaa atactgccct
    14641 gcttggtgca ttttgcgttc atcaagggga aagtgaaagt gggtaacacc tttaggtaaa
    14701 attgccgacc gcagtttttg gttaaaaata atatagcggt aacggcgggc ggtggcacta
    14761 aaacgggcgt gaaaatcctc attcaccgct accgcccatt tcaccgcaat atcatcgggt
    14821 aaatgagcgt tagtgccgaa acaccagctt tgtagcgggc ggtttgcttg cgtttcaaaa
    14881 tgcacgacct gccctgtgcc gtgcacaccg gcatcggttc tgccggcaca aaacacttct
    14941 acgggcgaat tggcaacaac cgacaacgcc tgctctagct gttgttgtac actctctacc
    15001 gcttcttgtc gttgccagcc aaaataacgg ctgccgtcat attcaatacc taatgcgatt
    15061 ttcattttaa taccttgata aaaagagggg cgaaaaattt ttcgccccca cagtaattga
    15121 tatttgcaat tatttattca ataagcctaa aaattctttg cgggtttctc ggtcttctaa
    15181 gaaaacaccg ccaaaggcag aagtaactgt atagctattg gtgtctttta tgccacggca
    15241 tttcacgcaa aaatgggtgg ctttcacata caccgcaaca tcgtctgttt ctaaaatagt
    15301 ttgaaaggca gttaaaatct gttcggtaaa acgctcttgc acctgcggac gttgggcaaa
    15361 aaactgcacg acacggttga ttttcgagag tccaatcacc cattttttcg ggtaataggc
    15421 taccgctact ttgccgtcaa tagtaacaaa atgatgctca caggtagaag ttaaagtaat
    15481 atcgtccacc agcaccattt cactgacttt cattcggttt tcaatattgg taattttcgg
    15541 gaaggtagca taatcaagcc cgctgaaaat ttcatcaaca tacattttcg ccaaacgatg
    15601 aggcgtttct tctaagctgt catcacttaa atctaaaccg agcaattcta aaactgcctg
    15661 catatgctgc tggatttctg ctcggcgact ggctttatct ttggtatgag taacagtcgg
    15721 agtttcaatg ccttttgcca acaaggcttg gcgaactttt tgagcctccg gcgaaagcgt
    15781 gttttctgtg atagttaatt cgggcgagat cgttgtcatt ggttttcctc tcaaatgtaa
    15841 gctgaagatt ctaacaaatt gacatcaaaa aaaatagctc taaaatgagc tatttcagcc
    15901 ataaacaccc tctttattta tgcaaaatat acagtatctc tttaatgccg acctgattcc
    15961 cgaacatcaa gctgaatttg tgcagtctct cttaacttgc aaaaattttg acaattccga
    16021 ccgcttgcta ggcttctcaa aagggcgagg tacgacttgg tttttagata cctctgctga
    16081 actaggtatc aatgtggtgc ttcgccatta ttatcgtggc ggcttgttcg gtaaaatcat
    16141 caaagatagt tactttttta ctcgctttga ggccacccga gcgtataaag aatttttctt
    16201 actgcaacaa atgttagctt ggggtttacc tgtgcctcgc cctgtggcga ttaaaataga
    16261 aagacatttt tgttgctatc gtgccgacat tatgctcgaa aagctagaaa acacacaaga
    16321 tttaagcaaa atcttgcaat cccattcttt atcgaacgaa caatatgagc agatagggaa
    16381 actgattcgc agtctgcata accatcaaat tcaccattcc gacttaaata tccataatat
    16441 tttgcttggt aatgatggca aattttgtct gattgatttt gataaatgcg gcattgagcc
    16501 gggcgaaaat tggaagcaaa ataacctaga ccgcctgtta cgctcgttta agaaagaaca
    16561 agggcgatta aatattttct tcagcgaaga aaattggcag gctgttttga gaggatatac
    16621 tctctaagaa acaataatgg cacaagctta gaaacttgtg ccatcaaatc atcaatatta
    16681 actacttcac ttcacgaatc ataatttcag acggaatcac actgccttgc cagtaaagtt
    16741 cagaagctac tttttccgct aatgcgaggt aggcttggct gatttcgtgt tccggagctg
    16801 ccaccaccgt tggcacaccg ctatctaaat cttcacgcag acgaatatgt agtggtaatt
    16861 gtgctaacac tttagtgcca tatttttggg cgattttttc cgctccgccg gtgccgaaaa
    16921 ttgcctcatg gtgtccgcag tttgagcaga tatgcattga catattttca atcaccccaa
    16981 gcactggtac tgagactttc tcaaacattg agatcccttt aatcgcatct aataaggcaa
    17041 tatcttgtgg ggttgttact accaccgcac cggtcaccgg aatttgctgt gaaagcgtaa
    17101 gctgaatatc acccgtaccc ggtggcatat caatgaccaa gtaatccaat tcattccacc
    17161 aagtttcatt taaaagctga cttaacgcac tgcttgccat cgggccacgc caaatggtgg
    17221 cgttatcttc ttccattaaa tagccgatag aattagattg caagccgtga gcggtaatcg
    17281 gcgtgatgtg cttgttatca ggagaagttg gacgttggtc ttttgctccc aacatatgcg
    17341 gaatagatgg gccgtaaata tccgcatcta aaatccccac tcttgtccct tgtgctcgta
    17401 aggctaaagc aagattaact gaggtcgttg atttccctac cccacctttt cctgaagtga
    17461 ccgcaatgat attttttacc ccattgactg ccgggtgttt attcgcccgt tttaaggtcg
    17521 caatttggta atttaatacc cattttacac cgcttgaacc tgttacttgc tttaatttag
    17581 cctctgtttc ggcttttaag gtttcaaaac cactgttcca cgcaaatggc atcgtgattt
    17641 caattctaag aatatcgccc cctaattctg cttttttaaa cgcattaagg gcaattaaat
    17701 ctttctgtaa agtcgggtgg gaaaattgtt gcaagattgc tttaatttca acaagttgct
    17761 gttcatttaa ttggttcatt ggttatcctt gtttgctaaa ttgcgtttta aatctttgct
    17821 ataaattact tcgctatcgt tattcaaatc aatacccaaa agggaggaaa caatcccaac
    17881 ccgatgatgg tattgaaata atggcaatac ggcaacatcg ctataaagct gctcgctaat
    17941 ttcttgaata agtgactctc tcgcttctgc actaagcgtt tctgtttgta aacgatttaa
    18001 tttttgatcg actatctcac ttttatagcc ggaatgatta tccgggctca ttgaatgaaa
    18061 cttctgcaaa aatacaatcg gatcaggata atctgcacac cagcctgctc gtgctatctg
    18121 gtaatctttt tgttccctta ctttatttaa agtctgccaa tcaaccattt taggtgtaat
    18181 attaaataat tctgattgag aaagggctcg agtaacttgg ttagcaatat taatgctatt
    18241 ctcatcatat aacaaagtca gctttaaagg attataaggg ctaattcctg cttttgttaa
    18301 tagctgctca accacaacag gattccaacg cttttctcta tcttttacta agctatgtgg
    18361 aattacagac tgactcggaa ccccatattc ttgcccacta tttgctgaag ccaccattgt
    18421 ccttattgct tcacgaatct ctcgtttagc taataatgga tcatcaaaat tgaactcata
    18481 gtaataagag cacaaacgcg gaaatttcac gatattcgtt tttttattta ataaaggatt
    18541 ctcgacaata tcaaaagcag agcagttttg gatagttgta attaaatcat actctatagt
    18601 ttgaaaggga atttcttggg ttcgagcctt taacaccatt ttttgagcat ctagtttctc
    18661 gagacggtaa gacgcattgc tcacgaagtt atctatggtt ggagcaatcc cttgataagt
    18721 aggtaataat gcggaatgtg ccagcatttc aggcaattgg tgatttgggt gatttagccg
    18781 aattctcaat gtatgcgcat ttaatgcctc tacaccgagt tcttcaactg actttatttg
    18841 ctcttcaatc gcttttgcat tttctatacc catatagatg agatatttag acaatacaga
    18901 atgattttga ggatctatta aacgtcgcca gcttgctaca aaatcttgtg cagtcacagg
    18961 ttggccatta gaccacacag ctttctcatc taaaataaac aaccactctt tttcatcttc
    19021 agtaaaccaa ttctgagcaa tggccggaac gacatcacct tttctgttgt aggccgttaa
    19081 accgactaat agatctctta aaggagcagc atctgcagaa gctttaattt tatgtgggtc
    19141 gagttgaaat acagcagaat aaattgcacg tttgagtaaa gtatcactct gccggttttc
    19201 tacccagaca gattgaatgg attgagggca aattaattga tcacaagatg taataagcag
    19261 aatgcaagcg gtaacttttg caattttttt tacaaatgta accgcttgta aggatttcaa
    19321 cataaactcc ccaaaggtta attaagattt attttacaag aagcacagga aataaagttg
    19381 taattcctgc cacaataatt tcaattccca gcgccattaa aatcagcccc atgatacgag
    19441 taacgacatt agatcctgtt ttgcctaatt ttttcaccaa aggggctgaa tagcggaata
    19501 aaatataaca aattaatgca aatacaataa tcgcaatgct aaagccaaca tagtcttccc
    19561 aagtatggta gcgggttccc cacacaatgg ttgagccaat tgcccctggt cctgccataa
    19621 tcggcattgc taatggcacg acaccgatat tttcgtattc agtaatatct tcatttttct
    19681 cttctttatt ttgtttgtgt tcacctaatt taccgctaat catcgtcatc gcaatgctta
    19741 caatcaaaat gccaccagct actctaaaag agctaagtga aatgctaaac gcattgagaa
    19801 tcagattacc aaaatagagg ctgactaata aaattactcc aatagaaaca gcggtgatta
    19861 agctggtgcg atttctttcc ccctcatatt ggtgagcggt catactgaaa aaaataggca
    19921 aggaaccaaa aggattgact atagcaaata gaccaatgaa gaattggagg tagatggcaa
    19981 aattaataat gatatccaca aaaactttct caaacaacag tgtttcgggc gctattatat
    20041 cggttaatca aggtagatac aaaccaaaag cacccagcct aaaggacggt tgggtgcttt
    20101 ttgataaaat gaaaggcttg ttagtgtgac gaacgttgct gcataaaatc ttcatttacc
    20161 tcaattgaag cttttgcacg tagcgattgt aagaattcat tacgtaaaat taaacgatta
    20221 gcttgttcaa attgtggcgc caatgtctta aactgttcag cattcccttc cgtaatgtta
    20281 tctaaggcaa caataactac atcgcccttt tgattacgtg ccatttgata agtcgtttta
    20341 tcttgcgcct ttttcattgc gaaaatcgtt ccagccaata ccgggttttc tacttctgct
    20401 tgcatataaa ctaaagtttg tggcgcatta aatttcacgt ccactgattt cccttcattc
    20461 aaggctttta cattttcttc tactttcgcc agcaacgctt tttccgcttt ttctgccttc
    20521 acaaaatttt caactgctgc ttttgcttca tcaaaagttt gtggacgttc tgcatcataa
    20581 tcactcactc tcacaaacaa tgtctgtgga tttgcatcat tcccaacatc taaagcatca
    20641 gaattttgtt tattttggcg tagctctcct tcaaacaaaa cttttaatac tttctcattt
    20701 tgtaaagcag taggtacgtt ttcacgggta aacagatccg ttttttgcag ttccacatta
    20761 ccggctttcg caacttcttc aagtgaagaa ttattctcaa aggctttatt tgccatttcg
    20821 cgcgcaactg taaaatactc agttaacact aattcttggc gaatagtttg ggcaatttta
    20881 tctttcactt gtgctaactc aatcacttgc tcaggtttac gctccaatac tttgatgata
    20941 tggtaagcat tatccacttt caccgctgca ctcatctggc cggcagttaa atttgctaca
    21001 gcatcttcaa aagctttcgg gaaagtgcca gcttttgccc aacctagatc accaccatta
    21061 tttgctgata aagtatcgct agatttgttt tttgccaaag tagcaaaatc ttccccattt
    21121 ttgagcgctt gctcaatagc ctgtgcttcc gcttcactag cgacttgaat atgagctaaa
    21181 tgggcttcac ctttagttac ataatcggct ttattgcgat catagtaagt ttgaatttgc
    21241 tcattggtaa tctcaacttt gctttccaca tcttttggag aaagagtaac gtactcaacc
    21301 gctaattttt caggtgctaa taatttagtt ttatttgctt cgtaataggc tcgcaattct
    21361 tgctcggaag cggtctgatt ttccatttct tttgcaactg aaaattcggc taaacgcact
    21421 tcacgttgtt gcaacagtaa ttttgctaac aatgcctgct gtgccggtac attaaaatca
    21481 ctattgataa tcccctcttg tagctgggat tgcaacatac cttcctgcac aatcgctgca
    21541 tagccatcgg cacttaaatt attgtggcgt aatgtttgtt ggtataactc gttactgaat
    21601 ttaccatctt gttgaaacat ctggctgttt acaatttcag atttgatttg atcagcacta
    21661 atacctagtt ttaactcttt tgcatactgg cgcagaagct cttcatcaat taatccattt
    21721 aataccgatt gattaaattg agcagcatac tccgggctat ccattaaatc ccaaaagcga
    21781 ctccccagtt cagcatttaa tctattttgc tcacgattaa gcgtgttatt aaataattgc
    21841 tgactaattt cttccccatt tactttcgct acagaattat cttgtgaaat caatcctgtc
    21901 ccaattccac cgattacaaa tgaaatagag actaatgcaa aaataatttt aaagaccggc
    21961 ccatttgtcc gctcgtgcat tttttcaatc atttaaaaat tcctaaatta ctcaaaaatt
    22021 gtcgctgatt atactctttc tcaaatgaga aataaacttg caaattttta ttgaaattta
    22081 accgctttct ctttaaaatt cacagtccct gtcgtagctg agttagagat cggctattga
    22141 tgtattatca acccttaaca aaaggaaatt aaaatgtctc taagcgtaga agcaaaagca
    22201 aaaatcgttg ctgaatttgg tcgtgatgca aaagacactg gttcttctga agttcaaatt
    22261 gcattattaa ctgcacaaat caaccactta caagcacact ttgctgagca taaaaaagat
    22321 caccacggtc gtcgtggttt attacgtatg gtttcacgcc gtcgtaaatt attagactac
    22381 ttaaaacgta ctgatcttgc taaatattcg gaaactatcg cacgtttagg tttacgtcgc
    22441 taatttcaaa tattagatat gagagccgag ctgaaaagtt cggctttttt ataaatttta
    22501 ttcgaggaaa aaatatggct tttgcgtcat tatttacatt attagacgat attgctgccg
    22561 tgcttgatga tgtatcgatc atgactaaag tggctgctaa gaaaacagca ggcgtaatcg
    22621 gtgatgatct tgccttaaat gctaatcaag tcagtggaaa gaatgtggtg ccagaacgag
    22681 aactaccgat tgtttgggct gtagcgaaag gctcattaat caataaagtg atcttgattc
    22741 cactagcgtt gctgctatcg gtctttttac cgcaggctat tatcccgcta ttaatgatag
    22801 gcggtgcata tttatgtttt gaaggcgtag agaaattact ccatcgtcta ttacataaaa
    22861 acaatcaagc tcattctgat gaaaccgaaa ccctttctga aaaagataaa attaaaggtg
    22921 caattcgcac cgattttatt ctatcagcag agattatcat tattgcgtta ggtgttttgc
    22981 aagactcttc aaccctaacc caaattttat ctctctccgc tatcggggtc ggaattaccc
    23041 tgtttgttta tggcttagtt ggattaattg taaaactaga tgatatcggt ttatggttaa
    23101 tgcagaaaaa aagcacattc tcacaagcgg ttggaaaagg cttattattt gcaatgccgt
    23161 ggtttatgaa aggactttct gtgattggta ctattgcgat gttcttagtc ggtggtggta
    23221 tttttaccca taatttacca atgattcatc acttcgtaga acaattcggt atctctcccc
    23281 atttttctac tctggttgat tttgcagtgg gtattgtggt tggtattatt gcatgcttaa
    23341 ttattttacc tttgatgaaa ttattttcta aaaaggcgca ctaatcccca aaagcgtagc
    23401 tttggttaaa gctagctttt tatctcttgc tataaaaaaa tagcaggttt caagcctgct
    23461 atttttttaa ttattataat gagttagact cagtggctgt ttgcggtaag gctaatggct
    23521 cattaacttt agactgagta gccatattca cctgtttgag attttcctca cgaatacggt
    23581 ttgccattaa tgtatccccc atctgctctg ccacgtgcag tgccataata cgatcatcag
    23641 caacacattc atcatgagcc aataacaatt caaactgaga cttcgctttt tggtattgcc
    23701 catctcgtgt ataaatatag ccaagcgctc tagcataatc atcggtatat ttaacattcg
    23761 ctttatctgc ccgttttgct aatactttta gtagcttact gtcagaatca atttgtaaac
    23821 gggttaattg cacaaataaa ccttgtaatt gctcatcttc aaatttcttc aacgtttcta
    23881 aagcaatttc ttgtgcagat tgatgatcgt cactatcaat taaacgcttg atgacaccga
    23941 cacgactata caccgattta cgacgacgat ttggttggtt ttcccaccaa gaaagcaagc
    24001 cttcctgccc ttcttcctgt aaacgctcat cttgtaaacc atcatcaacg aaatactcta
    24061 actcagcata ctcttctgca gttaagaaat tacgttggcc gatttcaact aataatctat
    24121 ctaacgcaac ataagctctg gattctttat aaatttgaat cgctaagcgt aatacctcat
    24181 cgctatgagg tgcaagctct agtaggctat caatcgcagt tcgggcagcc ggtaattttc
    24241 cttgttgtaa taaaattcgg gttcgtacca actccactgc aacattattc ggtccagcta
    24301 tttcagttgc cttaattaaa tatttatttg cagctaaatc atcaccattt tgctgagcag
    24361 cttccgccgc tttaattaaa ttcagtacag gctcatctgc atgttttgca tttttactaa
    24421 agagtttttc cgcttttgag taattccctt cactcatacg cattaaacct tccagtgttt
    24481 cttgctgagc ttttttatgc ttacgagttg agaaccagtt ataagctcca ttactcatac
    24541 ggcatatttt agtgacaatc cattcaagta aataaactac cgccattgcc aacacaaaaa
    24601 aaaccacaag cattacaatg ctcatttcaa tcacggtagt tgctgtttca attctgacat
    24661 aaccttgatt tccggctaaa taaggcccag agattagtcc aactaataat aaaagcatca
    24721 aaaagagcgt tctaaacata atctattctc ctttttatta ttgtgctgaa agaggcatcg
    24781 catcttgctc tgcttttaca ggctctgctt gctctaattc tttttcagct tttatttcga
    24841 ctttctctat tttttcaggg gttttattaa gttgctgagc aatcaccttt aagctttgta
    24901 atgaagttgg agcatccaca taaatagttt gttctgccaa ctcatctagc tctttcaaga
    24961 aatgttgcac attttcattt gaagtttcaa aataacttct tacccaagag cctaccgttt
    25021 gtaacgattt tttataaagt tcgctttgct ggcgaggaac agctaaaatc gcaatttgta
    25081 aacgcaagcg aatgttttca cgcaaataaa tttcttgatt cggtgcaaca aaggctttct
    25141 catctgctgc attacgtttc gatacacgaa taaaatgatc taaaaatgaa gcagcacttt
    25201 tttctaaatt tttctcccaa tccgcaagag aatcacttac ttgcccatct tgtttgctat
    25261 ttgaagcttg ttcactttcc aaaatcggca aatcatctaa tttattcgct aaatttgcga
    25321 cacgctgcat taaggcattt tgatcgatct gatgcaatgc ggttaatgta tttaaatcag
    25381 ttttgattgc ctcacgaatg tgaatcgtat tcggtgcttt tgataaaact tgatctgcct
    25441 ctaacaataa atttttcgct gtttcaatgt cattatctaa caccacttta cgagccgcat
    25501 tattcaatag gaaatctgcc tcagataata gccagaatgt gttatccgaa ccagaggtat
    25561 tatttagctt ttgcagttga agctgcaaac tactaatttg ctgggtataa ccattttggg
    25621 ctgtttctaa agctttaatc cgttctaaag ctttttgata ttccgtgacc aattcggcaa
    25681 tttgtgcttt ttcattttcg aaatttggca tctcaaccat agtttgagta gtaggctgat
    25741 ttgctttagc agatactgcc tgaatttgag attcaacctc tgcaaacttt ttatttgcca
    25801 tataatgacc agctccgcca accgctaaag ccactaatag tgcaactaat gccaagccct
    25861 ttccgcccga tttttgaaca accacttgtt cttttggcgc tttttgcatt tctgtttgaa
    25921 tatctttctc tatagcttcg ttcactacat cttcctcaat ctcttttttt gcaaaagatc
    25981 ccgctgaatc gaccgcttgt tgtgcctctt ctaccacctt ttcagctgaa tgctctaaat
    26041 gttcagttac ttttttagat cttgacatac tcgccacctc tagttagatt tgcccacttt
    26101 aaataataat gtattcatca aagttacatt atcggcttta tccgataccc taatcttatc
    26161 ttcttgccag cccatttgtt tagctatctt tgcaatccgc cggctcacta caaccagatc
    26221 acattcaaat aaccatgctc tacaatctgc tttcgcttgt tcataaagtg atcttaaaat
    26281 ttcactactg gtgatcacaa tagtatctac tcccaagcgt ttacataagc tgattttttc
    26341 gggaatatca tcggtaaccg gctctctacg ataacactcc aaatattgaa tagttgcccc
    26401 acgcaagact gcagtttcag caagtagctc acgcccagaa tcggctctta gaattaaaat
    26461 agttttatca gttagattct gcatttcagg taatgccaaa accccctcgc tattttcaaa
    26521 ttctatcgga taaatgaccg cttgttcagc tttttctgtt aaatatttcg cagtccgttg
    26581 ccctaccgca aaatatttca aatctgaacg aaaatggaac ccggtatcta ctaatgtttt
    26641 tgcagcatag tccactgcat tcggcgaaac aacaaataca taatcgtctg attttagccg
    26701 agaaatagcc gaaggaagca aaggtaattc tttaccggct tcaatcgtaa atagcggttg
    26761 atgaatagca aaaatttgct gttcattcaa catatctacc aattcttgcc cccgactatc
    26821 caggcgtgtg accaacacat tcattattgt acgttttcgt tataaaccgc agctaaaatt
    26881 ttatctgcac cttgagcaag caactgttcc gccaccaaaa tgcctaattg ctccgcctct
    26941 tgcttatgtc cttttgccga agcccgaata atttgtgagc catctaacga tccaactaac
    27001 gcattaagcg ttaattcatc gccctctaat gtagcataac caccaatcgg cacttggcaa
    27061 ccgccttgca aacgggtatt cattgcacgt tctgccatca cgcaacaagc ggtcgaacta
    27121 tggtttaatt ttgcaatgta gttcaaaatc cgttcatcat tggctcgagt ctcaatccct
    27181 actgctcctt gaccagctgc gggtaatgat tgttccacag aaatatagct acggattcgc
    27241 tcttgcaagc ctaaacgaat taagccggca gaggctaaaa taatcgcatc atactcgcca
    27301 ttatctaatt tgcttaagcg agtgccgaca ttgcctcgca atgatttaac ctctaaatgc
    27361 ggatatttcg ccattaattg gcactgacgg cgtaagctcg atgtaccgac cacagcacct
    27421 ttcggcaaat cttctaacga atggtagttg ttcgacacaa acgcatcacg gggatcttca
    27481 cgttcacaaa tcaccgcaag ccccaagcct tcgggaaagc tcatcggcac atctttcatt
    27541 gaatgcaccg caatatcagc tcgattttct aaaagggcta attctaactc tttcacaaac
    27601 aagccttttc cgccaatttt ggctaatggg gtgtctaaaa taatatcgcc tttcgttacc
    27661 atcgtaacca gttcgacaga taattgcgga aaatgttttt ctaattcgct ttttacaaaa
    27721 tttgcctgcc ataaggctaa cgggctttga cgggttgcaa tgcgtaaaat atctttcata
    27781 aattctaaaa ttaaaacatt gagttaatga attatccta
//
LOCUS       DANLVT010000022        25904 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.022, whole genome shotgun sequence.
ACCESSION   DANLVT010000022 DANLVT010000000
VERSION     DANLVT010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 25904)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25904)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25904
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.022"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            100..378
                     /gene="ftsB"
                     /locus_tag="PXC99_000804"
     CDS             100..378
                     /gene="ftsB"
                     /locus_tag="PXC99_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsB"
                     /protein_id="HDL5417280.1"
                     /translation="MRLLITFFALLLGFFQYSFWFGKNGWSDYQEVQEEIALLKVENT
                     KLTSRNKLIEAEIYDLKNGVDALEERARLEREMVKENEMFYRIVPKNK"
     gene            396..1079
                     /gene="ispD"
                     /locus_tag="PXC99_000805"
     CDS             396..1079
                     /gene="ispD"
                     /locus_tag="PXC99_000805"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HDL5417281.1"
                     /translation="MKRKIIAVIPASGVGSRMQAEKPKQYLQLKGKTILEHTVSIFLE
                     HPHVEKVIVAVARKDPFYSTLELLKSPKIQLVFGGETRADSVLNALQEINTENAWALV
                     HDAARPCLKRSDLDKLLQINDPQGGILAIPAVDTMKRANGTKIAHTEDRSTLWHALTP
                     QFFPAQALKQALSSAFANKLQVTDEASAMELAGYQPQLVSGRSDNIKITRPEDLALAE
                     FYLTHNLEN"
     gene            1081..1560
                     /gene="ispF"
                     /locus_tag="PXC99_000806"
     CDS             1081..1560
                     /gene="ispF"
                     /locus_tag="PXC99_000806"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HDL5417282.1"
                     /translation="MIRIGHGFDVHAFGEDRPLMIAGVEVPYHTGFIAHSDGDVALHA
                     LTDALLGAAALGDIGKLFPDTDMQYKNADSRGLLIEAYRQVQEQGYQVGNVDVTIIAQ
                     APKMRPHIDKMRQVIADDLQCDISQVNVKATTTEKLGFTGRGEGIACEAVALLLKRA"
     gene            complement(1675..2533)
                     /locus_tag="PXC99_000807"
                     /pseudo
     CDS             complement(1675..2533)
                     /locus_tag="PXC99_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253606.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
     gene            complement(2530..2988)
                     /locus_tag="PXC99_000808"
     CDS             complement(2530..2988)
                     /locus_tag="PXC99_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HDL5417283.1"
                     /translation="MGLFSFLSNKLPIDTQRIEQAIADLEQKTSAELRVVVERKAKIG
                     KTDNAAMLRASELFDELKMRETAEHNGVLIYLSFKPHYAAIIGDEGIHQKVDNDFWQK
                     IYATMCLDCQQGDYTQAICDAIKMVEAPLAHHFPYQADDKNELSNEVVVK"
     gene            complement(3070..3654)
                     /locus_tag="PXC99_000809"
     CDS             complement(3070..3654)
                     /locus_tag="PXC99_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HDL5417284.1"
                     /translation="MKKIFWILLIAMLAVGGYSLTKYNDLMRAEEDINSVWGNVESAY
                     QRRADLIPNLVNTVKGQANFEKETLTSVIEARAKATAVTIDPSNATEEQMAKFQEAQQ
                     GVNSALSRLLVSVEKYPELKAHEAFLNLQAQLEGTENRINVERNNFNEKVKEYNKQVR
                     EFPTKLAAMIMGFKAKPQFKSEAGSDKAPTVNFN"
     gene            3832..4695
                     /gene="rarD"
                     /locus_tag="PXC99_000810"
     CDS             3832..4695
                     /gene="rarD"
                     /locus_tag="PXC99_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL5417285.1"
                     /translation="MLKGILASLAANVLFGAVYYFAILLRPLEGEAMFGFRIVVVIPF
                     ILLAIILFKQQSAFADLLQKIRQNPPLVLVILLLALNTGVQLWLFLWAPNHGQALQVS
                     FGYLLLPIVAVALGKMVFKEHFTRLKWLSLLFAVIGVGSSLFFNSTISWATWVAGLGY
                     PLYITLRRYFQINTLATFFVELLLVLPVALYYLSQVEMTPIVAENPQIYFYLGLLGLV
                     SGSAFILYILSSNLLPINVLGLLGYVEPLVMLLISFAIGEKLDANSYILMVCLLVSIG
                     LLSWDSFRSKV"
     gene            complement(4848..5366)
                     /locus_tag="PXC99_000811"
     CDS             complement(4848..5366)
                     /locus_tag="PXC99_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lhr family helicase"
                     /protein_id="HDL5417286.1"
                     /translation="MILLRGDTMQFIEFTDPDSGISYQYSEFTIANVAFIINFCSDAD
                     VISTLSALGKDITNYINTYSCCTIKFMAKEHLENSGSNIDIYAPAANHQFKRKEIIAL
                     QETLERLLFEHYVRFTPESYLFIAERDSLNRMYQRMCVPRCDFMQSFQVVYPLGVNQD
                     CFILITPKGNLK"
     gene            complement(5533..7197)
                     /locus_tag="PXC99_000812"
     CDS             complement(5533..7197)
                     /locus_tag="PXC99_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HDL5417287.1"
                     /translation="MNISFVFPQTLGNARRFLVNEMLSAAAKQQGHNVVAANQADFVV
                     LFDNAIPQEAAGKQGAILDLEQAFAQPEASLKQAVENAQTFANATATTAVSAVSSGVK
                     NIVAVTACPTGVAHTFMSAEAIENYAKAQGWNIKVETRGQVGAGNPISAEEVAAADLV
                     FVAADIDVDLEKFKGKPMYRTSTGLALKKTTQEFEKAFAQAKIYEGGVAKADNAEAPT
                     SEKKGLYKHLMTGVSHMLPLVVAGGLLIAISFMFGIEAFKDETIAGGLPKALMDIGGG
                     AAFHLMIAVFAGYVAFSIADRPGLAVGLIGGMLATTAGAGILGGIVAGFLAGYTVKFL
                     NGAIQLPASLTSLKPILILPLLGSAIVGLLMIYVINPPVKALMDALVEWLNTMGQTNA
                     IILGIILGAMMCTDMGGPVNKAAYTFGVGLIASQQYMPMAAVMAAGMVPPIGMAIATL
                     IARSKFNTNQRDAGKASFVLGLCFISEGALPFVAADPVRVIASSILGGATAGAISMAL
                     GITLQAPHGGLFVIPFVSQPLMYLAAIAIGSLVTGVVYAAIKQKAE"
     gene            complement(7223..8167)
                     /gene="fruK"
                     /locus_tag="PXC99_000813"
     CDS             complement(7223..8167)
                     /gene="fruK"
                     /locus_tag="PXC99_000813"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HDL5417288.1"
                     /translation="MRIATVTLNPAFDLVGKLQRIEIGEVNTVETLGLYPAGKGINVA
                     KVLADLGTKLSVTGFLGEENQGDFVNAFKHNDLADEFYRINGKTRINVKITETEADVT
                     DLNFLGFEISESDWEKFVTLSHQWESKFDLVAVCGSLPRGVTPEKFASWLESLHRQGL
                     KVVLDTSNAALTAGLTAHPWLVKPNRRELEVLVGHSLNSIEEIISAAKQLRSRGIENV
                     IISMGEQGSLWLNHEGVLQARPPRCENVVSTVGAGDSMVASLIYGLSQGWSKEQTLRF
                     ASATSALAVVQSNVGIADRAALDDIIKQTDITVISENH"
     gene            complement(8181..9659)
                     /gene="fruB"
                     /locus_tag="PXC99_000814"
     CDS             complement(8181..9659)
                     /gene="fruB"
                     /locus_tag="PXC99_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused PTS fructose transporter subunit IIA/HPr
                     protein"
                     /protein_id="HDL5417289.1"
                     /translation="MLNLSAKNIRLNGSASNKEEVIRFVAAELVAKGNVAAGYEVGML
                     NRETQTSTFLGNGIAIPHGTLDTRDLVKETGVQIIQLPQGVEWGEGNTAYVVIGIAAK
                     SDEHLTLLRQLTTVLSDEEAAATLAKTQNLDEFIAVLSGKKNLPALSQELISLNIESS
                     SPITLSAINAAKLQEQGYVSQAFISDVVANKALHLGNNLFVVDSAKGNQANGIAIARN
                     TQGQTLLTVAETDNALQPLLTQLLKPEVRSQFAHFSAEQMLGLLKGESVASTPVTNVE
                     ASGNQVVGTFTIRNDNGLHARPAAVLVQTVKPFSSKISVENLDRNTAPASAKSAMKVV
                     ALGASQGHRLRFVAEGEDAQQAIEALQQAIINGLGESVSFVPAVADTIESIAVSAIPA
                     EETATAVDANTKEATFVIKNEHGLHARPSAVLVNEVKKFNAKIEVQNVDKNSPLVSAK
                     SLMKIVALGVTKGTTLRFVASGDDAEVALAAIGAAIEAGLGE"
     gene            9947..12169
                     /gene="glgB"
                     /locus_tag="PXC99_000815"
     CDS             9947..12169
                     /gene="glgB"
                     /locus_tag="PXC99_000815"
                     /EC_number="2.4.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching protein GlgB"
                     /protein_id="HDL5417290.1"
                     /translation="MQDYTYSEKDAFFVERLSSGSCNDPFSYLGIHPSNNGVIIRVFL
                     PSAIACQVIDLNGKPVSSMLKIDDRGFFIAELIGKKTDFSYRLLVEYPDSTVDIEDPY
                     RFKTHIQELDNWLFAEGKQLRPYEKLGAHLVTQNEVGGVHFSVWAPNAQRVSVVGDFN
                     HWNGLVHSMRFHPDSGIWDIFLPNVKKGECYKFEVLDRNGVLRLKSDPYAFASQFRPE
                     TASIVSGLPSIVPAEKTCRNANAPDKPISIYEVHLGSWRRNIENNYWLSYEELADELI
                     PYVKDMGFTHIELLPISEFPFDGSWGYQTTGIYSPTSRFGTPEGLSYFIQKAHDKGIG
                     VILDWVVGHFPVDEHGLVYFDGTHLYEHSDPKEGYHKDWNTLIFSYGRNEVSNYLSGN
                     ALYWIERFGIDALRVDAVASMIYRDYSRSDGEWIPNKYGGRENLEAIDFLRHTNNILR
                     DESQGGASIAEESTSFAGVSHSTERGGLGFNYKWNMGWMNDTLRYMQKDPIYRRYHHN
                     LMTFGMTYQYSEQFVLPLSHDEVVHGKGSLLNKMPGDCWQKFANLRAYYGYMWGYPGK
                     KLLFMGNEFAQGKEWNFAESLDWYLLGEEGGEWHKGVLGWVKALNHLYTQTPALFEQD
                     YNPEGFEWLVVDDHDNSVFAFERKAKNGDSVIVVSNFTPIVRENYRFGVNELAEYQEI
                     LNSDLACYCGSNVSNANRFASELIASHGKAYSLSITLPPLSTIFLKRAADKKTKQNKT
                     "
     gene            12193..14205
                     /gene="glgX"
                     /locus_tag="PXC99_000816"
     CDS             12193..14205
                     /gene="glgX"
                     /locus_tag="PXC99_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching protein GlgX"
                     /protein_id="HDL5417291.1"
                     /translation="MHYFRGKPFPLGNKLDRQAGEFGTNFAIVSQNATAIELCLFDEN
                     HHETRIPMFSSGDTWHIFVAGVQAGTKYGYRVKGIQDEQAGLLFNPQKLLTDPYAKAI
                     EGKPDLSSAEAAAWYKWNDERDNASLAPKSIVIDEHFDWENDSQLFTPWAETIIYEMQ
                     VKGFSQRNFQIPSDIRGTFAGLAHPVSIDYLKTLGITAVELLPVTYHIDETHLQKQGL
                     VNYWGYNVLGNFAIDPNLAADKQNPLKEFKQLVKTLHQAHIEVIMDIVFNHTAESDKN
                     GPMLSFRGIDNTAYWLDKQGEYENWTGCGNTLNLSNPYILCWAIDCLIYWVEECHIDG
                     FRFDLASILGRTPSFSEKADFFTALKSHSKLTHIKLIAEPWDIGVEGYQLGQFPEPFY
                     QWNDCYRDDIRRFWLQNQGDWGLLARRLAGSDDVFTKYSVSKSINFITAHDGFTLQDL
                     TSYQQKHNWANGEQNRDGHNSNYSNNHGVEGQTADELVKKQREITACSLLATLFLSAG
                     VPMLLAGDEIGHSQQGNNNSYCQDNEITWLDWENMNHTRLDYVRSLIRLRKKIALLSK
                     QNNWWQEDSVQWLNPSAQLMNIDDWHNQHNGLVVLLQEEWLLLFNANRQPQPFLLPQG
                     NWKVVLEQAQGILMTDTQAVTLNNMGVCVLQKSDVMFANKLETQYA"
     gene            14198..15511
                     /gene="glgC"
                     /locus_tag="PXC99_000817"
     CDS             14198..15511
                     /gene="glgC"
                     /locus_tag="PXC99_000817"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HDL5417292.1"
                     /translation="MLNQESTALVARQDLTNDTLVLILAGGRGSRLYELTDKRAKPAV
                     YFGGSRRIIDFALSNCINSNLLKIGVITQYAAHSLLRHLQRGWSFLPYERNQYIDMLP
                     ARQQLDENTWYRGTADAVYQNMAMMKSHYRPKYVVILAGDHIYKMDYTQMLKDHVDQG
                     AKCTVGCIEVPRSQATEFGVMAVNEKLKVKEFVEKPADPPAMPGKPDSSLASMGIYVF
                     NADYLYEMLEKEASTPGTSHDFGKDIIPKAVEQGVLYAHPFERSCKGRNASGAIYWRD
                     VGTIDSYWAAHMDLVSEDPELDLYDESWPIHGRPQQTAPARFFYNRARARTLDNSLIA
                     GGCVITDAEISNSVLFNRVHVEAESVIEHTVILPQVTIGKNCVIKRAVIDRHCVIPDG
                     LEIGVNAEEDAKRFRVSKNGIVLVTQSMLDKLAGKEANSDIKYTI"
     gene            15634..17070
                     /gene="glgA"
                     /locus_tag="PXC99_000818"
     CDS             15634..17070
                     /gene="glgA"
                     /locus_tag="PXC99_000818"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase GlgA"
                     /protein_id="HDL5417293.1"
                     /translation="MKVLHICSEMYPLIKTGGLADVMGALPFAQQQAGNDVRVLIPYY
                     PKVAQTLGETVEVATIGTFAGTVSVRFAYFNGLGVYVIDAPHLFMRDGNPYHDSNYQD
                     YPDNYKRFALLGYIGAQLAQGLDHWWGTAQVLHAHDWQAGLACAYLKSWGSNVKTLFT
                     IHNIAYIGRFNAFHLAELGLPWEFFHAEGLEFYGEISYLKAGLYFADRITTVSPTYAR
                     EITEEIAGAGLHGLLATRQYQGRLRGILNGVDAEVWNPETDTHIVVNYRANYMHGKAK
                     NKAELQRIFGLPEDKEALLMVMVTRLTEQKGADFLLANIDTLMQHKVQIIVLGSGSPD
                     LENALRYFQHKYPNQIGVKIGYDEALSHQIIAGGDLILVPSRFEPCGLTQLYGLKYGT
                     LPLVRRTGGLADTVVDSHKESIENRSATGFVFDYPDAPAFLEAAMRAISLWQKQKLWS
                     SVRQNALAQDFGWAKVAEQYQNLYHEII"
     gene            17165..19665
                     /locus_tag="PXC99_000819"
                     /pseudo
     CDS             17165..19665
                     /locus_tag="PXC99_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651737.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen/starch/alpha-glucan phosphorylase"
     gene            complement(19752..20468)
                     /gene="trmJ"
                     /locus_tag="PXC99_000820"
     CDS             complement(19752..20468)
                     /gene="trmJ"
                     /locus_tag="PXC99_000820"
                     /EC_number="2.1.1.200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ"
                     /protein_id="HDL5417294.1"
                     /translation="MQILNQIQIILVETSLPANIGSAARAMKTMGLTHLRLVAPKQPL
                     DEQAEALAAGAKDVLDNAQCYATFDEAIADCQLVIGTSARLRHLQNTLIEPRDCGELV
                     VNRTNLGKVAIVFGRERVGLTNEELLKCQYHLNFPTNPDYGSLNLAMAVQLASYEIRM
                     AYLQNSGEKQPLAADKDYPTAQALEHFFAHTERLYTELGFIRNDSVMLKLRRLYQRAE
                     LETNELNLLRGMLTAVEKAN"
     gene            20648..22186
                     /gene="pntA"
                     /locus_tag="PXC99_000821"
     CDS             20648..22186
                     /gene="pntA"
                     /locus_tag="PXC99_000821"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HDL5417295.1"
                     /translation="MLIGVPRELLDGETRVAATPKTVEQIKKLGFDVLVEQDAGFKAS
                     FEDNTFLNAGANIGTQQEVWNADIIFKVNAPTEAEIELIKEGVTLVSFIWPAQNPQLM
                     EKLQSKKINVLAMDAVPRISRAQALDALSSMANISGYRAVIEAANAFGSFFTGQITAA
                     GKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDSRPEVKEQVKSMGADFLEIDFEE
                     EGGSGDGYAKVMSEEFNRRAMALYAEQAKEVDIIITTAAIPGKPAPRLITKEMVDSMK
                     PGSVIVDLAAATGGNCEYTKAGEIVVTDNQVKVIGYTDFPARLPTQSSQLYGTNLVNL
                     LKLLAPNKDGQIEINFDDVVLRGVTVVRDGELTWPAPPIQVSAQLQKQAAAPQAVKKE
                     EKPADPRVKYGVMAAAGVLFLWLASVAPAAFLSHFTVFVLACVVGYYVVWNVSHALHT
                     PLMAVTNAISGIIIVGAVLQIAQPTGNFFIDILAFIAILVASINIFGGFKVTQRMLAM
                     FRKG"
     gene            22201..23646
                     /gene="pntB"
                     /locus_tag="PXC99_000822"
     CDS             22201..23646
                     /gene="pntB"
                     /locus_tag="PXC99_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit beta"
                     /protein_id="HDL5417296.1"
                     /translation="MSFGFVTAAYIIAAILFIMSLAGLSKHETAKAGCWYGIVGMAIA
                     LVATIFGPQSHGTIWILIAMAIGGFIGVKKALKVEMTEMPELVAILHSFVGLAAVLVG
                     FNSYGLHTNALMPANLDETAQAAFLAEQATLANIHNVEVFLGIFIGAVTFSGSLVAFG
                     KLSGKLFGRKVSSAALNIPHKHKWNLAAIIVSVFLMIVFLNNPHNIFPVLIMTIIALV
                     FGWHLVSSIGGADMPVVVSMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYI
                     MCKAMNRSFISVIAGGFGNEVQSGKGDEEYGEHRETKAEEVAEMLKNASSVIITPGYG
                     MAVAQAQYPVAEITAKLREKGVNVRFGIHPVAGRLPGHMNVLLAEAKVPYDVVLEMDE
                     INDDFEETDVVLVIGANDTVNPAALDDPSSPIAGMPVLEVWKAQNVIVFKRSMAVGYA
                     GVQNPLFFKENTQMLFGDAKERVDDILRALN"
     gene            complement(23713..24639)
                     /locus_tag="PXC99_000823"
     CDS             complement(23713..24639)
                     /locus_tag="PXC99_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5417297.1"
                     /translation="MKPIFLEIRHLRTLIALKESGSVSLAAKRVHLTQSALSHQIKLL
                     EEQYDLTLFERKSSPIRFTPAGERLIKLAYDILPKVIEAELDLARVKQGEVGEVRVAV
                     ECHTCFDWLMPAMDTFRQHWPLVELDIVSGFHTDTVGLLLSHRADLAIVAEEEDSAGI
                     IYKPLFSYEMVAICSKDHPLATKDVWEAEDFKDETLITYPVPDDMLDLLRKILGPAGI
                     KVTRRNSELTIAIIQLVASRRGIAALPYWAVKPYLDRGYVVARKITQQGLYSTLYGAI
                     READATLAYLDDFHDTVKSQSFATLPGLMVLE"
     gene            complement(24749..25864)
                     /gene="asd"
                     /locus_tag="PXC99_000824"
     CDS             complement(24749..25864)
                     /gene="asd"
                     /locus_tag="PXC99_000824"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HDL5417298.1"
                     /translation="MQNVGFIGWRGMVGSVLMDRMVEENNFANINPVFFTTSQAGQKA
                     PVFGGKDAGELKNAFDIEELKKLDIIVTCQGGDYTNEVYPKLKETGWNGYWIDAASAL
                     RMKDDAIIVLDPVNQHVISEGLKNGIKTFVGGNCTVSLMLMAIGGLFEKDLVEWVSVA
                     TYQAASGAGAKNMRELLSQMGELEDSVKAELANPASSILDIERKVTAKMRAEDFPTEN
                     FGAALGGSLIPWIDKLLPETGQTKEEWKGYAETNKILGLSDNPIPVDGLCVRIGALRC
                     HSQAFTIKLKKDIPLAEIEQIIAAHNEWVKVIPNDKETTLRELTPAKVTGTLSVPVGR
                     LRKLAMGGEYLAAFTVGDQLLWGAAEPVRRILVQLTQ"
BASE COUNT         7327 a         5150 c         5783 g         7644 t
ORIGIN      
        1 ctgtttaagt aacaagcggt aagattttta gaattttttg caaattcaag gtaaaatcaa
       61 cccgcttagt tcattactat ttcatataag agaaaataaa tgcgtttatt aattactttt
      121 tttgccctat tactcggctt tttccaatat agcttttggt ttggaaaaaa tggttggagt
      181 gattatcaag aagtgcaaga agaaattgct ttattaaaag tagaaaacac aaagcttact
      241 tcacgcaata aactaattga agccgaaatt tacgatttaa agaacggcgt agatgcactt
      301 gaagagagag caagacttga acgagaaatg gtaaaagaga acgagatgtt ctaccgaatt
      361 gtaccaaaaa acaaataata cataattgat atattatgaa gcgaaaaatt attgcagtaa
      421 ttccggcgtc aggagttggt agccggatgc aagcagaaaa accaaaacaa tatttacaat
      481 taaagggtaa gactatctta gagcatacag tgtctatttt tcttgaacac cctcatgttg
      541 aaaaagtgat tgtagcggtg gcaagaaaag acccttttta ttccacattg gaactcctaa
      601 aatcccctaa gatccaactt gtttttggag gagaaacgag agcagattca gtgctaaatg
      661 ccttacagga aatcaacact gaaaatgctt gggcattagt tcacgatgcg gctcgccctt
      721 gcctcaagcg gtcagattta gataaacttt tgcaaattaa cgatccgcaa ggtggcattc
      781 tcgccattcc agcggtagat acgatgaaaa gagcaaacgg cacgaaaatc gcacacacag
      841 aagatcgctc aaccttatgg cacgctttaa ccccacaatt ttttcctgct caagcattaa
      901 aacaagcatt atcctctgct tttgccaata agcttcaggt aacagacgaa gcatctgcaa
      961 tggagcttgc aggctaccag ccacaattgg tttcaggtag aagtgataat atcaaaatca
     1021 ctcgccctga agatttagcc ttagcggaat tttaccttac acataatttg gagaactaaa
     1081 atgatacgta ttggacacgg ttttgatgtt cacgcttttg gcgaagatag accactgatg
     1141 attgctgggg ttgaagtgcc ttatcataca ggcttcattg cgcatagtga cggagatgta
     1201 gcgctgcacg ctttaacaga tgcgttgctt ggcgcagcag ctttaggtga tattggcaaa
     1261 ttattccctg atactgatat gcaatacaaa aatgccgata gtcgtggttt gttgattgaa
     1321 gcttaccgac aagtgcaaga acagggctat caagtcggta acgtcgatgt aaccattatt
     1381 gctcaagctc cgaagatgcg accgcatatt gataaaatga gacaggtgat cgcagacgat
     1441 ctacaatgcg atatatcaca agtgaatgta aaagccacta caacagaaaa attagggttt
     1501 accgggcgag gtgaaggcat agcttgtgaa gccgtagcat tgttactaaa aagggcatag
     1561 cttagagaag tgaggaagcg gtcttatttt cattagcgtt ttgtgcgttt agcgaaaaat
     1621 acgcaatttt tttgagaaat atgaccgctt gtattgtttt aaattgggcg gaaactacca
     1681 gcttcctcca gcgcctccac cgcctgatga accaccaccg aagctgtcgc cactgcctct
     1741 gcttccgcca aaaccaccac cgaagcctcc gccaaatcca cctgagcctc gatcaaagcc
     1801 acctccgaga ccaccgccaa agcccccacc tctgcgttgg ctttctctta gtatttgtcc
     1861 tagttgatcc attgagctgg gactaatata ggtactgttt cctcgtgggc ggaaaattag
     1921 gaaaatcaca atgccggcaa acaagaaaaa gagtaagccg tctatgtcat caaattcttg
     1981 catttcttcg ccataacttg cataaggggc atattccccg ttaatggctg ccataatggc
     2041 ggataagcca tgggcgatac cggctgcata ttgctcttgt ttgaagaatg gcgtgatgtc
     2101 attgcggata atgctcgatg caatcgcatc aggtaacgct ccttcaagcc cacgtccggt
     2161 ggcaataaag agtttgcgat cattttttgg caattaataa caatatacca ttgttctcgt
     2221 tatttttgct ccgtccgatt ccccatttgt taaacagggt atgagcatag gttgaaactg
     2281 cctcgccttc cgtgcttgga ataatcacca cggcaatttg cgaacttgtc ttggcacagt
     2341 tagcaattaa ggcatcttct aatgtccgcc attcttgttg gctcaaggtg tttttggtgt
     2401 agtccgtaat ataataaaac ggattaggcg gctctgggta ggtcaccgct gtggcattta
     2461 ggctaaacag agccaagcac accaataaca agcggttgaa aatagataga aatttgcaaa
     2521 gggatttcat catttgacta ccacctcgtt tgaaagctcg tttttatcat cagcctgata
     2581 agggaaatgg tgagcgagcg gagcttccac cattttgatt gcatcacaaa tggcttgggt
     2641 gtaatcgcct tgttggcagt ccaaacacat tgtggcatag attttttgcc aaaaatcgtt
     2701 atcgactttt tgatgaatgc cttcatcgcc aataatcgca gcgtagtgag gcttgaatga
     2761 aaggtagatc aacacaccgt tatgttcagc cgtttcacgc atttttaatt catcgaaaag
     2821 ctcacttgct cgcaacatag cggcgttgtc ggttttgccg attttggctt ttcgttccac
     2881 caccacacgc aattcggcag aggttttttg ctctaaatcg gcaattgctt gttcaatgcg
     2941 ttgcgtatct atcggtaatt tgttggagag aaaagaaaat aatcccattt gttcccctta
     3001 aaaataaagc aataagcacc ggatttgaaa gagcttattg cttttaatat gaataaattg
     3061 aaactaaaat tagttgaagt ttacggttgg tgctttatca gaacctgctt cagatttaaa
     3121 ttgcggtttt gctttaaagc ccataatcat tgccgctaat ttagtcggga attcacgcac
     3181 ttgcttgttg tactctttca ctttttcgtt aaagttattg cgttcaacgt taatgcggtt
     3241 ttccgtacct tctaattgag cttgtagatt taaaaacgct tcgtgggctt ttaattcagg
     3301 gtatttctca actgaaacca ataagcgtga aagagcagag tttacacctt gttgggcttc
     3361 ttggaattta gccatttgct cttcagttgc attgcttggg tcaatggtta ccgcagttgc
     3421 ttttgcacga gcttcaatca cagaggttaa agtttctttc tcaaagttag cctgaccttt
     3481 tacggtattc actaagtttg gaattaaatc cgcacggcgt tggtaagccg attcaacatt
     3541 tccccatacg gagttgatgt cttcttctgc acgcattaaa tcgttgtatt ttgttaaaga
     3601 ataaccgcca acagcaagca tggcgatcag taaaatccaa aaaatctttt tcattatgaa
     3661 gtcctataat ataaataaaa gagtgaaaaa ttgggagcat tgtatcggga aaaatcgaat
     3721 atagctagct tacttacaaa ttttttcata ctatggggcg tagataagat ttgtaaattt
     3781 ttgttcaaag tcaaccgctt gttgtttgat tgttgataag aggaaagcca aatgctcaaa
     3841 ggaattttag cttcgcttgc agccaatgtg ctgtttggag cagtttacta ttttgcgata
     3901 ttgcttcgcc cgttagaggg agaggcgatg ttcggctttc ggatagtggt agtcattccg
     3961 tttattttgc tggcgattat attgtttaaa cagcaatcgg cttttgcgga tcttttgcaa
     4021 aaaattcgac aaaatccacc gcttgtattg gtcattttgc tccttgctct caacaccggc
     4081 gtgcagcttt ggctgttttt atgggctcct aatcacgggc aggcgttgca ggtgtcgttt
     4141 ggttacttgc ttttaccgat tgtggcggtg gctctaggaa aaatggtgtt taaagaacat
     4201 tttacccgcc tgaaatggct ttctctactt ttcgcagtca tcggtgttgg cagtagtttg
     4261 ttttttaaca gcacgatttc gtgggcgact tgggtagctg ggttgggtta tccgctttat
     4321 attacccttc gccgttattt tcaaatcaac acgttagcta ctttttttgt ggagttgtta
     4381 ctggtattac ccgttgcact ttattatctc agccaagtgg aaatgacgcc aatagtggca
     4441 gaaaatccgc aaatttattt ctacctcgga ttgctggggc tggtaagtgg cagtgctttt
     4501 attctttata tcctctcgag caatttatta ccgattaatg tattaggttt actgggctat
     4561 gttgaaccgt tggtgatgtt gctgatttct tttgccatcg gcgaaaaact cgatgccaat
     4621 tcctatattt tgatggtctg tttgctggtt tcgattggat tattgagttg ggatagtttt
     4681 cgtagcaagg tgtgataatt aaggaaaaat aaatcgcttg tagagcaagc ggtttaaaga
     4741 ttatttgacc ggtttcaata gacctgcttt ttttgctcgc tgataggctt gcttaaaagc
     4801 gattaagcct tcttgcttta aacgaacgga aactggacgt tgttgattca ttttagattt
     4861 ccttttggcg taattaaaat gaaacaatct tgattaacgc ccaagggata aaccacttgg
     4921 aaagattgca taaaatcaca tcgtggcaca cacatacgct gatacattcg gttaagtgaa
     4981 tctctctcgg caatgaagag atagctttct ggtgtaaaac gtacataatg ctcaaataat
     5041 aaacgctcaa gggtttcttg taaagcaatt atttctttac gtttgaactg atgattcgct
     5101 gcgggggcat aaatgtcaat attagaaccg ctattttcta gatgctcttt cgccataaat
     5161 ttgattgtgc aacaggaata ggtgtttata tagtttgtga tatctttgcc taatgcggac
     5221 aaagtcgata taacatcggc atctgagcag aaattaatga taaatgcgac attagcaata
     5281 gtaaattcac tgtattgata agaaattcca ctatcaggat cggtaaattc aataaactgc
     5341 atagtatctc ctcgtagcaa aatcataacg agttgatatt attcgtaaag tgatgaaaat
     5401 gattttttcg atctcgatcg caaaaataat attttagact tgatatttcg atgaaataga
     5461 attcagtaag taccaatatg atataaaaac ggagcgtttc gctccgtttt tgtttgtatt
     5521 tgtgtttgtg ctttattctg ctttttgttt gatagcggca tagactacgc cggtgactaa
     5581 tgagccgatg gcaatagcag ctaagtacat taacggttgt gaaacgaatg gaatcacgaa
     5641 taaaccgccg tgtggggctt gtagggtaat gcctagtgcc attgaaattg caccggcggt
     5701 tgcaccgcct aagattgagc tggcaattac acgcacaggg tctgccgcca cgaacggtaa
     5761 tgccccttct gaaataaagc ataaacctaa cacgaatgaa gctttacctg catcacgttg
     5821 gttggtgttg aatttgctac gagcaatcag ggtcgcaatc gccataccaa ttggtggaac
     5881 catacctgcc gccatcaccg ctgccattgg catatattgt tgtgaagcaa ttaaacccac
     5941 accaaaggta taagccgctt tattcaccgg accacccata tcggtacaca tcatcgcacc
     6001 gagaataata cctaaaataa ttgcattggt ttgccccatt gtgtttaacc attccactaa
     6061 ggcatccatt aatgctttca ccggtgggtt gatgacataa atcatcagta agccgacaat
     6121 cgctgagcct aagagtggta aaatcaaaat aggtttaagt gaggttaaac ttgccggtag
     6181 ctgaatcgca ccatttaaga attttacggt ataaccggct aagaaaccgg ctacgatacc
     6241 acctaaaatc cctgctcctg cggtggtagc aagcataccg ccgataagac cgacagctaa
     6301 ccccggacgg tctgcaattg agaacgctac atagcctgcg aataccgcaa tcattaagtg
     6361 gaatgccgca ccgccaccaa tatccattaa ggctttcggc aagccgcctg cgatggtttc
     6421 atctttaaag gcttcaattc cgaacataaa ggaaatagcg atgagcaagc cacctgctac
     6481 caccagcggt aacatatgtg atacaccggt catcaagtgt ttatataacc cttttttctc
     6541 agaagttgga gcttcagcat tatccgcttt tgccacacca ccttcgtaaa ttttcgcttg
     6601 agcaaaggct ttttcaaatt cttgagtggt tttcttcaat gctaaaccgg ttgaggtgcg
     6661 atacatcggc ttgcctttga atttttccaa atcgacatca atatcggcag ctacaaagac
     6721 taaatctgcc gctgcgactt cttcggcgga aattggattt cctgctccta cttgaccacg
     6781 ggtttcaacc ttgatgttcc aaccctgtgc tttggcataa ttttcgattg cttccgcaga
     6841 cataaaagta tgagccacgc cagttgggca agcggtaaca gcaacgatat ttttcacacc
     6901 agatgaaacc gctgaaaccg cagtggttgc ggtagcattt gcaaaagttt gtgcattttc
     6961 gaccgcttgt ttgagactgg cttcaggttg agcaaaggct tgttctaagt ccaaaattgc
     7021 cccttgcttg ccggcagctt cttgtggaat tgcgttatcg aataacacca caaaatcagc
     7081 ttggtttgcc gccacaacat tgtgtccttg ttgcttggca gcggcagata acatttcatt
     7141 cactaagaaa cggcgtgcgt tgcctagtgt ttgaggaaat acaaaagaaa tattcatatt
     7201 ggtttgttcc tttgattgag gtttaatgat tttctgaaat cacggtaatg tcggtttgtt
     7261 taataatatc gtctaacgcc gcacggtctg caatcccaac gttactttga acaacagcta
     7321 gagcagaagt agctgaggca aaacgcaagg tctgctcttt gctccaacct tgagataagc
     7381 cgtagatcaa gctggcaacc attgaatcac cagcacctac agtgctaact acattttcgc
     7441 aacgtggtgg gcgggcttgt aacacgcctt cgtgatttag ccaaagagag ccttgttcgc
     7501 ccattgatat aattacattt tcaataccac gggaacgtaa ttgtttagct gcactaataa
     7561 tctcttcgat tgagttgagt gaatgcccga ccagcacttc cagctctcgg cggtttggtt
     7621 ttactaacca agggtgagcg gttaagccgg cggtgagagc cgcattgctg gtatctaaca
     7681 ccacttttaa gccttggcgg tgtaaagatt ccaaccaaga agcaaatttt tccggcgtta
     7741 cgccacgagg gagagatcca cacactgcaa ctaagtcaaa tttgctttcc cactgatgag
     7801 ataatgtgac gaatttttcc caatcgcttt ccgaaatttc aaagccgaga aagttcagat
     7861 cagttacatc agcctcggtt tcagtgattt tgacattaat gcgggtttta ccgttaatac
     7921 ggtaaaattc atcagccaaa tcattgtgtt taaaggcatt tacgaaatcg ccttgatttt
     7981 cttcgcctaa aaagccggta accgaaagtt ttgtgcctaa gtcagctaaa actttagcaa
     8041 cgttaatacc tttgccggca gggtataaac caagggtttc tacggtgttc acttcgccga
     8101 tttcaatacg ttgaagtttg ccgactaaat caaaggcagg gttgagggta acggttgcaa
     8161 tacgcataat gattcctcgc ttattcgcct aaacctgctt caatcgcagc accgattgcc
     8221 gcaagtgcta cttcggcatc atcaccgctt gccacaaagc gtagcgtcgt gcctttggtt
     8281 acgccaaggg caacaatttt cattaagctt ttggcactta caagcggtga atttttatca
     8341 acattttgca cttcaatttt ggcgttgaat tttttcactt cattcaccaa caccgcactt
     8401 gggcgagcgt gtaaaccgtg ttcgttttta attacaaaag ttgcttcttt cgtattggca
     8461 tcgacagcag tcgcagtttc ttccgcagga attgctgaaa cagcaatgct ttcaatcgta
     8521 tctgccaccg ccggtacgaa tgaaacactt tcgcctaagc cgttaataat tgcttgttgt
     8581 aatgcctcaa tcgcttgttg ggcgtcttct ccctctgcca caaagcgtaa acgatgccct
     8641 tggcttgccc ctagtgctac tactttcatt gcacttttcg cacttgccgg tgcagtgttg
     8701 cggtctaaat tttcaacgct gatttttgag gagaacggtt tcaccgtttg tactaacacc
     8761 gcagccgggc gggcgtgtaa gccgttgtcg ttacgaatgg tgaatgtgcc aaccacttgg
     8821 ttgccactcg cttcgacatt ggttacaggg gttgaagcta cgctttcgcc ttttaataaa
     8881 ccaagcattt gctccgcaga gaaatgagca aactggcttc ttacttctgg ttttaataat
     8941 tgagttaata gtggctgtag agcattgtcg gtttctgcca cagttagtag ggtttgacct
     9001 tgcgtattac gggcaatagc gataccgtta gcttggttgc ctttggcgga atccaccaca
     9061 aatagattat tgcctaaatg taacgctttg ttggcaacca catcgctgat gaatgcttgg
     9121 gaaacatagc cttgctcttg tagttttgcg gcgttaatgg ctgataaagt gatagggctt
     9181 gaagattcga tattcagaga aatcagctct tgagataagg caggaaggtt tttcttaccg
     9241 cttaatacgg caataaattc atctaaattt tgcgttttcg ctaatgtggc agcagcctct
     9301 tcatcactta atacagtggt gagttgacgg agtaaggtta agtgttcgtc cgatttagcc
     9361 gcaatcccga taactacata agcagtgttg ccttcgcccc attccacgcc ttgcggaagt
     9421 tggataattt gcacgccggt ttctttgact aaatcacggg tatcaagcgt gccgtgggga
     9481 atagcaattc cgttacctaa aaaagtagag gtttgggttt cacgattaag cataccgact
     9541 tcatagccgg ctgctacatt gcccttggcg actaattcgg cggcaacaaa acggataact
     9601 tcttctttgt tgcttgctga accatttaaa cggatgtttt ttgccgataa attaagcatt
     9661 ttagctcctt ggatttaaag ttgattttta aactgtaatg ttatggttag tttactctat
     9721 attttgctaa accgttatag ccaactaaaa atatccataa aaatgtttca aaatgtgatc
     9781 tatgtcacaa aatttaaggt ttgatgattt aaactaaaga ttaaaacgat tttattttgt
     9841 gatttagctc aaaaaatggc gtaaatccac ttcttttatt tctatttagt gatagagtga
     9901 gaactattga aatttaagta ttaaacgctt taagcaagga gtgccgatgc aagactatac
     9961 ttattctgaa aaagatgctt tttttgttga gcgactttct tcgggttctt gtaatgatcc
    10021 tttctcctac ctaggtattc accctagcaa taacggcgtt attattaggg tatttcttcc
    10081 ttctgccata gcttgccaag tgatcgattt aaacggaaag cctgtgtcat caatgctaaa
    10141 aattgatgat agaggctttt ttattgcaga gctgattggt aaaaaaacag atttttctta
    10201 ccgcttgttg gtggaatacc ctgattcaac ggtggatata gaagaccctt accgttttaa
    10261 aacccatatt caagagcttg ataattggtt gtttgcggaa ggaaaacaac ttcgcccgta
    10321 cgaaaaatta ggcgcacatt tagtcacaca aaatgaagtt gggggtgtgc attttagcgt
    10381 ctgggcgccg aacgctcagc gggtttccgt ggttggggat ttcaaccact ggaacggctt
    10441 ggtacattca atgcgattcc accccgattc cggtatttgg gatattttcc tgccgaatgt
    10501 gaaaaaaggg gagtgctata aatttgaagt gttggatcga aacggcgtgc tacggttgaa
    10561 atccgaccct tacgcctttg cctcccaatt ccgcccagaa accgcatcta ttgtttccgg
    10621 cttgccaagc attgtgccag ccgagaaaac ctgccgtaat gcgaatgctc ccgataaacc
    10681 gatttccatt tatgaagtgc atttaggctc ttggcgacgc aacattgaaa acaattattg
    10741 gcttagctat gaagagcttg ccgatgaact cattccttat gtgaaagata tgggctttac
    10801 ccatattgaa ttgctgccta tttccgaatt tccgtttgat ggctcttggg gttatcaaac
    10861 caccggtatt tattcgccaa ccagccgttt tggtacgcct gagggcttga gttactttat
    10921 ccaaaaagct cacgataaag gcattggtgt gattcttgac tgggtagtgg ggcattttcc
    10981 ggtagatgaa cacggcttgg tttattttga tggaacgcat ttatacgaac attccgatcc
    11041 gaaagagggc taccacaaag attggaatac cttaattttt agctacggca gaaatgaggt
    11101 gagcaattat ttgtctggta atgcacttta ttggattgag cgttttggga ttgatgcgtt
    11161 gcgggtggat gcggtggcgt caatgattta tcgtgattac tcacgttcag acggcgagtg
    11221 gattccaaat aaatatggcg gacgtgagaa cttagaggca atcgacttct tacgccacac
    11281 caataatatt ttgagagacg aaagccaagg cggtgcgagc attgcagagg agtccacttc
    11341 ttttgccgga gtgtctcact caactgaaag aggcggtttg ggctttaatt ataaatggaa
    11401 tatgggctgg atgaacgaca ctttacgcta tatgcaaaaa gatccaattt accgccgtta
    11461 tcaccacaat ttaatgactt ttggtatgac ctaccaatac agcgaacagt ttgtgttacc
    11521 gctttcacac gatgaagttg ttcacggcaa aggttcattg ctgaataaaa tgccggggga
    11581 ttgctggcaa aaatttgcga acttacgagc ctattatggc tatatgtggg gctatccggg
    11641 caaaaaattg ctctttatgg gcaacgagtt tgctcaaggt aaagagtgga attttgccga
    11701 gagcttagat tggtatttac tcggggaaga agggggcgaa tggcataagg gcgtattggg
    11761 ttgggtaaaa gcccttaacc atttatacac ccaaacccct gcactgtttg agcaagatta
    11821 caatcctgaa ggttttgagt ggttagtggt ggacgatcac gataattcgg tgtttgcttt
    11881 tgagcgtaaa gccaaaaatg gcgattcggt gattgtggtg agtaatttca ccccgattgt
    11941 gcgtgaaaat taccgttttg gggtgaatga attggcagaa tatcaggaaa ttctcaattc
    12001 tgatttagct tgttattgcg gtagtaatgt cagcaatgca aaccgatttg ccagcgagtt
    12061 aattgcatcg cacggtaaag cctactcctt gagcattact ttgccaccgc tatcgactat
    12121 cttcctcaaa agagccgcag acaaaaaaac aaaacaaaac aaaacataac ttaaagaaac
    12181 ataaaaaata atatgcacta ttttagaggt aagccttttc ctttaggcaa taaacttgat
    12241 agacaagcgg gtgaatttgg cacaaatttt gccattgttt cgcaaaatgc aaccgctatt
    12301 gagttatgtc tttttgatga aaatcaccac gaaacccgta ttccgatgtt ttcttccgga
    12361 gatacttggc acatttttgt agcaggtgta caagcaggga caaaatatgg ctacagggtg
    12421 aaaggcatac aagatgaaca agccggtttg ttatttaatc cgcaaaaatt attgactgat
    12481 ccttacgcta aagcgattga agggaagccg gatttaagta gtgcagaggc agccgcttgg
    12541 tataaatgga acgatgaacg ggataatgcc tctcttgcac ctaagtctat cgtgattgat
    12601 gagcattttg attgggaaaa tgatagccag ttattcactc cttgggcaga gactattatt
    12661 tatgaaatgc aggtgaaagg ttttagtcag cggaactttc agattccaag cgacattcga
    12721 ggcacttttg ccggtttggc tcaccctgtt tcgatagact atttaaaaac cttaggaatc
    12781 accgcagtag aacttctacc cgttacttac catattgatg aaacccattt gcagaaacaa
    12841 gggcttgtga attattgggg ctataatgta ttaggtaatt ttgctattga tccgaattta
    12901 gcagcagata agcaaaatcc tcttaaagag tttaaacagc tcgtaaaaac attacatcaa
    12961 gcacatatcg aagtgattat ggatattgtg tttaaccaca cagctgagag tgataaaaac
    13021 gggccgatgc taagttttag aggcattgac aatacagctt attggctaga taaacagggc
    13081 gaatacgaaa attggactgg ctgtggtaat accttaaatt tgagcaatcc ttatatactc
    13141 tgctgggcaa tcgattgctt aatctattgg gtggaggagt gccatattga tggattccgc
    13201 tttgatcttg cctcaattct aggtagaaca ccgagttttt ctgaaaaagc agattttttc
    13261 acagcactta aaagccattc taaattaaca catattaagt tgattgctga gccttgggat
    13321 attggtgtag aaggttatca attagggcaa ttccctgagc ctttttatca gtggaatgat
    13381 tgttatcgtg atgatatacg ccgtttttgg ttacaaaacc aaggtgattg ggggcttttg
    13441 gcacggcgat tggcaggaag tgatgatgtg tttactaaat attccgtttc aaaaagtatc
    13501 aattttatta cggcacacga tgggtttacg ttacaagatc tcaccagcta tcagcaaaaa
    13561 cataattggg caaatggtga acaaaaccga gacgggcata atagtaacta cagcaataac
    13621 cacggtgttg aagggcagac agcagatgaa ttggtaaaaa aacagagaga aatcaccgct
    13681 tgtagtttgc ttgctacgct ctttttatcg gctggtgttc caatgctttt agccggtgat
    13741 gaaatcggac atagtcaaca aggtaacaat aatagttatt gccaagataa tgagatcact
    13801 tggctagatt gggaaaatat gaatcacaca cggctggatt atgttcgtag tttaatccgg
    13861 ttgcgtaaaa aaatcgcttt gctttccaag cagaataatt ggtggcaaga ggattcggta
    13921 caatggttga atccttctgc tcagctaatg aatattgacg attggcataa tcaacataat
    13981 gggcttgtcg ttttattaca ggaagaatgg ctgcttttat tcaatgctaa tcgacaacct
    14041 caaccgtttt tactgccaca aggcaactgg aaagttgtgt tggagcaggc tcaaggtatt
    14101 ttgatgacag acacgcaagc ggttacgctc aataatatgg gtgtatgcgt acttcaaaaa
    14161 agtgatgtaa tgttcgctaa taaattggag acacaatatg cttaaccaag aatcaacggc
    14221 tcttgttgca agacaagatt taaccaacga taccttagta ttaattcttg caggaggacg
    14281 aggttctcgc ctatacgaat taaccgataa acgtgcaaaa ccggcagtct atttcggtgg
    14341 tagccgccgt attattgatt ttgcgttatc aaattgtatt aactcgaatt tattaaaaat
    14401 cggggtgatt acccaatatg cagcacactc tttgttgcgc catttacaac gtggttggtc
    14461 atttttacct tatgaacgta accaatatat tgatatgtta ccggcacgcc aacagctaga
    14521 tgaaaacact tggtatcgtg gcacagcgga tgcggtgtat caaaatatgg cgatgatgaa
    14581 atcgcactat agaccaaaat atgtggtgat tttagcaggg gatcatatct ataaaatgga
    14641 ctacactcaa atgctgaaag atcacgtcga tcaaggtgca aaatgtactg taggttgtat
    14701 cgaagtgcct cgctcgcaag caacagagtt tggggtaatg gcggtgaatg aaaagctgaa
    14761 agtgaaagag ttcgtcgaaa aaccagctga tccacctgca atgccgggaa aaccggattc
    14821 ctcgctagca tcaatgggga tttatgtatt taatgcagat tatctatatg aaatgctgga
    14881 aaaagaagcc tctacaccgg gaacctcaca tgatttcggt aaagatatta ttccaaaagc
    14941 agtagagcaa ggtgtgctat atgcccaccc atttgaacgt tcttgtaaag ggcgtaatgc
    15001 cagtggggca atttactggc gagatgtcgg tacgattgac agctactggg ctgcccatat
    15061 ggatttagtt tctgaagatc cggaattaga tttatatgat gaatcttggc cgattcacgg
    15121 tcgtccgcaa caaactgcac cggcacgttt tttctataat cgtgcgcgtg ccagaaccct
    15181 agataactca ctgattgcgg gtggttgtgt gattaccgat gcggaaatca gtaattcggt
    15241 cttatttaac cgtgttcacg ttgaagcgga gtcggtgatt gaacacacag tgattttacc
    15301 gcaggtgact atcggtaaaa attgcgtaat taagcgcgct gtgattgaca gacattgtgt
    15361 aattcctgat ggcttagaaa ttggtgtaaa tgccgaagaa gatgcgaaac gttttcgtgt
    15421 cagcaaaaat ggcattgtat tagtgacaca gtcaatgtta gataaattag cgggaaaaga
    15481 agctaattcg gatattaaat atacaattta gtaagagatg atataatgct tcgagtttgt
    15541 catttgaggt cgcaagctcg aagtattgtt atgattaaag cgcttcaagc ggtcttattt
    15601 ttcaactatt ttacacatag aaaacggtta aaaatgaaag ttttacatat ttgctctgaa
    15661 atgtaccctt taattaaaac aggcggttta gctgatgtaa tgggggcatt gccatttgcg
    15721 caacagcaag ctggtaatga tgtcagagtg ttaattcctt attacccgaa agtcgcgcaa
    15781 actttagggg aaacggtaga agttgctact atcggcactt ttgccggaac agtctctgtt
    15841 cgatttgctt attttaatgg cttaggcgtt tacgttatcg atgcgcctca tttatttatg
    15901 cgtgatggta acccttacca cgacagcaat tatcaagact atccggataa ctataaacgc
    15961 tttgctttat taggttacat tggggcgcaa ttagcccaag gtttggatca ttggtgggga
    16021 accgctcaag ttttacacgc acacgattgg caagcagggc ttgcttgtgc atatcttaaa
    16081 agttggggaa gcaatgtaaa aacgctcttc actattcata atattgccta tatcgggcgc
    16141 tttaatgcct tccatttagc agagcttggc ttaccttggg aatttttcca cgccgaaggc
    16201 ttagaatttt acggtgaaat ttcttacctc aaagcaggtt tgtattttgc tgatcgcatt
    16261 actaccgtta gcccgaccta tgctcgtgaa attactgagg aaattgccgg tgcaggcttg
    16321 catggtttac tggcaacccg tcaatatcaa ggtagattgc gtggcatttt aaacggggtc
    16381 gatgctgagg tgtggaatcc ggaaacggat acacatattg tggtgaatta tcgtgcgaac
    16441 tatatgcacg gtaaagccaa aaataaagcg gaactccaac gaatttttgg tttgccagaa
    16501 gacaaagaag cattattgat ggtaatggtg actcgtttaa ctgagcagaa gggggcagat
    16561 ttcttactcg ccaatataga taccttaatg caacataagg tacagattat tgtattggga
    16621 agtggatcgc cagatttaga aaatgcgcta cgttatttcc aacacaaata cccgaaccaa
    16681 attggggtga aaatcggtta tgacgaggct ttatcgcacc aaattattgc aggtggtgat
    16741 ctgattctag taccaagccg ttttgagccg tgcggattaa ctcaacttta tgggctgaaa
    16801 tatggcactt taccgctggt tcgccgtacc ggtggcttag ctgatacggt ggtagatagc
    16861 cataaagaga gcattgaaaa ccgcagtgcc accggatttg tatttgatta cccagatgca
    16921 cctgcgtttt tagaggcagc tatgcgggca atcagcttat ggcagaaaca aaaattgtgg
    16981 tcgagcgttc gccagaatgc ccttgctcaa gattttggtt gggcaaaagt ggcagaacag
    17041 taccaaaatt tataccacga aattatttaa tttgtattca caacatcatt tcaagcggtc
    17101 gaatttgcgg atttttttgt aaaaacgacc gcttgcaata ttaaaaatta ggagaattta
    17161 ctcaatgagc aggcagtcat taagcccaga aatgatcaaa aatgttaaaa atgcgatttt
    17221 gcacaaaatg gtgttcgctt taggggtcga accccgtgat gccagtaagc gtaactggct
    17281 caatgcaacc ttacgtgtag tgcgtgattt atctaccgaa gattggttac aaacccgccg
    17341 tagccaggtt gcaaatggta gccgccgtgt ttattacctt tcaatggaat ttttaatggg
    17401 gcgtacgttc agtaacgcaa tgatttctga aggtgtgtat gagcttattg gcgctgcgtt
    17461 aaaagagtta gggcaagatc tggaagagat tatcaatgaa gagggcgtcc gggcttaggt
    17521 aacggtggct tagggcgttt agccgcctgc tatatggaca gccttgccac aatgaaaatt
    17581 ccggcaatcg gctacggtat tcaatatgaa tacggtatgt tccgccaaga aatccgcaac
    17641 ggggagcaaa ttgagcaacc tgatgaatgg ttagagaatg aatttgtgtg gccatatcta
    17701 cgttcaagta agcgtttccc ggtacgcttt ggcggtaaaa cttggcgtga gggcaaaaaa
    17761 gtagtatggc agccggaaga agaaattacc gctcaagctc acgaccaact gatcccgggc
    17821 tttgagacca cctcaactaa cagcttacgt ttatggtctg cacacgcatc gggtagaggg
    17881 tttggcttat ctgattttaa ccgtggcgat tattttgcag caatggttaa acaaaacagc
    17941 tcggaaaacg tctctcgtgt gctttatccg gacgattcta cctataacgg tcgtgaatta
    18001 cgcttacgcc aagagtattt cctttgctcg gcatctgtac aagatattat ccgccgccac
    18061 gaagcggagt tcggctcttg tgtgaattta gccgacaaag tggcaactca cttaaatgac
    18121 acacacccaa cccttgcggt gcctgagtta atgcgtattt taattgacga aaaaggctat
    18181 ggctgggaac aagcgtgggc gatgactcgt aaaattttct tctacaccaa tcacactttg
    18241 atgagtgaag cgttagaaac ttggccggta gaaatgttag cccgtgtgct accacgccat
    18301 ttagagatta ttttcgacat taacgaatat ttcttagagg aagtgcgtag ccaattcccg
    18361 gaagatcacg atttgatttc tcgtgtttcc ttaattgatg aacaaggcga tcgccgtgtg
    18421 cgtatggcgt ggcttgcggt agtcgcctca gcgaaagtaa atggtgtggc gaaaattcac
    18481 tcggatttaa tggttgaatc tatttttgcc gattttgccc gtatttaccc aaatcgtttt
    18541 actaatgtga ctaatggggt gacacctcgc cgctggatca aaattgccaa cccagggctt
    18601 gctaatattt tagataaatg tatcggcaat aagtggctga ctgatttaag tgaattggaa
    18661 aaattcaacg tgtttgttga tgatgctgat gtgcaagcac aggtggcagc ggtgaaagta
    18721 gaaaacaaac gtcgcttagc caaatatgtc gaagaaactc agggaattaa acttaatcct
    18781 gaagcgattt ttgatgtaca agttaagcgt attcacaagt ataaacgcca gcaaatgaac
    18841 gtgttgcata tcatcacgct ttataaccgc atcttgaaaa acccgactgc tgattggaca
    18901 cctcgtgtgt ttatcttcgc agggaaagcg gcaagtgctt attatgcggc gaaaaaagtg
    18961 attcgtttga ttaatgatgt ggcaaatgtg gtgaataatg accctcgcat taatgattta
    19021 attaaggtgg tgtttattcc gaactacggt gtttcattag cacaaatgat tattccggca
    19081 gctgatgttt cagagcaaat ttccttagcg ggtacagagg cctccggaac ctctaatatg
    19141 aaatttgccc tcaatggtgc tttaaccatt ggtacattag acggtgcgaa tgtcgaaatt
    19201 ttagatcacg ttggtaaaga gaacatcttt attttcggta atgaagtaga gcaggtggaa
    19261 gagcttcgcc acaacggtta ctcaccgtat cactactacg aaaaagacag cgaattgaat
    19321 gaggcaattt cacaaattct aaacggtaaa ttctcaccgg aagatccgta tcgctatcaa
    19381 gatttgatct taaattcagg tgactactac caagcctgtg ccgattatcg tagctatgtg
    19441 gaggctcaag aaaaagtggc tcaagcctat cgtaacaaga aagcttggac acgttcagcc
    19501 atcatcaata ttgccaatat gggctatttc tcctcagacc gctcggtgat ggattatgcg
    19561 aaaaatattt ggcatatcga accgatgagc gaagaacaat taaaaggcga ttctacaatg
    19621 ggcagtatta ttgaaagttc aaataaactg ttgaatttaa aataatgatt tagagaaaac
    19681 ggtaagagta atcttaccgt ttttgtttta gtcagggatt ttgcaaattt ctactaaaaa
    19741 ttaaccgctt gtcaatttgc cttctccacc gccgtgagca ttcccctcag taaattcagc
    19801 tcattagttt ccagttcggc acgttggtat aaacggcgga gttttagcat cactgaatca
    19861 ttgcggataa agcctaattc ggtatataag cgttcggtgt gagcaaagaa atgctctaag
    19921 gcttgagcgg ttgggtaatc cttatctgct gcaagcggtt gtttttcgcc agaattttgc
    19981 aaataagcca ttcggatttc ataacttgcg agctgtactg ccattgccaa attcagagaa
    20041 ccataatcag gattggttgg gaaattcaaa tggtactggc atttcaataa ttcttcgttg
    20101 gttagcccca ctcgctcacg tccaaataca atcgccactt tgccaagatt ggttcgattt
    20161 accactaatt caccacagtc tcttggttca atcagggtat tttgcaaatg gcgaagtctg
    20221 gcactggtgc cgatcaccag ttggcaatcg gcaatggctt catcgaaagt ggcgtagcat
    20281 tgagcgttat ccaacacatc ttttgcccca gcagcaaggg cttcggcttg ttcatcaagc
    20341 ggttgttttg gggcgactaa tcgcaaatgg gttaagccca tcgttttcat tgctcgggct
    20401 gcggaaccga tatttgccgg gagtgaagtt tcaacaagaa tgatctgaat ttggttgaga
    20461 atctgcattg gttttgtttc ttttttgtta aatttagcct gttaatagtg tagcaaaaat
    20521 ttagcctgct taaaatttga aaaaatggga aataatcggt ttaattgggc ataatttttt
    20581 acctatttgt tttatttagt ggtacattta gagcgttttt aatcacaaca accatacagg
    20641 agtctttatg cttattggtg taccaagaga gctgttagac ggtgaaactc gagtggcggc
    20701 aacgccaaaa accgttgagc agatcaaaaa acttggcttt gacgtacttg tggaacaaga
    20761 cgcaggtttt aaagccagtt ttgaagataa tacattttta aatgcaggtg caaatatcgg
    20821 cacacaacaa gaagtttgga atgcagacat tatttttaaa gtgaatgcgc cgacagaagc
    20881 tgaaattgag ttaatcaaag aaggggtaac cttagtcagc tttatttggc cggcacaaaa
    20941 tccacaattg atggaaaaat tgcagtctaa gaaaattaat gtgttggcaa tggacgctgt
    21001 gcctcgtatt tcccgtgccc aagctctcga tgctttaagt tcgatggcaa atatttcggg
    21061 ttaccgtgcg gtgatcgaag cggcaaacgc ttttggtagc ttctttactg ggcaaattac
    21121 cgcagcaggt aaagtaccac cggcaaaagt gttggtaatt ggagccggtg ttgctggctt
    21181 ggctgcaatc ggggcggcaa atagcctggg ggcgattgtg cgtgcctttg actctcgtcc
    21241 tgaagtaaaa gagcaagtta aatcaatggg ggctgatttc ctcgaaattg attttgaaga
    21301 agaaggtggc tcaggtgacg gctatgcgaa agtgatgtcg gaagagttta accgtcgtgc
    21361 aatggcgtta tatgccgagc aagccaaaga ggtggatatt attattacca ccgctgccat
    21421 tccgggcaaa cctgctcctc gtttaatcac taaagagatg gttgattcaa tgaaaccggg
    21481 ttcagtgatt gttgatttag ccgctgcaac cggtggtaac tgtgaataca ccaaagccgg
    21541 cgagattgtg gtgaccgata atcaagtgaa agtgattggc tataccgatt ttcctgcacg
    21601 tttaccaacg caatcttcgc aactttatgg tactaacttg gtgaatttac tcaaactgtt
    21661 agcaccaaat aaagatggtc aaattgagat taattttgat gatgtagtgt tgcgtggcgt
    21721 aacggtggtg cgtgacggcg aattaacttg gccggctccg ccgattcaag tatctgccca
    21781 actgcaaaaa caagcagccg caccacaagc ggtcaaaaaa gaggaaaaac ctgcagaccc
    21841 tcgagtgaaa tatggcgtga tggcagcagc aggtgtgctg ttcctatggc ttgcatctgt
    21901 ggctccggca gcgtttttat cgcattttac cgtattcgtt ctcgcttgtg tggtagggta
    21961 ttatgtggtt tggaacgtca gccacgcact acatacccca ttaatggcgg taacaaatgc
    22021 gatttcaggg attatcatcg taggtgcggt attacaaatt gcccaaccga ccggtaattt
    22081 ctttattgat attttggcat ttattgcgat tttggttgcc agcatcaata tttttggtgg
    22141 ctttaaagta acgcaacgta tgcttgcaat gtttagaaaa ggttaaggag aaacgaaact
    22201 atgtcttttg gatttgtgac tgctgcgtac attattgcag ctattctctt tattatgagc
    22261 ttagccggtc tttctaaaca cgaaaccgcc aaagcaggtt gttggtatgg gattgtgggt
    22321 atggcgattg ctttagtggc aaccattttc ggcccgcaat cacatggcac gatttggatc
    22381 ttaatcgcaa tggcaatcgg tggattcatc ggggtgaaaa aagccctaaa agtagaaatg
    22441 accgaaatgc ctgaattagt ggcaattcta cacagctttg tcggtttagc agcggtattg
    22501 gttggtttta acagctacgg acttcatacc aatgcattaa tgcctgcaaa tttagatgaa
    22561 actgcacaag cggcattttt agcggaacaa gccactcttg ccaatatcca caatgtggaa
    22621 gtgttcttag gtattttcat tggtgcggta accttctccg gttcattggt tgcctttggt
    22681 aaactaagcg gtaaattatt tggtcgtaaa gtctcttctg cagcactgaa tattccacat
    22741 aaacacaaat ggaatttggc agccattatc gtttctgttt ttttgatgat cgtgttttta
    22801 aataatccgc acaatatctt ccctgtgctg attatgacaa ttattgcgtt agtcttcggc
    22861 tggcacttag tttcttctat tggtggggcg gatatgccgg tggtagtttc aatgctgaat
    22921 tcttattcag gttgggcagc cgcagcggca ggctttatgc taagcaacga tttattaatc
    22981 gtaaccggtg cattagtggg atcatcaggt gctatccttt cttatattat gtgtaaagca
    23041 atgaaccgct cattcattag cgtgattgcc ggtggttttg gcaatgaagt tcagtctggc
    23101 aaaggtgatg aagaatacgg tgaacaccgt gaaacgaaag ccgaagaagt ggcagaaatg
    23161 ctgaaaaatg caagctctgt gatcatcacg ccgggttatg gtatggcagt ggctcaagca
    23221 caatatccgg tagcggaaat caccgcaaaa ttgcgtgaaa aaggcgtgaa tgtgcgtttt
    23281 ggtattcacc ctgtggcagg gcgtttaccg gggcatatga acgtattatt ggcggaagcg
    23341 aaagtacctt atgatgtagt gctggagatg gacgaaatca atgacgattt tgaagaaacc
    23401 gatgtggtat tggtaatcgg tgcaaacgat accgtaaacc ctgctgcatt agacgaccca
    23461 tcaagcccta ttgctggaat gccggtgctt gaagtatgga aagcacaaaa tgttatcgtg
    23521 ttcaaacgtt caatggcagt aggctacgcc ggtgtgcaaa acccactgtt ctttaaagaa
    23581 aatacccaaa tgctatttgg tgatgcaaaa gaacgtgttg atgatatttt acgggcgtta
    23641 aattaaattt aaataaaaaa gcgaacataa gttcgctttt ttgtgcttag gctaacataa
    23701 attgttaatt ttttactcta ataccatcaa tccgggaaga gtcgcaaaac tctgcgattt
    23761 tacggtatca tggaaatcat ctaagtaggc tagggtagca tcggcttctc gaatagcgcc
    23821 ataaagggtg ctatatagtc cttgctgagt tatttttctt gccaccacat accccctatc
    23881 taaatatggt ttaaccgccc aataaggtag tgcagcaatg cctcgccgac ttgctactag
    23941 ctgaataata gcaatagtta actcactatt acgccgagta actttgatgc cagcagggcc
    24001 taatattttt cgcagtaaat ctagcatatc atcaggtact ggataggtaa ttaatgtctc
    24061 atctttaaaa tcttcagctt cccatacatc ttttgtggca agagggtgat ctttagagca
    24121 aatagctacc atttcatatg aaaagagagg tttgtatata ataccagcac tatcttcctc
    24181 ttcagcgaca attgccagat ctgcacgatg gcttaatagc aaaccaaccg tatcagtatg
    24241 gaaacccgat acgatatcta attcaactag aggccaatgt tgacggaaag tatccattgc
    24301 cggcattagc caatcaaaac aggtatggca ttctactgca acacgtacct ctccgacttc
    24361 tccttgtttc actcgggcta aatctaattc agcctcaatg actttgggca aaatatcgta
    24421 ggccaactta attaaacgtt cgccagctgg tgtaaagcga ataggggagc tttttcgctc
    24481 aaatagcgta agatcatact gttcttccag taattttatt tggtgtgaaa gtgcggattg
    24541 tgttaaatgg acacgctttg ctgcaagaga tacgctaccg ctctctttta atgcgattaa
    24601 tgtccgcaaa tggcggattt caagaaaaat cggtttcata atttattcat ctaaaagtga
    24661 aaaaagatga aaataattat aacaaacaag cggtcaaatt ctgcaaaaaa tttgcaaaat
    24721 ccaaccgctt gtatagagca gtggcgaatt attgggttaa ttgaactaaa atgcggcgaa
    24781 caggctctgc tgcaccccat aataattggt cacctacggt aaatgcagct aagtattctc
    24841 cacccatcgc taatttacgc aagcgaccaa ccggcacgct caatgtaccg gtcactttcg
    24901 ccggggtcaa ttcacgcaat gtggtttctt tgtcgtttgg aattactttc acccattcat
    24961 tgtgggcagc aataatttgc tcgatttccg ctaacggaat atcttttttc agcttaattg
    25021 tgaatgcttg gctgtggcag cgtaatgctc caatacgcac gcataaacca tcaactggaa
    25081 ttgggttatc gcttaaacct aaaattttat tagtttctgc ataacctttc cactcttctt
    25141 tagtttgccc ggtttccggt aataatttat caatccaagg aattaagcta ccgcccaatg
    25201 ccgcaccgaa gttctcggtt gggaagtctt ccgcacgcat tttagccgta actttacgtt
    25261 caatatctaa aatagaagag gcaggatttg ctaattcagc ttttacgcta tcttctaatt
    25321 cacccatttg agaaagcaat tcacgcatat ttttcgcacc ggcaccggaa gcggcttggt
    25381 aagttgctac agaaacccac tcgactaaat ctttctcaaa taaaccaccg atagccatta
    25441 gcattaggct tacggtacag tttccgccta caaatgtttt aatgccgttt tttaagcctt
    25501 ctgaaatcac atgttggttc accgggtcta atacgataat agcatcgtct ttcatacgta
    25561 atgcagaagc cgcgtcaatc caatagccgt tccaaccggt ttcttttaat tttggataga
    25621 cttcatttgt ataatcacca ccttggcaag ttacgataat gtctaatttt tttaattctt
    25681 caatgtcaaa ggcgtttttt aattcgccgg catcttttcc gccaaaaaca ggggcttttt
    25741 gacccgcttg tgaagtagtg aaaaaaacag ggttgatatt ggcgaagtta ttttcttcaa
    25801 ccatacgatc cattaagacc gaaccgacca taccacgcca accgataaaa cctacatttt
    25861 gcattgtgtt tgctcctaaa aatgatgtta taaagattgt gaat
//
LOCUS       DANLVT010000023        24957 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.023, whole genome shotgun sequence.
ACCESSION   DANLVT010000023 DANLVT010000000
VERSION     DANLVT010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 24957)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24957)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24957
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.023"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(91..654)
                     /locus_tag="PXC99_000825"
     CDS             complement(91..654)
                     /locus_tag="PXC99_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5358 domain-containing protein"
                     /protein_id="HDL5417299.1"
                     /translation="MLRKIVLLSTGLLLAACSSNEPQQPEAFPGEFANADYVLSEENA
                     QKWVIASEQAKQCIYPNLTRIQQEHFSKEDSYIFSQYVFFYPLEEIIGEQYVKIIQND
                     EKSMGYAQYLFKKLKNNEAVEALPKKQCATLRTNAKNDLAVVKGQYQSGMIEETNSQE
                     GKSGDKVATNDNKFFFDIIKWGSMLLL"
     gene            804..3401
                     /gene="mutS"
                     /locus_tag="PXC99_000826"
     CDS             804..3401
                     /gene="mutS"
                     /locus_tag="PXC99_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HDL5417300.1"
                     /translation="MTQDFSTHTPMMQQYLQLKAQNPDILLFYRMGDFYELFYDDAKR
                     AAALLDISLTKRGQSAGEPIPMAGVPYHAVEGYLAKLVALGESVAICEQIGDPATSKG
                     PVERKVVRIVTPGTVSDEALLPERQDNLVAAVYEEKGTFAIATLDMTSGRFLISELAS
                     KEALSAELQRVQPAEILYAEDFSAASILTNYKGLRRRPVWEFELVTAIQLLNRQFGTQ
                     TLAGFGVEKAVVALCAAGCVLHYAQETQRTALPHINAIHLAQHSDTILLDAATRRNLE
                     LTQNLAGGTENTLAAVLDKCVTPMGSRLLKRWIHQPIRDCGKLQARQKAITALIQYER
                     MSDLQPLLQQVGDMERILARVALRTARPRDLTRLRTALAQLPEIAKNSQNLTASIDQL
                     LAQLADFSPLHDLLERAIIENPPQLIRDGGVIAEGYNAELDEWRQLSDGATQYLENLE
                     IRERESTGIDSLKIGFNAVHGYYIQISQGQAHKAPIHYVRRQTLKNAERYIIPELKTY
                     EDKVLKAKGASLALEKQLYDELFDVLMPRLGELQLAAMMLSELDVLTNLAERADSLGY
                     VCPSFSPMRMVNIKGGRHPVVEQVLTEPFIANPVFLNSQRHLLIVTGPNMGGKSTYMR
                     QIALITLMAYIGSFVPAESAEIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQ
                     ATENSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKTQSLTLFATHYFELTGLPNQLKG
                     VANVHLDAREHQDSIVFMHSVQEGAASKSYGLAVAALAGVPKQVIQLAKQRLAHLEEI
                     SHQTKQANEHPQADLLFSDGFDLQKNEAIQPLVVENEVEKALKALQPDELTPRQALDE
                     LYRLKKLLG"
     gene            complement(3449..4903)
                     /locus_tag="PXC99_000827"
     CDS             complement(3449..4903)
                     /locus_tag="PXC99_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5417301.1"
                     /translation="MKKIVSTLLILTSNLAFAETTPAQLQEKMDNQRMQKNLHTLEKP
                     EPQAKPQAVNAQAHRQSISISSQQLLQQPELLNSAMLTALVTNHTENVQFLLPIYQQL
                     PASKQNSEVVQWAEAVNAKAKQNYSEAIKGYRQLLAKYPENQPIRMQLAVALFENREN
                     EAAEAQFYKLQADKLPQEIANAVNSYLEAIGKQDQWSFQGGLTYLNDPNINNAPNAGT
                     TYGNWTAPKKESAQGVGFHFEADKKWSWGNGFFHEFRLNGNGKYYWNNKKYNEYSLRE
                     SLGLGYQNAKQKITLLPFFEQMWYAGGSSQTESTKRYSNAGGVNARWQYWITPQWQSA
                     ISYEYAEQRYTRRQHLDGNYHFIAPSLYFYPNSRQYWFVGANFNRTSPRDLDDSFIRR
                     GVSIGWGQEWKNGLSTQLSASYARKQYRAPMPIFQITQRNSEYGVQASIWHRALHFKG
                     ITPRLTWQYNKVKSNHSFYSYDKNRVYIEFSHTF"
     gene            complement(5127..5765)
                     /locus_tag="PXC99_000828"
     CDS             complement(5127..5765)
                     /locus_tag="PXC99_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HDL5417302.1"
                     /translation="MRYTTEQIIEKLRQLKVVPVIALDKAEDILPLAKTLSENGLPVV
                     EITFRSEAAEEAIKLVQANYPEVLIAAGTVLTKEQVLTAKNAGADCIVTPGFNPTIVK
                     YCQVLGLPVTPGVNNPMAIEAALELGIQAVKFFPAEASGGVKMIKALLGPYGNLQIMP
                     TGGISPQNINDYLAIPNVVACGGSWFVEKSLIKEQKWEEIGKLTKEVVELVK"
     gene            complement(5853..6800)
                     /locus_tag="PXC99_000829"
     CDS             complement(5853..6800)
                     /locus_tag="PXC99_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HDL5417303.1"
                     /translation="MKKLAILGECMIELNGEPFGEMHQTYGGDSLNTATYLARVSSPE
                     QIEVRYISALGTDKLSQGMLAAWQVDNINTDFVLRDEHRQPGLYLIQLDKQGERTFLY
                     WRNQSAARYLLQHPGYPKALSALNEVDMVYLSGISLAILPENDRTLLIAQLRELKTQG
                     VKIAFDSNYRPKLWESVAAAQAHYAELLQLVDLALVTFDDEQLLWGDVNEQATFDRLT
                     QYGIQTIVVKQGSLGATVLQNGERTFVPTVAVEKVVDTTSAGDSFNAGFLNGYLLGKD
                     VVTCCQQGNAVAGIVIQHKGAIIAKSATTHLKSQFEQSI"
     gene            complement(6817..7662)
                     /locus_tag="PXC99_000830"
     CDS             complement(6817..7662)
                     /locus_tag="PXC99_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL5417304.1"
                     /translation="MSIAQNHNFKDKVVVITGAGGVLCAYFAKEIAKTGAKVALLDIN
                     LEAAQNFASEIADEGYIAKAYQTNVLELESIKQARDEILKDFGTCDILINGAGGNNPK
                     ATTDNEFHDINLPENTKSFFELDKAGIEFVFNLNYLGTLLPTQVFAKDMLGKEGANII
                     NISSMNAFTPLTKIPAYSGAKSAISNFTQWLAVYFSKVGIRCNAIAPGFLVSNQNKAL
                     LFNADGTPTARANKILTNTPMGRFGQADELVGAILFLMDHHYSSFINGVVLPVDGGFS
                     AYSGV"
     gene            complement(7674..8945)
                     /locus_tag="PXC99_000831"
     CDS             complement(7674..8945)
                     /locus_tag="PXC99_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005668000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease"
                     /protein_id="HDL5417305.1"
                     /translation="MLWLFLGSLFLFLFLGVPVALSMLLSASFMLWKMDMFDAQLITE
                     NFVMGTNNFPLMAIPFFMLTGEIMKHGGISERIINFAMSMVGHIKGGLGYVVIISGLI
                     FAGLSGSAVADTAALGAILIPMMVARKYDVARSTGLICAAGIISVVIPPSIPMIVYGI
                     TAGASITKLFMGGMVPGFLMVLGLWLVWKFLYRNEEQTVEPKKTGKERWAAFKSAFLP
                     LLLPIIIIVGLRGGIFTPTEAGVVAAIYAAIISIILKGLTLDKIQDVFLGTIKTTAMV
                     MFVAAAAMISAFAVTVAQIPMELVEFIKGITDSPTVLMFVIMIFLLLVGCVMDLIPAV
                     LIFVPVLLPLLRAYNIDIAYFGIMMVINLSIGLITPPVGTVLYVGSGIAKIGIARLTK
                     GIYPFLLVYAAILFLLILFPEIIIVPMNWLS"
     gene            complement(8948..9427)
                     /locus_tag="PXC99_000832"
     CDS             complement(8948..9427)
                     /locus_tag="PXC99_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HDL5417306.1"
                     /translation="MQISTALDRTLKLLAIIALSTMIILVFFNAVLRYFFDSGIAWSE
                     EFARICFVYMIFLGIILVAKERGHLTVDIVVSALPAKVQMYLLFFADILVLVALSFIT
                     YGAYQLMLLTYTQKMPATEISSAFLYFAAVISSISYFAIVFTNLWKHIRLAFIKEEK"
     gene            complement(9488..10471)
                     /locus_tag="PXC99_000833"
     CDS             complement(9488..10471)
                     /locus_tag="PXC99_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL5417307.1"
                     /translation="MKLKTFTKALLISSLMFTGSAFAKTIIKIGHYNSDVHPSNIALQ
                     EYFKKTIEEKTEGRYEIRIFPNNQLGGEDQIVNGLRNGTIEGGITGLLLQNVDPIFGV
                     WEWPYLFKDNAEAKKVLESPIAQEIGEKMEKYGIKLLAYGMNGFRVISSNKKVENFDG
                     FKGLRLRVPLNSLFVDWAKAMHINPQSMPLSEVFTALEQKVIDGQENPYMLIKDSGLY
                     EVQKYIIESNHIFSPGLLQLSLKTWNKMSKEDQTIFLEAAKLYQEKEWELAMKMEQDV
                     KDFFHKNGKEVIVPSEQFKADMLKASETLYQNFYQKYDWAKDVISKIHAAK"
     gene            complement(10500..11525)
                     /locus_tag="PXC99_000834"
     CDS             complement(10500..11525)
                     /locus_tag="PXC99_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HDL5417308.1"
                     /translation="MEKPLKSVCLVEPNKVGIQTVSYPVKGENDVLIKVEGMGICGSD
                     IGAFRGTNPLVTYPRILGHEIVGTVIESGKGMPNNINVGDRVIIEPYIYCGHCYPCSI
                     GRTNCCESLKVLGVHIDGAMQEVVRHPAHMIIKTPDMPIHELALAEPLTISLHAIHRT
                     KVKAGEHVAIIGAGAIGLMAALVAKAYGATPILIDILDKRLDYAKSIGIPHTINPTKE
                     NDLEAIKSITNGRMAEVVIEASGANVAVQNTLKYTSFAGRIALTGWPKTETPLPTNLI
                     TFKELNIYGARTSKGAFEEALELLASRRIEPKDIISKVITFDEIPHYIEELSANPDDY
                     LKIIAVF"
     gene            11689..12450
                     /locus_tag="PXC99_000835"
     CDS             11689..12450
                     /locus_tag="PXC99_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FCD domain-containing protein"
                     /protein_id="HDL5417309.1"
                     /translation="MQNSSRTYTKIGKILKEEIAQGKYRVGDKLPTERDISERFEVSR
                     TIVREAIVMLEVEKLIEVKKGSGVYVIRVPELFPEDFPEEKDNELRDVGPFELLQARQ
                     LLESSIAEFAAQQATKQDIQVLRNILESEKKLLLEKMDDYSADKEFHLALAHMTGNDV
                     LIQLQEQLWRYRFNSAMWAQLHSRILQHDHHHLWIEDHERILNAIQRKNPALARKAMW
                     QHLENVKTKLLELSDVEDPKFDGYLFNVNPVVVGI"
     gene            12480..13664
                     /gene="uxuA"
                     /locus_tag="PXC99_000836"
     CDS             12480..13664
                     /gene="uxuA"
                     /locus_tag="PXC99_000836"
                     /EC_number="4.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannonate dehydratase"
                     /protein_id="HDL5417310.1"
                     /translation="MEQAWRWYGPNDPVSLDDVRQAGATGIVTALHHIPNGQVWSVEE
                     INKRKALLAEKGLVWSVVESVPVHEEIKTQTGNYQQWIDNYKQTLRNLASCGIDTVCY
                     NFMPVLDWTRTDLEYEMPDGSKALRFDQVAFAAFELYILKRPGAEATYSSAEQAEAKA
                     YFEQMSDADIAKLTKNIIAGLPGSEEGYTLEEFQAQLDRYQGLSAEKFRTHLAYFLNE
                     IVPVAQEVGIRMAIHPDDPPRPILGLPRIVSTIEDMQWFVETQPLAANGFTFCTGSYG
                     VLAENDLVKMAEQFADRIYFAHLRATQREENPQSFHEADHLAGDVDMFGVVKALLTEE
                     YRRKANGDHRLIPMRPDHGHQMLDDLKKKTNPGYSAIGRLRGLAEFRGLELALKKVYF
                     ND"
     gene            13715..14584
                     /locus_tag="PXC99_000837"
     CDS             13715..14584
                     /locus_tag="PXC99_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5417311.1"
                     /translation="MFKKYFGEIILFLVTFIAAAGWFFSKHALVGLPPIGFMGGRFIL
                     ASLILLPFSYRELYRLDKVQVKYSVITGLTYGIYTIFWVLGLAFSTVFGEGAFLVSLA
                     MLIAPLLSWLIFKHTPPKIFWLALPIALSGLYFLSAEKGIFHFSLGSTIFLVSSVFGA
                     LYFVLNNQYAKQVSLFPLITIQLAIVGAVCSLYSYFMESWHFPILTEVWLWFAASVLI
                     ATNLRFLMQTLGQKYCHIGTSALIMLLEPVWTLLLSVMLLGEQLSATKWLGCSLILIA
                     LIIYRLPILRLKK"
     gene            14752..15066
                     /gene="rsfS"
                     /locus_tag="PXC99_000838"
     CDS             14752..15066
                     /gene="rsfS"
                     /locus_tag="PXC99_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HDL5417312.1"
                     /translation="MEQNLVEFLTKTLDDLKAQDILAIDVKGKSSITDTMILATGTSS
                     RHVASTAERLITEAKQAGFEVFGDEGKAVADWIVVDFGKAMVHLLQSDSREMYQLEKL
                     WA"
     gene            15143..15610
                     /gene="rlmH"
                     /locus_tag="PXC99_000839"
     CDS             15143..15610
                     /gene="rlmH"
                     /locus_tag="PXC99_000839"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010618862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HDL5417313.1"
                     /translation="MKIQLIAVGTKMPAWVTTGFEEYQRRFPKEMPFELVEIPAGKRG
                     KNADTKRILELEGKAMLAAAGKAKIVTLDIPGKAWTTEQLATQLEGWKNDGRDVALLI
                     GGPEGLSPECKAAAEQSWSLSPLTLPHPLVRVVVAESLYRAWSVTINHPYHRE"
     gene            15634..17583
                     /gene="mrdA"
                     /locus_tag="PXC99_000840"
     CDS             15634..17583
                     /gene="mrdA"
                     /locus_tag="PXC99_000840"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HDL5417314.1"
                     /translation="MFGKLAKFTASNQREKVRDGQAESNLYARRALVAFLGVLALSGV
                     LLTNLYHLQVVNYEDYQTRSNGNRIKLLPVPPARGLIYDRNGKVLAENLTYFGLFIVP
                     EKTENIEQTLTELKDIVGLTDEDIENYHKEKKRSSRYTPIMLKGNLNEAQMARFAVNQ
                     YRFPSLDVQAYYKRNYPYGELLTHIIGYVAKINENDKKKLQEAGKFGNYAGSHDMGKL
                     GIEKFYEDQLHGVTGFEEVEINNRGKVIRKLRDQAGVAGSSIRLSIDVELQQYVMSLI
                     AKHKGAVVVLDPRDSSILAMVSNPSYDNNLFVGGISGQDYKALLDDPTRPLYSRTTQG
                     TYPPASTIKPFMAVAGLEEGMITPSTTISDPGYWILPGTTQRYRDWKRSGHGATNVNK
                     AITESSDTFFYQLAYKMGIDKMSDWMKKFGFGVKTGIDIFEESAGVMPTREWKQKRYK
                     KPWVQGDTIPVGIGQGYWISTPLQLAKATAVLINNGRVNTPHLMLEVQSSNSVTPYQD
                     PLLYEDIKGVPDVYWNLAKQGMYNVNHAANGTARKVFAGAFYHSAGKTGTAQVFNLNG
                     KNYDKNAIKKELHDHAWFIGYAPYEQPKIVVALILENAGGGGSAAAPVARQIMDYALR
                     KGIGEQPDSQNSEQNKPLVTEEHHE"
     gene            17576..18703
                     /gene="rodA"
                     /locus_tag="PXC99_000841"
     CDS             17576..18703
                     /gene="rodA"
                     /locus_tag="PXC99_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HDL5417315.1"
                     /translation="MNSGFKKLFWKIFSLDLLLLSGLLAITGYGLLVLYSASGANERM
                     FTSRLIQVSLGLGLMLIMAMVPPRFYQKVSPYLYIFCLILLILVDLVGETSKGAQRWL
                     NLGFVRFQPSEIAKLAVPLMVATYLGKRPLPPSFKDTFIALAIIIVPTLLVAIQPDLG
                     TSILVCSAGIFVLFLAGLSWKLIGAGVVFLAGFIPIMWFFLMHDYQKTRVMTLIDPNK
                     DPLGAGYHIIQSKIAIGSGGINGKGWMEGTQSQLEFLPEPHTDFIFAVLSEEHGMIGV
                     LILLAIYLFIIARGLVIGTKSDSAFGRILSGGTALLFFVYVFVNIGMVSGILPVVGVP
                     LPLFSYGGTSYVTLMAAFGLMMSTYVHRKRVGSNNPYDKLK"
     gene            18795..19454
                     /locus_tag="PXC99_000842"
     CDS             18795..19454
                     /locus_tag="PXC99_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HDL5417316.1"
                     /translation="MRLGKIVTLLLAGFLTFSSLNSLAATKNTKAKSSILAKKQATSK
                     AIKKVGISKVKKKEVVAKATKKKTISTVTTKPIKSTKKLARKVVKKTVTAKKKLVKKQ
                     HKPLVKKHFQTGVASYYANYFNGRRTANGETFNNAKMTAAHRTLPFGTLIEVTNLRNG
                     RSVVVRVNDRGPYAHARVLDLSSAAAKKIGMHHSGTARVKIAIVDKSKLGSTNQFYVM
                     N"
     gene            19468..20646
                     /locus_tag="PXC99_000843"
     CDS             19468..20646
                     /locus_tag="PXC99_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HDL5417317.1"
                     /translation="MKKTLVKAMSVVGFAVSSIAYADLNTNFNLSAPQINAQTYILMD
                     YNSGEVLVSLNPDQRQYPASLTKMMTSYVVGEALKSGKVQNSDMVIVTENSWAQKFPG
                     SSLMFLDLNSKVSVGELMKGLIIVSGNDASVALAEHVSGSQAAFINEMNKYAQQFGLK
                     NTHFTTVHGLDDPEQYSSARDMAIIGSHIIRDQPEEYKIYAEKEFQYNIKKPQPNRNG
                     LLWDKTIQVDGMKTGHTDKAGYNLVASAINPNTRLISVVMGVPTYKGREVESKKLLQW
                     GFANFETIKSIPAAQSVAEQSVYYGEVNKVQLGSVQDSFVTIPKGRSADLKARYELEK
                     KNLEAPLAKGQVVGKMIYQLDGKDVASTNLQVLQDVPEAGIFGKAWDWIALTVKSLFD
                     "
     gene            20814..21113
                     /locus_tag="PXC99_000844"
     CDS             20814..21113
                     /locus_tag="PXC99_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbeD family protein"
                     /protein_id="HDL5417318.1"
                     /translation="MSQPKAINLQDLPQAKLKDLLEFPCHFTFKVVGANREDLVDDVV
                     VVTQKYAKGDYNPRQQKSSKGTYNSVSIDIVAENIEQVETLYTELAKINGVRMVL"
     gene            21175..21828
                     /gene="lipB"
                     /locus_tag="PXC99_000845"
     CDS             21175..21828
                     /gene="lipB"
                     /locus_tag="PXC99_000845"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HDL5417319.1"
                     /translation="MKLIIRQLGIQPYEEIWHQMQSFTDSRDGNTDDEIWLVQHPAVF
                     TQGSAGKPEHLLNPTNIPVVQSDRGGQITYHGEGQQIMYVLIDIKRLKSLGKEVSVRD
                     LVTALEQTVVQTLAEYGIESYPKADAPGVYVDGKKICSLGLRIRKGCSFHGLALNINM
                     DLTPFQNINPCGYAGLEMCQLSELVHRPDLRCEEVAPKLVAHFSTILGYNNQQIINN"
     gene            21843..22850
                     /gene="lipA"
                     /locus_tag="PXC99_000846"
     CDS             21843..22850
                     /gene="lipA"
                     /locus_tag="PXC99_000846"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HDL5417320.1"
                     /translation="MATSTAQTTATATVKKMSPFKMEKGVKYRDAAKTSVIQVRNIDP
                     DQELLKKPEWMKIKLPANSAKIDSIKNGMRRHGLHSVCEEASCPNLHECFNHGTATFM
                     IMGAICTRRCPFCDVAHGKPLPLDPDEPRKVAETVQDMKLKYVVITSVDRDDLPDRGA
                     AHFSATVREIKALNPHCKVEILVPDFRGRVEQAVAILKENPPDVFNHNLENVPRLYRE
                     VRPGADYKWSLELLKIFKQEFPHIPTKSGLMVGLGETNEEILEVMQDLRDHGVTMLTI
                     GQYLQPSRHHLKVERYVPPAEFDMFREEAEKMGFEHAACGPFVRSSYHADLQAKGELV
                     K"
     gene            23037..24140
                     /locus_tag="PXC99_000847"
     CDS             23037..24140
                     /locus_tag="PXC99_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5417321.1"
                     /translation="MKKLLLNSVFAATLLAFGATANAEIKTITDVLGREVKVDVPAKR
                     VALTFYYPDYIAVTGVENFDKVVGISREFWEKFNPGSWALFAEKMPNLKNIADLGYVN
                     SGTFSTEKTIALKPDVLVLPEIQYQALASEISRIEQAGIPVVVDFNKQTIENHTKSVR
                     VFGQLTGTEERAEKIAKEYEEGIADIQSCIDNAKVSKPKIYAEFGNKGPKEHSFTFGK
                     NMWGAIAETVRGDNISAPFVENWGQINPEQVLVSKPDVIMISGTELGNDTNPEIMSMG
                     INIEEADAQKRLKGFIERTGWKELPAVKSGRVYGLYHTASRSISDLASAQFMAKALYP
                     ELFKDIDPEKTYLDFHNNYLPITPKGTFFMQLK"
     gene            complement(24231..>24957)
                     /locus_tag="PXC99_000848"
     CDS             complement(24231..>24957)
                     /locus_tag="PXC99_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL5417322.1"
                     /translation="SVVADKINLHFEQGKIYTLLGPNGAGKSSLLKTLFGEIAHQGTI
                     DFDGNKLTSSHLHSWRKEIGYMPQDTQVEASLSALEVILLGQLDSLNMYISDELLNEA
                     VDIMDKLGISHLAHQDIMRLSGGQRQMVMFAQVLLRKPHILLLDEPVSALDMYHQINL
                     LEYVNAYTRANNLITIMVLHDLSLAAQFSDSVMLLSEGKFKHKAELVICWNAILFRDS
                     IMSILRFYMMETARRLSARFANV"
BASE COUNT         7267 a         4896 c         5523 g         7271 t
ORIGIN      
        1 tgtattttaa gactgaggct ttagataaaa gttcaatcgg taggtataaa tggctcggtt
       61 gtggttaaaa caaccgagta ttgaggctca ctagagaagt aacatactgc cccatttgat
      121 aatatcgaag aagaatttat tatcattggt ggcaacttta tcgcctgatt tcccttcttg
      181 gctattggtt tcttcgatca taccgctttg atactgccct tttaccactg ccaaatcatt
      241 ttttgcattg gtgcgtaagg tcgcacattg ttttttcggt aacgcttcaa ccgcttcgtt
      301 atttttcagt tttttgaata aatattgagc gtaacccatt gatttttcat cattttgaat
      361 gatttttaca tactgctccc cgataatctc ttcaagcgga tagaaaaata catattgtga
      421 gaaaatataa gaatcttctt tggaaaaatg ctcttgctga atacgggtta aattggggta
      481 gatacactgt tttgcctgtt cgctggcaat tacccatttt tgagcatttt cttccgaaag
      541 cacataatcg gcattggcaa attcgcccgg gaatgcttcc ggttgttgcg gttcattgct
      601 gctacaagcc gccaataata agcctgtaga aagtagcact atttttctta acattctgac
      661 ctctgtttta aaaatttggt gcattgtaac aaaaaaacag cggctgacca ttgcaaattt
      721 tcagcgaaaa atgaccgctt gtttttatcc cttggctgaa tctgttaaac tatcagcaat
      781 gatttctcac aataaataga ctgatgacac aagatttctc cacccatacg ccaatgatgc
      841 aacaatattt gcaactcaaa gctcaaaatc cggacatact attgttttac cgaatggggg
      901 atttttatga gctgttttat gatgatgcga aacgagcggc agcattgttg gatatttcgc
      961 tcaccaagcg agggcaatct gccggtgagc cgattccgat ggcgggtgtg ccttatcacg
     1021 cagtggaggg gtatttggcg aaattggtgg cgttggggga atcggtagca atttgtgaac
     1081 agattggcga cccagcaacc tcaaaagggc cggtagaacg caaagtggta cggattgtta
     1141 cgccgggaac agttagcgat gaggcattgt tacccgaacg ccaagataac ttggtggcgg
     1201 cagtttacga agaaaaaggc acatttgcga ttgctacgct agatatgacc tccgggcggt
     1261 ttttaatcag tgaacttgct agcaaagagg ctctatccgc cgagttacaa cgtgtacaac
     1321 cggcagaaat tctgtatgcg gaagattttt ccgctgcctc aattttaacg aattacaaag
     1381 ggttacgccg ccgtccggtg tgggaatttg agctggtaac ggcgattcag ctgctaaatc
     1441 gccaattcgg cacgcaaaca cttgccggat ttggggtgga aaaagcggtg gtggcacttt
     1501 gtgctgccgg ctgtgtcttg cattatgccc aagaaacgca acgcaccgct ttaccgcaca
     1561 ttaacgcaat tcatttggca caacatagcg atactatttt gctcgatgca gctactcgtc
     1621 gcaatttaga gctgacccaa aacttagcgg gtggcacgga aaacacgctg gcggcggtgt
     1681 tagataaatg tgtgacccca atggggagcc gtctgctcaa gcgttggatt catcagccga
     1741 ttcgagattg tggtaaatta caagcccgac aaaaggcgat aacagcattg atacaatatg
     1801 agcgaatgtc ggatttacag ccgttattac aacaagtcgg cgatatggag cggattctcg
     1861 cccgagtggc gttgcgtacg gctcgccctc gtgacctcac ccgactacgc actgcattgg
     1921 ctcagttacc ggaaattgca aaaaattcac aaaatctgac cgctagtatc gatcagcttt
     1981 tggctcaact ggcggatttc agcccgttac acgatttgct ggagcgggcg attatcgaaa
     2041 acccaccaca actcattcgt gatggtgggg tgattgcaga aggttataat gccgagcttg
     2101 acgaatggcg gcaactttcg gacggggcaa cgcaatatct ggaaaatttg gagatcagag
     2161 aacgtgaaag caccggcatt gattcgctga aaatcggctt taatgcggtt cacggctatt
     2221 acattcagat cagccaaggg caagcacaca aagccccgat tcactatgtt cgccgccaaa
     2281 cgctcaaaaa tgcggagcgg tatattatcc ctgagctgaa aacttacgaa gacaaagtgc
     2341 tgaaagcaaa aggggcatcg cttgcccttg aaaaacagct ttatgatgaa ctgtttgatg
     2401 tgttaatgcc tcgcttaggc gaattgcaat tagcggcgat gatgctgtct gaacttgatg
     2461 tcttaaccaa ccttgccgag cgagctgata gtttaggcta tgtttgcccg agctttagcc
     2521 cgatgcgaat ggtgaatatt aaaggcggca gacacccggt ggtggagcag gttttaaccg
     2581 agccgtttat tgccaatccg gtgtttttaa attcccaacg gcatttattg attgtgaccg
     2641 gcccgaatat gggcggtaaa agcacctata tgcggcaaat tgccctcatt acattgatgg
     2701 cgtatatcgg cagttttgtg ccggcagaaa gtgcggaaat cggcccgatt gaccgtattt
     2761 tcacccgaat tggggcaagc gatgatttag cttcagggcg ttcaaccttt atggtggaaa
     2821 tgaccgaaat ggcgaatatt ctgcatcaag ccaccgaaaa cagccttgtg ctgattgatg
     2881 aaatcgggcg aggcacttct acctatgacg gcttatcact ggcgtgggcg tgtgccgaat
     2941 ggctggcgaa gaaaacccag tcactcactt tgtttgcaac ccactatttt gaacttaccg
     3001 gcttgccgaa tcagctcaaa ggggtggcaa atgtgcattt agacgcgcgt gaacatcaag
     3061 acagtattgt gtttatgcac tcggtgcaag agggggccgc cagcaaaagt tacggcttgg
     3121 cggtggcagc cttggcgggt gtgccaaagc aagtgattca actggcaaag cagcgtttgg
     3181 cacatttgga ggaaatttcc caccaaacca aacaagcaaa cgaacatcca caggcggatt
     3241 tgttgttttc cgatggtttt gatttgcaaa aaaatgaagc aattcaaccg cttgtagtag
     3301 aaaatgaagt tgaaaaagcc ctgaaagccc ttcagcctga tgaacttacc ccaagacagg
     3361 ctttggacga gttgtatcgc ttgaaaaaat tgttggggta aattgaaaaa ataactaaga
     3421 aatcgccccg tttaaggggc gtttttgttt agaacgtatg tgaaaactca atatagacac
     3481 ggtttttgtc ataactatag aagctatgat tgctttttac cttgttatat tgccacgtta
     3541 agcgaggggt aataccctta aaatgcaagg ctctgtgcca gatgctggct tgcacaccat
     3601 attcactgtt acgttgtgta atttggaaaa tcggcattgg ggctcggtat tgtttgcggg
     3661 cgtagctggc acttaattgg gttgaaagcc cgtttttcca ctcttgtccc caaccaatag
     3721 aaacacctcg gcgaataaag ctatcatcta aatcacgggg gctggtgcgg ttaaaattcg
     3781 cccccacaaa ccaatattgc cggctgttag ggtaaaaata gaggctcggg gcaataaaat
     3841 gataattgcc gtctaaatgt tggcggcgag tgtaacgctg ttccgcatat tcgtagctga
     3901 ttgcagattg ccactgtgga gtaatccaat attgccagcg ggcattcaca ccgcctgcgt
     3961 tggagtagcg tttggtgctt tcggtttggc ttgagccacc ggcataccac atctgctcaa
     4021 aaaacggcaa caaggtgatt ttttgttttg cattttgata acccaagccg aggctttctc
     4081 tgagcgaata ttcgttatat tttttgttat tccagtaata tttgccgttt ccgtttaaac
     4141 gaaactcgtg gaagaaacca ttgccccaag accacttttt atccgcctca aagtgaaagc
     4201 cgaccccttg ggcggattct tttttcggtg cagtccagtt gccataggtc gtgcctgcat
     4261 ttggagcatt gttgatattc gggtcattca aataggttaa gccgccttga aaactccatt
     4321 gatcttgctt gccaatcgcc tccaaatagc tattgaccgc atttgcaatt tcttgcggta
     4381 atttgtccgc ttgtaactta taaaattgag cctctgcggc ttcattttcc cgattttcaa
     4441 acaatgcaac cgctaattgc atacggattg gctgattttc agggtatttt gccagtagct
     4501 gacggtagcc ttttattgcc tctgaataat tttgttttgc tttggcatta actgcctccg
     4561 cccattgtac aacttcgctg ttttgtttac tggcgggtaa ttgttgataa ataggcagta
     4621 agaattgaac attctcagtg tggttagtga ccaacgcagt tagcattgcc gagttgagca
     4681 actcaggctg ttgaagcagc tgttggcttg aaatagagat cgattgccgg tgagcctgtg
     4741 cattaaccgc ttgtggtttg gcttgaggtt caggcttttc taatgtatgt aggtttttct
     4801 gcattcgctg gttatccatt ttttcttgaa gttgagccgg tgtggtttcc gcaaatgcca
     4861 ggtttgaggt aaggattaaa agcgttgaga ctattttttt cataaagcta tcttttattt
     4921 gaatagaaaa ggctattttt caatagcctt tagtgaagag ttttgaggtt gttttgctat
     4981 atttttcatt aagttaaata tatagcttta aatataccta ctatatgcta ctaaataaag
     5041 tatgcaatat ttgttatgct ttgtaaataa gaggaaagag atccattttg ggtagaaaat
     5101 agctcattgc ttggaacttt aaatggttat ttcaccaatt caaccacttc cttcgtcaat
     5161 ttcccaatct cctcccactt ctgttcctta atcagggatt tctccacaaa ccaagagccg
     5221 ccgcaggcga ctacgttggg aatggcgagg tagtcgttga tgttttgtgg cgagatgccg
     5281 ccggtcggca taatctgtaa gttgccgtaa gggccgagca gggctttaat cattttcacg
     5341 ccgccactgg cttcggcagg gaaaaattta actgcttgta tgccaagttc gagggcggct
     5401 tcaatcgcca tcgggttgtt cacacccggt gtaacaggca aacctaacac ttggcaatac
     5461 ttaacgatag tcggattaaa acccggagtc acaatgcaat ccgccccagc gtttttggca
     5521 gttaagactt gctctttggt cagcactgtg cctgctgcaa tcaatacttc cggatagttg
     5581 gcttgcacta atttaattgc ctcttcagct gcttccgagc ggaaagtgat ttccaccacc
     5641 ggcaaaccgt tttcggaaag ggttttcgcc agcggtaaaa tatcttctgc tttatccaaa
     5701 gcaatcacgg gaacaacttt cagttgtctt aatttttcaa tgatttgttc ggtggtgtaa
     5761 cgcatttcta gcctcattat gttgtattgc aagcggtcgc ttttgtaaaa aattttgcaa
     5821 atttaaccgc ttgtcgttgt gctattgttg gtctaaatgg attgttcaaa ctgcgatttc
     5881 aaatgagtag tggcggattt ggcaataatc gcccctttgt gctgaatgac gataccggca
     5941 acggcatttc cttgttggca acaggtaacg acatctttac ccaataagta accgttaagg
     6001 aagccggcat taaaggaatc gccggcggaa gtggtatcga ccaccttctc taccgcaaca
     6061 gttggcacaa aagtacgctc cccgttttgc aacaccgttg cccccagaga gccttgtttc
     6121 accacaatgg tctgaatgcc atattgagtg agacggtcaa aggtggcttg ctcattcaca
     6181 tcgccccaaa gcagttgctc gtcatcaaag gtcacgagag ctaaatcgac taattgcaac
     6241 agctcggcat agtgagcttg ggcagcagcc acactttccc acagtttcgg ccggtaattg
     6301 ctgtcaaagg cgattttcac cccttgtgtt ttgagctcac gcaactgtgc aatcagcaaa
     6361 gtgcggtcgt tttccggcaa gatggcaagg ctgataccgc tcaagtaaac catatctacc
     6421 tcgtttagtg ccgagagtgc tttgggatag ccggggtgtt gcaacaaata acgggcggca
     6481 gattgatttc gccaatagag gaacgttcgc tcgccctgtt tatccaactg aatcagatac
     6541 agccccggct ggcggtgctc gtcacgcaac acaaaatccg tgttgatatt atccacctgc
     6601 cacgccgcta acattccctg actgagctta tccgtgccga gagcggaaat ataacgcacc
     6661 tcaatctgtt caggcgaact cacccgagcc aaataggtag cggtgttgag cgaatcccca
     6721 ccataggttt ggtgcatctc cccaaacggc tccccgttta actcaatcat acattcaccg
     6781 agaatggcga gttttttcat aggaatacct tctaagttac acgccgctat aagcagagaa
     6841 tccgccatca acaggtaata caacgccatt gataaagctg gaataatggt gatccattaa
     6901 aaataggatt gcacctacca attcatcggc ttgtccgaaa cgtcccatag gggtattcgt
     6961 gaggatttta ttagctctag ctgttggcgt accatcggcg ttaaatagta gagctttatt
     7021 ttgattactc actaaaaatc ccggtgcaat agcattacag cggataccta cttttgagaa
     7081 ataaactgct aaccattgtg taaagttact gattgcagat tttgctccag aataggcagg
     7141 gattttagtt aatggagtaa aggcattcat actggatata ttaatgatat tagcgccctc
     7201 tttacccaac atatcttttg cgaaaacctg tgttggtaat agtgtgccta agtaatttaa
     7261 attaaataca aattcaatcc ctgctttatc taattcaaaa aaagattttg tattttccgg
     7321 taagttaata tcgtgaaatt cattatctgt cgttgctttt ggattattcc cacctgcacc
     7381 attaattaaa atatcacaag tgccaaaatc ttttagaatt tcatctcttg cctgttttat
     7441 gctttctaat tcaagtacat tagtttggta cgctttcgca atatagcctt catcggcaat
     7501 ttcagaagca aaattctgtg ctgcttctag attgatatcg agtagtgcaa cttttgcacc
     7561 tgtttttgca atttcttttg caaaataagc acatagcaca ccacctgctc cggtaataac
     7621 aacaacttta tctttaaaat tatgattttg ggcaatagac ataataagaa ctcctaagat
     7681 aaccaattca ttggtacgat aataatttca gggaaaagta ttaataagaa cagtattgca
     7741 gcatagacta gcaagaatgg atagatacct ttggttaatc tagcaatacc aatttttgct
     7801 ataccagaac caacatataa taccgttcca acaggaggcg taattaaacc gatagatagg
     7861 ttaattacca tcataatacc aaagtaagca atatcgatgt tatacgctct tagtaatggt
     7921 aatagtactg gtacaaaaat taatactgct gggattaagt ccattacaca gccgactaat
     7981 aataagaaaa tcataatgac gaacattagt acagtcgggc tatcggtaat acctttgata
     8041 aactcaacta actccatagg tatttgagca acagtaactg caaatgcaga tatcattgcc
     8101 gccgctgcaa caaacataac cattgcagtt gttttgatag tgcctaagaa aacatcttgg
     8161 attttatcta aggttaaccc ttttaagata atgctgatta ttgctgcata aattgctgct
     8221 acaactcccg cttctgttgg tgtaaagatg ccgcctctta aacctacgat aataataatt
     8281 ggaagtagca atggtaagaa tgctgattta aatgcagccc aacgttcttt acctgttttt
     8341 ttcggttcaa cggtttgttc ttcgtttcgg tataagaatt tccaaactaa ccataaacct
     8401 aaaaccatta aaaagcctgg aaccattcct cccataaata atttggtaat tgatgcaccg
     8461 gctgtaatac catagacaat cattggaatg cttggtggga taactacaga aataatacct
     8521 gctgcacaga ttaagcctgt tgaacgtgca acatcatatt ttcttgcaac catcatcgga
     8581 ataagaattg caccgagagc cgcggtatca gcaacagcgg agccggataa acctgcgaaa
     8641 attaagcctg aaataatcac tacatagccc aatccgcctt taatatggcc gaccatgctc
     8701 attgcaaaat tgataatacg ttcggaaata ccgccgtgtt tcataatttc accggtcagc
     8761 ataaaaaacg ggatagccat cagcggaaaa ttatttgtac ccattacgaa attctccgtg
     8821 attaattggg catcaaacat atccattttc catagcataa aactggcact aagtagcata
     8881 gagagagcaa cgggcactcc taaaaagaga aagaggaata gacttcctaa aaatagccat
     8941 aacatattta tttctcctct ttaatgaaag ctagccgaat atgtttccat aaatttgtga
     9001 atacaatagc gaaataggag atagatgaaa taactgctgc aaaatataga aacgcagatg
     9061 aaatttcagt tgctggcatt ttttgtgtgt atgtcaataa cattaactgg tatgcaccgt
     9121 aagtaataaa tgacagtgca actaagacta aaatatcagc aaagaacagt aagtacattt
     9181 gtacttttgc cggtagtgca gaaacaacaa tatcaacggt gaggtgtccc ctttcctttg
     9241 caacgaggat tattcctaga aagatcatat agacaaagca gattctggcg aattcctcag
     9301 accaagctat tccggagtca aaaaaatatc gtaaaaccgc attaaaaaag actaggataa
     9361 tcattgtaga tagagcaatt atcgcaagga gtttgagagt tctatctaat gctgtagaaa
     9421 tttgcataaa tttctccttc ttcatttaga tgggcgacct cttttatccg gtcgcctcgc
     9481 ttattgctta tttggctgcg tggatttttg aaataacatc tttagcccaa tcatatttct
     9541 gatagaaatt ttgataaagc gtttcggatg cttttaacat atcagcttta aattgttcac
     9601 tcggaacaat gacttctttg ccatttttgt ggaagaaatc ttttacatct tgttccatct
     9661 tcatcgctaa ttcccactct ttttcttggt agagttttgc tgcctctaag aagattgtct
     9721 gatcttcttt agacatttta ttccaagttt tcaaactaag ttgtagtaag ccaggtgaga
     9781 aaatatgatt agattcaata atatattttt gcacctcgta taaaccagaa tctttaatta
     9841 acatatatgg attttcttgc ccatcaatga ctttttgttc tagtgcggta aatacttcac
     9901 ttaaaggcat actttgaggg ttaatatgca ttgcttttgc ccagtccaca aacaacgaat
     9961 ttagtggaac ccttaatcgc aaacctttaa atccatcaaa attctcaact tttttattgg
    10021 aagagataac acggaagcca ttcataccat acgctagtaa tttaatgccg tacttctcca
    10081 ttttttcccc gatttcttga gcaataggag attctagaac tttcttagct tcggcattat
    10141 ctttaaatag atatggccac tcccatacgc caaaaattgg atcaacattt tgtagtaata
    10201 aacctgtaat gccaccttca atcgtgccat tacgcaaacc atttacaatt tgatcttctc
    10261 ctcccaactg gttatttggg aaaatacgga tttcgtagcg tccttctgtt ttttcttcaa
    10321 tggttttttt gaagtattcc tgcaatgcga tatttgatgg atgaacatct gaattatagt
    10381 gaccaatctt aatgatagtc ttcgcaaatg ccgaaccggt gaacatcagg ctagaaatta
    10441 atagagcttt agtgaaagtt ttgagtttca tagttattac ctcgtaggtg agttagtatt
    10501 taaaatacag cgatgatttt taagtaatca tcaggattag ctgagagttc ttcgatatag
    10561 tgaggtattt catcaaatgt aattacctta ctaatgatat cttttggttc aattcttctt
    10621 gatgccagaa gctctaatgc ttcttcaaat gcccccttgc ttgttcttgc cccataaata
    10681 ttaagttctt tgaaggtgat taaattagtt ggtaatggtg tttctgtttt cggccatccg
    10741 gttaaagcaa tacgtccagc aaaagaggtg tatttaagcg tattttgtac tgcgacattt
    10801 gctcctgacg cttcaataac cacctctgcc attcttccat tggtaattga tttaatagct
    10861 tcaagatcgt tttcttttgt tggattaatt gtgtgtggaa taccaataga ttttgcgtaa
    10921 tccaatcgct tatctaaaat gtcaattaaa atcggcgtcg ctccataagc tttggcaacc
    10981 aatgcagcca ttagcccaat tgcccctgct ccaatgatag caacatgttc accagctttg
    11041 acttttgttc tatgaattgc gtgtaaggaa atagttaagg gttctgctaa cgctaattcg
    11101 tgtattggca tatcaggtgt tttgattatc atatgggctg gatgtctaac aacctcttgc
    11161 attgccccat caatatgtac ccccaatact tttagagatt cgcaacaatt tgttctacca
    11221 atggagcagg gatagcaatg tccacaatag atgtaaggtt caatgatgac acgatctcct
    11281 acattaatat tatttggcat acctttacca gactcaatta ctgtgccaac gatttcatgc
    11341 cctaaaattc taggataagt aacaagtgga ttagtgcctc taaatgctcc aatatcagag
    11401 ccacatatcc ccataccttc tactttgatt agcacatcat tttcaccttt aacaggataa
    11461 gaaacggttt gtataccaac tttattaggt tctacaagac atactgattt gagtggtttt
    11521 tccatgattt tgtccttttt tgataaagtt aatcgacatt ttgtagtgtc aatggtattt
    11581 tatgcacaga tactaacacc aaaaaacaag tttggcattc caatttttgt gattttgtga
    11641 acctgatcac aaaaatgaaa ttttggaatt ccaatttcgt gaggatttat gcaaaatagt
    11701 tccagaactt acactaaaat aggaaaaatt ctcaaagagg aaattgctca aggaaaatac
    11761 agagtaggag ataagttacc tactgagaga gatatttctg aaagatttga agtgagtaga
    11821 actatcgtaa gggaggcgat agtgatgcta gaagtagaaa agcttattga ggtaaaaaaa
    11881 ggatcgggcg tgtatgtcat tagagtcccg gagctttttc cagaagattt tccagaagag
    11941 aaagataatg agctaaggga tgttgggcca tttgaactac ttcaagcacg acaattatta
    12001 gaaagcagta ttgctgagtt tgcagcacag caggctacca aacaagatat acaagtactt
    12061 cgtaacatat tagaaagtga gaagaaactt ttgttagaga agatggatga ctacagtgca
    12121 gataaggaat ttcatcttgc attagctcat atgacgggta acgatgttct gattcaatta
    12181 caagaacagc tttggcgata ccgctttaat agtgcgatgt gggctcagct acactccaga
    12241 attttacagc atgatcatca ccacttgtgg atagaggatc atgagcgaat tttaaatgca
    12301 atacagagaa aaaatcctgc attagctcgt aaagcaatgt ggcaacatct agaaaatgtt
    12361 aaaactaaat tgcttgaatt gtctgatgta gaggatccta aatttgatgg atatctattc
    12421 aatgtaaacc ccgttgtagt aggtatctaa aacctaaact acacaatgag gagtttacta
    12481 tggaacaagc atggcgttgg tatggaccaa acgatccggt atctttagat gatgtaagac
    12541 aagcaggggc aacggggatt gtgacagcgt tgcaccatat tcccaacggg caggtgtggt
    12601 cggttgagga aattaataaa cgtaaggcat tattagctga aaaagggctg gtttggtcgg
    12661 tggtagaaag tgtgcctgtt cacgaagaaa tcaaaactca aacaggcaac tatcagcaat
    12721 ggattgataa ctataagcaa accttgcgta atttggcaag ctgtgggatt gatacggtgt
    12781 gctataactt tatgccggtg ctagattgga ctcgtaccga tctggagtat gaaatgcctg
    12841 atggctcaaa agcattgcgt tttgaccaag tggcgtttgc ggcgtttgag ttatatatct
    12901 taaaacgccc gggagcggaa gccacttact catcagcaga acaagccgaa gccaaagcct
    12961 attttgagca gatgagtgac gctgatattg caaaattaac caaaaatatc attgccggtt
    13021 tgccggggtc tgaggaaggc tatacgctcg aagaattcca agcacagctt gaccgctatc
    13081 aagggctctc ggctgaaaaa ttccgtaccc atttagccta tttcttaaat gagattgtgc
    13141 cggttgcaca agaggtgggc attcgtatgg cgattcaccc tgacgatccg cctcgcccga
    13201 ttttaggctt gccacgcatt gtttcaacca tagaagatat gcaatggttt gtggaaactc
    13261 aaccgcttgc agccaatggc ttcacgttct gtaccggttc atacggcgta ttagccgaga
    13321 atgatttggt caaaatggca gagcagtttg cagatcgcat ttattttgct cacttacgag
    13381 ctacccaacg tgaagaaaat ccacaaagtt tccacgaagc ggatcatctt gccggtgatg
    13441 tcgatatgtt tggcgtggtg aaagcattac ttaccgaaga gtatcgccgc aaggcaaatg
    13501 gcgatcaccg attaattcca atgcgtccgg atcacggcca tcaaatgctc gatgatctga
    13561 agaaaaaaac caacccaggc tattctgcga ttggtcgttt aagaggatta gcggagttcc
    13621 gtggattgga gttggcactt aagaaagtct attttaacga ttagccttat ttattataat
    13681 gccctctact gtagagggca ttttatagtt tgatatgttc aaaaaatatt tcggcgaaat
    13741 aatccttttt ctcgttacct ttattgctgc agcggggtgg tttttctcta aacacgcttt
    13801 agttggatta ccgcctattg gctttatggg agggcgtttt atattagcct ctttgattct
    13861 tctgcctttt tcttaccgag agctgtatcg tttagataag gttcaagtta aatattcggt
    13921 gattaccggt cttacttacg gaatttatac tattttttgg gtattggggc tggcttttag
    13981 tacagtgttt ggtgaagggg cttttttggt gagccttgcg atgctgattg ctcctttgct
    14041 ctcttggttg atattcaaac atacgccacc gaagattttt tggttagcct tacccattgc
    14101 attaagtggg ctttactttc tttctgcgga gaaaggcatc tttcattttt ccttaggcag
    14161 tacgattttt ctggtgtcat cagtgtttgg ggcgttatat tttgtgttaa ataatcaata
    14221 cgccaaacaa gtctcattgt ttccattaat tactatccaa ttggcgatag tcggtgcggt
    14281 ctgtagcttg tattcctatt ttatggaaag ttggcatttc ccgattctca ccgaagtgtg
    14341 gctctggttt gccgcaagtg tattgattgc gacaaattta cgttttttaa tgcaaacact
    14401 ggggcaaaaa tattgccata ttggtacttc tgcactcatt atgttacttg agccggtttg
    14461 gacattgtta ttgagcgtga tgttattggg ggaacaactt agtgcgacaa aatggctagg
    14521 ttgcagcttg attttgatag cattgattat ttatcgactc cctattctac gactcaaaaa
    14581 ataggtaaaa caaaagcaaa tatgccatag tattggaagc agttaggcat tttagagtaa
    14641 gtaacaagcg gtcatttttg caaaaaatct tgcaaaaatg accgctttct ttcttttatc
    14701 cgttcaatct atgttaaaat tctacatttt tataagatga gagagagaaa cgtggaacag
    14761 aatttagtcg aatttttaac caaaacctta gatgatttaa aggcacaaga tattttagcc
    14821 attgatgtga aagggaaatc tagcattact gatacgatga ttttagccac cggtacatcg
    14881 agccgtcacg ttgcttcaac ggcagagcgt ttaattacgg aagcaaaaca ggctgggttc
    14941 gaggtatttg gagatgaagg taaagcagtt gccgattgga tcgtggtcga ttttgggaag
    15001 gcaatggttc acttgttgca atccgatagc cgtgagatgt accaattaga gaaactttgg
    15061 gcgtagcagt tcaataagga acgacaagcg gtgatttttg caacattttt tgcaaattaa
    15121 accgcttgta agtgaaagag agatgaaaat tcaattaatt gcggttggca ctaaaatgcc
    15181 ggcgtgggta acgacagggt ttgaagagta tcaacgccgt tttccgaaag agatgccgtt
    15241 tgagttggtg gaaattccgg caggaaaacg gggcaagaat gctgatacta aacgcattct
    15301 tgagcttgaa ggcaaagcaa tgttggcggc agcgggcaag gcaaaaatcg tgactttgga
    15361 tattccgggc aaagcgtgga caaccgagca gttagccact cagttagagg gctggaaaaa
    15421 cgatgggcga gatgtagcgt tattgattgg cggcccggaa ggattatcac cggaatgcaa
    15481 agccgctgcc gagcagagtt ggtcgttgtc gcctttaacc ttacctcacc cactggtgcg
    15541 ggtggtggtg gcggaaagtt tgtatcgggc gtggtcggtt accattaatc acccttatca
    15601 tcgagagtag tgagtcattt tagatagtgt tatatgtttg gtaaattagc aaaattcaca
    15661 gcttcaaacc agcgagaaaa ggtgcgagac gggcaggcag aaagcaatct gtatgcccgc
    15721 cgtgccttag ttgcgtttct gggggtgttg gcgttaagtg gtgttttatt aaccaacttg
    15781 tatcacttgc aagtggtgaa ttatgaggac taccaaaccc gttcaaacgg taaccgcatt
    15841 aaattgttgc ctgtgccacc ggctcgaggc ttaatttatg accgtaacgg taaagtattg
    15901 gcggaaaatt taacctattt cgggctgttt attgtgcctg aaaagacgga aaacattgag
    15961 cagactttaa ccgagttgaa ggatattgtt gggctgacgg acgaagatat cgagaattat
    16021 cataaagaga aaaaacgcag ttctcgctat accccaatta tgctcaaagg caatttgaat
    16081 gaggctcaga tggctcgttt tgcggtgaac caataccgtt ttccaagttt agatgtgcag
    16141 gcgtattata agcggaatta tccttacggc gagcttttaa cccatattat cggttatgtg
    16201 gcgaaaatta acgaaaacga taagaaaaag ctgcaagaag ccgggaaatt cggcaattat
    16261 gccggttcgc acgatatggg gaaattgggg attgaaaaat tctatgaaga tcagctccac
    16321 ggtgtcaccg gttttgaaga ggtagaaatt aataaccgag ggaaagtaat ccgtaaattg
    16381 cgtgaccaag caggggttgc cggtagcagt attcgcttga gtattgatgt ggaattacag
    16441 caatatgtga tgtcgttaat tgctaagcat aaaggggcgg tggtggtgct tgaccctcgt
    16501 gatagcagta ttttagcgat ggtctcaaac ccaagttatg acaataattt atttgtgggc
    16561 ggtatttcag ggcaggatta taaagcatta ttggacgatc caacccgacc actttatagc
    16621 cgtactacac aaggcactta tccaccggct tcaactatta agccatttat ggcggtggca
    16681 ggtttggaag agggaatgat taccccttct accaccattt cagaccccgg ctattggatt
    16741 ttgcccggca ctacacaacg ttatcgagat tggaaacgta gcggacacgg tgcaactaat
    16801 gtgaataaag caattaccga atcgtctgat acctttttct atcaattagc ctataaaatg
    16861 gggattgata aaatgtcgga ttggatgaaa aaattcggtt tcggagtgaa aaccggtatc
    16921 gatatttttg aggaatccgc aggggtaatg ccaacccgtg aatggaaaca aaaacgctat
    16981 aaaaaacctt gggtgcaggg cgatactatt ccggttggga ttgggcaggg ctactggatt
    17041 tcgaccccgt tacagttggc gaaagccacg gcggtgttaa tcaacaacgg gcgggtgaat
    17101 acaccgcatt taatgcttga agtgcaaagc agtaattcgg ttacgccgta tcaagaccca
    17161 ttgttgtatg aagatattaa aggcgtgccg gatgtctatt ggaatttagc aaaacaggga
    17221 atgtataacg taaaccacgc cgcaaacggt acggcacgaa aagtgtttgc cggtgcattt
    17281 tatcattcag cagggaaaac cggtacggct caggtgttta acttaaacgg taaaaattac
    17341 gataaaaatg cgattaaaaa agagttgcac gaccacgctt ggtttatcgg ctatgctcct
    17401 tatgaacaac ctaaaatagt ggtggcatta attttagaaa atgcaggcgg tggtggtagt
    17461 gccgcggctc ctgttgctcg tcagattatg gattatgctt tgagaaaagg cattggtgaa
    17521 cagccggatt cgcaaaattc tgagcaaaat aaaccgcttg tcacagagga acatcatgaa
    17581 tagtggcttt aaaaaacttt tctggaaaat tttttcactc gatctccttt tattatcagg
    17641 attattagct attaccggtt atggtttatt agtactatat agcgcaagcg gtgcaaatga
    17701 gcggatgttt accagtagac tgattcaagt ttcgctaggg cttgggctaa tgttgataat
    17761 ggcaatggta cctcctcgct tttatcaaaa agtttcgcct tatctgtata ttttctgtct
    17821 gatattattg attttggtgg atttggtcgg cgaaaccagt aaaggagcgc aacgttggtt
    17881 gaatttagga tttgttcgct ttcagccttc tgagattgcc aagctcgctg tgccactgat
    17941 ggtagccact tatttaggta agcggccgct tcctccgagt tttaaagata cttttatcgc
    18001 cttagccatt attattgtgc caaccttatt ggtggcaatt cagcccgatt tgggaacatc
    18061 tattttagtg tgttctgccg gtatttttgt tttatttttg gcagggctaa gttggaaatt
    18121 aattggcgca ggtgtggtgt ttttagccgg ttttatcccg ataatgtggt ttttcttaat
    18181 gcacgattat caaaaaaccc gggtgatgac cttaattgat cctaataaag acccgttggg
    18241 tgccggctat catattattc aatccaaaat tgcgataggc tctggtggca ttaatggaaa
    18301 aggctggatg gaaggaacgc aatcccagct tgaattttta cctgaaccgc ataccgattt
    18361 tatttttgca gtgttaagcg aagagcatgg tatgataggt gtgctgattt tattagcgat
    18421 ttatttgttt attattgccc gaggtttagt gattggcaca aaatcggatt ctgctttcgg
    18481 gcgtatatta tcaggtggta cagcccttct attttttgtt tacgtttttg taaatattgg
    18541 tatggtgagt ggtattttac ccgtagtcgg tgtaccatta ccgcttttca gttacggcgg
    18601 aacctcctat gtgacgctga tggcggcatt tggtttgatg atgtcaacct atgttcaccg
    18661 taagcgtgta ggtagtaata atccttatga taaactgaaa taaattaaac ttttgctttt
    18721 ttgcggtatc aaaaagcagt gaaacgatca tcgttacaaa caataacgac atccacatag
    18781 aggaaaaaac ttatatgaga ttaggtaaaa ttgtaaccct gttgttagct ggatttctga
    18841 catttagttc attaaattct ttggctgcga caaagaatac aaaagctaaa tcgagtattt
    18901 tagccaagaa gcaagcaact tctaaagcaa taaaaaaagt aggtatttct aaagttaaga
    18961 aaaaagaagt agtggctaaa gctacaaaaa agaaaacaat ttctactgtt acaactaagc
    19021 cgattaaatc tacaaaaaag ctggctcgca aggttgtcaa gaaaacggta accgctaaga
    19081 aaaaattggt aaaaaagcag cataagccac tggtcaaaaa acatttccag actggtgttg
    19141 ccagctatta tgcaaattac tttaatggtc gccgaaccgc taatggggag actttcaata
    19201 acgcaaaaat gacggctgca catcgaactt taccatttgg tactttaatt gaagtgacga
    19261 atttacgaaa tggtcgttct gtggtggtgc gtgtaaatga tcgcggacct tatgctcacg
    19321 cacgggtctt ggatttatca tcagccgcag cgaaaaaaat cggtatgcac cattcgggga
    19381 cggcaagagt gaaaattgcg attgttgata agtcaaaatt gggatcgact aatcagtttt
    19441 atgtaatgaa ttaatttaag agggaatatg aaaaaaacat tagtgaaagc gatgagcgtg
    19501 gtaggttttg cggtttcaag cattgcctat gcggatttaa acactaactt caatttatcg
    19561 gcaccccaga tcaacgcaca aacctatatt ttgatggatt acaactccgg tgaagtttta
    19621 gtgagcctaa atccggatca acgtcaatat cctgcatcat tgaccaaaat gatgactagc
    19681 tacgtagttg gtgaagccct aaaatcggga aaagtgcaaa acagtgatat ggtgatagtc
    19741 accgaaaatt cgtgggcgca aaaattcccc ggctcttcat taatgttttt agatttaaac
    19801 agcaaagttt cagtaggtga gttgatgaaa gggctgatta tcgtctcggg taatgatgcc
    19861 tctgtggcgc ttgctgaaca tgtttcaggc tcacaagcgg cgttcattaa tgaaatgaac
    19921 aaatatgccc aacagtttgg cttaaagaat actcacttta ccactgttca cggtttagat
    19981 gaccctgagc aatattcttc tgctcgtgat atggcgatta ttggttcgca tattattcgt
    20041 gatcagccgg aagagtataa aatttatgcg gaaaaagagt tccaatataa catcaaaaaa
    20101 ccacaaccaa accgcaacgg attattgtgg gataaaacca ttcaagttga tggtatgaaa
    20161 acagggcata ctgataaagc cggctataac ttagtcgcat cagcaattaa cccgaataca
    20221 cgtttaattt ctgtagtgat gggcgtgcca acttataaag ggcgtgaagt ggaaagtaag
    20281 aaattactgc aatggggctt tgcgaacttt gaaaccatta aatctattcc ggcagctcaa
    20341 tcggtggcag agcaaagtgt ctattacggt gaagtcaata aagtacaatt aggctcggtg
    20401 caagatagct ttgtgactat cccgaaaggt cgctcggcag atttaaaagc ccgttatgag
    20461 ttagagaaga aaaacctcga agctccttta gcaaaagggc aggtagtggg taaaatgatc
    20521 taccaacttg acggcaaaga tgttgcaagc actaacttac aagtcttaca agatgtaccg
    20581 gaagccggta ttttcggcaa agcgtgggat tggattgccc ttactgtgaa gagcttgttc
    20641 gattaatctt gttatttgcc tttttatccc catctaggga gcaatgcaag cggtgtgatt
    20701 ttgcaaaaaa tttgcaaaat ttcaccgctt accgttttag atatgaatgt ataaaaagtg
    20761 tagtggcgaa aaatttttcg cccctcgaag aaagaataga agaaggatca aaaatgtctc
    20821 aacccaaagc gataaactta caagatttac ctcaagccaa attaaaagat ctgctagagt
    20881 ttccgtgcca tttcacgttc aaagtggtgg gagcaaaccg agaagatttg gttgatgatg
    20941 tggtagtggt cacgcaaaaa tatgccaaag gcgattacaa tccacgtcag caaaaaagct
    21001 caaaaggtac ctataattcc gtttcgattg atattgtggc ggaaaatatt gagcaagtag
    21061 aaactctcta cacggaactt gccaaaatta atggcgtaag aatggtatta taatgcgagg
    21121 ggcgaatgac attcgccctc aatttttcaa taaagcgatg ttggaaaata gaaaatgaaa
    21181 ttaataattc gccaactagg cattcagcct tatgaagaaa tttggcacca aatgcaatct
    21241 ttcacagata gccgtgatgg gaataccgat gatgagatct ggctggttca gcacccggct
    21301 gtgtttacgc aaggatcggc aggcaaaccg gagcatttgt taaatccaac caatattccg
    21361 gtggtgcaaa gcgaccgtgg cggtcaaatt acttaccacg gcgaggggca gcaaattatg
    21421 tatgtgctga ttgatatcaa acggctgaaa tccttgggta aagaagtgtc ggttcgagat
    21481 ttagtgactg ccctggagca aaccgtggta caaacgttgg cagaatatgg catagaaagt
    21541 tatccaaaag ccgatgcacc cggggtgtat gtggacggca agaaaatctg ctcacttggt
    21601 ttacgaattc gaaaaggttg ctctttccac ggtttggcat taaatatcaa tatggactta
    21661 acgccttttc aaaacatcaa tccgtgcggt tatgcagggc tggaaatgtg ccaattaagt
    21721 gaactggttc atcgccctga tttgcgttgc gaagaggttg ctccaaaatt agtggctcat
    21781 ttcagcacaa ttttaggcta taataaccaa caaattatta acaattagga taaaacacag
    21841 taatggctac atcgacagct caaacgacgg caactgctac agtgaaaaaa atgagccctt
    21901 tcaaaatgga aaaaggggtg aaatatcgtg atgccgccaa aacctctgtg attcaggtgc
    21961 gtaatatcga cccggatcaa gaactcttaa aaaaaccgga gtggatgaaa atcaaactgc
    22021 cggcaaattc ggcaaaaatt gatagcatta aaaacggtat gcgtcgccac ggcttgcact
    22081 cggtgtgcga ggaagcctct tgcccgaatt tacacgaatg ttttaaccac ggtactgcaa
    22141 cctttatgat tatgggggca atctgtaccc gtcgttgccc gttctgtgat gtggcacacg
    22201 gcaaaccgct tccgcttgac ccggacgaac ctcgcaaagt ggcagaaacg gtgcaagata
    22261 tgaaactcaa atatgtggtg attacctcag tggatcgtga tgatttgccc gaccgtggtg
    22321 cggctcattt ctctgcgacc gtgcgtgaaa tcaaagcctt aaatccgcat tgtaaggttg
    22381 aaattttagt gcctgatttc cgtggacgtg tggagcaagc ggtggcaatt ctcaaagaaa
    22441 atccacctga tgtctttaac cacaacctag aaaatgtgcc acgtctctat cgtgaagttc
    22501 gtccgggagc ggattacaaa tggtcgttgg aattattgaa aatcttcaag caagagttcc
    22561 cgcatattcc gaccaaatcc ggcttaatgg taggcttagg tgaaaccaac gaagaaatct
    22621 tggaagtaat gcaagattta cgagaccacg gcgtgacgat gctcaccatc gggcaatact
    22681 tacaaccaag ccgccaccac ttaaaagtgg aacgttatgt gccaccggca gagtttgata
    22741 tgttccgtga ggaagctgaa aaaatgggct ttgaacacgc agcctgcgga ccgttcgtgc
    22801 gttcttctta ccacgcggat ttacaagcga aaggcgaatt ggtgaaataa aatcgataag
    22861 ggcgaatatt atttgccctt tgtttttgtg gtttgcaaag ttttagcaaa attaaaccgc
    22921 ttgtaatctc ttctaattta ctcttctata gataatttcg ttgttgcgaa ttattttcat
    22981 tgactatttg ttatagaaag ttacaattca actttccatt tctttttgga gttccaatga
    23041 aaaaattact attaaacagc gtatttgctg ccacattgct tgcttttggt gcaactgcca
    23101 atgccgaaat taaaaccatc actgatgtat tagggcgtga ggtcaaagtt gatgtgcctg
    23161 ctaaacgtgt tgcactgact ttctattacc ctgactatat tgcggtaacc ggtgttgaaa
    23221 atttcgataa ggtagtaggg atttcacgag agttttggga aaagttcaac ccaggcagtt
    23281 gggcattatt tgcagaaaaa atgccaaatc taaaaaacat tgccgatctt ggctatgtga
    23341 atagtggtac tttttcaaca gaaaaaacca tcgcattaaa accagatgtg ttagtgctac
    23401 ctgaaattca atatcaagcg ttagccagtg aaatttcacg cattgagcaa gctggcattc
    23461 ctgttgtagt agatttcaac aagcaaacta ttgaaaacca tacaaaaagc gtgagagttt
    23521 tcggtcagct tacaggcact gaagagagag cggagaaaat tgccaaagag tatgaagagg
    23581 gcattgctga tattcagagc tgtattgata atgcaaaagt aagtaagccg aaaatctatg
    23641 ctgaatttgg taataaaggc ccgaaagagc atagttttac ctttggtaaa aatatgtggg
    23701 gagcgattgc cgaaacggtg cgaggcgata acattagtgc cccgtttgta gaaaactggg
    23761 ggcagattaa ccctgagcag gtgttagttt ctaaacctga tgtgattatg atttcaggta
    23821 cggaactagg caacgacact aaccctgaga ttatgtcgat ggggattaat attgaagaag
    23881 ccgatgctca aaaacgctta aaaggcttta ttgagcgtac aggttggaaa gagttacctg
    23941 cggtaaaatc agggcgtgtt tatggtttat atcatacagc ttctcgctca atttcagatt
    24001 tagcgagtgc tcaatttatg gcaaaagcac tttatcctga attgtttaaa gatatcgatc
    24061 ctgaaaaaac gtatttggat ttccacaaca actacttacc aattacgcca aaaggcacat
    24121 tctttatgca actgaaataa aaataacaag cggtcatttt gcagatttat tttgcaaaat
    24181 gaccgcttgt attcgctttt actatttgcg gttcaaacag caatcaatat ttaaacattt
    24241 gcgaagcggg cggataatcg gcgagccgtt tccatcatat aaaatctcaa tattgacatt
    24301 atagagtctc tgaataatat cgcattccaa catatcacaa gctctgcctt gtgcttgaat
    24361 ttcccctcgc ttaatagcat cacactatcc gaaaattgag ccgcaaggct taaatcgtgc
    24421 agcaccataa ttgtaattag gttattcgct cgagtgtagg cattcacata ttcaagtaag
    24481 ttgatttgat gatacatatc caacgcactg acaggctcat ctagcagcag aatgtgtggt
    24541 ttacgtagca atacttgtgc gaacattacc atttgccgtt gcccgccact tagccgcata
    24601 atatcttgat gagctagatg tgaaataccg agtttatcca taatatcaac ggcttcattg
    24661 agtaattcat cgctaatata catattcagg ctatcaagtt gccctaataa aataacctct
    24721 aaggcactga gtgaggcctc tacctgtgtg tcttgtggca tatagccaat ttctttacgc
    24781 caactatgca agtggcttga ggttaattta ttaccgtcaa aatcaattgt gccttgatga
    24841 gcaatttccc caaatagagt tttaaggaga gaagatttac ccgcaccatt tgggccaagt
    24901 aaagtataga tcttgccttg ttcaaaatgt agattgattt tatcagccac cactgag
//
LOCUS       DANLVT010000024        24856 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.024, whole genome shotgun sequence.
ACCESSION   DANLVT010000024 DANLVT010000000
VERSION     DANLVT010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 24856)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24856)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24856
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.024"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(121..2310)
                     /gene="yccS"
                     /locus_tag="PXC99_000849"
     CDS             complement(121..2310)
                     /gene="yccS"
                     /locus_tag="PXC99_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01666 family membrane protein"
                     /protein_id="HDL5417323.1"
                     /translation="MNKFLRYLQHSWLSENVIKTLPMFISLNIAAVSIWQLGISDFAM
                     PLMLGIIAGGLVDLDNSLIGRAKNLIISLVAFSLSSIGASVSLHLGWLFVPVAVVCTF
                     LLVMLGAIGQRYSTIAFGTLIVAVYNSLAYTPEVLWYHNVVMILLGTLLYGLVGILVY
                     LIFPNRTVQENLASAYLALSHYLLAKSAYFDPDDDDLAAKQLALAKANSEVMAAFDKT
                     RVALFYRLSRQHKQQRTQRMLRYYFTAQDILERASSSHYQYHELFQQLSNSDLMFRFQ
                     RVLELQAAACQKIAMSLRHREVYEHGVRGEKALQGLLNSLNYHQERGLKSAYRWRAIA
                     ENLGNIERQLAQIEQGSSSGEHIEPLSKNFTKSHRLIAENITGLSNISQAIKAHLTFE
                     SQLFRHAVRLSIVVLLCSAIVPILGFDSKGYWILLTAIFVCQPNYTATKTRLIQRVIG
                     TIFGVLVGGSFELFNVALSLEAQLGLIVLTGSLYTFFRLVHYGFSTFYITVLVMISLD
                     IAGVSLESGILMRMLDTLLGTAIAWLAVAFLWPDWKYLNLQRNLHNGLKASGQYLRHI
                     IAQLQFGYNEQLPYRIARRDVHNHLSALSNAITNMYSEPQKYANDLTFAPKLLGIAYT
                     LLGYISTLGAYRIASREINQQVDFSAMFFSHAREVANIIGQIASESRSFAKLSEKLTA
                     IDQDLTQFEQENQQKQNDLALVLIQQLRLIVQLLPQLNSILQLKSVR"
     gene            complement(2354..2812)
                     /locus_tag="PXC99_000850"
     CDS             complement(2354..2812)
                     /locus_tag="PXC99_000850"
                     /EC_number="4.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal synthase"
                     /protein_id="HDL5417324.1"
                     /translation="MKTTVRTIAKQKQIALVAHDSCKQDLIRWTQTHQAQLASHKLYA
                     TGTTGHLLARETGLEITSLLSGPMGGDQQLGGLIAEKKIDLLVFFWDPMNAAPHDPDV
                     KALMRIATVWNIPVAINETTANFLLNADLFNQAISVNVPDYDGYLAERLG"
     gene            2938..4212
                     /gene="thrC"
                     /locus_tag="PXC99_000851"
     CDS             2938..4212
                     /gene="thrC"
                     /locus_tag="PXC99_000851"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HDL5417325.1"
                     /translation="MNLYNIKHPEEQVNFAQAVRQGLGKNQGLFFPEVLPKLDSIDEL
                     LDLPLVKRSQKILSALIGEELPQETLNAMVKNAFTFPAPLAKVNDDIYALELFHGPTL
                     AFKDFGGRFMAQALANVRGDGKITILTATSGDTGAAVAHAFYGLENINVVILYPKGKI
                     SPLQEKLFCTLGGNIRTVAIESDFDACQALVKQAFDDAELRQAIGLNSANSINISRLL
                     AQICYYFEAVAQLPKEKRDNVVVSVPSGNFGNLTAGLIAKTLGLPIKRFIASTNANDT
                     VPRYLQSGKWEPNATVATLSNAMDVSRPNNWPRVEELFKRNGWSLSELGSAALNDAET
                     EAALKAQYAEGYLCEPHGAIAYQSLKDQLQQGETGIFLCTAHPAKFKESVEHILAIEL
                     PLPEALDKHNKLPLLSDEMAADFATLRAYLLK"
     gene            complement(4291..5025)
                     /locus_tag="PXC99_000852"
     CDS             complement(4291..5025)
                     /locus_tag="PXC99_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HDL5417326.1"
                     /translation="MSFKDMTGQKVPSVTFRTRQNDAWVDVTTDELFNNKTVVVFSLP
                     GAFTPTCSSTHLPRYNELACEFKALGVDDIICMSVNDTFVMNAWKADQESENITVIPD
                     GNGEFTEGMGLLVDKNDLGFGKRSWRYSMLVKNGIVEKMFIEPQEPGDPFKVSDADTM
                     IKYLSPNWTAKESVSIITKPGCLFCAKAKALLKEQGYTFEEIVLGRDASTISVRAITG
                     KTSVPQVFIGGKYIGGSDELAAYFAK"
     gene            5140..6024
                     /gene="oxyR"
                     /locus_tag="PXC99_000853"
     CDS             5140..6024
                     /gene="oxyR"
                     /locus_tag="PXC99_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator OxyR"
                     /protein_id="HDL5417327.1"
                     /translation="MNIRDLEYLIALAEHKHFRRAAESCNVSQPTLSGQIRKLEGELG
                     TILLERTSRKVLFTQAGLTLVEQAKVVLREVKILKEMASNQGKEMSGPLHVGVIPTLG
                     PYISPIIVPALKAEFADLELYIYELQTNQLLDQLESGQLDCGIISFVKESESFIEVPI
                     FNEEMYLVVPEQHEWAALKKFDMNLLKNRELLFLDSGHCLRTNTLDYCLSIGAKENPH
                     FKATNLETLRNMVAANVGLALIPKLAAKPIKGVHYIPLENPKPFRAVGMVYRPGSPLR
                     ARYERLAQAITKIMQSEA"
     gene            6027..6659
                     /gene="fabR"
                     /locus_tag="PXC99_000854"
     CDS             6027..6659
                     /gene="fabR"
                     /locus_tag="PXC99_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor FabR"
                     /protein_id="HDL5417328.1"
                     /translation="MANGMSVRAIQKEKTRRALVEAAFNQLSSEKNFSNLSLREVARE
                     AGVAPTSFYRHFKDMDELGLAMVDESGLLLRQLMRQARKRIANGGSVVVVSVETFFEL
                     IADRPNVFQLLLRESSGTSQAFRTAASREIQHFVAELADYIMSKDNHSNRELAYIQSE
                     GLVTLVFTAGSHALDMNNQEREKLKQRVIMQLRMLIRGSTYYANKQASST"
     gene            complement(6686..6985)
                     /locus_tag="PXC99_000855"
     CDS             complement(6686..6985)
                     /locus_tag="PXC99_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4298 domain-containing protein"
                     /protein_id="HDL5417329.1"
                     /translation="MKKADIQKMQDCYNQWVELLPELEKGIEQWKRASALLEPLSRFY
                     ASPEWRELHDSFDEQLDTKGNYSILSEDALWNALSEHHQLALEWLKLSTAYITKE"
     gene            complement(7074..10889)
                     /locus_tag="PXC99_000856"
     CDS             complement(7074..10889)
                     /locus_tag="PXC99_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL5417330.1"
                     /translation="MKGSGLATVGAPETGDNGQTIYTVDVAKAGAPTVTRGNVADAIN
                     NSEKTSSVVAGSKAVTVKAGKEDDKGNTEYTVDVATDKSIGRDNDGNMTVNTDNVTIV
                     KDPTTGEVKANTTTLNNSPEGKVTEPTGDDAKKLVTAGDIANAINNSGFNVTAGDGVD
                     GGETKGKKTQLIKPSETVTFDAGKNMTLTQADGKFTYTTKDNVAFNSIDMSNGKPDTT
                     GSITNLKSGVGGTFADKAAPTDAERKAIADNINNATGDTLNNAVNVGDVQAAMKAATT
                     KVEGDKGVTVTSKTNDDGSTTYTVEAKTDGTTIKVNDKGEITANTSELTNNPDGKVEE
                     PTEPNALVTAKTVADAINNAGFNIKANGDEKSLVKTGDTVQFLNGKNIEITRDGNNIT
                     VSTAKNVNFDSVQFGNEGPKITNNGGNINVGDKDGNAVKVTNVAAGDVNADSKDAVNG
                     SQLYTFAMASREEVKSTDKSVTVNTTKNADGANVFDLSVNTDDVTIVKDPTTGAIKAN
                     TTALNDANNDGRIDEPTADDAKKLVTAGDITNAINNSGFTLKTSAVEGGEKLSGGDEL
                     INPGKAVEMVAGKNLTVKQEADGKVIYATKDDVKFSSVTSNTVTVPTDEADPANNPIT
                     INKDGINAGNKAISNVASNLIPVTADDKVQPADNNPTNLADKLSNAATLGDVLNAGWN
                     LQGNGKAVDTVVHNDTVDFINGKGTTVTVENKDGKNTIKVDSPIEFVNQDPTDSSTPS
                     NTAKFTGEAPVQLGNVASSVRNEDGSTPEGKDRAEAIKNAEGDKLNNVVNLGDLQAAT
                     NAATTKVGGNRGVTITPSTNADGSTTYNVEAKTDGTTIKVDNEGNITANTSELGNNED
                     GTVKAPTQPNALLIAQTVADAVNNAGFNIKSAGNKAAGDQAATKLVKTGEEVVFEAGD
                     NLTVKRDGNQFTFATAKDVSFNSVQFSENGPKITNDGDNIKVGDKDGKPTKITNVADG
                     DISPVSTDVINGKQLNNYAKVNGNNIGTDEDGSINIVNGNGTTITSDKAGEVKVNVNI
                     TDLTVADNGKINVQDPNGTGSRFVNATTVANAVNNVSWNVDSKAVGTGAVEGDKAPAK
                     VKAGSTVSVNAGNNIKVTRKGSDVTVAVSDTPEFTSKTGDTLVNNNGVTINNGSAGKA
                     VSLTKDGLNNGGNRITNVKAGEADTDAVNVGQLKGAVNHLNNKIHRNNREARAGIAGS
                     NAAAALPQVYIPGKSMVAAAGGTFKGENALAVGYSRSSDNGKLILKLQGNANSRGDFG
                     GGVGVGYQW"
     gene            complement(10852..11337)
                     /locus_tag="PXC99_000857"
     CDS             complement(10852..11337)
                     /locus_tag="PXC99_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417331.1"
                     /translation="MDTGSITVDNTTGAVTTPAEEDKVATTKTVSEAIQKAGWNAKSG
                     GNKADGDQEAAELINPGEKVIFAAGDNLKVKRVGTIFTYETAKDVKFDSVTFGDNGPK
                     ITNKDGNVNIAGNDGNPTKITGVKAGEADTDAVNVSQLKQAAASQNRSERFRFSNCWC
                     T"
     gene            complement(11346..13505)
                     /locus_tag="PXC99_000858"
     CDS             complement(11346..13505)
                     /locus_tag="PXC99_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5417332.1"
                     /translation="MGARATSANAIALGTDTAATGNRATAFGAGALATGNRSTVMGWR
                     SAASGTRSFAMGSGAMGDKSVANATYSLALGSSANANATSTATRGTAIGYNATVSGVN
                     ATALGVSAVSSNQSTVAIGDSAKASAGFAIALGSGANVALNNSVALGSNSTVSNAVAV
                     PSATVNGITYSGFAANTTAAGNVVSVGSNTIKRQIQNVAAGQISATSTDAINSSQLYM
                     AMNATGNLANSTKNILGGNATVKPDGSVTYTNIGGTNKNTIEEALKAVKTEVVAGSNV
                     NITNATGANGQTIYTVNAYNTTANSSSPDYITVTGKAATAANTTNYEIGLTKKAIDDF
                     TKDTQATVVSNDGTVTVKSTERNANGTVIYDLSVNIPAQASQIQYFSVNSTVPENQAN
                     DGAKSRNSIAIGPNATATGGEQAAVALGTNSNANGNGALSLGVATVSKGIQATAVGHS
                     ANATANGTTALGRQTNATAGDATAVGSNANATAEKASAFGVAANASANASLAVGANSI
                     ASAQSAVAVGTRANATAQFATALGMGAQATLNSSVALGSESVVRAATPTENATVGGIT
                     YNGFAGVNKDTNYVVSVGSAGKERQIQNVAAGQISATSTDAINGSQLYMAMNATSNLA
                     NSTANNFGGGSVVNPDGSVTQPKYNVTNAAGTQYGNTATNVGDAITNLNNYVNQGFNI
                     KDNAGETKGTVTPNESVQFVNGKGTVSNVTQEADGVK"
     gene            complement(13734..13934)
                     /locus_tag="PXC99_000859"
     CDS             complement(13734..13934)
                     /locus_tag="PXC99_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ESPR domain-containing protein"
                     /protein_id="HDL5417333.1"
                     /translation="MNQIFKVIWNQATQSWVAVSELQRAKGKTKSVSSASKATLALLA
                     GASAVLGANDAVAVVSYRFNNK"
     gene            14298..15452
                     /locus_tag="PXC99_000860"
     CDS             14298..15452
                     /locus_tag="PXC99_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDL5417334.1"
                     /translation="MNQFFPLIFSLTLFSGVTLALEKAPRTMPTEGINKPLLGQILFF
                     DNMLSHNGSQNCSSCHNPDYAFIDNRTTPAKGVVSQGDTPTKFGKRNSPTMLYAKYSP
                     EFHFDEQSQEYIGGQFWDGRAKNLAEQAGMPPIDPNEMGMPNKLEVAKRLYNVPMYQR
                     FLGQFYGEKVWESYESVYAAMEDAIATFQQENKLLAPFDSKYDLFLKGEVQLTALEEK
                     GRALFFNKAQTNCSSCHQLQSAANHQEETFSNYHYYNVGVPGNPDLIAVNGFAPDFVD
                     LGLFENPNVKGDETQKGKFKTPTLRNVAVTALYMHNGVFKELKTVLLFLDSYNNPERK
                     INPETGTAWQQAEFEPTIAHQKLKAKPLSDEEIDALEAFLKTLTDERYRK"
     gene            complement(15500..16489)
                     /locus_tag="PXC99_000861"
     CDS             complement(15500..16489)
                     /locus_tag="PXC99_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL5417335.1"
                     /translation="MNDLIIYNTEDGKSNVALLVVENEAWLTQNQLAELFDTSVQNIS
                     EHIKNILKDKELDENSVIKDYLITAQDGKNYQVKHYSLEMILAIGFRVRSPRAVQFRK
                     WANSTLRTYLEKGFLIDSERLKNPQGRLDYFDELLEQIREIRASELRFYQKVRELFKL
                     SSDYDKTDKNTQMFFAETQNKLIYAITKHTAAELICQRADATKMNMGLTSWKGKVVRK
                     GDIVIAKNYLDNNELDSLNRLVMIFLESAELRVKNNQDLTLGFWRRNVDMLIEFNGFS
                     VLGNGGTITHKQMESFVREQYEKFDIQRKCLKQKEADWEDLQALEKLESELTR"
     gene            complement(16649..18013)
                     /gene="mpl"
                     /locus_tag="PXC99_000862"
     CDS             complement(16649..18013)
                     /gene="mpl"
                     /locus_tag="PXC99_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HDL5417336.1"
                     /translation="MKKHIHILGICGTFMGGVAMIARELGYKVTGSDTNVYPPMSTFL
                     AAHGIEIIPNYDVAQLQPAPDLVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLL
                     KDKWVLAVSGTHGKTTTTGMLAWILDQNGIDTGFLIGGVAGNFGISARAGNSPFFVIE
                     ADEYDSAFFDKRSKFVHYTPKTLIINNMEFDHADIFDDLKAIQRQFHHLVRTMPQSGC
                     ILSAIADQNVQDTLKMGSYSQLQFIGEQNEWFAKPLNADCSQFEVFHLGVKQGEVHWS
                     IIGKHNMHNALMAIAAAHHAGVEVQGACEALGKFVNANRRLEVKGEVNGITVYDDFAH
                     HPTAIEATIDALRGKVGKNQRILAVLEPRSNTMKMGVHKDEIAPSLHDAEAVFVYQPD
                     IIAWSVSEITNVLSQPAYWSANIDDLVDLVVKEAKPTDHILVMSNGAFGGIHQKLLAK
                     LADK"
     gene            complement(18309..19064)
                     /locus_tag="PXC99_000863"
     CDS             complement(18309..19064)
                     /locus_tag="PXC99_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HDL5417337.1"
                     /translation="MKLKSFKPMFMLLSVAFLTACSSSINPETGVRDDPLEGFNRAMW
                     KVNYDYLDPYVLKPVAKGWKEYVPSPVKTGLINVANNLDEPVSFVNRLIEGEGKKAMV
                     HFNRFWINTVFGLGGLIDWASLDEGLRLNNGQRGLGESLGAHGVPSGSYIMMPAYGAT
                     TPRQGIGSAVETGYSVLTYVGSPWSIAKFVVQGVDTRSKLLEQDALLEQAQDPYVTFR
                     EAYFQNLEFKVKDGNVEQSQQEQLSEEELKNID"
     gene            19219..19536
                     /gene="metJ"
                     /locus_tag="PXC99_000864"
     CDS             19219..19536
                     /gene="metJ"
                     /locus_tag="PXC99_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="met regulon transcriptional regulator MetJ"
                     /protein_id="HDL5417338.1"
                     /translation="MADWNGEYISPYAEHGKKSEQVKKVTVSIPIKVLEILTNERTRR
                     QIKNLRHATNSELLCEAFLHAFTGQPLPNDEDLMKDRADEIPEAAKQKMCELGIDPDE
                     WQY"
     gene            19584..19814
                     /locus_tag="PXC99_000865"
     CDS             19584..19814
                     /locus_tag="PXC99_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF997 family protein"
                     /protein_id="HDL5417339.1"
                     /translation="MYQQLTTEARWAVLLTLIYLLGWVGFAYFSPQGRGIFGFPIWFE
                     LSCIFLPVLFSLVATIVVKKVYKNIDLEVNNE"
     gene            19807..21231
                     /gene="panF"
                     /locus_tag="PXC99_000866"
     CDS             19807..21231
                     /gene="panF"
                     /locus_tag="PXC99_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/pantothenate symporter"
                     /protein_id="HDL5417340.1"
                     /translation="MNSEMILPLIAYLIFVFGVAFYAYRKRQGGSFISEYYIGGRSMS
                     GFVLAMTTAATYVGASSFIGGPGAAYKYGLGWVLLAMIQVPAVLLSLGALGKKFALLA
                     RKHNSVTINDMLLARYQNKFVVWIAGLALLLSFFAMMTVQFIGAGRLLETTLGIPYQT
                     AVMIFAITVGLYTFIGGFRAVVLTDTIQGLVMIVGTSILLAGVIYATGGVENAMHTLE
                     AINPQLTTPYGIDERPLDFTFMTSFWVLVCFGLIGLPHIAVRSMACKNSQALHRAMII
                     GTVVIAILMFGMHLSGVLGRAVVPDLKVPDQVIPTLMVQVLPPVVAGIFLAAPMAAIM
                     SSIDSMLIQSSSTLIKDLYLAIKPNAINNEKKIKLFSTITTLTFTVLLVFAALTPPEM
                     LIWLNLLSLGGLEATFLWVIVLGLYWEKANATGAIYSMLAGLSCYVLMTTFKIAIFSF
                     HAIVPSLLIGLIAFLIGNRFAPKV"
     gene            complement(21308..22498)
                     /gene="nhaA"
                     /locus_tag="PXC99_000867"
     CDS             complement(21308..22498)
                     /gene="nhaA"
                     /locus_tag="PXC99_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HDL5417341.1"
                     /translation="MEKLKEFLKSEASGGVLLLVFAFAAIVCANTSLSDFYFEFLQTI
                     VSVQFGEFALNKPLLLWVNDGLMAVFFTLVGLEVKKELFEGSLSSYKKAIFPAIAAVG
                     GMIVPAIIYWAINQNHPEYHNGWAIPMATDIAFAVGIVALLGTRVPLALKAFLLALAI
                     IDDLGAIVVIAIFYSQEISVQALTIAAIAIIGLVLLNRFKVTSLCAYLVVGLVLWTSV
                     LKSGVHATLAGVIIGFCVPLKGKHGERPAEELEHILAPWCAYMILPIFAFANAGVYLL
                     EMGMEQLSSPLPLGIALGLIIGKTLGVFGFSYLAVLFRLASLPQGVNFKQIFAIAVLC
                     GIGFTMSMFLASLAFDVSEAGESITALARLGILLGSAVSAILGYTLLRMATKQNNPEN
                     NATY"
     gene            22666..23094
                     /locus_tag="PXC99_000868"
     CDS             22666..23094
                     /locus_tag="PXC99_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL5417342.1"
                     /translation="MTHDWLYWALASALFAALTAIFAKVGLQGVDSDFATFIRTVVII
                     IALIAFLTYSGKWQPLDSLSSKNWLFLILSGLATGLSWSAYFKALQMGNASQVAPIDK
                     FSLVLVTLFAVIFLGERPSGQDWLGIGLVAGGVLLLAFKR"
     gene            23100..23822
                     /locus_tag="PXC99_000869"
     CDS             23100..23822
                     /locus_tag="PXC99_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HDL5417343.1"
                     /translation="MQNFANIEIAFIHRKAPLPSDFSYPEMPGGLTEKQVQKWQSRRV
                     AFFLLTELFKKHHLDLDLLADMQRSPSGRTFVDSEQIDFNISHSGEWIAVIFSYSFAK
                     LAVGIDIEHPQKIRRYHDLICHYGNAEEQNVLLANHSPILSNLAERFYLSWCLREAIL
                     KSQGVGIVKLSEVKHLPLEKQIFSAHCPKGKLHFVSELPFYLSYFYQQPQNMLLSEPL
                     LYHWQNGQFQPIKCQSLVYDVN"
     gene            23832..24251
                     /gene="psiE"
                     /locus_tag="PXC99_000870"
     CDS             23832..24251
                     /gene="psiE"
                     /locus_tag="PXC99_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate-starvation-inducible protein PsiE"
                     /protein_id="HDL5417344.1"
                     /translation="MPKKSLEEHHSSFGKIASETFQWIMNIALLVTGALLSYSLFAEA
                     YSLYELSFSDSEKFQIVEKIVIFFLYFEFLALIVKYFKSNYHFPLRYFLYIGITAMVR
                     LIIVDHSNALHTLLFALSILVMIIALYIVHTDRLHKS"
     gene            24260..>24856
                     /locus_tag="PXC99_000871"
     CDS             24260..>24856
                     /locus_tag="PXC99_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HDL5417345.1"
                     /translation="MKLTQYQHNDLQILNRETVYKGHFELQKITFRHKLFSGEMSGEV
                     VRELLIKGEAAALIAYDPTLDKVVLIEQVRIGAYDAGQKKSPWLLELVAGMVDKGNEE
                     PAEVAMREAKEEAGLEVTTVQHALSVWDSPGGQLERLHLFLGLIDSTQVKSGEVHGLL
                     EEENEDILVHVVSREQAYQWVEDGTIDNVIAVIGLQWLQ"
BASE COUNT         7097 a         5558 c         4733 g         7468 t
ORIGIN      
        1 attgcacatc tctatatgtc cttcaaaaaa aacaaaacat caacaaaaaa ttaacaaaac
       61 cataatattt ttattgattt tgtgaagcat gtcacatttt atgatttaat tataggctca
      121 ctaccttaca ctcttgagct gtaatatact atttaactgc ggtaataact gcacgatcag
      181 tctgagttgt tgtatcaaca ctaaggcgag gtcattttgc ttttgctgat tttcttgctc
      241 aaattgggtg aggtcttggt cgatagcggt caatttttcc gataattttg caaatgaacg
      301 gctctctgag gcaatttgcc cgatgatgtt tgccacctct ctggcgtgtg agaagaacat
      361 tgcggaaaaa tccacttgtt gattaatctc tcggctagca atacggtaag cccctaaggt
      421 ggaaatataa cccagcaagg tgtaagcaat acctaacaat tttggggcga aggttaaatc
      481 gttcgcatat ttttgtggtt cgctgtacat attggtaatc gcattactca gtgccgataa
      541 atggttatgc acatcacggc gggcaatacg gtaaggcagt tgctcgttat aaccaaactg
      601 caactgggcg ataatatggc gtaaatattg cccactggct ttcaagccgt tatgtaagtt
      661 acgttgtaaa tttaaatact tccaatccgg ccataagaat gccactgcca gccacgcaat
      721 cgctgtacct agtaaggtat caagcattcg cattaagatg ccgctttcaa ggctcacgcc
      781 tgcaatatca aggcttatca ttaccaacac agtgatataa aaggttgaaa agccataatg
      841 taccaagcgg aaaaaggtat aaagcgaacc ggtcagtacg attagcccaa gctgggcttc
      901 gaggctgagc gccacgttaa acagttcaaa agagccacca accagcacgc cgaaaattgt
      961 gccgatcaca cgctgaatca gtcgggtctt agtagcagtg taattcggtt ggcagacaaa
     1021 aatggctgtg agtaaaatcc agtagccttt gctatcaaag cctaaaatcg gcacaatcgc
     1081 actgcacaac agcaccacta tcgacaaccg aacggcgtgt cgaaacagtt gggattcaaa
     1141 ggttaaatgg gctttaattg cttggctgat attgcttaag ccggtaatat tttcggcgat
     1201 caagcggtga gattttgtga aatttttact taacggttca atatgctcac cactgcttga
     1261 gccttgttca atctgggcta gttgccgctc aatattgcct aaattttctg caatagcacg
     1321 ccagcgataa gcacttttca agccccgttc ttgatgataa ttcaatgaat taagcaagcc
     1381 ctgcaaggct ttttcgccac gaacgccgtg ttcatatact tctctatggc gtaacgacat
     1441 tgcaattttt tgacacgccg cagcctgtaa ttccagcacc cgttgaaagc ggaacattaa
     1501 atcactgtta cttaattgtt ggaacagttc gtgatattga taatggctgg aacttgcccg
     1561 ctctaaaata tcttgagcgg tgaaatagta acgcaacatt cgctgtgtcc gttgctgctt
     1621 gtgctggcgg cttaggcggt agaatagggc aactctggtt ttatcaaagg cagccatcac
     1681 ctcactattg gctttcgcca aggctagttg tttggcagct aaatcgtcat catcagggtc
     1741 aaaataggca gatttcgcca gtaaataatg gctcaacgca aggtaggcgg acgctaaatt
     1801 ctcctgcacg gttcgattcg ggaaaatcag gtacaccaaa ataccgacca aaccatagag
     1861 taaggtgcca agtaagatca tcaccacatt gtgataccac aatacttcgg gcgtataagc
     1921 caggctgtta taaaccgcca caatcagcgt gccaaaagca atggtactat agcgttgccc
     1981 gattgcccct aacattacca gcaaaaaggt gcaaaccacc gccaccggca caaacagcca
     2041 gcccaaatgg agcgacacac tcgccccaat cgaggaaagc gagaacgcca ctaggctgat
     2101 aatcagattt ttcgctcgtc cgattaggct gttgtctaaa tccaccaaac cgccggcgat
     2161 aatgcctaac atcaacggca tcgcaaaatc agaaataccg agctgccaaa tgctgaccgc
     2221 cgcaatgttt agcgaaataa acatcggcag ggttttaatt acattttccg aaagccaact
     2281 gtgttgtaga tatcttaaaa atttattcat atttgctcat ttcgggcagg cacaggacct
     2341 gcccctacct acactacccc aaacgttctg ccaaatagcc atcataatcc ggcacattca
     2401 cgctgattgc ttgattgaac aaatccgcat ttaacagaaa attagcggtg gtttcgttaa
     2461 tcgccaccgg aatattccaa acggtcgcaa tccgcatcag ggctttcaca tcaggatcgt
     2521 gcggagcggc attcatcgga tcccaaaaga acaccagcag atcaattttc ttttctgcga
     2581 tcagcccgcc taattgctga tcgcccccca tcgggccgct taacaatgaa gtaatttcaa
     2641 gccctgtttc tctggcgagc aaatgcccgg tagtgccggt ggcatatagc ttatgcgagg
     2701 caagttgggc ttgatgagtt tgtgtccaac gaattaaatc ttgtttacag ctatcgtgag
     2761 ccactaaggc aatctgtttt tgttttgcga tggttctgac ggtggttttc atttttagct
     2821 cctttgcaaa atttttcaca aatcataccg cttatttttc gcttttgcat tgactaatca
     2881 cggcttatgg ctaaaatcag gtaaaaattc gcattttaaa acaaaggatt aaccgcaatg
     2941 aacttataca acatcaaaca ccctgaagaa caagtcaatt tcgcccaagc ggtacgccaa
     3001 ggcttaggca aaaatcaagg gctatttttc cctgaagtgt tacctaaatt agatagcatt
     3061 gatgaattat tggatttacc tttggttaaa cgcagccaaa aaattctttc agccttaatc
     3121 ggcgaagagt taccgcaaga aaccttaaat gcaatggtaa aaaatgcgtt cactttcccg
     3181 gcaccgcttg ccaaagtcaa tgatgatatt tatgcgttag aattatttca cggtccgact
     3241 ttagccttca aagattttgg tgggcgcttt atggctcaag ccttagccaa tgtacgagga
     3301 gacggcaaaa ttactatttt aaccgctacc tcaggtgaca ccggtgcggc ggtggctcat
     3361 gctttctatg gtttggaaaa tatcaacgtg gtcattcttt acccgaaagg caaaatcagc
     3421 ccattacaag aaaaattatt ctgtacctta ggcggtaata ttcgcactgt tgcgattgaa
     3481 tccgactttg atgcttgcca agccttagtg aaacaagcct ttgatgatgc cgagctacgc
     3541 caagcgattg gtttaaattc cgcaaattcc atcaacatta gccgtttact ggctcaaatt
     3601 tgctactact ttgaagcagt tgctcagtta ccaaaagaaa aacgagataa cgtagtggtt
     3661 tcagtaccaa gcggtaattt cggtaactta accgccggct taattgccaa aacattaggt
     3721 ttaccgatta aacgttttat tgcctcaacc aatgccaatg acaccgtgcc acgctattta
     3781 caatcaggca aatgggaacc aaacgcaacc gttgcaaccc tttctaatgc aatggacgta
     3841 agccgcccga acaactggcc acgagttgaa gaattattta aacgcaatgg ctggagtttg
     3901 tctgaattgg gttctgccgc attaaacgat gccgaaaccg aagcggcttt gaaagctcaa
     3961 tatgcagaag gttatctgtg tgagcctcac ggtgctattg cttaccaaag cttgaaagat
     4021 cagctacaac aaggcgaaac cggtattttc ttatgcaccg ctcacccggc aaaattcaaa
     4081 gagtcggtgg aacacatttt agcgattgaa ttgccgttac cggaagcatt agataagcac
     4141 aacaaactgc cactgttatc cgatgaaatg gcagcagatt ttgcaacatt gcgtgcatat
     4201 ttgttgaaat aaatattcaa taatagaaaa gggattaagt attaaactta atccctcttt
     4261 ttatgcatta caagcggtta tatttgccta ttattttgca aaataagcag ctaactcatc
     4321 actaccgcca atatatttac cgccgataaa tacttgtggc acagaggttt tacctgtaat
     4381 tgctcgtaca gaaattgtgc ttgcatcacg acctaacaca atctcctcaa aagtatagcc
     4441 ttgctctttt aataatgctt ttgcttttgc acagaacagg caacccggtt tagtgataat
     4501 cgaaacagac tctttagctg tccaatttgg acttaaatat ttaatcattg tatcggcatc
     4561 tgatacttta aacggatcgc ccggttcttg tggctcaata aacatttttt ccacaatacc
     4621 gtttttcacc agcatcgaat aacgccaaga acgtttacca aacccaaggt catttttatc
     4681 aactaatagc cccatacctt ctgtgaactc accattacca tcaggaataa cagtaatatt
     4741 ttcagattct tgatctgctt tccaagcgtt cattacaaag gtatcattaa ctgacataca
     4801 gatgatatca tctaccccta atgccttaaa ttcacaagct aattcattat agcgaggcaa
     4861 atgtgttgat gaacaagtcg gtgtaaatgc tccgggtaat gaaaacacaa ccaccgtttt
     4921 gttattaaat aactcatcgg ttgtgacatc aacccaagca tcgttttgac gtgtacgaaa
     4981 tgttacactg ggtactttct gacccgtcat atctttaaaa gacatattaa tgttctccta
     5041 tagaattata tattacaaaa atcttaggca ttatactcac aaatatggca taattcagcc
     5101 tatcagaaca ataggaaaaa tttaaattgg aggaatcaag tgaatattcg agatttagaa
     5161 taccttattg cacttgcaga acataagcat ttccgtcgtg cagcagaatc ttgtaatgtt
     5221 agccaaccta ctttaagcgg gcaaattcgc aaattagaag gcgaactagg cactattctg
     5281 cttgaaagaa ccagtcgcaa agtcctcttt acgcaagcag gcttaacatt agttgaacaa
     5341 gccaaggtag ttttacgtga agtaaaaatt ctaaaagaaa tggcaagcaa ccaaggtaaa
     5401 gagatgtctg gcccgcttca tgttggtgta atcccaacct tggggcctta catttcgcca
     5461 attattgtgc ctgcattaaa agcagaattt gcagatttag agctgtatat ttacgaatta
     5521 caaaccaacc aattattaga tcaacttgaa tccggccagc ttgattgtgg cattatctca
     5581 tttgtaaaag agagtgaatc ttttattgaa gtgcctatct ttaatgaaga aatgtacttg
     5641 gtagttccag aacaacacga atgggcagcg cttaaaaaat tcgatatgaa tttattaaaa
     5701 aaccgtgagt tgctcttttt agacagtggc cattgtttac gcactaatac gctagactat
     5761 tgtctatcca ttggagcaaa agaaaatcca cactttaaag ctaccaacct tgaaacctta
     5821 cgcaatatgg tagcagcaaa tgttggccta gcattgattc ctaaattagc cgctaaaccg
     5881 attaaaggag tacattatat tccacttgaa aacccgaaac cgtttcgagc tgtgggaatg
     5941 gtgtatcgac caggttcacc attacgcgcc cgctatgagc gtttagctca agccattact
     6001 aaaattatgc aatccgaggc gtaaaaatgg caaacggtat gagtgtgcgc gcaattcaga
     6061 aagaaaaaac acgcagagca ttagtagaag ccgcctttaa tcaattaagc tcagaaaaaa
     6121 atttctctaa tctcagtttg cgtgaagttg cacgtgaagc tggagtcgca ccgacttcgt
     6181 tttaccgcca ctttaaagat atggacgaac taggcttagc aatggtggac gaatccgggc
     6241 tactattacg ccaattaatg aggcaagctc gaaaacgaat tgcaaatggc ggaagtgttg
     6301 tcgtggtttc agtggaaaca ttcttcgaac tgattgccga ccgccctaac gttttccagc
     6361 tattactacg cgaaagctcc ggtacatcgc aagcgtttag aaccgcagca tcacgcgaaa
     6421 ttcaacattt tgtagctgaa ttggcggact atattatgag caaagataat cacagtaacc
     6481 gagaacttgc ttatattcaa tcggaaggtt tagtcacgct agtatttact gccggttctc
     6541 atgctttgga tatgaacaat caagaacggg aaaaactaaa gcaacgtgtc attatgcagc
     6601 taagaatgct gattcgtggc tccacctatt atgccaataa acaagcttca tcaacataaa
     6661 aaaacagacg cctaagcgtc tgtttttatt ctttcgtaat atatgcagtc gatagcttta
     6721 accattctag tgctaattga tgatgttcag ataacgcatt ccataacgca tcttctgaca
     6781 agatactata attgccttta gtatctaact gttcatcaaa actatcatgt aattcacgcc
     6841 attccgggct agcataaaac cgacttaagg gttccaaaag tgcagaagct cgtttccatt
     6901 gctcaatccc cttttccaat tctggtaata gctctaccca ttggttataa caatcctgca
     6961 ttttctgaat atctgctttt ttcattcttt accgcttaca ccataaattt tagcctcaat
     7021 ataacataaa aatccccttc cgaagaaggg gatttcaact caattaggct aaattaccac
     7081 tggtatccaa cgcctacacc gccaccaaag tcgcctcggc tattcgcatt accttgtaat
     7141 ttcaagataa gcttaccgtt atcacttgaa cgtgaataac ctactgcaag cgcgttttca
     7201 cctttaaatg taccacctgc tgcagccacc atagatttac ctggaatgta aacctgcggt
     7261 aacgctgctg ctgcatttga accggcaata ccagcacggg cttcacggtt attacgatgg
     7321 atcttgttat ttaagtgatt aacagcacct tttaactgac caacattaac agcatcggta
     7381 tctgcctcac ctgctttaac attagtaata cggttaccac cattatttaa gccatctttc
     7441 gttaagctta ccgcttttcc tgcagagcca ttattaatgg ttacgccatt attgttcacc
     7501 aatgtatcac cagtcttgct agtaaattca ggggtatctg aaacggctac agttacatca
     7561 gaacctttac gtgtcacttt gatattatta cctgcattca cgctcactgt actacctgct
     7621 tttactttcg caggggcttt atccccttca accgcacctg taccaactgc tttagaatct
     7681 acgttccagc ttacgttgtt tacggcattt gctactgttg ttgcattcac aaagcgtgaa
     7741 ccggtaccgt taggatcttg aacattgatt ttgccgttat cagcaacggt taaatctgtg
     7801 atgtttacgt tcactttcac ctcaccagcc ttatcactgg taatagttgt accattacca
     7861 tttacgatat tgatagaacc atcttcatca gtaccaatgt tattaccatt cactttcgca
     7921 tagttgttca gctgtttacc gttgataaca tctgtgctta ctgggctaat atcgccatct
     7981 gctacattag tgatcttagt tggtttaccg tctttatcac cgactttgat gttatcacca
     8041 tcattagtga ttttcggacc attctcactg aactgtacgc tattgaagct cacatctttt
     8101 gctgtcgcaa aagtaaattg attaccatca cgtttaacag ttaagttatc acctgcttca
     8161 aacacaactt cttcgcccgt tttcactagc ttagtcgcag cttggtcacc ggcagcctta
     8221 ttacctgcag atttaatatt aaagcctgca ttattcactg catctgcaac agtttgagca
     8281 atcaataacg catttggctg agttggtgct ttcaccgtac catcttcgtt gttacctaac
     8341 tcactggtat ttgcagtgat gttaccttca ttatctactt taatagtagt accgtcagtt
     8401 ttcgcttcaa cgttataagt agttgaacca tcagcattcg tgctaggtgt gatagttaca
     8461 cctcggttac cgcccacttt cgtagtagct gcattagttg ccgcttgtaa atcacctaag
     8521 ttcactacgt tgtttagctt gtcgccttca gcatttttaa tcgcttctgc acggtcttta
     8581 ccctctgggg ttgagccatc ttcgttacga acactacttg ccacattgcc taattgaaca
     8641 ggggcttcac ctgtgaattt agccgtattg cttggcgttg agctatcagt aggatcttgg
     8701 tttacaaact caatcgggct atctacttta atcgtattct taccgtcttt gttttcaacc
     8761 gtgaccgttg tacctttacc gttaataaaa tcaaccgtgt cattatgtac cacagtatca
     8821 accgctttgc cgttaccttg taaattccag cctgcattta atacatcacc taatgttgct
     8881 gcattactta acttatcagc taagttggtt ggattattgt ctgctggttg aaccttatca
     8941 tctgcagtca caggtatcag attagacgca acattgctaa tcgctttatt acctgcattg
     9001 ataccatctt tattgatagt aattggatta tttgcaggat ctgcttcatc agttggtaca
     9061 gttacagtgt tagaggttac gctgctaaac ttaacatcat ctttagtcgc ataaatgact
     9121 ttaccatcag cttcttgctt cacagttaag tttttacctg caaccatttc aactgcttta
     9181 cccggattaa tcagttcatc accacctgaa agcttctctc caccttctac agccgacgtt
     9241 ttcaacgtaa agcctgagtt attgatggcg ttggtaatat cacctgctgt cactaatttc
     9301 ttagcatcat cagcggttgg ttcatcaatt ctaccgtcat tatttgcatc atttaatgcc
     9361 gtagtgttag ccttgatcgc accggttgta ggatctttta caattgttac atcgtccgta
     9421 ttcacagaaa gatcgaacac attcgcgcca tcagcatttt ttgtcgtgtt aaccgtaact
     9481 gatttatcag tcgacttcac ttcttcacga gatgccatag cgaaagtata aagctgacta
     9541 ccatttactg catctttact atctgcattt acgtcaccgg cagctacatt agttactttg
     9601 actgcattac cgtctttgtc accaacattg atattaccac cattgttagt aatcttagga
     9661 ccttcatttc cgaactgtac actatcaaaa ttcacatttt ttgcagttga aacagtaatg
     9721 ttattcccat cacgggtaat ctcaatgttt ttaccattta agaactgaac cgtatcacct
     9781 gttttcacca ggctcttctc gtcaccgttt gctttaatgt taaaacctgc attgttaatt
     9841 gcatctgcaa cggttttagc tgttactaat gcatttggtt ctgtaggctc ttccacttta
     9901 ccatcagggt tatttgttaa ctcgctggtg tttgccgtga tttcgccctt atcgtttacc
     9961 ttaatggttg taccatccgt ttttgcttca acggtataag tggttgagcc gtcatcgtta
    10021 gttttagatg ttacagtaac acctttatca ccttccactt tggtggttgc tgctttcatt
    10081 gctgcttgta catcacccac attcacagca ttattcaacg tatcacctgt tgcgttgtta
    10141 atattatccg caatcgcttt acgctctgca tctgttggtg ctgctttatc tgcaaatgta
    10201 ccacccacgc cgctcttcag attagtgatt gagcctgttg tatctggttt accattgctc
    10261 atatcaatgc tgttgaatgc aacattatct ttcgttgtgt aagtgaattt accgtcagct
    10321 tgggtaagtg tcatattttt acccgcatca aaggtaactg tttcacttgg cttgattagc
    10381 tgtgttttct tacctttggt ttcaccacca tcaacaccat cacctgctgt tacattaaag
    10441 cctgaattat tgattgcatt agcaatatca cctgccgtca ctaatttctt agcatcgtca
    10501 cctgtaggct cagtaacttt accttcagga gaattattta atgttgtggt attcgcttta
    10561 acttcgcctg ttgtcggatc tttcacgata gtaacgttgt cagtattcac tgtcatatta
    10621 ccgtcattat cacgaccgat agatttatcc gttgcaacat ctaccgtata ttcagtattg
    10681 cctttatcat cttcctttcc ggctttaaca gttacggctt tagaaccagc tactacagat
    10741 gaggttttct ctgaattatt aattgcatca gccacattac cacgagttac tgtaggagca
    10801 cctgctttcg ctacatctac cgtatagatt gtttgaccat tatcacctgt ttcaggtgca
    10861 ccaacagttg ctaaacctga acctttcact tcggttttgt gacgctgctg cttgttttaa
    10921 ctgacttaca ttcaccgcat cagtatcagc ttcacctgct ttcacgcctg taattttggt
    10981 tggattacca tcattacctg caatattaac attaccatct ttattcgtga ttttcgggcc
    11041 attatcacca aatgttacgc tatcaaattt cacatctttc gctgtttcgt acgtgaatat
    11101 agtgccaaca cgtttaactt ttaagttatc gcctgctgca aaaatcactt tttcgcccgg
    11161 attaatcaac tctgctgctt cttgatcacc atcagcttta ttgccaccag attttgcatt
    11221 ccaacctgct ttttgaatcg cttcagaaac tgtttttgta gttgcaactt tatcttcttc
    11281 tgcaggtgta gttactgcac ctgttgtgtt atcaaccgtg atagaaccgg tatccacatc
    11341 aaaggttact ttacgccatc agcttcttgt gtaacatttg aaactgtacc tttaccgttt
    11401 acaaattgta cagattcatt tggggtcact gtgcctttgg tttcacccgc attatcttta
    11461 atattgaaac cttggtttac atagttattt aagttcgtaa ttgcatcgcc aacgtttgtt
    11521 gcagtattac catactgagt tccagctgca ttcgttacat tatatttagg ctgagtcaca
    11581 gagccatccg gattcacaac agaaccgcca ccaaaattat ttgcagttga atttgcaagg
    11641 ttactggttg cattcattgc catataaagt tgtgaaccat taatcgcatc ggttgatgta
    11701 gcagaaatct gacccgctgc cacattttgg atttgacgct ctttacctgc agagcctaca
    11761 gaaacaacat agttagtatc tttatttacc ccggcaaagc cattataagt aataccccct
    11821 accgttgcat tttcagttgg tgttgctgcc cttacgactg attcgctacc caaagcaaca
    11881 gaactattca gagtagcttg agctcccata cctaatgctg tagcaaattg agctgttgca
    11941 ttagcacgtg taccaacagc cactgctgat tgtgctgagg caattgaatt tgcacctacg
    12001 gctaaagagg catttgcact cgcatttgct gcaacaccaa aggcagaagc tttttcagcc
    12061 gttgcattag cattagaacc taccgctgta gcatcacctg ctgtcgcatt tgtttggcga
    12121 ccaagtgcgg ttgtaccatt agccgttgca tttgctgaat gaccaactgc cgtagcttga
    12181 ataccttttg aaaccgtagc aacacctaaa gataacgctc cgttaccatt tgcatttgag
    12241 tttgtgccta atgctactgc cgcttgctct ccacctgttg ccgttgcatt cgggccgatc
    12301 gcaattgagt ttctgctctt cgcgccatca ttagcttgat tctcaggtac ggttgaattc
    12361 acagagaaat attgaatttg gcttgcttgc gcaggaatat tgacagaaag atcataaata
    12421 accgtgccat ttgcatttct ctctgtactt tttacagtta ctgtaccatc gtttgaaaca
    12481 acagtagctt gggtatcttt cgtaaagtca tcaatggctt tcttagttaa accaatttca
    12541 tagttagttg tattcgcagc agttgcagct ttacctgtta cagtaatgta atcagggcta
    12601 gaagaatttg ccgtggtgtt atacgcattt actgtataaa tagtttgccc atttgcaccg
    12661 gttgcatttg taatattaac attgctacct gcaacaactt ctgtttttac cgcttttaat
    12721 gcttcttcaa tcgtattttt atttgttcca ccaatattag tataggtaac agaaccatca
    12781 ggctttactg tagcattacc acctaaaata tttttagttg aattagcaag gttacctgtt
    12841 gcgttcattg ccatataaag ctgtgaacta ttaattgcat cggttgatgt agcagaaatc
    12901 tgacccgctg ccacattttg gatttggcgt ttgatcgtgt ttgagccaac agaaacaaca
    12961 ttccctgctg ccgtagtatt agccgcaaag ccggaataag taataccatt taccgtcgca
    13021 gaaggaactg ccacagcgtt ggaaacggtt gaattactcc ctaaagcaac cgaattattt
    13081 agcgctacat tagcacctga gcctaaggca atagcaaaac cggcacttgc tttagcacta
    13141 tcaccaattg caaccgtaga ttggttggaa gatactgcac ttacccctaa agctgtcgca
    13201 ttaacacctg aaactgtcgc attataacca atcgctgtac ctctagttgc agtagaagtt
    13261 gcattagcat tagcacttga acctaaagct aaagaataag tagcatttgc aacagactta
    13321 tcccccattg cacctgaacc cattgcaaat gaacgagtgc cactagcggc agatctccat
    13381 cccattactg ttgaacggtt accagtagct agagctcctg caccaaaagc tgttgcacgg
    13441 ttacctgttg cagcagtatc cgtacctaat gcaatagcat ttgctgaagt cgctctagcc
    13501 cccataccaa tagcaataga aggaactaat gcccaattct gaccagtgtt attgagactc
    13561 tctacaccaa tattatagta atgtaagaag tatcttctgg atccactaaa tttgttctat
    13621 gcgttgcatt cgtatctgta ccaattgcaa tagtagatct gccagttgag attgaatccg
    13681 caccaatagc aattgcgttc tccgatgatg cagttgcttg tgttgaaata taattacttg
    13741 ttgttgaacc tataagatac aacagccaca gcatcattag ctcccaacac ggcactagct
    13801 ccagccaata aagccaatgt tgccttactt gcagaactaa cagatttcgt tttacctttc
    13861 gctcgttgta attcagatac tgcaacccaa ctttgtgttg cctgattcca aataacttta
    13921 aaaatttgat tcataatcga ccctatataa aaataaaaaa gattacgtag aacctatgtt
    13981 caacataatc ttcaccaata taaaaaaccg ccacctattt aagtgaaata acttacttat
    14041 agactcagaa atttaagtgc gcgtatttta cgctatttgt aatataattc atcttctgga
    14101 gtgtaaattt attgtaaata atacgaggaa tctaaccgct tgttataacg caaaacacct
    14161 tgacttaaat caagccacta cctcattttg aggggagatt tatacgcagt gaaattttaa
    14221 aataagctaa ggtttacgga taatcgttca acactattga attatcactg tagttatcgt
    14281 taaaaaggta tgcttttatg aaccaattct tccctctaat ctttagctta actctatttt
    14341 ccggcgtaac tttggcacta gaaaaagcac ctcgaactat gccgacagaa ggaataaata
    14401 agcccctact tggacaaatt ctattctttg acaatatgct gtcacacaac ggttcacaaa
    14461 actgctccag ctgccataat ccggattatg cctttattga taaccgcact actccggcaa
    14521 aaggggtggt ttcacaagga gatactccaa ccaaattcgg caaacgcaac tccccgacca
    14581 tgctttatgc gaaatactcg cctgagttcc actttgatga gcaaagtcaa gaatatatcg
    14641 gcgggcagtt ctgggacgga cgagccaaaa atctcgccga gcaagccggt atgccgccta
    14701 tcgacccaaa tgaaatggga atgcctaaca aattagaagt agccaaaaga ttatataatg
    14761 tgccgatgta tcagcgattt ttagggcaat tttacggtga aaaggtatgg gaaagttatg
    14821 aaagcgttta tgcggcaatg gaagatgcga ttgcgacatt ccaacaagaa aacaaacttc
    14881 tcgctccatt tgattcaaaa tatgatctat ttttaaaagg cgaggtacaa ttaactgcat
    14941 tggaagaaaa aggcagagct ttatttttca ataaagctca aactaattgt agtagttgcc
    15001 accaattaca gagtgctgca aaccaccaag aagaaacctt tagcaactat cactattaca
    15061 atgtaggcgt acccggtaac ccagacttga tagcggttaa cggcttcgca ccagacttcg
    15121 tcgatttagg cttatttgaa aacccaaatg ttaaaggtga tgaaacacaa aaaggcaaat
    15181 tcaaaacccc aacattgcgt aatgttgccg tgactgcact ttatatgcac aacggtgtgt
    15241 ttaaagaatt aaagactgtt ttgctgtttt tagacagcta caataacccg gagcgaaaaa
    15301 tcaaccctga aaccggcacg gcgtggcaac aagcagaatt tgaacccact atcgcccacc
    15361 aaaaactcaa agccaaaccc ttaagcgatg aagaaattga tgccctcgaa gcatttttaa
    15421 aaaccttgac ggatgagcgg tatagaaaat aaggctacaa gcggtaaaat tttggggaaa
    15481 ttttaccgct tgcgtttaac taccgtgtta gctcactttc taacttttcc aatgcctgca
    15541 aatcttccca atctgcctct ttctgtttta aacatttacg ctgaatatca aatttttcgt
    15601 attgctctct gacaaagctt tccatttgtt tatgcgtgat tgttccacca tttcctaata
    15661 cagaaaagcc gttaaactca atcaacatat ctacatttct tcgccagaaa cctaacgtaa
    15721 gatcttggtt gttcttcaca cgtaattcgg cactttcaag aaagatcatt accaagcgat
    15781 ttaaagaatc cagctcatta ttatctaaat agtttttcgc aatcacaata tcgcctttac
    15841 gcacgacttt tcctttccag ctagttaatc ccatattcat cttagtcgca tcagcacgtt
    15901 gacaaatcaa ctcagcggca gtgtgtttgg ttattgcata aatgagctta ttttgcgttt
    15961 ctgcaaaaaa catttgcgta tttttatctg ttttgtcgta atcgctagag agtttgaaaa
    16021 gctctcgtac tttttgatag aaacgcaatt cacttgcccg aatctcacga atctgttcaa
    16081 gtaattcatc gaaataatct aaacgaccct gcggattttt caaacgctcg ctatcaatta
    16141 aaaaaccttt ttcgagataa gtgcgtaatg tgctgtttgc ccattttcta aactgtactg
    16201 ctcttgggct acgaactcga aaccctatcg ccagaatcat ttcaagtgaa taatgtttta
    16261 cttgataatt cttgccatct tgagcagtta tcaagtaatc cttgataact gaattctcat
    16321 ctaactcttt gtcttttaag atatttttaa tgtgttcgga tatattttgc acagaggtgt
    16381 caaaaagttc tgcaagttga ttttgtgtca gccaagcttc attttcaacc actaacaagg
    16441 ctacattgct tttgccgtct tccgtattat aaataattaa atcgttcata ttttattctg
    16501 tttattggta gagatattag tcgctatttt caataaaaca tgtataaata tccagaattg
    16561 attttgaatt tttcgatgca gatcacaaaa atagagagtt atacaaacaa gcggtaaaat
    16621 tttgtaaaaa atttaccgct tgtaaaggtt acttatcagc taatttggca agtagttttt
    16681 gatgaatacc gccaaaggct ccgttgctca tcactaagat gtgatcggtg ggtttggctt
    16741 ctttgacgac tagatcgact aaatcatcaa tatttgccga ccaatacgcc ggttgcgata
    16801 acacattggt aatctcgctc acactccacg caataatatc aggctggtaa acaaacactg
    16861 cttcggcatc gtgtaggctt ggggctattt catctttatg gacacccatt ttcattgtat
    16921 ttgaacgagg ctctaacact gccaaaatgc gttgattttt gccgacttta ccacgcagag
    16981 catcaatagt cgcttctatc gcagttgggt ggtgagcgaa atcatcataa acggtaatgc
    17041 cgtttacctc gcctttcact tccaaacggc ggttagcatt cacaaacttg cctaatgcct
    17101 cgcaagcccc ttgcacttca acccctgcgt gatgagcggc ggcaatcgcc atcagagcat
    17161 tatgcatatt gtgcttgccg ataatcgacc aatgcacctc gccttgttta acgcctaagt
    17221 gaaacacctc aaactgtgag caatcggcat ttaacggttt agcaaaccat tcgttctgtt
    17281 cgccaataaa ttgaagctgg ctgtaactgc ccatttttag tgtatcttgc acgttttgat
    17341 cagcgattgc cgacaaaata cagccacttt gtggcatcgt gcgaacaagg tggtggaact
    17401 ggcgttgaat cgcttttaaa tcatcaaaaa tatcggcgtg gtcaaattcc atattattga
    17461 taatcagcgt tttcggggtg taatgcacaa atttagaacg cttatcaaag aacgcagaat
    17521 cgtactcgtc cgcctcaatc acgaagaatg gactgttacc ggcacgagcc gaaatgccga
    17581 aattaccggc aacaccgcca attaaaaagc cggtatcaat cccattttgg tctaaaatcc
    17641 acgctaacat tcctgttgtg gtagttttgc cgtgcgtgcc ggaaaccgcc agcacccatt
    17701 tgtctttaag caaatgatcg tgcaaccatt gcgggccgga ggtgtaattg agttggttgt
    17761 ccaacacata ttccacgcac ggattaccac ggctcatcgc attaccaatc accactaaat
    17821 caggagccgg ttgcagttga gcaacatcgt aattcgggat aatttcaata ccgtgagcag
    17881 ctaaaaaggt actcatcggt gggtaaacat tagtgtctga gccggtcact ttatagccaa
    17941 gctcacgggc aatcattgcc acaccgccca taaaggtgcc gcaaatgcct aaaatatgga
    18001 tatgtttttt catcttttta tatttaaaat gttagaatca tcccctctcc ccttgtggga
    18061 gagggataga ttttttcttc gtgcagaaga aaaaatcagg gagaggggta agcggtcatt
    18121 tttaggctta atattgtaag ctccctctct ctgaaaaata tttctgaacg aaatattttt
    18181 cggtctcaat actcgctacg ctcgctcctg tggagccgtt ggcaaagcca acgttcaaat
    18241 gtaaacattt gtcccacaag gggagaggtg cgctttagat gaggcgtacc atccctcgtt
    18301 cacatcaatt aatcaatatt cttcaactct tcttccgaaa gctgctcttg ttggctttgc
    18361 tcaacattgc catctttcac tttaaattca aggttttgga aataagcttc acggaaggta
    18421 acataagggt cttgagcttg ctctaacaac gcatcttgtt ctaataattt agaacgggta
    18481 tctacccctt gtaccacaaa tttagcgata gaccaaggtg acccaacata agtcagcacc
    18541 gaataaccgg tttccaccgc actaccaata ccttgacgag gtgtggttgc tccataagcc
    18601 ggcatcataa tataggagcc ggaaggcacg ccgtgagcgc ctaaactctc acctaaacca
    18661 cgttgtccgt tatttaaacg taacccctca tctaaactcg cccagtcaat taacccacct
    18721 aaaccaaaca cagtgttgat ccagaagcgg ttgaagtgaa ccatcgcttt tttaccttct
    18781 ccttcaatta agcggtttac aaagctcacc ggctcatcaa ggttattagc aacattaatt
    18841 aagcctgttt taaccgggct tggtacatac tctttccaac ctttagctac cggttttaac
    18901 acataagggt ctaaatagtc gtaattgact ttccacatcg cacggttaaa cccctcaagt
    18961 gggtcgtctc gcacgccggt ttctgggtta atgcttgatg aacaagcggt taaaaatgcc
    19021 acactgagta gcataaacat cggtttgaac gacttgagtt tcataaattg aaccttttgc
    19081 agagaaattt gtccattgta gcgaagttga taaaaaatac aaaacaaaaa gccgttttgc
    19141 ctctagaaat ctagacgtct agattgagat atagttcgct tttgattaca atacaggcaa
    19201 catttaagga gcaaacaaat ggcagactgg aacggcgaat atattagccc ttatgccgaa
    19261 cacggcaaaa aaagtgaaca agtcaaaaaa gtgacggtat ccattccaat taaagtattg
    19321 gaaattttaa ctaatgagcg aacccgtcgc caaatcaaaa atcttcgtca cgcaaccaac
    19381 agcgaattat tgtgcgaggc ttttttgcac gcctttaccg gtcagccttt gccgaatgat
    19441 gaagacttga tgaaagacag ggcagatgaa atccctgaag cggcaaaaca aaaaatgtgt
    19501 gagctgggaa tagacccgga cgaatggcaa tattagacac accttgcaac tgcgaggttc
    19561 tttttatgtt ttaaggagac tttatgtatc aacaattaac aacagaagca cgttgggctg
    19621 tgttgcttac gctgatttat ctgctcggct gggtaggttt tgcttacttt tcaccgcaag
    19681 gcagaggcat tttcggcttt ccgatttggt ttgaactttc ttgcattttc ttacccgtac
    19741 tatttagctt agttgccacc attgtcgtca aaaaagtgta taaaaatatc gatcttgagg
    19801 tgaataatga atagtgaaat gattttaccc ctgattgctt atttaatttt tgtgtttggc
    19861 gtagcgtttt atgcttaccg taaacgccaa ggcggaagct ttatttcgga atactatatc
    19921 ggtgggcgtt caatgtcggg ctttgtgtta gcaatgacaa ccgccgccac ttatgtgggg
    19981 gcaagttcct ttatcggtgg gccgggtgct gcctataaat acggtttagg ctgggtgtta
    20041 ctggcaatga ttcaagtgcc cgcagtgcta ctctctcttg gagcattagg caaaaaattt
    20101 gccttacttg cccgcaagca taatagtgtc accattaacg atatgttatt agcccgttac
    20161 caaaacaaat ttgtggtttg gattgcagga ctagccttat tactttcgtt ttttgcgatg
    20221 atgacggtgc aatttatcgg tgccggtcgc ttacttgaaa ccacactcgg aatcccttac
    20281 caaacagcgg taatgatttt tgccatcaca gtcgggcttt atacctttat cggcggtttt
    20341 agagcggtgg tgctaaccga tactattcaa ggtttagtaa tgatagtcgg cacaagcatt
    20401 ttactcgctg gtgtgattta tgccacaggc ggagtggaaa atgcaatgca cacccttgaa
    20461 gccattaacc cacaacttac caccccttac ggcattgacg aacgcccgct tgatttcacc
    20521 tttatgactt cattttgggt attggtttgc tttggtttaa tcggcttacc gcatattgcg
    20581 gtcagaagta tggcatgcaa aaacagccaa gccttgcacc gagcaatgat tatcggcacg
    20641 gtagtcattg caattctaat gtttggaatg cacctttcag gcgtattagg cagagcggtt
    20701 gtgcctgatc tcaaagtgcc ggatcaagtc attccaacac taatggtaca agtgctacca
    20761 ccggtggttg ccggtatttt ccttgccgcc ccaatggcag cgattatgtc ttcgattgac
    20821 tcaatgttga ttcagtcgtc ttcaacctta attaaagatc tctatctggc aattaagccg
    20881 aatgccatta ataacgagaa aaaaatcaaa ttgttctcca ctattactac tcttactttt
    20941 acggtattac tcgtgtttgc cgccctaacc ccgcctgaga tgttaatttg gctgaaccta
    21001 ctctctttag gtggtttaga agcgactttc ctatgggtaa ttgtactagg gttgtattgg
    21061 gaaaaggcaa atgccaccgg tgctatttac tcaatgctgg caggcttaag ttgttatgta
    21121 ttaatgacta cctttaagat tgctattttt agcttccacg ccattgtgcc ttcactgcta
    21181 attggtttga ttgctttctt aatcggcaac cgatttgctc ctaaggtgta aaataaaata
    21241 ggcatagtgg tatggaagtt cactatgcct attttgcaaa atttccgctc aattcaaccg
    21301 cttgtagtta ataagtggca ttattttctg gattattctg cttagtcgcc attctaagta
    21361 acgtataacc taaaatcgct gaaaccgcag agccgagtaa aatacctaat cgagctagag
    21421 cggtaatact ttccccagcc tcacttacat caaaggcaag acttgctaag aacatcgaca
    21481 ttgtaaaacc gataccgcat agcaccgcaa tggcaaaaat ttgcttaaaa ttaacccctt
    21541 gcggcaggct ggcaaggcgg aataatactg ctaaataact aaaaccgaat acacctaagg
    21601 ttttgccgat aattaagccg agcgcaatac ctaacggcaa tggtgatgag agttgctcca
    21661 ttcccatttc taataagtaa acgccggcat tagcgaaggc gaagatcggt aaaatcatat
    21721 aagcacacca aggggcaaga atatgttcta gctcctctgc cggtcgttcc ccatgtttac
    21781 ctttcagcgg tacgcagaag ccgatgatca cgccggcaag ggtagcgtga acccctgatt
    21841 ttaaaacgga agtccatagc actaagccta ctaccaaata agcacagagt gaggtcactt
    21901 taaagcggtt aagtagcact aagccgataa tcgcaatcgc ggcaatagtt aaggcttgca
    21961 cactgatttc ttgcgaatag aaaatggcga ttaccacaat cgctcctaga tcatcaataa
    22021 tcgctaatgc caacaaaaat gcctttaaag ccaatggcac acgagtgcct aataacgcca
    22081 caatgcccac cgcaaaggca atatcagttg ccattggaat tgcccaacca ttatgatatt
    22141 cagggtggtt ttgattaatc gcccaataaa taatcgctgg aacaatcata ccacctactg
    22201 ctgctatcgc aggaaaaata gctttcttat aacttgaaag cgaaccttca aacaactctt
    22261 tttttacttc cagccccacc aacgtaaaaa acactgccat taagccatcg ttaacccaga
    22321 gtaatagcgg tttattcaag gcaaattcac caaactgtac actaacaatc gtttgtaaaa
    22381 actcaaaata gaaatcactt aaggaggtgt tggcgcacac aattgctgca aaagcaaaaa
    22441 ccagaagcaa tacgcctcct gaggcttcag attttaaaaa ttcttttaat ttttccactt
    22501 aactttctcc tattaatatt tgtttattgt attttcattt ctatacattc catcttttac
    22561 caaaaatttt gcgaagatca aatagaaaat ttgataaact agaactaact cgcattttat
    22621 tgctccatat gattagaaat taacctaaaa tattaaaatt ttgttatgac acacgattgg
    22681 ctctattggg cattagcctc tgcacttttt gcagcattaa ccgccatttt tgccaaagtt
    22741 ggcttacaag gcgtagattc tgatttcgcc acttttattc gcacggtagt tattattatt
    22801 gcacttattg cctttctcac ttacagcgga aaatggcagc cgttagatag cttgagcagc
    22861 aaaaactggc tgtttttaat cttatccggc ttggcaacag gattgtcttg gtcggcgtat
    22921 ttcaaagcat tgcaaatggg taatgcttcc caagtcgctc caatcgataa attcagcttg
    22981 gtgttagtta ccctttttgc agtaattttc ttaggcgaac gcccaagcgg acaagattgg
    23041 cttggcattg gcttagttgc tggtggcgta ctgttacttg ccttcaagcg gtgattttta
    23101 tgcaaaattt tgcaaatatt gaaattgcgt ttattcatcg gaaagcacct ctgccgagtg
    23161 atttctccta ccctgaaatg cccggcggtt taactgaaaa acaggtgcaa aaatggcaaa
    23221 gccgccgagt cgcctttttt ctgctgacgg aattgtttaa aaaacaccat ctggatttag
    23281 atttattagc tgatatgcaa cgctccccaa gcggtcgcac ttttgtcgat tctgagcaaa
    23341 ttgactttaa catcagccat tcaggggaat ggatagcggt cattttttcg tattcttttg
    23401 caaaattagc ggtcggcatt gatattgaac acccacaaaa aatcagacgt taccacgatt
    23461 taatctgcca ttacggaaac gctgaagaac aaaatgtttt attagccaac cactccccca
    23521 ttctaagcaa cctcgccgaa cgcttttatt tgagctggtg cttgcgagag gcgatattga
    23581 aatcgcaagg ggtggggatt gtgaaactgt ccgaagtaaa acatttaccg ttagaaaaac
    23641 agatcttttc cgcccattgt ccgaaaggca agctgcattt tgtgagcgaa ctgccgttct
    23701 atttaagcta cttctatcaa caacctcaaa atatgctatt atctgaacct ttgctatacc
    23761 attggcaaaa cgggcagttt cagcctataa agtgccaatc acttgtttat gatgttaatt
    23821 aaggataacg aatgcctaaa aaatctttag aagaacacca ttccagtttt ggcaaaattg
    23881 cttccgaaac ctttcagtgg attatgaata ttgccttgct agtaacagga gcattgcttt
    23941 cttactcgct gtttgctgaa gcctattcac tctatgaact ttcctttagc gacagtgaga
    24001 aattccaaat tgtagaaaaa atagtaattt tctttctcta ttttgagttt cttgcgttga
    24061 ttgtgaaata tttcaaatcg aattatcact ttccgttacg ctatttcctc tatatcggga
    24121 ttactgccat ggtgcgtttg attattgtcg atcattctaa tgcgttgcat acactattat
    24181 tcgcactctc tattttggtg atgattatag cattatatat tgtacacacc gatcgtttac
    24241 ataaaagcta ggaactaata tgaagctaac ccaatatcag cacaatgatt tacagattct
    24301 aaaccgagaa accgtctata aagggcattt tgagctacaa aaaatcactt tccgccataa
    24361 gctgttttcc ggtgaaatga gcggtgaagt ggtgcgtgaa ctcttaatta aaggcgaagc
    24421 ggcggcttta attgcctatg atccaacctt agataaggta gtattaattg agcaagtgcg
    24481 gattggagct tacgatgcag gacagaaaaa atccccttgg ttgctggaat tggttgccgg
    24541 tatggtagat aaaggcaacg aagagccggc agaagtggca atgcgtgaag ccaaagaaga
    24601 agccggcttg gaagtcacaa cagtgcaaca cgccttaagc gtatgggaca gtcccggtgg
    24661 acaactggaa cgcttgcacc tgtttctcgg cttgattgac agcacccaag tgaaatccgg
    24721 cgaggtacac ggcttactgg aagaagaaaa tgaagacatt ttggttcacg ttgtaagccg
    24781 tgaacaggca tatcaatggg tagaagacgg cacaattgac aatgtgattg cggtaattgg
    24841 gctacaatgg ttgcaa
//
LOCUS       DANLVT010000025        24852 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.025, whole genome shotgun sequence.
ACCESSION   DANLVT010000025 DANLVT010000000
VERSION     DANLVT010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 24852)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24852)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24852
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.025"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..322)
                     /locus_tag="PXC99_000872"
     CDS             complement(<1..322)
                     /locus_tag="PXC99_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5417346.1"
                     /translation="MDSTFFLKKYLNHPSFNFPLSLNEVSLIKSGTTPTDRDDNLKEG
                     VVLLKTNDIRNNLLNKYSSVDYFISEDINEKMISSQLKEGDVLVNIVGATLEVVGRVA
                     YVSST"
     gene            complement(421..2424)
                     /locus_tag="PXC99_000873"
     CDS             complement(421..2424)
                     /locus_tag="PXC99_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HDL5417347.1"
                     /translation="MIEKQNYHLVQLLKDSNYQLTQFSPAYIKKLEESIFLKSGKNGD
                     IPHIQCLVRKKDIKLTPEEAVRQLYLMNLHYEYDYPFERMELEYSVVFGREKKRADIV
                     IFDRDNPNAVYIMVELKKPKLKDGKEQLKSYCNATGAPIGVWTNGESISYYNRRDPNY
                     FKDIPDIPNAQQKLSDLLQERWTIQDLIDNDKIAKQRKSLKDLVIEMEDEVLANAGVD
                     VFEELFQLIFTKLYDEMESTRNKSRYLEFRNYGDTESELKAKIQSLFDRAKNKWEGVF
                     AESAKINLSPSHLAICVSSLEEVKLFNSNLDVVDEAFEYLINKSSKGEKGQYFTPRYV
                     IDMCVKMLDPKPEETVIDTAAGSCGFPVHSIFHVWEKQLKARGLERSHLFTAEEKLPE
                     QTDYVKEKVFAIDFDEKAVRVARTLNLIAGDGQTNVLHLNTLDYERWEDFTKEEEWND
                     VYGEGWKKLRKLRKTKNENRDFQFDVLMANPPFAGDIKETRILARYELGKNSKGKQQS
                     KVGRDILFIERNLDFLKDGGRMAIVLPQGRFNNSSDKYIRDFIAERCRILAVVGLHGN
                     VFKPHTGTKTSVLFVQKWHDELCPKVEDYPIFFATMQKSSKDNSGDKIYVKNADGTLK
                     LDNHQHLIVEHDLFNHDNSTQDGIAEAFIEFAKKEKLSFVGKD"
     gene            complement(2532..6248)
                     /gene="metH"
                     /locus_tag="PXC99_000874"
     CDS             complement(2532..6248)
                     /gene="metH"
                     /locus_tag="PXC99_000874"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HDL5417348.1"
                     /translation="MNTQHRTELLQNALTERILILDGAMGTMIQKYKLTESDFRGERF
                     KNSTIDLKGNNDLLTLTQPLLISAIHEKYLAAGADIIETNTFSATTIAQADYELESIA
                     YELNLVGAKLARLAADKFSIPEKPRFVAGILGPTNRTCSISPDVNDPGFRNITFMQLV
                     EAYAEATRGLIEGGADLIMIETIFDTLNAKAAVFAIETVFDELGVKLPIMISGTITDA
                     SGRTLSGQTTEAFYNSLRHAKPLTFGLNCALGPKELRPYVEMMSKISETFVSVHPNAG
                     LPNAFGGYDLGAEEMATYIKEWAELGWLNIVGGCCGTTPEHIQAFAEATKGVAPRKLP
                     EIPTAMRLSGLEPLTIDDNSLFVNVGERNNVTGSAKFKKLIKEEKFAEAIEIAISQVE
                     NGAQVIDVNMDEALLDSKKCMTRFLNILATEPEAAKVPIMIDSSKWEVIEAGLQTVQG
                     KPIVNSISLKEGEEKFIHQAKLCRRYGAAVVVMAFDEVGQADTEERKVEICTRAYRIL
                     VDQLGFPPEDIIFDPNIFAIATGIEEHNNYGVDFIQACERIKRDLPHAKISGGVSNVS
                     FSFRGNNVVREAIHAVFLYYAIKAGMDMGIVNAGQLAIYDDLDPELREAIEDAVLNHR
                     HDTTDRLLEISEKYRGVKVESADESAAEWRNLPVAERLKHALVKGITTYIIEDTEEAR
                     QQFASPLEVIEGPLMAGMDVVGDLFGDGKMFLPQVVKSARVMKQSVAYLEPYINATKQ
                     KGSSNGKMVIATVKGDVHDIGKNIVSVVLQCNNFEVIDLGVMVPADVIIETAIREKAD
                     LIGLSGLITPSLDEMEYFLGEMNRLKLDIPVLIGGATTSKEHTAIKLYPKYNYPVVYT
                     ANASRCVTVCATLMNPEAKAEFWEKTKAEYEEIQRKFAVRKPLRNGLSIEEARANRFD
                     GFSGEWADYVPPTPKQTGIIEYKNVPIATLRKFIDWSPFFMLWGLMGGYPDAFDYPEG
                     GEEARRVYNDAQRVLDEFEQNGKLNPSGIMGIFPAVREGDDIAILNEDRTACIGKSYH
                     LRQQSERGKNSKSPYNLCLSDFIADRESGQQDWFGMFAVCAGIEEHYLVESYKAAGDD
                     YNAILLQAVGDRLAEAMAEYLHFELRTKVWGYTVEDEDNGRLIREEYIGIRPAPGYPS
                     CPEHTEKQIIWDLLEVEQRIGMKLTESYAMWPAASVCGWYFTHPTSNYFTLGKIDEDQ
                     VLDYAKRKGWDELTAKKWLSVAMKQDVKSQAENI"
     gene            6414..7697
                     /locus_tag="PXC99_000875"
     CDS             6414..7697
                     /locus_tag="PXC99_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5417349.1"
                     /translation="MTACHEPKRSIWQQIFTKNMLLCVYTGFCSGLPLFVLIQLMPAW
                     LTSANLDIKTIAAFTLTSLPYTWKFLWAALLDRYFPPFLGRRKSWIFISQIGLLVILA
                     SFGLFNPVQDISIIVTLSVLLAFLSATQDIVVDAFRREILSDNELGLGNSIHVNAYRI
                     AGLIPGGLSLFLADHYAWDTVFLITAAFLVPCLFVTLIIAAEPNHKPIDRSKPFYMAF
                     VDPFKEFFTRKGVAGAIGLILFIFLYKLGDSLATTLQTKFILDMGFTKSHIAGIVKIT
                     SLWCSIGGGIIGGVAMLKLGVNRALWLFGFVQLITILGFAYLASFEHFPTESIGAAEL
                     WKLGLVMAGEYLGVGLGTAAFVAFMARETNPAYTAMQLAIFTSLAALPSKMLGAYTGH
                     LVEMMGYYQFFWLCFFIGIPGMLMLFKVAPWGQAE"
     gene            8041..8709
                     /locus_tag="PXC99_000876"
     CDS             8041..8709
                     /locus_tag="PXC99_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5417350.1"
                     /translation="MAHNGSGKSTLMRLLSGDITPTSGSILVDGLPLHQLSTKEAAKH
                     IAYLPQRLPEAADFLVQELVALGRFPYQKWLQKPTEFDVQIVEQAMESTSVTQFAKQP
                     VNSLSGGEKQRVWLAMCLAQQTPYLLLDEPLAALDIVYQVEVMQLIRKLVNEQGLTVI
                     IIIHDINLASQFCDEIIALKQGELCIQGSVDEIMQEQKLLEIFGLKLHLFNHPAGLHK
                     VAVL"
     gene            8706..9587
                     /locus_tag="PXC99_000877"
     CDS             8706..9587
                     /locus_tag="PXC99_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5417351.1"
                     /translation="MMFRQYKRFIFLFILQISTAFAQPNIFTPDWSIASALTEMGNPP
                     IAMGDKRIYPLWSHRPIQPNSVLDIGARYQPNRELLAQLPVELVLSNFFYAHLASVYP
                     KEIPQIDVLFDGGNTEPQQHWHTYQKATRMIGTEIKNPNAAEAYLTKTEQTLAQWGKE
                     ILNSNPDIDYYSVVQFGSPRELRIYASNSMFRVAFDLMGLKQADLGVGDRWGNKLIPV
                     SDLAKLPERTCLIVISPFSKMTQADLENSYIWQRLGFGKNRCMKVLPPVWLFGGADSI
                     SHFAEFLHNAMTQGEKE"
     gene            9587..10402
                     /locus_tag="PXC99_000878"
     CDS             9587..10402
                     /locus_tag="PXC99_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDL5417352.1"
                     /translation="MKSSFLLIGCILLSLVTAVIRLNMVWEWEWQLLLINVDLLPINQ
                     AAVKAALLPEMTTSFLAGGLLAIASSGLQHIVRNNLASDSTLAVSSGAQLALMIAVIF
                     FPAAELFSSFWIALLGSLAAIVLVLFIAKASKLNPLTLILGGLIVNILFGAIASLLTL
                     FYFDFLFGVMVWGSGSLLQDGWATSITLAITVVVAFFIFVLLSRPLTILSLDDEQARR
                     LGAPVNLLRYLVIFVCAAITALVVSKIGVIGFIGFAVQVWLILPKYDIYYFAS"
     gene            10399..11535
                     /locus_tag="PXC99_000879"
     CDS             10399..11535
                     /locus_tag="PXC99_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5417353.1"
                     /translation="MIAFLAGGFLLFFTNNLIGIVSRIYDTLLPVGAFTATLGAPLLI
                     FLVLRQRKAQFEASNTAYFPVKRLNSWKLPILLLCAGVILFCLLQIIAPTMNGWAISI
                     DENLMSSYRLPRSLSAIATGAMLAVSGSLLQILTRNPMASPEVLGVSSGATIAAVLSF
                     LLFPTLSSISFLLFGVLGSLTVLALIMWLSRKLQPSALMITGVAIGALVSGLMAIIQL
                     SGSPRLTAVISWLSGSTYYANPNTVWILLSVAILLISATLLFIKPLRLISLGETVSYH
                     LGLEVKKVQMIVLLLIALMSAASTLAVGPMSFIGLMTPHLAKNLGAITPEKQIPISAL
                     LGAMLMLIADWLGRYLIFPYEIGAGIIASILGGIYFLLLLKQHK"
     gene            11563..11961
                     /locus_tag="PXC99_000880"
     CDS             11563..11961
                     /locus_tag="PXC99_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL5417354.1"
                     /translation="MNTLSKAIKLALYSSGIGFISTAYAETVTHLDTVEVSAETPNAS
                     SEETGRYAQKKAKGSNGMALSAKDTPQSVTAVTHQQIRDQNLNTIAKALEATHGVSVS
                     LLDRGRYSFSARGFGIDKVKVDGMDLKVSK"
     gene            11996..13699
                     /locus_tag="PXC99_000881"
     CDS             11996..13699
                     /locus_tag="PXC99_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HDL5417355.1"
                     /translation="MLYDRVEVVRGATGLTTGAGDPSASVNLVRKRANSISRYTILEA
                     GIGRYADFNTMIDHSQALNNSGSVRGRFIAEHKNGNTFIKNEKERYTTLYGNIEADLT
                     DTTKLGLGVSYQKEKRDAALWGGLPAFYSDGGETNWSRSKNASPEWAYWDNESVNYFA
                     DITQKLGEKWELALKGNYRVGKHNSELFYFSGSSLNRQDGLGWSPWPGKFKNDNTQSN
                     VQLDLTGSFSAWGLEHDAAIGIQYNRAHRNSYAADNSTFDGAFDFNNWNGIYARPNWG
                     SMSEKYYQNLKEFGVYVSTRLHLTDRLSMLLGSRISSYRTEGTFYGSTQNFHANDVWT
                     PYAGLTFDINPQNTVYVSYTDIFKPQSQVDINNKLLSPVTGETYEAGWKGSYFNDNLQ
                     TQISVFETRQDNLAQSAGINPNTLLAYYTASKGAKVRGFEVEASGNVTEKLKLSAGYT
                     QWKGDDASGNPINTTQPRKQFKLFATYDMNRLVQGLTVGAGVNWQSRIYTKHATYGEY
                     GQKAYTLVNLMARYQFNDNFSAQLNIDNLFDKKYRNALSFSQYSYGEPFYTRLNLRYE
                     F"
     gene            13811..14455
                     /gene="adk"
                     /locus_tag="PXC99_000882"
     CDS             13811..14455
                     /gene="adk"
                     /locus_tag="PXC99_000882"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HDL5417356.1"
                     /translation="MKVILLGAPGAGKGTQAQFIMNKFGIPQISTGDMFRAAIKESTE
                     LGKQAKALMDEGKLVPDELTVALVKDRIAQPDCANGFLLDGFPRTIPQADALKESGVK
                     IDLVLEFDVADEVIVERMSGRRVHQPSGRTYHVVYNPPKVEGKDDVTGEDLIIRQDDK
                     PETVLERLAIYHKQTKPLIAYYTAEAEAGNTRYERLDGTKPVEEVSAELAKILS"
     gene            complement(14517..15332)
                     /locus_tag="PXC99_000883"
     CDS             complement(14517..15332)
                     /locus_tag="PXC99_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HDL5417357.1"
                     /translation="MSYKVVFSLLFSLFLSTANANWTKINDVNYTWGPFNIYHITLFT
                     ESGTYVEGTRPLMLTLQYKKPWEGRDFAVSLARTWNNLGIKLPEKELDEVITHLRKTF
                     PDIKPEDTLHYIALEDRGYFILNDKVVSDVFNKAFNDAIVAIWLDPKMDISHQLLDPS
                     YKPRAEAESIKPQVEERVAENLQEPIVNTEVSKELKADSQAVEQAPNKIDIPVADKTQ
                     ASVVNEATQPVENKDKKEPEKLEEKPKEMKIENPEVFISPIYDDILMLTKYCV"
     gene            15522..15737
                     /locus_tag="PXC99_000884"
     CDS             15522..15737
                     /locus_tag="PXC99_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HDL5417358.1"
                     /translation="MFPEFRDLITQLKQNNSHFARLFDKHNELDQRIKNMEANIELAT
                     HEEVEALKKEKLHLKDQLYAILKQESA"
     gene            complement(15796..16953)
                     /locus_tag="PXC99_000885"
     CDS             complement(15796..16953)
                     /locus_tag="PXC99_000885"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HDL5417359.1"
                     /translation="MSLDLADIRTQITNLDRNLLKLLAERHRLAFDVVRSKEITQKPL
                     RDLEREKILLQELVNFAEAENYQLDPQYVTQIFQRIIEDSVLTQQNYLQNKLNAQKEE
                     QVSIAFLGMRGSYSNMASRQFAKKYQGTLAELSCHSFNEVFEKVSLGEADFGVLPLEN
                     TTSGSINEVYDLLQHTDLTLVGELAYPIKHCVLANGTVDLAEVDTIYTHPQPAQQCSQ
                     FLAGLDKVHIKYCESSSHAMQMVARLNKPNIVALGNEDGGKLYGLTNIKTDIANQAHN
                     ITRFIVVAKEAVQVSPQVQTKTLLLMTTTQQAGALVDALMVFKNHHIRMMKLESRPIY
                     GKPWEEMFYVELEANIHSENTQKALAELEQVTSYLKVLGCYPSEIIEPVKL"
     gene            complement(17075..19141)
                     /gene="prlC"
                     /locus_tag="PXC99_000886"
     CDS             complement(17075..19141)
                     /gene="prlC"
                     /locus_tag="PXC99_000886"
                     /EC_number="3.4.24.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase A"
                     /protein_id="HDL5417360.1"
                     /translation="MSNPLLNYTGLPAFSQIKPEHIKPAVEAVIKECRETVEKVAQIE
                     NPTWENFYMPQAMAEDKFSRAWSPVGHLNAVKNSPELREAYQACLPLLSEYSTWAGQH
                     QGLYQGYVKLKNSPEFETYSVAQKKAIENSLQDFELSGISLPAEKQKRYGEISARLSE
                     LNSQFSNNVLDATMGWDIVITDEAQLKGLPESALEAAKLSAESKGKKGYRFTLEIPSY
                     LPVMTYCENKALREEMYRAYVTRASDQGPNAGKWDNSAVIDEILKLRHEKAQLLGFKT
                     YSDYSLATKMAENPQQVLDFLNDLAARSKAQGKNELCDLKKFAKAHFGIEHLDLWDIP
                     FYSEKQKQALYSVNDEELRPYFPENRVLSGLFEVIKRIFGMRVEEQKDVDVWHKDVRF
                     FNIFDKNDRLRGSFYLDLYARENKRGGAWMDDCINQKRLADGTLQKPVAYLTCNFNKP
                     IGDKPALFTHDEVTTLFHEFGHGIHHMLTEIDVGDVAGINGVPWDAVELPSQFLENWC
                     WEEEALAFISGHYETGEPLPKAKLEQLLAAKNFQAAMFVLRQLEFGLFDFRLHTEYDP
                     SKQGQVLALLKEVKDQVAVAKGVEWARTPHSFSHIFAGGYAAGYYSYLWAEVLSADAY
                     SRFEEEGIFNPETGQSFLDNILTRGGSEEPMVLFERFRGRKPTLDALLRHKGIVGNAE
                     PVDCTQ"
     gene            complement(19272..20012)
                     /gene="pflA"
                     /locus_tag="PXC99_000887"
     CDS             complement(19272..20012)
                     /gene="pflA"
                     /locus_tag="PXC99_000887"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase 1-activating protein"
                     /protein_id="HDL5417361.1"
                     /translation="MSVVGRIHSFESCGTVDGPGIRFILFLQGCLMRCKYCHNRDTWD
                     LDGGKEITVEELMKEVTTYKHFMKATGGGVTASGGEAVLQMEFVRDWFRACKAEGINT
                     CLDTNGFVRHYSPVVDEMLEVTDLVLLDLKQLNDEVHQDLVGVSNKRTLDFARYLHKL
                     NKPTWVRYVVVPGYTDDDDSAHRLGQFIQGMDNIEKVELLPYHRLGAHKWETLGYKYE
                     LEGVMSPPKEDLERIQKIIESYGHTVKF"
     gene            complement(20261..21286)
                     /locus_tag="PXC99_000888"
     CDS             complement(20261..21286)
                     /locus_tag="PXC99_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL5417362.1"
                     /translation="MSKQDLIRSSVAEYLTFITATGESQVDAVYADENVWLSQKMMAV
                     LYDVDVRTISYHLKKIFSDNELAENSVIQFFWITAQDGKNYHTKHYNLSAIIAVGYKV
                     NSERAVQFRKWATEIVHSFAIKGFAMDDERLKNDGTILGKKYFEEQLARIREIRLSER
                     KFYQKITDIYATAVDYDRTATATKRFFATVQNKLHWAIHGHTAAELIMARANAEKPNM
                     GLTNWKDAPQGKIYPFDVVVAKNYLSDNELAQLQRLVSAYLDMAEDMAERQIPMTMAD
                     WETRLNRFLAATDREILQDAGKVTAEIAKSFALSEFEKYRVKQDLTYESDFDLLVKEV
                     AAKYHAG"
     gene            complement(21521..23845)
                     /gene="pflB"
                     /locus_tag="PXC99_000889"
     CDS             complement(21521..23845)
                     /gene="pflB"
                     /locus_tag="PXC99_000889"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HDL5417363.1"
                     /translation="MTQLTDAQQKAWEGFAAGEWQTEVNVRDFIQKNYTPYEGDESFL
                     AEVTPATSKLWADVMEMIKVENKTHEPYDIDCDTPSTITSHAPGYIDKSLEKIVGLQT
                     DAPLKRAIMPFGGINMVKGSCKVYRRELKPEVEQIFTEYRKTHNQGVFDVYTPDILRC
                     RKSGVITGLPDAYGRGRIIGDYRRMALYGADFLMKDKQRQFASLQARLESGEDIQATI
                     QLREEIAEQHRALGKMKEMAASYGFDISGPATNAQEAVQWTYFAYLAAVKSQNGAAMS
                     FGRVSSFLDIYIERDLKAGKITEQEAQELIDHLVMKLRMVRFLRTPEYDQLFSGDPMW
                     ATETLAGMGLDGRTLVTKNSFRILHTLYTMGPSPEPNLTILWSEQLPEAFKRYCAKVS
                     IDTSSVQYENDDLMRPDFQNDDYAIACCVSPMIVGKMMQFFGARANLAKTLLYAINGG
                     VDEKSGDQVGPKTEAITSEYLDYDDVMTRLDSFMDWLATQYVTALNIIHFMHDKYAYE
                     AALMALHDRDVFRTMACGIAGLSVAADSLSAIKYAKVKPIRTDIEIKNKAGEVVGVAK
                     NVATDFEIEGEYPQFGNNDNRVDDIAVDLVERFMKKIQKLKTYRNATPTQSVLTITSN
                     VVYGKKTGNTPDGRRSGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTF
                     SIVPNALGKDYEAQKRNLAGLMDGYFHHEATVEGGQHLNVNVLNRDTLLDAVEHPEKY
                     PQLTIRVSGYAVRFNSLTKEQQMDVITRTFTESM"
     gene            complement(23935..24759)
                     /gene="focA"
                     /locus_tag="PXC99_000890"
     CDS             complement(23935..24759)
                     /gene="focA"
                     /locus_tag="PXC99_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter FocA"
                     /protein_id="HDL5417364.1"
                     /translation="MFSPAEMAKIAEDGAVYKATKNQLYSFLSAITAGGFIAIAFVFY
                     TTTQVGASQMPWGMAKLIGGLVFSLGVIMCVVFGAELFTSSTLTIVARASQRINWLQM
                     FKNWVVVYFGNFVGAISIVLLIWFSGQIMAAKGQWGLVILNTAQHKIHHQWFEAFCLG
                     IFCNIMVCIAVWMSYAGKSLTDKAFIMMLPIAMFVASGFEHCVANMFMIPMGIAISHF
                     ASPEFWTAINVDPTQFADLDVSHFVFKNLIPATLGNIVGGVFFIGLMQWFLYIRKH"
BASE COUNT         6897 a         5405 c         4942 g         7608 t
ORIGIN      
        1 aagtgctact aacataagct acccgaccaa caacctccaa agttgcacca acgatattta
       61 ctaaaacatc cccttctttc agttgtgatg aaatcatttt ctcattgata tcttcgctaa
      121 taaaataatc taccgaagag tacttattta atagattatt cctaatatca ttggttttta
      181 ataagacaac cccctctttt aagttatcat ctcgatctgt tggtgttgta ccacttttaa
      241 tcagagaaac ctcattcagc gataatggaa aattaaaact cggatggttt aagtattttt
      301 tcaaaaagaa agtactatcc attcgttccg aataacttgc agaacgaacc ttactcaaat
      361 aaacctcgct cacctctagc ccatctaaca atgcctgata tttagcaggg tcaaatgggc
      421 ttaatccttt cccacaaaag agagcttttc ttttttagca aattcaataa aggcttctgc
      481 aatgccgtct tgggtactat tatcgtgatt aaatagatcg tgctccacaa ttaggtgttg
      541 atggttgtct aatttgagtg tgccatcagc gtttttaaca tagattttat cgcctgaatt
      601 atctttgctg gatttctgca ttgtggcaaa gaaaatcggg taatcctcta ctttcgggca
      661 aagttcatcg tgccattttt gcacaaatag tacggaagtt tttgtgccgg tatgtggttt
      721 aaacacattt ccgtgtaagc ccacaacagc taaaatgcgg caacgctctg caataaaatc
      781 acgaatatat ttatcgctgg aattgttaaa acgcccttgt ggtagcacaa tcgccattcg
      841 tccaccgtct tttaagaaat ctaaattgcg ttcaataaat aaaatatctc gtccgacttt
      901 ggattgctgt tttcctttgc tatttttgcc taattcatag cgagctaata tacgagtttc
      961 tttaatatca ccggcaaaag gcggatttgc cattagcaca tcaaattgga aatctcgatt
     1021 ttcattttta gttttacgta attttcttaa ttttttccag ccttctccat atacatcatt
     1081 ccattcttct tccttagtaa aatcttccca acgttcataa tctaaggtat ttaaatgtag
     1141 tacgttggtt tgcccatctc ctgcgattaa gtttagggta cgagcaacac gtactgcctt
     1201 ttcatcgaaa tcaatcgcaa agactttttc tttcacataa tctgtttgtt caggcaattt
     1261 ttcttcagca gtaaataagt gtgagcgttc taatcctctc gctttaagtt gtttttccca
     1321 aacgtgaaaa atagaatgaa ctggaaaacc acagcttcct gctgcggtat caatgactgt
     1381 ttcttcaggt tttggatcga gcatttttac gcacatatca atgacgtaac gaggcgtaaa
     1441 gtattgtcct ttctctcctt tactggattt attaattaag tactcaaatg cttcatccac
     1501 tacatcaagg ttagaattaa acagctttac ttcttccaat gaagatacac aaatcgccaa
     1561 atgcgaaggg gaaaggttga ttttggcact ttcagcaaat acgccttccc atttattttt
     1621 tgcacgatca aatagagatt gaatttttgc ctttaattca ctttcggtat caccatagtt
     1681 acgaaactct aaataacgac ttttattgcg tgtactttcc atttcatcat agagtttagt
     1741 aaaaataagt tgaaataact cttcaaaaac atcaactcca gcattcgcca gtacctcatc
     1801 ttccatttca ataacaagat ctttcaatga tttacgttgt ttggcaattt tgtcattatc
     1861 tatcagatct tgaatagtcc aacgttcttg taataaatca gaaagttttt gttgagcatt
     1921 cggaatatcg ggaatatctt taaaataatt aggatcacgg cgattatagt aagaaatact
     1981 ttcgccattt gtccatacac caataggtgc tccagtcgca ttacaataag attttaattg
     2041 ttctttacca tcttttaatt tcggcttttt cagctccacc ataatataga cagcgttagg
     2101 attatctcta tcaaagatga caatatccgc tcgtttcttc tcacgcccga atacaacaga
     2161 atattctaat tccattcgtt caaatggata atcatattca taatgcaaat tcattaaata
     2221 gagttggcgt actgcttctt caggtgtgag cttaatatcc tttttacgaa caagacattg
     2281 aatatgagga atatctccat ttttccctga tttgaggaaa atagattcct ctaatttttt
     2341 tatatacgca ggagaaaatt gagttaattg ataattactg tcttttaaaa gttgtactaa
     2401 gtgataattt tgtttttcaa tcattgtttt gttctcgatg ataacttctt tgcataaaag
     2461 agagataaat tttgcatatt ttatctcaaa accaaccgct tgtaacaggc gggttaaaac
     2521 ccgccactac attaaatgtt ttcagcctgc gacttgacat cttgtttcat cgccacactt
     2581 aaccatttct tcgccgtgag ttcgtcccag cctttgcgtt tggcgtaatc caacacctga
     2641 tcttcatcaa tcttgccgag agtgaagtag ttgctggtag ggtgggtgaa gtaccagccg
     2701 cagacacttg ctgccggcca catggcatag ctttcggtga gtttcatgcc gatgcgttgt
     2761 tccacctcta acaagtccca aattatctgt ttctcggtgt gttccgggca gcttgggtag
     2821 ccgggcgcag ggcggatgcc gatgtattct tcacggatta agcgtccgtt gtcttcgtct
     2881 tccacggtgt agccccagac tttggtacgt agctcaaagt gtaggtattc cgccattgct
     2941 tctgccaagc ggtcgccaac ggcttggagc aaaatggcgt tgtagtcatc gcctgccgct
     3001 ttgtagcttt caactaaata gtgttcttca atgccggcac aaacggcgaa cattccgaac
     3061 cagtcttgtt gtccgctttc tcggtcggcg ataaaatcgc ttaaacagag gttgtacggg
     3121 cttttgctgt ttttgcctcg ttcggattgt tggcggaggt ggtaggattt gccgatacaa
     3181 gcggtgcgat cttcgtttaa aattgcaata tcatcgccct cacgcacggc agggaaaatg
     3241 cccataatcc cacttgggtt gagcttgccg ttttgctcaa attcgtccag cacccgttgg
     3301 gcatcgttat agacacggcg tgcctcttcg ccgccttccg gataatcaaa ggcatcagga
     3361 taaccgccca ttaagcccca gagcataaag aacggcgacc agtcgataaa tttgcgtagg
     3421 gtggcaatcg gtacattttt gtactcgata atgccggtct gttttggcgt tggcggcaca
     3481 tagtctgccc attcgccact aaatccgtca aaacgattgg ctcgagcctc ctcaatagat
     3541 aaaccgttgc gaagtggttt gcgaacggca aatttacgct gaatttcttc gtattcggct
     3601 ttggtttttt cccaaaattc ggcttttgcc tcagggttca tcaaggtcgc acagacggtt
     3661 acgcaacgtg aagcgttggc ggtatagact acggggtagt tatatttcgg ataaagtttg
     3721 atcgccgtat gctcttttga ggtcgttgcg ccgccaatca gcaccggaat atcgagcttc
     3781 aagcggttca tttcacctaa aaaatactcc atttcgtcca gcgatggggt aattagtccg
     3841 cttaacccaa tgagatcggc tttctcccga atagcagttt cgataattac atcggcaggc
     3901 accatcacgc ctaagtctat cacttcaaag ttattgcact gcaacaccac gctaacgatg
     3961 tttttgccga tgtcgtgtac atcacctttc acggtggcga tcaccatttt gccgttgctc
     4021 gatcctttct gcttggtggc gttgatgtac ggctctaaat aggcaacgga ctgtttcatt
     4081 acccgagccg atttcaccac ttgcggcagg aacattttgc cgtctccgaa caggtcgccc
     4141 accacgtcca tacccgccat gagcggccct tcaatcactt ccagcggaga ggcaaattgc
     4201 tggcgagcct cttcggtatc ttcaataatg taggtcgtta tgccttttac gagggcgtgt
     4261 tttaaacgct ctgccacagg taaatttcgc cactcggcgg cactttcatc ggcactttct
     4321 acttttacgc cccgatattt ttcggaaatt tccaacaggc ggtcggtagt gtcatgacgg
     4381 tggttcagca ccgcatcttc aatcgcctct cgcagttcag ggtcgaggtc gtcataaatc
     4441 gccaactgcc ctgcgttcac gatccccata tccattccgg ctttgatcgc atagtagagg
     4501 aacacggcgt gaatagcctc acgcaccaca ttgttgcctc ggaaagagaa agagacattc
     4561 gacaccccgc cggaaatttt ggcgtgtggc aagtctcgtt taatccgctc acaggcttgg
     4621 ataaaatcca cgccgtagtt attgtgttct tcaataccgg tggcaatcgc aaaaatgttc
     4681 gggtcgaaaa taatgtcttc cggtgggaag ccgagctgat caaccaaaat ccgataagct
     4741 cgggtacaaa tttctacctt gcgttcttcg gtatccgctt gcccgacttc gtcaaatgcc
     4801 atcaccacca ccgcagcccc atagcggcgg cagagtttgg cttggtgaat aaatttctct
     4861 tcgccctctt tgagtgaaat ggagttcact atcggcttgc cctgcaccgt ttgcaagccc
     4921 gcctcgatca cctcccattt cgaggagtca atcataatcg gcacttttgc cgcctcaggt
     4981 tcggtagcaa gaatgttgag gaaacgggtc atacattttt tggaatcgag caacgcctcg
     5041 tccatattca cgtcaatcac ctgcgccccg ttttccactt ggctgatggc aatttcaatc
     5101 gcttccgcaa atttttcttc tttaatcagc ttcttaaatt ttgccgaacc ggtgacgtta
     5161 ttgcgttcgc ccacattcac aaacagcgaa ttatcgtcaa tcgtcagcgg ttctaagccc
     5221 gacaaacgca tagcggttgg aatttcaggt aatttacgag gcgcaacgcc tttggttgct
     5281 tcggcaaagg cttggatatg ctccggcgtg gtgccacaac agccgccgac aatattcagc
     5341 cagccgagtt ctgcccactc tttgatgtaa gtcgccatct cttccgcccc taaatcgtac
     5401 ccgccaaaag cgtttggcaa gccggcattc gggtgaaccg aaacaaaagt ctcactgatt
     5461 ttcgacatca tctctacata agggcggagt tccttcggcc cgagcgcaca gttcaagccg
     5521 aacgtcagcg gtttggcgtg gcggagcgag ttataaaacg cctccgtggt ctgccctgac
     5581 agcgttcgcc ctgaggcatc ggtaatggtg ccggagatca ttatcggcaa tttcacgccc
     5641 agttcatcaa acaccgtttc aattgcaaac accgccgctt tggcattcag ggtatcgaaa
     5701 atggtttcga tcataatcag atccgcccca ccttcaatca aaccacgggt tgcctcggca
     5761 taggcttcca ccagttgcat aaaggtaatg ttacggaaac cggggtcatt aacatcaggg
     5821 gaaatcgaac aagtacggtt agtcggccca agaataccgg caacaaaacg aggtttttca
     5881 gggatggaga atttatcggc ggcaagacgg gcaagttttg cccccacaag attcagctca
     5941 taagcaatac tttcaagttc ataatctgct tgagcaatgg tcgtcgcact aaaggtatta
     6001 gtttcgataa tatccgcacc ggcggctaaa tatttctcgt gaatagcaga aatcaggagt
     6061 ggctgggtga gtgtgagtag gtcgttattg cctttaagat cgatggtact gtttttaaaa
     6121 cgttcacctc ggaaatcaga ttcggttagt ttatattttt ggatcatcgt tcccatcgca
     6181 ccgtctaaga taagaatgcg ttcggtaagg gcattttgaa gtaattcggt tctatgctgc
     6241 gtgttcatac tctgcttcca gttttttagt ttgattaaaa ggaataatag aaatatgtcg
     6301 caaggctgtc aaaccttatc tgtgacgaaa tggaaagggt tagagtcgcc tttaaaatta
     6361 tgctatattg gctcagttct tccccttttt attttgcaaa atgtaggaaa aatatgaccg
     6421 cttgtcacga acccaaacgc tctatctggc aacagatttt tactaaaaat atgttgcttt
     6481 gtgtttacac cggcttttgt tccggtttac cgttgtttgt gttaattcag ctaatgccgg
     6541 cttggctaac cagtgccaat ttagatatta aaactattgc cgccttcacc ctgacctctt
     6601 tgccctacac gtggaaattc ctgtgggctg cattgttaga tcgctacttt ccaccttttt
     6661 taggcagacg caaaagctgg attttcattt cacaaatcgg gctattggtg attttagcca
     6721 gctttggctt gttcaaccca gtgcaagata tttcaattat tgttactctt tctgtgctat
     6781 tagcttttct ttccgccacg caagacattg tggtggatgc ctttcggcgt gaaattttat
     6841 cggataacga actcgggtta ggtaactcta tccacgttaa tgcttatcgt attgcagggc
     6901 tgattccggg tgggctttca ttatttttag ccgatcacta tgcgtgggat accgtatttc
     6961 tgattaccgc tgctttttta gtgccttgct tattcgttac gctaataatc gctgccgagc
     7021 cgaatcataa gccaatcgac cgttctaagc cgttttatat ggcgtttgtc gatccgttca
     7081 aagagttttt cacccgtaaa ggcgtggcag gagcgattgg gctgattcta tttattttcc
     7141 tatataaatt aggcgattcc cttgcaacta cgctacaaac caaatttatt ttggatatgg
     7201 gttttactaa atcgcacatt gccggcattg tgaaaataac ttcactttgg tgcagcattg
     7261 gcggcggtat tattggtggc gtggcaatgt tgaaattggg cgttaaccga gccttatggc
     7321 tgttcggatt tgtacaatta attactattt taggcttcgc ttaccttgcc agttttgagc
     7381 atttccctac cgaaagcatt ggagctgccg agctttggaa attaggctta gtgatggcag
     7441 gtgaatatct gggcgtgggt ttaggcacag cggctttcgt tgcctttatg gctcgtgaaa
     7501 ctaatcccgc ttacactgca atgcagctcg ccattttcac cagccttgct gccctaccaa
     7561 gcaaaatgtt aggggcatac acagggcatt tagtggaaat gatgggctat taccaattct
     7621 tctggctctg tttctttatt ggtattccgg gaatgctaat gttgtttaag gttgctcctt
     7681 ggggacaagc tgaatagcta ttcataaaaa taagattttt tattaaatat ccgaccactt
     7741 ataaccgatt gaattaccta gtaatttagt cggttatttt ttatttatcc taaaatttac
     7801 cctcacctaa aactaaatga tattgacttt catttataat aaaaatatat ttagcaccgt
     7861 tttcataata gattttcatc tactcatttt cattttgatt gatttggtgg ggtaatccca
     7921 ccttttttat gctcttaaaa cacaacacta tgattcaaat aaattccatt agctactctg
     7981 ttgaacaaaa ccgtaaactg ctaagcaata tttccctcaa tttaagcaag gggcgtttat
     8041 atggcgcata acggctcggg taaatcaacg ttaatgcgtt tactaagcgg agatataacg
     8101 cctaccagcg gttcaatttt agtcgatgga ttaccacttc atcagctttc taccaaagaa
     8161 gcggcaaaac atattgccta tttaccacaa cgtttacctg aagcggcgga tttcttagtg
     8221 caggaactgg ttgctttagg gcgatttcca tatcaaaaat ggctacaaaa accaacagaa
     8281 tttgatgttc aaattgttga gcaagcaatg gaaagcacct ccgttactca gtttgctaaa
     8341 cagcctgtaa atagtctatc aggcggagaa aaacaacgag tttggcttgc tatgtgctta
     8401 gcccaacaaa caccctattt actgctagat gagccattgg ctgcccttga tattgtttat
     8461 caagttgaag taatgcagct tattcgcaag ctagtgaatg aacaaggtct aactgtcatt
     8521 atcattattc acgatattaa tcttgcctcc caattttgtg atgaaattat tgcgttaaag
     8581 caaggcgaac tctgtattca aggttctgtt gatgaaatta tgcaagaaca gaaattactt
     8641 gagatcttcg ggctaaaact gcacttgttt aaccaccctg caggcttaca taaagtggcg
     8701 gtattatgat gtttaggcaa tacaagcggt tcatttttct ctttattttg caaatttcta
     8761 ccgcatttgc tcaacctaat atttttacac cagattggtc tattgcctct gcccttactg
     8821 aaatgggaaa tccgcccatt gcgatggggg ataagcgaat ttatccgcta tggtcgcacc
     8881 gccctattca gcctaatagc gtgttagata ttggagcgcg ttatcagcct aatcgcgaat
     8941 tattagcaca gcttcctgtt gaattggtgc tatcaaactt tttctacgct cacttggctt
     9001 ctgtttaccc gaaagaaatt ccacaaatag acgtgctatt tgatggtggc aatactgaac
     9061 ctcagcaaca ttggcatact taccaaaaag ccactcgtat gattggaaca gagattaaaa
     9121 accctaatgc ggcagaagca tatttaacga aaactgaaca aacgttggct caatggggga
     9181 aagaaatcct taacagtaat ccagatattg attactactc tgttgttcaa tttggctctc
     9241 cgagagagtt acgcatatat gcgtctaatt caatgttccg tgtagccttt gatttgatgg
     9301 gcttaaaaca agctgattta ggtgtgggag atcgctgggg aaataaactt attcctgtga
     9361 gtgatttagc taaattaccc gaacgcacct gtttaattgt catctcacct ttttctaaaa
     9421 tgacgcaagc agatttagaa aatagctaca tttggcaacg tttaggattt ggtaaaaacc
     9481 gttgtatgaa agtattaccg cctgtttggc tctttggtgg ggctgattcc atctcgcact
     9541 ttgctgagtt tttacacaat gcaatgacac aaggagaaaa agagtaatga aatcatcatt
     9601 cttattgatt ggctgtattc ttttatcctt agtaacagct gttatccgtt taaatatggt
     9661 ctgggagtgg gaatggcagt tactactcat aaatgttgat ttattgccaa ttaatcaagc
     9721 tgcggtaaaa gcagctcttt tacctgaaat gacaacgtca tttttagcag gcggtttatt
     9781 ggctatagcc agcagtggct tacaacatat tgtcagaaat aatttagcgt cagatagcac
     9841 acttgccgtc agtagcgggg ctcaacttgc attgatgatt gcggttatct ttttcccagc
     9901 cgccgagctt ttttctagtt tctggattgc gttacttggc tctttagctg ctatcgtact
     9961 ggttttattt attgctaaag cctctaagct caatcccctt acccttattt tagggggatt
    10021 gattgttaat attttgtttg gagctattgc ctctttactg acccttttct actttgattt
    10081 tttatttggc gtgatggttt ggggaagtgg ctcactttta caagatggtt gggcaacttc
    10141 tattacctta gcgataacgg tagtagttgc attttttatc tttgtcttac tctctcgtcc
    10201 actcacaatt ttaagtttag atgatgaaca agctcgccgc ttaggcgcgc ctgttaattt
    10261 actacgctac ttagttattt ttgtttgtgc cgccattaca gcattggttg taagcaaaat
    10321 aggtgtgatt ggctttattg gatttgcagt gcaagtttgg ctcattttgc caaaatacga
    10381 catttattac ttcgcctctt gattgctttt ctagcgggcg gatttttact cttttttacc
    10441 aataatctca tcggcattgt tagcagaatt tacgacactc tactacctgt tggtgcattt
    10501 accgcaacac taggcgcacc attattaatt ttcttggtat tacgccaacg taaagcacaa
    10561 tttgaagcaa gcaatacagc atacttcccc gttaaacgcc tcaattcgtg gaaactgcca
    10621 atattgttgt tatgcgctgg agttatccta ttttgtctat tacaaatcat tgctccaaca
    10681 atgaatggct gggctattag cattgatgaa aacctgatga gttcctaccg cttgcctcgt
    10741 agtctaagtg cgatagcaac aggggcaatg cttgcggtaa gtggtagcct attacaaatc
    10801 ttaacgagaa acccaatggc aagccctgaa gtattaggtg tgagttcagg ggcaactatt
    10861 gctgcagtac tgtcattctt acttttccca acattatcta gcattagctt cttgttattt
    10921 ggtgtattag ggagtttgac tgttctcgct cttattatgt ggctctctcg taaattacaa
    10981 ccatcagcgt taatgattac aggtgttgct attggagctt tagtcagtgg cttaatggct
    11041 attattcaac taagcggcag ccctcgttta acggcagtta ttagttggct gtctggctca
    11101 acctattacg ctaatccgaa tacagtttgg attttattat ctgttgcaat cctacttatc
    11161 agtgccactt tactgtttat caaaccttta cgtttgatct cacttggcga gaccgtttct
    11221 taccatttag ggttagaggt taaaaaagta caaatgattg tattactttt aattgcccta
    11281 atgagtgccg cctctacact tgcggtaggg ccaatgagct tcattgggct aatgacccct
    11341 catttagcta aaaatttagg tgcaattaca ccggagaaac agatccctat atcggcatta
    11401 ttaggggcaa tgctaatgct cattgccgat tggctcgggc gttatctaat tttcccttat
    11461 gagattgggg caggcattat tgcctctatt ctcgggggta tctatttctt actgttactc
    11521 aaacaacata aataattttt tattcattac ttaggagaaa ttatgaacac gctatctaaa
    11581 gcgataaaac ttgccttata cagttctggt atagggttta tctcaacagc ttacgctgaa
    11641 acagttactc atcttgatac cgtagaagta agtgccgaaa cgccaaatgc ctcatcggaa
    11701 gaaactggac gttatgcaca gaaaaaagcc aaaggctcta atggaatggc attgagtgcg
    11761 aaagacacgc cacaaagcgt aacggctgta acgcatcaac aaatcagaga tcaaaatctt
    11821 aatacgattg ccaaagcact tgaagcaact cacggtgttt ctgtttcttt acttgacaga
    11881 ggacgctatt ctttcagtgc tcgtggtttt gggattgata aagtcaaggt agatggtatg
    11941 gatctcaaag taagtaaata accaatggac aacgggcgaa aatacaggca acagcgtgtt
    12001 atacgaccga gtagaagttg tgcgtggtgc tacaggctta actactgggg caggcgatcc
    12061 ttctgcaagt gttaatcttg ttcgtaaacg agccaatagc atttcccgtt atactatttt
    12121 agaagctgga atcgggcgtt atgctgattt caatacaatg attgaccata gccaagcatt
    12181 gaataattca ggatcagtaa gaggccgctt tattgcagag cataaaaacg gtaatacgtt
    12241 cattaaaaat gaaaaagaac gttacaccac gctttatggc aatattgaag cagacttaac
    12301 tgacactacc aaacttgggt taggtgtaag ctatcaaaaa gaaaaacgtg atgcagcact
    12361 ttggggtggt ttacccgcat tctatagcga cggtggtgaa actaactgga gcagaagcaa
    12421 aaatgccagt ccggaatggg cttactggga taatgaatcc gtaaactatt ttgccgatat
    12481 tacacaaaaa ctaggcgaaa aatgggaact tgcattaaaa ggcaattacc gtgtaggcaa
    12541 acataattca gaacttttct atttcagcgg ctcatcactt aatcgccaag atggattagg
    12601 ttggtcgcct tggccgggta aatttaaaaa tgataataca caatctaatg tgcagcttga
    12661 tcttaccggt tcattctctg cttggggatt agaacacgat gcggcaatcg gtattcaata
    12721 caatcgagca catcgtaatt cctacgctgc cgataatagc acctttgacg gagctttcga
    12781 ctttaataat tggaatggca tttatgctag accaaactgg ggaagtatgt ctgaaaaata
    12841 ctaccaaaac ttaaaagagt tcggggtgta tgtttctacc cgtttacatc ttacagatag
    12901 actttctatg cttctaggtt ctcgtatttc atcgtaccgc acagaaggca ctttctatgg
    12961 ttcaacacaa aacttccacg ctaacgatgt ttggacacct tatgcaggat taacctttga
    13021 tattaatcca caaaataccg tttatgtaag ttataccgat attttcaaac cacaaagtca
    13081 agtggacatc aataacaaac tactctctcc tgttacgggc gaaacctacg aagcaggttg
    13141 gaaagggagt tatttcaatg acaacttgca aactcaaatt agcgtatttg aaacaagaca
    13201 agataatcta gctcaatctg ccggtattaa ccctaataca ttattagcct actacacagc
    13261 ctctaaaggt gcgaaagttc gaggctttga agtagaagca tctggaaatg taactgaaaa
    13321 attaaaactc agtgcaggat atactcagtg gaaaggcgat gatgcttcag gtaacccaat
    13381 taacacaact caaccacgca aacaatttaa actctttgca acttacgata tgaaccgttt
    13441 agtgcaaggt ttaacggtag gagcaggtgt aaactggcaa agcagaattt ataccaaaca
    13501 cgctacttat ggcgaatatg gtcaaaaagc ttacacttta gtgaatttga tggctcgtta
    13561 tcaatttaat gacaacttct cagcacagct taacattgat aacttattcg ataaaaaata
    13621 tcgtaacgcc ctcagcttta gccaatatag ctacggtgag ccattctata cacgcttaaa
    13681 tttacgctat gaattctaat tccgtataac aagcggtcaa aaaattaaaa aaatttgcaa
    13741 ttttaggcag taatcggtaa ggttactgcc taagtgattt tattattttt agtttaattg
    13801 aggttttcaa atgaaagtga ttttattagg tgcgccgggt gcgggcaaag gtacgcaagc
    13861 tcagtttatt atgaacaaat tcggtattcc gcaaatttca accggcgata tgttccgtgc
    13921 agcgattaaa gaaagcactg agcttggtaa acaagcaaaa gcattgatgg acgaaggcaa
    13981 gttagtgccg gatgaattaa cggtcgcctt agtaaaagat cgtattgctc aaccggattg
    14041 tgctaatggc ttcttattag acggtttccc acgcaccatt ccgcaagctg atgcgttaaa
    14101 agagtcaggt gtaaaaattg atttagtgtt agagtttgat gtagctgatg aagtcattgt
    14161 tgagcgtatg agtggtcgtc gtgttcacca accttcaggg cgtacttacc acgtggtgta
    14221 caatccaccg aaagtggaag gcaaagatga tgtgactggt gaggatttaa ttatccgcca
    14281 agatgacaaa cctgaaacgg tattagagcg tttagcgatt taccacaaac aaaccaaacc
    14341 gttaatcgcc tactacaccg cagaagcaga agccggcaac actcgttatg agcgtttaga
    14401 tggaacaaaa ccagtggaag aagtaagtgc tgagttagcg aaaattttat cttaaatgga
    14461 ttattaaaat gaacaagcgg taatattttt cgagaatatt accgcttgtt ctttgcttaa
    14521 acacaatatt tggtgagcat taagatatca tcataaatcg gtgaaataaa cacttccgga
    14581 ttttcaatct tcatctcctt tggtttttct tctagctttt ctggctcttt cttatcttta
    14641 ttctctaccg gttgagtcgc ttcatttacc acactagctt gagttttatc tgctacaggt
    14701 atatctattt tgtttggtgc ttgctctact gcttgagaat ccgctttcag ctctttagaa
    14761 acttcagtat ttacgatagg ttcttgtaag ttttccgcta ctctttcctc tacttgtggc
    14821 ttaatacttt ctgcctctgc tctcggttta taagatggat caagtaattg atggctaata
    14881 tccattttcg gatcaagcca aattgctaca atagcatcat tgaaagcttt attaaacaca
    14941 tcagagacta ctttatcatt taaaataaaa taacctctat cttctaatgc aatatagtgc
    15001 aatgtatctt caggcttaat atctgggaaa gtttttctca ggtgggtaat aacctcatct
    15061 aactcttttt caggtagctt aatgcctaaa ttattccaag ttcttgctaa agaaaccgca
    15121 aaatcacgcc cctcccacgg ttttttatat tgtagagtaa gcattaaagg acgtgtacct
    15181 tctacataag taccgctctc agtaaaaagc gtaatatggt aaatattaaa tggcccccac
    15241 gtataattca catcattaat ttttgtccaa tttgcatttg ctgttgataa aaatagagaa
    15301 aacaacagcg aaaagaccac tttatagctc attatttttg tgtccttaaa tctaaaattc
    15361 ctactcatta ttatagcctt aaatatggct cacacacatt ataattttcg atataaattt
    15421 tgtgatcaag ttcaaaaaaa tagaaagatt taacagtaaa tcaacaaaaa aatgctagta
    15481 tttaatcaag taaaatttgc aaccactatt aggagttaaa tatgtttcca gaatttcgtg
    15541 atctcataac ccaattaaag caaaacaatt cacattttgc tcgcttattt gataaacata
    15601 atgagctaga ccagcgtatt aagaatatgg aggcaaatat tgaactggca acacatgaag
    15661 aagttgaggc actaaaaaaa gaaaaattgc atttaaaaga ccaactttat gcaattctaa
    15721 aacaagaatc ggcttaacct aaagtaaaag ctcagaaaat attctgagct ttaatttcgg
    15781 tcatattaga caatattaca gttttaccgg ctcaataatt tcgcttgggt agcaacccaa
    15841 cactttgagg tagctggtaa cttgctccaa ttccgccaat gctttttggg tgttctcgga
    15901 atgaatattt gcctccagct ccacataaaa catctcttcc caaggtttgc cgtaaatcgg
    15961 gcgggattcc agtttcatca tacgaatatg atgatttttg aataccatta acgcatcgac
    16021 caatgcaccc gcctgttgcg tggtggtcat taacagtaac gttttggttt gtacctgtgg
    16081 cgaaacctgc acagcctctt tggcaacaac aataaaacgg gtgatattgt gagcttgatt
    16141 agcaatatcg gttttgatat tcgtcaagcc atacaatttt ccgccatctt cattgcccaa
    16201 ggcaacaata ttcggcttat tcaagcgagc caccatttgc attgcgtgcg agctgctttc
    16261 gcaatatttg atatgtactt tatctagccc ggctaaaaat tggctacatt gctgggcagg
    16321 ctgagggtgg gtgtaaatgg tatccacctc cgccaaatca accgtgccgt ttgccaatac
    16381 acaatgtttg attgggtacg ccaattcacc cactaaggtt aaatcggtat gctgcaataa
    16441 atcatacact tcattgatcg aacctgaagt cgtgttttca agcggcagta cgccaaaatc
    16501 ggcttcacca aggctgactt tctcaaatac ttcattaaaa gaatggcagc ttaattccgc
    16561 caatgtgcct tgatattttt tggcaaactg tcgagatgcc atattagaat aagagcctcg
    16621 cattcccaaa aacgcaatcg aaacctgctc ttctttttgt gcattcaatt tattttgcag
    16681 ataattttgc tgagtcagca ctgaatcttc aataatacgt tggaaaattt gggtcacata
    16741 ttgcggatca agctggtaat tctccgcttc ggcaaaattt accagttctt gaagcaaaat
    16801 cttttcccgt tctaaatctc tcaagggttt ttgtgtgatt tctttgctcc gcaccacatc
    16861 aaaggctaag cggtggcgtt ctgccagtag ctttaataaa ttgcggtcta agttggttat
    16921 ttgggttcga atatcggcta aatctaaaga cattatttca ctctctgtca ggctaaatgc
    16981 tgaaaattat aacgagttgc aaaagaaaga aaagacaagc ggtcaaattt acaaaaaaat
    17041 ttgcaaatct aaccgcttgt aaaacgtgtt tactttattg agtgcaatca acaggctcgg
    17101 cattacctac aatgcctttg tgtctgagca aggcatcaag ggttggctta cgcccacgga
    17161 agcgttcgaa cagcaccatt ggctcttctg aaccgcctcg ggttaagata ttatctaaga
    17221 aagactgccc cgtttcaggg ttgaaaatcc cctcttcctc aaagcgtgaa taggcatctg
    17281 ctgaaagcac ttccgcccat aaataactgt agtagcccgc cgcatagccg cctgcaaaaa
    17341 tatgcgagaa actgtgtggc gttctcgccc actctacgcc tttggcaaca gcgacttggt
    17401 ctttcacctc tttaagtaag gctaacactt gtccttgttt gctcgggtca tattcggtgt
    17461 gtaggcggaa atcaaacaag ccaaattcta attggcgaag cacaaacatt gccgcttgga
    17521 agtttttcgc cgccaataat tgctctaatt tcgcttttgg taacggctcg ccggtttcat
    17581 aatgccctga aataaaggct aatgcctctt cttcccagca ccagttctct aagaattggc
    17641 ttggcagctc cactgcgtcc cacggcacac cgttaatgcc ggcgacatcg cccacgtcaa
    17701 tttcagttag catatggtga atgccgtgtc caaactcgtg gaacaaagtt gtcacttcat
    17761 cgtgggtaaa caatgccggt ttatcgccaa tcggtttatt gaagttacag gttaaatatg
    17821 ccaccggttt ttgtaatgtg ccgtcagcca agcgtttttg gttgatgcaa tcatccatcc
    17881 acgccccacc acgtttgttt tcacgagcgt ataaatctaa gtagaacgag ccacgcaagc
    17941 ggtcattttt atcaaaaata ttgaaaaaac gtacatcttt gtgccataca tccacatctt
    18001 tttgttcttc cacacgcata ccgaaaatgc gtttaattac ttcaaataag cctgataata
    18061 cgcgattttc cgggaaatac gggcgaagtt cttcatcatt gaccgaatac aatgcctgtt
    18121 tttgtttttc gctgtagaac ggaatatccc ataaatccaa atgttcaatg ccgaaatggg
    18181 ctttagcaaa ttttttcaaa tcgcataatt catttttgcc ttgagctttc gagcgagcgg
    18241 ctaaatcgtt caagaaatct aatacctgtt gtggattttc tgccattttg gtggctaatg
    18301 aataatcaga ataagtctta aagccgagaa gttgggcttt ttcgtgacgc agttttaaga
    18361 tctcatcaat caccgcactg ttatcccatt tgcctgcatt cgggccttga tcagaagcac
    18421 gagtcacata agcacggtac atttcctcac gcagtgcttt gttttcacaa tacgtcatca
    18481 ccggcaaata gcttgggatt tcaagagtga agcgatagcc tttcttacct ttgctttctg
    18541 cggataattt tgccgcttct aatgccgatt ccggcaagcc tttaagctgt gcttcatcgg
    18601 taattacaat atcccaaccc attgttgcat caagtacgtt gttgctaaat tgcgagttga
    18661 gttccgacaa gcgtgcagaa atttccccgt agcgtttttg tttctctgcc ggcagtgaaa
    18721 tgcctgataa ttcaaaatct tgtaagctgt tttcaatcgc ctttttctgt gcaaccgaat
    18781 aagtttcaaa ctcagggctg ttttttaact tcacatagcc ttgatataac ccttgatgtt
    18841 gccccgccca agtgctgtat tccgataata acggcaagca cgcttggtaa gcctcacgca
    18901 actctgggga atttttcacc gcattcaaat gccctaccgg tgaccacgca cgggagaatt
    18961 tatcctctgc cattgcttgt ggcatataga aattttccca cgtcgggttt tcaatttgtg
    19021 cgactttttc aacagtttca cggcattctt tgatcaccgc ttctaccgcc ggtttgatat
    19081 gttcaggttt gatttgtgag aacgcaggca agcctgtgta atttaaaaga gggttagaca
    19141 ttattttttc cttttatggt caaaatgaaa attcgtatca agataataca caaagtgaga
    19201 gagaaaagaa aacaagcggt catatttcaa taattttttg caaaaaaatc acaaaatatg
    19261 accgcttgtc tttagaattt gactgtatgc ccgtaacttt caatgatttt ttggatacgc
    19321 tctaaatcct ctttaggcgg tgacattacc ccttccagct catatttata gcctaaggtt
    19381 tcccatttgt gagcccctaa acgatgataa ggcagaagtt ccactttctc aatgttatcc
    19441 attccttgaa taaactgccc taaacgatgg gcagaatcat cgtcatcagt ataacccggc
    19501 acgaccacat agcgaaccca agtcggttta tttaatttgt gcagataacg ggcgaaatca
    19561 agggtacgct tattcgacac cccgactaaa tcttggtgaa cttcatcatt gagctgtttt
    19621 aaatccagca agaccaaatc ggtcacttca agcatttcat ccaccaccgg gctataatgg
    19681 cgaacaaaac cattggtatc taagcaggta ttaatgcctt cagccttaca ggcacgaaac
    19741 caatcccgca caaactccat ttgcaacacc gcttccccac ccgaagctgt tacaccaccg
    19801 ccggttgctt tcataaaatg cttataagtc gtgacttctt tcatcagctc ttcaaccgta
    19861 atttccttac caccatcaag atcccaagta tcacgattat ggcaatattt acaccgcatc
    19921 aaacagcctt gcaagaacag aataaaacga atccccggtc catctaccgt accgcaggat
    19981 tcaaaagaat ggatacgtcc aacaacagac atttgtcacc tcaaccctca aaaaattttg
    20041 agaaattgta gcaaattttt atgttgttcg cagaaataaa tcacaccggt atattttaag
    20101 aaaggagaaa gtcatactat tttttgccta tttcaggaat aaacttttat taatctattg
    20161 actccatcaa catatcaacc aaatatgttt aaatttttgc attttttaaa gctattttga
    20221 ccgcttacaa gcagtcggtt tttctgaaaa ctttgcaaac ctagccggcg tggtatttgg
    20281 cggcgacctc ttttaccagt aagtcgaaat cgctttcgta ggtgagatcc tgcttgactc
    20341 ggtatttttc aaattcgctg agggcgaaag atttagcaat ttcagcggta actttgccgg
    20401 catcttgtaa gatttctcgg tcggtggcgg caagaaagcg gttaaggcgg gtttcccagt
    20461 ctgccattgt catcggaatt tggcgttctg ccatatcttc cgccatatcc aaataggcag
    20521 agaccagccg ttgtagttgt gctaattcat tatccgataa ataatttttg gcaaccacca
    20581 catcaaaggg gtaaattttg ccttgcggag cgtctttcca attcgttagc cccatattcg
    20641 gcttttcagc gttggctcgt gccataatca gctcggcggc ggtatgcccg tgaattgccc
    20701 aatggagctt gttctgcacg gtggcaaaaa agcgtttggt ggcggttgcg gtgcggtcgt
    20761 agtccacggc ggtagcgtaa atgtcggtga ttttttggta gaacttgcgt tcggataacc
    20821 gaatttcccg aatacgagca agctgttctt caaagtattt tttgcccaaa atcgtgccgt
    20881 catttttcag ccgttcatcg tccatcgcaa agcctttaat cgcaaagcta tgcacgattt
    20941 cggttgccca tttgcgaaac tgcaccgctc gctcggaatt gactttataa cccaccgcaa
    21001 taattgccga cagattataa tgcttggtgt ggtagttttt gccgtcttgg gcagttatcc
    21061 aaaaaaattg gataactgaa ttttcagcta actcattgtc actaaagatt tttttgagat
    21121 gatagctaat ggttcgtaca tcaacatcat acaacaccgc catcattttt tggctaagcc
    21181 atacattttc atcggcgtaa acggcatcaa cttggctttc gccggtagct gtaataaaag
    21241 tgaggtattc cgccacagag gaacgaatta aatcttgctt agacatctct ttctcccata
    21301 tagaacactg taattataaa caatattacg aaagctgtgt aaatgaatag ccaatttttc
    21361 gagcgagatc acaaaaaaac cgcttgcggc ataaatgcta caagcggttg attattactc
    21421 acaaaattgt ttccaatttt gttcgctcct acggagccgt cggcaaagcc aacgttcaaa
    21481 acgcaatgcg ttttgtggct aaaagttttg caaattgtaa ttacatactt tcagtgaagg
    21541 tgcgggtaat tacgtccatt tgttgctctt tggttaaaga gttgaaacgt accgcatagc
    21601 ctgaaacacg aatcgttaat tgcggatatt tttcagggtg ttctaccgca tctaataatg
    21661 tatcacggtt taacacgttc acatttaagt gctgaccgcc ttctacagtt gcttcgtggt
    21721 ggaagtagcc gtccattaag cctgcaaggt tacgtttttg ggcttcgtaa tctttaccta
    21781 acgcatttgg tacgatagag aaagtataag aaataccatc tttcgcatag gcaaacggta
    21841 atttcgccac agaagttaat gaagctaccg cacctttctg gtcacgaccg tgcattgggt
    21901 tcgcacccgg tccgaatgga gcacctgagc gacgaccgtc cggtgtatta ccggttttct
    21961 taccatatac cacgttagaa gtgatagtaa gcacagactg agtcggcgtt gcattgcggt
    22021 atgttttgag tttttgaatt ttcttcataa aacgttcaac taaatcaact gcaatgtcgt
    22081 ccacacggtt atcgttgtta ccgaattgcg gatattcacc ctcaatttca aagtcggttg
    22141 ctacgttttt cgctacacca accacttcgc cagctttgtt tttgatttca atatcggtac
    22201 ggattggttt tactttcgca tatttaatgg ctgaaagtga gtctgccgct actgaaagcc
    22261 ctgcgatacc acacgccatt gtgcggaaca catcacggtc gtgaagagcc attaatgccg
    22321 cttcgtatgc atatttatcg tgcataaagt ggataatgtt cagtgctgtc acatattggg
    22381 ttgcaagcca atccataaag ctgtctaagc gggtcattac atcatcgtaa tctaagtatt
    22441 cacttgtaat tgcttcagtt ttaggcccta cttggtcgcc tgatttctca tcaacaccgc
    22501 cattgattgc gtataacaag gttttcgcta agtttgcacg agcgccgaag aactgcatca
    22561 ttttacccac gatcattggc gatacgcagc acgcaatcgc atagtcatcg ttttggaaat
    22621 ccggacgcat taagtcatcg ttttcatatt gaactgatga agtatcaata gacactttcg
    22681 cacagtagcg tttaaatgct tccggtaatt gttcagacca aagaatagtt aagtttggct
    22741 ccggtgacgg ccccattgtg taaagggtgt gtaaaatacg gaagctgttt ttggttacta
    22801 aggtacgacc gtctaaaccc ataccggcta aggtttcggt tgcccacatt gggtcgcctg
    22861 agaataattg atcgtattcc ggagtacgca agaaacgcac catacgcaat ttcattacta
    22921 aatggtcgat taactcttgg gcttcttgct cggtaatttt gccggctttt aagtcacgtt
    22981 cgatataaat atctaagaat gaagacacac gaccgaaaga catcgccgca ccgttttgcg
    23041 atttaaccgc tgcaaggtaa gcgaaatatg tccattgcac cgcttcttgt gcattggttg
    23101 caggacctga aatatcaaaa ccgtagcttg cagccatctc tttcattttg cctaaagcac
    23161 ggtgttgctc ggcaatttct tcacgcagtt gaatcgtggc ttgaatatct tcgccggatt
    23221 ctaaacgagc ttgtaatgag gcaaactggc gttgtttgtc tttcattaag aagtctgcac
    23281 cataaagtgc catacggcgg tagtcaccga taatacgacc acgaccataa gcatccggca
    23341 aaccggtaat tacacctgat ttacggcaac gtaaaatatc cggagtgtaa acatcgaata
    23401 ccccttggtt atgggtttta cggtattcgg taaagatttg ttctacttca ggtttaagct
    23461 cacggcgata aactttgcac gaacctttca ccatattgat accaccaaac ggcataatcg
    23521 cacgttttaa tggagcatct gtttgcagac caacgatttt ttctaacgat ttatcaatat
    23581 aacccggtgc gtgtgaggta atggttgatg gcgtgtcgca gtcaatatca tacggttcgt
    23641 gtgttttgtt ttctactttg atcatttcca tcacatctgc ccacaatttg ctggttgcag
    23701 gtgttacttc agctaggaaa gactcatcac cctcataagg tgtgtagttt ttttggataa
    23761 aatcacgtac atttacttca gtttgccact cgcctgcggc aaaaccttcc cacgcttttt
    23821 gttgagcgtc tgttagttga gtcattttaa gtcctctgtg ttagtaagtt aaaacgggaa
    23881 agcggtgatt ttttgcaaaa aatttgcaaa atttgaccgc ttgaatctga aatcttaatg
    23941 ctttctaatg tataagaacc actgcattaa accaatgaaa aacacgccac cgacaatatt
    24001 acccagcgtt gccggaatta agttcttaaa cacaaaatga gatacatcta aatcggcaaa
    24061 ttgcgttggg tcaacattaa ttgctgtcca aaattcaggg ctggcaaagt gcgaaatcgc
    24121 aatccccatc ggaatcataa acatatttgc cacacagtgt tcaaagccgg aagccacaaa
    24181 cattgcaatc ggtaacatca taataaaggc tttatcggtt aggcttttac ctgcataaga
    24241 catccacacc gcaatgcaca ccataatgtt acagaaaatg cctaaacaga aagcctcaaa
    24301 ccattggtgg tgaattttgt gctgtgcggt atttaaaata accaaacccc attgcccttt
    24361 ggctgccata atctgaccac taaaccaaat caacaataca atggaaatcg ccccaacaaa
    24421 gttaccgaaa tacaccacta cccagttttt aaacatctgt aaccagttaa ttctttggct
    24481 ggctctggct acaatcgtaa gtgttgatga ggtaaaaagt tctgccccaa acaccacaca
    24541 cataatcacg ccgagtgaaa ataccaaacc accaatcagt ttagccatac cccaaggcat
    24601 ttggctcgca cccacttggg ttgtggtata aaatacaaat gctattgcaa taaaaccgcc
    24661 cgcagtaatg gcagagagaa aggaatataa ttgatttttt gttgctttat aaaccgcacc
    24721 atcttctgcg atttttgcca tttcagcagg agaaaacatc agacaacctt aacaatgaga
    24781 attgaaaaac cgatatatta tgtagaaatt atagacctct tgagataatc ttcaaataaa
    24841 aatattacac aa
//
LOCUS       DANLVT010000026        24257 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.026, whole genome shotgun sequence.
ACCESSION   DANLVT010000026 DANLVT010000000
VERSION     DANLVT010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 24257)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24257)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24257
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.026"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            120..638
                     /gene="hutZ"
                     /locus_tag="PXC99_000891"
     CDS             120..638
                     /gene="hutZ"
                     /locus_tag="PXC99_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization protein HutZ"
                     /protein_id="HDL5417365.1"
                     /translation="MTTNRQEVLQNRLGPEIEELKQQIKTIMLATIDKDGVPNVSYAP
                     FVINNGEYQVLITTIARHARNLQEVPKVSLMLIEDESKSRQIFARRRLTFDATVRMIE
                     RTDEEWNNSIAALKARHGDLVDELSNMQDFKLFSFKPTAGLFVKGFGKAFDVGVDDLI
                     NVVHLDQGHQTA"
     gene            788..3400
                     /gene="pepN"
                     /locus_tag="PXC99_000892"
     CDS             788..3400
                     /gene="pepN"
                     /locus_tag="PXC99_000892"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HDL5417366.1"
                     /translation="MQPKAKLRKDYRAPDFTITDIYLDFQLDPDRTFVTSKLTVVRKN
                     PEATTLRLDGHSFDFLSLKYNGEPFSAFQKDDESLTLNLADVPAERFELEIETALNPA
                     QNTSLQGLYKSGDGFCTQCEAEGFRQITYMLDRPDVLAKYTTKITASKSKYPYLLSNG
                     NHIAQGDLHDGRHWVEWQDPFFKPSYLFALVAGDFDLLQDKFITKSGREVTLEIYVDR
                     GNLDRAPWAMESLKRSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKF
                     VLAKPETATDTDYLDIEAVIAHEYFHNWTGNRITCRDWFQLSLKEGLTVFRDQEFTSD
                     LWSRSAKRIEDVRLLRTVQFAEDASPMAHPIRPEKVIEMNNFYTVTVYEKGAEIIRMI
                     HTLLGEEKFQQGMQLYVARHDGSAATCEDFVKAMEDASGVNLEQFRRWYSQSGTPELT
                     ISDEYDETRKAYRLHISQMTPATHDQMDKLNLHIPLKVALYGEQDGKRIPLQYELLTV
                     SDVLDVTAEHQTFEFHNVTQRPVPALLCDFSAPVRLDYNYTTEQLLTLLKHAENDFVR
                     WDAAQMLYTNELRENLSRYQQHQPLSFSEGLVNALTFVLDNSASLPELTALTLTLPKE
                     TEFAESFKTIDPQGIAVVREFMQHSIAHALQDKLLAVYHQNQCGEYQVVAEDIAKRAL
                     RNACLSYLAFTDLGNALVHKHYNNADNMTDTLAALQAATKAQLSCRDALLADFEQKWK
                     HDGLVMDKWFMLQATRPDDDVLSIVQNLMEHPSFNFNNPNRLRSLVGAFCGQNPKAFH
                     AIDGSGYRFLVDTLIKLNESNPQVAARLIEPLIKLSRYDNQRQTLMRRGLERLRELDN
                     LARDLFEKIEKALD"
     gene            complement(3460..3732)
                     /locus_tag="PXC99_000893"
     CDS             complement(3460..3732)
                     /locus_tag="PXC99_000893"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HDL5417367.1"
                     /translation="MVAKLFSVYGRVQGVAFRFFTLQEANRLGIKGYVRNRDDGSVEV
                     VAEADEQTIAQLENWLQQGSPAAKVERVIVSDYLGSERFKRFEVRY"
     gene            complement(3786..5420)
                     /locus_tag="PXC99_000894"
     CDS             complement(3786..5420)
                     /locus_tag="PXC99_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005700110.1"
                     /note="is involved in the transport of the murein peptide
                     L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter substrate-binding
                     protein OppA"
                     /protein_id="HDL5417368.1"
                     /translation="MQSKFSLSLLTTSLVLGLSANVFAAKVPEGTTLAEKQEITINNG
                     FEPSSFDPHKIEGVPESQVAYQLFEGLVTKDSDGNIQPGVAESWENTPDYKTWTFKLR
                     QDAKWSNGDAVTAHDFVFAWQRLVNPLTASPYSSYLTYLNVENAQDIIDGKKKPEELA
                     VKAIDDHTFQVQLSQPVPYAVELATHSSLLPVHKATVEKHGDAWVQKGNLVGNGAYTL
                     ADHVINEKIVFERNKNYWNDKETVINKATFLAIANAATDVSRYRAGDLDMTNYALPPE
                     QFATLKKEIPNEVFTARTLSTYYYEINHKRAPFDNVKVREALNLALDRTIITDKVLGQ
                     GQTPTYVFTPPYIHEGEKIQQPAYSKDSMADRKAKALKLLEEAGYSKANPLKFTILYN
                     TNDNHKKIAIAVSSLWKQGTDGIVDVKLENQEWKTFLDTRRNANYDVSRAGWSADYNQ
                     ATTFVNYFLSNSSNNTAFYKSQAYDDAVAESYKATDAAGRAAAYAKAEEQLAKDYAII
                     PIYNYVNPRLVKPYVKGYEGKDPQDDILLRNLYIVK"
     gene            5847..7265
                     /gene="leuC"
                     /locus_tag="PXC99_000895"
     CDS             5847..7265
                     /gene="leuC"
                     /locus_tag="PXC99_000895"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HDL5417369.1"
                     /translation="MQQAKTLYQKLFDSHVVYEAEGETPIIYINRHLIHEVTSPQAFD
                     GLRVAGRQVRQVSKTFGTMDHSISTQVRDVQQLEGQAKIQVLELEKNCEETGIPLFDI
                     TKKQQGIVHVMGPEQGLTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTL
                     KQARAKSMKVEVRGKVNPGITAKDIVLAIIGKTTMAGGTGYVVEFCGEAIRDLSMEGR
                     MTVCNMAIEFGAKAGIVAPDETTFAYLKDRPNAPKGQDWEDAIEYWKTLKADEGAVYD
                     AEVILEAKDIAPQVTWGTNPGQVIGIDDVIPNPEDMADPVTRASAEKALAYIGLEAHT
                     DMKDVPVDQVFIGSCTNARIEDLRAAAAVMKGRKKADNVKRILVVPGSGLVKEQAEKE
                     GLDKIFIEAGAEWRNPGCSMCLGMNDDRLGEWERCASTSNRNFEGRQGRNGRTHLVSP
                     AMAAAAAVFGKFMDIRKVSLNA"
     gene            7278..7880
                     /gene="leuD"
                     /locus_tag="PXC99_000896"
     CDS             7278..7880
                     /gene="leuD"
                     /locus_tag="PXC99_000896"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HDL5417370.1"
                     /translation="MAGIKQHSGLVVPLDAANVDTDAIIPKQFLQAITRVGFGKHLFH
                     EWRYLDAEETQINPDFVLNFPQYQGATILLARKNLGCGSSREHAPWALADYGFKVMIA
                     PSFADIFYNNSLNNHMLPIKLTEEEVEEIFQWVWANEGKQIHVDLEAMTVTVGEKVYT
                     FELDEFRRHCLLNGLDNIGLTLQHEAAIAAYEKNIPAFLR"
     gene            complement(7952..8416)
                     /locus_tag="PXC99_000897"
     CDS             complement(7952..8416)
                     /locus_tag="PXC99_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417371.1"
                     /translation="MNKFKIALMATVAIGLFACTPSPQSNSTKQQAQVGYLKQNISQA
                     ELNNPKDFKRYSYYCKNFATGSSSYLATYFPLWSESRKQENFGIYFQLDGGKVYPFDH
                     LANISLNARATKFEVRYRSYQPIEGSFVELVAREFTSTYYKNNVPWLECREG"
     gene            complement(8440..8946)
                     /locus_tag="PXC99_000898"
     CDS             complement(8440..8946)
                     /locus_tag="PXC99_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417372.1"
                     /translation="MADPHIQSPMDFWDYLTVIIYRSGFVLATLMLLLLPYYPQTAQY
                     GLLVSGTMLASSLHLYAKSFRLIFQFSVWIGLLGAVFNFPLLAFGAMLLVIGGLSYKE
                     YFCFRVFGLNFQPLLVAVLWIAFALEWSLLVQILSLVCGLLLLVLSIQKWRMPLHFDI
                     GDKSKYQI"
     gene            complement(8969..9946)
                     /gene="dusA"
                     /locus_tag="PXC99_000899"
     CDS             complement(8969..9946)
                     /gene="dusA"
                     /locus_tag="PXC99_000899"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HDL5417373.1"
                     /translation="MTNEIQPFYRGRFSVAPMLDWTTRHCRYFHRQFSRQALLYTEMI
                     TAPAIIHAKYDLLEYDPSENPVALQLGGSDPAQLAHCAKLVAERGYAEINLNVGCPSD
                     RVQNGMFGACLMAKADLVADCIKAMQDAVEIPVTVKHRIGIDDLDSYEFLCDFIEKVQ
                     PYSNDFIVHARKAWLTGLSPKENREIPPLDYDRVYQLKRDFPHLKISINGGIKTIEEI
                     KQHLQFVDGVMVGREAYQNPSMLGEIDSQIFNENRPLVTAKEAVEKMFPYIERELAKG
                     VYLNHIVRHMLGAFQHCKGARQWRRHLSENATKSGAGVEVVEQALAFIG"
     gene            10297..11274
                     /locus_tag="PXC99_000900"
     CDS             10297..11274
                     /locus_tag="PXC99_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HDL5417374.1"
                     /translation="MSRNLFQKRLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQ
                     DYRTTINDHERHVLTRAMLAISQVEVNVKRFWGELYCYFPKPEMDDVGGTFAESEVRH
                     KDAYSFLLEKLGLNEMFSQIHEIEPLMNRIRYMESFMKDKDAGKGEFVLSLVLFSLFV
                     EHISLFGQFIIMMSFNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELF
                     TPEFFEDLQTLANQAFEAERGILDWIFEEGDLSFITKATVENYIKNRYNNSLSILGLE
                     PPHDIDPELLKETEWFDIEILSTKETDFFNKRSTDYSKKMKQITADDLF"
     gene            11261..12928
                     /locus_tag="PXC99_000901"
     CDS             11261..12928
                     /locus_tag="PXC99_000901"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HDL5417375.1"
                     /translation="MTYFNTDRPDFHWLNEDSRLFLQRGYLLEGTTALDRIRFIAEHA
                     ERKLGIEGYADKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTT
                     AEVGMMSKIGGGTSAYFGDIRPRGSLIKNNGKSDGSFNFSKLFDTVIDVISQGTSRKG
                     QFAGYIDIEHGDIDEWLDIHTEGNPIQLMYYGVCVGHDWLESMKAGDPYKRQLWAKLL
                     QRKTETGIPYLFFKDNANAGRPDVYKDKNMTIHASNLCTEIMLPSSNEESFVCCLSSM
                     NLLYFDEWKDTDAPETLTYFLDVVMSEFIEKSQSIPFLDRANRFARRHRALGLGVLGW
                     HSYLQANNIAFDSFQAMQKNNEIFKTLQAKTLKASQELAQRFGEPEILEGYGRRNTTL
                     MSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLQEKGLDTEEI
                     WTSILQNDGSVQHLEQLSEHEKEVFKTFAEISQLSVIQQAAQRQKYIDQGQSINVMIH
                     PATPARDLNQLYLTAEELGLKSIYYQNSMSAAQVFNRNLLSCSSCEG"
     gene            12932..13351
                     /locus_tag="PXC99_000902"
     CDS             12932..13351
                     /locus_tag="PXC99_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417376.1"
                     /translation="MGNLSHTSPNTIVEVVGEFPEITSSGYTFDKGPIQLRIGKHTAP
                     NKGFGVKHIEAEHMQEILNLGFTSVNEFVKAIIVENAKIFCEFSDLKGNHRPIILKAS
                     IGIVVLERKFLESGTIYSVVTAYRRTNPHGIQIGTMK"
     gene            complement(13586..14347)
                     /gene="nudC"
                     /locus_tag="PXC99_000903"
     CDS             complement(13586..14347)
                     /gene="nudC"
                     /locus_tag="PXC99_000903"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="HDL5417377.1"
                     /translation="MNKGYWIIVSDFDIALEAGEIPFGSAEELGLSGREKLTIGQYQG
                     SPAYLVKALESDNQREFAYLRSQINRPPELSHLLHRAVSLNHFFQTHQFCGKCGEKTI
                     LASDEIAIYCNACGNRAYPTISPSIIVAVRKGRQILLANHLRHKGTIYTTLAGFVEAG
                     EAVETAVHREVFEETGIKVKNVRYFGSQPWAFPNSLMLGFLADYESGEIQLQEEEICD
                     AKWFDCEESLPEIPQQGTIAFELIQATLKLCRESK"
     gene            complement(14340..15023)
                     /locus_tag="PXC99_000904"
     CDS             complement(14340..15023)
                     /locus_tag="PXC99_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HDL5417378.1"
                     /translation="MKQPTFKRMTNKRSNFAKNLQKNPQKRPLTFAETTLVLLNKPYD
                     VLTQFTDEQGRKTLKDFITMPNIYPVGRLDRDSEGLLLLTNNGEIQHRLAHPKFDKQK
                     TYWVQVEGVPQPEDLAKLAKGVELKDGLTKPAKVRAIATPDFAWNIAPQIRERKTIPT
                     SWIELIISEGKNRQVRRMTAHIGFPTLRLIRVGIGQFRLGNLGCGEFQVLSENEKRKL
                     FTQLGLKDE"
     gene            complement(15020..15868)
                     /locus_tag="PXC99_000905"
     CDS             complement(15020..15868)
                     /locus_tag="PXC99_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5417379.1"
                     /translation="MEKRTLALLKVHGTAVLFGASGIFGALIQSSAETIVLGRVMIAF
                     AIISLYFLWKKQPLVKLNLQQMAQLAFSAALLAAHWVTFFVAVKVGGVAVATLGFASF
                     PAFVALFESLFFREKLRFREVVLLIAITVGLILVTPEFTFGNQATQGLLWGVLSALVY
                     GILAVANRRTMSKISGVQASWWQYIFATLFLLPLSITEFPSVSTQDWFWIFCIGFLCT
                     TLAYTLFISSLDTINARTASMIISLEPVYAIVIAWLCFNEVPTLKMIIGGLIILLSVA
                     WANLKK"
     gene            complement(15868..16353)
                     /locus_tag="PXC99_000906"
     CDS             complement(15868..16353)
                     /locus_tag="PXC99_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HDL5417380.1"
                     /translation="MPILAILFGIFFYIYCEISLLVNIGSIIGVLPTILLLVVISFLG
                     LWIVKLRGVYTLFSIKQDLSQGKIPTEAVGNSVMFIVAGILLIIPGFLSDILAILCVL
                     PFSRKWIQAFVINSVKNKVFMHFTAQTSSFSVTSAQDSNTFDAEFERKPDEQDQHNRI
                     K"
     gene            complement(16355..17677)
                     /gene="pepQ"
                     /locus_tag="PXC99_000907"
     CDS             complement(16355..17677)
                     /gene="pepQ"
                     /locus_tag="PXC99_000907"
                     /EC_number="3.4.13.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro dipeptidase"
                     /protein_id="HDL5417381.1"
                     /translation="MKNLFSTHLARLQQTVQSLLENAFLDGLWIYAGKAKTLFLDDQT
                     APFKINPYFNYFFPYPQAENCWLFLDGKNKPKIYFYAPEDYWVSTLKVPTEAFFAAEF
                     EWVLLRAENEIATFIQNPTACAFIGEDVELAKKLGFSHINPQKVLNSLNFARSIKTEF
                     EIESIYQAQFSALKGHQVAKEAFFAGKSEFEINLEYLKATQQSDLNVPYGNIVAINQN
                     GAVLHYTALDFDTHAKRHSFLIDAGTTVNGYASDLTRTYAFDSGSEFAELVAKMEQLK
                     LQIIAELSIGVNYLHYHTRMQQMISQLLAEHQFIHLSAEQIFEQGISRTFFPHGLGHL
                     LGIQVHDVGGFQQNARGSHKAPPEVYPSLRCTRELQENMVLTIEPGFYFIEMLLKPWK
                     NSALSSAFNWQKIEAFKAFGGIRTEDNIVMRANGAENLTANAAATLGG"
     gene            17688..17930
                     /gene="tusA"
                     /locus_tag="PXC99_000908"
     CDS             17688..17930
                     /gene="tusA"
                     /locus_tag="PXC99_000908"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA"
                     /protein_id="HDL5417382.1"
                     /translation="MTQLTVNKELDTLGLRCPEPVMLTRKTIRNMEEGEILHIIADDP
                     ATTRDIPSFCEFMDHQLIQKEVDSTPYHYWIKKGLE"
     gene            complement(17997..18428)
                     /gene="rraB"
                     /locus_tag="PXC99_000909"
     CDS             complement(17997..18428)
                     /gene="rraB"
                     /locus_tag="PXC99_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E inhibitor RraB"
                     /protein_id="HDL5417383.1"
                     /translation="MYNLDELRTETDETISSLLADGSDPEALYIIEHHVAHHDFDKLE
                     KLVVDAYKLGYEISEAEEVEDENGKVIFVCDIVSEIHLNADLITAQQKELLPLIEKAG
                     AEYEGWGTYFEDPNADEDEYGDDGEFFDDENDDFEDEPRRH"
     gene            complement(18443..19054)
                     /locus_tag="PXC99_000910"
     CDS             complement(18443..19054)
                     /locus_tag="PXC99_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HDL5417384.1"
                     /translation="MKLNYHKTHFLTSAPDIRHLPEDTGVEIAFAGRSNAGKSTALNA
                     LTNQKSLARTSKTPGRTQLINLFKVETNCKLVDLPGYGYAAVPEQMKIQWQKALGEYL
                     QKRECLGGVVILMDIRHPLKDLDQQMIEWAVSANLPVLLLLTKADKLSQSARSKQVKM
                     VREAILPFQGDIQVEAYSALNKIGIDKLSNKLDSWFAPKLITE"
     gene            complement(19056..19472)
                     /locus_tag="PXC99_000911"
     CDS             complement(19056..19472)
                     /locus_tag="PXC99_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HDL5417385.1"
                     /translation="MSWYKALFSFNGRLNRRGFWIGFGIHFLFLFMVAMWINLAELSL
                     LSVLPLIITGFSLSAIIIKRLHDRNRSAKALLMALVPIICYLAAPYSQGIMQILLGQV
                     MPAFIGMLLFLEWGVFAGNPEPNQYGEQGLSFKFRE"
     gene            complement(19476..20306)
                     /locus_tag="PXC99_000912"
     CDS             complement(19476..20306)
                     /locus_tag="PXC99_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HDL5417386.1"
                     /translation="MFEYFLSLSPIWQAFLAGLFTWGCTIFGSSFVYFFKSVNRKLLD
                     SMMGFAAGVMIAASFWSLLAPSLEYAEADYGSLAWLPAAIGFLAGGAFIRLIDYVVPH
                     LHLSKPIEQAEGNDQLKQGLSKSTLLFLAITIHNIPEGLAIGVAFGALATQVSGVDAS
                     IMGAIGLAIGIGLQNIPEGSSLVLPIRGEGHSRKKAFWYGSMSAVVEPIAAVIGAVFV
                     LSMTAILPYALAFAAGAMIFVVVEELIPESQSSGNTDIATLSLMLGFVVMMVLDVALG
                     "
     gene            complement(20643..20758)
                     /gene="rrf"
                     /locus_tag="PXC99_000913"
     rRNA            complement(20643..20758)
                     /gene="rrf"
                     /locus_tag="PXC99_000913"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(20920..23818)
                     /locus_tag="PXC99_000914"
     rRNA            complement(20920..23818)
                     /locus_tag="PXC99_000914"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(24061..24136)
                     /locus_tag="PXC99_000915"
     tRNA            complement(24061..24136)
                     /locus_tag="PXC99_000915"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(24100..24102),aa:Glu,seq:ttc)
BASE COUNT         7168 a         5475 c         4705 g         6909 t
ORIGIN      
        1 attaataaga tgtattatca gttacatcac atttatagtc aataatgatt ctcatatgga
       61 ttgaaagttt tcactcttta tagtaatcta aaaaaacact atttaaattg aggtatttta
      121 tgacaaccaa ccgtcaagag gtcttacaaa accgtttagg tccagaaatt gaagaattaa
      181 aacaacaaat caaaactata atgcttgcaa ccatagataa agatggtgta ccgaatgtga
      241 gctatgcccc ttttgtaatt aataacggcg aatatcaagt cttaatcact actattgccc
      301 gtcacgctcg taatttacaa gaggtgccaa aagtctcttt aatgctaatt gaggatgaaa
      361 gtaagagccg tcaaattttt gcccgtcgtc gcttaacctt tgacgcaaca gtgcgaatga
      421 ttgaacgtac tgatgaggaa tggaataata gcattgcagc acttaaagct cgtcacggcg
      481 atttagttga tgaactgtca aatatgcaag atttcaagct ctttagcttt aagccaacgg
      541 caggcttatt tgtaaaagga tttggtaaag cctttgatgt tggtgttgat gacttaatta
      601 atgtcgttca tttagaccaa ggccaccaaa ctgcctaatt gcgaaataaa ctcacggcta
      661 taaataatcc tatttatagc cgtttttatt gcgacaagcg gtcaaatttt ttggaaaatt
      721 taccgctatt ttagtacaat aacgacacta ttctatgagc taaacgcaac taaaaaaagg
      781 aaatcctatg caacctaaag cgaaactcag aaaagattat cgagctcccg atttcactat
      841 tactgatatt tatcttgact tccaacttga cccagatcgc acttttgtca cctcaaaact
      901 aactgtcgtg cgtaaaaatc ctgaggcgac aacacttcgt ttagacggtc atagtttcga
      961 tttcctttcg cttaaatata acggcgagcc gttttccgcc tttcaaaaag atgatgaatc
     1021 tttaacctta aatttagccg atgtgcctgc cgagcggttc gagcttgaaa ttgaaaccgc
     1081 attaaatccg gcacaaaaca cctcgttaca aggtttgtat aaatcgggcg acgggttttg
     1141 cacccagtgt gaggctgaag gtttccgcca gattacctat atgctcgacc gccctgatgt
     1201 acttgcaaaa tatacgacaa aaatcaccgc tagtaagagc aaatacccgt atctgctttc
     1261 taacggcaac cacattgccc aaggcgactt gcacgatggc agacactggg tggaatggca
     1321 agatccgttc tttaaaccaa gctatttatt tgccttggtt gcgggggatt ttgacttact
     1381 ccaagataaa ttcatcacca aaagcggacg tgaagtcacg cttgaaattt atgtcgatcg
     1441 tggaaattta gaccgtgcac cttgggcgat ggagagctta aaacgttcaa tgaaatggga
     1501 tgaagagcgt ttcggtttgg aatacgattt agatatttat atgattgttg ccgttgattt
     1561 cttcaatatg ggagcaatgg aaaacaaagg gttaaatatt ttcaattcca aatttgtatt
     1621 ggcaaaaccg gaaaccgcaa ccgatacgga ttatttagat attgaagcgg tgattgccca
     1681 cgaatacttc cataattgga cgggcaaccg cattacctgc cgtgattggt tccaactaag
     1741 cttaaaagag ggcttaaccg tcttccgtga tcaggaattt acctccgatt tatggtctcg
     1801 ttcggcaaaa cggattgaag atgtgcgttt actgcgtacc gtacaatttg ccgaagatgc
     1861 cagcccgatg gctcacccga ttcgcccgga aaaagtgatt gaaatgaata atttctacac
     1921 cgtgactgtg tatgaaaaag gggcggaaat tattcgtatg attcacaccc tgttaggcga
     1981 agaaaaattc cagcaaggta tgcaacttta tgtggcaaga cacgatggtt ctgcggcaac
     2041 ttgtgaagat ttcgttaaag caatggaaga tgcttcaggc gttaatcttg aacaattccg
     2101 ccgttggtat agccaatccg gcacgcctga gctcaccatt tccgatgaat atgatgaaac
     2161 ccgcaaggca taccgcttgc atatttcaca aatgacaccg gcaacccacg atcagatgga
     2221 taaactcaat ctgcatattc cgcttaaagt agcgttatat ggtgaacagg acggtaaacg
     2281 cattccgtta caatatgaat tattgaccgt aagcgatgtg ttagatgtaa ccgcagaaca
     2341 ccaaaccttt gagtttcata atgtaacaca acgcccggtg cctgcattac tgtgtgattt
     2401 ctctgcaccg gtacggttag attacaacta taccaccgag cagcttttaa ccttactcaa
     2461 acacgctgaa aatgattttg tacgctggga tgcagctcaa atgctctata ccaatgaact
     2521 gcgtgaaaat ttaagccgtt atcagcaaca tcaaccactc agcttctcag aagggttggt
     2581 gaatgcccta acgttcgtgt tggataactc agcaagcctg ccggaactaa ctgcattaac
     2641 cctcacattg ccaaaagaaa ccgagtttgc agaatcgttc aaaaccattg acccacaagg
     2701 tattgcggtt gtgcgtgaat ttatgcagca ttccattgct cacgccttgc aagataagtt
     2761 attagcggta tatcaccaaa accaatgcgg ggaatatcaa gtcgtggctg aagatattgc
     2821 taaacgagcc ttgcgtaatg cttgcttaag ctatttagcc tttactgatt taggcaacgc
     2881 gttggtgcat aagcattaca ataatgccga taatatgact gatacgcttg ctgcattaca
     2941 agccgcaacc aaagcccagc taagttgccg tgatgcatta ttagccgatt ttgagcaaaa
     3001 atggaaacat gatggtttag tgatggataa atggtttatg ctacaagcca cccgaccgga
     3061 cgacgatgtg ttatccatcg tgcaaaattt aatggaacac ccaagtttta actttaataa
     3121 cccgaaccgt ttacgttcat tagtaggtgc attctgcggt caaaacccga aagccttcca
     3181 cgccattgac ggttcaggct atcgtttctt ggtagatacg ctgattaaac ttaacgaaag
     3241 taacccacaa gttgctgctc gacttattga gccgttaatt aaactctcac gctacgataa
     3301 ccaacgccaa accttgatgc gtcgtggtct agaacgcctg cgtgagctgg ataatttagc
     3361 acgagatctg tttgagaaaa ttgaaaaagc gttagattaa accaagcaat acaagcggtg
     3421 tcgtttgcaa atttttttac aaatgacacc gcttgttagt taatacctta cctcaaacct
     3481 tttaaacctt tctgagccaa gataatcgct cacaattacc cgttccacct ttgcagcagg
     3541 tgagccttgt tgtaaccaat tttccagttg agcgattgtc tgttcatccg cttcagctac
     3601 cacttctacc gagccgtcat cacgatttct gacatagcct tttatgccta atcgattcgc
     3661 ttcctgcaag gtaaaaaacc gaaaagcgac accttgaacc cgtccgtaaa ccgagaataa
     3721 ttttgcgacc attcttcccc cataaaaata ggctgcttat ttttcaataa acagcccata
     3781 atgtcttatt tcacgatgta gaggttacgc agtaaaatat catcttgcgg atctttaccc
     3841 tcatagcctt tcacgtaagg tttcaccaaa cgtgggttta catagttata aatcggaata
     3901 atcgcataat ctttggctaa ctgctcctct gcttttgcat aagcagctgc acgaccagct
     3961 gcgtctgtcg ctttgtaaga ttctgctacc gcatcatcat aagcttggct cttataaaac
     4021 gcagtattgt tgctggagtt cgataagaaa tagttcacaa aggtggttgc ttggttatag
     4081 tctgccgacc aacctgcacg agaaacatca taatttgcat tgcggcgggt atctaagaat
     4141 gttttccact cttggttttc taatttcaca tcaacaatgc cgtctgtgcc ttgtttccat
     4201 aatgatgaaa ctgcaatcgc aattttcttg tggttgtcgt tggtattata aagaatagta
     4261 aattttaacg ggttcgcttt actgtaaccg gcttcttcca ataatttcaa cgctttggct
     4321 tttctatctg ccattgaatc tttggaataa gcaggttgct ggattttttc accctcgtga
     4381 atataaggcg gtgtaaatac ataagttggt gtttgacctt gtcctagcac tttatcggta
     4441 ataatggtgc gatctaaagc taagtttaac gcctcacgca ctttcacatt atcaaacggt
     4501 gctcgtttat ggttaatttc atagtaataa gtagaaaggg ttcttgccgt aaacacttcg
     4561 tttggaatct cttttttcaa ggttgcaaac tgctccggtg gaagagcata gttggtcata
     4621 tccaaatcac cggcacggta acgtgaaaca tcagttgcgg cattagcaat ggctaagaaa
     4681 gtcgctttat taatcacggt ttctttatca ttccaataat ttttattacg ctcaaacacg
     4741 attttttcat taataacgtg atcggctaag gtataagccc cgtttccaac cagattgcct
     4801 ttttgcaccc acgcatcgcc gtgtttctca acggttgctt tgtgtacagg taataaagaa
     4861 gagtgtgttg ccagctcaac tgcatacggg acaggttggc ttaactgcac ctggaaagta
     4921 tgatcatcaa tcgctttaac tgctagttcc tccggttttt tcttgccgtc aataatatct
     4981 tgagcatttt ctacattgag ataagttaaa tagcttgaat aaggtgaagc cgtaagtgga
     5041 ttaaccaaac gctgccaagc aaatacgaaa tcgtgagcag ttacggcatc accgtttgac
     5101 catttagcgt cttggcgtaa tttgaacgtc cacgttttgt aatccggtgt attttcccaa
     5161 ctttctgcca cacccggctg aatattgccg tcagaatctt tcgttaccaa tccttcaaat
     5221 aactgataag caacttgcga ttccggcacg ccctcaattt tatgtggatc aaaacttgat
     5281 ggctcaaaac cattattaat cgtaatttct tgtttttctg caagcgttgt tccttcaggc
     5341 actttggctg caaacacatt tgccgataag cctaacacta atgaggttgt taataaggaa
     5401 agcgagaatt ttgactgcat atttgatctc cattgatgaa tattggcttg caaccagccg
     5461 atttgttcta attaattttt ttaagtctag gcattattat tttgattgca aggaattttt
     5521 ttaaaaaatg tgatagatat cacctttcaa tgcaaaaatt gcataaaaaa atcccgaaga
     5581 aaatagctct ataaactctg ataatggcta gataacttgc tgtaactttc taattattca
     5641 gaataatatt ctgcacatta ttaacgaata ctatttttag gcttatttag cagaataaaa
     5701 acccttattt agcataaaaa tactgtttta ctttcatttt tttaatcgtt atattcactc
     5761 catatcagca agcggtcatt tttgcaaaat tttttgcaaa tttaaccgct tgtattaaaa
     5821 gttacccttt tgagttggaa cattttatgc aacaagccaa aaccctatat caaaaactat
     5881 tcgactcaca cgttgtgtat gaagccgaag gcgaaacgcc gattatttat attaaccgcc
     5941 acttaattca cgaagttacc agcccgcaag cgtttgacgg cttgcgtgtt gccggtcgcc
     6001 aagttcgcca agtcagtaaa accttcggca caatggacca cagtatttca acccaagtgc
     6061 gtgatgtaca gcaacttgaa gggcaagcga aaattcaagt attagaatta gaaaaaaact
     6121 gcgaagaaac cggtatccca ctgtttgaca tcactaaaaa acaacaaggt atcgttcacg
     6181 taatggggcc ggagcaaggc ttaactttac ccggtatgac cattgtatgt ggtgactcgc
     6241 acaccgccac tcacggggcc tttggtgcgt tagccttcgg tatcggtact tccgaagtgg
     6301 aacacgtttt agccacccaa accttaaaac aggcccgtgc aaaaagtatg aaagtggaag
     6361 tccgtggcaa agtaaacccg ggcattaccg caaaagatat tgtgcttgcg atcatcggta
     6421 aaacaactat ggctggcggt acaggctatg tagtggaatt ttgtggcgaa gcaattcgtg
     6481 atctttcaat ggaagggcga atgacagtgt gtaatatggc gattgagttt ggtgcgaaag
     6541 ccggtattgt tgccccggat gaaaccacgt tcgcttactt gaaagaccgc ccaaatgcac
     6601 caaaaggtca agattgggaa gatgccattg aatattggaa aaccctcaaa gccgatgagg
     6661 gtgcagttta cgatgcggaa gtgatcttag aagcaaaaga cattgctcca caagtgactt
     6721 ggggaaccaa cccggggcag gtgatcggta ttgatgatgt aattccaaat ccggaagata
     6781 tggccgatcc tgttactcgt gcctctgcgg aaaaagcctt agcttacatc ggcttagaag
     6841 cccatacaga tatgaaagat gtaccggttg atcaagtctt tattggttct tgtactaatg
     6901 ctcgtattga agatttgcgt gctgcggcag cagtaatgaa agggcgtaaa aaagccgaca
     6961 atgtaaaacg tattctcgtt gtgccaggtt caggtttggt aaaagagcaa gcagaaaaag
     7021 agggcttgga taaaatcttc attgaagccg gtgcagaatg gcgtaacccg ggttgctcaa
     7081 tgtgtttggg aatgaacgat gaccgcttgg gcgaatggga acgttgtgcc tctacgtcta
     7141 accgtaactt tgagggcaga caaggacgta acggtcgtac ccacttagtc agcccggcaa
     7201 tggcggctgc ggcggcggtg ttcggtaaat ttatggatat tcgcaaagtg tcattaaacg
     7261 cataatagga ggaaaaaatg gcaggtatta aacaacattc aggcttggtc gttcctcttg
     7321 atgcagcgaa cgtagacacc gatgcaatca ttccaaaaca atttttgcaa gccattactc
     7381 gagtcggctt tggtaagcac cttttccacg aatggcgtta tttagatgcg gaagagactc
     7441 aaatcaaccc cgatttcgta ctgaacttcc cacaatatca aggtgcaacc attttactcg
     7501 cccgtaaaaa tttaggctgt ggctcttctc gtgagcacgc cccttgggca ttggcagatt
     7561 acggttttaa agtaatgatc gccccaagtt ttgcggatat tttctacaat aacagcttaa
     7621 ataaccatat gttgccgatt aaattaaccg aagaggaagt cgaagagatc ttccaatggg
     7681 tgtgggcaaa tgaaggaaaa cagatccacg ttgatttaga agcgatgact gtgactgttg
     7741 gcgagaaagt ttataccttt gagttagacg aattccgccg ccactgctta ttaaacggtt
     7801 tggataatat cggcttaacc ctacaacacg aagctgcgat tgctgcttat gagaaaaaca
     7861 ttccggcatt tttacgctaa ttaaaataca aaaaaacggc taacatcttt aaggcgttag
     7921 tcgttttctt tttagccatt ttctttggca attagccttc tcggcactct aaccaaggca
     7981 cattattttt gtaataagtt gaagtaaact ctcgtgccac taactctaca aaactgcctt
     8041 caatcggctg ataagaacga taacgcactt caaattttgt tgctcttgca ttcaaactga
     8101 tgttggcaag atggtcgaac ggataaacct ttccgccatc aagttgaaaa tagataccaa
     8161 aattctcttg cttacggctt tcagaccaaa gtggaaaata ggttgccaaa tatgaactgc
     8221 tgcctgttgc aaaattctta caataatagc tataacgctt aaaatctttc ggattattca
     8281 attccgcttg gctgatattc tgtttcaaat atccaacctg tgcttgttgc ttagttgagt
     8341 ttgattgtgg tgagggcgta caagcaaata agccaattgc cactgttgcc attaaagcaa
     8401 ttttgaattt attcataaaa atcccgataa aatattaaat taaatctgat atttgctttt
     8461 atcgccaata tcaaaatgca gcggcattcg ccatttttga atactcagca caagaagcaa
     8521 caagccacag acaaggctta aaatttgcac caataaagac cattctagtg caaaagcaat
     8581 ccacaatacc gccactaaaa gcggttggaa atttaagccg aatactctaa aacagaaata
     8641 ttctttatag cttaatccgc cgatcaccag tagcattgcc ccgaacgcaa gcaaagggaa
     8701 attaaacaca gcaccaagta agccaatcca aacagaaaat tggaaaatca ggcgaaacga
     8761 tttggcataa agatgcaaag aagatgccaa cattgtgcca gatactaata aaccatattg
     8821 tgccgtttgc ggataataag gcaataaaag caacatcaat gtagctaaca caaaaccgct
     8881 gcggtaaatg atgacggtta aataatccca aaaatccatt ggcgattgaa tatgtggatc
     8941 tgccataact gcctccttaa acaataaatt agccaataaa cgcaagggct tgttccacta
     9001 cttctacacc ggctcccgac ttagtggcat tttcacttaa atgacgacgc cactgcctcg
     9061 ctcctttgca atgttgaaac gcaccaagca tatggcgaac gatatgattt aaatagacac
     9121 ctttggcaag ctcacgttca atataaggga acatcttttc caccgcttct tttgccgtta
     9181 caagcggtcg attttcatta aaaatttgcg aatcgatctc gcctagcatt gacgggtttt
     9241 gataggcctc acgccctacc attaccccat caacaaactg caaatgctgt ttaatttcct
     9301 caatggtttt aatgccgcca ttgatgctaa tctttaaatg cggaaaatct cgcttgagct
     9361 gataaacccg atcataatct aaaggcggaa tttcacggtt ttccttcggg cttaaccctg
     9421 tcagccacgc cttgcgggcg tgtacgataa aatcattgct ataaggttgc actttttcga
     9481 taaaatcaca caaaaattca tagctgtcta aatcatcaat cccaatacga tgtttaaccg
     9541 tgaccggaat ttccaccgca tcttgcattg ctttaataca atccgccact aaatctgctt
     9601 ttgccatcaa acaagcccca aacataccgt tttgcactcg gtctgacggg caaccgacat
     9661 ttagattaat ctcggcatag cctcgctctg ccaccaattt ggcacaatga gccaactgtg
     9721 ccgggtcgct tccacccagt tgcaaagcca ccggattctc gctcggatca tattccaaca
     9781 aatcatattt ggcgtgaata atcgccgggg cggtgatcat ttcggtataa agcaaggctt
     9841 gacgactaaa ttggcgatga aaatagcggc agtgacgggt tgtccaatct aacattggag
     9901 caaccgaaaa acgtccacgg taaaaaggtt gaatttcgtt agtcataaaa atatcaaaat
     9961 aaagcggtaa aaaatcagta aaaaataacc gcttgtaagc gattcaaaac aagcagccat
    10021 catactcgaa aaagccagat aaacatagtt tcctcaaggc ttccccatct atctgcgcac
    10081 ttttaaaaca accttaaaac acaatatata gtgtttcaac atcaaatcac acacaacata
    10141 ttgaagcaaa aatttacaaa attatttttc tttataaatc aataagctac caaagaccaa
    10201 taaaaaagag tgtttgtcaa gacttgtctt gaaacttttt ttgcatacaa tcatctacca
    10261 gttccaaaca taaactttaa gatagagcct acgaatatgt ctagaaacct cttccaaaaa
    10321 cgcttaaata ttaagccgta tgagtatcct gagcttcttg aatttaaaga tgcaattcgc
    10381 cattcttact ggttacacac cgaatttaac ttcaccggcg atattcaaga ctatcgcacc
    10441 accattaacg atcacgaacg tcacgtgtta acccgagcaa tgcttgcgat ttcacaagta
    10501 gaagtgaatg taaaacgttt ctggggcgag ctatactgct atttcccaaa accggagatg
    10561 gacgatgtag gcggtacttt tgctgaaagt gaagttcgcc ataaagatgc ttactcgttc
    10621 ctattggaaa aattaggcct aaatgaaatg ttcagtcaaa ttcatgaaat tgaaccatta
    10681 atgaaccgca ttcgttatat ggaaagtttt atgaaagata aagatgctgg caaaggcgaa
    10741 tttgttttat cgttagtgct gttctcttta tttgttgagc atatttcatt gtttggacag
    10801 tttattatca tgatgtcgtt caacaagcat aaaaacctgt ttaaagggat ttccaatgcg
    10861 gttgaagcca cctcaaaaga ggaagaaatt cacggtaaat tcggaattgc gttatacgaa
    10921 attttacgtg acgaacacag tgaactattc acaccagaat tttttgaaga tttgcaaacc
    10981 ttggcaaatc aagcgtttga agcagaacgt ggcatcttag actggatttt cgaagaaggt
    11041 gatttaagct ttatcaccaa agcgacggta gaaaattaca ttaaaaaccg ttacaacaat
    11101 tctttaagca ttttagggtt agagccgcca cacgacatcg accctgaatt attaaaagag
    11161 actgagtggt ttgatattga aattctttca accaaagaaa ccgatttctt taacaaacgt
    11221 agcaccgatt attctaaaaa aatgaaacag attaccgcag atgacttatt ttaatacaga
    11281 ccgcccggac ttccactggc ttaatgaaga cagccgttta ttcttacaac gtggctattt
    11341 attggaagga acaaccgcat tagaccgcat tcgttttatt gccgaacacg cagagcgaaa
    11401 actcggcatt gaaggctatg ccgataaatt ctatcactat atggcaagag gctacttctc
    11461 gctttcttcg ccaatttggt caaactttgg cttagatcgt ggcttaccga tttcttgttt
    11521 cggtagctac atcggcgact ctatccatga aattatggtg actaccgctg aagtgggcat
    11581 gatgagtaaa attggcggtg gtacttcggc ctactttggc gatattcgtc cgcgtggctc
    11641 gttaattaaa aacaacggta aatcagacgg ctcatttaac ttcagtaaat tatttgacac
    11701 tgtgattgac gtgatttcac aaggaacatc acgcaaaggt cagtttgccg gttatattga
    11761 tattgagcac ggcgatattg acgaatggct ggatattcac accgaaggca acccaattca
    11821 attaatgtat tacggtgtgt gtgtcggtca cgattggtta gagtcaatga aagccggcga
    11881 tccatacaaa cgtcagcttt gggcaaaatt gttacaacgt aaaaccgaaa ccggtatccc
    11941 ttatttattc tttaaagaca atgccaacgc aggtcgtcct gatgtatata aagataaaaa
    12001 tatgacgatt cacgcctcta acttatgtac tgaaattatg ttgccttcca gcaacgaaga
    12061 aagtttcgta tgctgtttat cgtctatgaa cctactctac tttgatgagt ggaaagatac
    12121 cgatgcacca gaaacattaa cctatttcct cgatgttgta atgagtgaat ttattgagaa
    12181 aagtcaatca attccattct tagaccgtgc aaaccgcttt gcccgtcgcc atcgtgcatt
    12241 aggtttaggc gtgttgggct ggcacagcta tctacaggca aataatattg cctttgacag
    12301 cttccaagcg atgcaaaaaa acaacgagat tttcaaaacg cttcaagcaa aaaccttgaa
    12361 agcctcgcaa gaattggctc aacgcttcgg cgagccggaa attttagagg gctatggtcg
    12421 ccgtaatact acattaatga gtattgctcc gactaaatcc agtagcttta ttttaggcag
    12481 tgtgtcgcca tcggtagagc cgtttaaatc caactactat gtaaaagatt tagcgaagat
    12541 caaaaccgtg tataaaaacc cgttcttaga gaaattactc caagaaaaag ggctagacac
    12601 cgaagaaatt tggacgtcta ttttacaaaa tgatggctcg gttcagcatt tggaacagct
    12661 ttccgagcac gaaaaagaag tatttaaaac ctttgccgaa atcagccaat taagcgtgat
    12721 tcagcaagct gctcaacgtc aaaaatatat tgaccaaggg caaagtatta atgtgatgat
    12781 ccacccagcc acaccggctc gtgatcttaa ccaattatac ttaacagcag aagagctggg
    12841 cttaaaatcc atctactacc aaaactcaat gagtgcagca caggtattta accgtaacct
    12901 attaagctgc tcaagttgcg aagggtaaat aatgggaaat ttatcgcata cttcacctaa
    12961 tactattgtt gaagttgttg gtgaatttcc tgaaataaca tctagtgggt atacctttga
    13021 taaaggtcct attcaattaa gaatcggcaa acatactgct ccaaataaag gctttggtgt
    13081 aaagcatatt gaagccgagc atatgcaaga aattcttaat ctaggattta catcagttaa
    13141 tgaatttgtc aaagctatca tagtagaaaa cgctaaaatt ttttgcgaat tctcagattt
    13201 aaaaggcaat catcgcccta ttattctgaa agcaagtatt ggcattgtgg ttctagagcg
    13261 taagtttttg gaaagcggta cgatatattc agttgtaacc gcttatagaa gaacaaatcc
    13321 tcacggaata caaataggca ctatgaaata aagtacgtta gtgttataat cagttccacg
    13381 caagagcatt tgtagaaaat aacaggcgga tttggttttc tactgtgggc ggcaggtttc
    13441 cgctaacctg taatagctat ttaattttta tattaaatcc tgaacttgaa acagactaag
    13501 ggattgctgc ggtagctaag aatacaaacc tctctataat catatagaga ggttttttct
    13561 tattgatgag cacaagttaa gataattatt tactctcccg acataacttc aaggtagctt
    13621 gaatcagctc aaaagctatt gtgccttgtt gtgggatttc aggtaagctt tcctcacagt
    13681 cgaaccattt tgcatcgcag atttcttctt cctgtagctg aatttcaccg ctttcataat
    13741 ccgctaaaaa acctagcatt aatgaattgg gaaacgccca aggttggctt ccaaaataac
    13801 gcacattttt cactttaatg cccgtttctt caaacacttc acgatgcacc gcagtttcta
    13861 ccgcctcacc ggcttcgaca aaaccggcta aagtggtata aattgtgcct ttatggcgta
    13921 gatgattggc tagtaggatt tgtctgcctt ttcgcaccgc cacaataatt gacgggctaa
    13981 tcgttgggta agctcgattg ccacacgcat tgcagtaaat tgcaatttca tcgcttgcca
    14041 gtatggtttt ctcgccacat tttccgcaaa attggtgagt ctgaaagaaa tggttaagcg
    14101 aaacagctcg atgcaacaaa tgagacagtt cgggtggtcg gttaatttgg cttcttaaat
    14161 aagcaaactc tcgctgatta tccgattcta acgccttcac caaataagcc ggcgagcctt
    14221 gatattgccc gatggttaat ttctcacgtc cacttaagcc cagctcttcc gcacttccga
    14281 atggaatttc cccagcctcc aaggcaatat caaaatcgct gacgataatc caatatcctt
    14341 tattcatctt tcaatcctaa ttgtgtaaac aacttacgtt tttcattttc agatagcact
    14401 tgaaactcac cacagcctaa attgcctaat ctaaactggc ctatcccaac acgaattaac
    14461 cgtaaagtcg ggaaaccgat atgtgcagtc attcttctga cttggcgatt tttcccttca
    14521 gaaataatca attctatcca gctggtcgga atggttttcc gctcacgaat ttgcggggcg
    14581 atattccaag caaaatcggg cgttgctatt gctctgactt tcgcgggctt ggtcaaacca
    14641 tcttttaact ccaccccttt tgctaatttg gcaagatctt ccggttgtgg aacaccctcc
    14701 acttgtaccc aataggtttt ctgcttgtca aatttcgggt gagctaaacg gtgctggatt
    14761 tcgccattat tagtcaaaag caacaatcct tcactgtctc tatctagccg cccgaccggg
    14821 taaatattgg gcatcgtaat aaaatctttt agcgtttttc gcccctgttc atcggtaaat
    14881 tgggttagta catcataagg cttattgagt aacacaaggg tggtttccgc aaaggtaagc
    14941 ggtcgttttt gcggattttt ttgcaaattt ttagcgaaat ttgaccgctt gtttgtcatt
    15001 cttttaaagg ttggttgttt cattttttca ggttcgccca cgcaacagaa agtaaaataa
    15061 ttaagccacc gataatcatt ttaagggttg gcacttcatt aaagcaaagc cacgcgatca
    15121 caatcgcata caccggctcg agggaaataa tcattgaggc agtacgggcg ttgatggtat
    15181 caaggcttga aataaacagc gtataggcaa gggttgtaca taaaaaaccg atacagaaaa
    15241 tccaaaacca atcttgggtg gaaacgcttg gaaattcagt gatggagaga ggcaacagaa
    15301 aaagtgtagc aaaaatatac tgccaccagc ttgcttgcac accggaaatt ttgctcatgg
    15361 tacggcgatt cgctaccgcc aaaataccat acaccaaagc agataacacg ccccacaata
    15421 aaccttgagt ggcttgatta ccaaaagtaa attcaggggt aactaaaatt aaaccaaccg
    15481 tgatggcaat taatagcacc acttcacgaa agcgtaattt ttcacggaag aacaggcttt
    15541 caaataacgc cacaaatgcc ggaaagctgg caaagcctaa ggttgctacc gccacaccac
    15601 ctactttaac cgccacaaaa aaagtaaccc agtgggcagc taataaagct gcagaaaatg
    15661 caagttgagc catttgctgt aagttgagct ttacaagcgg ttgttttttc cataaaaaat
    15721 acaaagagat gatagcaaaa gcaatcatca ctcgcccaag cacaatggtt tcagccgagc
    15781 tttgaattaa tgctccgaag atccccgagg caccaaataa aaccgctgtg ccgtgtactt
    15841 taagtagtgc aagtgttctt ttctccacta tttgatccta ttatgttgat cttgctcgtc
    15901 cggcttgcgt tcaaattctg catcaaacgt gttgctatct tgcgcagatg taacagaaaa
    15961 agacgaagtt tgggcggtaa aatgcataaa caccttattc tttacgctat taattacgaa
    16021 ggcttgaatc cattttcggc taaagggtaa cacgcataaa atcgctaaaa tatcacttaa
    16081 aaagccggga ataatcagca aaatgccggc tacaataaac atcaccgagt tgccgactgc
    16141 ttcagtcggt atcttgcctt ggcttaaatc ttgcttgatg gaaaagaggg tataaacgcc
    16201 ccttaacttc acaatccata accctaaaaa tgaaatcacg accagtaaca aaatcgtggg
    16261 taacacgcca atgatcgagc caatattcac cagcagcgaa atttcgcaat agatataaaa
    16321 gaaaatacca aacagaatcg ctaaaatagg catattatcc tcccaacgtt gcggcagcgt
    16381 ttgccgtcag attttctgcc ccattggctc gcatgacaat attgtcttcg gtacgaatcc
    16441 cgccaaaggc tttgaaagcc tcaattttct gccagttaaa ggcagaagat aaggcactgt
    16501 ttttccaagg cttaagtagc atctcaataa aataaaaacc cggctcaatg gtaagcacca
    16561 tattttcctg tagctcacgg gtacaacgca aacttgggta aacctctgga ggagctttat
    16621 ggctgcctcg ggcattttgc tgaaaaccgc ccacatcgtg cacttgaata cccaataaat
    16681 gccctagtcc gtgtgggaag aacgtacggc taatcccttg ttcaaaaatt tgctcggctg
    16741 aaagatgaat aaattgatgt tccgctaata attgcgaaat catctgctgc attcgggtgt
    16801 gataatgcag gtagttcacc ccaatactca gctcagcaat aatctgcaac ttcaactgtt
    16861 ccattttcgc caccagctcg gcaaattcag aaccgctgtc aaaggcatag gtgcgggtga
    16921 gatcggaggc ataaccattt accgttgtgc cggcatcaat taaaaaactg tggcgttttg
    16981 cgtgggtgtc aaaatctaac gccgtataat gtagcaccgc accattttga ttaatcgcca
    17041 caatattgcc ataaggaaca ttgagatcag attgctgcgt cgctttcaaa tattcaaggt
    17101 tgatttcaaa ttcgcttttg ccggcaaaaa atgcctcttt tgctacttga tgccctttta
    17161 aggctgaaaa ttgggcttgg taaatacttt caatttcaaa ctccgttttg atggagcggg
    17221 caaaattcag gctattcagc actttctgcg gattaatatg gctaaagcct aactttttgg
    17281 ctagctcaac atcttcaccg ataaaggcac aagcggtcgg attttggata aaggttgcaa
    17341 tttcattctc tgctctcaac aaaacccact caaattccgc agcgaaaaag gcctccgttg
    17401 gcacttttag agtggaaacc caataatctt caggggcata aaaatagatt ttcggcttat
    17461 ttttgccatc taaaaataac cagcaatttt cagcttgggg atatgggaaa aagtaattaa
    17521 aataagggtt aattttaaac ggggcggttt gatcgtctaa aaataaggtt tttgccttgc
    17581 cggcataaat ccataaaccg tctaaaaagg cattttccag caagctttgc actgtctgtt
    17641 gcaaacgtgc gagatgcgta gagaatagat ttttcataag gaataaaatg actcaattaa
    17701 ctgtaaataa agaattagat accttggggc tacgttgccc agagccggtg atgctcaccc
    17761 gtaaaacaat ccgtaatatg gaagagggag aaattttgca tatcatcgcc gatgacccgg
    17821 ccactacccg tgatattccg agtttctgcg aatttatgga tcaccaatta attcaaaaag
    17881 aggtggactc caccccatac cattactgga ttaaaaaagg cttggaataa accacaagcg
    17941 gtcgatttta gccataaaat tgcaaattta tgcacaaaat cgaccgcttg ttttaattaa
    18001 tgacggcgag gttcgtcctc aaaatcgtca ttttcatcat cgaaaaattc accgtcatcg
    18061 ccgtactcat cttcatcagc attcggatct tcaaagtagg ttccccagcc ctcatactcc
    18121 gcaccggctt tttcaattaa tggcagtaac tctttttgtt gtgcggtaat gagatccgca
    18181 ttcaagtgaa tttcgctcac aatgtcgcat acaaaaatca ctttaccatt ttcgtcttcc
    18241 acttcttccg cttcggaaat ttcatagccc agcttatagg catcaactac taatttttcc
    18301 aatttatcaa aatcgtggtg ggcaacgtgg tgttcaataa tataaagggc ttcagggtct
    18361 gaaccatcgg ctaataatga tgaaatggtt tcatcggttt ctgtgcgtaa ttcatcgaga
    18421 ttgtacatat tgaattcctt acttattctg tgattaattt tggtgcaaac cagctatcta
    18481 atttgttcga cagcttatca ataccgattt tattcagtgc ggaataagcc tctacttgga
    18541 tatcaccttg gaatggtaaa atcgcttctc ttaccatttt tacctgctta gagcgtgccg
    18601 attggcttaa cttatccgct ttggtcaaca gcagtaacac cggcaagttg gctgacactg
    18661 cccattcaat catctgttga tctaaatctt tcaacgggtg gcgaatatcc attaaaatca
    18721 ccacaccgcc taaacattca cgcttttgta aatactcgcc taatgctttt tgccactgga
    18781 ttttcatctg ttcaggtact gctgcatagc catagccagg taaatccact aatttacaat
    18841 tcgtttcaac cttaaacaag ttaatcaact gcgttcgccc cggtgttttg gaagttcggg
    18901 ctaaactttt ttggttagtt aaagcgttca aagcagtcga tttaccggca tttgaacgcc
    18961 cggcaaaagc aatctccaca cctgtatctt caggtaaatg acgaatatcc ggtgctgaag
    19021 ttaaaaaatg ggttttatga tagtttaatt tcattttatt ctctaaattt aaaagataag
    19081 ccttgctcgc catattgatt cggttcagga ttaccggcaa atacacccca ttctaaaaag
    19141 agcaacattc caataaatgc cggcatcacc tgtccaagca atatctgcat aattccttgt
    19201 gaataaggag ctgcaagata acaaataatc ggcactaatg ccattaacag ggcttttgcc
    19261 gaacgatttc ggtcgtgtaa tcgtttaata ataatagcag acaggctaaa tcctgtaatt
    19321 ataagcggta gcacactcaa taaagacaat tcagccaaat ttatccacat agcaaccata
    19381 aacaggaaaa gaaagtggat tccaaatcca atccaaaaac ctcgtctatt tagcctaccg
    19441 ttaaaactaa aaagtgcttt ataccaactc attttctacc ctaaagctac atcaagtacc
    19501 atcattacta caaagcctaa catcaggctt aaagtcgcaa tatcagtatt tcccgaactt
    19561 tgcgattccg gaatcagttc ttctacgacc acaaaaatca tcgctccggc agcaaaggca
    19621 agagcataag gtaaaatagc cgtcatcgac agcacaaaaa ccgccccaat caccgccgca
    19681 ataggctcaa ccactgctga catagagcca taccaaaatg ctttcttccg actatgccct
    19741 tcgcctcgaa ttggcaatac aagtgacgag ccttcgggaa tgttttgtaa ccctattccg
    19801 attgccaaac cgatagctcc cataatggaa gcatctacgc ctgaaacttg ggttgccaaa
    19861 gcaccgaaag ccacccctat ggctaatcct tctggaatat tatgaatggt aatcgcaaga
    19921 aaaagcaaag tagattttga taagccttgt ttaagttgat catttccttc agcttgctca
    19981 atcggcttac tcaagtgcaa atgcggcaca acatagtcaa ttaatcgaat aaaagctcca
    20041 ccggcaagaa agccaatcgc tgcaggcagc caagctaaag agccataatc cgcctcggca
    20101 tattctaaag aaggtgcaag caaagaccaa aacgaggctg caatcattac acctgcggca
    20161 aagcccatca tactgtctaa taattttcga ttaaccgatt taaaaaaata gacaaatgac
    20221 gaaccgaaaa tcgtacaacc ccaagtaaat aaacccgcta aaaaagcttg ccatattgga
    20281 gaaagtgaaa ggaaatattc aaacaagaaa tagtaccagc taaaataaat attggctcat
    20341 tctatcaaag attcagggtt attaatatag tgtagccaaa ggctcaacga agatttcact
    20401 tgtaaaactt agcaagaaaa taaccgcttg catttccctt tcataaatac aatgaaaatc
    20461 ctaacaagcg gtcattttcc gtgagttttt tacctttacc acaacaacaa aaaaccgcct
    20521 gtatctctac aggcggctct ttcttggatt acttgtactt tgtttatttg tacttatttt
    20581 gcttttgctt aagttttcgc ttttgtaact tttagctttc gcttaagctc gcttaaatta
    20641 aaacccgacg atgctctact ctcacatggc gaatcaccac actaccatcg acgttactgc
    20701 gttttacttc tgagttcggt atggggtcag gtaggaccac agcactcttg tcgtcgggaa
    20761 aattcttttc tatttttgaa tttctttaag ttaacttcct aatctaactc ttagttcact
    20821 ttaatagtta gattaacttc cttaacttcg attgatttct tctctagttt cgttcttctt
    20881 ctcaatacaa aaacaagcct aaaaacattt gagcgttgta tagttaagcc tctcgggcaa
    20941 ttagtactgg ttagctcaat gtctcacaac acttacacac ccagcctatc tacgtcgtag
    21001 tctccaacaa cccttacaca cttatagtgt gggagaactc atctcgaggc aagtttcgtg
    21061 cttagatgct ttcagcactt atctcttccg catgtagcta cccagcaatg cctctggcga
    21121 gacaactgga acaccagtga tgcgtccact ccggtcctct cgtactagga gcagcccctc
    21181 tcaattctcc aacgcccacg gcagataggg accgaactgt ctcacgacgt tctaaaccca
    21241 gctcgcgtac cactttaaat ggcgaacagc catacccttg ggacctactt cagccccagg
    21301 atgtgatgag ccgacatcga ggtgccaaac accgccgtcg atatgaactc ttgggcggta
    21361 tcagcctgtt atccccggag taccttttat ccgttgagcg atggcccttc cattcagaac
    21421 caccggatca ctatgacctg ctttcgcacc tgctcgactt gtctgtctcg cagttaagct
    21481 tgcttatacc attgcactaa cctcacgatg tccgaccgtg attagcaaac cttcgtgctc
    21541 ctccgttact ctttgggagg agaccgcccc agtcaaacta cccaccagac actgtccgag
    21601 accgcgttcc gcaatcttcg ttagaacatc aaacgttaaa gggtggtatt tcaaggacgc
    21661 ctccacaatc actggcgtga ctgcttcaaa ggctcccacc tatcctacac atcaaaattc
    21721 aatgttcagt gtcaagctat agtaaaggtt cacggggtct ttccgtctag ccgcgggtac
    21781 accgcatctt cacggcgatt tcaatttcac tgagtctcgg gtggagacag cctggccatc
    21841 attatgccat tcgtgcaggt cggaacttac ccgacaagga atttcgctac cttaggaccg
    21901 ttatagttac ggccgccgtt tactggggct tcgatcagga gcttctcttg cgataacacc
    21961 atcaattaac cttccagcac cgggcaggca tcacacccta tacgtccact ttcgtgtttg
    22021 cagagtgctg tgtttttaat aaacagttgc agccagctgg tatcttcgac cggttcaacc
    22081 ttcatccgca agggactaca atctacgccg gcgcaccttc tcccgaagtt acggtgctat
    22141 tttgcctagt tccttcaccc gagttctctc aagcgcctga gtattctcta cctgaccacc
    22201 tgtgtcggtt tatagtacgg tttataataa cctgaagctt agtggctttt cctggaagcg
    22261 tggtatcgat tacttcatct ccgtagagac tcgtcatcac ttctcggtgt taaggaagac
    22321 cggatttgcc taatcttccc acctaccggc ttaaacagac atccaacagt ctgctaacct
    22381 aaccttctcc gtccccacat cgcagttatt acaagtacgg gaatattaac ccgtttccca
    22441 tcgactacgc ttttcagcct cgccttaggg gccgactcac cctgccccga ttaacgttgg
    22501 acaggaaccc ttggtcttcc ggcgaacgag tttttcactc gttttatcgt tacttatgtc
    22561 agcattcgca cttgtgatat ctccagcaga cttctcaatc caccttcatc gacttacaca
    22621 acgctcccct acccaacaga ctttcgtctg atgccgcagc ttcggtgcta tatttgagcc
    22681 ccgttacatc ttccgcgcag gccgactcga ctagtgagct attacgcttt ctttaaatgg
    22741 tggctgcttc taagccaaca tcctagctgt ctaagccttc ccacttcgtt tcccacttaa
    22801 tatagacttt gggaccttag ctggcggtct gggttgtttc cctctccacg atggacgtta
    22861 gcacccaccg tgtgtctcct gagtatcact cttcggtatt cgcagtttgc atcgggttgg
    22921 taatccggga tggaccccta gccgaaacag tgctctaccc ccgaaggtgt ccgctcaagg
    22981 ctctacctaa atagatttcg gggagaacca gctatctccc ggtttgattg gcctttcacc
    23041 cccagccaca agtcatccgc taatttttca acattagtcg gttcggtcct ccagttagtg
    23101 ttacccaacc ttcaacctgc ccatggctag atcaccgggt ttcgggtcta taccttgcaa
    23161 ctacacgccc agttaagact cggtttccct acggctccct tattcagtta accttgctac
    23221 aaaatataag tcgctgaccc attatacaaa aggtacgcag tcacaagatt actcttgctc
    23281 ccactgcttg tacgcacaag gtttcaggtt ctatttcact cccctcgccg gggttctttt
    23341 cacctttcct tcacagtact ggttcactat cggtcaatca ggagtattta gccttggagg
    23401 atggtccccc catcttcaaa caggatatca cgtgtcccgc cctacttgtt gttagcctag
    23461 taccacaatg gagttttaag gtacgggatt atcaccctct acgattgtcc ttcccagaac
    23521 attcccctaa ctttactgct atcactaact ggctctttcg cgttcgctcg ccgctactaa
    23581 cgaaatctcg gttgatttct tttcctcggg gtacttagat gtttcagttc tcccggtttg
    23641 cctcacacag ctatgtattc actgggtgat agtaggttct tcacctactg ggtttcccca
    23701 ttcggacatc ttggattaaa cgcctcttat cgactcatcc aagcttttcg cagattagca
    23761 cgtccttctt cgcctctgat tgccaaggca tccaccttgt gcgcttagtc acttaactat
    23821 acaacctcaa atgttttcta aaacttctca aaaataaaag taaaaaaaca atgaagtcag
    23881 ttttacaact aaacacttga ctgcttttgt tcagtcaaga ttttttctac tcagactttc
    23941 aatttattcg ttatcactta tgtataatta cttatgcgta acgaacttga aatatctctc
    24001 agtttttcag cttgtttcta tattgttaaa gaacagaaga caataaaaat catctttaaa
    24061 tggcgtcccc acggggattc gaaccccggt taccgccgtg aaagggcgat gtcctaggcc
    24121 tctagacgat ggggacaaca tttaaagatg ctttccactt tgccatttag gagtaaaata
    24181 ttctagccaa ttttgcaaaa atcttcaaga ttttcaccgc ttggatggct atctttcact
    24241 catcttctct cattcat
//
LOCUS       DANLVT010000027        23988 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.027, whole genome shotgun sequence.
ACCESSION   DANLVT010000027 DANLVT010000000
VERSION     DANLVT010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 23988)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23988)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23988
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.027"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(25..1564)
                     /locus_tag="PXC99_000916"
     rRNA            complement(25..1564)
                     /locus_tag="PXC99_000916"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            complement(1948..3351)
                     /locus_tag="PXC99_000917"
     CDS             complement(1948..3351)
                     /locus_tag="PXC99_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HDL5417387.1"
                     /translation="MLTYTFNTQEGTALYEQLYRFLKNDIESNILIAGDKLPSKRAFA
                     KHLGISVMTVETAYQQLVAEGYVNTQPKKGFFVNALNLPEKKEAISVQLQKISSEQYE
                     KNKKWQADLTNRQTLAENFPFSVWTKLVREVLKTHQSELMERAESGGVWTLKFAIANH
                     LRAFRGMIVNPTQIIIGAGTEYLYGLLIQLLGLDKHYALTEPSYDKLRRIYHSYRLST
                     ATVSMPFSIDELNSKNVDVIHTSPSHHFPTGHVMPIAKRYELLAWVAQKAERYIVEDD
                     YDSEFRFVGQPIPALKSIDMLGRVIYMNTFSKTLSSTVRIAYMVLPPELLNRFQQELG
                     FYASTVSNFEQYILAEFIQQGYFEKHINRMRAYYQKKRDKLLKAFKQGNLAEKIAIKE
                     EHSGLHFIVQLNTTLTERQILQAAEEQGIKFVALSAYYQDKSQIQQNAFIIGYSNLKD
                     DQINYVAESLKKILDNE"
     gene            3562..4434
                     /gene="pdxS"
                     /locus_tag="PXC99_000918"
     CDS             3562..4434
                     /gene="pdxS"
                     /locus_tag="PXC99_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HDL5417388.1"
                     /translation="MTNRYDLNRQLAQMLKGGVIMDVTTPEQACIAEEAGACAVMALE
                     RIPADIRAAGGVSRMSDPKMIKSIQAAVSIPVMAKVRIGHVTEAQILQAIEIDYIDES
                     EVLSPADDTFHINKRKFEVPFVCGAKNLGEALRRINEGAAMIRSKGEPGTGNVVQAVH
                     HLRKMKQEIARLVSHTTDELYHVAKELQVPFDLVQYVHQYQKLPVVTFAAGGVATPAD
                     AALMMQLGAEGVFVGSGIFKSGDPAKRARAIVQAVTNYNDPKLLAELSEDLGEAMVGI
                     NEQEIELLMAARGV"
     gene            4434..5006
                     /gene="pdxT"
                     /locus_tag="PXC99_000919"
     CDS             4434..5006
                     /gene="pdxT"
                     /locus_tag="PXC99_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase glutaminase
                     subunit PdxT"
                     /protein_id="HDL5417389.1"
                     /translation="MKIAILALQGAFSEHTDKLQQLGVESMEIRQLADLNQDFDGLIL
                     PGGESTVQGKLLRELGLLEPLRQKILNGLPTLGTCAGLILLAENLVNDDKKHLATLPV
                     TVKRNAYGRQLGSFLVEEEVKYLGKIPLTFIRAPYIESTGKDVEILAKISGKIVGVKY
                     QNQIGISFHPEVNNDLSFHRYFVEMCRKNK"
     gene            5155..6105
                     /gene="tal"
                     /locus_tag="PXC99_000920"
     CDS             5155..6105
                     /gene="tal"
                     /locus_tag="PXC99_000920"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HDL5417390.1"
                     /translation="MSQLDTLSKMTVIVADTGDIEAIKLYKPKDATTNPSLILSASAL
                     PQYAPLIEEAINYAKAQSSDKDQQLVDAEDKLAVNIGLEILKLVPGRISTEVDARFSY
                     DTEKTIAKARKLIGLYNDAGISNDRILIKIASTWQGIKAAEQLEKEGINCNLTLLFSQ
                     AQARACAEAGVYLISPFVGRILDWYKAHEGKEYAPAEDPGVISVTNIYNYYKQHGYDT
                     IVMGASFRNVGEIIELAGCDRLTISPPLLKELQESDEKLVCKLDYKGEIKPRPEKMTE
                     AEFYWEHNQEPMAVEKLAEGIRKFAIDQEKLEAMLAEKLQ"
     gene            complement(6167..6440)
                     /locus_tag="PXC99_000921"
                     /pseudo
     CDS             complement(6167..6440)
                     /locus_tag="PXC99_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599987.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
     gene            complement(6471..6935)
                     /locus_tag="PXC99_000922"
     CDS             complement(6471..6935)
                     /locus_tag="PXC99_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HDL5417391.1"
                     /translation="MKKLALAVALMSSFALVGCANTDVFSGSVYSGEQAKEARSIAYG
                     TIVSVRDVKIQARSEGVIGTVGGGVLGGVAGNAIGGGTGQAIATAVGAVAGAVIGNQV
                     EQKASQVSSLEMVIRKDDGKEIVVVQKKEDGFVPGKRVRIVGSNSDLNVSLL"
     gene            complement(6956..7555)
                     /locus_tag="PXC99_000923"
     CDS             complement(6956..7555)
                     /locus_tag="PXC99_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL5417392.1"
                     /translation="MDKIIAENAKFFEKMTACFGDLSQFEQKIRQIAEIAGIDLAAYE
                     IDHLAVRMNQTETAEQWKILLLDGATLLKESEVNGRPIGLFALIQAVEFCGQFVKIVE
                     LPFPKNKVYLEEGWEHIELVFPMLDNESSEQWVSRALSHFRLADNSEIKLKISQPQVE
                     GERLPNPSIAISLRNVTFCNPYCLKLHPYDIKSVIMSEN"
     gene            7589..9316
                     /gene="argS"
                     /locus_tag="PXC99_000924"
     CDS             7589..9316
                     /gene="argS"
                     /locus_tag="PXC99_000924"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HDL5417393.1"
                     /translation="MNIQQILSDKIKQAMVASGADSNVEPLVRQSGKPEFGDYQANGA
                     MGAAKKLGMNPREFAQKILENADLNGIADKLEIAGPGFINIFLNPEWLAENTNSSLQA
                     VNFGIKTANPQTIVIDYSSPNVAKEMHVGHLRSTIIGDAVVRTLAFLGNNVIRANHVG
                     DWGTQFGMLIAYLEKMENEHASEMELSDLEAFYRAAKEHYDSDEAFAEKARNYVVKLQ
                     SGDKYCLTMWKKLVDITMHHNQENYNRLNVTLTEKDVMGESLYNPMLPEIVADLKAKG
                     LAVEDDGALVVFLDEFKNKDGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRAL
                     VFSDSRQAQHMQQAWLITRKAGYVPDSFSLEHPFFGMMLGKDGKPFKTRSGGTVKLKD
                     LLDEAVERADKLIAERSTELTAEEKAAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNML
                     TFEGNTAPYMQYAYTRIRSIFARANIDENALSGSIQLNEPKERALAVKLLQFEEALNG
                     VAKEGMPHILCQYLYELAGSFSSFYEACPILNAEETTKNSRLKLAALTAKTLKQGLDL
                     LGIKTVEKM"
     gene            9506..10672
                     /gene="cgtA"
                     /locus_tag="PXC99_000925"
     CDS             9506..10672
                     /gene="cgtA"
                     /locus_tag="PXC99_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Obg family GTPase CgtA"
                     /protein_id="HDL5417394.1"
                     /translation="MKFIDEALIRVEAGDGGNGCVSFRREKFIPKGGPDGGDGGDGGD
                     VYLIADENLNTLIDYRFEKRYAAGRGENGRSAGCTGHRGQDITLRVPVGTRAIDNDTQ
                     EIIGDLTRHGMKMLVAKGGYHGLGNTRFKSSVNRAPRQKTNGTPGEKRDLKLELLLLA
                     DVGMLGLPNAGKSTFIRSVSAAKPKVADYPFTTLVPSLGVARVGADRSFVVADIPGLI
                     EGAADGAGLGIRFLKHLERCRILIHLVDIMPIDESDPAHNISVIESELYQYSEKLAEK
                     PIWLVFNKIDTIGEEEAAERAKDIAEQIGWEGDYYLISAATGQNVQALTRDIMDFIEA
                     NPREVEEENKAPEEVKFKWEDYHNEAMQNAVEEDWDDDWSEEDDEGIEFIYERH"
     gene            10757..11374
                     /locus_tag="PXC99_000926"
     CDS             10757..11374
                     /locus_tag="PXC99_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate 1-dehydrogenase family
                     protein"
                     /protein_id="HDL5417395.1"
                     /translation="MLSSTSCDLFNIPFFQFAQMKKYCPEEIPRIKAEYKTQWEIWKK
                     LHQEVSRQLGQPFAPPHIEKWCNGWQVRAHFFAYYKYEFNRNSAAILSVILNRRRLQV
                     SLDWHCYRADRSQINVHQYNQWWENLDREKFADFEIWHGSESEYDDFRTVSQMSEQAF
                     TLTNEEDFWCIGKNVEKDDLDNIDVVEFIYQTIRALLPLYEKCHQ"
     gene            complement(11421..13379)
                     /locus_tag="PXC99_000927"
     CDS             complement(11421..13379)
                     /locus_tag="PXC99_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HDL5417396.1"
                     /translation="MIAELGNYTLALALAISILLAVLPLWGAEKQNSTLIALARPMTW
                     AMFLALTVSFGSLFYLFAVNDFTVQYVVNNSNSRLPLQYRLSAVWGAHEGSLLLWVWL
                     LSLWSVGVATFTRKMPEDAVARVLGLMGVIGIGFLMFVIFTSNPFDRTFPNFPIDGKE
                     LNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGRLDTAWARWSRPWTMAAWVF
                     LTLGIVLGSWWAYYELGWGGWWFWDPVENASLMPWLAGTALIHSLAVTEKRGTFKAWT
                     VLLAILAFSLCLVGTFLVRSGILVSVHAFASDPTRGLYILAYLVLVVGGSLLLYAFKG
                     SEIKSLDNYERYSRETMLLINNILLMAFLSVVFLGTLLPLIHKQIGLGTISIGAPFFD
                     QMFLILMVPFSFVLGIGPLVKWRRDQVSAIRKPVIIATILMALLGFGLPYLFRNTITV
                     SVVLGTMMSVFIVLLSLYELHQRATHRHSFLSGIFKLSRSHWGMVLAHLGVAMTVFGI
                     AFSQNFSIERDVRMNVGDKAEILDYQFEFKGIKITDGANYQGGTAELEITRNGKYEAT
                     LNAEKRFYTVSRMGMTEAAIDWGFTRDLYAALGEKLEDNSWAVRLYYKPFIRWIWIGG
                     LFMALGGLLCMLDKRYRLRIENKKEVIA"
     gene            complement(13376..13933)
                     /gene="ccmE"
                     /locus_tag="PXC99_000928"
     CDS             complement(13376..13933)
                     /gene="ccmE"
                     /locus_tag="PXC99_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HDL5417397.1"
                     /translation="MNPRRKSRLKVVVSILLGLSVAAGLTLYALSQNIDLFYTPSEIV
                     NGKNDDPKQKPEVGQRIRVGGMVVEDTVKRDDKSLKVVFDLNDIGPSITVEYEGILPD
                     LFREGQGIVAQGVLIEPTRLKATEVLAKHDENYMPPELGDKLKEQHKKSGVSEQDLKG
                     ESETDRKMKAEAEAEKANNVQGESK"
     gene            complement(14119..14316)
                     /gene="ccmD"
                     /locus_tag="PXC99_000929"
     CDS             complement(14119..14316)
                     /gene="ccmD"
                     /locus_tag="PXC99_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HDL5417398.1"
                     /translation="MTFQFESISDFFAMGGYGFYVWLSYGVSFIAMIGLIWLSRREQK
                     AILAQAKKEIVREEKLKQTSQ"
     gene            complement(14331..15068)
                     /locus_tag="PXC99_000930"
     CDS             complement(14331..15068)
                     /locus_tag="PXC99_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter permease"
                     /protein_id="HDL5417399.1"
                     /translation="MWKWLHPYAKSETQYHLLGKIQPFLGWLSLIMLAAAFVWGLAFA
                     PKDYQQGDSYRIIFIHVPAAIWSMGVYGSMAVAGLVALVWQIRQANLAMISMAPIGLV
                     FAFISLATGAIWGKPMWGTWWVWDARLTSALVLFFLYIGVMALYSAFQDRQTGAKAAA
                     VLSVVGVINLPIIHFSVEWWNTLHQGATITKFDKPSMAVEMLIPLLLAIFGSLIFTAW
                     FSIWRYRIALLKDERNRPWVKQLAKSV"
     gene            complement(15268..15930)
                     /gene="ccmB"
                     /locus_tag="PXC99_000931"
     CDS             complement(15268..15930)
                     /gene="ccmB"
                     /locus_tag="PXC99_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005565617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HDL5417400.1"
                     /translation="MILLTIIQRELTIAFRKPSEILNPLWFFLMVITVFPILMGPNPE
                     LLGKIAGGIAWVAALLSALLSFERLFRDDYLDGSLEQLMLLPLALPQVALAKVIAHWL
                     LTGLPLILLSPIAAILLSLETHVWWALVLTLLLGTPILSCLGAIGVALTVGLRKGGTL
                     LSLLILPLFLPVLIFAAAVLEAATLNMGYSGQLAIIGAILAVTLTFSPFAIAGALRIS
                     LN"
     gene            complement(15927..16568)
                     /gene="ccmA"
                     /locus_tag="PXC99_000932"
     CDS             complement(15927..16568)
                     /gene="ccmA"
                     /locus_tag="PXC99_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis heme-transporting ATPase
                     CcmA"
                     /protein_id="HDL5417401.1"
                     /translation="MNQTAQYQLKLNQIACERGETRLFEGCSFTVQSGEWVQIEGHNG
                     IGKTSLLRILAGLFLPAEGEVLWNDIAIQKQRDHYYSELFYLGHYSGVKPELTPWENL
                     RFYQKIQQLPQDDDALWHALTKVSLIGREDLPCSHLSAGQQRRVALAKLWLTNAKLWI
                     LDEPFTAIDKKGVADLIAHIEQHCEQGRLVIFTSHQAAESDKVRIISLDQFKV"
     gene            complement(16712..17422)
                     /gene="hda"
                     /locus_tag="PXC99_000933"
     CDS             complement(16712..17422)
                     /gene="hda"
                     /locus_tag="PXC99_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA regulatory inactivator Hda"
                     /protein_id="HDL5417402.1"
                     /translation="MQLPLPIHQIDEDTFDNFYSQNSEVLLGSLKRNFTDVQQPFFYI
                     WGGKSCGKSHLLKAVSNHFLLNNQTSSYIPLTKANYFSPLVLDNAELLNVICLDDIQA
                     IAGDAEWELAIFNLFNQIREQQGLFNEGQKTLLLISADCPPHQLNIQLPDLRSRLTWG
                     EVYQLNDLTDEQKCQILQLNAHQKGVELSDEVAHFLLKKAGTDLEQLSKILDKLDKAS
                     LQAQRKLTIPFVKEILSL"
     gene            17692..19293
                     /locus_tag="PXC99_000934"
     CDS             17692..19293
                     /locus_tag="PXC99_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5417403.1"
                     /translation="MKNMTKLSLITLALAASSSVFAAPKTFVYCLEASPSALSPVLST
                     DGASFDVNALPIYNKLTDFEDGTTNVIPSLAEKWDISEDGKTYTFHLRKGVKFHDNKE
                     FKPSRELNADDVVFSINRQFDPNHPFHKVSGGNYEYFIGMDMQNIIDKVEKVDDHTVK
                     ISLKVPNAPFLANLAMDFNAVYSAEYAEQSLKAGKPERIDTNPIGSGPFQFVDYQKDA
                     TVRYKAFENYWQGTAKIDRLVFAITPDASVRLAKLQKGECHAMPYPNPADIEDLKKDP
                     NIELMSQSGMNIGYLALNSSIKPLDNQKVRQALNHAVNKQAIVDAVYQGAGQVAKNPI
                     PPTMWSYNEAVQDYDYNPEKAKALLKEAGFENGFDTELWAMPVSRPYNPNARRMAELI
                     QEDWKKVGVNAKIVSYEWGEYLKRLRQGEAATSMIGWTGDNGDPDNFLNTLLSCSAVE
                     AGSNYAKFCHKPFEEVVLGAAQESDKAKRTELYKQAQVIFKEQAPWITIAHSTVYFPV
                     RKEVKGYVMSPFSLHNFYKVDLADK"
     gene            19565..20569
                     /locus_tag="PXC99_000935"
     CDS             19565..20569
                     /locus_tag="PXC99_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL5417404.1"
                     /translation="MFSFILKRVLMVIPTFIAITLITFALVHFIPGDPIEIRMGERGL
                     SPEVHQQMMEQLGLNRPLFEQYISYIKGVLHGDLGNSFRNNEPVLKEFFTLFPATVEL
                     AFFALLWSLIFGIILGVIAAVKKESWISHTVTTLSLTGYSMPIFWWGLILILYFSTPL
                     GLPASGRLPSEYWIEAETGFMLIDTWNSDEPGAFLAAIKSLILPSIVLGTIPLAVVTR
                     MTRSSMLEVLGEDYIRTAKAKGLNTTRIVIVHALRNALIPVVTVVGLIVGQLLSGAVL
                     TENIFSWPGIGKWIIDAINSRDYPVLQGSVLIIATIIILVNLTVDLLYGIVNPRIRHS
                     "
     gene            20671..21564
                     /locus_tag="PXC99_000936"
     CDS             20671..21564
                     /locus_tag="PXC99_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL5417405.1"
                     /translation="MSGITAVNPPAPKTPLQEFWYYFCQNRGALIGLTFIAIVFVACV
                     FAPWVAPFDPIEQNRSALLLPPAWLEGGNSAHLLGTDDIGRDILSRIIYGSRLSVFIG
                     LVIVLLSCVFGVILGLLAGYYGGTLDIIIMRFVDIMLAIPSLLLTIGVVTILGPSLIN
                     AAIAIAIVSIPSYVRLTRASVLSEKNRDYVTASRVAGASVLRLMFVVILPNCLAPLIV
                     QMTMGISNAILELAALGFLGIGAQPPTPELGTMLAESRGFMQSANWLVTIPGLAILSL
                     VLAFNLMGDGLRDALDPKLKQ"
     gene            21575..22564
                     /gene="dppD"
                     /locus_tag="PXC99_000937"
     CDS             21575..22564
                     /gene="dppD"
                     /locus_tag="PXC99_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HDL5417406.1"
                     /translation="MALLTVDQLSVHFGETKTPFKAVDRISYEVNEGEVLGIVGESGS
                     GKSVSSLAIMGLIDFPGRVMAEKLYFNGNDLLALKPKEKQQIVGADVSMIFQDAMTSL
                     NPSYTVGYQIMEALKVHQGGSKASRRERAIELLTMVGIPDPESRLEVYPHQLSGGMSQ
                     RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIDLLLELQRKENMALILITHDLALVA
                     ESAHRIIVMYAGQVVEEGKAEQIFKAPLHPYTQALLKALPEFAEGKSRLQSLPGVVPG
                     KYDRPQGCLLNPRCPYATEKCRTIEPAMQIINGRQVKCHTPLNAQGEPIRIAV"
     gene            22692..23681
                     /locus_tag="PXC99_000938"
     CDS             22692..23681
                     /locus_tag="PXC99_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5417407.1"
                     /translation="MKENNSLPPFLKAVDLKKYYPVKKGMFAKPKTVKALDGVSFTLE
                     RGKTLAIVGESGCGKSTLGRMLTMIESPTEGELFYNGQNFLVNDKETAQLRRKKIQIV
                     FQNPYSSLNPRKKVGSILEEPLLINTNLSAKERKEKVLEMMAKVGLKPEFYDRYPHMF
                     SGGQRQRIAIARGLMLQPDIVVADEPVSALDVSVRAQVLNLMMDLQEEMGLSYVFISH
                     DLSVVEHIADEVMVMYLGRCVEQGDTKTIFSNPRHPYTQALLSATPRLNPEQRRERIK
                     LTGELPSPLNPPKGCAFNARCRFATDRCYVERPELKTYQDGTRIACFVVEENN"
BASE COUNT         7139 a         5280 c         4954 g         6615 t
ORIGIN      
        1 acttgctgtc gttctcgatt ttggtaagga ggtgatccaa ccgcaggttc ccctacggtt
       61 accttgttac gacttcaccc cagtcatgaa tcataccgtg gtaaacgccc ccctttcggt
      121 taagctatct acttctggta caacccactc ccatggtgtg acgggcggtg tgtacaaggc
      181 ccgggaacgt attcaccgca acattctgat ttgcgattac tagcgattcc gacttcatgg
      241 agtcgagttg cagactccaa tccggactta gacgtacttt ctgagattcg ctccccatcg
      301 ctggctcgcc gccctctgta tacgccattg tagcacgtgt gtagccctac tcgtaagggc
      361 catgatgact tgacgtcatc cccaccttcc tccggtttat caccggcagt ctcctttgag
      421 ttcccgacct aatcgctggc aacaaaggat aagggttgcg ctcgttgcgg gacttaaccc
      481 aacatttcac aacacgagct gacgacagcc atgcagcacc tgtctcatgg ttcccgaagg
      541 cactctcata tctctacaag attccatgga tgtcaagagt aggtaaggtt cttcgcgttg
      601 catcgaatta aaccacatgc tccaccgctt gtgcgggccc ccgtcaattc atttgagttt
      661 taaccttgcg gccgtactcc ccaggcggtc gatttatcac gttagctacg ggcaccagag
      721 ttaaacccca atccccaaat cgacagcgtt tacggcgtgg actaccaggg tatctaatcc
      781 tgtttgctcc ccacgctttc gcacatgagc gtcagtacat tcccaagggg ctgccttcgc
      841 cttcggtatt cctccacatc tctacgcatt tcaccgctac acgtggaatt ctacccctcc
      901 ctaaagtact ctagttgtcc agtctgaaat gcaattccca ggttaagccc ggggctttca
      961 cacctcactt aaacaaccgc ctgcgtgccc tttacgccca gttattccga ttaacgctcg
     1021 caccccccgt attaccgcgg ctgctggcac ggagttagcc ggtgcttctt ctgtgattaa
     1081 cgtcaatcga ctgttctatt aaaacaatcg ccttcctcgt caccgaaaga actttacaac
     1141 ccgaaggcct tcttcattca cgcggcatgg ctgcatcagg gttcccccca ttgtgcaata
     1201 ttccccactg ctgcctcccg taggagtctg gaccgtgtct cagttccagt gtggctggtc
     1261 atcctctcag accagctaga gatcgcgggc ttggtgagcc tttacctcac caactaccta
     1321 atcccacttg ggctcatctt atggcaggtg gccaaatggt cccacccttt agtcctaaga
     1381 cattacgcgg tattagctac cgtttccagt agttatcccc ctccataagc cagattccca
     1441 agcattactc acccgtccgc cactcgtcac ccaaggagca aactcctatg tgctaccgtt
     1501 cgacttgcat gtgttaagcc tgccgccagc gttcaatctg agccatgatc aaactcttca
     1561 attcaaaaag tttaatcgct caatactgct gacataaaat cgcacttcca aatttaaacc
     1621 taattaaaat taagttaaaa gaaagtaatg aatttctagt tagcacctat taagacttca
     1681 aaattaaaaa aatgtttttc aatcaagtca atcaacaagc gcccacacag attgtctgat
     1741 aaattgttaa agaacaaaaa gaaacgacgc actggaaatc aattttaaat cgttcacaac
     1801 agtgcgtcgt tgtgtgccat gcattatacg caaaacaaaa tgccttgcaa ggagaatttg
     1861 gtaatttttt gcaaaaatca ctaaaataat taccacttgc gtgtttttaa ggcaatttgc
     1921 taaaaattaa agcagttttg atacttgcta ttcgttgtct aaaatttttt tcaggctctc
     1981 tgctacataa ttaatctgat catcttttaa attagagtac ccaattataa aagcattttg
     2041 ctgaatttga gatttatctt gataataagc agacaatgcg acaaatttta taccttgttc
     2101 ttctgctgcc tgcaaaattt gcctttctgt taatgttgtg tttagctgta caatgaaatg
     2161 caagcctgaa tgttcttctt ttattgcaat cttttctgct aaattgcctt gcttgaaagc
     2221 ttttagtaat ttatccctct ttttttgata atacgctcgc attcgattga tatgcttttc
     2281 aaaatagcct tgttgaataa attctgccaa aatatattgc tcaaaattgg aaacggtaga
     2341 agcataaaac cctaattcct gctgaaaacg attcagtaat tctggtggca aaaccatata
     2401 ggcaattcgt acagttgaag agagcgtttt agaaaaagta ttcatataga taactcgccc
     2461 gagcatatca atagatttca atgcaggaat tggttgtcct acaaaacgaa attcgctgtc
     2521 gtagtcgtct tctacaatat atctttcagc tttttgtgca acccaagcta acaactcata
     2581 acgtttggca atcggcatta cgtgtcctgt cggaaaatgg tgtgatggcg aggtatgtat
     2641 cacgtccaca ttctttgaat ttaactcatc gattgaaaat ggcatcgata ctgtggctgt
     2701 tgataagcga taactgtgat aaattctgcg caatttatcg taactgggct cagttagtgc
     2761 ataatgttta tctaagccta gaagctgaat gagcaaaccg taaagatact ccgtacccgc
     2821 tccaataata atctgtgttg gattaacgat cattcctcta aaggctcgaa gatgattggc
     2881 tatcgcaaat tttaatgtcc atacgccccc actctcagca cgctccatta gctcactttg
     2941 gtgtgttttc agcacttcgc gtactaattt tgtccaaacc gaaaacggaa aattttctgc
     3001 taaagtctgt cgattagtta aatctgcctg ccatttttta tttttctcat actgttctga
     3061 actgattttt tgtagctgaa ctgatatggc ttcctttttt tctggtaaat ttaaagcatt
     3121 cacaaaaaag ccttttttag gctgagtatt cacataacct tctgctacta actgttggta
     3181 agctgtttcc actgtcatta ctgaaatgcc taaatgcttt gcaaaagccc gtttagacgg
     3241 cagtttatcc cctgctataa gtatgttgct ttcaatgtcg ttttttagaa aacggtaaag
     3301 ttgctcatag agagcggtgc cttcttgtgt gttaaaagtg taggtaagca taatctgaca
     3361 tgataagaaa aacataaaat ggtcatttta aacagttcag attaaattac aatacatgct
     3421 gtttcctcac tcaaattggc tgagtgtatt taaattggta gatgaacact cgcatccagc
     3481 gaatataaaa ataaacttaa tgccgagcta atcgaaacta cgaaaagttc aattattcaa
     3541 caattagaag gaaaaagtac aatgactaat cgctatgatt taaacagaca acttgctcaa
     3601 atgttaaaag gcggtgtaat tatggatgta actacccctg agcaagcctg cattgcggaa
     3661 gaagctggag cttgtgcagt aatggcacta gagagaattc ctgcagatat tcgtgcagct
     3721 ggtggcgttt ctcgtatgag tgatcccaag atgataaaga gtatccaagc agcggtatcc
     3781 attcctgtaa tggcgaaagt acgtattgga cacgttacag aagcacaaat cctgcaagcg
     3841 atcgaaattg actatattga cgaaagtgag gtgctttctc ctgcagatga taccttccac
     3901 attaacaagc gtaaatttga agtgccattt gtatgtggag caaaaaattt aggcgaagcc
     3961 ctacgtcgta ttaatgaagg cgctgctatg atccgtagta agggcgagcc aggaacaggc
     4021 aatgtggtgc aagcagtaca tcatcttcgc aaaatgaaac aagaaattgc ccgcttggtt
     4081 tcacatacca cagatgaact ttatcacgta gctaaagagc tccaagtacc atttgattta
     4141 gtacaatatg tacatcagta ccaaaaattg cctgttgtca cctttgctgc tggaggtgtt
     4201 gcaacccctg ccgatgctgc attgatgatg cagttaggtg cagaaggagt cttcgttggc
     4261 tcaggtattt tcaagtcagg cgatcctgct aaacgagcgc gggccattgt acaagctgtt
     4321 accaactaca acgatcctaa attacttgcg gagctttctg aagatttagg tgaagcaatg
     4381 gtaggaatta atgagcaaga gattgaattg ctaatggcag caagaggtgt ctaatgaaaa
     4441 ttgctattct tgctctgcaa ggtgcattta gcgagcatac tgataaactc cagcaactag
     4501 gggttgaaag tatggaaatt cgtcaacttg ctgatttaaa ccaagatttt gatggtctga
     4561 ttttacctgg tggcgaatcg actgttcaag gtaaattatt acgtgaatta ggcttgcttg
     4621 agccgcttcg tcaaaaaatt ttaaatggct tgccaacgct tggaacttgt gcgggtttaa
     4681 ttttgcttgc ggaaaatttg gtaaacgacg ataaaaaaca tttggctact ttgcctgtaa
     4741 cagtgaaacg taatgcttac ggaaggcaat taggctcgtt tttagtagaa gaagaagtta
     4801 aatatctcgg taaaattcct ctcacattca ttcgtgcgcc ttatatagaa agcactggaa
     4861 aagatgtaga aattttagcc aagataagcg gtaagattgt tggagtaaaa taccaaaatc
     4921 agataggtat atccttccat cccgaagtga ataatgattt aagttttcac cgctattttg
     4981 tggaaatgtg ccgaaaaaat aagtaaaaga aaaggggcta ttgcctctta ttttttatac
     5041 ttttttagaa aaagtagttt tgaataaaaa aatactaaaa ctctatttcc cttatgttat
     5101 tattatagta acttttacta ctatttattt cacaatcaaa aaaggaatca gactatgagc
     5161 caacttgaca ccttaagcaa aatgaccgtt atcgttgctg acactggtga tattgaagca
     5221 atcaaacttt ataagccaaa agatgcaaca acaaacccgt ctttaatttt aagtgcatcg
     5281 gcattaccgc aatatgctcc attaattgaa gaagcgatta attacgcaaa agcacaaagt
     5341 agcgataaag atcaacagtt agttgatgct gaagataaat tagcggtaaa tattggttta
     5401 gaaatcttaa aacttgtacc tggacgtatt tctacagaag ttgatgctcg tttttcttat
     5461 gatactgaaa aaactatcgc taaagcacgt aaattaattg gattatataa cgatgcaggc
     5521 atcagtaatg atcgcatttt aattaaaatt gcctctactt ggcaaggtat aaaggcagca
     5581 gaacagttag aaaaagaagg cattaactgt aacttaacgt tattattctc tcaagctcaa
     5641 gctcgtgcgt gtgcagaagc aggggtttac ttaatctctc cattcgttgg tcgtatttta
     5701 gactggtaca aagctcacga aggtaaagaa tatgctccag ctgaagatcc aggtgtaatt
     5761 tcagtaacca atatatacaa ttactacaaa caacacggtt atgacactat tgtaatgggt
     5821 gcaagtttcc gtaatgtagg agagatcatt gagttagctg gttgcgaccg tttaaccatc
     5881 tcaccaccgt tattaaaaga gctacaagag agcgatgaaa aattagtttg caagctagat
     5941 tacaaaggtg aaatcaagcc tcgtccagaa aaaatgacag aagcagaatt ctactgggag
     6001 cataaccaag agccaatggc agtagaaaaa ttagctgaag gcattcgtaa atttgcgatt
     6061 gaccaagaga agttagaagc aatgcttgct gaaaaacttc aatagacaac gcataaaaaa
     6121 accggcatta acgataatta atgccggttt taatttctat aaatgattat ttaaactcat
     6181 aacgtctaat cgtttttaga tcgctatctt catttttaat ttcatcggca agatgaacac
     6241 gagcaccaac cgctgcatgt gcatcatact cacgagttag agtcacagtt tcaccattat
     6301 ctcgttgaac tgtaagttca acaacatcgt ttgatactgc tttgctagat aaatgttgca
     6361 ttacctttat cagaataaac atctgcagta caagctgcta acataagtga agctaataca
     6421 gctaaagaaa gttttttcat taataatata tcctctagga aaaactaaaa ttaaagcaga
     6481 gaaacattca ggtctgaatt agaccctacg attctcacac gtttgccagg cacaaaaccg
     6541 tcttctttct tttgaacgac cacgatttct ttaccatcat ctttgcgaat aaccatttcc
     6601 aatgaagaaa cttgactcgc tttttgttct acttgattac caattaccgc accggcaact
     6661 gcccccactg cggttgcaat cgcttgccct gtaccaccgc caatcgcatt accggcaacg
     6721 ccacctaata caccaccgcc gacagtaccg atcacacctt cactgcgtgc ttgaattttc
     6781 acatcacgca ctgaaacaat agtgccataa gcgatagaac gagcttcttt tgcctgctca
     6841 ccggaataaa cgcttccgct aaacacgtct gtatttgcac agccaactaa agcaaaactt
     6901 gacattaatg cgacagctaa agctaatttt ttcattttgt ttgttctccg aaacgttaat
     6961 tttctgacat aattacactt tttatatcat aagggtggag ctttagacaa taaggattac
     7021 aaaaagttac atttctcaag ctgatcgcaa tgcttggatt tggcaatctc tccccttcta
     7081 cctgaggttg gctgattttt aatttaatct cagaattatc agcaagtcta aagtgcgaca
     7141 atgcccttga cacccattgt tccgaacttt cgttgtctaa catcggaaaa accagctcaa
     7201 tatgttccca gccttcttct aaataaacct tatttttcgg aaaaggcaac tcgacaatct
     7261 ttacaaattg tccgcaaaat tcaaccgctt gtattaatgc aaacagccct atcggtctgc
     7321 cgtttacctc gctctcttta agtaaggttg ccccatcaag caaaaggatc ttccactgtt
     7381 ctgcggtttc ggtttggttc attcttaccg caagatgatc gatttcatac gctgctaaat
     7441 caatgccggc gatttcagca atttgtcgga ttttctgttc aaattgcgat aaatcgccaa
     7501 aacaagcggt cattttctcg aaaaattttg cattttctgc tataattttg tccatttttt
     7561 tgtaaataga atttaaatag gttaaacagt gaatattcaa caaattttat cagataaaat
     7621 taaacaggca atggtagcaa gcggtgcaga cagcaatgtc gagcctttag tccgccaatc
     7681 gggcaagccg gaatttggcg attaccaagc caatggtgcg atgggtgcag cgaaaaaatt
     7741 ggggatgaat ccgcgtgaat ttgcccaaaa aatcttagag aatgccgatt tgaacggtat
     7801 tgccgataaa ttagaaattg ccggtccggg ctttatcaac attttcttaa acccagaatg
     7861 gctggcggag aacactaaca gttcattgca agcggtcaat tttggcataa aaactgcaaa
     7921 tccgcagacg attgtgatcg actactcctc gccaaacgta gcaaaagaaa tgcacgtcgg
     7981 gcatttgcgt tccaccatta ttggcgatgc ggtagttcgt acccttgcgt ttttaggcaa
     8041 taatgtgatt cgtgccaacc acgttggcga ctggggtact caattcggta tgctgatcgc
     8101 ttaccttgaa aaaatggaaa atgagcacgc cagcgaaatg gagctaagcg atttagaagc
     8161 cttctatcgt gcggcaaaag agcattatga ttcagacgaa gcattcgccg aaaaagcccg
     8221 taactatgtg gtgaaattac aaagcggcga taaatattgc ttaacaatgt ggaaaaaatt
     8281 ggtcgatatt acaatgcacc acaatcaaga gaactacaat cgcttaaatg ttacgctcac
     8341 cgaaaaagat gtaatgggcg aaagcctcta caatccaatg ttgcctgaaa ttgtggcgga
     8401 tttaaaagcc aaaggcttag cggtggaaga tgacggtgct ttagtggttt tcctcgatga
     8461 atttaaaaat aaagatggcg acccaatggg cgtaatcgtg cagaaaaaag atggcggttt
     8521 cttatatacc actaccgata ttgcggcagc aaaatatcgc tacgagacct taaaagctga
     8581 ccgagcctta gtcttttctg acagccgcca agctcaacat atgcaacagg catggctcat
     8641 tacccgcaaa gcgggctatg tgccggacag tttcagcctt gaacacccgt tcttcggaat
     8701 gatgctaggc aaagacggca aaccgttcaa aacccgtagc ggtggcacag tcaaactcaa
     8761 agatttatta gatgaagcgg tagagcgtgc cgataaactg attgccgaac gttcaaccga
     8821 gctaactgcg gaagaaaaag ccgccgtggt tgaagcggtt gcgattggtt cggtgaaata
     8881 ttctgactta tcgaaaaacc gcaccaccga ttatgtgttc gattgggaca atatgctgac
     8941 ctttgaaggc aataccgccc cgtatatgca gtatgcctac acccgcattc gctccatctt
     9001 tgcccgtgcg aacattgacg aaaatgcatt gagcggttca atccaactca atgagccaaa
     9061 agagcgtgca ttagcagtga aactattgca atttgaagag gcattaaacg gcgtggcaaa
     9121 agaaggtatg ccacatattt tatgccaata tttatacgag cttgcaggta gtttctccag
     9181 tttctacgag gcttgcccga ttctcaatgc cgaagaaaca actaaaaaca gccgtttgaa
     9241 actcgctgcc ttaacggcga aaaccttgaa acaagggttg gatttactcg gtattaaaac
     9301 tgtagagaag atgtaataca aactctctcc ccttgtggga gagagaccgc ttatgagcgt
     9361 tcagcgaaat aagcagagag aggggacaag cggtaatttt tattaaaatt tttacacatt
     9421 ttcccctctc cctgattttt cttctgaacg aagaaaaatc tgtccctctc ccacaagggg
     9481 agagggcata taaaaggaaa caaatatgaa atttattgac gaagccctga ttcgtgtaga
     9541 agcaggcgat ggcggtaatg gctgtgtgag cttccgccgt gaaaaattta tcccgaaagg
     9601 cggacctgac ggtggtgatg gtggcgatgg tggtgatgtg tatttaattg ccgatgaaaa
     9661 cctaaacacc cttatcgact accgctttga aaaacgttat gccgctgggc gtggcgagaa
     9721 tggtcgcagt gccggctgta ccggacatcg tgggcaagat attaccctac gagtgccggt
     9781 tggaacccgt gcgattgata acgacaccca agaaattatt ggcgatttaa cccgccacgg
     9841 aatgaaaatg ctggtggcaa aaggtggtta tcacggttta ggtaataccc gctttaaatc
     9901 ctcagtaaac cgagctccac gccaaaaaac caacggtacg cctggcgaaa aacgtgattt
     9961 gaaattagag ctgttactgc ttgccgatgt gggaatgctt ggcttaccaa acgccggtaa
    10021 atccaccttt atccgcagtg tctctgctgc caaaccaaaa gtggcggatt acccgttcac
    10081 gacgctggtg ccaagtttag gggtagcccg tgtgggggcc gaccgcagtt ttgtggttgc
    10141 cgatattccg gggttaattg aaggtgcagc agatggtgca gggctgggga ttcgtttcct
    10201 aaaacacttg gaacgttgcc gtattttgat tcacttagtc gatattatgc cgattgatga
    10261 aagcgatccg gctcataata tttcggtgat tgaatccgag ctttaccaat acagcgaaaa
    10321 actcgccgaa aaaccgatct ggttggtgtt taataaaatt gacaccatcg gcgaagaaga
    10381 agctgctgag cgagcaaaag acattgccga gcaaatcggc tgggaaggcg attactactt
    10441 gatttctgcc gctaccggtc aaaacgtgca agctctcact cgtgatatta tggactttat
    10501 tgaagccaac ccacgcgaag tggaggaaga aaataaagca cctgaagaag tcaaattcaa
    10561 atgggaagac taccacaacg aagcaatgca aaatgcggta gaagaagatt gggacgacga
    10621 ttggagcgaa gaagatgacg aaggcataga gtttatttac gaacgccatt agtgcaataa
    10681 tacaagcggt tgtttttaaa cggagatttg caaatttccg gagaaaaaca accgcttgta
    10741 ggtttaagga gagtttatgc ttagctcaac atcgtgcgat ttattcaata ttccgttctt
    10801 ccaatttgct cagatgaaga aatattgccc tgaggagatc cctcgaatta aggcggaata
    10861 taaaactcaa tgggaaattt ggaaaaagct acatcaggaa gtttctcgtc agcttgggca
    10921 gccgtttgct ccaccacata ttgagaagtg gtgcaacggt tggcaagttc gagcccattt
    10981 ttttgcctat tacaagtatg aatttaatcg aaattctgcg gctattcttt ccgtgatttt
    11041 aaatcgtcgc cgtttgcaag tgagccttga ttggcattgt tatcgagccg atcgctcgca
    11101 aattaacgtg catcaataca atcaatggtg ggaaaattta gatcgggaaa agtttgctga
    11161 ttttgagatt tggcacggaa gtgagagtga atatgatgat tttagaaccg ttagtcagat
    11221 gtcagagcaa gcgttcaccc taactaacga ggaagatttt tggtgtatcg gcaaaaatgt
    11281 ggaaaaggac gatttggata acattgatgt agtagaattt atctaccaaa ccattcgggc
    11341 attattgcca ctttatgaga aatgtcatca ataaacacta aaaagagagg cgaacatcat
    11401 ttgttcgccc ctttcaaaat ttaagctatc acttcttttt tattttcaat gcgtaaacgg
    11461 tagcgtttat ccaacataca gagtaaacca ccgagagcca taaacagccc gccaatccaa
    11521 atccagcgaa tgaacggttt ataatacaaa cgcactgccc aagagttatc ttctaatttt
    11581 tcgccaagtg cagcgtataa atctcgggta aagccccagt caatcgccgc ttcggtcatt
    11641 cccattcggc tcaccgtata gaaacgtttt tcagcattaa gtgtggcttc atatttaccg
    11701 tttcgagtaa tttcaagctc ggcagtgccg ccttgatagt ttgccccatc ggtgatttta
    11761 atacctttaa attcaaattg gtaatctaaa atctcagctt tatcacccac attcattctg
    11821 acatctcgtt caatgctgaa attttggcta aatgcaatgc cgaacactgt catcgcaacc
    11881 cctaagtgag ccagcaccat tccccaatgt gaacgggaca gtttgaaaat gccacttaag
    11941 aacgagtggc gatgggttgc acgttggtgt agctcataca ggctaagtaa cacaataaag
    12001 acagacatca tcgtgcctaa caccacactc acggtaatgg tgttacggaa taagtatggc
    12061 aatccgaatc caagcaatgc cattaaaata gttgcaataa ttaccggttt acgaatagca
    12121 gaaacttggt ctctacgcca tttcactaat ggtccaatcc ctaatacaaa tgagaaagga
    12181 accattaaaa ttaagaacat ttggtcaaaa aatggtgccc cgattgaaat cgtccctaag
    12241 ccgatttgtt tgtgaattaa tggcagtaag gtccctaaaa acaccaccga taaaaatgcc
    12301 attaataaaa tattattaat gagtagcatc gtttctcttg aatagcgttc atagttatct
    12361 aagcttttaa tttccgagcc tttgaatgca tacagcagta aagaaccacc tactactaac
    12421 accaagtaag ccaagatgta taaaccacga gttggatctg aagcaaaggc gtgaactgac
    12481 accaaaatgc ctgaacgcac taagaaagtc cccactaaac agagcgagaa agcaagaatc
    12541 gctaataaga ccgtccacgc tttaaatgtg cctcgttttt cagtcactgc taatgaatga
    12601 atcagtgctg ttcctgcgag ccacggcatt aatgaggcat tctcgacagg atcccagaac
    12661 caccagccac cccaaccaag ttcgtagtat gcccaccaag aaccaagcac gataccgagc
    12721 gttaaaaata cccacgctgc cattgtccac ggacgagacc atcttgccca cgcagtatct
    12781 aaacgccctg tcatcagtga ggcaatcgca aaagcaaagg caacggagaa acccacatag
    12841 cccatataaa gcaacggtgg gtggaagatc aagcccacat cttgcagcat tgggtttaat
    12901 tctttgccat caatcggaaa atttgggaaa gttctatcaa acgggttgga ggtaaaaatc
    12961 acaaacatca aaaagccgat gccaatgacc cccattagtc ctaacactcg agcaacggca
    13021 tcttccggca ttttacgggt aaaggttgct accccgacag accaaagcga caacaaccaa
    13081 acccaaagca ataatgagcc ttcgtgagcg ccccacaccg cagataaacg atattgcaac
    13141 ggtaaacggc tattggagtt gttcaccaca tattgcacgg taaaatcatt caccgcaaac
    13201 agataaaaca gcgaaccaaa agagacagtc aatgccaaaa acattgccca agtcatcggg
    13261 cgggcaagag caattaaggt gctattttgc ttttctgctc cccaaagcgg taaaactgcc
    13321 aacaagatag aaatcgctag ggctaatgcc aacgtataat tgcctaattc tgcaatcatt
    13381 tgctttcccc ttgcacattg ttggcttttt ctgcttccgc ctcggctttc attttgcggt
    13441 cggtttccga ttcacctttc agatcttgtt cagacacacc tgatttttta tgctgttctt
    13501 ttaatttatc gcctaattcc ggtggcatat agttttcatc gtgttttgcc agaacttccg
    13561 tagcttttaa acgggttggt tcaatcaaca cgccttgtgc cacaatgcct tgcccttcac
    13621 ggaataaatc cggcaaaatt ccttcgtatt ccacggtaat cgaaggcccg atatcattga
    13681 gatcaaatac tacttttaaa cttttatcat cacgctttac cgtatcttcc actaccattc
    13741 cgcccacacg gatacgctga ccaacttcag gcttttgttt cggatcatca tttttaccgt
    13801 ttacaatttc agacggcgtg taaaacagat cgatattttg gcttaacgca taaagtgtca
    13861 agcctgctgc gacagaaagc ccaagtaata tcgaaaccac cacttttaat cttgatttgc
    13921 gtcttggatt catcgtaatc acccttcaaa ataaatgcaa aattgcataa aaactcaaaa
    13981 ataaattagt gtaagaatag caaaaaaccg caaaacattc ccgatatttc aaggaagttt
    14041 tgcgatttct caaatcaaat acctataaag aagtatgagg ctatcgttgc aaaaaataaa
    14101 gttatttcga ccgcttgttt attgtgatgt ttgctttaat ttttcttcac gcacaatctc
    14161 tttttttgct tgagccaaaa tcgctttctg ttcacggcga ctaagccaaa tcagcccaat
    14221 cattgcaatg aaactgacac cataagagag ccatacataa aagccgtagc cacccattgc
    14281 aaaaaaatcg ctgattgatt caaattgaaa tgtcattgtt ctctcctact ctaaactgat
    14341 tttgccagtt gttttaccca agggcgatta cgttcgtcct ttaataaggc aatgcgataa
    14401 cgccaaatgc taaaccaagc ggtaaaaatt aagctaccga aaatcgccaa tagcaacgga
    14461 attaacattt ccaccgccat agacggttta tcgaatttag tgatggtcgc cccttgatgc
    14521 aaggtgttcc accattccac cgaaaagtga ataatcggca agttaatcac gccaacaact
    14581 gacagcacag ccgccgcttt ggctccggtt tgtctgtctt ggaatgcgga ataaagagcc
    14641 atcacgccga tataaaggaa aaataacact aaagcggagg ttaaacgagc gtcccacacc
    14701 caccaagtcc cccacattgg tttgccccaa attgcaccgg ttgcaagtga aataaaagcg
    14761 aatactaagc cgataggtgc cattgaaatc atcgccaagt tagcttggcg aatttgccaa
    14821 accaatgcca ccaagcctgc caccgccatt gagccatata cgcccatcga ccaaattgct
    14881 gccggcacgt gaataaagat aatgcgatag ctatcgccct gttggtaatc tttcggggca
    14941 aaagccaagc cccaaacaaa agcagccgct aacataatca aacttagcca acctaaaaac
    15001 ggttggattt tccctagcaa atggtactgc gtttccgatt ttgcataagg gtgtagccat
    15061 ttccacatat atttctccaa agtaaataat tcccctcacc cgtttacagg agagggacga
    15121 tttgagcttc gttcagaagc gaaaatcagg gagaggggaa aaagttgcaa attttcataa
    15181 taattcgacc gcttcccctc tctctgaaaa acacctctga acgaggtgtt tttcggtctc
    15241 tctccctcaa gagggagaga ggaagtttta gttcaaacta attcttaatg caccggcaat
    15301 cgcaaacggc gaaaaagtta aagtaaccgc taaaattgct ccgataatcg ccagttgtcc
    15361 gctataaccc atatttaagg tggcggcttc taataccgca gcggcaaaaa tcagtaccgg
    15421 taagaataac gggaggatta ataaactcag caacgtaccg cccttgcgta agcccacagt
    15481 gagtgccacg ccaatcgctc ctaagcagct taaaatcggg gtgccgagta ataatgtcag
    15541 cactaacgcc caccaaacgt gggtttcaag tgaaagcaaa atggcagcaa tcggtgaaag
    15601 taaaatcaac ggtaagccgg tcagcagcca gtgagcaatc actttcgcta acgcaacctg
    15661 cggcaaggca agcggcagta acattaattg ctcgagcgaa ccgtctaaat aatcatcacg
    15721 gaataaccgc tcaaaggaaa gcaatgcaga aagcaaagca gctacccacg caatgccgcc
    15781 ggcaattttg cctaataatt cggggttagg tcccattaaa atcgggaata cggtaatcac
    15841 cattaaaaaa aaccacaacg gatttaaaat ctccgagggt ttacgaaagg caatggtgag
    15901 ttcccgctga ataatagtca ataaaatcat actttaaatt gatctaacga aataatacgc
    15961 actttgtcgc tttcagcagc ctggtggctg gtaaaaatca ctaatctgcc ttgctcgcaa
    16021 tgctgttcaa tatgagcaat cagatccgcc acaccctttt tatcaatagc ggtaaagggt
    16081 tcatctaaaa tccaaagttt ggcgttagtg agccacaatt ttgccaacgc cacacggcgt
    16141 tgctgaccgg ctgacaaatg cgaacaaggc aaatcttcac gcccgatgag cgacactttc
    16201 gtcaatgcgt gccaaagggc atcatcatct tgcggtaact gttggatttt ctggtagaaa
    16261 cgcaaatttt cccacggtgt taattccggt tttacccccg aataatgccc taaataaaat
    16321 agttcagaat aatagtgatc acgctgtttt tgaattgcaa tatcgttcca cagcacctca
    16381 ccttccgcag gtaaaaaaag cccggctaaa atacgtaaca ggctggtttt tccaatgccg
    16441 ttatgccctt caatctgcac ccattcacca ctttgcacgg taaaactgca cccttcaaac
    16501 aaacgggttt cgccccgttc gcaggcaatc tgattaagtt taagctgata ttgggccgtt
    16561 tggttcatta tttttcatct ggttgaacat tttagccgaa gtgtatcata agcctttgat
    16621 ttaacgtagc aaataaatta cttctttaga ggtagcaagc ggtcaaattt tcaaaaagtt
    16681 ttgcaaattt tgataagaat caaaccgctt gttacagaga gaggatttcc ttcacaaaag
    16741 gaatggttaa tttacgctgg gcttggagag acgctttatc caacttatcc aatattttag
    16801 agagttgctc taaatccgtt cccgcttttt ttaacagaaa atgagcgacc tcatcggaca
    16861 attccacccc tttttggtga gcatttaact gtaaaatttg gcatttttgt tcatcggtta
    16921 aatcgtttag ctggtacact tcgccccaag ttaagcggga acgtaaatcc ggcaattgga
    16981 tattgagttg gtgtggtggg caatcggcac tgattaacag caaggttttt tgcccttcgt
    17041 taaacaagcc ttgttgttct cgaatttggt taaacaggtt aaaaatagca agttcccatt
    17101 cagcatctcc tgcaatcgct tgaatatcat ctaggcaaat cacattcagc agttcggcat
    17161 tatctaacac caacggcgag aaataattgg ctttagtgag cggaatataa ctagaagttt
    17221 ggttatttaa aagaaagtgg ttacttactg ctttcaacaa atgactttta ccgcagctct
    17281 taccgcccca aatgtaaaaa aacggctgtt gaacatccgt aaaatttcgt ttgagggatc
    17341 caagcaacac ttcgctgttt tggctataaa aattgtcgaa agtgtcttca tcaatttgat
    17401 gaatgggtag aggtaactgc aaggctttcc ttaaatctct aagtttgata tttttctaag
    17461 aatagcggaa aagcaggggt ttgagaagta aaaatagtga gaaaatatcc actcattttt
    17521 ctaatgaaga gatgacaagc ggttgaattt ccacataatt ttgtcaatct gaccgaaaac
    17581 ccaccgtttt gtgttaaaaa aagattgcag ttagctcaaa aaattgtata ttcaaagctt
    17641 tctacttaaa aagtagagta aaacaactat tacaaacaca acggagtgaa tatgaaaaac
    17701 atgactaaat tatcgctaat aacattagcg ctagccgctt caagtagcgt ctttgctgca
    17761 ccgaaaacct ttgtttactg cttagaggct tcgccttcag cattaagccc agtgctatca
    17821 acagacggtg caagctttga tgtgaacgcc ctcccgattt ataacaaatt aaccgacttt
    17881 gaagacggta caactaatgt tattccctct cttgccgaaa aatgggacat ttcggaagac
    17941 ggcaaaactt acaccttcca cctgcgtaaa ggcgtaaaat tccacgacaa taaagaattt
    18001 aaaccaagcc gtgagttaaa tgcagacgat gtagtgttct ccattaaccg tcagtttgat
    18061 ccaaaccatc cattccacaa agtttccggc ggtaactacg aatactttat cggtatggat
    18121 atgcaaaata ttatcgataa agtggaaaaa gtggacgatc acaccgttaa aatcagctta
    18181 aaagtgccaa atgcgccgtt cttagctaac ttagcgatgg atttcaacgc cgtttactca
    18241 gcggaatatg cagagcaatc cttaaaggcc ggcaagcctg agcgtattga taccaaccca
    18301 atcggcagcg gcccgttcca gtttgtggat taccaaaaag atgccaccgt tcgttacaaa
    18361 gcctttgaaa actactggca aggcacagcg aaaattgacc gcttagtgtt tgcaattact
    18421 ccggatgcat cggtacgttt agccaagtta caaaaaggcg agtgccacgc aatgccttac
    18481 cctaacccgg ctgatatcga agatctgaaa aaagatccaa atattgaatt aatgagccaa
    18541 tctggaatga atatcggcta tttggcatta aattcatcga ttaaaccatt agataaccaa
    18601 aaggtacgtc aagcattaaa tcacgctgta aacaaacaag cgattgtaga tgcggtatat
    18661 cagggagccg gtcaagtagc gaaaaaccca attccaccaa caatgtggag ctataatgaa
    18721 gcggttcaag actatgacta caaccctgaa aaagccaaag cattgttaaa agaagccggt
    18781 tttgaaaatg gttttgatac tgaactttgg gcaatgccgg tatcacgtcc atataacccg
    18841 aatgctcgcc gtatggctga acttatccaa gaagactgga aaaaagtggg cgtgaatgcg
    18901 aaaatcgtca gctatgaatg gggcgaatat ctcaaacgct tacgccaagg tgaagcggca
    18961 acctcaatga ttggctggac aggcgataac ggtgacccag ataacttcct caacacctta
    19021 ttaagctgct cagcggtgga agccggttca aactacgcca aattctgcca caaaccgttt
    19081 gaagaagtcg tgcttggtgc tgcccaagaa agcgacaaag caaaacgtac cgagctttat
    19141 aaacaagctc aagtgatctt caaagagcaa gctccttgga ttacgattgc tcactccacc
    19201 gtttacttcc cggtgcgtaa agaagtaaaa ggttatgtga tgagtccgtt cagcttacat
    19261 aacttctaca aagtagattt agcggataaa taatccgcca acaagcggta gaatttgcag
    19321 atttttttac aaatttgacc gcttgtcctc ccctctttga actacgaggg gcagggggga
    19381 aatttggcag aagcgattgc cgaagtgaga ggattgtaaa agaggaaata aattttctgt
    19441 cttattgatt attttcttcg ttaattacta ctgtcaaatc tcccctaccc cctctttgct
    19501 aaagagggga atcagatcga gagatcagac aactttgatg aaaatccaac ctaagagatt
    19561 ttaaatgttt tcatttattt taaaacgtgt gctaatggtg atccctacct ttatagcgat
    19621 tacgttaatt acttttgccc ttgtgcattt tatccccggt gatccaattg agatccgaat
    19681 gggggaacgt ggattatcgc ctgaggttca tcaacaaatg atggaacaac tcgggctgaa
    19741 ccgaccgttg tttgaacaat acatcagcta catcaaaggt gtattgcacg gtgatcttgg
    19801 taactcattt cgtaacaacg aaccggtgct gaaggaattt tttaccctat tcccagccac
    19861 ggttgagttg gcattttttg ccctgctctg gtcgttgatt ttcggcatta ttctcggtgt
    19921 gattgctgcg gtgaaaaaag aaagttggat ttcacacact gtaaccacgc tttcactgac
    19981 cggctactca atgccaattt tctggtgggg cttgatttta attctttatt tctccacccc
    20041 gctcggctta ccggcttcag gtcgtttacc atctgaatac tggattgaag ccgaaaccgg
    20101 ttttatgctg attgatactt ggaattcgga cgaaccaggg gcatttttag cggcaattaa
    20161 atctctgatt ttgccgtcta tcgtactggg gacaatccct cttgcagttg tgacccgaat
    20221 gactcgctct tcaatgttgg aagtgttggg tgaagactat atccgcaccg ccaaagccaa
    20281 aggcttaaac actacccgaa ttgtgattgt tcacgcatta agaaatgcct tgattccggt
    20341 ggtaacggtc gttggcttaa ttgtcgggca actgctttca ggagccgttt taacggaaaa
    20401 catcttctcg tggccgggta tcggcaaatg gattattgat gcaatcaaca gccgtgatta
    20461 ccctgtacta caaggctcag tgctgattat tgctactatt attattttag tgaaccttac
    20521 ggtagatcta ctctatggca ttgtcaatcc gaggattcga catagttaga aaaattcctt
    20581 cgatttttcc cctctttagc aacgagggag ttacacaagc ggttcaaatt ccgcaatttt
    20641 ttacaagatt atttttagtt ggagttaatg atgtcaggaa taacggcggt aaatccaccc
    20701 gcacccaaaa caccgttaca ggagttttgg tactattttt gtcaaaatcg gggggcatta
    20761 ataggactta cctttattgc aatcgtcttt gttgcgtgcg tattcgcacc ttgggttgcc
    20821 ccttttgatc caatcgaaca aaatcgcagt gcgttattgc tccctcctgc ttggcttgaa
    20881 ggggggaatt ccgctcatct gctgggtact gacgatattg ggcgtgatat tctttcccgt
    20941 attatttatg gttcaagatt gtccgtcttt atcggcttag tcattgtgct actttcttgc
    21001 gtattcggcg tgattttagg tctacttgct ggctactatg gtggcacact cgacatcatc
    21061 attatgcgtt ttgttgatat tatgctggcg attccaagcc tgcttttaac tatcggcgtg
    21121 gtcactattt taggcccttc attgataaat gccgctattg cgattgcgat tgtctccatt
    21181 ccaagttatg ttcgcttgac ccgtgcttct gtattaagcg agaaaaaccg tgattatgtt
    21241 actgcttctc gtgttgctgg tgcgagcgtg cttcgcttaa tgtttgtggt gattttacct
    21301 aactgtttag ctccgcttat cgttcagatg acgatgggga tctcaaacgc tattttagaa
    21361 cttgccgccc tcggcttctt aggcattggt gcacagccgc caacaccgga gcttggcaca
    21421 atgcttgccg aatctcgtgg ctttatgcaa tcggcaaact ggctggtgac cattccgggt
    21481 ctagcgattt tatcgttagt attagctttc aacttaatgg gtgacggctt gcgtgacgcc
    21541 ctcgatccaa aactgaaaca ataggagatc taaaatggca ttattaacgg ttgatcaact
    21601 ttccgtccat tttggtgaaa ctaaaacacc atttaaagcg gtggatcgta tcagttacga
    21661 agtcaatgaa ggcgaagtat taggcattgt gggcgaatcc ggttcaggaa aatcggtaag
    21721 ttctctcgct attatgggct taatcgattt ccccggcagg gttatggctg aaaaattgta
    21781 ttttaacggc aatgatttat tggcattaaa accaaaagaa aaacaacaga ttgtaggggc
    21841 tgatgtctca atgatcttcc aagatgcaat gaccagctta aatccgagct atactgtggg
    21901 ctatcagatt atggaagccc taaaagtgca tcaaggtggc tcaaaagcca gccgtcgtga
    21961 gcgagcgatt gagttgctga cgatggtcgg tattcccgat cctgaatccc gtttagaagt
    22021 ttatccgcac cagctttcgg gtggtatgag ccagagagtg atgattgcga tggcgattgc
    22081 ctgtcgcccg aaattattga ttgccgatga gccgactact gcgttagatg tgacgattca
    22141 agctcaaatc attgatttat tacttgaatt acaacgcaaa gaaaatatgg cgttgatttt
    22201 aatcacgcac gatttagcgt tagttgccga gtctgcccat cgcattatcg tgatgtatgc
    22261 agggcaagtc gtggaagagg gcaaagccga gcagatattc aaagcaccac tgcaccctta
    22321 cacccaagca ttgctcaaag ccttaccgga atttgccgaa gggaaatccc gcctgcaatc
    22381 actaccgggc gtagtgccgg gcaaatatga ccgcccacaa ggttgcttac tcaaccctcg
    22441 ctgcccgtat gcaaccgaaa aatgccgaac cattgaaccg gcaatgcaga taatcaacgg
    22501 cagacaggtg aaatgccaca cgccactgaa tgcacagggt gagccgataa ggatagctgt
    22561 ataacgtcat aaagagtagg gacgcaatgc ttcgcgtccg ttacaagcgg tgatttttaa
    22621 ccgatttttg caaaataacg atagtggacg caaagcattg cgtccctaca ttttccgaga
    22681 aggaaaacag aatgaaagaa aataattctc tcccaccatt cctcaaagca gtggacttaa
    22741 aaaaatacta cccagttaaa aagggaatgt tcgctaaacc gaaaacggta aaagcgctgg
    22801 atggtgtctc ttttaccctt gaacgtggca aaacccttgc gattgttggc gaatccggct
    22861 gtggaaaatc aactttgggg cgaatgctca ctatgattga aagcccaacc gaaggtgaac
    22921 tgttctacaa cgggcagaat ttcttagtca atgacaaaga aacggctcaa ctacgccgta
    22981 aaaaaatcca aattgtgttt cagaacccgt atagctcgct caatccacgc aaaaaagtag
    23041 gtagcatttt agaagaacca ttattgatta acaccaactt atccgcaaaa gaacgcaaag
    23101 aaaaagtgtt ggaaatgatg gcgaaagtcg gcttaaaacc ggaattttac gaccgttatc
    23161 cgcatatgtt ttcgggcgga caacgccagc gaattgcgat tgctcggggc ttaatgttgc
    23221 agcctgatat tgtggttgcc gatgaacccg tttccgcatt agatgtttcg gttcgggcgc
    23281 aagtgttgaa tttgatgatg gatttgcaag aagaaatggg cttgtcttac gttttcatct
    23341 cgcacgattt atccgtagtg gaacatattg ccgatgaagt gatggtgatg tatttagggc
    23401 gttgcgtaga acaaggggat accaaaacta tcttcagcaa tccacgtcac ccttatacac
    23461 aagcgttact ctccgcaacc cctcgtttga acccggagca acgccgtgag cggattaaac
    23521 tgactggcga actaccaagc ccgcttaatc caccaaaagg ctgtgccttt aacgcccgtt
    23581 gcagatttgc aaccgatcgt tgctatgtgg agcgaccaga gctgaaaacc tatcaagacg
    23641 gtactcgcat tgcttgtttt gtggtggagg aaaataatta ggcaacgctc gctatttaaa
    23701 aggttaaagt ttttcaactt taacctttat ttttcatact taatactcct catcttttgt
    23761 agcaaaatct ttcattaatt tgctgatatg ctcacaatgg tgtttaaatg acaatacggg
    23821 caaataatca aatgcgtttt aacgccaatc ttctctttta aagtgagttt tcgttccttt
    23881 gagtcagaaa ttaaccttgt tacttgtcgg caattcatct atttctctcc gttaatttcc
    23941 ttgaaagaca ttgttgtaac tgcagccttg ctcgatagat taatgtat
//
LOCUS       DANLVT010000028        22996 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.028, whole genome shotgun sequence.
ACCESSION   DANLVT010000028 DANLVT010000000
VERSION     DANLVT010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22996)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22996)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22996
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.028"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            112..705
                     /gene="hisH"
                     /locus_tag="PXC99_000939"
     CDS             112..705
                     /gene="hisH"
                     /locus_tag="PXC99_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HDL5417408.1"
                     /translation="MTNLTIIDTGCANLSSVKFAFDRLGIRAEISRDLNKIQSADKLL
                     LPGVGTAAAAMAILHDRRLIDTIRNATQPMLGICLGMQLMTDFSHEGDVATLNLMSGK
                     TERLPECGLPLPHMGWNKVQYQADHPLFHDIEQGNHFYFVHSYGVLPNENTIATCDYG
                     VPFSAAIASQNFYGVQFHPERSGEAGAKLLRNFVENV"
     gene            804..1649
                     /locus_tag="PXC99_000940"
     CDS             804..1649
                     /locus_tag="PXC99_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage antirepressor protein"
                     /protein_id="HDL5417409.1"
                     /translation="MNEIKLFENSQIRSVWDSEKEEWFFSVVDIIEVLTQSSNPRRYW
                     SDLKRKIKDEEGGIELYEKIVQLKLKAPDGKMRETDATDLQGIFRIIQSVPSPKAEPL
                     KMWLAEVGKERIDEIIDPELTIDRALATYLKKGYSREWINQRLQAIQVRKELTDTWQD
                     HGVQVGREFAILTNEITQAWSGMTTRQYKDFKGLKKESLRDNMTTTELVLNMLAEAAT
                     KDIAQISHPQGLEENKTVAKRGGNVAKVARESLEAETGKPVITQQNAIDFAAVIEQVA
                     KQVKK"
     gene            1819..2568
                     /gene="hisA"
                     /locus_tag="PXC99_000941"
     CDS             1819..2568
                     /gene="hisA"
                     /locus_tag="PXC99_000941"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006995165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HDL5417410.1"
                     /translation="MQKSIIIPALDLIDGQVVRLHQGDYAKQTTYADDPIAQFADYLA
                     QGAEQLHLVDLTGAKNPAQRQTALIGKIIRETHCKIQVGGGIRTEQDVADLLAVGANR
                     VVIGSTAVKEREMVKGWFKKYGAEKFVLALDVNIDAIGQKIIAMSGWQEASGVSLEEL
                     IEDYQTVGLQHVLCTDISRDGTLAGSNVDLYREICAKYPEIQFQSSGGIGSLADIKAL
                     CGTGVAGVIVGRALLEGKFNVAEAIECWQNG"
     gene            2550..3323
                     /gene="hisF"
                     /locus_tag="PXC99_000942"
     CDS             2550..3323
                     /gene="hisF"
                     /locus_tag="PXC99_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HDL5417411.1"
                     /translation="MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAQRYAQEGA
                     DELVFYDITASSDSRTVDKSWVERVAQVIDIPFCVAGGIKTIADAEQIFAFGADKISI
                     NSPALANPELITELAKRFGVQAVVVGIDSWFEAETGKYWVNQYTGDEKRTRQTEWQLL
                     DWVEEVQKRGAGEIVLNMMNQDGVRNGYDLVQLKKVREVCQVPLIASGGAGEMVHFRD
                     AFIEANVDGALAASVFHKQIINIGELKEYLAKEGVEVRR"
     gene            3320..3706
                     /locus_tag="PXC99_000943"
     CDS             3320..3706
                     /locus_tag="PXC99_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL5417412.1"
                     /translation="MIKITALDHLVLTVADMQKTIDFYTTILGMQEITFGDNRKALLF
                     GTQKINLHQKGAEILPNAQNADCGTADLCLLTVTPLQEVIYVLQRHQVEILEGGIVPR
                     TGAVGKIESVYCRDPDGNLIEISLYV"
     gene            3734..4372
                     /locus_tag="PXC99_000944"
     CDS             3734..4372
                     /locus_tag="PXC99_000944"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HDL5417413.1"
                     /translation="MQNKIDWQKVDGLLPVIVQNAQTCEVLMLGYMNQQALEKTLAEK
                     RVTFYSRTKQRLWTKGETSGNFLNVVDMSLDCDNDTLLILANPIGETCHTGAESCFHQ
                     FEQEQPDWIFFSKLERMIAERKNADPESSYTAKLYAKGTPKIVQKVGEEAVESVIAAM
                     KNDREELVGEVADLMYHLTVLLHNADLSWAEINAKLKERHKGIGLHPEGSNK"
     gene            complement(4446..5339)
                     /gene="hslO"
                     /locus_tag="PXC99_000945"
     CDS             complement(4446..5339)
                     /gene="hslO"
                     /locus_tag="PXC99_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HDL5417414.1"
                     /translation="MNYTKDNDKLYRYLFKDRAVRGEWVRLNNTFTETLNTHHYPKAV
                     QNLLGEMLVATSLLTATMKFNGNITVQIQGDSPLKLAVVNGNDQQQLRALARVQADIA
                     DTASLAEMIGNGVLVISIIPTDGERYQGVIALDKPTIRECLEDYFARSEQLQTHLVIR
                     TGEFEGKAVAGGMLLQIMPDGTGSRDDFEHLATLTETVKDEELFGLEAEELLYRLYHE
                     EQVEVYPPQDTEFKCGCSRERSGSALLLVPAEEIEEMLEEKQGVIDMQCECCGTQYFF
                     DKAAIEGFKEETEKLSKLGLN"
     gene            complement(5583..5999)
                     /gene="hslR"
                     /locus_tag="PXC99_000946"
     CDS             complement(5583..5999)
                     /gene="hslR"
                     /locus_tag="PXC99_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated heat shock protein Hsp15"
                     /protein_id="HDL5417415.1"
                     /translation="MKNKHEKEQNDAEVRLDKWLWAARFYKTRSIAKAMIEGGKVHYN
                     GQRAKVSKAVEIGAIIKLRQGNEEKEVEVLALSDQRRGAPEAQLLYSETEKSIKHREA
                     MAFARKANALSMPHPDRRPNKKERRDLIKFKEQEFS"
     gene            6087..6629
                     /gene="nudE"
                     /locus_tag="PXC99_000947"
     CDS             6087..6629
                     /gene="nudE"
                     /locus_tag="PXC99_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP compounds hydrolase NudE"
                     /protein_id="HDL5417416.1"
                     /translation="MIKQLPEILNIKTVAKSRIFEVQAVDLRFSNGEERTYERLTPNR
                     RSSVMVIPIQNNELIFVKEYAVGSERYELGFPKGIVDAGEEPIESANRELQEEIGFGA
                     KKLDFLRSLYSSPSHMYGLMHLFLAQDLYPSKLEGDEPEPLEIVRYPLDKIDQLLADP
                     DFAEARNLSALFMLREYLKK"
     gene            6643..7461
                     /gene="cysQ"
                     /locus_tag="PXC99_000948"
     CDS             6643..7461
                     /gene="cysQ"
                     /locus_tag="PXC99_000948"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HDL5417417.1"
                     /translation="MQTLTQPLLENIINIAKAAGEQLKQLYARSVAIKIKADCTPVTE
                     ADLIISQFLTERLKQLTPDIPVLSEEFCDIPFAERQQWQEYWIIDPIDGTQQFINRTG
                     QFSVVIALVQKREGRNQPVLGVIHAPILGKTYFSMEGSGSFLQENGEIRPLVKPKRAE
                     NALLIVTVGSDLHAEQAKNAISAPQIECVKYGSGSLKAGLVAEGKADCYIRFGDTGEW
                     DTAVAEVLLSEMGGKIFDFNFSPLTYNQRESLINPYFVMVADGSIDWDKIFLFK"
     gene            7536..9023
                     /locus_tag="PXC99_000949"
     CDS             7536..9023
                     /locus_tag="PXC99_000949"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HDL5417418.1"
                     /translation="MNAENSCIVIFGASGDLTFRKLIPALYNLYKIGRLGEHFSVLGV
                     SRSELTDESFRQKMRDALVKFEKASGEELDKFCEHLYYQAVNTSDAVDYAKLLPRLDE
                     LHDKYQTAGNTLYYLSTPPSLYGVIPECLAAHGLTTEEFGWKRIIVEKPFGYDIETAK
                     KLDVQIHKCFEEHQIYRIDHYLGKETVQNLLVLRFSNGLFEPLWNRNFIDYVEITGAE
                     SIGVEDRGGYYDGSGAMRDMFQNHLLQVLAMVAMEPPAIINANSMRDEVAKVLYCLHP
                     LTEEDVKHNVVLGQYARGTVDGKEVPAYLEEKGVPADSNTETFMAVKCKIDNWRWAGV
                     PFYVRTGKRLPTRVTEIVIHFKTTPHPVFSQNAPENKLIIRVQPDEGISMRFGLKKPG
                     AGFEAKEVSMDFRYSDLSSSSSLLTAYERLLLDALKGDATLFARTDAVHACWKFVQPI
                     LAYKANRGRVYEYESGTWGPTEADKLIARHGKVWRKPSGTMKKKV"
     gene            9163..9861
                     /gene="pgl"
                     /locus_tag="PXC99_000950"
     CDS             9163..9861
                     /gene="pgl"
                     /locus_tag="PXC99_000950"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HDL5417419.1"
                     /translation="MNKVIFPTAQAAVEQIAKEFIEYSHQNRPVHISLSGGSTPKLLF
                     KTLAQAPFNTEIQWQNLHFWWGDDRMVAPTDPESNYGEVQKLLFDHIDIPSENIHRIR
                     GEENVEQELARFSAELTACVPNLAFDWIILGMGTDGHTASLFPHQTDFNDQNVAVIAK
                     YPETGQIRISKTASLIEKAKRITYLVTGASKAEILKEIQTTPAENLPYPAAKIQAENG
                     VTEWYLDSEAANLL"
     gene            10037..10924
                     /locus_tag="PXC99_000951"
     CDS             10037..10924
                     /locus_tag="PXC99_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ORF6N domain-containing protein"
                     /protein_id="HDL5417420.1"
                     /translation="MNPIQLIEPNINSKIFTIRGEQVMLDVHLAELYQVDTRTFNQAV
                     KRNEERFPDIFRFQLTENEWLSLRSQFVILNENSGRGQHRKYLPYVFTEQGIAMLSAV
                     LRSEVAVQVSIKIMQAFVQMRHLLQTNSGLVQRLESVERKQLEMSGQLEQVFQSLEGN
                     KPKMQGVFFEGETFNAYQFVTELVRGAKSSLILIDNYVDDTVLTLFTKRSHNVSVTIY
                     TKQISKQLALDLEKYNSQYAHINVKIFDKSHERFLIIDEKELYHIGASLKDLGKKWFA
                     FSKMDLSMSRILEKLAENQ"
     gene            10934..11623
                     /locus_tag="PXC99_000952"
     CDS             10934..11623
                     /locus_tag="PXC99_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HDL5417421.1"
                     /translation="MKTLGILGGMSAESTVSYYLDINRSVNKVLGGNSSAKILISSVN
                     FEEIVQCQKQGNWQAAAEILSEQARLLEQAGAEGILLATNTMHKIADQISSHISVPFL
                     HILDCVAEAISAQGLQKVALLGTKFTMSDNFYKDGLLERGITSIVPDEETQQEIHRII
                     FEELCLGKITESAKAFYLQTIQQLSEQGAEGVILGCTEIGLLINQNDNPLPFFDTAAL
                     HSQMAVEFILG"
     gene            11706..13160
                     /gene="gnd"
                     /locus_tag="PXC99_000953"
     CDS             11706..13160
                     /gene="gnd"
                     /locus_tag="PXC99_000953"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating NADP(+)-dependent
                     phosphogluconate dehydrogenase"
                     /protein_id="HDL5417422.1"
                     /translation="MSQKGDIGVIGLAVMGQNLILNMNDNGFKVVAYNRTTSKVDEFL
                     EGAAKGTNIIGAYSLEDLAAKLEKPRKVMLMVRAGEVVDQFIEALLPHLEEGDIIIDG
                     GNSNYPDTNRRVKALAEKGIRFIGSGVSGGEEGARHGPSIMPGGDESAWQYVKPIFQA
                     ISAKTDKGEPCCDWVGRDGAGHFVKMVHNGIEYGDMQLICEAYQFLKDGLGLSYDEMH
                     EIFKEWKNTELDSYLVDITTDILAYKDEDGEPLVEKILDTAGQKGTGKWTGINALDFG
                     IPLTLITESVFARCVSAFKDQRVAASRLFNKEIGKVEGDKKVWVEAVRRALLASKIIS
                     YAQGFMLIREASEQFGWDINYGNTALLWREGCIIRSRFLGNIRDAYEANPYLVFLGSD
                     PYFKDILENCLADWRKVVAKSVEIGLPVPCMASAITFLDGYTSARLPANLLQAQRDYF
                     GAHTYERTDKARGEFFHTNWTGRGGNTASTTYDV"
     gene            13295..13888
                     /locus_tag="PXC99_000954"
     CDS             13295..13888
                     /locus_tag="PXC99_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase"
                     /protein_id="HDL5417423.1"
                     /translation="MLTDQDIFNRYQTKKSEFEKQADISLIGHSLFDMWGDMENGTPN
                     LAGKTVANLGLSGTSTRQYLDVITRQERIQHVGDNVFIFLGVNDIVKEPDYSPKQVLE
                     WIGEIVDSLRKINPNANFFLLEATPVNNITTTNNAAIKELNAYFEANIPSDLTYVKTW
                     EYFADKEGNLDLTLCHDGLHFTQAGYDRLEAILTKHL"
     gene            complement(13959..16823)
                     /locus_tag="PXC99_000955"
     CDS             complement(13959..16823)
                     /locus_tag="PXC99_000955"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HDL5417424.1"
                     /translation="MTKQFTMEDRFNPSAVEQALYQHWESQGYFKPSEDINAPSYCIA
                     IPPPNVTGSLHMGHAFQQTLMDTLIRFNRMEGNNTLWQTGTDHAGIATQMVVERKIAA
                     EEGKTRHDYGREAFINKIWDWKAYSGGTISQQMRRLGNSIDWDRERFTMDEGLSNAVK
                     EVFVRLHEEGLIYRGKRLVNWDPKLHTAISDLEVENKESKGSLWHFRYPLANGAKTAD
                     GLDYLVVATTRPETMLGDTAVAVHPEDERYQALIGKSVILPLANREIPIIADEYVDRE
                     FGTGVVKITPAHDFNDYEVGKRHGLPMVNVMTLNADIRAEAEIIGTDGKPLSDYTAPI
                     PADYQGLERFAARKKIVADFEALGLLDQIKPHDLKVPYGDRGGVPIEPMLTDQWYVSV
                     KPLAEVATKAVEDGEIQFVPKQYENLYFSWMRDIQDWCISRQLWWGHRIPAWYDEQGN
                     VYVARDEAEVRAKHNLPADLPLKQDEDVLDTWFSSGLWTFSTLGWPEQTKELKMFHPT
                     DVLITGFDIIFFWVARMIMFTMHFIKDENGKPQVPFKTVYVTGLIRDEQGQKMSKSKG
                     NVLDPIDMIDGISLDDLLEKRTGNMMQPQLAEKIAKATRKEFAEGIVAHGTDALRFTL
                     TALASNGRDINWDMKRLEGYRNFCNKLWNASRYVLTNDKLDLSEGDVEFSLADRWIES
                     QFNRTVETFRTALSQYRFDLVANAIYEFTWDQFCDWYLELTKPIFFKGTDVQRRGASR
                     TLVNVLEKLLRLIHPVMPFITEEIWQKVKGFVGIEADTIMLQKFPQFDPLAIDETAES
                     QINFIKEVIVAVRNIRAESNIAPSKGLDLIARNFSADEVSILNANEVLLKSMAKLDSV
                     KVLENGENAPLSVAKLVANGEILIPMAGFINKEAELARLTKEMDKLKGEVARIEGKLS
                     NEAFVAKAPEQVIAKEREKMQEYLSGLEKLQVQYQEIEAL"
     gene            complement(16940..17638)
                     /locus_tag="PXC99_000956"
     CDS             complement(16940..17638)
                     /locus_tag="PXC99_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417425.1"
                     /translation="MKQNRKKSKKVIGTHKKENGLKQFIKNNKIPIILISAIWSIFTT
                     DILERIANMPIIWKNFEENYLYNKKLDGLWSTNTNYIIDYKLLNIPEEQPNVIIEFMV
                     NKDDNSILGEMTSTALCELIPLTWSFRLESPKPTLLNLIFDRELKLSYLVSGGYTELS
                     TFKIKEINSNLGTLTLTTQEDKTGIFPPTIKLINFSSNIEDDIKEIEQSCLNSRKQLW
                     EKRRKMQEEQKIPN"
     gene            complement(17883..18476)
                     /locus_tag="PXC99_000957"
     CDS             complement(17883..18476)
                     /locus_tag="PXC99_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417426.1"
                     /translation="MHNNLAIFYCGTNGAGKSTLRSFNQDKVEIVIDSDNIAMQINPL
                     NPRLADIEAGRKAIELFQFAVKNQVAFSMESTLSGKSILKRMENAKAGYFKTRLNYIG
                     VDSYKINIARVKARVKAGGHFIDEETIRKRYHISRENLIEAIFINDETLIYDNSETKP
                     NLILQIADKKVIKISDKIPNWCNQLCDELVELGFKTT"
     gene            complement(18466..18636)
                     /locus_tag="PXC99_000958"
     CDS             complement(18466..18636)
                     /locus_tag="PXC99_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417427.1"
                     /translation="MTSREELLKKQRELDILFTAWFEEKKKHEVLTYRRENGDLIQHY
                     PDGTEKVIEYAQ"
     gene            complement(18638..19380)
                     /locus_tag="PXC99_000959"
                     /pseudo
     CDS             complement(18638..19380)
                     /locus_tag="PXC99_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250915.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
     gene            complement(19377..19820)
                     /locus_tag="PXC99_000960"
     CDS             complement(19377..19820)
                     /locus_tag="PXC99_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL5417428.1"
                     /translation="MLKNLSWRAKRFDELSTQELFEIYHARTAVFVVEQNCPYQEVDN
                     KDLQAVHFFTKNAKNLTAYCRLIPANDGVHIGRVLVVKENRGSGLARELVQKAMDYCG
                     EHFPAQPIHAQAQSYLQGFYESFGFKAVSEVYLEDGIAHLDMVLE"
     gene            complement(19814..20251)
                     /locus_tag="PXC99_000961"
     CDS             complement(19814..20251)
                     /locus_tag="PXC99_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HDL5417429.1"
                     /translation="MKQVQFYLLSQADAAELSAAEMQACELAAQAWRLGKRVLIACET
                     EQQALNIDEALWARDPDSFVPHNLSGEITTYPTPIEISWKGKRNAQRRDLLISLQTQL
                     PEFIGSFTQIIDFVPVEETAKAQARDRYKQYRQLGWQLETIQC"
     gene            20490..20933
                     /gene="lysM"
                     /locus_tag="PXC99_000962"
     CDS             20490..20933
                     /gene="lysM"
                     /locus_tag="PXC99_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding protein LysM"
                     /protein_id="HDL5417430.1"
                     /translation="MGLFDFVGDIGRKLFNKEEDASKAVTEHLAEDNPGVENVNVTVE
                     NGVAKISGIASTAAAVEKAVLMAGNVAGITEVNIDEVTLPDDVQLASDDELYVIQKGD
                     TLWEIATKAYGNGAKYKAIVEANKEVIKDENKIFPGQKIRIPKGL"
     gene            complement(20987..21838)
                     /locus_tag="PXC99_000963"
     CDS             complement(20987..21838)
                     /locus_tag="PXC99_000963"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005701564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HDL5417431.1"
                     /translation="MKQYLDLCNRIVSEGKWVANERTGKHCLTVINADLTYDVEKGEF
                     PLVTTRRSYWKAAIAELLGYIRGYSNAADFRQLGTKSWDANANENAQWLANPYRKGED
                     DMGLVYGAVGRNFPKPDGGSVDLLRQIVDDLKKGIDNRGEIYTFYHPGAFHMGCLRPC
                     LHSHHFSLLDGTLYLNSTQRSADVPLGLNWNMIQCYTFLALMAQITGHKAGQAFHKIV
                     NAHIYEDQLELMRDVQLKREPLNAPKLIINPDIKSLEDLETWVSLDDFKVEGYEYHPA
                     IQYPFSV"
     gene            21931..22482
                     /locus_tag="PXC99_000964"
     CDS             21931..22482
                     /locus_tag="PXC99_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417432.1"
                     /translation="MKGIMKSILVFSTAVFLAACSSNKSGWTRLNDNDVDQKSYAIAY
                     GATAQTYADRVNESYDINSFMNGVNDWYTKKVTLPIEQIRAITINRMLDHNVYAYYSG
                     VIYAADLQANFNHLDPNCWGLVQPASMTQGIHDAMLDLQKNKVRGDEYIKNGVEQILH
                     LCVKTIAEDENESQSKGKTKKHK"
     gene            22691..22785
                     /locus_tag="PXC99_000965"
     tRNA            22691..22785
                     /locus_tag="PXC99_000965"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:22726..22728,aa:Ser,seq:gct)
     gene            22799..22875
                     /locus_tag="PXC99_000966"
     tRNA            22799..22875
                     /locus_tag="PXC99_000966"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:22833..22835,aa:Arg,seq:acg)
BASE COUNT         6581 a         4674 c         5107 g         6634 t
ORIGIN      
        1 tagtttattt ttggcaatta tcaaaagatt cgataagaaa gcttttgaag gaaacagata
       61 tattgagtca attttacttc actataagaa atacttaact caggaaacta aatgaccaac
      121 ctcaccatca tcgacacagg ctgtgccaac ctgtcttcgg tcaaatttgc ttttgaccgt
      181 cttggcattc gggctgagat ctcgcgagat ctcaacaaaa tccaatctgc cgataaattg
      241 ctactccccg gtgtgggaac agcagcggcg gcgatggcga tcttgcacga tcgccgactt
      301 atcgacacca ttcgcaacgc cacccagccg atgcttggca tctgcttagg aatgcagtta
      361 atgacggact tttcccacga aggcgatgtg gcaacactga acttaatgag tggcaaaacc
      421 gaacgcttgc ctgaatgcgg tttgccgttg ccgcatatgg gctggaacaa ggtgcaatac
      481 caagccgacc atccgctatt tcacgacatt gagcaaggca atcatttcta ttttgtgcat
      541 agctacggtg tgctaccgaa tgagaacacc atcgccacct gcgactacgg cgtgccgttt
      601 tccgctgcca ttgccagcca aaacttctac ggcgtacagt tccaccccga gcgttcgggc
      661 gaggctgggg cgaagttgct caggaatttt gtggagaatg tctgattttg tgatctcgat
      721 cgaaaagttt gaaaataggg cttgatttct cgctttattt cgacaaaatt actgttaatt
      781 taaccagtga aagaaggtga gaaatgaacg aaattaaact atttgaaaac agccaaatcc
      841 gctcggtgtg ggatagcgaa aaagaagagt ggtttttctc ggtggtggac attatcgagg
      901 tgctgacgca aagtagcaat ccacgccgtt attggagtga tttaaagcgg aaaatcaagg
      961 acgaagaggg cggaattgaa ctgtacgaaa aaatcgtaca gttgaaatta aaagccccag
     1021 acggaaaaat gcgggaaacc gatgccacgg atttacaagg cattttccgt attattcagt
     1081 ctgtgccaag cccgaaagcc gagccgttga aaatgtggct ggcagaggta ggcaaagagc
     1141 ggattgatga gattatcgat cctgaattga ccattgaccg agctttggct acttacttga
     1201 aaaagggata ttcccgtgag tggattaacc aacgcttgca agccattcag gtgcgaaaag
     1261 aactgacgga tacttggcaa gatcacggtg tgcaagtggg cagagaattt gcgattctca
     1321 ccaatgaaat cacacaggcg tggagcggta tgactactcg ccaatataag gatttcaaag
     1381 ggctgaaaaa ggaaagtctg cgagacaata tgacgaccac cgagttggtg ctgaatatgc
     1441 ttgctgaggc tgccaccaaa gacatcgctc aaatcagcca cccacagggc ttggaagaaa
     1501 ataaaaccgt tgccaaacgg ggcggaaatg ttgcaaaagt ggctcgggaa agtttggagg
     1561 cagagaccgg caaaccggtg attacgcaac aaaatgcgat tgatttcgct gcggtgattg
     1621 aacaagtggc gaaacaggtg aagaaataag tgcggtcggt tttttgcaag tttttggaag
     1681 aatttgaccg cttgtacccc atacgagccg tatggggcta gataaaccaa gctactccgt
     1741 agcttagaga ggcagtcgca gcgcgactgg gattattcag cctagcacgg ctcgtgctag
     1801 gcacacagga acaataatat gcaaaaatcc atcattatcc ccgccctcga ccttatcgat
     1861 gggcaagtag ttcgcctaca tcagggcgat tatgcgaaac agacgactta tgccgatgac
     1921 ccgattgccc aatttgccga ctacttggca caaggggcgg agcagttaca tttggtcgat
     1981 cttacagggg cgaaaaatcc ggctcaaaga cagaccgcac ttatcggcaa aattattcgt
     2041 gaaacccact gcaaaattca agtgggcggc ggtatccgca ccgagcagga tgtggcggat
     2101 ttacttgctg ttggagcaaa ccgtgtggtg attggttcga ctgcggtaaa agagcgtgaa
     2161 atggttaaag gctggttcaa aaagtacggt gcggagaaat ttgtgctggc actggatgtg
     2221 aacattgatg caatcggtca aaaaatcatt gcgatgagcg gctggcaaga ggcaagtggt
     2281 gtgtcgctcg aggagttgat tgaagattat caaaccgtgg gcttgcaaca cgttttatgc
     2341 accgacattt cccgagacgg cacgctggca ggttcaaatg tagatctcta tcgagaaatc
     2401 tgtgccaaat acccagagat tcaatttcag tcctcaggcg gtatcggctc gcttgccgac
     2461 atcaaagcgc tttgtggtac gggcgtggct ggcgtgattg tcggtcgtgc gttgttggaa
     2521 ggtaaattta atgtagcgga ggcaatcgaa tgttggcaaa acggataatt ccttgtttag
     2581 acgtgcgtga cgggcaagtt gtgaaaggcg tgcagttccg caaccacgaa atcatcggcg
     2641 acattgtgcc actcgcccag cgttatgccc aagagggggc ggatgagttg gtgttttacg
     2701 atattaccgc ctcaagtgac agcagaacgg tggataaaag ctgggtggaa cgtgtggcac
     2761 aggtgattga tattccgttc tgtgtggcag gcggaatcaa aaccattgcc gatgcggagc
     2821 agattttcgc tttcggagcg gacaaaatct ccatcaattc cccagccctt gccaaccccg
     2881 agctgattac cgaactggca aagcgctttg gcgtgcaggc ggtggtggtt ggtattgata
     2941 gctggttcga ggcagaaacc ggcaaatatt gggtcaatca atataccggc gatgaaaaac
     3001 gcacccgcca aaccgaatgg caattgttgg attgggtgga ggaagtgcaa aagcgaggag
     3061 caggcgaaat cgtgctgaat atgatgaacc aagacggcgt acgcaacggc tacgatttgg
     3121 tgcaactgaa aaaagtgcgt gaagtttgcc aagtcccact catcgcctca ggcggtgcag
     3181 gcgaaatggt gcatttccgt gatgctttta ttgaggcaaa tgtggatggt gcgttggcag
     3241 cgagtgtgtt tcataaacaa attatcaata ttggggagtt gaaggaatat ttggcgaagg
     3301 aaggggttga ggtgcgtaga tgattaagat tactgcctta gatcatctgg ttttaaccgt
     3361 tgccgatatg caaaaaacca ttgattttta tacgaccatt ttgggtatgc aagaaatcac
     3421 ctttggcgat aatcgcaaag cgcttttgtt tggcacacag aaaatcaacc tccaccaaaa
     3481 aggtgcagaa atcctaccca atgcccaaaa tgccgattgt ggcacggcag atttatgcct
     3541 cttaacggta actccacttc aggaggttat ctatgtgtta cagcgacatc aggtggagat
     3601 tttggaaggt gggattgtgc ctcgtacggg ggcagtggga aaaattgagt cggtttattg
     3661 ccgtgaccct gatggtaatt tgattgaaat aagcctatat gtctaaacaa gcggtcaaaa
     3721 aaaggaagaa aaaatgcaaa ataaaataga ctggcaaaaa gtggacggct tactgcccgt
     3781 tatcgtccaa aacgcccaaa cctgcgaagt actgatgtta ggatatatga accaacaagc
     3841 cctcgaaaaa acgctggctg aaaagcgagt gactttttac tcccgtacta aacaacggct
     3901 gtggacgaaa ggcgaaacct cgggcaattt cctaaacgtg gtggatatga gtttggattg
     3961 tgataacgac accctgttaa tcctcgctaa ccctatcggc gaaacctgcc atacgggggc
     4021 ggagagctgt tttcatcagt ttgaacaaga acaaccagat tggatctttt tcagcaaatt
     4081 agaacgaatg atagccgaac gtaaaaatgc tgatccggaa agttcttata ccgctaaact
     4141 ttacgccaaa ggcacgccaa aaatcgtcca aaaagtaggg gaagaggcag tagaaagcgt
     4201 gattgcggca atgaaaaatg atcgggaaga gttggtcggt gaagtggctg atctgatgta
     4261 tcacttaacg gtgttattgc acaatgccga tctctcgtgg gcagagatca atgctaaact
     4321 aaaagaacgc cacaaaggga ttgggttaca cccagaaggc tcaaataagt aaaatgcaag
     4381 cggtcaaatt tcaccgtttt tttacaaatt gcaaaaaaga caagaaactt gaccgcttgt
     4441 ttagcttaat ttaaccctaa cttacttaat ttttcagttt cttccttaaa gccttcaatc
     4501 gccgctttgt caaagaaata ttgtgtcccg cagcattcac attgcatatc gatcacgcct
     4561 tgtttttcct ccaacatttc ttcgatttct tctgccggca ccagtaataa tgcggagcct
     4621 gaacgctctc ttgagcagcc acatttaaat tcagtatctt gtggtgggta aacttctact
     4681 tgctcttcgt ggtagaggcg atagagcaat tcttctgcct ctaaaccaaa taactcttca
     4741 tcttttacgg tttcagtgag cgtggctaaa tgctcaaaat catctcttga gcctgtgccg
     4801 tccggcataa tttgtagcaa cataccgcct gccactgctt tgccttcaaa ttcgcctgtg
     4861 cggataacga ggtgggtttg taattgctcg gagcgggcga agtaatcttc taaacattca
     4921 cgaatggttg gtttatcgag agcaatcacc ccttgataac gttcaccatc ggttgggata
     4981 atagaaatca ctaatacacc attgccgatc atttccgcta acgaggctgt gtctgcaata
     5041 tctgcctgaa cacgggctaa agcacggagt tgctgttggt cgttaccgtt cacaaccgcc
     5101 aattttaacg ggctgtcacc ttgaatctgc acagtaatgt tgccgttaaa tttcattgtt
     5161 gcagtcagca aactggttgc gactaacatt tctccgagta aattttgtac tgctttaggg
     5221 tagtgatggg tgtttaaggt ctcggtaaag gtgttgttta aacgcaccca ttcgccccgt
     5281 accgctcggt ctttgaataa atagcggtag agtttgtcat tgtctttggt gtaattcatt
     5341 ttgattcctc gttgcaagcg gtcgattatt actcacaaaa ttatttctaa ttttgttcgc
     5401 tcctacggag ccgttggcaa agccaacgtt caaaatgcat tgcattttgt ggctaaaaat
     5461 gtgcaaatcg aacgctgtag gggcgaatca atgttcgccc gaaataatta tataggggcg
     5521 aaaaattttt cgcccctact taggatattc aatataggga ttatttttct gattgcaagg
     5581 gcttagctaa attcttgctc tttgaatttg attaaatccc gccgttcttt tttgtttgga
     5641 cggcgatcag ggtgtggcat tgaaagagca ttcgctttgc gggcaaatgc cattgcctca
     5701 cggtgtttaa tgcttttttc ggtttcactg tagagcagtt gggcttccgg agcccctcgg
     5761 cgttggtcac tgagggctaa cacttccacc tctttttctt cattgccttg gcgaagtttg
     5821 atgatggcac cgatctccac cgctttgcta actttagctc tttgcccatt ataatggact
     5881 ttaccccctt caatcattgc tttggcaatc gaacgggttt tataaaaacg agccgcccaa
     5941 agccatttat ctagccgaac ttcggcgtcg ttttgttctt tttcgtgttt atttttcatt
     6001 ttctgcctta aaatcaaaac aatagtcgaa atattagagc gaaagtgaga tttttcaact
     6061 aaaataactc aaaaaggtga gataaaatga taaaacaact tcctgaaatt ttgaacatta
     6121 aaacagtagc gaaatctcgc atttttgagg tgcaagcggt cgatttacgc ttttctaatg
     6181 gcgaagagcg aacttacgaa cgacttacgc cgaatcgccg ttcttcggta atggtgattc
     6241 cgattcaaaa caacgagctg atttttgtga aagagtatgc ggtcggctcg gagcgttacg
     6301 agctgggttt tccgaaaggc attgtggatg caggtgaaga gccgattgag agtgcgaacc
     6361 gtgaattaca agaagaaatt ggttttgggg cgaaaaaatt agattttctg cggtcgcttt
     6421 acagttcgcc aagccatatg tacggcttaa tgcacctgtt tttggcacaa gatctgtacc
     6481 catcaaaatt ggaaggcgat gagcctgaac cgctggaaat tgtgcgttat ccgttggata
     6541 aaattgatca attattggca gatcctgatt ttgccgaagc acggaatttg tccgctctat
     6601 ttatgctacg agaatactta aaaaaatagg caaggagcta ttatgcaaac gctaactcaa
     6661 cccctactcg agaatattat caatattgcc aaagcagccg gtgagcagtt aaagcagctt
     6721 tatgcccgct cggtggcaat taaaatcaaa gccgattgca caccggtgac ggaagcggat
     6781 ctgattatca gccaattttt aactgaacgc ttgaagcaac tcacaccaga tattccggta
     6841 ttatcggaag agttttgcga tattccgttt gccgaacgcc aacaatggca agaatattgg
     6901 attatcgacc cgattgacgg cacacaacag tttattaacc gcaccggtca attttcagtg
     6961 gtgattgcgt tagtgcaaaa acgtgagggt agaaatcagc cggtgctggg cgttattcat
     7021 gctccgatat taggaaaaac ctattttagt atggaaggta gcggtagctt tttgcaagaa
     7081 aatggagaaa ttcgaccgct tgtcaaaccg aaacgtgcgg agaatgccct tttgattgtt
     7141 accgtaggca gcgatttaca tgcagaacaa gctaaaaatg ccatttcagc cccacaaatt
     7201 gagtgtgtaa aatatggttc gggcagtcta aaagccggtt tagtggcaga agggaaagcc
     7261 gattgttata tccgttttgg tgacaccggc gaatgggata ctgctgtggc agaagtgctg
     7321 ttaagtgaaa tgggcggcaa aattttcgac tttaattttt cgccgctgac ttataatcag
     7381 cgagaaagtt tgattaatcc ttattttgtg atggtggctg acggctcgat agattgggat
     7441 aaaatatttt tattcaaata ggtagttccg attagcaatt tttatgataa tcttgcaccc
     7501 aacaaaattt taacaattag caataggata aataaatgaa tgctgaaaat agctgtatcg
     7561 tcatttttgg tgcttccggt gacttaactt ttcgtaaatt aattcctgct ctttataact
     7621 tatataagat tggcagattg ggcgagcatt tttccgtcct aggtgtttct cgttcagaat
     7681 taaccgacga atctttccgc caaaaaatgc gtgatgcgtt agtcaaattt gaaaaagcaa
     7741 gcggtgaaga attagataaa ttttgcgaac atctttatta ccaagctgta aatacctctg
     7801 atgcagtgga ttatgccaag ttgctgcctc gtcttgatga gctacacgat aaatatcaaa
     7861 cagccggtaa cacgctttat tacctctcca cgccaccaag tttatatggc gtgattccgg
     7921 aatgtttagc cgctcacggc ttaactaccg aagagtttgg ctggaaacgg attattgttg
     7981 aaaaaccatt cggctacgat atcgaaaccg ccaaaaaatt agacgtacaa atccacaaat
     8041 gctttgaaga gcatcaaatc taccgtatcg accactattt aggtaaagaa acggtacaaa
     8101 acttactcgt tttacgtttt tctaacggct tatttgaacc gctttggaac cgtaatttta
     8161 ttgattatgt ggaaattacc ggggcagaat ccatcggcgt tgaagatcgt ggcggttact
     8221 atgatggctc gggggcaatg cgtgatatgt tccaaaacca cttattgcaa gtattagcca
     8281 tggttgcaat ggagccaccg gcaattatta atgctaattc aatgcgtgat gaagtcgcaa
     8341 aagtgctata ttgcttgcat ccgttaactg aagaagacgt taaacacaat gtggtgttag
     8401 gtcagtatgc tcgtggcacg gtagacggca aagaagtgcc ggcttacttg gaagaaaaag
     8461 gcgtgccggc tgattccaac actgaaacct ttatggcggt aaaatgtaaa atcgataact
     8521 ggcgttgggc aggtgtgccg ttctatgtgc gaaccggtaa acgcttacca acccgtgtga
     8581 cggaaatcgt aattcatttt aaaactacac cacacccggt atttagccaa aatgctccgg
     8641 aaaataaatt gattattcgt gtgcaaccgg acgaaggcat ttcaatgcgt ttcggcttga
     8701 aaaaaccggg agcaggcttt gaagcgaaag aagtctcaat ggatttccgc tattctgatt
     8761 taagttcatc atcaagctta ctcaccgctt atgaacgctt actattagac gcacttaaag
     8821 gtgatgcaac cttatttgcc cgtactgatg ctgtacacgc ttgttggaaa tttgtgcaac
     8881 cgattttagc ctacaaagct aatcgtgggc gtgtgtatga atatgaatcc ggcacttggg
     8941 ggccaaccga ggcagataaa ttaatcgcca gacacggcaa agtatggcga aaaccgtccg
     9001 gtacaatgaa gaagaaagtg taaatttcag ttcccctctt tagcaaagag gggctagggg
     9061 agatttggca gaagttatat acgctcatac gaaatattga aatcgtaatc aaatctcccc
     9121 ctcccctctt ttctaaagag gggtgatcta acgaggcaaa ttatgaataa agttattttc
     9181 cccaccgccc aagctgcggt tgaacaaatt gctaaagagt ttattgaata cagccatcaa
     9241 aaccgcccgg tgcatatttc cctttccggt ggttcaaccc ccaaattatt attcaaaacc
     9301 ttagctcaag caccgtttaa taccgaaatt caatggcaaa acctgcattt ctggtggggg
     9361 gatgatcgaa tggttgcccc aaccgatccc gaaagtaact acggcgaagt gcagaaatta
     9421 ctgttcgatc acatcgacat tccaagcgaa aatattcacc gcattcgtgg tgaagagaat
     9481 gtagaacaag aacttgcaag attttcggca gaattgaccg cttgtgtgcc gaacttggcg
     9541 tttgattgga ttattttagg aatgggaaca gacgggcata ccgcctcact gttcccacat
     9601 caaacagatt ttaatgatca gaacgttgcc gtgatcgcca aatacccaga aacagggcag
     9661 atccgcattt ccaaaacggc atctttaatt gaaaaagcca aacggatcac ttacttggtc
     9721 acaggagcaa gcaaagcgga aattttaaaa gaaatccaaa ccactccggc agaaaattta
     9781 ccttatcctg ccgccaaaat tcaggcggaa aatggggtaa cggaatggta tttggatagt
     9841 gaggcggcta acttactcta ggtcacaatc agtgaccttt acaagcggtt aaattttaga
     9901 aaaatgttgc aaagtatttt tgtgatattc atcgaaaaag cagaaaaatc tgctcgtggt
     9961 ataggccaaa aattggcata gtctttctta ttttgagatc acaaaagtga tcttcactga
    10021 agaataagga agaaagatga atccaattca attaattgaa ccaaacatta actctaaaat
    10081 ttttactatt cgtggcgagc aagtaatgct agatgttcat ttggcagagc tttatcaggt
    10141 agatactcga acctttaacc aagcagtaaa acggaatgaa gagcgatttc ctgacatatt
    10201 tcgttttcaa ttaacagaaa acgaatggct atctttaaga tcacaatttg tgatcttaaa
    10261 cgaaaatagt gggcgtggcc aacataggaa atatcttcct tatgtcttta ccgagcaagg
    10321 cattgcaatg ctttcggcag tattgcgtag tgaagttgcg gtgcaagtta gcattaagat
    10381 tatgcaagcc tttgtgcaaa tgcgtcatct tttgcaaaca aatagtggtt tggtacaacg
    10441 cttagaaagt gtagagcgta aacagttgga gatgtctggg cagttagagc aggtgtttca
    10501 atctcttgaa ggcaataagc ctaaaatgca aggggttttc tttgaaggtg aaacctttaa
    10561 cgcttatcag tttgttacgg aattagtgag aggtgcaaaa tcatcgctga ttttaattga
    10621 taactatgta gatgataccg ttttaacttt atttacgaaa cgatcgcata acgtatcagt
    10681 tacgatttat acgaaacaaa tatctaagca acttgcatta gatttggaaa aatataacag
    10741 ccaatatgct cacattaatg tgaaaatatt tgataaatct cacgagcgat ttttgattat
    10801 tgatgaaaaa gagctttatc atatcggtgc atcacttaaa gatttaggta agaaatggtt
    10861 cgctttttct aaaatggatt tatcaatgag ccgcatttta gaaaagttag cggaaaatca
    10921 ataaggtata ttaatgaaaa cactcggcat tttaggtgga atgagtgcgg aaagcacggt
    10981 ttcttattat ttagatatta atcgctcggt gaataaagta ttaggtggaa atagcagtgc
    11041 caagatttta atttcgagtg tcaattttga agagattgta caatgccaaa agcagggaaa
    11101 ttggcaagca gccgctgaaa ttttatctga acaagctaga ttgctagaac aagccggagc
    11161 agaaggcatt ttattggcaa ccaacacaat gcacaaaatt gccgatcaaa ttagtagcca
    11221 tatctctgtg ccgtttttgc atattttgga ctgtgtggct gaggcgattt cagctcaagg
    11281 tctgcagaaa gtagcactcc ttggcacaaa atttactatg agtgataatt tttacaaaga
    11341 cggtttattg gagcgtggta tcacatcaat agtaccagat gaggaaacgc aacaagaaat
    11401 tcatcgcatt attttcgagg aactctgttt aggcaagatt actgaaagtg ccaaagcgtt
    11461 ttatcttcag actattcaac aacttagtga acaaggtgca gaaggtgtga ttttaggttg
    11521 taccgaaatc gggttgctga ttaaccaaaa cgacaatccg ttaccgtttt tcgatacagc
    11581 agcattacac agccaaatgg cggtggagtt tattttaggt taataaatgt tacaagcggt
    11641 caaatttgca aaaaatttta ccaattcgac cgcttgcata gaatcaaaaa caataggagc
    11701 aaacaatgtc acaaaaaggc gatatcggcg tgattggact cgccgtaatg ggtcaaaatt
    11761 taattttgaa tatgaatgac aacggcttta aagtggtggc gtacaaccgc actacttcaa
    11821 aagtggatga gttcttagaa ggtgcggcga aaggcacgaa cattatcggt gcttactcgt
    11881 tagaagattt agcggcgaag ttggaaaaac cgcgtaaagt gatgctaatg gtgcgtgccg
    11941 gtgaggtggt ggatcagttt atcgaggctc ttctgccaca tttagaagaa ggcgacatca
    12001 tcattgatgg cggtaactca aactatccgg acaccaaccg ccgtgtgaaa gcgttagcgg
    12061 aaaaaggcat tcgctttatc ggctcaggtg tatcgggcgg cgaagagggt gctcgtcacg
    12121 ggccgtcaat tatgccgggc ggtgatgaat ctgcgtggca atatgtgaag ccgattttcc
    12181 aagcaatttc agccaaaacc gacaaaggtg agccttgttg tgactgggtt ggtcgtgacg
    12241 gagcagggca ttttgtgaaa atggttcaca acggtatcga atatggcgat atgcagttaa
    12301 tttgtgaagc ctaccaattc ttaaaagatg gtttaggttt aagctatgat gaaatgcacg
    12361 aaatctttaa agagtggaaa aacaccgaat tagacagcta tttggtggat attaccactg
    12421 atattcttgc ctacaaagac gaagacggcg agccattggt agagaaaatt ctcgacaccg
    12481 caggtcaaaa aggaacgggt aaatggactg gtattaacgc ccttgatttc ggcattccat
    12541 taacactgat taccgagtcg gtattcgccc gttgcgtatc tgcgtttaaa gatcaacgtg
    12601 ttgcggcttc aagattgttt aacaaagaaa ttggtaaagt tgaaggcgac aaaaaagtat
    12661 gggtagaagc ggtacgccgt gcgttacttg cttccaaaat catctcttat gcacaaggct
    12721 ttatgttgat tcgtgaggct tctgagcaat tcggttggga catcaactac ggcaataccg
    12781 ccctattatg gcgtgaaggt tgtattatcc gcagccgttt cttaggcaac attcgtgatg
    12841 cgtatgaagc caacccatat ttagtgttct taggctcaga cccatacttc aaagatattt
    12901 tggaaaactg cttggcagat tggcgtaaag tagtggcaaa atcggtggaa atcggtttac
    12961 ctgtaccttg tatggcgtca gccattacct tcttagatgg ctacacctcg gcacgtttac
    13021 cggcaaactt actccaagca caacgtgact actttggtgc tcatacttat gagcgtacag
    13081 acaaagctcg cggtgagttc ttccacacca actggacagg acgtggcggt aataccgcat
    13141 cgaccactta tgatgtgtaa ttaatctttt tgagccactt aattcgatat taagtggctt
    13201 ttttattgga tttttcttca aaatatcttg gagtgaatgt ttacaagttt gtataataat
    13261 ggagcgattt ttcatttata tttaaggaga acctatgctt accgatcaag atatttttaa
    13321 tcgctaccaa acaaaaaaat cagaatttga aaaacaggca gatatttccc ttattgggca
    13381 ttccctgttt gatatgtggg gcgatatgga aaacggcacg ccgaatttag caggaaaaac
    13441 agttgccaat ttgggcttat caggcaccag cacccgccaa tatttggatg tgattacccg
    13501 acaagagcga attcaacacg ttggcgataa tgtatttatt tttctaggcg ttaatgacat
    13561 tgtaaaagag ccggattact cgccaaaaca agtgttagag tggattggcg aaattgtgga
    13621 ttctcttcgc aaaattaatc caaatgccaa cttttttcta ttggaagcca caccggttaa
    13681 taatattacc accaccaata atgctgcaat aaaagagctc aatgcgtatt ttgaggcaaa
    13741 tattccatct gatttgactt atgtaaaaac gtgggaatat tttgctgaca aagaagggaa
    13801 tttagatcta actttatgcc acgatggatt acacttcacc caagcaggct atgaccgcct
    13861 agaggcgatt ttaaccaaac atttataatg aaaagcttca ataagcaagc ggtctgaatt
    13921 agcaaaaaat ttccaaatcc tgaccgcttg ttagttaatt acagtgcttc aatctcttga
    13981 tactgcacct gcaatttctc taatccactc aggtactctt gcattttttc acgctctttg
    14041 gcgatgactt gctctggggc tttggcgaca aaggcttcgt ttgaaagttt gccttcaatg
    14101 cgagccactt cacctttaag tttatccatc tctttggtga ggcgagctag ctcagcttct
    14161 ttgttgataa agcctgccat tgggatcaag atctcaccat ttgcgaccag tttcgctacc
    14221 gatagcggtg cattttcacc attttccagc actttcacgc tatcaagttt tgccatcgat
    14281 ttgagcaaca cttcgttagc gttgagaata gagacttcgt ccgcagagaa attacgagcg
    14341 attaaatcta aacctttgct tggtgcgatg ttgctttccg cacgaatgtt acgcaccgcc
    14401 acaatcactt ctttgataaa gttgatttga ctttcggcgg tttcatcaat ggcaagcggg
    14461 tcaaattgtg ggaatttttg caacataatg gtatcggctt caatacctac aaagcctttc
    14521 actttctgcc agatttcttc ggtgatgaac ggcattactg ggtggattaa acgcaggagt
    14581 ttttccaata cattcaccag cgtgcgactt gcgccacggc gttgtacatc tgtgcctttg
    14641 aagaaaatag gtttggtcag ctctaaatac cagtcgcaga attgatccca agtaaattcg
    14701 tagatcgcat ttgccactaa gtcgaaacgg tattggctga gtgcggtgcg gaaagtttcc
    14761 accgtgcggt tgaattggct ttcaatccaa cgatcggcaa ggctaaattc cacgtcgcct
    14821 tcgcttaaat ccaacttgtc attggtcagc acataacggc tcgcattcca cagtttgttg
    14881 cagaagttgc ggtagccttc taaacgtttc atatcccagt tgatgtctcg accgttgctg
    14941 gcaagggcgg tgagggtgaa acgcagagcg tctgtgccgt gtgccacaat cccttcggca
    15001 aattctttgc gggttgcctt agcgattttt tctgccagtt gtggctgcat catattacct
    15061 gtacgttttt cgagcaaatc gtcgagactg atgccgtcaa tcatatcaat cgggtctaac
    15121 acgttccctt tcgatttcga cattttctgc ccttgctcgt cacggatcaa gcctgttaca
    15181 tacacggttt tgaacggcac ttgcggtttg ccgttttcat ctttgatgaa gtgcatcgtg
    15241 aacataatca tacgagccac ccagaagaag atgatgtcaa aaccggtaat cagcacatcg
    15301 gtcgggtgga acattttcag ttctttggtt tgttctggcc agcctaacgt tgagaacgtc
    15361 catagaccag acgagaacca agtatccagt acgtcttcat cttgctttaa tggtaagtcc
    15421 gcaggtaagt tgtgtttcgc acgcacttcc gcttcatctc gtgctacata aacattgccc
    15481 tgctcgtcat accacgctgg aatgcggtgt ccccaccata attggcgaga gatacaccag
    15541 tcttgaatat cacgcatcca agagaaatac aggttttcgt actgtttcgg cacgaattgg
    15601 atttcgccgt cttccaccgc tttggtcgcg acttccgcca aaggtttgac agacacatac
    15661 cattggtcgg tcagcatcgg ctcaatcggc acgccaccac ggtcgccata cggcactttt
    15721 aagtcgtgtg gtttgatttg atctaacagc ccaagagctt caaaatctgc cacaattttc
    15781 ttacgcgcgg caaaacgctc taagccttga tagtcggcag gaattggggc ggtgtagtcg
    15841 gaaagcggtt taccgtctgt gccgataatt tcggcctctg cacgaatatc ggcatttaag
    15901 gtcatcacat tcaccatcgg caagccgtgg cgtttgccca cttcgtagtc gttgaaatcg
    15961 tgggcagggg tgatttttac cacgcccgta ccgaactcac gatccacata ctcatcggca
    16021 ataatcggga tttcacggtt ggcaagcggt aggattacgc ttttgccaat cagagcttga
    16081 taacgctcat cttcagggtg aaccgccacc gcagtatcgc ccaacatcgt ttcaggacgg
    16141 gtcgttgcca ccactaagta atccaagccg tctgcggttt ttgcaccatt agccagcgga
    16201 tagcggaaat gccacagcga gcctttgctt tctttgtttt ccacttccaa gtcagaaatc
    16261 gcagtatgca gtttcggatc ccagtttacg aggcgtttgc cacggtaaat caagccttct
    16321 tcgtgcaagc gaacgaacac ctcttttacc gcattggata agccttcgtc catcgtaaaa
    16381 cgctcacgat cccagtcaat cgagttgcct aagcgacgca tttgctggct gatcgtgccg
    16441 cccgaatagg ctttccaatc ccagattttg ttgataaagg cttcacgccc ataatcgtgg
    16501 cgggttttac cttcttccgc tgcgatttta cgctccacca ccatctgagt ggcaatccct
    16561 gcgtggtcag ttcctgtttg ccaaagggta ttgttgccct ccatacggtt aaaacgaatc
    16621 agcgtatcca tcaaggtttg ctggaaagcg tgccccatat gcaaactccc cgtcacattc
    16681 ggcggcggaa tagcgataca gtagctcggt gcattaatat cttcactcgg cttaaaatag
    16741 ccttgcgatt cccagtgttg gtagagcgct tgctctacag cggaagggtt aaaacggtct
    16801 tccattgtga attgttttgt cattggtttt gttttctctt gtttaataat tttttcacta
    16861 gcttaatctt ataaaaaaga tctttgccgt aaatgctttt ataggtaatt agttatttaa
    16921 attaaggtca actaaaagat taattgggaa ttttttgttc ctcttgcatt tttcttcgtt
    16981 tttcccataa ttgctttcgg ctatttaaac agctttgctc aatctcttta atatcatctt
    17041 ctatattgga tgaaaaattg attaatttga ttgtcggagg aaatataccg gttttatctt
    17101 cttgcgtagt taatgttagt gttcctagat tactgttaat ttctttaatt ttaaatgttg
    17161 atagctcggt atatccccca ctaacaagat aactcaattt caactctcta tcgaaaataa
    17221 gatttaataa tgttggctta gggctttcca atctaaaact ccaagttaga ggtattaact
    17281 cacacagagc tgttgaagtc atttccccta aaatcgaatt gtcatcttta ttaaccataa
    17341 attcaatgat aacatttggt tgctcttcag gtatgttcaa taatttatag tcgataatgt
    17401 aatttgtatt tgtagaccat aaaccatcca gttttttatt atataggtaa ttctcctcga
    17461 aatttttcca aataataggc atgtttgcga tgcgttctaa aatatcagtt gtgaagatac
    17521 tccatatggc agatataaga ataataggaa ttttgttatt ttttatgaac tgttttaagc
    17581 cattctcttt tttatgagta ccaataactt ttttagactt tttcctattc tgtttcatct
    17641 ttgtgttttt gttccaatat ccccgatggt gatcgtcttc gacgagagct tatttattta
    17701 agaacctatc agagataggc ataagcggtc tgtttcgaga agttttttgc aaagtttttc
    17761 tttaatccga cagcttgtca cccacacaca agccgtgtgg ggttacgcat agctgagcca
    17821 ctttgtggct ctaagttaca gctccaaagg agctgggatt gtcgagccta gcacggctcg
    17881 tgctaggtgg ttttaaaccc taattccact aattcatcac aaagctgatt acaccaattc
    17941 ggtattttgt ctgaaatttt tatcactttc ttatcagcaa tctgcaaaat caaattcggc
    18001 ttggtttctg aattatcata aatcagtgtt tcatcattga taaaaatcgc ttcaattaaa
    18061 ttttcacggc taatgtgata gcgttttcta atggtttctt catcaataaa atgtccgccg
    18121 gctttcactc ttgcttttac ccgtgcgatg ttaattttat agctatcgac accaatataa
    18181 tttaatcgag ttttgaaata tcctgctttg gcattttcca ttcgttttag aatagattta
    18241 cccgagaggg ttgattccat tgaaaatgca acctgatttt ttactgcaaa ctgaaatagt
    18301 tcgattgctt ttctgcccgc ctcaatatcg gccaatcttg gattgagtgg gttaatctgc
    18361 atcgcaatat tatcggaatc aatcacaatc tcgactttat cttgattgaa agaacgtaaa
    18421 gtagatttgc cggctccgtt tgtgccacag taaaaaattg ctaggttatt gtgcatattc
    18481 aatcactttt tccgtaccgt ccggataatg ctgaattaaa tccccatttt ctcggcgata
    18541 cgtcagcact tcgtgctttt tcttttcttc aaaccatgct gtaaagagaa tatccagttc
    18601 acgttgtttt ttcagtaatt cttcacgact tgtcatttta tgtcctctgt ttcagaatcg
    18661 ccaaatacct ttccaactca gctaattcat actgactaat caattcaacc aaactactaa
    18721 tatcttgttg atttttatgg aaatcatcaa aacattggta atattgggct cgattggtaa
    18781 atttaatatc aatcggtaaa tagccctgtt ttaataattc aaaattaatc agtaatcgcc
    18841 ctgtgagccc gtttccatca ataaaagggt gaatgctttc aaaggctaaa tgcagccaac
    18901 tgattgcctc tatgggatga agtgcggtca gtttttgttg atatttttca atcaataatt
    18961 gcatttcttc ggcaattaaa taaggggggg ggcattttct gcccctaaaa ttcgtactgg
    19021 aattttgcga taaacccctc ggctttccgc attgcccatt aataccagag aatgaatatc
    19081 tttaatcgct cgttcgctta atggttcttt attggcgact aattcataaa tatagttgaa
    19141 tgcatcctta aaaccgataa tatctaaatg ctcccgaatc ggtttttcgg caatggtcat
    19201 tccctctttt aaaatgagca ccgtttcacg caaagtaatg gtattgcctt caattgcatt
    19261 ggaattatag ctgctttcaa taataaactc ttcccgcagt cgttgaactt cgctttcaga
    19321 taatggacgg cgttgtgaaa gtgctgtttt taattgttcg attttagcta atttattcat
    19381 tctaacacca tatccaaatg cgcaatccca tcttccaaat acacttctga aaccgcttta
    19441 aacccaaaac tttcataaaa cccttgcagg taactttggg cttgggcgtg aatgggttga
    19501 gcaggaaaat gttcgccaca ataatccatc gctttttgta ccaattccct tgctaagcct
    19561 gagccacgat tttctttcac caccaacact ctacctatat gcacaccatc attggctgga
    19621 attaaacggc agtaagcggt cagatttttt gcattttttg taaagaaatg caccgcttgc
    19681 aggtctttat tatcgacttc ttggtaaggg cagttttgct caaccacaaa caccgctgta
    19741 cgtgcgtggt aaatctcaaa caactcttgg gtggagagtt catcaaagcg ttttgcgcgc
    19801 caagagaggt tttttagcat tgtatcgttt ccagttgcca accaagttgg cggtattgtt
    19861 tatagcggtc acgagcctgt gctttggcgg tttcttccac cggcacgaaa tcaataatct
    19921 gggtaaaact gccgataaat tcggggagtt gggtttggag tgaaatcaac aaatcccgac
    19981 gttgagcatt gcgtttacct ttccacgaaa tttcgatagg cgttgggtaa gtggtgattt
    20041 ctcccgataa attgtgcggc acgaacgaat ccggatctct tgcccaaagt gcttcgtcaa
    20101 tatttaacgc ttgttgctcg gtttcgcatg caatcagtac ccgtttacct aatcgccacg
    20161 cttgagccgc aagttcgcag gcttgcattt cagcagcgga aagctcggct gcatcggctt
    20221 ggcttaatag ataaaattgt acttgtttca cagaatgttc ccagaaattc aatcagatat
    20281 ttaaacttaa tattctagct gaaaatgagt aaaatataaa atctaagcgt ttgtttttgc
    20341 aaaaaattga gaaaaaatga ccacttgtgt tgcgttgcct tgaggaacta attagctttt
    20401 agacgttcta agagaacaat gcactatttc aatagttgga aattgtgtag aatacccact
    20461 tcatttagct attttataag gaacttacta tgggcttatt tgattttgtt ggcgacattg
    20521 gtcgtaaatt atttaataaa gaagaagatg cttcaaaagc ggttacagag catttggcgg
    20581 aagacaatcc gggcgttgaa aatgtaaacg taacggttga aaacggggta gcgaaaattt
    20641 caggcattgc ttcaaccgca gcagctgttg agaaagcggt attgatggcg ggtaatgtgg
    20701 ctggtatcac tgaggtaaat attgatgaag tgaccttgcc tgatgacgtg caacttgcaa
    20761 gtgatgatga gctttatgtt atccaaaaag gggatacgtt gtgggaaatc gccacaaaag
    20821 cttatggtaa cggtgcaaaa tataaagcga ttgtagaagc aaataaagaa gttattaaag
    20881 acgaaaataa aatcttccca gggcaaaaaa ttcgtatccc gaaaggttta taatcaaatt
    20941 gaaagagcta agctggtcga aagtttagct ctttttgtag gtggtgttag actgaaaatg
    21001 gatattgaat ggcagggtgg tattcataac cttcaacttt gaaatcatct aagctcaccc
    21061 aagtttctaa atcttctaag gattttatat caggattaat gattaattta ggtgcattga
    21121 gtggttctcg cttaagttga acatcacgca ttaattctag ttgatcttca taaatatgcg
    21181 cattgacaat tttatggaac gcttgtcctg ccttatgccc tgtaatttga gccattaaag
    21241 ctaaaaaggt atagcattga atcatattcc aatttaaccc aagcggtaca tctgccgaac
    21301 gctgagtact attcaggtaa agcgtgccat caagtagaga aaaatgatgg ctgtgtaaac
    21361 aaggacgtaa gcagcccata tggaaagcgc cggggtggta gaaggtataa atttcaccac
    21421 ggttatcaat tccttttttc aaatcgtcca caatttgtcg caataaatcg actgagccac
    21481 cgtctggttt cgggaaatta cgccctactg cgccgtaaac caagcccata tcatcttccc
    21541 cttttcgata gggattagca agccattgtg cattttcatt tgcattagcg tcccacgatt
    21601 ttgtgcctaa ttgacggaaa tcagcagcat tactatagcc tcgaatatag cctaaaagtt
    21661 cggcaatcgc agctttccaa taactacggc gagtggtaac taaaggaaat tctccttttt
    21721 ctacgtcata agttaagtca gcattaatga ctgtgaggca gtgtttgcct gtacgttcat
    21781 ttgcaaccca tttgccttcg ctaacgatgc ggttacataa gtctaaatac tgtttcatta
    21841 tttacctcat aaaaaatttt aggtaatttt gccatttatt cggtaaaata gctaaaactt
    21901 tatgacacaa cacaataagg agttatggat atgaaaggta taatgaaatc cattctggtt
    21961 ttttccaccg ctgttttttt agcagcttgt tcatcgaata aaagcggttg gacacgttta
    22021 aatgataatg atgttgatca gaaatcttat gctattgctt atggtgcaac ggctcagact
    22081 tatgcggata gagtaaatga aagctatgat atcaattcct ttatgaatgg ggtaaatgat
    22141 tggtacacta aaaaggttac attgccaatt gagcaaatta gagcaataac gattaatcga
    22201 atgttagacc ataatgtgta tgcttattat agtggtgtga tttatgccgc agatttgcag
    22261 gcaaatttca atcatttaga tcctaattgt tgggggcttg ttcaaccagc gagtatgacc
    22321 cagggcattc acgatgcgat gttagattta cagaagaaca aagttcgtgg agatgagtat
    22381 atcaaaaatg gggttgagca aatattgcac ctttgtgtaa aaacgattgc tgaagatgaa
    22441 aatgaatcgc aatctaaagg taaaaccaaa aagcataaat aagttaagct atgacaagcg
    22501 gtaaaatttt taaaaaattt taccgctttt ttataaccgt atgaaatgtt taatatttat
    22561 tctatgaaac ttaaaaaaac agcgttttgt ttattcaata ggcaaacact cgggattttt
    22621 caattttcag gaaaaagaat ttgacatctt tttaaattct agtaatatgg cgcccacaga
    22681 cacagtgagt ggtgagatgg ccgagcaggc tgaaggcgct cccctgctaa gggagtatag
    22741 ggttaaaaag ctctatcgag ggttcgaatc cctctctcac cgccatttac tttatcacgc
    22801 acccgtagct cagctggata gagtactcgg ctacgaaccg agcggtcaga ggttcgaatc
    22861 ctctcgggtg cgccatttta atttttactc tattcaaatt aaaatggttg ctgataaaat
    22921 taaataaact tacaattcaa atatacgcac ccgtagctca gctggataga gtactcggct
    22981 acgaaccgag cggtca
//
LOCUS       DANLVT010000029        22673 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.029, whole genome shotgun sequence.
ACCESSION   DANLVT010000029 DANLVT010000000
VERSION     DANLVT010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22673)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22673)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22673
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.029"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            263..1453
                     /gene="malE"
                     /locus_tag="PXC99_000967"
     CDS             263..1453
                     /gene="malE"
                     /locus_tag="PXC99_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005537801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose/maltodextrin ABC transporter
                     substrate-binding protein MalE"
                     /protein_id="HDL5417433.1"
                     /translation="MKNKCVKFTLATLATLVLSGTVMAKMTEGKLVIWINGDKGYNGL
                     AEVGKKFEKDTGVQVLVEHPDRLEEKFAQVASTGDGPDIMFWAHDRFGGYAQSGLLAE
                     VNVSKEFKDKFVDFAWDAETYNGKIIGYPVAIEAISLIYNKDLVKEAPKSWEEIIELD
                     KKLKKEGKNAIMWNLSEPYFTWPIAASNGAYAFKFANGKYDPKDIGVNNEGAVKALQF
                     VVDMVKNKHISADMDYAVAEASFNKGQSALTINGPWSWGNIDKSGIKYGVTLLPTLNG
                     QASKPFVGVLSAGVNSSSPNKDLAKEFLENYLLTDDGLDAVNKDKPLGAVALKSYQEK
                     LAADPRIAATMANAKNGEIMPNIPQMSSFWYAEKSAINNAVTGRQSVKEALDDAHSRI
                     QKQQ"
     gene            1572..3110
                     /gene="malF"
                     /locus_tag="PXC99_000968"
     CDS             1572..3110
                     /gene="malF"
                     /locus_tag="PXC99_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose ABC transporter permease MalF"
                     /protein_id="HDL5417434.1"
                     /translation="MLTQTQSKSTHWLKYLLAGLVLLLDFYLVVLMYSQGEYLFAILT
                     LIILTSGVYIFTNKNTYAWRYVYPGITGMAIFILFPLVATIAIAFTNYSGSNQLSFER
                     AVSVLTEQRYFAGDKYQFTLYPQADNKYQIALTNPTTEQTFVSEPISLATGTNVVVTE
                     QNRPTGEVAPLKVITQNRAALQSMKVVLPNNNELTMSSLRQFSEQKPRYQFDEENKIL
                     LNNETGKRYQANDETGFFQSIDENGHWQSETLEPGYTVTSGFNNFIKIFTDEGIQKPF
                     VQIFIWTVIFSLLTVVFTVILGMVLACLVQWEALKGKAVYRVLLILPYAVPSFISILI
                     FKGLFNQSFGEINMILNQLFGISPEWFNDPLLAKVMILIVNTWLGYPYMMILCMGLLK
                     AIPADLYEASAMDGASTWQNFSKITFPLLLKPLTPLMIASFAFNFNNFVLIQLLTNGR
                     PDMIGTTTPAGYTDLLVSYTYRIAFEGSGTQDFGLAAAIATIIFLLVGGLALLNIKAT
                     KMEL"
     gene            3163..4053
                     /gene="malG"
                     /locus_tag="PXC99_000969"
     CDS             3163..4053
                     /gene="malG"
                     /locus_tag="PXC99_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001252048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose ABC transporter permease MalG"
                     /protein_id="HDL5417435.1"
                     /translation="MAIVQSKSVRYRVWATHFILICFLALIIFPLLMVIGISLRPGNL
                     AIGDIIPSQISWEHWQAALGFDVTHADGTVTPPPFPVLRWLWNSIKVATITSIGIVTL
                     STTCAYAFARMKFKGKKTILQGMLIFQMFPAVLSLVALYALFDRLGQYVPFLGLNTHG
                     GVIFAYLGGIALHVWTIKGYFETIDGSLEEAASLDGATPWQAFRLILLPLSVPILAVV
                     FILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYLYPQNYLWGDFAAAAVLSAIPITL
                     VFLLAQRWLIGGLTAGGVKG"
     gene            4128..6185
                     /locus_tag="PXC99_000970"
     CDS             4128..6185
                     /locus_tag="PXC99_000970"
                     /EC_number="3.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HDL5417436.1"
                     /translation="MKNALPYLCLFYTSSLFAQSWQHSHFSDFNDDLEKHFFQSQVQL
                     EKGSYPLRFKFGEQCYQPQQAIKLNQSVALVPCINEAPQLRLFRQGNYLAQIDLRSGT
                     PTPTISVEQQLQHNEAMFQSCPNWDKKPIEIDVSSTFAEGESVSDFYSGNTAIVKNGK
                     VTLMPNENASGLILLEKSNTENTATFDWKNATVYFVLTDRFYNGDPTNDHSYHRQKDG
                     MQEIGTFHGGDLKGLTEKLDYLQQLGVNVLWISSPLEQMHGWVGGGDKGDFPHYGYHG
                     YYHLDWTKLDANMGTEDDLSRFVQQAHQRGIRVLFDVVMNHTGYATLADMQEFNFGGF
                     YLTPDEISRTLGEKWTHWKPKSGQNWHSFNDFIRFNDNQAWQNWWGKEWVRADIADYD
                     SPKFDDLKMSLAALPDLKTESEQAVKLPEFFANKNTNAKTLPNAKVRDYLIGWLSDWV
                     RKYGIDGFRVDTAKHVEKSTWLVLKQSAQQALNEWQKANPNAGFNDRFWMTGEAWGHG
                     VFKSDYYQNGFDAMINFDFQDQAKQGLNCFAHIEPIYAEMNRKLSDFNVLSYLSSHDT
                     RLFFHSDSEQNIEKHKTAANLLLLSPGAVQIYYGDESGRTFGATGSDLIQGTRSDMNW
                     QELQQDPQKQALHQHWQKLTQFRQRHPAIGAGVHQLIKNDSYFAFKRVLNEDKVMVVW
                     AGN"
     gene            complement(6299..9025)
                     /gene="malT"
                     /locus_tag="PXC99_000971"
     CDS             complement(6299..9025)
                     /gene="malT"
                     /locus_tag="PXC99_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MalT"
                     /protein_id="HDL5417437.1"
                     /translation="MLIPSKLVCSFRLQNSIPRKRLIQELDKSCSYPVVLINAPAGYG
                     KTTLVSQWIENKKNIGWYALDEGDNNSDRFATYFSAALHSAINEEIDVLLEENRKANL
                     LALFNQLLIKAAAFSEHFYLAIDDYHIIENDEIHEALKYWIKHQPSNMTLILISRSIP
                     PLSIASLRVQEQLLEIDINQLMFDHQESTAFFQARLGSELNQQDVIALCNEVEGWPTA
                     LQLISLFAKNKSHTLQVPLQDIAKRLAKSNHFHINEYLADEVLNKVDEETRLFILRCS
                     VLHSMNESLVQAVTGEQNSRTKLESLEKQGLFLQQMANSKWQSSDDSWWKFHPLFASF
                     LNLCCQNELYAELPQLHQKAANAWLQLGYVTEALHHAMQLSDTGLLLNILSKHAWTVF
                     HQGELKLLEESLNCLDYAHLTEHTNLVLLKAWLVQSQHRHIEVGGILADFSRALTENK
                     IELSKTANAEFNVLRAQVAINSGDENTALQLASEALNDLSENAYYAHIVATSIIGEAH
                     HCHGNLAEALAMLQKAERMARQHHTYHNILWSQLQQSEILLAQGFSQAAYEMLDKASE
                     FVKENHLQKVPMYEFLLRSKGKILWEWYNLDKAESMAVAGMNALSKFEDKLQCLTLLT
                     KISLARGNLDNTARLLGEVEQLEHSHSYHHDWIANADQVRIFYWQMTNDVSAVRNWLI
                     QNPSPVSDKNHFTQVQWRNIARSRILLEEYHEAKAILDNLIETAEKFSLISDLNRALI
                     VRNRLYFLQGEKELAQQDLIQALKLTRQTNFISAFVIEGDVMAQQIRHLLQLNVLDEL
                     VLHKAQFILRNINQFYRQKFAHFDENFVNQLLKNPKVPELLKISPLTQREWQVLGLIY
                     SGYSNEQISDELQVAATTIKTHIRNLYQKIGVTNRNEAISYTKELLMLMGYH"
     gene            9189..11558
                     /gene="malP"
                     /locus_tag="PXC99_000972"
     CDS             9189..11558
                     /gene="malP"
                     /locus_tag="PXC99_000972"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltodextrin phosphorylase"
                     /protein_id="HDL5417438.1"
                     /translation="MTFNSIVEKYCRYFDVTDPKHFTLQQWYQVVAEGSLELIYSQPA
                     TKPTESRHVNYLSMEFLIGRLTGNNLMNLGYYEQIRDYLKQYQVELVDVLEQERDPAL
                     GNGGLGRLAACFLDSMATVGQNATGYGLHYQYGLFKQSFKEGMQKEAADTWARDSYPW
                     HRFNPSKTRHIGFGGKIKHIQADQYEWQPKLTIQGKAFDLPIVGYKNNIIQPLRLWQA
                     DSDQSFDFDAFNEGKFLSADKTIVNAAALTQVLYPNDNHQAGQKLRLMQQYFHCACSV
                     ADILDRHISEGYSLEDLAKRQVIQLNDTHPTLAIPELMRVLLDEHQFTWEQAWDICSN
                     TFAYTNHTLLPEALEQWDQRLFKQLLPRHYQIVEKINDIFHDKVQAEFGDDAKIWEKL
                     AVLFDYRVRMANLCVVTCFRVNGVAEIHSDLLVTDLFPEYHKLFPTKFCNVTNGITPR
                     RWIRQANPQLSDLLDRTLKQDWTHNLELLKGVEQYADDTGFREEYQRIKRNNKVVLAN
                     EIHKTLGLNVNPNAIFDVQIKRFHEYKRQHLNLLNIIATYQSLKANPNQDYTPRLFLF
                     SGKAAPGYYLAKNIIHAINNVADIINNDKQVNDRLQVAFLPDYRVSLAEKIIPAADVS
                     EQISMAGKEASGTGNMKLALNGALTLGTLDGANVEIADMVGEENVFIFGHTVESVREL
                     LAKGYQPKAYYNQDPILKNAVDFLATGKASNGDKEAFKLMLDSLLERDPFLVFADFDS
                     YRQAQEKIGVAYLDQETWLRSAILNTARLGAFSSDRSIKDYQQRIWLNR"
     gene            11640..13718
                     /gene="malQ"
                     /locus_tag="PXC99_000973"
     CDS             11640..13718
                     /gene="malQ"
                     /locus_tag="PXC99_000973"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HDL5417439.1"
                     /translation="MKITAKQYYRAGIMPYFFDERGVKKTASEKIKHSLFKAFNGNTQ
                     ARETPIPTVNIFYQHQPCFLPFHLADKKHPLTGTWQLQLENSNQIISGKIKARGITLP
                     QDLPLGYHQLQLKTVDKTFNCTIIIAPERCYQPQAVIEQKRLWGTFLQLYTLKSAHNW
                     GIGDFGDLKDFIQQIAPYQADFIGLNPIHSLFPANPNSASPYSPSSRRWLNIAYIDIN
                     QLAEFQQSDEAQTWFHSAEIQQQLSELRTQDWLNYEQIIPLKLKGLRFAFAKFQQNMT
                     ACAAPAFIEFVQKGGESLQVQATFDALHQHLSAQFADQWGWDFWEKAYQDYHSAAVQQ
                     FRETHKTDIEFYLWLQFVADQQLAECDAICRQQNMRIGMYRDLAVGVSPNGAETWNDK
                     QLYCLNASVGAPPDVLGPQGQNWGLTPMNPHVLKQQAYRPFIELVRANMSHCGALRLD
                     HIMSLLRLWWIPKGDSAVNGAYIRYPVDDLIAILALESQRHQCLIIGEDLGTVPKEIV
                     SKLKNAGILSYKIFYFEFDEQGKSRDLQHYPYQAMTTLSTHDLPTINGYWRGYDFELG
                     EKFGVYPNSNILAILKQDRVNAKAKILQRLQEHNVEIAPEISEQLNSPVNTAFIHCLQ
                     TYVANVSSGLFGFQPEDWLGMTEPVNIPGTSTQYANWRRRLSVNLEEIFTDKDIQALL
                     KEVNLIRKNQ"
     gene            complement(13783..15444)
                     /locus_tag="PXC99_000974"
     CDS             complement(13783..15444)
                     /locus_tag="PXC99_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HDL5417440.1"
                     /translation="MSEIALTVSLLSLVAVLGLWIGHIKIRGVGLGIGGVLFGGLFVS
                     HFMAQFDVKLDAHTLHFIQEFGLILFVYSIGIQVGPGFFASLKHSGLKLNGFAVLIVL
                     ISGILVILIHKFFNVPLPVILGIFSGAVTNTPSLGAGQQVLAELSAESVTEIMGMSYA
                     IAYPFGIIGILLSMWLIRILFRINIEAEAEAFNKQQNRSKDQLSTLNVRLTNPNIHGL
                     TLKQIPDFNLHEVAYSRLKRGNELSIPRVDTILQIGDILHLVGEESSLRKMQIILGEA
                     VDVSVSTKGTIYRSERAVVTNEKVFGKQIRQLMLKGKYDVVISRLNRAGVELVPTGDM
                     TLQFGDVLNLVGRQADIEMVMTIIGNAHSKLQQVQMLPIFIGIGLGVLLGSVPIYLPG
                     FPVALKLGLAGGPLVVALILARIGSFSKLYWFMPPSANLALREIGIVLFLAVVGLKSG
                     GRFLETLLSSEGVEWICYGAIITFVPLMIAGLIARMYNKVNYLTICGLLAGSMTDPPA
                     LAFANEIKEGNGAAALSYATVYPLVMFLRIMLPQVLAIMLWVSGG"
     gene            15662..17038
                     /locus_tag="PXC99_000975"
     CDS             15662..17038
                     /locus_tag="PXC99_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HDL5417441.1"
                     /translation="MLSNEVFISIIVLLILSLLRINVVIALIISALTCGLIGNLGVEG
                     AGFTEALEKTIKSFTGGLGGGAETAMNYAVLGAFAVALSKSGVTDLLAYKVIKSFGHS
                     PSGRSVTWFKYIVLFVLVAFAMSSQNLIPIHIAFIPILIPPLLSVMNKLQIDRRAVAC
                     ALTFGLTATYMLIPAGFGQIFIESILVKNINQAGEPFQLVTTTAEMTKAMLIPVSGMI
                     LGLLFAFFVSYRKPRVYIENMPEPTADDIEARVANVKPFHIGISIVAIIATCSVQLAT
                     NSTIIGGLVGLVIFALGGVFRLKESNDVFQAGLRLMAMIGFVMIAASGFAGVVNSTGG
                     VPALVESLRDVISSKEMAALLMLVVGLFITMGIGSSFSTVPIITSIYVPLCISFGFSP
                     LATMAIVGVAAALGDAGSPASDSTLGPTSGLNADGKHDHIWDSVVPTFIHFNIPLLVF
                     GWIAAMTL"
     gene            17136..17939
                     /gene="xthA"
                     /locus_tag="PXC99_000976"
     CDS             17136..17939
                     /gene="xthA"
                     /locus_tag="PXC99_000976"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HDL5417442.1"
                     /translation="MKFISFNINGLRARPHQLEAIIEKHQPDVLGLQEIKVADEDFPY
                     DLVNHLGYHVFHHGQKGHYGVALLTKKEPIAVRKGFPTDVLDAQKRMIMADIETDFGV
                     LTVLNGYFPQGENRSHETKFPAKQKFYADLQNYLESELKPENPIIIMGDMNISPTDLD
                     IGIGEPNRKRWLRDGKCSFLPEEREWLDRLYSYGLVDTFRAGNPDVNDKFSWFDYRSK
                     GFDDNRGLRIDLILASKSLAERCVETGIDLDIRAMEKPSDHSPVWATFK"
     gene            18093..18677
                     /gene="lptC"
                     /locus_tag="PXC99_000977"
     CDS             18093..18677
                     /gene="lptC"
                     /locus_tag="PXC99_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HDL5417443.1"
                     /translation="MNKRLTVILLIIVAVLGGWYYSLQEKENTGLDQLIKKEGQPEYV
                     GNKMSTTVYDLKGNPQYFAQATEIKRYESTERTEFFKPFIELFAKESTQKQWKVSADY
                     AEITKEKMLNLKGNIKLVALDPASRLQQITTDTLTVDLNTQDIFTESTVKSIGSGFTT
                     TGVGLKGNLKQQVATLQKDVKSYIEPTIIQETKE"
     gene            18701..19207
                     /gene="lptA"
                     /locus_tag="PXC99_000978"
     CDS             18701..19207
                     /gene="lptA"
                     /locus_tag="PXC99_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide transport periplasmic protein
                     LptA"
                     /protein_id="HDL5417444.1"
                     /translation="MKLMFKSILVSVLLGSSFSAYALKGDTDQPINIDSGSQSLDMTN
                     NIVTFSDNVVITQGSIKVTAANVKITRQEGKKETIDATGSPVTFQQTLDNGKPVNGKG
                     NSVHYDLNSEFLTLIGNAELKQQGSFIKANKITYDVKKQQLKATSGGKTRVKTVLIPN
                     ELQDNKKK"
     gene            19219..19944
                     /gene="lptB"
                     /locus_tag="PXC99_000979"
     CDS             19219..19944
                     /gene="lptB"
                     /locus_tag="PXC99_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005727816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HDL5417445.1"
                     /translation="MSVLYAEHLAKSYKQRQVVKDVSLNVKSGEIVGLLGPNGAGKTT
                     TFYMVVGLVRHDHGTIRIDDQDISTLPMHDRAKQGIGYLPQEASIFRRLSVYDNLMSV
                     LQVRKNINDKQRKERAEELITEFHIEHIRNSLGQSLSGGERRRVEIARALAANPKFIL
                     LDEPFAGVDPISVIDIKKIIVNLKERGLGVLITDHNVRETLDVCERAYIVGSGEMIAS
                     GTPQQVLENPDVKRVYLGDQFKL"
     gene            19986..20498
                     /locus_tag="PXC99_000980"
     CDS             19986..20498
                     /locus_tag="PXC99_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL5417446.1"
                     /translation="MTKLTEFLSPENVRQGVLISSKKRALELVGKIVAESINQTEQQS
                     EALCPIECFGNLFKREKLGTTGLNQGIALPHAKLPACGDIELTKPIAVFLQLEEAIDY
                     EAQDNKEVDLIYAMMFPENSCEQYKSCLPAIAQKLTDKSLLKQLRAAESAEDIWQILV
                     YADNHLKDEE"
     gene            20511..21374
                     /gene="rapZ"
                     /locus_tag="PXC99_000981"
     CDS             20511..21374
                     /gene="rapZ"
                     /locus_tag="PXC99_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HDL5417447.1"
                     /translation="MELIIISGRSGSGKSVALRALEDAGYYCVDNIPLPLIPTLTYYL
                     TQENRSAVISLDIRNLPNTPNAIEELLTQLEPLNAKLIFLDCERNTLIRRYSDSRRIH
                     PLSTQDDLSLEGALDLEQKLLEPLVQNANYIIDTSHLSSHELAENLRQILQGSTEKEL
                     KIIFQSFSFKYGLPADSDYVFDVRFLPNPHWNPELRPMTGLEQPVIDFLERQTEVHNF
                     IYQTRNYLEMWLPMLEQNNRSYLTIAIGCTGGKHRSIFIAEQLAKYFQAKGKNVQVRH
                     KSLEKHHKKTS"
     gene            21457..22641
                     /locus_tag="PXC99_000982"
     CDS             21457..22641
                     /locus_tag="PXC99_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HDL5417448.1"
                     /translation="MKSADIVIVGGGMVGLALAGLLKDVDCQIKIIEKNTPKFDADTI
                     YHRVSAINASSQKILEQIGAFQHIPAQRLSPYTEMKVWEKDSFANIHFDNNDNEIKQL
                     GLSQLGFILENAVIQHALWQQVSQQANVEYIIAAPQTLGVSENGAFLTLDNGEMLSAK
                     LVVGADGANSWVRNQMKMPLTSKDYQHTALVCNVKTTEKHGKTARQIFAEDSIFAFLP
                     MADEHLCSIVWSLPPNKANELKNASEAEFNKALTIAFDNQLGLCEVQSLREIYPLAAR
                     FCRDFAQPRIALIGDAAHTIHPLAGLGVNLGFADARTLANEIQKQLVNNQDIGEYRHL
                     RQFERERKAQAMKLLATMEGLKQLFDGNHPLKKLFRGIGLSLTNQLPFVKKQLIQQAI
                     YL"
BASE COUNT         6994 a         4669 c         4443 g         6567 t
ORIGIN      
        1 ttagagccat agccataatt atttaaaaaa cgccaattca gaaaaattaa ataaattttg
       61 tgatcaacct ctcattttta atgcctattt ttgtgaagca gatcacaaaa tgataaaaaa
      121 tgttacttag atcatacttt tagcttgggg ggcgtagagc aaagggtgat ctcaaataga
      181 ttgtatagcc cataatttgc cataatttaa taaatgggtt gtttcatatc cgtttctttt
      241 atttaacttc aaggagtttt ttatgaaaaa caaatgtgtc aaattcacct tagctactct
      301 tgctacctta gttctttcag gaacagtaat ggcaaaaatg acggaaggta aactcgttat
      361 ctggattaac ggtgataaag ggtacaatgg gcttgccgaa gtcggtaaga aatttgaaaa
      421 agataccggt gttcaagttt tagttgaaca cccggataga cttgaagaaa aatttgcaca
      481 ggttgcctca actggtgacg gtccggatat tatgttctgg gctcacgacc gctttggtgg
      541 ttatgcacaa tccggtttat tggctgaagt gaatgtaagc aaagaattta aagataaatt
      601 tgtcgatttt gcttgggatg ctgaaactta caacggcaaa attatcggtt atccggttgc
      661 gattgaagcg atttcattaa tttataataa agatttagtg aaagaagcac caaaatcttg
      721 ggaagaaatt attgagttag ataaaaaact caaaaaagag ggcaaaaatg ccattatgtg
      781 gaacttatcc gagccctatt tcacgtggcc gattgcggct tcaaacggag cttatgcatt
      841 caaatttgct aacggcaaat acgatccaaa agatattggt gtgaacaatg aaggggcagt
      901 aaaagcacta caatttgtag tcgatatggt gaaaaataaa catattagtg cggatatgga
      961 ctatgccgtt gccgaagcct cctttaataa aggacaaagt gccttaacca tcaatggtcc
     1021 ttggtcttgg ggcaatattg ataaaagcgg tattaaatat ggtgtaactt tactcccaac
     1081 attaaacggt caagcttcta aaccattcgt aggggtgtta agtgccggtg taaacagctc
     1141 aagcccaaat aaagatttag ccaaagaatt cttagagaat tatttactca ccgacgacgg
     1201 tttagatgca gtcaataaag ataaaccttt aggtgcggtg gcgttaaaat cttaccaaga
     1261 gaaattagcg gctgatcctc gtattgctgc aacgatggca aatgcgaaaa acggtgaaat
     1321 tatgccaaat attccgcaaa tgtcttcttt ctggtatgcc gaaaaatctg ctatcaataa
     1381 tgcagtgacc ggtcgtcaat cggtgaaaga agcattagat gatgcacatt cacgcattca
     1441 aaaacaacaa taattcttca tcattctgag tgggttatta tgacccactc tatttttaga
     1501 ttcaccctaa atacaataaa agtacagtaa aagtaccgta acaaaatgca gtaaaaattc
     1561 gaggtgctgt tatgctaact caaactcaat ccaaatccac tcattggctc aaatatctct
     1621 tagccggatt agtcttgctc cttgacttct atcttgttgt cttaatgtac tcacaaggtg
     1681 aatatctttt tgctatttta acgctgatta ttctaacttc cggtgtctat atttttacca
     1741 ataaaaatac ctatgcttgg cggtatgttt accctggcat taccggaatg gcaattttta
     1801 ttttgtttcc gctggttgcg actattgcaa ttgcgtttac caactatagt ggttctaatc
     1861 aattatcctt tgaacgagcg gtatccgtct taactgaaca acgctatttt gccggagata
     1921 aatatcaatt caccctttat ccgcaagcag ataataaata tcaaattgca ttaaccaatc
     1981 cgacgacaga gcaaactttt gtgtcagagc cgatttcatt ggctaccgga acgaatgtgg
     2041 ttgtaaccga gcaaaacaga ccaactggcg aagtcgctcc ccttaaagtg attacgcaaa
     2101 atcgggccgc acttcaatca atgaaagtgg ttttaccgaa taataatgaa ctgacaatga
     2161 gctcattacg tcaattctcc gagcaaaaac cacgctatca atttgatgaa gaaaataaaa
     2221 tattactcaa taatgagact ggcaaacgtt atcaagcaaa tgacgaaacc ggtttcttcc
     2281 aatcgattga tgaaaacggt cattggcaaa gcgaaacact tgaaccaggt tatactgtca
     2341 catcaggctt taataacttc attaaaattt ttaccgatga aggtattcaa aaaccttttg
     2401 tccaaatatt tatttggacg gtgatcttct ctttattaac cgttgtcttt accgttattc
     2461 tcggtatggt tcttgcctgt ttggtacaat gggaggcatt aaaaggtaaa gcagtctatc
     2521 gtgtcttatt gattttacct tatgccgtac catcatttat ttcgattctg atttttaaag
     2581 gactatttaa ccaaagtttt ggtgagatca atatgatttt aaaccaacta ttcggcatca
     2641 gccctgaatg gtttaacgat ccgctccttg ccaaagtgat gatcttaatt gtcaatacgt
     2701 ggttaggtta tccttatatg atgattttat gtatggggtt actcaaagct attccggctg
     2761 atttatatga agcctccgca atggacggtg cttccacttg gcaaaacttc agtaaaatca
     2821 ctttcccatt actgttaaaa ccacttactc cgttaatgat tgcttcgttt gcatttaact
     2881 ttaataactt tgtattaatt caactattaa caaacggtcg cccggatatg attggaacaa
     2941 ccactccagc cggttatacc gatttattag tcagctacac ctatcgtatt gcctttgaag
     3001 gaagtggtac gcaagatttc ggcttagcag ccgccatcgc aaccattatt ttcttattag
     3061 tcggtggctt ggcactctta aatatcaaag caaccaaaat ggaattataa aagcgggagg
     3121 gatttaacaa tcccgacccc aaactaactt taggagttat atatggcaat tgttcaatct
     3181 aaatctgtgc gttatcgggt atgggcaacc catttcatct taatctgttt ccttgcctta
     3241 attattttcc ctttattaat ggtgattggc atttcgttac gaccgggaaa tctggctatc
     3301 ggtgatatta ttccaagcca aatttcgtgg gaacattggc aagccgctct tggttttgat
     3361 gttacacacg ccgatggtac agtcacaccg ccgccattcc cggtgctacg ctggttatgg
     3421 aactccatca aagtggcaac aattacctct atcggcattg taaccttatc tacgacctgt
     3481 gcttatgcat ttgcccgaat gaaatttaaa ggcaaaaaaa ccattctaca aggtatgctg
     3541 attttccaaa tgttcccggc agtgctttcc ttagttgcct tatatgcgtt gtttgatcgt
     3601 cttgggcagt atgtaccgtt tcttggttta aacacacacg gtggtgttat ttttgcctac
     3661 ttaggcggaa ttgccttaca cgtttggaca atcaaaggct actttgaaac gattgatggt
     3721 tcattggaag aagccgcttc ccttgatggt gcaaccccgt ggcaagcgtt ccgattaatc
     3781 ttattaccgc tttcagtgcc gattttggcg gtagttttca ttctttcatt tattgccgcc
     3841 attaccgaag taccggttgc ctcactccta ttgcgtgatg taaacagcta caccctagcc
     3901 gttggtatgc aacaatacct ctatccgcaa aactatttat ggggtgactt cgcagcagcg
     3961 gcggtcttat ccgcaattcc gattacgctg gtcttcttat tggcacaacg ctggttaatc
     4021 ggtggtttaa ctgccggcgg cgtgaaaggc tagtttgcaa aaaattctct aaaaacgacc
     4081 gcttgtcgag ctgatactgc ggtcgtcaat ctttattagg gctgtctatg aaaaatgcgt
     4141 taccttatct ctgcttattc tatacctcaa gcctttttgc ccaatcttgg caacattccc
     4201 atttttctga ttttaacgat gatctcgaaa aacatttttt tcaatcccaa gttcaattgg
     4261 aaaaagggag ctatccgctt aggttcaaat ttggcgaaca atgttatcaa ccccaacaag
     4321 cgataaaatt aaatcaatcg gttgcgttag tcccttgtat aaatgaagct ccacaactgc
     4381 ggttgtttcg tcaaggcaac tatctggcac aaattgatct gcgaagcggc actccgacac
     4441 ccacaatcag cgtagaacag cagctacagc acaatgaagc gatgtttcaa agttgcccga
     4501 attgggataa aaaaccgatt gaaattgatg tttcttccac ttttgccgaa ggcgaatcgg
     4561 ttagcgattt ttattcaggc aacaccgcta tcgttaaaaa cggcaaagtc accttaatgc
     4621 ccaatgaaaa cgcaagcggt ctgattttgc tggaaaaaag caataccgaa aatacggcaa
     4681 cgtttgattg gaaaaatgcc accgtctatt ttgtgctgac cgaccgcttt tataacggcg
     4741 atccgaccaa tgaccacagc taccaccgcc aaaaagacgg aatgcaagaa atcggcacct
     4801 ttcacggtgg tgatttaaaa ggattaaccg aaaagctcga ttacctacaa caacttgggg
     4861 taaacgtatt gtggattagc tctccgttag aacaaatgca cggctgggtt ggcggcggtg
     4921 ataaggggga ttttccgcat tatggctatc acggttacta tcatttagat tggacgaaat
     4981 tagatgccaa tatgggtact gaagacgatt taagtcgctt tgttcaacaa gcccaccagc
     5041 gtggtattcg ggtgctattt gatgtggtga tgaaccatac cggctacgcg acgcttgccg
     5101 atatgcagga gtttaacttt ggcggatttt acttaacacc ggacgaaatt agccgcacat
     5161 taggcgaaaa atggacacac tggaagccga aatcaggaca aaattggcac agtttcaatg
     5221 atttcattcg ctttaacgat aatcaggctt ggcaaaattg gtggggaaaa gaatgggtta
     5281 gagctgatat tgccgattac gacagcccta aatttgatga tttaaaaatg tcgctcgctg
     5341 cccttcctga tctaaaaacc gagagcgaac aagcggtcaa attacctgaa ttttttgcaa
     5401 ataaaaatac caatgccaaa acattaccaa acgccaaagt gcgtgattat ttaattggtt
     5461 ggttatccga ttgggtcaga aaatatggca ttgacggttt tcgggttgat accgccaaac
     5521 acgttgaaaa atccacgtgg ctggtattaa aacaatcggc acaacaagcc ttaaacgaat
     5581 ggcaaaaagc caatccgaac gccggtttta acgatcgctt ttggatgaca ggagaagcgt
     5641 ggggacacgg cgtgttcaaa agtgactatt atcaaaacgg ttttgatgca atgatcaatt
     5701 tcgattttca agatcaggct aaacaagggt taaattgctt tgcccatatt gagccgattt
     5761 atgccgaaat gaatcgcaaa ttaagcgact tcaatgtgtt gagctattta tcttcacacg
     5821 atactcgatt atttttccat tcggatagtg aacaaaatat cgaaaaacac aaaaccgccg
     5881 caaatttgct gttgctttca cccggtgcag tgcaaatcta ttatggtgat gaaagtgggc
     5941 ggacatttgg tgcgaccggt tcagacctga tacaaggcac ccggtcggat atgaattggc
     6001 aagagttgca gcaagatcct cagaaacagg cattgcatca acattggcaa aaattgacac
     6061 aattccgcca acgccatccg gctattggcg caggtgtcca tcaactcatc aaaaatgata
     6121 gctactttgc atttaagcgt gtgttgaatg aagataaagt gatggtggtt tgggccggaa
     6181 attaaatcta ctttagcttc aagttttctc tcttctgggg aaaacttgaa gccggttcgg
     6241 ggaaacaagt tgcaaaaaat tactaaaaat agaccgcttg ttccccatga gcttgtgatc
     6301 aatgataccc catcaacatc agcagttctt tcgtatagct gattgcttcg ttacgattcg
     6361 tcacaccgat tttctgataa agatttcgga tatgggtttt aatcgtggtt gcagccactt
     6421 gcaattcatc tgaaatttgt tcattgctat atccggagta aatcaaaccc aatacttgcc
     6481 attcccgctg agtgagcgga ctaattttta agagttccgg cactttcgga tttttcaata
     6541 attgattcac aaagttttca tcaaaatggg caaatttttg gcgataaaat tgattgatgt
     6601 tgcgtaaaat aaactgtgct ttgtgcaata ccagttcatc tagcacatta agttgcaata
     6661 aatggcggat ctgctgtgcc attacatccc cttcaatcac aaacgcactg ataaaattcg
     6721 tttggcgggt gagttttagt gcctgaatta aatcttgctg agccaattct ttctcgcctt
     6781 gtaaaaaata aagccggtta cgaacaatta atgcgcgatt taaatcgcta atcagagaaa
     6841 atttttcagc cgtttcaatt aaattatcta aaatggcttt cgcctcgtga tattcctcaa
     6901 gcaagattcg agaccgtgca atatttcgcc attgcacttg ggtaaaatga tttttatctg
     6961 aaaccggtga ggggttttga attaaccagt tcctcaccgc agaaacgtca ttggtcatct
     7021 gccaataaaa tatacgtacc tgatcggcgt tggcaatcca atcgtggtga taagaatgag
     7081 aatgttctaa ttgttcgacc tcgcctaata atcgggcagt gttatccaaa ttgcctcgag
     7141 ccaacgagat cttcgtgagt aaagttaagc attgtaactt atcttcaaat ttagataagg
     7201 cattcattcc ggcaactgcc attgattcag ctttatctaa gttataccat tcccataaaa
     7261 tcttgccttt agaacgtagc aaaaattcat acatcggcac tttttgtaga tggttttctt
     7321 tcacaaactc gcttgcttta tctaacattt cataggctgc ttgtgaaaac ccttgggcaa
     7381 gcaaaatttc agattgttga agctgtgacc acaaaatatt gtggtaagta tgatgctgac
     7441 gtgccatacg ctctgctttt tgcaacattg ctaatgcttc tgccagattg ccgtggcaat
     7501 gatgagcttc gccaataata gacgttgcaa caatatgagc ataataggca ttttctgaaa
     7561 gatcgtttaa cgcttcagac gctaattgaa gtgcggtatt ctcatcaccg gaattgatag
     7621 caacttgtgc ccgtagcaca ttaaattccg cattggcagt tttgctcaat tcaattttat
     7681 tttcagttaa tgcacgagaa aaatccgcta aaataccacc tacttcaata tggcggtgct
     7741 ggctttgtac caaccaggct ttgagtaaca ccaaattagt atgttcggtt aaatgggcgt
     7801 aatctaagca atttaagctc tcttccaata atttgagttc tccttgatga aacaccgtcc
     7861 aagcgtgttt gctcaaaata ttgagtagta atccggtatc cgataactgc attgcgtgat
     7921 gtaaggcttc tgtaacatag cctaattgta accacgcatt cgccgccttt tgatgcagtt
     7981 gcggtaattc agcatataac tcattttggc aacataaatt taaaaaggaa gcaaaaagcg
     8041 gatggaattt ccaccagcta tcatcactac tctgccactt actgtttgcc atttgttgta
     8101 aaaacaaacc ttgcttttcg agagactcta atttggtgcg actgttttgc tcccctgtaa
     8161 cagcctgcac taaagactca ttcattgaat gcaaaaccga acaacgcaaa ataaacaaac
     8221 gagtctcttc atcgacttta ttaagcactt catcggctaa atattcgtta atatgaaaat
     8281 ggtttgattt ggctaaacgt ttggcaatat cttgcagtgg tacttgtagc gtgtgtgatt
     8341 tattttttgc aaaaaggcta attagctgaa gggctgtggg ccacccttca acttcgttac
     8401 acagtgcgat aacatcttgc tgatttaact ccgaacctaa tcttgcttga aaaaaagcgg
     8461 tactttcttg gtgatcaaac attaactggt taatatcaat ttccaataat tgttcttgca
     8521 ctcttaaact ggcaatactt aacgggggaa ttgatcgaga aatcaagata agcgtcatat
     8581 tagacggttg atgtttaatc caatatttta atgcttcgtg aatttcatca ttttcaataa
     8641 tatgataatc atcaatagca agataaaaat gctctgaaaa tgccgcggct ttaatcaata
     8701 attgattaaa taaagctaat aaattagctt tacgattttc ctctaacaat acgtctattt
     8761 cttcattgat tgctgaatgc aatgccgcac taaaataagt ggcaaaacga tctgaattat
     8821 tatcgccttc atctaacgca taccagccga tattcttttt attttcaatc cattgggaaa
     8881 ccagagtggt tttgccataa cctgccggtg catttatcaa tacgaccgga taactgcaag
     8941 atttgtctaa ttcttgaatt aaacgttttc gaggaatgct gttttgtaat cgaaaagaac
     9001 aaacaagttt tgatggtatt aacataataa attcaatttt ctctcataac aaaataggga
     9061 tgatatatcc accatttgtg ttctcactac ttccttataa tcataccata caagatgatt
     9121 attgggatga tttgatttta tttggatttt acataatagc gacattcatc tttaaccggg
     9181 ggtttcctat gacatttaat tctattgtag aaaaatactg tcgctacttt gatgtgacag
     9241 atccaaaaca ctttacctta cagcagtggt atcaagttgt tgctgaaggt tcccttgagc
     9301 taatttatag ccagcctgca accaaaccga cagaatcacg ccacgtgaac tacctctcaa
     9361 tggagttctt aatcggtcgg ttaaccggca ataatttaat gaatttaggt tattacgaac
     9421 aaattcgtga ctatcttaaa caatatcaag ttgaattagt agatgtttta gaacaagagc
     9481 gtgatccggc attgggtaat ggcggattag gtcgtcttgc tgcctgcttt ttagattcga
     9541 tggcaactgt cggacaaaat gcaaccggct atgggcttca ttatcaatat ggtctgttta
     9601 aacaaagctt caaagaggga atgcagaaag aagcagcgga tacttgggct cgtgacagct
     9661 acccgtggca tcgttttaat ccgtctaaaa cccgccatat cgggtttggt ggaaaaatca
     9721 aacatatcca agccgatcaa tatgaatggc agcctaaatt gaccattcaa ggcaaagcct
     9781 ttgacttgcc gattgtaggt tataaaaaca acatcattca accattacgt ttatggcaag
     9841 cagatagtga ccaatctttt gattttgatg cctttaatga gggtaaattt ttaagtgccg
     9901 ataaaacgat tgtcaatgca gccgcactaa ctcaagtgct gtatccaaac gacaaccatc
     9961 aagccggaca aaaattacgc ttaatgcagc aatacttcca ttgtgcctgc tcggttgccg
    10021 atattttaga tcgtcacatt agcgaaggtt attcgttaga agatttagca aaacgccaag
    10081 ttattcaact caatgatacc catccaacgc tcgctatacc tgaattgatg cgtgtactgt
    10141 tagatgaaca tcaattcact tgggagcagg cttgggatat ttgcagcaat acctttgctt
    10201 acactaacca taccttatta cctgaagcac ttgaacaatg ggatcaacgc ctatttaagc
    10261 agctattacc tcgccattat caaattgtgg aaaaaatcaa tgatattttc cacgacaaag
    10321 tacaggcaga atttggtgat gatgcaaaaa tttgggaaaa attagccgtg ctatttgatt
    10381 accgtgtgcg tatggcaaac ctctgcgttg tcacctgctt ccgtgtaaac ggcgttgcgg
    10441 aaattcactc cgatctctta gtgaccgatc tattcccgga ataccacaaa ttattcccaa
    10501 caaaattctg caatgttact aacggcatca cacctcgccg ctggattcga caagctaatc
    10561 cacaattaag tgatttattg gatcgtacct taaaacaaga ttggacacac aatctggaat
    10621 tattaaaagg cgttgaacaa tatgcggatg acaccggttt ccgtgaagaa tatcaacgca
    10681 ttaaacgcaa taacaaagtg gttttagcca atgaaatcca taaaacatta gggttaaatg
    10741 tcaatcctaa tgcgattttt gatgtgcaaa ttaagcgttt ccacgaatat aaacgccaac
    10801 atttgaattt gttaaacatt attgcgacct atcaatcgct aaaagctaac ccgaaccaag
    10861 actacacacc acgtctattc ctattctcgg gcaaagctgc accgggttat tatttagcaa
    10921 aaaatattat tcacgctatt aataatgtgg cagatattat taataacgac aagcaggtaa
    10981 atgatcgact acaagtggca ttcttaccgg attatcgagt cagtcttgcg gaaaaaatta
    11041 ttccagcagc tgatgtatca gaacagattt caatggcagg taaagaagcc tccggtaccg
    11101 gtaatatgaa attggcactc aacggcgcat taaccttagg tacgctagac ggtgccaatg
    11161 ttgaaattgc tgatatggtc ggtgaggaga atgtctttat cttcggtcac accgtagaaa
    11221 gcgtgaggga attattagca aaaggctacc aaccgaaagc ctactataac caagatccga
    11281 ttctgaaaaa tgcggttgat ttcttagcca caggaaaagc ctctaacgga gataaagagg
    11341 cattcaagct gatgttagat agcctgttgg aacgagatcc tttcttagtc tttgccgact
    11401 ttgatagcta tcgccaagca caagagaaaa ttggtgtagc ctatttagat caagaaactt
    11461 ggctgcgtag tgcaatttta aatactgctc gtttgggtgc atttagctca gaccgctcaa
    11521 ttaaagatta tcaacaacgt atttggttga atagataata aattcgggcg acttctacaa
    11581 taaaggaagt cgcctatttt ctgctgtatt tcatatgtat ttatatatgg agagaaatga
    11641 tgaaaataac tgccaaacaa tattatcggg ctggaattat gccctatttt ttcgatgagc
    11701 gtggtgtaaa aaaaacagca tctgaaaaaa taaaacattc gttattcaaa gcctttaacg
    11761 gcaatactca agcaagagaa acacctatcc ctacggtcaa cattttttac cagcaccaac
    11821 cctgtttttt accttttcat ttagcggata aaaaacatcc gttaaccggt acttggcagc
    11881 tacaactaga aaattcaaac caaattattt ccggcaaaat taaagcaagg ggaattacat
    11941 tacctcaaga tttgccctta ggttatcacc aattacagct aaaaacggta gataaaacct
    12001 ttaattgcac cattattatc gctccggaac gctgctacca accacaagcc gtcattgaac
    12061 aaaaaagatt gtggggaacc ttcctacaac tatacacctt aaaatcagcc cacaactggg
    12121 ggattggcga ttttggcgat ttaaaagact tcattcaaca gattgcccct taccaagcag
    12181 attttatcgg cttgaacccg attcactcac tttttccggc aaacccgaat tctgccagcc
    12241 catacagtcc atcctctcgc cgatggctga atattgctta cattgatatc aatcagctag
    12301 cggaatttca acaaagtgat gaagcacaaa cttggtttca ttctgctgaa atccaacaac
    12361 aattatcaga attacgcact caggattggt tgaattacga gcaaatcatt ccgttgaaat
    12421 tgaaagggct acgctttgct ttcgcaaaat ttcagcaaaa tatgaccgct tgcgctgccc
    12481 ctgcttttat cgaatttgta caaaaaggtg gtgaaagctt acaagttcaa gccacatttg
    12541 atgcccttca tcagcatcta tcggcacaat ttgccgacca atggggctgg gatttctggg
    12601 agaaagccta ccaagactac cactccgcag ccgtgcagca atttagagaa acgcataaaa
    12661 ccgacataga attttacctt tggttacaat tcgttgccga tcaacagcta gcagaatgtg
    12721 atgctatctg ccgtcagcaa aatatgcgta ttggtatgta tcgcgatctc gccgttggcg
    12781 tcagcccgaa tggtgcagaa acgtggaatg acaaacaact ttattgctta aatgcctctg
    12841 tcggcgctcc gcctgatgta ttaggtccgc aaggacaaaa ctggggctta accccaatga
    12901 atccgcatgt attaaagcaa caagcctacc gtccgtttat tgagttagtc agagctaata
    12961 tgagtcattg cggtgcatta cgccttgacc atattatgtc tttactccgt ttatggtgga
    13021 tccccaaagg cgatagtgcg gttaatggtg cttatattcg ttatccagtt gatgatttaa
    13081 tcgcaatttt ggcacttgaa agccaacgcc accaatgcct aattatcggt gaagatttag
    13141 gtactgtgcc aaaagaaatt gtgagcaagc tcaaaaatgc ggggatttta tcttacaaaa
    13201 ttttctattt tgaatttgat gaacaaggga agagtcgaga cttacagcat tacccttacc
    13261 aagcaatgac cacattaagc acccacgatt taccgactat caatggttat tggcgtggct
    13321 atgattttga attaggcgaa aaattcggcg tctatcctaa ttcgaatatt ttggcaatcc
    13381 ttaagcaaga tcgagtcaat gccaaagcca aaatcttaca acgcttacaa gaacataacg
    13441 tagagatcgc acctgaaatt agcgagcaac ttaattctcc ggtgaatacc gcatttattc
    13501 actgtttaca aacctatgtt gcaaatgtaa gcagcggatt attcggcttc caacccgaag
    13561 actggttggg tatgactgag ccggttaaca ttccgggaac cagtacacaa tatgcaaact
    13621 ggcgacgtcg gcttagtgtt aacctcgagg agatcttcac agataaagat attcaagcct
    13681 tattaaaaga agttaattta atccgtaaaa atcaataaaa gttagataag aaaaaaggcg
    13741 actttccgtc gccttttggg cttatatgct tgatgtctat ctttatccac ctgaaaccca
    13801 caacataatc gctagcactt gaggtagcat aatacgcaaa aacattacta gtgggtaaac
    13861 agttgcatag gataacgctg cagcgccatt tccctcttta atttcattgg caaaagcaag
    13921 cgctggagga tcagtcattg agccggcaag taatccacaa atcgttaaat agtttacttt
    13981 gttatacatt ctggcaatca atcctgctat catcaatgga acaaaagtaa taatcgcccc
    14041 atagcatatc cactcaacgc cctcactgct taatagcgtt tcgagaaatc taccgccaga
    14101 ttttaaacca actaccgcta aaaacagtac aataccgatt tcacgcaatg caagattggc
    14161 acttggtggc ataaaccagt agagtttact gaaactacca attcttgcaa gaataagagc
    14221 aaccaccagt ggtccaccag ccaagcccag ctttaacgca acagggaaac ccggtaaata
    14281 aatcggtaca gaaccaagta atactcccaa accgatcccg ataaatattg gcaacatttg
    14341 gacttgttgc aactttgagt gcgcattgcc gataatcgtc attaccattt caatatcagc
    14401 ttgccgccct actaaattga gaacatcacc aaattgtaac gtcatatcac ctgttggtac
    14461 taattctaca ccggctcgat ttaaacgaga aatgacaaca tcgtatttgc ctttaagcat
    14521 tagctgacga atttgtttcc cgaagacttt ttcattcgtc actacagcac gttcagaacg
    14581 gtaaatcgtg cctttggttg agacagatac atctactgcc tcacctaaaa taatctgcat
    14641 ttttcgtaat gaggattctt cacctactaa gtgtaaaata tctcctatct gtagaatcgt
    14701 atctacacgt ggaatagaaa gctcattccc ccgttttaag cgtgaataag ctacttcgtg
    14761 caaattaaaa tcaggaattt gtttcaacgt taaaccgtga atatttggat tagtcagacg
    14821 gacatttaag gtactaagtt gatctttact tctattttgc tgtttgttaa aagcctctgc
    14881 ttccgcctca atattgattc gaaataaaat ccgaatcagc cacattgaaa gtagaattcc
    14941 gataatgccg aacgggtaag caatcgcata actcattccc ataatttcag ttacactctc
    15001 agcgcttaac tcagccaata cctgttgacc tgctcctaaa gaaggggtat tggttacagc
    15061 cccggagaaa atgcctaaaa tcacaggcaa aggaacattg aagaatttat gaataagaat
    15121 aactaaaata ccgctaatca gtacaatcag taccgcaaaa ccattgagtt ttaagccaga
    15181 atgttttagt gaggcaaaga atccaggtcc tacttgaatt ccaattgaat aaacaaataa
    15241 aatcagcccg aactcttgaa taaaatgaag cgtatgggca tcgagcttca catcgaattg
    15301 cgccataaaa tgggagacaa acagcccacc aaataacact ccccctatac ctagccccac
    15361 gcctctgatt ttaatatggc caatccataa gcctagaacg gccactaaag ataataaact
    15421 gacagtaagt gcaatttcgc tcattacagc ctctctttaa tatgaaatac ctcaaaaatg
    15481 gtatccaatt ctaccaaatc tcaaaaacga aaaatgagat ctatgtcaaa aaaataaaat
    15541 attgatagta ttactccaag atgaacttca aaaaagttcc tgaatttaaa aaaaattctc
    15601 gacaatactt ttttttacag taaattaaac aattatttaa ataacctaag gatcaaacac
    15661 aatgttatca aacgaagtct ttatttcgat tatcgtgctg ttaatcctaa gcttgcttag
    15721 aattaatgta gtaatcgcac ttattatttc tgcccttact tgcggtctaa tcggtaatct
    15781 tggtgtagaa ggggctggat ttaccgaagc attggaaaaa acaataaaaa gttttactgg
    15841 tggtttaggt gggggtgcgg aaactgctat gaactatgcc gttcttggtg cgtttgccgt
    15901 agctctatca aaatcaggcg tgaccgattt attagcctat aaagtgatca aatcctttgg
    15961 tcacagcccg tcaggtcgct ccgttacttg gtttaaatac attgtattat ttgtgttagt
    16021 ggcatttgca atgtcatctc aaaacctaat tccaattcat attgccttta ttccgatttt
    16081 aattccaccg ctattaagcg taatgaataa attgcaaatt gaccgccgtg cggtagcttg
    16141 tgctttaacc tttggtttaa ccgccactta tatgttaatt ccggcaggtt tcggtcagat
    16201 ctttattgaa agcatcttag ttaaaaatat caaccaagca ggtgaaccgt tccaattagt
    16261 gactaccaca gcggaaatga ccaaagcgat gttaattcct gtttccggta tgattttagg
    16321 cttactgttt gcattctttg tgtcataccg taaaccgcgt gtgtatattg aaaatatgcc
    16381 tgaaccaacc gcagatgata ttgaagcccg tgttgcaaac gttaagccct tccatatcgg
    16441 cattagtatt gtggcgatta tcgcgacctg ttcggtgcaa ttagcaacaa attcgactat
    16501 tatcggcggc ttagtcggtc tggttatttt cgccttaggc ggtgtattta gactgaaaga
    16561 gagtaacgat gtcttccaag ctggcttacg tttaatggcg atgattggct ttgtgatgat
    16621 tgccgcctcc ggttttgccg gcgtggtcaa ttcaacaggc ggtgtgccgg cattggtaga
    16681 aagcctgcgt gatgtgattt catcaaaaga aatggcagca ttgctaatgt tagtcgttgg
    16741 cttatttatt acgatgggta tcggctcttc attctcgact gtgccgatca ttacctcaat
    16801 ttatgtgccg ctttgtatct catttggctt ctcgccactg gcgacaatgg cgattgtcgg
    16861 tgttgctgct gcactcggtg atgcaggttc tccggcatca gattccacac ttggtccaac
    16921 ctccggcttg aatgctgacg gtaaacacga ccacatttgg gattctgttg taccaacttt
    16981 tatccacttt aacattccat tattagtgtt cggctggatt gcagcaatga cactttaagc
    17041 tataatatgc aaaatttttg ctaaaaatga ccgcttgtag ccattacaag cggtctattt
    17101 tcttctttat tttgcaaacc acattaggat caccaatgaa atttatctct tttaatatca
    17161 acggattacg agccagacca catcagctcg aagcgattat cgaaaaacac cagcccgatg
    17221 tactcggctt acaagaaatc aaagttgccg atgaagattt tccttacgat ttagtcaatc
    17281 acttaggcta ccacgttttc caccacgggc agaaaggtca ttacggcgtg gcattactga
    17341 ctaaaaaaga gcctatagcg gtgcgtaaag gcttcccgac agatgtactt gatgctcaaa
    17401 aacgaatgat tatggcggat atcgagaccg atttcggcgt gctaaccgta ttaaacggct
    17461 atttcccaca gggggaaaat cgcagccacg aaaccaaatt cccggcaaaa caaaaattct
    17521 atgctgattt gcagaactac ttggaaagcg aattaaagcc ggaaaatccg attattatta
    17581 tgggcgatat gaacatcagc ccgactgatt tggatatcgg catcggcgag ccaaaccgca
    17641 aacgctggct gcgtgacggt aaatgttcat tcttacccga agagcgtgaa tggctagatc
    17701 gcttatacag ctacggcttg gttgatactt tccgtgcagg caacccagac gtgaacgata
    17761 agttctcttg gtttgactac cgttcaaaag gttttgatga taatcgtggc ttgcgtattg
    17821 atttaattct tgcttcaaaa tcacttgctg agcgttgcgt ggaaacaggc attgatttag
    17881 acattcgagc aatggaaaaa ccgtctgacc actcccctgt ttgggcaacc tttaaataaa
    17941 gttgcaaaaa aatctgagtt ttcaaccgct tgtcagtttt tagccctaca agcggttatt
    18001 ttttctcact tttttgcact ttttacgctg tactatatcc ctattcaaat ctgtgctaca
    18061 atcaaacact atttttagat tatttttgga ttatgaacaa acgtttaacc gttattttac
    18121 tgattattgt tgccgtactt ggtggctggt attacagctt acaagagaaa gagaatacgg
    18181 ggcttgatca gcttattaaa aaggaaggac agcctgaata tgtggggaat aaaatgtcca
    18241 ccacggtcta tgatctaaaa ggaaacccac aatatttcgc tcaagctact gaaattaaac
    18301 gctatgagtc tactgagcgt actgagtttt ttaaaccttt tattgagctt tttgccaaag
    18361 agtcgacgca aaaacagtgg aaagtcagtg ccgattatgc agaaattacc aaagaaaaaa
    18421 tgttaaattt aaaaggtaat atcaaacttg ttgcattaga tcctgcatca cgtttgcaac
    18481 aaatcactac cgatacgtta actgttgatt taaatacaca ggatattttt accgaaagta
    18541 cggtcaaatc gataggttcc ggttttacta caacgggggt tggattaaaa ggtaacttaa
    18601 aacaacaagt tgcgactttg caaaaagatg taaaatctta cattgaaccg accattattc
    18661 aagaaactaa agaataattt gcttggaaca aggaataaca atgaaattaa tgtttaaatc
    18721 tattttagtg agcgtgttac tgggtagcag cttttccgct tatgctctaa aaggcgatac
    18781 cgatcagccg attaatattg attcaggtag ccaatcgtta gatatgacta acaatatcgt
    18841 gacctttagc gataatgtcg ttatcactca agggtcgatt aaagtgaccg cagcaaacgt
    18901 caaaattacc cgtcaagaag gtaaaaaaga aactattgac gctacaggct cacctgtaac
    18961 attccaacaa accttagata acggtaaacc ggtaaacggt aaaggcaaca gcgttcatta
    19021 tgatttaaac tctgaatttt taacgctgat tggcaatgcg gaactcaaac aacaaggtag
    19081 ctttattaaa gccaataaaa ttacctatga tgtgaaaaaa caacaactta aagctaccag
    19141 tggcggtaaa acccgagtga aaaccgtgct aattccaaat gaacttcaag ataacaagaa
    19201 aaaataaggt taaatgatat gtctgtgctt tatgccgaac atttagcaaa aagctataaa
    19261 caacgccaag tggtaaaaga cgtcagcctg aatgtcaaat caggtgaaat cgtgggcttg
    19321 ctcggtccga acggcgcagg taaaaccacc actttctata tggttgtggg tttggttcgc
    19381 cacgaccacg gcacaattcg tattgacgac caagatatca gcacactacc aatgcacgac
    19441 agagcaaaac aagggattgg ctatctaccg caagaagcat ctattttccg ccgtttaagt
    19501 gtgtacgata acttaatgtc ggtattacaa gtgcgtaaaa atatcaatga taaacagcgt
    19561 aaagagcgtg ccgaagagct gattacagaa ttccatattg agcatattcg caatagttta
    19621 ggtcaatcac tttcaggtgg tgaacgccgc cgtgtggaaa ttgcccgagc attagcagcg
    19681 aacccgaaat ttattctgtt agatgaacct tttgctgggg ttgacccaat ctcggtaatt
    19741 gatattaaaa aaattatcgt caatttaaaa gagcgtggtt taggggtatt gattaccgac
    19801 cataacgtac gtgaaactct agatgtatgt gaaagagcct acattgtcgg tagcggcgaa
    19861 atgattgcca gcggcacacc acagcaagtg cttgaaaacc ctgatgtaaa acgtgtttat
    19921 ttaggcgatc aattcaaact ctaaaaaatc ccctctttgg ggatttcatc tttagatgaa
    19981 aaattatgac aaaactaacc gaatttctaa gccctgaaaa tgttcgccaa ggtgtactga
    20041 tttcaagtaa aaaacgagcg ttagaactcg tgggtaaaat cgtggctgaa tcaatcaacc
    20101 aaaccgaaca gcaatctgaa gcactctgcc ctattgaatg ctttggcaat ttatttaaac
    20161 gtgaaaagtt aggcacaacc ggcttaaatc aaggcattgc acttcctcat gcaaaattgc
    20221 ccgcttgcgg tgatattgag ctgactaaac cgattgcggt ctttttacaa ctggaagaag
    20281 cgattgacta cgaagcccaa gacaacaaag aagtggattt aatttatgca atgatgtttc
    20341 cggaaaatag ctgcgaacag tataaaagtt gcctacctgc aattgcacag aaacttaccg
    20401 ataaatcgtt attaaaacag ctccgagcag ctgaatccgc agaagatatt tggcaaattt
    20461 tggtgtatgc tgataatcac ctaaaagatg aagaataata ctgaggaaat atggaattaa
    20521 tcattataag cggacgctca ggctctggta aatcggtagc attaagagca ttagaagatg
    20581 caggttatta ctgcgtggat aatatccctt tacctttaat tccaacctta acctactacc
    20641 ttactcaaga aaatcgttcg gcagtcatca gcttagatat tcgtaattta ccgaatacgc
    20701 ctaatgcgat tgaagaattg cttacccagc ttgagccttt aaatgctaag ctgatttttt
    20761 tagattgcga acgcaatacc ttaatccgcc gttatagcga ttcccgccga atccacccgc
    20821 tttccaccca agacgatctc tcgttagaag gtgcattgga tttggaacaa aaattgcttg
    20881 agcctttggt gcaaaatgca aattatatta ttgacaccag tcatctttct tcgcacgaat
    20941 tagcggaaaa tcttcgccaa atactgcaag gctcaaccga aaaagagctt aaaattattt
    21001 tccaatcatt cagttttaaa tacggcttac ctgccgattc cgattacgtt tttgatgttc
    21061 gctttttacc gaacccacat tggaatccgg agcttcgccc aatgacaggc ttagagcaac
    21121 cggtgattga tttcttagaa cgccaaaccg aagtgcataa ttttatttac caaacccgca
    21181 attatttaga aatgtggctg ccgatgttgg aacaaaataa ccgtagctac ctaactattg
    21241 cgattggttg cactggtgga aaacatcgtt ccatatttat tgccgagcaa ctggcaaaat
    21301 atttccaagc aaaaggcaaa aatgtgcaag ttcggcataa aagtttggaa aaacaccata
    21361 aaaaaacatc ttaaataagt aggggctggt cctgtgccag ccctcatttc aactatttta
    21421 gggcgggcac agggcaccgc ccctacattt gattttatga aatccgcaga tattgttatt
    21481 gttggcggcg gtatggttgg gctggctctt gccggactgc tcaaagatgt cgattgccaa
    21541 attaaaatta ttgagaaaaa cacgcccaaa tttgatgccg atacgattta ccaccgtgta
    21601 agtgcgatta atgcttcaag ccaaaaaata ctggaacaga ttggtgcttt tcaacacatt
    21661 ccggctcaac gcctttctcc ttacaccgaa atgaaagtgt gggaaaaaga cagctttgct
    21721 aatatccatt ttgataataa tgataatgaa atcaagcaat taggactttc acaacttggc
    21781 tttattttgg aaaatgcggt gattcaacac gcattgtggc aacaggtttc tcaacaagct
    21841 aatgtagaat atattatcgc cgccccccaa actctgggcg tgagcgaaaa cggggcattt
    21901 ttaaccttag ataacggcga aatgctgtct gctaaattgg ttgtcggggc agacggtgca
    21961 aattcgtggg tgcgtaacca gatgaaaatg ccgcttacca gtaaagatta tcaacatacc
    22021 gccttagtct gtaatgtcaa aacaaccgaa aagcacggca aaaccgctcg tcaaatcttt
    22081 gctgaagata gcatttttgc ttttctgcca atggcagatg agcatctctg ctcgattgtt
    22141 tggtcgctgc caccaaacaa agccaatgaa ttaaaaaatg caagcgaagc cgaatttaat
    22201 aaagccttaa cgattgcctt cgataatcag cttggcttat gtgaagtgca aagtttgcgt
    22261 gaaatttacc cgcttgcagc acgcttctgc cgtgactttg cccaacctcg tattgcgttg
    22321 attggtgatg ccgctcatac cattcaccca ttggcgggac ttggtgtcaa tttaggcttt
    22381 gccgatgcca gaacgctggc aaacgaaatc caaaaacagt tggtaaacaa ccaagatatt
    22441 ggtgaatacc gccatttacg ccaatttgaa cgtgagcgta aagcccaagc gatgaaatta
    22501 ttagccacaa tggaaggatt aaaacagcta tttgacggca atcacccgct taaaaaatta
    22561 ttcagaggaa ttggtttaag cctaaccaac cagctgcctt ttgtgaaaaa gcagcttatt
    22621 cagcaagcta tttacttata aaatgtaaat tttttcgaaa taacgtaaag atg
//
LOCUS       DANLVT010000030        21539 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.030, whole genome shotgun sequence.
ACCESSION   DANLVT010000030 DANLVT010000000
VERSION     DANLVT010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 21539)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21539)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21539
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.030"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(55..130)
                     /locus_tag="PXC99_000983"
     tRNA            complement(55..130)
                     /locus_tag="PXC99_000983"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(95..97),aa:Asn,seq:gtt)
     gene            complement(246..995)
                     /gene="moeB"
                     /locus_tag="PXC99_000984"
     CDS             complement(246..995)
                     /gene="moeB"
                     /locus_tag="PXC99_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HDL5417449.1"
                     /translation="MELTDHEMLRYNRQIILKSVDFDGQEKLKASRVLIVGLGGLGCA
                     ASQYLASAGVGHLTLVDFDLVSLSNLQRQILHTDATIGQPKVESAKARLAAINPNIQI
                     ETINQRCSDEQLAKLIANVDLVLDCTDNVTVRNQLNLQCFKQKRPLVSGSAIRFEGQV
                     SVFCYQEQEPCYECLSRLFGDATLSCVEAGVIAPIVGIIGSIQALEAIKVLLNIGRTL
                     SGKLLMIDGLHFSVREMALPKQNNCPVCTSY"
     gene            complement(1094..2323)
                     /gene="moeA"
                     /locus_tag="PXC99_000985"
     CDS             complement(1094..2323)
                     /gene="moeA"
                     /locus_tag="PXC99_000985"
                     /EC_number="2.10.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HDL5417450.1"
                     /translation="MALLALSDALDNMLARLSTPKLVEQLPLNECANRVLAEDIFSPI
                     NVPNFDNSAMDGYAVRISDLAQNLTLNVAGKAFAGNPFNGEIKAGECVRIMTGALVPK
                     GVDAVVMQEETTLNSDGSVTFNHIPKLGSNIRRIGEDVKQGALVLKKGSLLNVASLPL
                     LASLGIASVPVFVKLKVAILSTGDELTSVGEPLSEGKIYDTNRFAVRLMLEKLNCEIL
                     DFGILPDDPILFEQTFRQAQQQADVLITSGGVSVGEADFTKDVLEKLGEIGFWKIAMK
                     PGKPFAFGKLEQAWFFGLPGNPVSALVTFYQLAQPALAKLSGLSTDKIAKLTQNLTAC
                     SAGKLKKAVGRQDFQRGYYYANEKGELEVRAVGTQGSHIFSAFNESNCFIVLEAERGN
                     VDAGEKVTIQPFNSLMY"
     gene            complement(2345..2962)
                     /locus_tag="PXC99_000986"
     CDS             complement(2345..2962)
                     /locus_tag="PXC99_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006719828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HDL5417451.1"
                     /translation="MFDSLAVQFVVLWAVIDPIGSVPVYLAKTIGLPIEARRKIALNA
                     VLIAAGILIFFLIGGQVLLESMQIPLPAFQAAGGLVLLLFALTMIFGESKPEQEMRIS
                     SNLNELAVYPLAVPSIASPGAMMAIVLLTDNHRFHIGDQIITAGIMLLVLFITYLLLL
                     AANRIQHLIGNAGAAIISRVMGLILAAIAVNNLLIGVRDFFVQIS"
     gene            complement(3030..4241)
                     /locus_tag="PXC99_000987"
     CDS             complement(3030..4241)
                     /locus_tag="PXC99_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDL5417452.1"
                     /translation="MISRQMQSLLKRLVAQFPAVLVTGARQVGKSTLLQHIGEGYQYI
                     TFDDPMLLELAKQESRLFFLNHQGKLILDEVQYVPEIFALLKLEIDKKQQNGLFLLSG
                     SQAFELMQNVSETLAGRIAILKLQGLSLREILGVKFDQPFLPTTDYLLAREQELKSPE
                     NIWQLIHKGDMPRLYAQEVDWEIYYRSYVATYIERDVRQLTNIASTTDFTRFMVSIAS
                     RSGELLNYSNIAQEVGVSNETIKRWVAILQTSGIIYLLQPYHNNHLKRAIKTPKVYFL
                     DTGLMAYLTKWLTPETIAQGAKSWQFFETFVVSQIIKSFHNQGIEPPIYFYRDTNQKE
                     IDLIIEYDRTLYPIEIKVTASPTKKMAKSFDLLNSVSSEWKLGQGAIINQYPTKLYLS
                     ENLVALPVSYL"
     gene            4438..6369
                     /locus_tag="PXC99_000988"
     CDS             4438..6369
                     /locus_tag="PXC99_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5417453.1"
                     /translation="MIFFTDLILKRGHSVLIDNSSVTIHTGQKVGLVGKNGCGKSSLF
                     ALLKNELQPEGGDVSLPKNWAISWVNQETPALAISALDYVIQGDREYTHLMAELDIAN
                     EKNDGNRIAIIHTQLDTIDAWTIQSRAATLLNGLGFSTEQLQLPVKSFSGGWRMRLNL
                     AQALICRSDLLLLDEPTNHLDLDAVIWLERWLSNYRGTLLLISHDRDFLDPIIDRVIH
                     IEHQKLNEYTGNYTSFEIQRATKIAQQNAAYQQQQRKVAHLQSFIDRFKAKATKAKQA
                     QSRIKALEKMELIAPAYADSPFEFEFRPPLALPSPLLMMEKVSAGYAEKTVLESVKLN
                     LVPGSRIGLLGRNGAGKSTLIKLLAGELPPQNGSIQLAKGVQLGYFAQHQVDTLRFDE
                     SPLWHLQKLAPEKTEQELRNYLGGFDFKGDKVVQAVKSFSGGEKARLVLALIVWQRPN
                     LLLLDEPTNHLDLEMRQALVDALTYYEGSLVVVSHDRHLLRSTVNEFYLVHDRKVEKF
                     KGDLDDYQKWLNEQNALANEPKSVLAKDSANSTACSSTNENSAAQRKEQKRLEAERRQ
                     QTAPLRKKITQLEKELEKATEKLNKLEAMLTESDIYEAENKAKLTETLAKQLEAKRLV
                     EEIEMQWLEAQEEFETMLR"
     gene            6648..6905
                     /locus_tag="PXC99_000989"
     CDS             6648..6905
                     /locus_tag="PXC99_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5417454.1"
                     /translation="MKNLRLSIHSSEHIWLRELFLKRRLELGLTQRTLGEKMGVLYSF
                     IGKVETGDRRLDIFEFIAYCKGLDLDPLSVLQEIEQQFPHK"
     gene            complement(6952..7572)
                     /locus_tag="PXC99_000990"
     CDS             complement(6952..7572)
                     /locus_tag="PXC99_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HDL5417455.1"
                     /translation="MKLWYSTTSPFARKALAVIKHHQLDDKVEMLRVTKAMDPNSPHN
                     QDNPLGRIPALQRNCGRWLFGSLLISEYLDQKGNNTPLLPKEGKPRWAVLALHNLADG
                     IMENTMPTLLQERMARPENEWWVSRHEQLMERNIRSFRQLEEALQEFGTELNLGTLTA
                     VALIDWWAFRLDKIGYDLAKNYPNLTAWAEEMNNKYAILAETKPSM"
     gene            complement(7574..8227)
                     /locus_tag="PXC99_000991"
     CDS             complement(7574..8227)
                     /locus_tag="PXC99_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01621 family pseudouridine synthase"
                     /protein_id="HDL5417456.1"
                     /translation="MTPTLPICYQHRDFIIINKPEGLSVHKDEAEIGLTELVARQLNV
                     KQVWLVHRLDKITSGLLILALNKEAAARFYHLFEQHKIYKTYWALSDKKPKKKQGRIV
                     GDMQKSRNGAWKLCHSKENPAVTQFISHSVEDSLRHFILQPKTGKTHQLRVAMKSLGS
                     PILGDKLYSGSQADRVYLHAYQLDFEYENEKISVQALPTSGHFWQKICKSNHIKHGE"
     gene            8276..8935
                     /locus_tag="PXC99_000992"
     CDS             8276..8935
                     /locus_tag="PXC99_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HDL5417457.1"
                     /translation="MAVTIYLVRHGRTVWNLEGRLQGSGDSALVEEGIIGAKKTGIAL
                     KHIPFTAAYSSMQKRAQDTANYILAENERSNIPHFHHKGLNEFDFGSWEGMKSVDLQE
                     NDEYWVMKRTPAEYLAKANGGERFEQLYQRVTQAFNQIAELHQNDGKVLIVSHGMTLT
                     LLTAVLKGIAWQDFRNEEKHSFVFNTAITKVEVENGKVTVLEFNNTDHLDNVPTSQYK
                     R"
     gene            complement(8972..10018)
                     /locus_tag="PXC99_000993"
     CDS             complement(8972..10018)
                     /locus_tag="PXC99_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01620 family protein"
                     /protein_id="HDL5417458.1"
                     /translation="MSKQIFNEEELKTTEHFEPKQEFDLENAIIEEEEKAVEAELIIE
                     ESLKPSRFWIRVLLATLALFGVAVIAQSIQWLIDTFQQREWIYFAFSIVFFIVSLLGV
                     GAIISEWRKLVYLRNHQKNQQMSNQLLLEQLPSNDGEQAVKFCENIANQLNHLPSIAQ
                     AEQLWKSELNEAYNAKEVLYLFSENVLKPIDKQVKQMISRNAAENAVIVAVSPLAIVD
                     VLLMAARNIALVNKITKAYGMELGYISRLKLFKMVLKNMVFAGATEIATDVGMDFFSQ
                     NLTAKLSLRAAQGIGVGLLTARLGIKAMEFCRPVAFQANEKPRISAIRQELLTSVKNT
                     VFAKTETKEKVFSD"
     gene            complement(10018..10971)
                     /gene="dusC"
                     /locus_tag="PXC99_000994"
     CDS             complement(10018..10971)
                     /gene="dusC"
                     /locus_tag="PXC99_000994"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(16) synthase DusC"
                     /protein_id="HDL5417459.1"
                     /translation="MNPIPNVILAPMQGVLDPFVRNLLTSVNDYDLCISEFVRVVDQR
                     LPKKTFYRLAPELYQGGLTDSGTPVRVQLLGQHPQWLAENAALAIELGSHGVDLNCGC
                     PSKTVNGSNGGASLLKDPELIYRATKAMREAVPSDKIVSVKVRLGWDSVSQCFEIADA
                     VEQGGANEITVHGRTKVDGYRAERINWQAIGEIQQRLSIPVIANGEIWDFESAKNCQK
                     ITACKALMMGRGALNTPNLSKVVKYNVPKMAWNEVLQLLFKYVQMENQFDTGFYHVAR
                     IKQWLRYLDKEYPQAVELFDILKTEHGYDGLKAHIEKAVEE"
     gene            complement(11049..11675)
                     /locus_tag="PXC99_000995"
     CDS             complement(11049..11675)
                     /locus_tag="PXC99_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2238 domain-containing protein"
                     /protein_id="HDL5417460.1"
                     /translation="MDSRSHIIPLFLAIVITVIAVWSGLNPTDRAVWYAEVIPIFIVF
                     ALLIITYPKFQFSGLAYFLMSLWLIMHLIGAKYTFANVPFEWANQFLTPILGEDRNHF
                     DRVAHYIIGFYSFPMAEWLLRKRKCGMGVAFFFSLFFIMSVAAAYEIIEWQYAVIEGG
                     NAGVEFLGSQGDIWDAQKDMLADTLGALTALMIYLIARPDLRIHDRHF"
     gene            complement(11675..12532)
                     /gene="djlA"
                     /locus_tag="PXC99_000996"
     CDS             complement(11675..12532)
                     /gene="djlA"
                     /locus_tag="PXC99_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone DjlA"
                     /protein_id="HDL5417461.1"
                     /translation="MQFIGKIVGFFLGYQLFHGLFGGILGAFIGHLADKKLYELGSVR
                     SSLFGKNLTRQSLFTQTTFAVLGHIAKAKGRVTEADIELARALMARLKLDSAAQQLAQ
                     NAFTLGKEPDFPLRQVIQEFREACGARTDLLRFFVEVQMQAALQDGQLDVNEQQILFT
                     IAETMGMSRFQFEQMIAMIMAAQQFRNGGYYQQNGSYHQQSQGGYQGSYQQPAQPSIE
                     AAYTVLGVTAQDDQNTVKRAYRKLMNEHHPDKLAAKGLPDEMMELAKEKAQQIQAAYD
                     LICKVKEWK"
     gene            complement(12580..13290)
                     /locus_tag="PXC99_000997"
     CDS             complement(12580..13290)
                     /locus_tag="PXC99_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5417462.1"
                     /translation="MWKNRQLFFGYAENRLLLLSRSITGLLGILCGVYIIDHLVLSDV
                     DMIGKLTSFILIILSAIFLKERASLLQWILCLIAFIGALFIIKPAVDIRFMPYLVGVI
                     GSVFAAIAYLCLRLLAKTKKVESPNTIVFFFSAFSTLILLPFVAIDYVVLTNLQTIYL
                     VLAGVTSAVGQFCVTTAYKYAAAKDISIYSYASVLFSAILGLLFFEQYPDMLSWLGYA
                     IIFVSSWLMFVLTKKQSK"
     gene            complement(13305..13457)
                     /locus_tag="PXC99_000998"
     CDS             complement(13305..13457)
                     /locus_tag="PXC99_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417463.1"
                     /translation="MNFWNSLSPLFKAIFCVLLSALSFAIMAAFLRLSGDVPIAQKAI
                     FRNAQH"
     gene            complement(13526..14011)
                     /locus_tag="PXC99_000999"
     CDS             complement(13526..14011)
                     /locus_tag="PXC99_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HDL5417464.1"
                     /translation="MKKFAKVLMVAVPAFALAACSSSSDDAAANAAANAAANAAANAA
                     GEFGGLTAEQLKAQYNTVYFGFDSYAVEGEYRQLLDAHAQLLAKTQGNVTIAGHADER
                     GTPEYNIALGQRRADAVKGYLAAKGANNTSTVSYGEEKPAVLGHSEADYAKNRRAVLE
                     Y"
     gene            complement(14038..15324)
                     /gene="tolB"
                     /locus_tag="PXC99_001000"
     CDS             complement(14038..15324)
                     /gene="tolB"
                     /locus_tag="PXC99_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HDL5417465.1"
                     /translation="MKLFSRISGVIGIFSALLTTQVVADSDVRISIDEGVSMAQPIAV
                     VPFKASGVPADVAQIISDDLRNSGKFTPLERSQMPAQPGSAAEVVADQWSAIGIDNIV
                     VGQVSSTGGGYNVAYQLIDTLGTSGTAGGVIAQGSFIVPAAQIRQGAHTVSDEVFEKL
                     TQIRGAFRTKIAYVVQRGVSSYELRVSDYDGFNAFTITTSKEPLMSPEWSPDGSRLAY
                     VTFENKKAQVVVHDIRSGARRVVAALKGHNGAPSFSPDGSRIAFASNQDGELNIYVVG
                     SGGGTPSKLTANAGNNTEPSWSPDGSTIYFTSDRAGSPQVYRMSSSGGGASPMGGSGS
                     YNAKVSSDGKNLIMIAGDRVVKRDLASGGTEVLSSTFLDESPSISPNGIMVIYSSTKG
                     TSKVLQLVSADGRFKANLPGAGGHYKFPAWSPYLTK"
     gene            complement(15340..16563)
                     /gene="tolA"
                     /locus_tag="PXC99_001001"
     CDS             complement(15340..16563)
                     /gene="tolA"
                     /locus_tag="PXC99_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein TolA"
                     /protein_id="HDL5417466.1"
                     /translation="MKSQQDRLELAVIVSILLHILLIGLLLLGSLFTKTELAAAGGSG
                     GDSDSFEAVMVDTGQVAAEYGQLLAEKKGSKASKPKVEPKEEAVEEDVEDKPTPEEIQ
                     KQKQAELAAIQEKQRQQEIERQQKLQEQQKQEQAKQEELKKQQAEEATRKKAAEAAKL
                     KADAEAKRLEAAAKQAEEEKKAKEALEKKLEQQKKAEAEKKLKEQKELKEQQAKEAKE
                     AKEKAEKEAKAKAEKEAKEKAEKEAKAKAEKEAKEKAEKEAKAKAAAEAKAAQAKNNK
                     ALDDFLNSGDIGGGSSKGGNKNSAGSQGSGGTSGLGQGTNVDGNAYGQRIKKLIQSRY
                     RVDPSFAGKQCDVKIFLSRDGTITNYQVISGDKAVCDAAVSAIVATRKVPPAPSDAVY
                     NMFKSPTLDFSLKVK"
     gene            complement(16577..17014)
                     /gene="tolR"
                     /locus_tag="PXC99_001002"
     CDS             complement(16577..17014)
                     /gene="tolR"
                     /locus_tag="PXC99_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin uptake protein TolR"
                     /protein_id="HDL5417467.1"
                     /translation="MSRRLKRNDIKSEINIVPFLDVLLVLLLIFMATAPIISQSVEVN
                     LPEDTHSQSVSNEDKTPVILEVAGVGEYKLKIDGNYVQSNGQENINESEVVAYAGEQF
                     QKDNNTLFLVAGDKVVPYEEIMKGITLLKDAGVKSVGLMTEGK"
     gene            complement(17156..17836)
                     /gene="tolQ"
                     /locus_tag="PXC99_001003"
     CDS             complement(17156..17836)
                     /gene="tolQ"
                     /locus_tag="PXC99_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein TolQ"
                     /protein_id="HDL5417468.1"
                     /translation="MQTEFSLLSLFLEASIVVKIVMLILIVFSILSWAVIIQRSKILT
                     KAKKDSLAFEDRFWSGEDLNRLHQGLENRRDALNGSEQIFYVGFKEFTRLQQANPDAP
                     ESIIQGSTRAMNLALNREMESLENYIPFLGTVGSISPYIGLFGTVWGIMHSFMGLSAV
                     KQATLQSVAPGIAEALIATAIGLFAAIPAVMAYNRLNLRLGKVEQGYVNFIDEFTTLL
                     HRQAFSKR"
     gene            complement(17858..18259)
                     /gene="ybgC"
                     /locus_tag="PXC99_001004"
     CDS             complement(17858..18259)
                     /gene="ybgC"
                     /locus_tag="PXC99_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HDL5417469.1"
                     /translation="MDFPIRVYYEDTDAGGVVYHSNYLNFFERARTEFLRQQHFSQQE
                     LFSQSLAFVVKRIEIDYKLPARLDDLLNVETTLSELKKATLIFKQRLWKDGDCLSEAN
                     VTVACVDLIKMKPVAIPDDIRQALQKSYFSI"
     gene            complement(18422..18709)
                     /gene="ybgE"
                     /locus_tag="PXC99_001005"
     CDS             complement(18422..18709)
                     /gene="ybgE"
                     /locus_tag="PXC99_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyd operon protein YbgE"
                     /protein_id="HDL5417470.1"
                     /translation="MIHKLYNLTAKGLLKALSFILAAVLFATIWVNSTAFALSFGGKT
                     PYLAMLVFYGMAILWVHGIGFEIRAAIWKVIFLPLLGYLIVIPALWILLVK"
     gene            complement(18709..18807)
                     /locus_tag="PXC99_001006"
     CDS             complement(18709..18807)
                     /locus_tag="PXC99_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CydX/CbdX family cytochrome bd oxidase small
                     subunit"
                     /protein_id="HDL5417471.1"
                     /translation="MFYVTWVLGVLLAIFFATVITISIEKTGKFDE"
     gene            complement(18822..19955)
                     /gene="cydB"
                     /locus_tag="PXC99_001007"
     CDS             complement(18822..19955)
                     /gene="cydB"
                     /locus_tag="PXC99_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HDL5417472.1"
                     /translation="MIDYEILRFIWWILIAVLLIGFAITDGFDMGVLNLLPIIGKSNV
                     ERRIMINTIAPHWDGNQVWLLTAGGAIFAAWPTVYATSFSGFYIAMVLVLAALFFRPV
                     GFEYRAKIDNPKWRSAWDWGLFIGGFVPSLVFGVAFGNLLQGVPFEFNNINQSQYTGS
                     FFGLLNPFALVCGIISLMMLTTQGATWLQMKTTDELHNNSRKVAQVTASIVLVAFILA
                     GVWLYFKDGFVITSELDHNAQSLLTNKTVAVQAGAWFRNYAEMPVLWVVPALVVVGAL
                     LTIIASKANRSGLAFFSSSLMIVGVILTAAVSMFPFIMPSITHPEMSLTVWDATASHT
                     TLTVMLFVAGIFVPLVLAYTIWSYIKMYGRLDASYLEENKAAY"
     gene            complement(19968..21518)
                     /locus_tag="PXC99_001008"
     CDS             complement(19968..21518)
                     /locus_tag="PXC99_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HDL5417473.1"
                     /translation="MLDVVELSRLQFALTALYHFLFVPLTLGLSFVLVVMETLYVTTG
                     KEVYKDMTKFWGKLFGINFALGVTTGITMEFQFGMNWSYYSHYVGDIFGAPLAIEGLM
                     AFFLESTFVGLFFFGWERLSKAKHLLATYCVAFGSNFSALWILVANGWMQNPIASEFN
                     FETMRMELSSFSELVLNPVTQSKFLHTVTAGYVCGAIFVLGISSYYILKGRDLGFAKR
                     SFSVGASFGLIAIISVLIMGDESGYEIGKAQPTKLAAMEGEFETQPAPAAWNAFVIPN
                     TAEMKNEFSIHIPYAAGIIATRSLDKEIKGLKDIRVINEQRVRTGMVAYGLLEKLRSG
                     NYTEADKEAFKAVQKDLGFGLLLKQYTPNVVDATEEQIQKAADNTIPNVGPTFWAFRV
                     MMLSGFLMLILITTAFIQNMRGKVESSRFLLRGLLFGLPLPWIAIESGWFLAEYGRQP
                     WAIYEMLPVGVSNSALTTGDLWFTIGLLCGLYTLFLVVEMYLMFKYGRLGPSALKTGR
                     YYFEQSTK"
BASE COUNT         6590 a         4771 c         3931 g         6247 t
ORIGIN      
        1 gcttacatta taaaaggaga caaataaaac aagaacaaaa gaaaaataaa atcttggctc
       61 ctcctgcggg actcgaacct gcgacatatg gattaacagt ccaccgttct accgactgaa
      121 ctaaggagga attaacggtg taaataatag gctaaaacgt tttagccgtc aaataaaaaa
      181 aataaactgt cgttcatttt ttacatttct tgacattttt tcgccaataa gtatgagaaa
      241 aatacttaat aagaggtaca aaccggacag ttattttgct taggtaatgc catttctctg
      301 acagaaaaat gcaagccgtc aatcattaac aattttccgg aaagagttct gccgatatta
      361 agtagcactt taattgcttc caacgcttga atactgccta tgatgccaac aatcggagca
      421 atgacccccg cttcaacaca acttaaagtc gcatcaccaa acaacctgct taaacattca
      481 tagcacggtt cttgttcttg ataacaaaat acactcacct gcccttcaaa tcgaattgcc
      541 gaaccggaaa caagcggtcg tttttgctta aaacattgca aatttaactg attacgcaca
      601 gtaacgttat cggtacaatc cagcactaaa tctacatttg caatcagctt ggctaactgc
      661 tcatcggaac atcgctgatt gatagtttca atctgaatgt tcggattaat cgccgctaat
      721 cgagctttgg cagattccac ctttggctgc ccgatagtcg catcggtatg taaaatttgg
      781 cgttgcagat tagaaagtga gaccagatca aaatccacca aagtcaaatg cccaacgccg
      841 gcagaagcta agtattgcga tgccgcacag cccaaaccac ctaaaccgac aatcaacact
      901 cggctggctt ttaacttttc ctgcccgtca aaatccacgc tttttaggat aatctggcga
      961 ttataacgta gcatttcgtg atcggtaagt tccattttta cacctaaaga gtaaacgatg
     1021 gcgcaagcgt ccacgcttgt gcctatattt ttattgctag cacaagcgtg gacgcttgcg
     1081 ctatcttaat tcattaatac atcagcgaat taaacggctg aatagtgact ttttccccag
     1141 catcaacatt gcctcgttct gcttctagca caataaaaca gttactttca ttaaaagcgc
     1201 tgaaaatatg tgagccttgc gtgccaactg cacgaacttc taactcacct ttttcattgg
     1261 catagtaata gccccgttgg aaatcttggc gaccgaccgc ttttttcaat tttccggcac
     1321 tgcaagcggt tagattttgg gttaattttg caattttatc tgtcgataaa cccgaaagtt
     1381 tggctaacgc cggttgcgct aattggtaga aagtcactaa tgcagagaca gggttgcccg
     1441 gcagcccaaa aaaccaagcc tgttctaatt taccgaatgc aaaaggcttg cccggcttca
     1501 tcgcaatttt ccagaaaccg atttcgccta atttttccag tacatctttg gtaaaatctg
     1561 cctctcccac agatacgccg ccactggtaa tcaacacatc ggcttgctgt tgggcttgcc
     1621 tgaaagtttg ctcaaacaga attgggtcat caggcaaaat cccaaaatct aaaatctcgc
     1681 agttgagttt ttccagcatt aaacgcaccg caaaacggtt ggtgtcgtaa atttttccct
     1741 cactcaaagg ctcgccaact gaggttaatt catcgccggt tgaaagaatt gccactttta
     1801 attttacaaa aacaggcaca gaagcaatac cgagtgaagc tagcaacggt aaactggcta
     1861 cattcaataa tgagcctttt ttcaagacca atgccccctg tttaacatct tccccaatgc
     1921 ggcgaatgtt actgcctaat tttggaatat ggttaaaggt tacagagcca tcggaattta
     1981 acgtagtttc ctcttgcatt acaacggcat caacgccctt tggcactaat gctcccgtca
     2041 taatccgcac gcattcgcct gcctttattt cgccgttaaa cgggttaccg gcaaaggctt
     2101 taccagccac attcaaggtt aaattttgtg ctaaatctga aatacgaacc gcgtagccgt
     2161 ccatcgccga attatcaaaa ttcggtacat taatcgggga aaaaatatcc tctgccaaca
     2221 ctcggttagc acactcattt aacggaagtt gttccaccaa tttaggtgtc gataaacgag
     2281 caagcatatt atctaacgca tcactcaaag ccaaaagtgc cataatttcc tacctattca
     2341 acgtttagct aatttgtaca aagaaatccc gtacgccaat caacagatta ttcaccgcaa
     2401 tcgcagccag aattaacccc atcactcggc tgataatcgc agcccctgca ttaccaataa
     2461 ggtgctgaat acggtttgcc gctaatagca acaaataggt aataaagagt accaaaagca
     2521 taatgccggc ggtgataatt tgatcgccga tatgaaaacg gtgattgtcg gttaataata
     2581 cgattgccat catcgccccg ggagaagcaa tcgacggtac agctagcgga taaaccgcca
     2641 attcattcag attactgctg atccgcattt cttgctcggg cttgctttcg ccaaaaatca
     2701 tcgttaaagc aaataacaac agcactaagc cgcctgccgc ttggaatgca ggtaacggaa
     2761 tctgcattga ttctaacagc acttgcccac cgataaggaa gaaaatcaaa ataccggcgg
     2821 caatcaagac cgcatttagt gcaattttac gccgtgcttc aatcggcaaa ccaatggttt
     2881 ttgccaaata aacaggaaca gaaccaatcg ggtcgatcac cgcccataaa accacaaatt
     2941 gtaccgctaa tgaatcaaac atattctctc ctgttatctt gataatttgc aaaattttag
     3001 cataaaacaa ccgcttgcac ggctttttct tacagatagc tcaccggtaa cgctaccaaa
     3061 ttttcactta aataaagttt ggtcggatat tggttaataa tcgctccctg ccctaatttc
     3121 cattcactag aaactgagtt tagcaagtca aaactttttg ccattttttt ggttgggctt
     3181 gccgtgacct taatttctat cggataaagc gtgcgatcat attcaataat taagtcgatc
     3241 tctttctggt tagtatcacg gtaaaaataa atcggcggct caattccttg attatgaaag
     3301 gattttataa tttggcttac cacaaaggtt tcaaagaact gccagctttt tgccccttga
     3361 gcaatagttt cgggggtaag ccatttggtt aaatacgcca ttaacccggt gtctagaaaa
     3421 tacacttttg gggtcttaat tgcccgtttc aaatgattgt tgtggtatgg ctggagcaaa
     3481 tagataatgc cggaagtctg caaaatggcg acccaacgtt taatcgtttc attcgatact
     3541 ccaacttctt gagcaatatt actgtaattg agtagctcac cactacgaga ggcaatagag
     3601 accataaaac gggtaaaatc cgttgtgctg gcaatattgg ttaattggcg aacatctcgc
     3661 tcaatgtagg tcgctacata agagcgataa taaatctccc aatccacctc ttgtgcatat
     3721 aaacgaggca tatcgccttt atggataagc tgccagatgt tctccggtga ttttaattct
     3781 tgctcccgag ctaacaaata gtcggttgtc ggtaaaaaag gttgatcgaa cttcacccct
     3841 aaaatttcac gcaacgaaag cccttgtaat tttaaaatag caatacgacc ggcaagtgtt
     3901 tcactcacat tctgcattaa ttcaaaggct tgcgaccccg aaagtaaaaa caaaccgttt
     3961 tgctgttttt tatcaatttc taactttaat aacgcaaaaa tttcaggcac atactgtact
     4021 tcgtctaaaa taagcttgcc ttgatggttt aaaaaaaaca ggcgagattc ttgtttagcc
     4081 agctccagca acattgggtc atcaaaagta atatattgat agccctcacc aatatgttgt
     4141 aacaatgtcg atttaccaac ctgtcttgcc cctgtcacta aaacggcagg aaattgcgcc
     4201 acgagtcgtt ttaacagcga ttgcatttgc cgagaaatca tttttcctcc aaaatagcct
     4261 aaatcaagtt taacctcata tataatgttg aattaaactt aatttaaatt attttttaag
     4321 tttaattcaa cacagaatat tgaattaaac tgaatttctt attttagttc acaaagcaat
     4381 ggctttgctt ttttatgcta aaatacgcaa aatttttaac aaaatagacc gcttgcaatg
     4441 atctttttta cagacttaat tttaaaacga gggcattccg ttctcattga taacagctcc
     4501 gttaccattc acaccgggca gaaagtcggt ttggtgggaa aaaacggctg tggcaaatcc
     4561 tctctttttg ccttactgaa aaatgaatta caacctgaag gtggcgatgt atcgttgccg
     4621 aaaaactggg cgatctcgtg ggtaaatcaa gaaacgcctg cgttagctat ttcagcgtta
     4681 gactatgtga ttcaaggaga tcgggaatat acccatctta tggctgagct agatatcgca
     4741 aatgaaaaga atgacggcaa ccgcattgcg attatccata ctcaacttga taccattgat
     4801 gcttggacaa ttcaatcccg tgccgctacc ctgcttaacg gcttggggtt tagcaccgaa
     4861 caactgcaac tgccggtgaa atccttctcc ggtggctggc gtatgcggtt aaatttggca
     4921 caagctctga tttgtcgttc cgatctgtta ttgcttgacg agccaaccaa ccacttagac
     4981 ttagatgcgg ttatttggtt ggagcgttgg ctgagtaact atcgtggcac tttattgtta
     5041 atttcgcacg accgtgattt tctcgatccg attatcgatc gggtgattca tattgaacat
     5101 caaaagctca atgaatacac cggcaattac acctcgtttg agattcaacg tgcgaccaaa
     5161 atcgcccagc agaatgccgc ttatcagcaa cagcaacgta aagttgctca tttgcagagt
     5221 tttatcgatc gctttaaagc caaagcgact aaagcgaaac aggcacaaag ccgaattaaa
     5281 gcgttggaaa aaatggagct tattgcccca gcctatgctg attcgccgtt tgaatttgaa
     5341 tttcgcccac cgcttgcact gcctagcccg ttattaatga tggaaaaagt cagtgccggc
     5401 tatgcggaaa aaacggtgtt ggaatcggtc aaactgaatt tggttcccgg ctctcgtatt
     5461 ggtttactcg ggagaaacgg tgcagggaaa tccacgctga ttaaattatt ggcgggcgaa
     5521 cttccgcccc aaaacggctc aattcaactg gcaaaaggcg tgcaactcgg ctatttcgcc
     5581 caacatcagg tggatacact acgttttgat gaaagcccac tttggcattt acaaaaactc
     5641 gcaccggaaa aaaccgagca ggaattacgc aattatttag gcggtttcga ttttaaaggc
     5701 gataaagtgg tacaagctgt gaaatcattc tccggcggag aaaaggcccg tttagtgctt
     5761 gccttaattg tatggcaacg cccgaattta ctgctattag atgagccaac caaccattta
     5821 gatttagaaa tgcgacaagc cctggttgat gcactgacct attacgaagg ctcgctagtg
     5881 gtggtttcgc acgaccgcca tttattgcgt agcaccgtga atgaatttta tttagtgcac
     5941 gaccgcaaag tggaaaaatt taaaggtgat ttagacgatt accaaaaatg gctcaatgag
     6001 caaaacgcct tagccaacga gccgaaatcc gtacttgcaa aagattcggc aaattcgacc
     6061 gcttgctcta gcaccaatga aaatagtgca gctcaacgca aagagcaaaa acgcttagag
     6121 gcagagcgcc gccaacaaac cgccccattg cggaaaaaaa ttactcaact ggaaaaagag
     6181 ttagaaaaag caaccgaaaa attaaataaa ctcgaagcaa tgcttaccga aagcgacatt
     6241 tatgaagccg aaaataaagc aaaactaact gaaacacttg cgaaacagtt agaggcaaaa
     6301 aggctggttg aagaaattga aatgcaatgg ttggaggctc aggaggagtt tgagaccatg
     6361 ttacgctagg gttctacaag atagcgcaag cgtccacgct tgtgccattt aagggaacta
     6421 tacacctcaa aaaaacaatg atcattaagc tagctttttt ataaatttaa aaacctatag
     6481 attaaataaa taatgatatt aatagtaaaa tcacgagtgc aactacactg acgataataa
     6541 aatcaggcat acttattctc cctataaaat gtggtaatgt aactacaaat taattatata
     6601 atgaacctaa aaaaggttca acattatttg tacctaatat aggtgcaatg aaaaatctta
     6661 gattatcaat acattccagc gagcatattt ggttaagaga actattctta aaacgccgtt
     6721 tggaactagg gctaacacaa cgcacattag gagaaaaaat gggcgttctt tactcattta
     6781 tcggaaaagt agaaacagga gatcgcagat tagatatttt tgaatttatc gcttattgca
     6841 aagggttaga tttagatcct ttatctgtat tgcaagaaat tgaacaacaa tttcctcata
     6901 aataaaggca ttgagttata actcaatgcc tttattttct atgtcaaatc tctacatgct
     6961 cggcttagtc tctgccagaa tggcgtattt attattcatt tcctctgccc aagcggttaa
     7021 atttgggtaa ttttttgcaa gatcgtagcc tatcttatct aagcggaatg cccaccagtc
     7081 aattaatgct actgcggtta atgtgcctaa attcagctct gtgccaaact cttgcaatgc
     7141 ctcttctaat tgtctgaacg aacggatatt gcgttccatt aattgctcgt ggcggctgac
     7201 ccaccattca ttctcggggc gagccatacg ttcttgtaat aaagttggca tcgtattttc
     7261 cataatgccg tccgccaaat tatgtaatgc caacactgcc cagcgaggtt taccctcttt
     7321 aggtaacagt ggagtgttat tgcctttttg gtcaagatat tcgctaatta acaaactacc
     7381 gaaaagccaa cgtccgcagt tgcgttgtag ggcaggaata cgtcctaacg ggttatcttg
     7441 attatgtggc gaatttggat ccattgcttt tgtcacccgc aacatttcga ctttatcgtc
     7501 taattggtgg tgtttaatca ccgcaagggc tttgcgggcg aaagggctgg tggttgagta
     7561 ccaaagtttc atactattct ccgtgtttga tgtgattgga tttgcaaatt ttttgccaaa
     7621 aatgaccgct tgtcggcaag gcttgcactg agattttctc attttcgtat tcaaaatcaa
     7681 gctgataagc gtgcaaataa acacggtcgg cttggctacc tgaatagagt ttatcaccta
     7741 aaatcgggct gcccaaactt ttcattgcca ctcttaattg gtgagttttg cctgttttgg
     7801 gttgcaaaat aaaatgcctg agcgagtctt caacagaatg agaaataaat tgcgttactg
     7861 ccgggttttc cttactgtgg cataatttcc acgctccatt tctgcttttt tgcatatcgc
     7921 caacaattct accctgcttt ttcttcggct ttttatcgct taatgcccaa taggttttgt
     7981 agattttatg ctgttcaaat aaatggtaaa accttgctgc cgcctcttta ttcaacgcta
     8041 aaatcagtaa acctgaggtg attttatcca gacggtgaac cagccaaacc tgctttacat
     8101 tcagttggcg agccactaat tccgttaagc cgatttcagc ctcatcttta tgcacactca
     8161 agccttccgg cttattgata ataataaaat cacgatgttg ataacaaata ggcaatgttg
     8221 gggtcatttt gctataatcc ttccaatttt tgactatttt agcaaggaaa ttacaatggc
     8281 tgttaccatt tatttagtac gacacggcag aaccgtgtgg aatttggaag gcagattaca
     8341 aggctcgggc gattccgctt tagtagaaga agggattatc ggagcgaaga aaaccggcat
     8401 tgcgttaaaa catattccgt ttaccgccgc ctattccagt atgcagaaac gggctcaaga
     8461 taccgcaaac tacattttag cagaaaatga acgcagtaat attccgcatt ttcatcataa
     8521 aggcttgaat gaatttgatt ttggcagctg ggaaggaatg aaatctgtcg atttgcaaga
     8581 aaatgatgaa tattgggtga tgaaacgtac accggcagaa tatctggcaa aagcaaacgg
     8641 tggcgagcga tttgagcaac tttatcaacg ggtgactcag gcgttcaatc aaatcgccga
     8701 gctacaccaa aatgacggca aagtgctgat tgtttcacat ggtatgacct taaccttact
     8761 cacggctgtg ttaaaaggca ttgcgtggca agatttccgc aatgaagaaa aacatagctt
     8821 tgtgttcaat actgccatta cgaaagtaga agtagagaat ggcaaagtaa cggtgctgga
     8881 atttaataat accgaccatt tggataatgt gccaacaagc caatacaaac gataatatta
     8941 agggcggaac attgtccgcc catagcattt tctaatcaga gaacactttt tctttcgttt
     9001 ctgttttagc aaataccgta tttttgaccg aagtaagcaa ctcctgacga atagctgaaa
     9061 ttcttggctt ctcattcgct tgaaaagcaa caggacgaca aaattccatt gctttaatgc
     9121 caaggcgagc agtgagtaaa cccacaccaa taccttgtgc ggcacggagc gataatttcg
     9181 ccgtaaggtt ttgcgagaag aaatccattc caacatcagt agcgatttcg gttgcaccgg
     9241 cgaacaccat atttttcagc accattttga acagttttaa gcggctgata taacccaatt
     9301 ccattccata ggctttggta attttattca ctaaagcgat atttcttgcc gccattaaca
     9361 acacatcaac tattgccagc gggctaaccg ccacaatcac cgcattttct gccgcattgc
     9421 gggaaatcat ctgcttaacc tgtttatcta tcggctttag cacattttcg ctaaacagat
     9481 atagtacctc tttggcatta taagcctcgt tcagttcgct tttccaaagt tgctcggctt
     9541 gagcaatgct cggcaagtga ttaagctgat ttgcaatatt ttcgcaaaat ttgaccgctt
     9601 gttcgccatc attggaaggc agctgttcca gcaataattg gttactcatt tgttgatttt
     9661 tctgatgatt tcgcaaatac accaactttc gccattcgga aataatcgcc ccaacgccca
     9721 acaagctgac aataaaaaag actatcgaga acgcaaaata gatccactct ctttgctgga
     9781 acgtatcaat caaccactga atactttgag caattaccgc cacgccaaac aaggcaagtg
     9841 tggcaagtag tactcgaatc caaaagcggg aaggcttaag gctttcttca ataatcagct
     9901 ccgcctcaac tgctttttcc tcttcttcaa taatcgcatt ttcgagatca aactcttgtt
     9961 taggttcaaa atgctcggtt gtttttagct cttcttcatt aaaaatttgc ttactcatta
    10021 ttcctccact gccttttcaa tatgtgcttt tagaccatca tagccgtgtt cggttttcaa
    10081 gatatcaaat aattctaccg cttgaggata ttctttatcc aaataacgta gccattgttt
    10141 gatgcgagca acgtggtaaa aaccggtatc aaactgattt tccatctgaa cgtacttaaa
    10201 caatagctgt agcacttcat tccacgccat tttcggaaca ttatatttca ccactttgct
    10261 taaattcggt gtgtttaacg ccccacgccc catcattaat gccttgcaag cggttatttt
    10321 ttggcaattt ttcgccgatt caaaatccca aatttcgccg ttggcgataa caggaataga
    10381 cagccgttgt tgaatttcgc caatcgcctg ccaattaatt ctttctgctc gataaccatc
    10441 aactttggtt cgcccgtgaa cggtaatttc attcgctccg ccctgttcta ccgcatcggc
    10501 aatttcaaaa cattggctaa cggaatccca acctaatcgc acttttacgg aaacgatttt
    10561 atcgcttggc acagcttcac gcatcgcttt ggttgcacga taaatcagtt ccggatcttt
    10621 taataacgaa gccccaccat tgctgccatt taccgtttta gaggggcagc cacagttgag
    10681 atctaccccg tgtgaaccaa gctcaatggc aagagctgca ttttctgcca gccactgtgg
    10741 gtgttgccct aaaagctgta cccgcactgg tgtgccggaa tcggttaatc cgccttgata
    10801 tagctcaggg gctaggcgat aaaaggtttt cttcggtaaa cgttgatcga ccactcgcac
    10861 aaattcggaa atacagagat cgtagtcatt cactgaagtt aaaaggttgc ggacaaaagg
    10921 gtctaaaacc ccttgcatcg gggcaagaat aacgttagga attggattca ttggtaaaat
    10981 aaaaaataca agcggttatt ttttctcaac attttgcaaa aaattggcaa gaaacaaccg
    11041 cttgaaggtt aaaaatgtct atcgtgaatg cgcaaatcgg ggcgagcgat caggtaaatc
    11101 atcagtgcgg ttaatgcccc aagagtatcc gcaagcatat ctttttgagc gtcccaaata
    11161 tccccttgcg agcctagaaa ttccacgccg gcattgccac cttcaatcac ggcatattgc
    11221 cattcaataa tttcgtaagc tgccgccacc gacataatga aaaacagcga gaagaaaaat
    11281 gctacgccca ttccgcactt gcgtttacgc agtaaccatt ctgccatcgg gaagctgtaa
    11341 aaaccgataa tgtaatgtgc tactcgatca aaatggttac gatcttcacc taaaatcggg
    11401 gttagaaatt gatttgccca ctcaaacggc acattggcaa aggtatattt tgccccgatc
    11461 aagtgcataa tcagccaaag cgacatcaaa aaataagcta acccactaaa ctgaaattta
    11521 gggtaagtga taattaaaag ggcaaaaacg ataaaaatcg gtatcacttc cgcataccaa
    11581 actgcgcggt ctgtcggatt taaccctgac caaaccgcaa tcacggtaat aacaatcgct
    11641 aaaaatagag ggatgatatg cgagcgtgaa tccattattt ccactctttc actttacaaa
    11701 ttaaatcgta cgccgcttga atttgttgag ctttctcttt tgccaactcc atcatctcat
    11761 caggcaaacc tttagcggct aatttatccg ggtgatgttc gttcattaac ttacgataag
    11821 cccgtttcac tgtattttga tcgtcttgtg cggttacgcc taatacggta taggctgcct
    11881 caatgcttgg ttgtgcaggc tgctgataac tgccctgata gccaccttga gattgctgat
    11941 gataactccc attttgctga taatagccac cattgcggaa ttgttgagct gccataatca
    12001 ttgcgatcat ctgctcaaat tggaagcgag acattcccat tgtttcggca atcgtaaaca
    12061 gaatttgttg ctcgttcaca tcaagttgcc catcttgcaa ggctgcctgc atttgcactt
    12121 cgacaaagaa acgtaataag tcagttcttg ccccacaggc ttctctgaac tcttgaatga
    12181 cttggcgtaa cgggaagtca ggctctttac ctaaggtaaa ggcattttgc gctaattgct
    12241 gggctgcact atctaatttt aagcgagcca ttaacgctcg ggctaattca atatccgctt
    12301 cagtaacacg cccttttgct ttcgcaatat gccccaacac cgcaaaagtg gtttgggtga
    12361 aaagcgattg gcgagttaaa tttttaccga aaagacttga acgaactgaa cctaattcat
    12421 agagtttttt atcggctaaa tgcccgataa aagcgccaag tatcccacca aataaaccgt
    12481 gaaaaagctg atagcccaag aaaaaaccga ctatttttcc gataaattgc atttttttat
    12541 ccttttatag aaatgaataa acgttattct aacaaaattt tactttgatt gctttttagt
    12601 taatacaaac ataagccagc ttgagacaaa aataattgca taacctagcc aactcaacat
    12661 atccgggtat tgttcaaaga acaacaaccc taaaattgca ctaaatagca cagaggcata
    12721 actataaatt gagatgtctt tcgccgccgc atatttatag gcggtagtta cacaaaactg
    12781 cccgaccgct gaagttaccc ctgctaacac taagtagatt gtctgtaaat tggttagcac
    12841 tacataatca atggcgacaa aaggcaataa tatcaaggtc gaaaaggcag aaaaaaagaa
    12901 aacaatggta ttaggtgatt ctactttttt ggtttttgcc aataacctta agcataaata
    12961 ggcaatggct gcaaacacag agccaatcac gccaaccaga taaggcataa agcgaatatc
    13021 aactgccggt ttgataataa aaagtgcccc gataaaggca ataaggcata aaatccattg
    13081 caggagagat gctctctctt ttaaaaaaat cgcagaaaga ataattaaaa tgaacgacgt
    13141 gagtttgcca atcatatcga catcacttag cacaaggtga tcgatgatat atacaccaca
    13201 taaaatcccc aataacccgg tgatggaacg gcttaataat aacaaacgat tttctgcata
    13261 accaaagaat aattggcgat ttttccacac aatataaccg cttatcaatg ctgtgcgttg
    13321 cgaaaaatcg ctttttgtgc aatcggtaca tcccccgaaa gacgaagaaa agcagccata
    13381 atcgcaaagc ttagtgccga caaaagcaca caaaaaatgg ctttaaataa cggcgagagc
    13441 gaattccaaa aattcatagc ataaaggctt ttaataaaaa taaagccctg attattcagg
    13501 gcttcaattt agaatcaact aagaattagt attctaatac tgcacgacgg tttttcgcgt
    13561 agtcagcttc tgagtgacct aatactgctg gtttctcttc accgtaagaa acagttgaag
    13621 tgttgttagc acctttagct gctaagtaac ctttaactgc atctgcgcga cgttgaccta
    13681 atgcgatgtt gtactctgga gtaccacgct catcagcgtg accagcaata gttacgttac
    13741 cttgagtttt tgctaataat tgagcgtgag cgtctaataa ttgacggtat tcaccttcaa
    13801 ctgcatagct gtcaaaaccg aagtatacag tgttgtattg tgcttttaat tgttcagctg
    13861 ttaaaccacc gaattcgcct gctgcatttg ctgctgcatt tgctgctgcg tttgctgctg
    13921 cgtttgctgc tgcatcatct gatgagctgc tacatgctgc taatgcgaaa gctggtactg
    13981 ctaccattaa tactttagca aattttttca tttgttgctc ctaatagaga aatattatta
    14041 tttagttaag tatggtgacc atgcagggaa tttataatgt ccacctgcgc caggcaaatt
    14101 agctttaaaa cgcccatctg cagacaccaa ttgtagcact ttactcgtac ctttggtaga
    14161 gctataaata accataatgc cattcggtga aatacttgga ctttcgtcta agaaagttga
    14221 actcagtact tctgtgccac ctgaagcgag atcgcgtttc acaactctat caccggcaat
    14281 catgattaaa ttcttaccat cagatgatac tttcgcatta tagctaccgc taccgcccat
    14341 tgggctagca ccaccacctg atgaactcat tctataaact tgaggagaac ctgcacggtc
    14401 agacgtaaag tagattgtgc taccatctgg agaccagctt ggttcagtat tatttccagc
    14461 attagcggtc aatttacttg gtgtaccacc gccactacct acaacataaa tatttaactc
    14521 accatcttga tttgaggcaa acgcaatgcg agaaccgtct ggagagaatg atggcgcacc
    14581 attatgtcct ttcaatgctg ccactacacg gcgagcacct gaacgaatat cgtgaacaac
    14641 aacctgcgct tttttatttt caaatgtcac ataagctaat ctgctaccat ctggtgacca
    14701 ctctggcgac attaaaggct ctttactggt tgtaatagta aaggcattaa aaccatcata
    14761 atcagatact cgtaattcat acgatgatac gccacgttga accacatacg caattttagt
    14821 tctaaatgca ccgcgaattt gggttaattt ttcaaatacc tcatcactta ctgtatgcgc
    14881 accttgacga atttgggctg ccggaacaat aaatgaacct tgggcaatga caccacccgc
    14941 tgtacccgat gtaccaagag tatcaattaa ttgataagcg acattataac cgccacctgt
    15001 gctactcact tggccaacta caatattatc aataccgata gcactccatt gatctgccac
    15061 cacttccgct gctgatcccg gttgagcagg catttgagag cgttcaagcg gtgtaaattt
    15121 accactattt cgcaaatcat cagaaataat ttgtgcaaca tctgccggca caccgctggc
    15181 tttaaatggc acaaccgcaa tcggctgagc catacttaca ccttcatcaa tagaaattcg
    15241 cacatcagaa tcagcaacca cctgagttgt caataatgct gaaaagatgc ctattacacc
    15301 cgatatacga gagaataatt tcatttgtag tcctctaaat tatttaactt ttaaactaaa
    15361 atcaagtgtt ggtgatttaa acatattata taccgcatct gatggtgcag gtggtacttt
    15421 tctagttgcc actattgcac ttaccgctgc atcacatact gctttatcgc cactgataac
    15481 ttgatagtta gtaattgtgc catctcgact taagaatatc ttaacatcac attgttttcc
    15541 ggcaaaactt ggatcaaccc gatatcgaga ttgaattaat ttcttaattc gttgaccata
    15601 tgcattacca tctacattag taccttgccc taagccactt gtaccaccag aaccttgtga
    15661 tcctgctgag tttttgttac cacctttact tgaaccacca ccgatgtctc cactattgag
    15721 gaaatcatca agtgctttat tgtttttcgc ttgggcggct tttgcctcag cagctgcctt
    15781 cgctttagct tctttctcgg ctttctcttt ggcttctttt tctgcttttg ctttggcttc
    15841 tttctcagcc ttttcttttg cttctttttc tgccttggct ttagcttctt tttctgcttt
    15901 ttccttcgct tctttagctt cttttgcctg ctgttccttc agttcttttt gctcttttaa
    15961 ctttttctca gcttccgctt tcttctgctg ttcaagcttc ttttcaagtg cttctttagc
    16021 ttttttctct tcttcagctt gtttagcagc agcctctaaa cgcttagctt ctgcatctgc
    16081 tttcagtttt gctgcttcag ctgctttttt acgagttgct tcttctgctt gctgcttttt
    16141 aagctcttct tgcttagctt gttcttgctt ttgctgttct tgtagttttt gctgacgctc
    16201 aatttcttgc tgacgctgtt tctcttgaat cgccgctaac tcagcttgtt tctgtttttg
    16261 gatctcttcc ggagtcggtt tatcttccac atcttcttca acagcttcct ctttaggctc
    16321 tacctttggc ttcgatgctt ttgagccttt tttctctgcc aataactgcc catattcagc
    16381 agccacttgc ccagtatcta ccatcacagc ttcaaagcta tcgctatcgc caccactgcc
    16441 accagccgca gcgagttccg tcttagtgaa aagagacccg agcaataaca acccgattaa
    16501 caatatatgc aataagatcg aaacaataac cgctagctct agtctatctt gttgagattt
    16561 cacacgttat ccttggctat ttaccttctg tcattaaacc taccgatttc actccggcgt
    16621 ctttaagtag tgtaatacct ttcataattt cttcataagg tactacttta tcaccggcaa
    16681 ctaaaaataa ggtattgtta tctttttgaa attgttcccc tgcataggca acaacttctg
    16741 attcattaat attctcttgc ccattacttt gcacatagtt accgtcaatt ttcaatttat
    16801 attcaccaac acctgccacc tccaaaatca ctggagtttt atcttcatta gaaactgatt
    16861 ggctatgcgt atcttccggt aaattaactt ctacactttg actgataatt ggggccgttg
    16921 ccataaaaat cagcaataat accaacaata catcaagaaa tggaacaatg ttgatttctg
    16981 atttaatgtc attacgtttt aaacgacgag acatatattc ctctttacag gtgcttagca
    17041 ccttaattga tctgaaataa ccggcacagt gtcccggtct cgaataatgc ggttacaagc
    17101 ggtctttttt acgaaaaact ttacaaattt tcattaaaaa tcaaccgctt gtagattatc
    17161 tttttgaaaa agcctgacgg tgtaataagg tcgtgaactc atcaatgaaa ttcacatacc
    17221 cttgctcaac tttacctaaa cgtaaattca aacggttata tgccattact gcaggaatcg
    17281 ccgcaaataa accgatagcc gttgcaatta atgcttctgc aatacccggt gcgactgatt
    17341 gtaaagttgc ttgcttaact gcacttaatc ccataaagga gtgcataatt ccccaaaccg
    17401 ttccgaataa accaatatat gggctgattg aacccactgt gcctaaaaac ggaatgtagt
    17461 tttctaaact ttccatttca cggtttaatg ctaagttcat cgcacgggta gaaccttgaa
    17521 taatcgattc tggcgcatct gggttcgctt gttgtaaacg ggtaaattct ttaaacccaa
    17581 cataaaagat ttgctctgaa ccatttaatg catcacgacg attctctaaa ccttggtgta
    17641 aacggtttag atcttcccct gaccagaatc gatcttcaaa agcaagggaa tcttttttgg
    17701 ctttagttaa aattttgctg cgctgaataa tcaccgccca agacaaaatt gagaatacaa
    17761 taaggatcag catcacgatc tttaccacaa tacttgcttc taaaaataac gaaagaagac
    17821 taaattcagt ttgcattaat aaaactccga atagttttta aatagaaaaa taactttttt
    17881 gtaatgcttg acgaatatca tcaggaattg caaccggctt cattttgatt aaatcaacac
    17941 aagcgaccgt aacatttgcc tcactcagac aatcgccatc tttccacaat cgttgtttaa
    18001 agataagggt tgctttcttc aattctgaga gtgttgtttc cacatttaat aaatcatcta
    18061 aacgagcagg gagcttataa tctatttcaa tcctcttaac aacaaaagca agggattggc
    18121 taaaaagttc ctgctgtgag aaatgctgct gtctcaaaaa ttccgttctt gcccgctcaa
    18181 aaaaattcag atagttggaa tgataaacta ctccgccggc atcagtatct tcataataaa
    18241 cacgaatcgg gaaatccata agcattattt ctctcattca aaatgaaaaa acgcccaaaa
    18301 tttaggcgca aattgtgaga tattttagga tcagaaatat tgttatgcaa gtatattttt
    18361 tggtaaattg caaaaatatt ttttatctat caaaaataaa aatagagaca taaaaatgcc
    18421 tctatttaac aagtaaaatc cataatgccg gaataacaat aaggtaacct agaagtggta
    18481 aaaaaatcac tttccaaata gcagctcgga tttcaaatcc aattccatgt acccataaaa
    18541 tagccatacc ataaaatacc aacattgcta aatacggcgt ttttccacca aaagaaagag
    18601 cgaaagcggt cgaatttacc caaatagttg caaataatac agccgctaaa ataaaagaaa
    18661 gggcttttaa caagcccttt gctgttaagt tatagagttt atgaatcatt actcgtcaaa
    18721 cttacctgtt ttttcaatgc tgatcgtgat gactgttgca aagaagattg caagcaatac
    18781 acctaagacc caagttacat aaaacatatt gtgtctcctt attagtaagc tgctttattt
    18841 tcttctaaat aactagcatc taaacgacca tacattttga tatatgacca aatagtatat
    18901 gctaatacta acggtacaaa gataccagca acaaataaca ttacagttaa tgttgtgtgg
    18961 ctagcagtag cgtcccaaac cgttaagctc atttctggat gagtaattga cggcataatg
    19021 aatgggaaca ttgatactgc agcagttaaa atcaccccaa caatcatcaa tgatgatgag
    19081 aagaatgcta aacctgaacg atttgctttt gaggcaataa tagtcagtaa tgcacctact
    19141 acaactaatg caggaacaac ccataataca ggcatttcag cataatttct aaaccatgca
    19201 ccagcttgaa ccgctacagt tttattcgtc aatagagatt gtgcattatg atctaactcg
    19261 cttgtgatca caaaaccatc tttaaaatat aaccatacac ctgcaagaat aaatgccact
    19321 aatacaatag aagctgtcac ttgtgccact tttcttgagt tgttatgtag ctcatcagta
    19381 gttttcattt gtaaccaagt tgcaccctgt gtggttaaca tcattaagct gataataccg
    19441 cacactaatg caaatggatt taataaacca aagaatgaac ccgtatattg tgattggtta
    19501 atattattaa attcaaatgg tacaccttgt aataagttac cgaatgcaac accgaatact
    19561 aatgatggaa cgaaaccacc aataaataat ccccaatccc aagcactacg ccatttcgga
    19621 ttatcaattt ttgcacgata ctcaaaacct acagggcgga aaaataatgc tgcaagcaca
    19681 agcaccattg caatatagaa acccgagaac gaagttgcat agactgttgg ccatgcagcg
    19741 aagatcgcac caccagcggt caataaccat acttggttac catcccagtg aggggcaatt
    19801 gtgttgatca taatacgacg ttcaacatta cttttaccaa tgataggtaa aaggtttaat
    19861 acgcccatat caaaaccatc agtaattgca aagccaatta acaataccgc aattaagatc
    19921 caccaaataa agcggagaat ttcataatcg atcatttcta actcctatta tttagttgat
    19981 tgttcaaaat aataacggcc tgtttttaat gcactagggc caagacgacc atatttgaac
    20041 attaaataca tttctacaac taagaatagt gtatataaac cacacaataa gccgattgta
    20101 aaccataaat cacctgttgt taatgcagag tttgacacac cgacaggtaa catttcatag
    20161 atagcccaag gctgacggcc atattcggca aggaaccaac cagattcaat cgcaatccaa
    20221 ggtaacggaa gaccgaataa caagcctctt aataagaaac ggctactttc tactttacca
    20281 cgcatatttt gaataaatgc tgtcgtaatc aagataagca tcaagaagcc agataacatc
    20341 attacacgga atgcccagaa tgtagggcct acatttggaa ttgtattatc tgctgctttt
    20401 tgaatttgtt cttcagtcgc atcaaccaca ttaggtgtat attgttttaa caataaccca
    20461 aagcctaaat ctttttgtac agctttaaat gcttctttat ccgcctctgt ataattgcca
    20521 gaacgtaatt tttctaatag tccgtaggct accataccgg tacgaacacg ttgttcatta
    20581 attacacgaa tatcttttag gcctttaatt tctttatcta aagaacgggt tgcaataata
    20641 ccagctgcat aaggaatatg aattgagaat tcatttttca tttccgcagt atttggaatc
    20701 acaaaagcat tccaagcagc tggagcaggc tgagtttcga attcaccttc cattgcagct
    20761 aatttagtcg gctgagcttt accgatttca taaccagatt catcacccat aatcagtaca
    20821 gagatgatcg caattaaacc aaaacttgca cctactgaga atgaacgttt tgcaaagcct
    20881 aagtcacgac cttttaagat atagtatgaa ctaataccta atacaaaaat agcaccacaa
    20941 acatagcctg cggttacagt atgtaagaat ttagattgtg taactgggtt taatacaagt
    21001 tcagagaaac ttgaaagctc cattcgcatg gtttcaaagt tgaattcaga agcaatcggg
    21061 ttttgcatcc aaccattagc aactaaaatc catagtgcag agaagttaga accaaacgca
    21121 acacagtaag ttgctaataa atgtttcgct ttcgataaac gttcccagcc aaagaagaac
    21181 aagcccacaa aggtagattc taagaagaac gccattaaac cttcaatcgc taatggagcg
    21241 ccaaaaatat cacctacata atgagaataa tatgaccagt tcataccaaa ctggaattcc
    21301 attgtaatac cagttgttac ccctagggca aagttaatac caaataattt accccagaat
    21361 ttagtcatat ctttatatac ttctttaccc gtagttacat acagggtttc catcaccaca
    21421 aggacgaaag aaagacctaa tgtaagcggt acgaataaga agtgatagag tgcagttaga
    21481 gcaaactgca aacgtgagag ttcaactaca tctaacatct caaacctctt atattaata
//
LOCUS       DANLVT010000031        21126 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.031, whole genome shotgun sequence.
ACCESSION   DANLVT010000031 DANLVT010000000
VERSION     DANLVT010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 21126)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21126)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21126
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.031"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            175..858
                     /locus_tag="PXC99_001009"
     CDS             175..858
                     /locus_tag="PXC99_001009"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HDL5417474.1"
                     /translation="MQLVFIRHGFSEWNAKNLFTGWRDVNLTERGIEEAKSAGQKLKA
                     AGFEFDIAFTSVLTRAIKTCNIVLEESDQLWIPQVKNWRLNERHYGALQGLDKKETAE
                     KYGDEQVHIWRRSYDISPPDLDPQDPNSAHNDRRYANLPKDLIPNAENLKITLERVLP
                     FWEDHIAPALISGKRVLVTAHGNSLRALAKHIEGISDADIMDLEIPTGQPLVYELDDN
                     LKVISKRYL"
     gene            complement(995..1552)
                     /gene="frr"
                     /locus_tag="PXC99_001010"
     CDS             complement(995..1552)
                     /gene="frr"
                     /locus_tag="PXC99_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HDL5417475.1"
                     /translation="MINEIKKDTQDRMEKSLEALKGHIAKIRTGRAQPSLLDGIQVEY
                     YGSATPLRQVANVVAEDARTLAVNVFDKSLISAVEKAILTSDLGLNPSSAGTTIRVPL
                     PPLTEERRRDLIKIVKAEGEQGKVAIRNVRRDANDQIKALLKDKEISENEQHKAEEDI
                     QKITDTFIKKVDEVLAAKEKELLDF"
     gene            complement(1604..2320)
                     /gene="pyrH"
                     /locus_tag="PXC99_001011"
     CDS             complement(1604..2320)
                     /gene="pyrH"
                     /locus_tag="PXC99_001011"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HDL5417476.1"
                     /translation="MSKPIYKRILLKLSGEALQGSEGFGIDPSILDRMALEIKELLAE
                     GVEVGVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAEVNAKLM
                     SAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGSPFFTTDSAACLRGIEIEADVVLK
                     ATKVDGVYDKDPAKYADAKLYNKLTYAQVIEQELQVMDLAAFTLARDHGMPIRVFNMG
                     KPGALRNVVFGTEEGTTISE"
     gene            2412..3974
                     /locus_tag="PXC99_001012"
     CDS             2412..3974
                     /locus_tag="PXC99_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HDL5417477.1"
                     /translation="MKSKQLFGILVAISLATAASCLMLIGSGFFPNPSIFEVILGVFL
                     IIALASSKWTYYLLLLPISIAYAIYTPVGIKFGKPTYEYIASIFATDMMESKEFIAQL
                     PILNIAAGIAIVLAVIFYRKITNRYQIRFLRNKTFVISAFVLMLFSLAPFKFFQEFYN
                     SSLKVKKELEVLNNLTLDSQWGQSTLSSTSNYDDYVLIMGESARKDYHHAYGYPAANT
                     PFMSSAKGTLIDGLTSGGTNTIASLRLMLTKPDTEKWEANYGLTLIDLIKSTGIKTYW
                     ISNQGYLGNYDTPISSIGNKSDVKIFTKAGDSLNTNVSDFELLPHFAKVIEEPAQGKR
                     FIFLHLYGSHPITCDRLTDYPKMFDDDKLPKRYFNVNCYVSSIKKTDELLKRVYDLLV
                     KNQENHQRSFSMVYLSDHGLSHEVSKENIVIHNGKDRSKLHYDIPLFKISSDDTQRNE
                     YKAFKSGLNFTNGIANWIGIENPLLDKEINLFNEQNDKSDYGLKKIIETQSTVEDPAV
                     PIPESYLYKATN"
     gene            complement(4038..4889)
                     /gene="tsf"
                     /locus_tag="PXC99_001013"
     CDS             complement(4038..4889)
                     /gene="tsf"
                     /locus_tag="PXC99_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HDL5417478.1"
                     /translation="MAEITASLVKELRERTGAGMMECKKALVEANGDIELAIDNMRKS
                     GQAKAAKKAGRVAAEGVILARVASGFGVLVEMNCETDFVAKDAGFLELANEVADFAVA
                     NKGTTIEALQAQFEEKRAALVAKIGENMNIRRVQYLEGEVIAQYLHGAKIGVLVAGAG
                     SEDELKKVAMHVAASKPEFVNPEDVSADVVAKEREIQIEIAMNSGKPKEIAEKMVEGR
                     MAKFTGEVSLTGQPFVMDPSQSVGQYLKSVNTSVSNFIRLEVGEGIEKVEEDFAAEVA
                     KITGGNA"
     gene            complement(4985..5704)
                     /gene="rpsB"
                     /locus_tag="PXC99_001014"
     CDS             complement(4985..5704)
                     /gene="rpsB"
                     /locus_tag="PXC99_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005645552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HDL5417479.1"
                     /translation="MAQVSMRDMLNAGVHYGHQTRYWNPKMKPFIFGARNGVHVINLE
                     KTLPLFNEALAELTRIASNNGKVLFVGTKRAASDAVKAAAVESQQFYVNHRWLGGMLT
                     NWKTVRQSIKRLKDLETQTQDGTFDKITKKEALMRTRELEKLELSLGGIKDMNGLPDA
                     IFVIGADHEHIAIKEANNLGIPVFAIVDTNSTPDGVNYIIPGNDDATRAIQLYLDSAV
                     AAIKEGRGVETVEVAEEASAE"
     gene            6049..7077
                     /locus_tag="PXC99_001015"
     CDS             6049..7077
                     /locus_tag="PXC99_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5417480.1"
                     /translation="MKKTLSALAIAAATFTSTSTLAANEVNVYSYRQPYLIEPMLKNF
                     EKDTGIKVNIIFADKGLVDRVKQEGELSPADVLLTVDISRVMEIVNADLAQKIDSKVL
                     EKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFDYLDLAKPEYKGKVCVRSG
                     KNSYNVSLFAAMIEHYGIEKTKAFLEGLKANLARKPQGGDRDQVKAIKEGICDYSIGN
                     SYYYGKMLDDEKQKSWAEAAIINFPSGEHGTHKNISGVVIAKHSPNKANAVKLIEYLS
                     GEKAQGLYAELNHEYPVKEGIEPSAIVKGWGTFKSDTIKLEDIAKNYEAALKLVDEVK
                     FDDFSEKK"
     gene            7200..8846
                     /locus_tag="PXC99_001016"
     CDS             7200..8846
                     /locus_tag="PXC99_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5417481.1"
                     /translation="MRSQFCWKSIAALTTFIVLLPLIAICYHALQGDNENLAHLWQTM
                     LPIYLKNSTLLVLGTVFLALIFALPTAWIVANYRFWGQRTLQWLLCLPLAMPAYLIAY
                     LYTDLLDYSGAFQGWLRSIFGWTHPQDYWFPQIRTLYGACFVLALVLYPYIFLLVRVA
                     LLEQSENLTHSAKMLGASPSQLFRRITLPLIRPSVAVGIALVAMETLGDFGTVAYFAV
                     PTLTTAIYDSWLGYHDLGTASQIAIFMLLMIFLFLSLEQYSRRKQKSYQRGYEKKSAF
                     KFLTGWKLALALAWCWGLLALAFFIPFGRLLYWAYDYFEQAWNLDFVQFSLNSLKVSI
                     IASVITVLIALLLHFSKRLNTRKILVKNDRLSLQLASLGYAVPGTVLAIGLLSPLTFA
                     DHQLHAWLKSLELSPVGLIFSGSLFALVLAYTIRFLAMAIGSLETSLNKISPSLDMAS
                     QTLGKNGSAMLVKIHIPLIYKGILTAGLMVFIESMKELNASLLLRPFNFDTLATYVFT
                     FTSDEQLERAALPAIVLVLVGLLPVIWLTRSLISQSEKER"
     gene            8856..9866
                     /locus_tag="PXC99_001017"
     CDS             8856..9866
                     /locus_tag="PXC99_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5417482.1"
                     /translation="MSVLTINHLNLNFGSTKVLQNLHLAVNQNEIICLLGASGCGKTT
                     LLKAIAGLLPIEQGDIHLAGECLKSKAVEERQIGLIFQDYALFPHLTVADNIQFGLSK
                     LPKVQQKAITEKMLSVVHLQGFESRFPHELSGGQQQRVAIARALACQPELLLLDEPFS
                     NIDSQTRYAMIQEIKQILKSQNVPAIFVTHSKEEAFAFADKIAVMDQGKIIQFGKPNE
                     LYHSPVNPFVADFLGGTNYLNCNVTEDNVLCSPIGEFRLFPEMNVQKGRYRWLLRPEQ
                     IILKPNELGLGKVVGKLFLGLYYRYQVEIKGIEIVTYQSQELKIGEQVEVGFQVREFI
                     LF"
     gene            9876..10502
                     /locus_tag="PXC99_001018"
     CDS             9876..10502
                     /locus_tag="PXC99_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family oxidoreductase"
                     /protein_id="HDL5417483.1"
                     /translation="MKIEVWSDYACPFCYIGKRHLEQALAQFEGEVEVVFRAFELDPH
                     ANGEPEGDIQQRLMRKYQKTAEQADEMIRYVEQAGKQAGLDLRYRTTQYTRTFEAHRL
                     AKFAESKDLGEAMVERLFKAYFTDNTILAKRTELISLALDIGLERDEIAQLLTGDDFG
                     HEVREDERVAHKYGIHSVPFFVINEKLGVSGAQPPEILLDAIKQALQK"
     gene            complement(10564..12054)
                     /locus_tag="PXC99_001019"
     CDS             complement(10564..12054)
                     /locus_tag="PXC99_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF853 domain-containing protein"
                     /protein_id="HDL5417484.1"
                     /translation="MSLYQIARTETGKVISLNAKMANRHGLIAGATGTGKTVTLRKLA
                     ESLSDDGVPVFLVDVKGDLSGSVQAGNFSGKIAERILQFNLGGEDYLKGYPVSFWDVF
                     GTSGIPLRITISEMGPMLLSRLLNLNDTQGGLLNLVFRVADDRGLLLIDLKDLRALLK
                     FVADNAKEFQLEYGHISAASVGAIQRALLRLENEGADNLFGEPALDLHDWIQTRNGRG
                     VINMLNAEKLINSPRVYSAFLLWFMAELFENLPEVGDPEKPTFVLFFDEAHLLFDDAP
                     KALVDKIEQVVRLIRSKGVGVYFVTQNPLDIPDSVLGQLGNRIQHALRAFTPRDQKAV
                     KSAAETFRANKEVNVVEAITQLGVGQALVSVLDEKGMPTPVEIAYIYPPKSQLAPLAT
                     GERDSLVKQDDLYHHYSQYVDNESAFELLNAKAEAIKAEQAAAEEANNDFFGGILSSI
                     FGSKKKKDQSITEQVVSQVAHSVGRNLRNQVTKQIMRGILGAITKK"
     gene            complement(12113..13348)
                     /gene="rhlB"
                     /locus_tag="PXC99_001020"
     CDS             complement(12113..13348)
                     /gene="rhlB"
                     /locus_tag="PXC99_001020"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlB"
                     /protein_id="HDL5417485.1"
                     /translation="MSNHLTEHRFIDFPIHANVLNALDSKGFEFCTPIQAKTFPITLK
                     GKDIAGQAQTGTGKTLAFLIATFNHLLNNEIETSKNQPRALILAPTRELAVQIGADAE
                     LFLKHSDLKLALAYGGDGYDKQVQEIEKGVDILVGTTGRVIDYVKQGIINLDKIQVIV
                     LDEADRMFDLGFIKDIRYLMRKAPKPSERLTLLFSATLSAKVRELAYEDMDNAEYIEI
                     EPLQKTGHRIKEELFYPSNEDKMALLLTLLEEEWPERCMIFANTKHKCEEIWQYLSAD
                     GHRVGMLTGDIPQKKRLSLLDNFTKGNLDILVVTDVAARGLHIPDVTHVFNYDLPDDK
                     EDYVHRIGRTGRAGESGHSISFACERYAVNLPAIEEYIGHQIPVSQYDKESLLTLPKV
                     NRSRSKKTFLAKTKKNSRN"
     gene            complement(13436..14158)
                     /gene="recO"
                     /locus_tag="PXC99_001021"
     CDS             complement(13436..14158)
                     /gene="recO"
                     /locus_tag="PXC99_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HDL5417486.1"
                     /translation="MTIDQWQRAFVLHRREYSENSLLVEFFTEHHGRITLLAKGARRA
                     RSPLKAVLQPFTPLLLRWSGKGDLKTLTKAEPAALTLPMETLSLYSGFYINEVLARVL
                     ENQTAYPELFQHYLRCITELATQKQIEPILRTFEFHTLKALGYGVDFTHCAATGLPVD
                     PKMTYQFQENQGFIASLLQNNQSFLGSDLLAFAQLDFSEKSTQQAAKRFTRMALKPYL
                     GSQPLKSRELFQSILPNKLKSG"
     gene            complement(14388..15305)
                     /gene="era"
                     /locus_tag="PXC99_001022"
     CDS             complement(14388..15305)
                     /gene="era"
                     /locus_tag="PXC99_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013525392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HDL5417487.1"
                     /translation="MTEQIQTPAKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRK
                     AQTTRHRIVGIHTEDQYQAIYVDTPGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVE
                     GTKWTEDDEMVLNKLRSAKAPVLLAINKIDNIKEKEELLPHITELSQKFDFAEILPIS
                     AQRGKNVHILQKFVRQSLRQGEHHFPEEYVTDRSQRFMASEIIREKLMRFTGEELPYS
                     VTVEIEQFKMNERGVYEINGLILVERDGQKKMVIGAGGQKIKTIGIEARKDMERLFDN
                     QVHLELWVKVKAGWADDERALRSLGYMDE"
     gene            complement(15408..16082)
                     /gene="rnc"
                     /locus_tag="PXC99_001023"
     CDS             complement(15408..16082)
                     /gene="rnc"
                     /locus_tag="PXC99_001023"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HDL5417488.1"
                     /translation="MQLERLQKKLGYQFHNLDYLIQALTHRSAATKNNERLEFLGDSI
                     LNFTIGKVLYDKFPKANEGELSRMRATLVREQTLAIIARKFDLGDYLKLGPGELKSGG
                     FRRESILSDCVEAIIAAIYLDQDMAKAMEKVEDWYSDLLKDISPGDSQKDPKTRLQEF
                     LQGRKLPLPEYDVLDIKGEAHNQTFRVTCKVINVEEVFIGIGTSRRKAEQNAAEKALA
                     VVKTKK"
     gene            complement(16128..17087)
                     /gene="lepB"
                     /locus_tag="PXC99_001024"
     CDS             complement(16128..17087)
                     /gene="lepB"
                     /locus_tag="PXC99_001024"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HDL5417489.1"
                     /translation="MAQFMPIIFLGIIYGIWQWLDSMQLPNTISIILVALVIICGGFW
                     AFYKFSADPRRKQAIVLQQKRLGRELTAEEIAEIQPKSAVGEFFASLFGILFFVTVLR
                     SFLFEPFQIPSGSMEPTLRVGDFLVVNKFSYGIKDPIWQNTLIETGKPERGDVIVFKA
                     PAQPHVDYIKRVVAVGGDKIKYDFATQQLTVTKANGETKVFEYSEGKPNPEFFYHGEM
                     QVERTEKGNVTHQILNHPMAFNYAPYFYQQEGQAEGEWVVPQGYYFVMGDNRDNSEDS
                     RFWGFVPERNIVGKATFIWLSLDKKANEFPTGLRFSRMFTSIN"
     gene            complement(17174..18967)
                     /gene="lepA"
                     /locus_tag="PXC99_001025"
     CDS             complement(17174..18967)
                     /gene="lepA"
                     /locus_tag="PXC99_001025"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018345454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HDL5417490.1"
                     /translation="MQNIRNFSIIAHIDHGKSTLSDRLIQTCGGLSDREMEAQVLDSM
                     DLERERGITIKAQSVTLNYKAKDGEIYQLNFIDTPGHVDFSYEVSRSLAACEGALLVV
                     DAGQGVEAQTLANCYTAIEIDLEVVPILNKIDLPAAEPERVAEEIEDIVGIDAIDAVR
                     CSAKTGLGIEDVLEEIVKKMPAPEGDAEAPLQALIIDSWFDNYLGVVSLVRVKNGVLK
                     KGDKIKVMSTGQSYNVDRLGIFTPKQVDTTELKTGEVGWVVCAIKDILGAPVGDTLTH
                     HHNPATEVLPGFKKVKPQVYAGLFPISSDDYEAFRDALGKLSLNDASLFYEPETSSAL
                     GFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVVQTSGETIYVDSPSKLPA
                     INNIAEIREPIAECNMLVPQEFLGNVITLCVEKRGVQTNMVYHGNQIALTYEIPMGEV
                     VLDFFDRLKSTSRGYASLDYGFKRFQTADMVRVDIMINGERVDALAIIVHRANAAYRG
                     RELVEKMRELIPRQQFDIAIQAAIGNHVIARSTVKQLRKNVLAKCYGGDVSRKKKLLQ
                     KQKEGKKRMKSLGNVEVPQEAFLAILHVGKD"
     gene            19240..20469
                     /locus_tag="PXC99_001026"
     CDS             19240..20469
                     /locus_tag="PXC99_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--glyoxylate aminotransferase family
                     protein"
                     /protein_id="HDL5417491.1"
                     /translation="MQFREINPSPRLLMCPGPTDADPRVLRAMSAPILGQFDPEFTSL
                     MNETMEMERRLFQTKNEQTYVVNSTSRGGLETVLTAAICPGDKVLIPAFGRFGYLLNE
                     ILARSGADITIIEREWGTVFEPEEIEAELKKGGYKAVAIIHGETSTSMMQPLEEIGKI
                     CKQYDAMLIVDTVATLGGVDIRVDEWGIDACIGGTQKCISAPSGTALITYNKRIEEII
                     AKRKRVEKGIRAESDVDGTLPPIPSNYLDLAQLQDYWSPRRLNHHTETTSAQYGVHEA
                     LRIILQEGLEARFARHILNDKALCAGLEAMGLKIFGDRKHKAPVVTAFHIPEGMSGPA
                     LRSDILNHFGIELATSFGPLDGKVIRIGNMGFSSQKRNVLLTLGALEAVLLSHKVKVP
                     SGDAVAAALAVYKEADK"
     gene            20663..>21126
                     /locus_tag="PXC99_001027"
     CDS             20663..>21126
                     /locus_tag="PXC99_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5417492.1"
                     /translation="MPNFSFTHLYKKHTKELPTVTLLSALIGLSQVSYANPLPLGNTT
                     GTNNLAVGEGSFALGTGSQAIGKNAIATGGNISPQEFNVELENFRDLVNQIEELRTQI
                     AEQEKQGSVNQQLQDALKSQIAQYDTILERVREKQAQQAILANSVISMRKELV"
BASE COUNT         6236 a         4474 c         3894 g         6522 t
ORIGIN      
        1 ccagcatacc tttgtttctt caaaatatta ttaaggttat attctaatcg gttatttgct
       61 taagatcagc tttttagtga aagaatttaa ctatctattt caaaatataa agaattttgc
      121 tataaatagc acaatttcaa atccattaat tttactcaaa gctaaggagt cattatgcaa
      181 ttagtattta tccgtcacgg tttcagtgaa tggaatgcta aaaacttatt taccggttgg
      241 cgtgatgtta atttaacaga acgtgggatt gaagaagcaa aatctgccgg tcaaaaatta
      301 aaagcagccg gttttgaatt tgatattgcg tttacttcgg ttttaacccg tgcgatcaaa
      361 acttgtaaca tcgtattaga agaatcagac caattatgga tccctcaagt gaaaaactgg
      421 cgtttaaacg agcgtcacta cggtgcatta caaggtttag acaaaaaaga aactgctgaa
      481 aaatatggtg atgaacaggt tcacatctgg cgtcgttctt atgacatctc tccaccggat
      541 ttagacccac aggatccaaa ctcagcacat aacgaccgcc gttatgctaa cttaccaaaa
      601 gatttaattc caaatgcaga aaacctcaaa atcacccttg agcgtgtgtt accattctgg
      661 gaagatcata ttgcacctgc attaatttca ggtaaacgcg tattagttac tgctcacggt
      721 aactcattac gtgcattagc aaaacacatc gaaggcattt ctgatgcaga cattatggac
      781 ttagaaatcc caaccggtca gccattagtg tatgaactag atgacaactt aaaagtaatc
      841 agcaaacgtt acttataatt ggtaaatttc cgataaaaaa taaccgcttg tagtgcaaca
      901 cattacaagc ggttattttt tgttaatttt ttgcaaatgg caaagaacaa aaataaaggc
      961 gaatcataca ttcgccttat tgttttaaag tagattagaa atctaacaac tctttctctt
     1021 ttgctgctaa tacttcatca acttttttaa tgaaggtatc ggtgattttt tgaatatctt
     1081 cttcagcttt gtgttgttcg ttttcgctga tttctttatc ttttaataac gctttgattt
     1141 ggtcattagc atcacgacga acattacgaa ttgccacttt gccttgctca ccttctgctt
     1201 taacgatttt gattaaatca cgacgacgtt cttccgttaa tggtggaagc ggaacacgaa
     1261 tggttgtgcc ggcagaagat gggtttaaac ctaaatctga ggttaaaatt gctttttcta
     1321 ccgcagagat taaagattta tcaaatacgt ttaccgctaa agtacgggca tcttcagcta
     1381 ccacgttcgc tacttgacgt aatggagtcg cagagccgta atattccact tgaataccgt
     1441 ctaataaaga aggttgggca cgacctgtac gaattttcgc aatatgccct tttaaagcct
     1501 caaggctttt ttccatacga tcttgggtat ctttcttgat ttcgttaatc attgattttt
     1561 tatcctttta tttagtaact gagagttaaa cagagaaaat taattattca gaaatggttg
     1621 taccttcttc agtaccgaat accacattgc gtaacgcccc cggtttgccc atattaaaga
     1681 cacgaattgg cattccgtgg tcacgagcaa gcgtgaatgc tgctaagtcc attacttgta
     1741 attcttgctc aataacttgc gcatacgtta atttattata tagttttgca tctgcgtatt
     1801 ttgctgggtc tttatcataa acgccatcaa ctttagttgc ttttaatacc acatcagctt
     1861 caatttcaat accacgcaag caagcagctg aatcggtggt aaagaacggg ctacctgtac
     1921 cggcagagaa aatcaccaca cgtttttcac gcaacatttt aattgcttca gaccagttgt
     1981 aagtgtcgca aatcccattt aattggaacg cagacattaa tttagcattt acctctgcac
     2041 ggtgtaaggc atcacgcata gccaaaccgt tcattacggt ggcaagcata cccatatggt
     2101 cgcccactac acggttcatt cctgctttgg ctaattttgc accacggaat aagttaccgc
     2161 cgccaagtac cacaccaacc tcaacgcctt cagcaagtaa ttctttaatc tctaacgcca
     2221 tacgatccaa aatagacggg tcgataccaa aaccttcact gccttgtagg gcttcaccac
     2281 ttaatttgag aagaattcgc ttataaatag gtttgctcat tttaattgcc tcttaactgt
     2341 atggactaaa cacaaaatta cgttattata gaacaatcca atataacgat aaactaaaaa
     2401 tattcactac aatgaaatcc aaacaacttt tcggcattct tgtcgctatt tcgctggcaa
     2461 ctgctgctag ctgtttaatg ctaatcggat caggcttttt tccaaatccg agtatctttg
     2521 aagtcatttt gggcgtattc ctcatcatcg ctcttgccag ctctaaatgg acttattatt
     2581 tactcttact gccaatcagc atcgcttatg caatttatac cccggttggg ataaaattcg
     2641 gtaaaccgac ttacgagtat atcgcctcta tttttgctac cgatatgatg gaaagcaaag
     2701 agtttattgc tcaactgccg attttaaata ttgcggcggg cattgcgatt gtactagcgg
     2761 tcatttttta tcgaaaaatt accaatcgct atcaaatccg ttttttacgc aataaaacat
     2821 tcgtgatttc ggcttttgta ttaatgctgt tttcccttgc accgtttaaa ttttttcagg
     2881 agttctacaa ttcgagccta aaggtaaaga aagaattgga agtgctgaac aatttaacgc
     2941 tagattcaca atggggacaa tcaaccctca gctcaacttc aaactacgat gattatgtac
     3001 tgattatggg cgaaagtgcg agaaaggatt atcaccacgc ctatggctat ccggctgcca
     3061 atacgccttt tatgagttcg gcaaaaggaa ccttgattga cggtttaacc tccggtggca
     3121 caaacactat cgcctcatta cgcttaatgc tcactaagcc cgatacggaa aaatgggaag
     3181 caaattatgg gttaacctta attgatttaa tcaaatctac cggtatcaag acctattgga
     3241 tctcaaatca aggctatttg ggcaattacg atacgccgat ttcctctatc ggtaataaaa
     3301 gtgatgtcaa aattttcact aaagccggcg attcattaaa taccaatgtg agcgattttg
     3361 aattgttacc gcattttgct aaagtgattg aagaacctgc tcaagggaag cgtttcatct
     3421 ttctgcattt atatggctcg catcctatta cctgcgatcg tctcaccgat tacccgaaaa
     3481 tgtttgacga tgacaaactg ccaaaacgct actttaatgt aaattgctac gtgtcatcta
     3541 tcaagaaaac cgatgaattg ctgaaacggg tatatgattt gctagtgaaa aaccaagaaa
     3601 atcaccagcg ttcattctca atggtttatt tgtctgatca cggtttatcg cacgaggttt
     3661 caaaagagaa cattgttatc cacaatggaa aggatagaag taaattacac tacgatattc
     3721 cgctgtttaa aatttcaagc gatgataccc aacgtaatga gtataaagcc tttaaatccg
     3781 gcttaaactt cactaatggt attgcgaatt ggattggtat cgaaaatccg ttattagata
     3841 aagaaattaa tctttttaac gaacaaaacg ataaaagtga ttatgggcta aagaaaatca
     3901 ttgaaacgca gtctactgta gaagatccag ctgttcctat tcctgaaagc tacttatata
     3961 aagcgactaa ttagcaaaag taagtaacaa aaaagcaggc tttaagcctg cttttttagt
     4021 ttttagtatc agaaaaatta agcgttaccg ccagtgattt tcgctacttc tgctgcgaaa
     4081 tcttcttcta ctttctcaat accttcacct acttctaaac gaataaagtt agaaactgaa
     4141 gtatttactg attttaaata ttgacctaca gattgagatg gatccattac aaacggctga
     4201 ccggttaatg aaacttcacc ggtgaattta gccatacggc cttcaaccat tttttctgcg
     4261 atttcttttg gtttaccaga attcatcgca atttcaattt gaatttcacg ttcttttgct
     4321 actacatcag cagaaacatc ttctgggttt acaaattcag gtttgcttgc agcaacgtgc
     4381 attgctactt tcttaagctc atcttcagag cctgcacctg ctactaatac accaattttc
     4441 gcaccgtgta agtattgagc aataacttcg ccttctaagt attgaacacg gcgaatgttc
     4501 atattctcac cgattttcgc aactaatgcc gcacgttttt cttcaaattg tgcttgtaat
     4561 gcttcgatag ttgtaccttt atttgcaact gcaaaatcag caacttcgtt cgctaattct
     4621 aagaaaccgg catcttttgc aacgaagtca gtttcacagt tcatttcaac taatacgcca
     4681 aaacctgaag cgacacgagc aaggattaca ccttcagctg caacacgacc tgctttttta
     4741 gccgctttcg cttgaccgga tttacgcata ttatcgattg ctaattcaat atcaccgttc
     4801 gcttcaacta atgctttttt acattccatc atacctgcgc cggtacgttc acgaagttct
     4861 ttaactaatg atgctgtgat ttcagccatt ttaaattccc cttatttgat atggtaaaac
     4921 aggctctcac ctgcctagaa atttcattgt ttagggcagg ttaaaacctg ccccctcaac
     4981 tgaattattc cgcagaagct tcttctgcta cttcaacagt ttcaacaccg cgaccttctt
     5041 tgattgcagc aactgctgaa tctaagtaaa gttggatagc acgtgttgca tcatcgttac
     5101 cgggaatgat gtagttaacg ccatctggag ttgagttagt atcaacaatc gcaaataccg
     5161 gaatacctaa gttgtttgct tctttaattg cgatatgttc gtgatcagca ccgataacaa
     5221 aaattgcatc cggtaaaccg ttcatatctt tgataccgcc taagcttaac tctaattttt
     5281 ctaactcacg agtacgcatt aacgcttctt ttttagtgat tttgtcaaaa gtaccgtctt
     5341 gagtttgagt ttctaaatct tttaagcgtt tgattgattg acgaactgtt ttccagttag
     5401 tcaacatacc acctaaccaa cggtggttta cgtagaattg ttggctctct actgccgctg
     5461 ctttaacagc atcacttgct gcacgttttg taccaacaaa taatacttta ccattgttac
     5521 tagcaatgcg agttaattcc gctaatgctt cgttgaataa aggtaaagtt ttttctaagt
     5581 tgattacgtg aacaccatta cgagcaccaa agatgaatgg tttcattttt gggttccagt
     5641 aacgtgtttg gtgaccatag tgaacgcctg cgttaagcat atcgcgcata gaaacttgtg
     5701 ccataagaat tttccttcaa agttgtttgt tttgccactt atgaacggca aaacggggtt
     5761 tagcctccac atatcctaga aaatcaatct gttaaagaca ccccaattcc tagcttgtga
     5821 tatgtgtgtg ttttagtgtt aaaaaataaa tgtgtacgtt ttgcctgaat agacaaaaac
     5881 ggggcgtatt atgccaaaaa acaaacaatt tgccaattat tttattgctc tcttcgcatt
     5941 actaaatcaa gctcaaaaat aaaaaccgtt ctcattattg actaaaaaaa tggggaggtt
     6001 tagaatgtct ttcattctgt tatgaaaacc tgtctgaagg agactatcat gaaaaaaaca
     6061 ctttctgcac ttgctattgc tgcagccact tttacatcaa cttcaacgct tgctgcaaat
     6121 gaagtgaatg tttattctta ccgccagcct tacttaattg agccaatgct aaaaaacttt
     6181 gaaaaagata ctggcattaa agtaaacatc atcttcgctg ataaagggtt ggttgatcgt
     6241 gtaaaacaag aaggtgaatt aagtcctgct gatgtgcttt taacagtaga tatttcacgc
     6301 gtaatggaaa ttgttaacgc tgatcttgca caaaaaattg actctaaagt gttagaaaaa
     6361 aatattcctg cacaattccg tgactctaac gaccaatggt ttggtttaac cacacgtgct
     6421 cgtgttatct acacgtcaaa agatcgtgta ggtaaattac cagcaggctt tgactaccta
     6481 gatttagcta aaccagagta taaaggtaaa gtctgcgtgc gttcaggcaa aaactcttac
     6541 aatgtctcac tattcgcggc gatgatcgaa cattacggca ttgaaaaaac caaagcattc
     6601 ttagaaggct taaaagcgaa cttagcacga aaaccacaag gtggtgaccg tgatcaagta
     6661 aaagcaatta aagaaggcat ctgtgattac tctatcggta acagctacta ctacggcaaa
     6721 atgttagatg atgagaaaca aaaatcgtgg gctgaagcag cgattattaa tttcccgagt
     6781 ggtgaacacg gcacgcacaa aaacatcagc ggcgtagtta ttgcaaaaca ctcaccaaat
     6841 aaagcaaacg cggtgaaatt aattgaatac ctaagtggcg aaaaagcaca aggtttatat
     6901 gctgaactta accacgaata tccagtaaaa gaaggcatcg agccatcagc aatcgtaaaa
     6961 ggttggggta cgttcaaatc agataccatc aaacttgaag atatcgcaaa aaattacgaa
     7021 gccgcattaa aattagttga tgaagtgaaa tttgacgatt tctctgagaa aaaataatca
     7081 accgataagc ggtcattttt ccacaaaaat ttgcaaaatt ttgttaaaat acaaccgctt
     7141 gcaaaaggac gcattttgcg tccttttatt tttttatgaa ataacaggct taaagaaaaa
     7201 tgcgatcaca attttgctgg aaaagtattg ctgccctaac aacttttatc gttttgcttc
     7261 ctcttattgc aatttgctat cacgcattgc aaggggataa tgaaaacctt gctcaccttt
     7321 ggcaaacaat gttgccaatc tatcttaaaa actcaacttt attagtatta ggaaccgttt
     7381 tccttgcact gatttttgct ctgcctaccg cttggattgt ggcaaattac cgtttttggg
     7441 ggcaaagaac cttacaatgg ttactttgtt tgcctctcgc tatgcctgct tatttaattg
     7501 cctatttata taccgattta ttagattact caggtgcttt tcaaggctgg ctgcgtagta
     7561 tttttggctg gactcatccg caagattact ggtttcctca aattcgtaca ttgtatggtg
     7621 cttgctttgt gcttgcgtta gtactatatc catacatttt tttattagtg cgagttgcct
     7681 tattagaaca atctgaaaac ttaacacaca gtgcaaaaat gctcggggct tcgccctctc
     7741 agttgttccg tcgaattacg ctgccattaa ttcgaccttc tgttgccgta ggcattgcat
     7801 tagtggcaat ggaaacgctt ggcgatttcg gtactgtggc ctattttgcc gtgccaacac
     7861 ttactacggc aatttatgat tcgtggctag gctatcacga tcttggtact gccagccaga
     7921 ttgcgatctt tatgttgcta atgattttcc tgtttttaag tttagagcaa tatagtcgcc
     7981 gtaaacaaaa aagctatcaa cgtggctatg aaaagaaatc agcctttaaa tttttaactg
     8041 gttggaaatt agcattagcc cttgcttggt gctggggttt attggcgtta gcctttttca
     8101 ttccgtttgg caggttgctc tattgggcat acgactattt cgagcaagcg tggaatttag
     8161 actttgtcca attttcgctt aatagtttga aagtatcgat catcgcctcc gtgataacgg
     8221 tactgattgc tctacttctg catttttcta aacgtttgaa tacccgcaaa attttagtca
     8281 aaaatgaccg cttgtcatta caacttgcct cactgggcta tgcggttcct ggcacagtat
     8341 tagcgatcgg tttactttcg cctttaacat ttgccgatca tcaactccat gcttggctaa
     8401 aaagccttga attatcaccc gttggattga ttttttcagg ctcactcttt gcattagtat
     8461 tagcttatac catccgattt ttagcaatgg caattggcag ccttgaaact tcgctaaata
     8521 aaatctctcc atcgctggat atggcgagcc aaacgcttgg taaaaatggc tcagcaatgt
     8581 tagtaaaaat tcatatccct ttaatttata aaggtatttt aactgcagga ttaatggtct
     8641 ttattgagag tatgaaagag ctaaatgctt ctctgctact tcgcccattt aattttgata
     8701 cactcgcaac ctatgtgttt acctttacat cagacgagca gcttgagcgt gctgctctgc
     8761 ctgccatcgt attggtgtta gtcggtttac tgcctgttat ttggcttacc agatccctta
     8821 tttcgcaatc tgaaaaagaa agataaagga attttatgtc tgttttaact attaatcatc
     8881 tcaacctcaa tttcggcagt acaaaggttt tacaaaatct ccatcttgct gtgaatcaaa
     8941 atgaaattat ctgtttgcta ggtgcaagtg gctgtgggaa aactacactg ctcaaagcca
     9001 ttgcaggttt attgccaatt gagcagggag atattcattt agcgggtgaa tgcctaaaaa
     9061 gtaaagccgt ggaagagcga caaatcgggc tgattttcca agattacgct ctttttccac
     9121 acttgacggt agccgataat attcaatttg gcttatccaa attgccaaaa gtacaacaaa
     9181 aagcaattac cgaaaaaatg ctttcagttg tgcatttaca aggctttgaa agccgttttc
     9241 cacacgaact ttcgggcggg caacaacagc gtgtcgctat tgcccgagca ttagcctgcc
     9301 agccagaatt gctactgtta gatgagccgt tttccaatat tgacagccaa actcgctatg
     9361 caatgattca agagatcaag caaatcttaa aaagccaaaa tgtgcccgct atttttgtaa
     9421 cccatagcaa agaagaagcc tttgcatttg ccgataaaat tgccgtgatg gatcaaggga
     9481 aaattattca atttggtaag ccaaacgagc tataccattc tccagttaat ccatttgtgg
     9541 cagatttttt aggtggcaca aactatctta actgtaatgt aacggaagac aacgtgttat
     9601 gcagccctat tggcgagttc cgactcttcc ctgaaatgaa cgttcagaaa gggcgttacc
     9661 gttggcttct tcgcccagaa cagattatct taaaacccaa tgagctaggt ttaggtaaag
     9721 tggtaggcaa actgttttta ggcctatact accgctatca ggttgaaatt aaaggcattg
     9781 agatagtaac ttaccaatct caagagctga aaattggcga acaagtggaa gtgggcttcc
     9841 aagtaagaga gtttatccta ttttaaggag aatatatgaa aattgaagtt tggtcagatt
     9901 atgcctgccc gttttgttac atcggcaaac gccacttaga gcaagcccta gcccaatttg
     9961 aaggcgaggt tgaagtggtt ttccgagcct ttgagcttga tccgcacgct aacggcgaac
    10021 cggagggcga tattcagcaa cgcctaatgc ggaaatatca aaaaaccgca gaacaagctg
    10081 atgaaatgat tcgttatgtg gaacaagccg gcaaacaagc tgggctagat ttgcgttacc
    10141 gcaccaccca atacactcgc acctttgaag ctcatcgctt ggcgaaattt gcagaaagta
    10201 aagacttagg cgaagcaatg gttgaacgtt tattcaaagc ctattttacc gataacacta
    10261 ttctagctaa acgcacagag cttatcagtt tagccttaga cattggctta gagcgtgatg
    10321 aaatcgctca actgctcaca ggtgatgatt tcgggcacga agtccgtgaa gatgagcgag
    10381 tcgctcacaa atatggcatt cacagcgtac cgttttttgt gatcaatgaa aaactcgggg
    10441 tatccggggc tcaaccgcca gaaatattac ttgacgctat caaacaggca ttgcaaaaat
    10501 aatccgaaaa aagaccgctt gttaagctaa acaagcagtc ttattcttct tataatttac
    10561 aatttatttt ttggtgatcg cacctaaaat accacgcata atttgtttgg tgacttggtt
    10621 gcgtaaattt ctgccaactg aatgcgccac ttggctaacc acttgttcgg taatcgattg
    10681 atcttttttc ttcttcgagc caaaaatgga agagagaata ccgccaaaga agtcattgtt
    10741 tgcttcttct gccgcagcct gctctgcttt aattgcttct gctttcgcat taagtaattc
    10801 aaacgcagat tcattatcga catattggct gtagtgatga tagagatcat cttgcttcac
    10861 taaactatca cgttcgcctg tggctaatgg agctaattgg ctttttggtg gatagatata
    10921 ggcaatttct acaggcgttg gcataccttt ttcatctagc accgaaacca acgcttgccc
    10981 cacaccaagt tgcgtgatgg cttctaccac atttacctct ttattcgctc ggaaagtttc
    11041 cgctgctgat tttaccgctt tttgatcacg tggcgtgaaa gcacgcaaag cgtgttggat
    11101 acgattgcca agctgcccta atactgaatc aggtatgtcc aacggatttt gcgtaacaaa
    11161 ataaacaccc accccttttg agcgaattaa acgaaccacc tgttcaattt tatccaccaa
    11221 tgccttaggg gcatcgtcaa acaataaatg agcttcatca aagaataaaa caaacgtcgg
    11281 tttttctggg tcgccaactt ctggcaaatt ctcaaagagc tctgccataa accaaagcag
    11341 gaatgcactg tacactcttg gtgagttaat taatttttct gcattcaaca tattgattac
    11401 accacgccca ttacgggttt ggatccaatc gtgcaaatct aatgcaggct caccaaataa
    11461 attatctgcc ccttcatttt caagccttaa taacgcacgc tgaatagctc caacgcttgc
    11521 tgcagaaata tgcccatatt ccagttggaa ttctttcgca ttatctgcga caaatttaag
    11581 caacgcacgc aaatctttta aatcaattag caataaacct ctgtcatctg ccacacgaaa
    11641 aacgagattt aacaagcctc cttgggtatc gtttaaattg agtaaacgag aaagtaacat
    11701 cggtcccatt tcggaaatag tgattcgaag tgggatacct gatgtaccaa atacgtccca
    11761 aaacgaaact ggatagccct ttaagtaatc ttctccccct aaattaaact gtaaaatgcg
    11821 ttctgcaatt tttcctgaaa aattacccgc ttgtaccgag cccgaaagat caccttttac
    11881 atctactaaa aatactggca cgccatcatc actcaaagat tctgccaatt tgcgtaaagt
    11941 aaccgtttta cctgtacccg tagccccagc aattaaaccg tgccgatttg ccattttggc
    12001 attaagcgaa ataactttgc ctgtttctgt tcgagcaatt tgatacaaac tcatctttca
    12061 ttctcttaaa ggtaaattaa ttttttgttc tcatcatata aaaatttatc acttaattac
    12121 ggctattctt tttcgttttt gccaagaacg tttttttact tcttgagcgg ttcactttcg
    12181 gtaaagtcag taaggattcc ttgtcgtatt gactcacagg aatctgatgc ccaatatact
    12241 cttcaattgc aggcaaatta accgcataac gctcgcaagc aaaactaatt gaatggccgc
    12301 tctcccctgc tcgccccgtt ctaccaatac gatgaacgta atcttcttta tcatcaggca
    12361 gatcataatt gaaaacgtgc gtgacatctg gaatatgcaa tccacgagcc gcaacatctg
    12421 ttaccactaa aatatccaaa ttgcctttgg tgaaattatc cagcaaagaa aggcgttttt
    12481 tctgcggaat atcgccggtt agcattccaa cccgatgtcc gtctgccgat aaatactgcc
    12541 agatctcttc gcatttatgc ttggtgttgg caaaaatcat acaacgctcc ggccactctt
    12601 cctcaagcaa tgtcagcaac aatgccattt tgtcttcatt cgaggggtaa aatagctctt
    12661 ctttaatacg atgtccggtt ttttgtagtg gctcaatttc aatatattcc gcattatcca
    12721 tatcttcata ggcaagttcc cgcacttttg ccgaaagcgt tgccgaaaag agcaaagtta
    12781 aacgttctga aggcttaggt gcttttcgca ttaaataacg gatatcttta ataaaaccaa
    12841 gatcaaacat tcgatctgct tcatctagca caatcacttg aattttgtct aaattgataa
    12901 tgccttgttt tacatagtca atcactcgac ctgttgtacc gacaagaata tctacccctt
    12961 tttcaatttc ttgaacttgt ttgtcgtaac catcaccacc gtatgccaaa gctagtttta
    13021 aatcagaatg ttttaaaaac agctcggcat ctgccccaat ttgaaccgcc aattcacggg
    13081 ttggagcaag aattaatgct ctcggctgat tttttgacgt ttcgatttcg ttattcaata
    13141 aatggttaaa agttgcaatc aaaaaggcaa gcgttttccc tgtacctgtt tgagcttgcc
    13201 ctgcaatatc tttgcctttc agcgtaatcg gaaaggtttt tgcctgaatc ggcgtacaaa
    13261 attcaaagcc tttgctatca agggcattta gtacattagc gtgaatcggg aagtcaataa
    13321 agcggtgttc ggtaagatga ttagacatag tatttccttg ataattgtga tgtgacaagc
    13381 ggtctttttt acacattttt ttgcaaaata gcatattggg cgttttttct caaatttaac
    13441 cgcttttgag tttattcggc aaaatagatt ggaaaagctc tcggcttttc agcggttgtg
    13501 accctaaata gggctttagt gccattcggg taaaacgttt cgctgcttgt tgagtacttt
    13561 tttctgaaaa atccaactga gcaaacgcta ataaatcact gcctaaaaag ctctggttat
    13621 tctgtaataa tgaggcgata aagccctgat tttcctgaaa ttgataggtc attttcggat
    13681 caactggcaa accggttgcc gcacagtgcg taaaatccac cccataaccc aatgctttta
    13741 acgtatgaaa ttcaaaggtg cgtaaaatcg gctcaatctg tttttgtgtg gcaagctcgg
    13801 taatgcaacg taaataatgc tgaaataatt cagggtaagc ggtctgattt tccaatactc
    13861 ttgcaagtac ctcgttgata taaaacccac tataaagtga aagcgtttcc atcggcaacg
    13921 ttaatgcagc cggttctgct ttggttaaag ttttcagatc ccctttaccc gaccaacgca
    13981 acaacaacgg cgtgaacggc tgtaaaaccg ctttcaacgg cgagcgagcc cgccttgcac
    14041 ctttagcaag taaagtaatc cgcccgtgat gttcggtaaa aaactccact aataaactgt
    14101 tttcgctgta ttcacgccga tgaaggacaa aggctcgttg ccattggtct attgtcataa
    14161 tttcttgtta attatgaggt tgtaatttac ttctgccaaa tctccccctc ccctctttgc
    14221 taaagagggg agatcttgca gagtatattt taaagtcatt ttcactattt aaccttttat
    14281 atagatagga agatgaattt aaaatttctg gagaactagt ccccctcttt agaaaagagg
    14341 ggttagggga gatttgatta cgatattaat gctataacgg gagccaacta ctcgtccata
    14401 taccctaaac ttctcaatgc tctttcatca tccgcccaac cagcttttac tttcacccaa
    14461 agctcaaggt gcacttggtt gtcaaatagg cgttccatat cttttcgagc ttcaatgccg
    14521 atggttttga ttttttgccc ccccgcacca ataaccattt ttttctgacc atctcgttct
    14581 actaaaatca agccattgat ttcatacacc ccacgctcat tcattttaaa ttgttcgatt
    14641 tctaccgtta ccgaataagg taactcttca cctgtaaaac gcattagttt ttcacgaata
    14701 atttctgatg ccataaagcg ttgagagcgg tctgtcacat actcttcagg aaagtggtgc
    14761 tcaccttgac gcagtgattg acggacaaat ttctgtaaaa tatgcacatt tttaccccgt
    14821 tgtgccgaaa ttggcagaat ttcagcaaaa tcaaattttt gtgaaagctc ggtaatatgc
    14881 ggcagaagtt cttctttttc cttgatgtta tcaattttat tgattgccaa taaaacaggg
    14941 gcttttgccg aacgcaattt gtttaacacc atttcatcat cttctgtcca ttttgtgcct
    15001 tccacaacaa agatgatgag atctacatcg ccaatagcag aacttgctgc acggttcatt
    15061 aaacgattaa tcgcacgttt ttcttctatg tgtaagcctg gggtatctac ataaatcgct
    15121 tggtattgat cttcagtgtg aataccaaca atacgatggc gagtcgtttg agctttgcgt
    15181 gaggtaatgg aaattttttg tcctaaaatc ttatttaata atgttgattt ccctacattt
    15241 gggcgaccaa caatcgcaat aaaaccacaa taggtttttg caggagtttg aatttgttct
    15301 gtcattttgt tttcctttca ttctgtggaa tgaatttgat ggtgcaagcg tccacgcttg
    15361 taccatttaa ttaaatcttt agcacaagcg aggacgcttg cgctatctta ctttttcgtt
    15421 ttaaccaccg ctaacgcttt ttctgcggca ttttgttcgg cttttcggcg gctggtgcca
    15481 atgccgataa acacttcctc gacgttaatc actttacagg ttacacggaa agtttggtta
    15541 tgagcttcgc ctttaatatc taatacatca tattcaggca atggcaattt tctaccttgt
    15601 aaaaactctt gcaggcgggt ttttggatct ttttgtgaat cgcctggact gatatcttta
    15661 agcaaatctg aataccaatc ttccaccttt tccattgctt ttgccatatc ttgatcgaga
    15721 taaatggccg caataatcgc ttcaacacag tccgataaaa tcgattctcg gcgaaaacca
    15781 ccacttttta gctctcctgg acctaatttt aggtagtcgc ctaaatcaaa tttgcgagca
    15841 ataatcgcta gagtttgctc acgcacaaga gttgctctca tacggctaag ctcaccttca
    15901 ttcgcttttg gaaatttgtc gtataatact ttaccaatag taaaatttaa aattgaatcg
    15961 cctagaaatt caagacgctc attgtttttg gttgccgcac tgcggtgtgt taaggcctga
    16021 atgaggtaat caaggttatg aaattgataa cctaattttt tctgtaatcg ttctagttgc
    16081 atagtttatg tgaataaagg ggcgtatctc atacgcccct gttaagatta attgattgag
    16141 gtaaacattc tagaaaaacg aagccccgtt gggaattcat ttgctttttt atctaaactt
    16201 aaccaaataa aagtggcttt accaacgatg tttctctcag gcacaaagcc ccagaaacga
    16261 ctgtcttcac tgttatcacg gttatcaccc atcacaaaat agtatccttg tggcacaacc
    16321 cattcacctt ctgcttgccc ttcttgttgg tagaaataag gtgcatagtt aaatgccatt
    16381 gggtgattta aaatttgatg agttacatta cctttttcag tgcgttctac ctgcatttca
    16441 ccgtgataga aaaactcagg atttggcttg ccttcgctgt attcaaatac ctttgtttcg
    16501 ccattggctt tagtaaccgt taattgctga gttgcaaaat catatttaat tttatcacca
    16561 cctactgcca ccacacgctt aatataatca acgtgtggtt gtgccggtgc tttgaataca
    16621 atcacatcgc ctcgttctgg tttgcccgtt tcaatcaagg tgttttgcca gataggatct
    16681 ttaatgccgt agctgaattt atttacgact aaaaaatcgc ctacacgcaa ggttggctcc
    16741 attgaaccac ttggaatttg aaacggttca aataagaacg agcgaagtac tgtaacaaag
    16801 aataaaatgc cgaaaagtga ggcaaaaaat tcgcctactg cggatttagg ttgaatttcc
    16861 gctatttctt cagcggttaa ttctctgcct aaacgttttt gttgtagaac aatcgcctgt
    16921 ttacgtcttg ggtcagcact gaatttgtaa aacgcccaaa atccaccaca aataataacc
    16981 aaggcaacta aaataatgga aatagtattt ggcagttgca ttgaatcaag ccattgccaa
    17041 ataccataaa taatacctag aaaaataatt ggcataaatt gtgccactga atgctccttt
    17101 ttattcaaaa ttgcaaagtt ttctcaaaat atgaccgctt gcaagcggtc gtattttaca
    17161 cgaatattga caattaatcc ttacccacat gaagaattgc caaaaatgct tcttgtggca
    17221 cttctacgtt accgagagat ttcattcgtt ttttaccctc tttttgtttt tgtagcagtt
    17281 tcttcttacg acttacatca ccaccgtaac attttgctaa tacgttttta cgcaactgtt
    17341 ttaccgttga gcgagcaatg acgtggttac caattgccgc ttgaatagcg atgtcaaatt
    17401 gttggcgtgg aataagttca cgcatttttt ccactaattc acgtccacga tacgccgcat
    17461 ttgcacggtg aacgataatc gccaacgcat caacacgctc gccgttaatc ataatatcca
    17521 cacgcaccat atcagccgtt tggaaacgtt taaaaccgta atcgagtgaa gcataaccac
    17581 gagaggttga ttttaagcgg tcgaagaagt ctaacactac ttcgcccatt gggatttcgt
    17641 aagttaaggc gatttggtta ccgtgataga ccatattggt ctgtacgcca cgtttttcca
    17701 cacaaagggt aatcacgttg cctaggaatt cttgtggcac aagcatatta cattctgcaa
    17761 tcggctcacg aatttctgca atattgttga ttgctgggag tttcgatggg ctatccacat
    17821 agatcgtttc gccactggtt tgcaccactt cgtaaactac ggtcggagcg gtagtaatca
    17881 aatcaagatc gtattcacgc tctaaacgct cttgaatgat ctccatatgc aacaagccta
    17941 agaagccaca ccggaagcca aagcccaacg cacttgaagt ttctggctca tagaacaatg
    18001 acgcatcatt taggcttaat ttgcctaaag catcacggaa ggcttcgtag tcgtctgaac
    18061 taatcggaaa taaccctgca taaacctgtg gttttacttt cttaaagccc ggtaatactt
    18121 cagttgctgg gttgtggtgg tgggttaatg tatcgcccac tggtgcccct aaaatatctt
    18181 taatcgcaca aactacccaa cctacttcac ctgtttttag ctcggtagta tccacttgtt
    18241 ttggcgtgaa aataccaagg cgatctacat tgtaagactg ccctgtactc atcactttaa
    18301 ttttatcgcc ttttttcagc acgccatttt tcacacgcac taaagacaca acgcctaaat
    18361 agttatcgaa ccaagagtcg ataattaacg cttgtaatgg tgcttccgca tcgccttctg
    18421 gtgcaggcat tttcttcacg atttcttcta aaacatcttc aatgcctaaa cctgttttag
    18481 ctgaacagcg tactgcatca atggcatcaa tgccgacaat atcttcaatc tcttctgcca
    18541 cacgctcagg ctcggctgct ggtaaatcga ttttatttaa aattggcaca acctctaaat
    18601 ctatctcaat tgcggtataa caattcgcca acgtctgtgc ttccaccccc tgccctgcat
    18661 caaccactaa taaagcacct tcacaagcag caagcgagcg agaaacttca tatgagaaat
    18721 ccacgtgccc tggcgtatca ataaagttga gctgataaat ttcgccatct ttcgctttat
    18781 agtttaaggt tacactttgt gctttaatag taattccacg ctcacgctca agatccattg
    18841 aatctaatac ttgagcctcc atttcacgat ctgataagcc accacaagtt tgaattaagc
    18901 ggtctgataa agtcgatttg ccgtgatcga tatgagcgat aatcgaaaag ttacgaatat
    18961 tttgcatttt catcgggcag ttaatgtcct gttttgttat ttgtttatca aaaattaatc
    19021 ggggaattgt acttgaaata caaggttttg caaagaaaac aaatagcaat aagcggttat
    19081 tttttcctaa aaatgtgcaa atttcttgag aaaaatgacc gcttgcactc accctaattg
    19141 caaataattt ctctaaaata taaaaaacat tgagcaatca caaattttta ttatagaatc
    19201 cataagtttt tttaattcat tcaattatag gaaataatta tgcaattcag agaaattaat
    19261 ccctcccctc gtttattaat gtgccctggc ccaacagatg ctgacccacg tgttttgcgt
    19321 gcaatgtctg cacccatttt agggcaattt gaccctgagt ttacctcatt aatgaatgaa
    19381 acaatggaaa tggaacgccg tttattccaa accaaaaatg agcaaactta tgtagtcaac
    19441 tccacctctc gtggtggctt agaaactgtt ctaaccgcag cgatttgccc aggcgataaa
    19501 gtgttaattc ctgcatttgg tcgttttggt tatttattaa atgaaatttt agctcgtagc
    19561 ggtgcagata ttaccattat cgaaagagag tggggaaccg tatttgaacc agaagaaatt
    19621 gaagcagagt tgaaaaaagg cggctataaa gcagttgcta ttattcacgg cgaaacctca
    19681 acctctatga tgcaaccgtt agaagagatc ggcaaaatct gtaaacaata tgatgcaatg
    19741 ttaattgtag ataccgttgc aaccttaggc ggtgtagata ttcgtgtgga tgaatggggc
    19801 attgatgctt gtatcggcgg tacacaaaaa tgtatttccg ccccatcagg cacagcttta
    19861 atcacttata acaaacggat tgaagagatt attgcaaaac gtaaacgtgt ggaaaaaggc
    19921 attcgtgcag agtctgatgt agatggcaca ttaccgccaa ttccaagtaa ctacttagac
    19981 ttggcacagc tacaagatta ctggagccca cgccgtttaa atcaccacac agaaaccact
    20041 tctgcacaat atggtgtaca cgaagcgtta cgcattattt tacaagaagg cttagaagct
    20101 cgttttgctc gccatatttt aaacgacaaa gcattatgtg caggtttaga agcaatgggt
    20161 ttgaaaattt ttggcgatcg caaacataaa gcccccgttg taacggcatt ccacattcca
    20221 gaaggtatga gtggcccagc attgcgtagt gatattttaa accacttcgg tattgaatta
    20281 gccacctcat tcggcccctt agatggaaaa gtaatccgta tcggtaatat gggtttctca
    20341 agccaaaaac gtaacgtact tttaacctta ggtgcgttag aagccgtact tttaagccat
    20401 aaagtaaaag tgccttcagg cgatgcggtt gcagctgcct tggcagtcta taaagaggct
    20461 gataaataac caccttccta aatttacaat acaactcact aataattaat actgtggata
    20521 tttatccaca gtaaaaccac agaaactcaa aatattttca caaatttaat cttttcctat
    20581 ttcatttaat caaattaaat attatgacac ggagcatttt tttaagaatg aaaagtaaaa
    20641 gttttaatga ggaaattttg atatgccaaa ctttagtttc acccatctgt ataaaaaaca
    20701 cacaaaagag ctccctactg ttaccttgct tagcgctctg atagggctta gccaagtctc
    20761 ttatgccaat ccacttcctt taggcaacac cactggcacc aataaccttg ctgtaggtga
    20821 aggtagtttt gcgttaggca caggttctca agcaatcggc aagaatgcca ttgcaaccgg
    20881 tggtaatatc tccccccagg aattcaatgt ggagttagaa aacttccgtg atttagttaa
    20941 tcaaattgaa gagttacgta ctcaaattgc tgaacaagaa aaacaaggct ctgttaatca
    21001 acaattacaa gatgctttaa agagtcagat tgctcaatat gacactattt tagagcgtgt
    21061 acgtgaaaaa caagcacaac aagcaatatt agccaatagt gttatatcaa tgcggaaaga
    21121 attagt
//
LOCUS       DANLVT010000032        21104 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.032, whole genome shotgun sequence.
ACCESSION   DANLVT010000032 DANLVT010000000
VERSION     DANLVT010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 21104)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21104)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21104
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.032"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            117..593
                     /gene="greA"
                     /locus_tag="PXC99_001028"
     CDS             117..593
                     /gene="greA"
                     /locus_tag="PXC99_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HDL5417493.1"
                     /translation="MKQIPMTVRGAEQLREELDFLKNVRRPQIIDAIAEAREHGDLKE
                     NAEYHAAREQQGFCEGRIQEIEGKLGNAQIIDVTKMANNGKVIFGATVQLVNADTDEE
                     VTYRIVGDDEANIKEGLISVNSPIARGLIGKEVDDSVSITTPGGKVEFDIVGVEYI"
     gene            complement(649..1065)
                     /gene="ndk"
                     /locus_tag="PXC99_001029"
     CDS             complement(649..1065)
                     /gene="ndk"
                     /locus_tag="PXC99_001029"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HDL5417494.1"
                     /translation="MIQQTLSIIKPDATRRNLIGKILAQLEENGLTIKALKKVHLTRE
                     QAEGFYAEHKGKDFFEPLVEFMTSGSIVVSVLEGENAISHYRALMGATNPDNREKGTI
                     RDLYALSMRENSVHGSDSEESAKREIAYFFVPSEIV"
     gene            complement(1075..3153)
                     /gene="metG"
                     /locus_tag="PXC99_001030"
     CDS             complement(1075..3153)
                     /gene="metG"
                     /locus_tag="PXC99_001030"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HDL5417495.1"
                     /translation="MANQKRKMLVTCALPYANGAIHLGHMLEHIQADIWVRFQRMRGN
                     EVHFVCADDAHGTPIMLNADKLGITPEQLIEKAKADHEADFASFNISFDNYHSTHSEE
                     NRQITTDIYKTLKANGFIKSKVISQLFDPEKNMFLPDRFVKGTCPKCKAEDQYGDNCE
                     VCASTYSPMDLINPRSAVSGATPVVKESEHFFFDLPSFEGMLKEWTRSGSLQPEIANK
                     MQEWFESGLQQWDISRDAPYFGFEIPDAENKFFYVWLDAPIGYIASFKNLCDRAGIDF
                     DEFWQKDSTTELYHFIGKDIVYFHSLFWPAMLEGSGYRKPTNVFAHGYVTVDGAKMSK
                     SRGTFIQANTYLKHLDPECLRYYYAAKLNDRIEDLDFNLDDFVQRVNSDIVNKLVNLA
                     SRNASFIAKRFEGKLAEKLDDEALFNEFTAQAETIANFYENREFNKAIRAIMELTDKA
                     NKYIDDKAPWVIAKEEGKEAELQAVCSMGIELFRVLMSYLKPVLPKLAERAEAFLQSE
                     LRWDNIATPLFGHTVAPFKSLFSRLEKKQIDAVIDETKALFAEANKKTENQTKGTQKV
                     EQQAVEKQENIAVEPISPEITIDDFAKLDLRAAKVLNCEAVPKSDKMLRFELDLGDHQ
                     RQVFSGIKAAYPNPEALIGRFVIVIANLAPRKMSFGMSEGMILSAGTGGANLFLLDAD
                     SGVQPGMQVK"
     gene            3365..4336
                     /gene="menC"
                     /locus_tag="PXC99_001031"
     CDS             3365..4336
                     /gene="menC"
                     /locus_tag="PXC99_001031"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HDL5417496.1"
                     /translation="MRQVKLYRYQLPIQTGVVLRKQPLKERQGVLVCLQEQEKVGWGE
                     IAPLPSFSQESLEQAENQAVNWLKAWQKGEPETLEQLFPSVAFGLSCALAELNNELGE
                     QANNQSAVLCYGDLEKLHTAFSQHTNPIGKIKIGLNPEQEGEQANLLLHTFPNLRLRL
                     DANRLWSLEQAVKFAEKIANEHKPRIQFIEEPCQALELSRQFATQTDIAIAWDETVRE
                     ANFLVKKEPNLTAIIIKPTLVGSLEKCVNLIQQAQKQGLVAVISSSLESSLGLTQLAR
                     IAQQYTPNSVPGLDTLNLMQHQLLRDWHDSSLPLVGLESEFVREVVV"
     gene            4581..5282
                     /gene="rsuA"
                     /locus_tag="PXC99_001032"
     CDS             4581..5282
                     /gene="rsuA"
                     /locus_tag="PXC99_001032"
                     /EC_number="5.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA pseudouridine(516) synthase RsuA"
                     /protein_id="HDL5417497.1"
                     /translation="MRLDKFIAENTGLTRSQAAKVLKSGVVTVNGNIEKSGAAKISQE
                     DEIYYEDQKLEWVEEGQYFMLYKPQGYICSHDDGEYPTVFQFFDYPLMTKLHTAGRLD
                     VDTTGLVLLTDDGKWSHRITSPKHHCEKTYLVTLADPVEDFYAQRLAEGILLRGEKEP
                     TLPAQLEILDDYNVNLTISEGRYHQVKRMFAALGNKVEALHRWRIGDVVLDERLEEGE
                     FRSLTSEEIASFNGK"
     gene            5272..6453
                     /locus_tag="PXC99_001033"
     CDS             5272..6453
                     /locus_tag="PXC99_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bcr/CflA family multidrug efflux MFS
                     transporter"
                     /protein_id="HDL5417498.1"
                     /translation="MESRRPSLSFFIILGMMAMLPPLAIDMYLPSFLDIARDLAVSQE
                     KVQTTLAVFTLGFGAGQLFWGPMADSFGRKIIILIGLVGSAIAAYFLTQVQNIETFYL
                     LRLVQGLCAAAPAVVLGALVRDLFERNLFAKLMSVIMIISMLAPLLAPIVGGYIAKYF
                     HWHSIFYVLVAMGILCVVLISWKIPETLAPEKRLPLSFGKTLSNFAILLKHRPTLGYV
                     LIGGLTFAGIFCFLTSGSIVYIGLYGVSQENFGYFFGLNMIVMVTMTAINSKMVVKVG
                     SETMLRIALAMQLLAGIWLALVAIFDLGFWAMAIGIPLYIGMLSTIGSNASAAILEQF
                     PQMAGTANGVAGTARFGVASLVGAGLSHIAVTSAAPMLLAMALCVMLAGVVYYFLCYK
                     R"
     gene            complement(6593..7912)
                     /gene="rlmD"
                     /locus_tag="PXC99_001034"
     CDS             complement(6593..7912)
                     /gene="rlmD"
                     /locus_tag="PXC99_001034"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HDL5417499.1"
                     /translation="MAIFYSEKSAKKPIKSPACQKATIQSLDYQGLGIAKINGKTWFI
                     ENALPDEQVEFKVLEEKRQYGRGQAVKILKKSANRRMPSCELYGQCGGCQMQHISLEL
                     QRKAKQQALFQRLQKLQTHAIDVQPMIIGNDKHYRRRAKLSIAIQQGKAVIGFRLQNS
                     NQIIPLAHCEVLVEPLANLLPKLKHLIENWQQPKKLGHIELVSADNTIALFFRHLGAL
                     SAQDNHNLRQFATQEQLSLFVMTSENHIEHLCGERPYYQIQGLKLHFSIRDFIQVNAT
                     LNEKMVEKALEWLELSNQDRVLDLFCGMGNFTLPIAERAKSVVGVEGVEPMVQQAREN
                     AVTSGLKNVEFYQTNLDEPFSDKPWAKEPFNKVLLDPARNGALFCLDHLTSLNPERIV
                     YVSCNPATLVRDAEKLLQLGYRLEKAAMIDMFPHTGHLESISLFLKS"
     gene            7997..9322
                     /locus_tag="PXC99_001035"
     CDS             7997..9322
                     /locus_tag="PXC99_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase
                     family protein"
                     /protein_id="HDL5417500.1"
                     /translation="MISSVWNERYLADKKREQDHRSPFQRDRARLLHSEAFRCLQAKT
                     QIHAVGEDDFYRTRLTHSLEVAQIGSSLREKLLADVEGFQAVCSEQEFAKNMANLTAL
                     LPDHSLVESLCFAHDLGHPPFGHGGEMALNYKMYAFGGFEGNAQSFRIMTQLEPYTET
                     AGMNLTRRTLLGVMKYPALLSQTSPIEPAEMSEARHINLHHFPQSKGIFDDNNHFFEW
                     VLAPLSEKDRRQFCTVQPNQDPKQPNKTQYKSLDCSIMELADDIAYGVHDLEDAIVGG
                     MVTPQSWQNAEKLLAECQSDWVKQRLPEIREKLFSQHRYERKDVIGALVNHFITNVRW
                     KALPEFDEPLLRYNAYLPESVACVLKILKDFVYQYVICDAKTQRVERKGQRILMELFD
                     ILSSDPMRLLPNNVRERWKNAEESKRARVICDYLAGMSDGQAFKLFESL"
     gene            9443..9742
                     /locus_tag="PXC99_001036"
     CDS             9443..9742
                     /locus_tag="PXC99_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417501.1"
                     /translation="MRFLPSEIYQPRGELVKADRQGNGEFEVEYRVSGNDVRGLAKSA
                     IAHAKRKGFHLVESDIHRDDADLKFKRGDQELDIEIEVKGRNRIEYKADLDLDKN"
     gene            9903..12815
                     /gene="rapA"
                     /locus_tag="PXC99_001037"
     CDS             9903..12815
                     /gene="rapA"
                     /locus_tag="PXC99_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-associated protein RapA"
                     /protein_id="HDL5417502.1"
                     /translation="MFLVGQRWLSESENNLGLGIVTSVDHRTVTINFPAAEEERVYAI
                     AVAPLTRVQFQAGDRINSIDGWQLEVSEVVENQGAVIYLGKRVDNGEEAVLPEMLLDH
                     KISFSKPQDRLFSAQIDRSDRFALRFNALQHQQAQYQSPLRGLRGIRASLIPHQLHIA
                     KEVGQRLAPRVLLADEVGLGKTIEAGMILQQQLFSGRAERVLVLVPESLQHQWLVEML
                     RRFNLKFSLFDEERCSDFDKQDENGDDVSENPFESEALVITSLNWLETSPQRANQVLA
                     ADWDLLIVDEAHHLEWSETESSIGYQLVERLSQQIPAVLLLTATPEQLGQESHFARLA
                     LLDSDRFYDYAEFVQEQAQYKPVADAVSSLLSDKPLSNDEQNAIAELLSEQDTEPMFR
                     AINSKKSDENDRLQARQELISELIDRHGTSRVLFRNTRQGVKGFPHREYHQISLEMPK
                     QYQNALKVMGMMGSVSQSDLLYPEYLFQRMNPNAKWAEFDPRIDWLITFLKNHRDEKV
                     LVICKQADTAIALEQVLREREAIRSAVFHEKMSIVERDKAAAYFAQQEEGAQVLISSS
                     IGSEGRNFQFAKDLVLFNLPDNPDLLEQSIGRLDRIGQKNDIQIYVPCFNLSAQQMLA
                     EWYHKGLNAFEETCPMGTAIFRELGEELQQFLQKPELSAQFDDFVAKTYKRQQYLKAE
                     LEKGQDRLLELNSNGGEAAQQLANDIAKEDNNPQLVNFALSLFDVIGVEQEDLGEQSI
                     VISPTGHMLVPDFPGLSEDGTTITFNRELALMREEVEFLTWDHPMIRNGIDLITSGDI
                     GKSAISLLVNNKLPAGTLLLEALYVVEAQAPKGLNLTRFLPPTPIRVLVDNKGNNIAP
                     QVSFAGLERQLKPVNKQMANKIAKMARADIEKLIKASEKAVEPQVQQVIETAKFEANS
                     KLKAELHRLESLKMVNKNIRADEVEALEQQLNASLAQLETANYRLDSLRVIVSNKA"
     gene            12942..13238
                     /locus_tag="PXC99_001038"
     CDS             12942..13238
                     /locus_tag="PXC99_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL5417503.1"
                     /translation="MYIDLQYAVPLLFEYDPNKSQINLAKYGIDFEQAKLLWEDERKV
                     VLEACIEPELRYFLIGKIYDKYWTAFFTPRNDVIRLISVRRSRKKEISYYEKYH"
     gene            13222..13464
                     /locus_tag="PXC99_001039"
     CDS             13222..13464
                     /locus_tag="PXC99_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HDL5417504.1"
                     /translation="MRNTISAEELERIFDEGKEDILQYCDLSTAHRPGQMKRVNVDFP
                     NWMVEALDKQARHLGVPRQALIKMWIAEKLPVQSPR"
     gene            13476..14144
                     /gene="rluA"
                     /locus_tag="PXC99_001040"
     CDS             13476..14144
                     /gene="rluA"
                     /locus_tag="PXC99_001040"
                     /EC_number="5.4.99.28"
                     /EC_number="5.4.99.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA pseudouridine(32) synthase/23S
                     rRNA pseudouridine(746) synthase RluA"
                     /protein_id="HDL5417505.1"
                     /translation="MALIEYNPPLEPFLDEVYRDNHILVINKPSGLLSVPGNRPEYYD
                     SAMTRVQQKYGFTEPAHRLDMATSGILLFALSKAAEKELKRQFREREPKKHYIALLWG
                     KLGEKVGDKGEMNFPLICDWENRPRQKICYERGKKAITHYEVLAHYPNNIARVKLTPI
                     TGRSHQLRVHSLALGHPIIGDKFYANPLAKSLSPRLCLHAESLTITHPITRELMTFTA
                     EPTF"
     gene            complement(14122..14697)
                     /gene="ampD"
                     /locus_tag="PXC99_001041"
     CDS             complement(14122..14697)
                     /gene="ampD"
                     /locus_tag="PXC99_001041"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase
                     AmpD"
                     /protein_id="HDL5417506.1"
                     /translation="MPNLKIEQGCLTGQKQVPSPHFSQRPDQEDISLLVIHYISLPPE
                     EFGGNFIDLFFQGKLEPTAHPYFEEIKDLRVSAHCLINREGEITQYVNFNDIAWHAGV
                     SCFEGREKCNEYSIGIELEGSNNQPFTQAQYQSLANLTKAIQQSYPQITDERITGHCH
                     IAPERKIDPGQYFDWAYYKHLLNEAKKSAQQ"
     gene            14757..15599
                     /locus_tag="PXC99_001042"
     CDS             14757..15599
                     /locus_tag="PXC99_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001300574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HDL5417507.1"
                     /translation="MLSYRHSFHAGNHADVLKHIVQLLILRALKEKEKGFLYLDTHSG
                     VGRYSLLSFESEKTGEYLEGVARLWERDDLPEEVAFYIDELKKLNRGGKLKYYAGSPL
                     LAVQQLREQDRAILTELHPNDFPLLRQEFAKAKNVQTKRENGFQQLKSALPPKERRGF
                     VLIDPPYELKEDYELVVKAIEEGYKRFATGVYAIWYPVVLRQHTKRIVRGLMDTGIRK
                     ILQIELAVRPDSDQRGMTASGMIVINPPWQLETQMKKILPYLTEVLVPEGTGSWKVEW
                     ITPE"
     gene            15722..16363
                     /gene="pyrE"
                     /locus_tag="PXC99_001043"
     CDS             15722..16363
                     /gene="pyrE"
                     /locus_tag="PXC99_001043"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HDL5417508.1"
                     /translation="MQQYKHDFIEFALSRNVLKFGEFTLKSGRISPYFFNAGLFNTGR
                     DLAKLGEYYAKAIQASGIEYDVLFGPAYKGIPIATTVAVALANLFDVDKPCCFNRKEA
                     KDHGEGGNLIGSPLTGKILLVDDVITAGTAIRESMEIINANNAQLAGVLIALNRKEKG
                     KGELSAIQEVERDYGCQVFSIVDFDDLVAFIETSPQYAPYLPKMREYREKYGV"
     gene            16537..17626
                     /locus_tag="PXC99_001044"
                     /pseudo
     CDS             16537..17626
                     /locus_tag="PXC99_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607068.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
     gene            complement(17691..18881)
                     /gene="metC"
                     /locus_tag="PXC99_001045"
     CDS             complement(17691..18881)
                     /gene="metC"
                     /locus_tag="PXC99_001045"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HDL5417509.1"
                     /translation="MSNYKNLSTKLVHTGRKKRNTQGAVNPVIQRASSLVFETLEEKK
                     HATQNRYKGALFYGRRGTLTHFSLQEAMCELEGGAGCYLYPCGAAAVTNAILAFVEQG
                     NHVLMTGAAYEPTQEFCNALLKRMGVSTTYYDPMIGEGLKALVQPNTKVLFLESPSSL
                     TMEVPDIPTLVRVAREINPEIVIMIDNTWSAGVLFPALEYGIDISIQAGTKYLVGHSD
                     VMIGTAVSNARCWDKLREGSYLMGQMVDADSAYITARGLRTLGIRLKQHEQSSIAVAN
                     WLAQRPEVKAVYHPALESCPGHEFFKRDFLGSSGLFSFELCEKLSNDKLANFLEHFEL
                     FSMAYSWGGFESLILANQPEEIAKIRPAIERKLTGTLIRIHVGLEAVEDLIADLEQGF
                     NRIR"
     gene            complement(18940..19479)
                     /gene="dsbB"
                     /locus_tag="PXC99_001046"
     CDS             complement(18940..19479)
                     /gene="dsbB"
                     /locus_tag="PXC99_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbB"
                     /protein_id="HDL5417510.1"
                     /translation="MLYFFKNLSQSRSAWFLLMLSCLILEGTALYFQHGMGLVPCVMC
                     IYERVALFGILFAGILGFLGNRYAIIRYLAILIWLGSAFKGLVLSIKHHDYQVNPSPW
                     NQCEFKVNFPQTLPLDQWLPQVFAPGPVNCSQSQWEMFGFSMAQWLIFTFAVYLIVAV
                     IVLISQFKRSRQRNNFMFR"
     gene            complement(19542..21083)
                     /gene="nhaB"
                     /locus_tag="PXC99_001047"
     CDS             complement(19542..21083)
                     /gene="nhaB"
                     /locus_tag="PXC99_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proton antiporter NhaB"
                     /protein_id="HDL5417511.1"
                     /translation="MSSIDALFKSFLGKSPEWYKLCILAFLIINPLIYFFINPFVAGW
                     FLVAEFIFTLSMALKCYPLQPGGLLAIEAVVIGMTNPHHIKEEIMANFDVILLLMFMV
                     AGIYFMKQLLLYIFTKLLVAIHSKKILSLSFCLSAAFLSAFLDALTVIAVIISVGTGF
                     YGVYHKVASGNNFEDSTDITNDEKIISNKEILEQFRGFLRSLLMHAGIGSALGGVMTM
                     VGEPQNLIIASQAEWGFIEFLLRALPVSLPVLICGIATCFLVEKYKLFGYGDRLPSKV
                     WVVLARYSQLKEQKMTKQDRLKMLVQAIAGIWLIIGLALHLADVGIIGLTIIIICTAF
                     CGITDEHTLGKAFQESMPFTALLIVFFSVVAVIIDLKLFEPIIAFVLSAEPHSQLSLF
                     YIFNGLLSMISDNVFVGTVYINEAKTALDAGIIDREQFDLIAVAINTGTNLPSVATPN
                     GQAAFLFLLTSSFAPLIKLSYGRMVYMALPYTIVLSIVGFLGLEFLLPSMTEVMINWG
                     WFITR"
BASE COUNT         6168 a         4178 c         4799 g         5959 t
ORIGIN      
        1 gtgaaatttt taaaaatcat aataaaaggg gagttgaaat ttttagtgag aaattgaata
       61 atagcccttt cgttttaatt cgtaaaccga taatttttag taaggaaata gatttaatga
      121 aacaaattcc tatgacggtg cgtggtgcag agcaactgcg tgaagaattg gattttttaa
      181 aaaatgtgcg tcgcccacaa attattgatg cgattgcaga agcccgtgaa cacggtgatt
      241 taaaagagaa cgcggagtat cacgcagccc gtgaacaaca aggtttctgt gaggggcgta
      301 ttcaagaaat tgaaggcaaa ttaggcaatg ctcaaattat tgacgtcact aaaatggcaa
      361 acaacggcaa agtgattttt ggggcaacgg tgcagttagt gaatgctgat acagatgaag
      421 aagtcactta ccgcattgtg ggtgatgatg aagccaatat taaagagggc ttaatttcag
      481 ttaattcccc gattgctcgt ggtttaatcg gcaaagaggt ggacgattca gtcagcatta
      541 ccacaccggg tggcaaagtt gagtttgaca ttgttggcgt agaatatatt taatctacgc
      601 tagggcgaat tacaatagtg gggcgaaaaa attttcgccc ctactttatt aaacaatctc
      661 actcggtaca aagaagtagg caatttcacg ttttgccgac tcttcggaat ctgaaccgtg
      721 taccgaattt tcacgcatac ttaaggcata taaatcgcga atggtgcctt tttcacggtt
      781 atccggattg gttgccccca ttaatgcacg ataatggcta attgcatttt ccccttccag
      841 tacagaaacg acaatagatc ctgatgtcat aaattccact aacggctcaa agaaatcttt
      901 gcctttgtgt tccgcataaa atccttccgc ttgctcacgg gtaagatgta ctttttttag
      961 agctttgata gtcagcccgt tttcttccaa ttgagccaaa attttgccga ttaaattacg
     1021 gcgtgtagca tccggcttaa taatagaaag cgtttgttga atcatcatct tctcctattt
     1081 aacttgcatt cccggctgaa caccgctgtc tgcatctaat aagaacaggt tcgcaccgcc
     1141 tgtgccggca gataaaatca ttccctccga cataccgaac gacattttgc gtggagcaag
     1201 gttggcaatt acaatcacaa aacgcccgat aagtgcttcc ggatttgggt aggccgcctt
     1261 aatgcctgag aatacttggc gttggtggtc gcctaaatcc agctcaaaac gtaacatttt
     1321 gtctgatttt ggcacagcct cgcagttcaa tactttggct gcacgtaaat ctaatttcgc
     1381 gaaatcatca atcgtaattt cagggctgat tggctcaact gcaatatttt cttgtttttc
     1441 gaccgcttgt tgttccactt tttgtgttcc tttggtttgg ttttcggttt tcttattcgc
     1501 ttcggcaaat aaggctttgg tttcatcaat cactgcatca atctgttttt tctcaaggcg
     1561 tgagaatagc gatttaaacg gtgccacggt atgcccgaat aatggggtag cgatattatc
     1621 ccaacgcaat tcgctttgta agaatgcttc ggcacgttct gccagttttg gtaacaccgg
     1681 ttttaggtag ctcatcagca cacggaataa ctcaatgccc attgaacaaa ccgcttgtaa
     1741 ttcagcctct ttgccttctt ctttggcgat gacccaaggg gctttgtcgt caatgtattt
     1801 attggcttta tcggttaatt ccataatggc acgaatagct ttattaaatt cacggttttc
     1861 atagaaattc gctatggttt ctgcttgagc ggtaaattca ttaaataacg cttcgtcatc
     1921 taatttttca gctaatttgc cctcaaagcg tttagcgata aaactggcgt tgcgagaagc
     1981 aagattcact aatttgttta cgatatcgct gtttacacgt tgcacgaagt cgtctaaatt
     2041 aaaatctaaa tcttcaatgc gatcgtttaa ttttgccgca tagtaatagc gtaagcattc
     2101 cggatcgaga tgttttaaat aggtgttggc ttgaatgaat gtaccacgag atttcgacat
     2161 tttcgccccg tccactgtca cataaccgtg agcaaacaca ttggtcggtt tgcggtagcc
     2221 gctgccttcc aacattgccg gccaaaacag gctgtggaag taaacaatgt ctttaccgat
     2281 gaagtgataa agctcggtgg tggaatcttt ttgccaaaac tcatcaaaat caatgcctgc
     2341 acggtcgcat aaatttttaa acgatgctat ataaccaata ggggcatcta accaaacgta
     2401 gaagaatttg ttttctgcgt ccggaatttc aaaaccgaaa taaggggcat cacggctgat
     2461 gtcccattgc tgtaaaccac tttcaaacca ttcttgcatt ttattggcaa tttcaggttg
     2521 gagtgagccg gaacgagtcc actctttcaa cattccctca aagcttggca ggtcaaaaaa
     2581 gaaatgttct gattctttta ccaccggagt tgcaccggaa actgccgagc gagggttgat
     2641 taaatccatc gggctatagg tagaggcaca tacttcacag ttatcgccat attgatcttc
     2701 ggctttacat ttcgggcagg tccctttcac aaagcgatcc ggcaagaaca tatttttttc
     2761 tgggtcgaac agttgtgaaa tcactttgct tttaataaaa ccgttcgctt ttaaggtttt
     2821 ataaatatcg gtagtgattt ggcggttctc ttcgctgtgg gtggaatggt aattatcaaa
     2881 gctgatatta aaactggcaa aatccgcttc gtgatcggct ttggcttttt cgattaactg
     2941 ctcaggggta atgcctaatt tatcggcatt aagcataata ggcgtgccgt gggcatcatc
     3001 agcacagaca aagtggactt cattgccacg catacgttga aaacgcaccc aaatatctgc
     3061 ttgaatatgt tcaagcatat gacctaaatg aattgcaccg ttagcatagg gcaaggcaca
     3121 agtaacaagc atttttcgtt tttggttagc cattcttttt ctcattaaaa ttagggtaaa
     3181 aattgccgtc tattttagcc caaaagtggc aggtttacca gttggcgtga atttattaga
     3241 gctttgggct aacaagcggt agaatatgat gcgctagagg cgaaacattt ttcgcctcaa
     3301 tttcccaaat gatgatgtgg gcgaaagatg tttcgcctct aaacctattt tggataaaaa
     3361 tagtatgcga caagtaaagt tataccgcta ccaactcccc attcaaaccg gtgtagtgtt
     3421 acgcaagcaa cctttgaaag aaaggcaagg ggtgttggtg tgtttgcaag aacaggagaa
     3481 agtcggctgg ggcgaaattg caccgcttcc aagttttagc caagagagcc tagaacaagc
     3541 tgaaaaccaa gctgtgaatt ggttaaaggc gtggcagaaa ggagagcctg aaacgttaga
     3601 gcagcttttc ccgtctgttg cctttgggct aagctgtgcg ttggctgaac tgaataatga
     3661 attaggcgag caagcgaata accaatcggc ggtgctgtgc tatggcgatt tggaaaagtt
     3721 acacacggca tttagccaac atacgaaccc aatcggtaaa attaaaatcg gtctcaatcc
     3781 tgaacaggaa ggcgagcagg caaatttgct gttgcatact tttccgaatt tacgcctaag
     3841 gcttgatgcc aaccgtcttt ggagcttgga acaagcggtc aaatttgctg aaaaaattgc
     3901 aaatgaacat aaaccccgta ttcaatttat cgaagaacct tgccaagcgc tcgaactttc
     3961 ccgccaattt gccacacaaa ccgacattgc gattgcgtgg gacgaaaccg tgagagaggc
     4021 gaattttttg gtaaaaaaag agccaaattt gaccgctatt atcattaaac ctacgctggt
     4081 tggttcgctt gaaaaatgcg tgaatttaat tcaacaagca cagaagcaag gattagtagc
     4141 ggtgattagt tcaagtcttg agagcagttt gggcttaacc caactggctc gtatcgccca
     4201 acaatacacc ccaaacagtg tgccggggtt ggatacgtta aatttaatgc aacaccaatt
     4261 attgcgagat tggcacgact ctagcttgcc gttggtcggg ctagaaagcg aatttgttag
     4321 ggaagttgtg gtataatctc ccaattaaac actctctccc cttgtgggag agagaccgct
     4381 tatgagcgtt cagcgaaata agcagagaga ggggaagcgg tcatttttct aaaaaagttt
     4441 gcacatttcc cctctccctg atttttcttc tggacgaaga cgtatttccc ccctctccct
     4501 gatttttctt ctagacgaag aaaaatctgt ccctctccca cgaggggaga gggtaaagta
     4561 atttatggta taaaaatagt atgcgtttag acaaatttat cgccgaaaat accggtttga
     4621 cccgttcaca agcggctaaa gtgctgaaaa gtggtgtggt gacggtaaac ggcaatattg
     4681 aaaaaagtgg tgcggcaaaa atcagtcaag aagatgaaat ttattacgaa gatcagaaat
     4741 tagagtgggt ggaagagggg cagtatttta tgctctataa gccacagggc tatatttgtt
     4801 cacacgatga tggtgagtac ccaacggtgt ttcaattctt tgattatccg ttaatgacta
     4861 aattgcatac cgcagggcgg ttagatgtgg ataccacagg gctggtgctg ttaaccgatg
     4921 acggcaaatg gtcgcaccgt attacctcgc ccaagcacca ttgtgaaaag acatacttag
     4981 tgacgcttgc tgatccggtg gaagattttt atgcacagcg attggcagaa ggaattttat
     5041 tgcgtggcga gaaagagcca accttgccgg ctcaacttga aattttagac gattacaatg
     5101 tgaatttaac tattagtgag gggcgttatc atcaagttaa gcgaatgttt gccgcccttg
     5161 ggaataaagt cgaggcattg caccgctggc gaattggcga tgtggtgtta gatgaaaggt
     5221 tggaagaagg tgaattccgc tcgctcactt cagaggagat agccagtttt aatggaaagt
     5281 agaagaccaa gcctgagctt tttcatcata ttaggtatga tggcaatgtt gccaccatta
     5341 gccattgata tgtatttgcc ctcattttta gacattgccc gtgacttggc ggtttcgcaa
     5401 gaaaaagtgc aaaccacctt ggcggtattt accctaggtt ttggggcagg gcaactattc
     5461 tggggaccga tggcagacag ctttgggcgg aaaatcatta ttttaatcgg attagtcggc
     5521 tcggcgattg ccgcttattt tctgacccaa gttcagaata ttgaaacatt ttacctgcta
     5581 aggttagtac agggcttatg tgcggcagcc ccggcggtgg tgctgggagc attagtgaga
     5641 gatctgtttg agcgtaattt atttgccaaa ttgatgtcgg ttattatgat tatttctatg
     5701 cttgccccat tgcttgcacc gattgttggc ggttatattg ccaaatattt ccactggcac
     5761 tcaattttct atgtgttagt ggcgatgggg attttgtgcg tggtattaat tagttggaaa
     5821 atccctgaaa cattagcccc cgaaaaacgc ctgccgttaa gttttggcaa aactttaagc
     5881 aattttgcca tcttactgaa acataggcct actcttggtt atgtgctgat tggcggctta
     5941 acctttgcag gtattttctg ttttttaacc tcaggctcga ttgtctatat tgggctttat
     6001 ggcgtgtcgc aagaaaattt cggctatttc ttcgggctga atatgattgt gatggtgacg
     6061 atgacggcga ttaacagcaa aatggtagtg aaagtcggct ctgaaacgat gttacgaatt
     6121 gctttagcta tgcaactgtt agccggcatt tggctggctt tagtggcgat ttttgattta
     6181 ggcttctggg caatggcaat cggtattccg ctttatatcg gaatgctttc caccattggt
     6241 agtaatgcca gtgccgccat tttagagcaa tttccacaaa tggcaggcac ggctaacgga
     6301 gtagcaggta cggctcgttt tggtgttgct tcccttgttg gagcagggct ttcacatatt
     6361 gctgtaacca gtgctgcccc aatgcttttg gcgatggcat tgtgcgttat gttagccggt
     6421 gtggtgtatt attttctgtg ttataagcga taactaggtt ggggttagct tgcgaaaacc
     6481 caacaaattt ctacaagcgg ttaataatag tacatttttt gcaaattttt aggcagaatt
     6541 aaccgcttgt gtggtacgag cgtggacgct cgcaccatcg gggcaatatc tactaagatt
     6601 ttaaaaacag cgaaatagat tccaaatgcc cggtgtgggg gaacatatca atcattgccg
     6661 ctttttctag cctgtagcct agttgcaaca gtttttcggc atctcgcacc agtgttgccg
     6721 gattgcaaga gacataaaca atccgctcag gattgagtga tgtcaagtga tctaggcaaa
     6781 atagtgctcc gttgcgtgcc gggtcgagta gtaccttgtt aaacggctct tttgcccaag
     6841 gtttgtcaga aaacggctca tctaaattgg tttggtaaaa ttccacattt tttagaccgc
     6901 ttgtcaccgc attctctcgg gcttgttgca ccattggttc taccccttcc acaccgacca
     6961 ccgatttcgc tcgctcagca ataggcaagg taaaattccc cattccacag aagagatcta
     7021 acactcgatc ttggttggat aattccagcc actcaagggc tttttccacc attttttcat
     7081 tgagcgtggc attcacctga ataaaatccc gaattgaaaa atgcaacttt agaccctgaa
     7141 tttgataata cgggcgttca ccgcacagat gctcaatgtg attttcgcta gtcatcacaa
     7201 aaagagataa ttgctcttgt gtggcgaatt gacgcaaatt gtggttatct tgcgccgata
     7261 atgcccctaa atggcggaaa aatagggcaa tggtattgtc cgcactgacc agctcaatat
     7321 gccccaattt tttcggctgt tgccagtttt caatcaggtg ttttaatttt gggagcaaat
     7381 tggcaagcgg ttcaaccagc acttcacagt gtgcaagcgg tataatttgg ttggaatttt
     7441 gcaaacgaaa gccgattacc gccttgcctt gctggatcgc aatgcttaat tttgcccgac
     7501 ggcggtagtg tttatcgttg ccgataatca tcggctgaac atcaatagcg tgggtttgca
     7561 atttctgtaa gcgttggaat aaagcctgtt gttttgcctt acgttgcagt tcaagcgaaa
     7621 tatgctgcat ttggcagcca ccgcattgcc cgtaaagttc gcagcttggc attcgccgat
     7681 ttgcagattt tttaagaatt ttaaccgctt gtccacgtcc gtattggcgt ttctcttcca
     7741 acactttaaa ttccacctgc tcatcaggca gggcattttc gataaaccaa gttttgccgt
     7801 tgattttggc aatccctaag ccttgataat ctaacgattg aatagttgcc ttttgacaag
     7861 cgggtgattt tatcggtttt tttgccgatt tttcagaata aaaaatagcc attgttttca
     7921 gatgaattgt tatgatataa agtgtcgaaa tggggagatt atataagaaa agcagttggc
     7981 ggaaaatgga ggcaatatga tttcatcggt ttggaatgaa cgttatttgg cggataaaaa
     8041 acgggaacaa gatcaccgct cgccttttca gcgggatcgg gcaaggttat tgcattcgga
     8101 ggcttttcgc tgtttgcagg cgaaaacgca aattcacgcc gtgggggaag atgattttta
     8161 tcgaacccgt ttaacccatt cgttggaagt ggctcaaatc ggtagcagtt tgcgagaaaa
     8221 attattagcg gatgtggaag gctttcaagc ggtctgttcg gagcaggaat ttgcaaaaaa
     8281 tatggcaaat ctgaccgctt tattgccgga tcatagcttg gtggaatccc tttgttttgc
     8341 ccacgatctc gggcaccctc cgttcgggca cggtggtgaa atggcgttaa attataaaat
     8401 gtacgccttt ggcggcttcg agggtaatgc tcaatccttt cggattatga cccagcttga
     8461 gccttacacc gaaacagccg gaatgaatct gacccgtcgc accttactgg gggtaatgaa
     8521 atatccggca ctcttgtctc aaacctcgcc gattgagccg gcagaaatga gcgaggctcg
     8581 gcatattaat ttgcaccatt ttccacagag caaagggatt tttgatgaca acaaccactt
     8641 ttttgagtgg gtattagccc cgttaagtga aaaagaccga cgccaatttt gcacggttca
     8701 gcccaatcaa gatccgaaac agccaaacaa aacgcaatat aaatctctcg attgcagcat
     8761 aatggaacta gcggacgata ttgcctatgg cgtacacgat ttggaagatg cgattgtagg
     8821 tggaatggtc acaccgcaat cgtggcaaaa tgcggaaaaa ttgctggcgg agtgccaatc
     8881 cgattgggtg aaacaacgcc tgccggagat tcgggaaaag ctcttttctc agcaccgcta
     8941 cgagcgaaaa gatgtgatcg gggcattagt gaatcatttt attaccaatg tgcgttggaa
     9001 agctctgcct gaatttgacg agccgttgct acgttataat gcctatttac cggaaagtgt
     9061 tgcctgtgtg ctgaaaatct tgaaagattt tgtgtatcaa tatgtgattt gtgatgccaa
     9121 aacccagcgg gtggaacgca aggggcaacg cattctaatg gaattgttcg atattttaag
     9181 cagtgatccg atgcgattac tccctaataa tgtgcgggaa cgttggaaaa atgcggaaga
     9241 atctaagcgt gcaagggtaa tttgcgacta tttagccggt atgtctgatg ggcaggcgtt
     9301 taaacttttt gaaagtttat aatgaacttt gttaattttg caaggtctca gtaataggtt
     9361 tcatttattt aataggagat ttcaatgaaa actgtttcta aaggtctttt agtattagca
     9421 actttggctt ctgcaacagc atttgcggtt tcttccaagt gaaatttatc agcctcgtgg
     9481 cgaattagtt aaagcagatc gtcaaggtaa tggtgagttt gaagtagaat atcgtgtcag
     9541 tggtaatgat gttcgtggct tagcgaaaag tgcgatcgcc cacgctaaac gtaaaggttt
     9601 ccatttagta gaatctgata ttcatagaga tgatgctgat ttaaaattca aacgtggtga
     9661 ccaagagctg gatattgaaa ttgaagtaaa aggtagaaat cggattgaat ataaggcaga
     9721 tctagattta gataaaaact aaatttaccc cttaaaacga ccgcttgtgt gatttaaccg
     9781 cacaagcggt ctttttattg tgcttttttg caaaaatact caagccgacc ggtcccggaa
     9841 tttggtaaaa tagccgttta aatgacaata atgatgcttt tacttattac ttagaggaaa
     9901 aaatgttttt agtcggtcag cgttggctaa gtgaatcgga aaataattta ggtttgggaa
     9961 tcgtgacttc ggtggatcat cgcactgtca ctatcaattt cccggcagcg gaagaagagc
    10021 gggtctatgc aattgcagtt gcacctttaa ctcgagtgca gtttcaagcc ggagatagaa
    10081 ttaacagtat agatggctgg cagttagagg tttcagaggt tgtggaaaat caaggtgccg
    10141 taatctattt gggcaaaagg gtggataacg gtgaagaagc ggtactgcct gaaatgttgc
    10201 tcgatcataa aatcagtttc agcaaaccgc aagaccgcct tttttcggct cagattgatc
    10261 gctcagatcg ctttgcatta cgctttaacg ctttgcagca ccagcaagcg caatatcagt
    10321 cgccactgcg tggtttgcga ggcattcgag ccagcctgat tccacatcaa ttacatattg
    10381 caaaagaagt cgggcaacgc cttgctcctc gtgtgctatt agccgatgaa gtgggactgg
    10441 gtaaaactat tgaagctggt atgattttgc aacaacagct attttcgggc agagcagaac
    10501 gagtattggt attagtgccg gaaagtttgc aacaccaatg gttggtggaa atgcttcgcc
    10561 gttttaatct gaaattctcg ttattcgatg aagaacgttg tagtgatttt gataaacaag
    10621 atgaaaatgg cgatgatgta agtgaaaatc catttgagag cgaagcgtta gtcattactt
    10681 cactaaactg gctggaaacc tcaccgcaac gagccaatca agtgcttgct gccgactggg
    10741 atctattaat tgttgatgaa gctcaccatt tagaatggtc ggaaaccgaa tcttctatcg
    10801 gctatcagtt ggtagagcgt ttatctcaac aaattcctgc cgtcttgctt ttaacggcaa
    10861 caccggagca attagggcaa gagagccatt ttgcccgctt ggcgttgtta gattcggatc
    10921 gtttttatga ttatgccgag tttgtacagg agcaagcaca gtataaaccg gtggcagatg
    10981 cggtgagtag cttattaagc gataaaccgc taagtaatga cgagcagaat gcgattgcgg
    11041 agctgttaag cgagcaagat accgagccga tgttccgtgc aattaatagc aaaaaatcgg
    11101 acgaaaatga ccgcttgcaa gcccgtcaag agctgattag tgagctaatt gaccgccatg
    11161 gaaccagccg ggtgttgttt agaaataccc gtcagggagt gaaaggcttc ccacatcggg
    11221 aataccacca aatcagccta gaaatgccga aacaatacca aaatgcgtta aaagtgatgg
    11281 gaatgatggg gagtgtgagc caaagtgatt tgctctatcc tgaatatttg ttccaacgaa
    11341 tgaacccgaa tgcgaaatgg gctgaattcg accctcggat tgattggctc atcactttct
    11401 taaaaaatca tcgtgatgaa aaagtgctgg tgatctgcaa acaggcggac actgcgattg
    11461 ctttggagca agttttgcgt gagcgtgagg cgattcgttc tgccgttttc cacgagaaaa
    11521 tgtcgattgt tgaacgtgac aaagctgccg cctattttgc tcaacaagaa gaaggcgctc
    11581 aggtgctgat tagttcaagc atcggttcag aagggcgaaa tttccaattt gctaaagatt
    11641 tagtgctgtt taatttgccg gataacccgg atttattgga gcaaagtatt gggcgattag
    11701 atcgtatcgg acagaaaaat gacattcaga tttatgtgcc ttgctttaat ttatcggctc
    11761 aacagatgtt ggcagagtgg tatcacaagg gcttgaatgc gtttgaagaa acctgcccga
    11821 tgggaacagc gatcttccgt gaattaggtg aagaattgca acaattcctg caaaaacctg
    11881 aactttcagc ccaatttgat gattttgttg cgaaaaccta taaacgccaa cagtatttga
    11941 aagccgaact ggagaaagga caggacagat tattagaact gaattctaat ggcggagaag
    12001 cagctcaaca gctcgctaat gatattgcga aagaagataa taatccgcag ttggttaatt
    12061 ttgccttgag tttgtttgat gtgattggcg ttgaacagga agatttaggc gagcagagca
    12121 ttgtgattag cccaaccgga catatgcttg tgcctgattt cccggggcta tcggaagatg
    12181 gcacgaccat tacctttaat cgtgaactgg cgttaatgcg ggaagaggtg gaatttctca
    12241 cttgggatca cccgatgatc cgcaatggta ttgatttaat cacctccggc gatattggca
    12301 aatcagcaat ctcattgctg gtgaataata aattgcctgc cggtacatta ttacttgagg
    12361 cgctttatgt ggtggaagca caagcaccga aagggctaaa tttaacccgt ttcctaccgc
    12421 caaccccgat tcgggtttta gtggataaca aaggcaacaa tattgctccg caggtctctt
    12481 ttgccgggct tgaacgccaa ttaaaaccgg tgaataaaca gatggcaaat aaaattgcca
    12541 aaatggctcg agcggatatt gaaaaattaa ttaaagcgag tgaaaaagcg gtagaacctc
    12601 aggtccaaca ggtgattgaa actgccaaat ttgaggcaaa tagcaaatta aaagcagaat
    12661 tacaccgctt ggaatcactc aaaatggtga ataaaaatat tcgagccgat gaagttgaag
    12721 ccttagaaca acagcttaac gcttcccttg cccaacttga aacggcaaat tatcgcttag
    12781 atagcttgcg agtgattgta agtaataaag cgtaattttt tgcaagtacg aaaagtgatt
    12841 ttttcgatct gtgtcgaaaa aatcactttt ctattttgtg tcatccttgc agattattta
    12901 tgctattcct catattgtaa aaggtataaa aaaggaatat tatgtatata gatttgcaat
    12961 atgctgtgcc gttattgttt gaatacgacc cgaacaaaag ccaaattaat ttagccaaat
    13021 atggtattga ttttgaacag gcaaagttgc tttgggaaga tgaacgaaaa gttgtactgg
    13081 aggcttgcat tgaacccgaa ttacgctatt tcctgattgg caagatttat gataaatatt
    13141 ggacagcgtt ttttacacca agaaatgatg ttattcgttt aatttcagtt agacgttccc
    13201 gtaaaaaaga gatctcatac tatgagaaat accattagtg ccgaagaatt agaacgtatc
    13261 ttcgatgaag gcaaagaaga tattttacaa tactgcgatc tttctaccgc tcatcgcccg
    13321 gggcaaatga aaagggtgaa tgttgatttc ccaaattgga tggtagaagc gttagataag
    13381 caagccagac atttaggtgt gcctcgccaa gccttgatta aaatgtggat tgcggaaaaa
    13441 ttaccggttc aatcacctag gtaagcgagt ggcaaatggc attaattgaa tataaccctc
    13501 cattagaacc atttttagat gaggtttatc gggataacca tattttagta attaataagc
    13561 ctagtggttt attatcggtg ccgggcaatc gtcccgaata ttacgacagt gcaatgactc
    13621 gagtacagca aaaatatggc tttaccgaac cggctcatcg tttggatatg gcaacaagcg
    13681 gtattctttt gttcgcccta agcaaagcgg cggaaaaaga actaaaacgc caatttcggg
    13741 aacgtgaacc gaaaaaacac tatattgcgt tactttgggg caaattaggt gaaaaagttg
    13801 gggataaggg cgaaatgaat tttccgctga tttgcgattg ggaaaatcgc ccccgccaga
    13861 aaatttgcta tgaacgaggc aaaaaagcca ttacccatta tgaagtgtta gctcattatc
    13921 cgaataatat agcgagagta aaactcacgc ctatcacggg gcgttcgcat cagctacgag
    13981 tacatagcct tgcgttaggt cacccgatta ttggcgataa gttttatgct aatccgctgg
    14041 caaaaagttt atcgccccgt ttatgtttgc acgcggagtc actaacaatt actcacccga
    14101 ttacaaggga gttgatgacg tttactgctg agccgacttt ttagcctcgt tcagtaggtg
    14161 tttgtaatat gcccaatcaa aatattgccc cgggtcgatt ttccgttccg gggcaatatg
    14221 gcaatgcccg gtgatgcgtt catcggtaat ttgtggatag ctttgctgaa tggctttggt
    14281 caaatttgcc aaagattggt attgagcttg agtaaacggc tgattattac tgccttccag
    14341 ttcaatgcca atcgaatatt cattgcattt ctcccgccct tcaaaacaag agacgccggc
    14401 gtgccacgct atatcgttaa aattcacata ttgcgtgatt tccccctccc tattaatcaa
    14461 acaatgggcg gaaacccgta gatctttgat ttcttcaaaa taagggtgag cggttggttc
    14521 gagtttacct tggaaaaaca gatcgataaa atttccacca aattcttccg gcggtaagct
    14581 gatgtagtga ataaccaaca aggaaatatc ctcttgatca ggacgttggc taaaatgcgg
    14641 agacggcact tgtttttgac cggttaaaca gccctgttcg atttttaaat ttggcatagt
    14701 ctaaataggg tgaatacgtt aaaatatggc tcattttact agaaaaagag aagaatatgt
    14761 taagttatcg ccacagtttc cacgcaggca accacgctga tgtgctaaaa cacattgtcc
    14821 agcttttgat cttgcgagca ttaaaagaaa aagaaaaagg ttttttatat cttgatactc
    14881 actccggtgt ggggcgttat agtctgttaa gttttgaatc ggaaaaaaca ggcgaatatt
    14941 tagagggcgt tgcccgttta tgggagcgtg atgatttacc ggaagaagtg gcattctata
    15001 ttgatgagct gaaaaaatta aaccgtggcg gcaagttaaa gtattacgca ggctccccat
    15061 tattggcggt acagcaactg cgtgagcaag accgagccat tcttaccgaa cttcacccca
    15121 atgattttcc gctgttacga caagaatttg ccaaagcgaa aaatgtgcaa accaagcgag
    15181 aaaatggctt tcaacaatta aaatccgccc tgccgcctaa agagcgtcga ggttttgtgt
    15241 tgattgatcc accttatgaa ttaaaagaag attatgaatt ggtggttaaa gcgatagaag
    15301 agggctacaa acggtttgcc actggtgtgt atgccatttg gtatccggtg gtgcttcgcc
    15361 aacataccaa acgtatagtg cgaggtttaa tggataccgg cattcgcaaa attctacaaa
    15421 ttgagcttgc cgttcgtcct gatagcgacc aacgtggaat gacggcaagt ggtatgattg
    15481 tgatcaaccc accgtggcag cttgaaaccc agatgaaaaa aatcctgcca tatttaaccg
    15541 aggtgcttgt gccggaagga acaggttctt ggaaggtgga gtggattacg cctgagtaaa
    15601 ttaaatacgg atagcacaag cgtggacgct tgcgccatca taaattctga tttgcaatat
    15661 tttttagaaa aataaccgct tgtcttatca agaagtgggg gaaatataaa aggaaaaaac
    15721 gatgcaacaa tacaaacacg actttattga atttgcctta agccgcaatg tgctgaaatt
    15781 tggcgaattt accttaaaat caggcagaat cagcccctat tttttcaatg ctgggctttt
    15841 taacaccggg cgcgatttag ccaaattagg cgaatattac gccaaagcca ttcaagccag
    15901 cggcattgag tatgatgtgt tattcgggcc ggcttataaa ggcattccga ttgcaaccac
    15961 ggttgccgtg gcactagcca acctgttcga tgtggataaa ccttgttgct ttaaccgcaa
    16021 agaggcaaaa gatcacggtg aaggcggtaa tttaatcggt tctcccttaa cgggcaagat
    16081 tttgctggtg gacgatgtga ttaccgcagg cacggcaatt cgtgagtcga tggaaattat
    16141 caatgccaat aatgcccagc ttgccggtgt gctgattgcg ttaaaccgta aagagaaagg
    16201 caagggcgag ttgtctgcga ttcaagaagt cgaacgtgat tacggttgcc aagttttctc
    16261 gattgtggat tttgatgatt tggtagcatt tattgaaacg tcgccacaat acgctcctta
    16321 tttgccgaaa atgcgtgaat atcgtgaaaa atacggtgtt taacttttgc aaaaaaacag
    16381 caaaaactca ccgcttgtca ctctctaatc tcaccattat gaatcacttt catcttttgg
    16441 tgagattttt tcaattaaaa agccgataaa ttgattgtga gctttagcta attggcttag
    16501 gataaactcc tgtaatacag gagttggaga actaaaatgg cacatcaaaa attacctttt
    16561 cacgcagaca ccgttggctc atatttgcgt tccgatgctt ggaaaaaagc tcacgcagac
    16621 tataaagcag gcaacatttc cctcgaacaa cgtgatgaaa ttgtagaagc ggaagtgaaa
    16681 aaattagtac aagcatcaat tagatgcggg cattcaagtt gttacagacg gcgaatatca
    16741 ccgctcttgg tggcatattg atttcttgga aaatctgaac ggcattgaag gctatgtgcc
    16801 ggaaaaagcc tatgcgttta aaggggttga ggttcgccct tataatacac gttgttgcgg
    16861 taaagtgtct tggaatccga atcacccttt tattgagcat ttcaaaaaat tcaatgcgat
    16921 tgtaggtggt cgtgcggtgg cgaaatttac cattccaagt ccaaaccaat taatgtaccc
    16981 gattcagtgg gatcacggca tttacccaaa ccgtgaggaa tttgccaaag atgtgcaaca
    17041 ggcttataaa gaggcgatta aagcgttcta tgatgccggc tgtcgttatt tgcaaattga
    17101 tgatgtctat tgggggtcgt tgtgtaataa cgttggtcaa ccgacatttg aagccgataa
    17161 agctcaagcg gtggcgaata ttcaagccat tcttgccgat aagccggaag atttaaccat
    17221 taccacccac gtttgccgag gcaactataa atcttcttat ttattgacag gggcttatga
    17281 tccgattgcc gacggcttat ttgctcaaac caactatgat gggtatttct tagaatatga
    17341 tgacgagcgt tcaggcggtt ttgagccgtt aaaacatttt gccaacaaca aagggcgtgt
    17401 ggtattgggc ttaattagtt caaaattccc tgaattggaa gataaggaag cggttaaagc
    17461 ccgtattcaa gaagcggcaa aatatgtgcc gttagagcag ctttgcctaa gcccgcaatg
    17521 tggttttgcc tcaaccgaag agggcaatat tatgtcggaa gcacagcaat gggcgaaagt
    17581 tcgtcttgtg gaggaaatcg cccaagaagt ttggggcgaa gattaattag agtgaaaaat
    17641 gcccgtaaca agcgggcatt ttttgtgaat tttttgcaaa ttcaagccat ttagcgaatg
    17701 cggttaaaac cttgttctaa atcggcaatc aaatcttcca ccgcttccaa gccaacgtga
    17761 atgcgaatta atgttcccgt cagtttgcgt tcaatcgccg ggcggatttt ggcaatttct
    17821 tccggctgat tggcaagaat cagcgattca aacccacccc aagaatacgc cattgaaaac
    17881 agttcaaaat gctctaggaa gttggctaat ttgtcattcg agagcttttc gcaaagttca
    17941 aatgaaaata gaccgcttga acctaaaaaa tcccgcttaa aaaattcgtg ccccgggcag
    18001 ctttccaacg ccgggtgata aactgctttc acttcagggc gttgagccag ccagttagct
    18061 accgcaatgc tactttgttc gtgctgtttt aagcgaatgc ctaaggtgcg tagcccccga
    18121 gcggtgatgt aagcggaatc agcatccacc atttgcccca ttaaataaga gccttcacgc
    18181 agtttatccc aacaacgggc gttagaaacc gcagtaccga tcatcacatc agaatgcccg
    18241 actaaatatt tagtgccggc ttgaatggaa atatcaatgc catattctaa agcagggaac
    18301 agcacaccgg cagaccaagt gttgtcgatc ataatcacga tttctgggtt gatttcacga
    18361 gcaacacgca cgagagtcgg aatatcaggc acttccattg ttagcgagct cggcgattct
    18421 aaaaaaagca ctttggtgtt cggttgcaca agggctttca agccttcacc aatcatcggg
    18481 tcataataag tagttgaaac acccatacgt tttaacagcg cattacagaa ttcttgtgtc
    18541 ggttcgtaag ctgcgcctgt cattaaaacg tggttgcctt gttccacaaa agctaaaatc
    18601 gcattggtga ctgccgccgc accgcaaggg taaaggtagc aacctgctcc accttctaat
    18661 tcacacatcg cttcttgtaa tgaaaaatga gtgagagtgc cacgtctgcc ataaaataat
    18721 gctcctttgt agcggttttg tgtagcgtgt tttttctctt ctaaggtttc aaacactaaa
    18781 gatgaagcac gctgaatcac cgggttaact gctccttgtg tgttacgttt tttacgccct
    18841 gtatgaacaa gtttggtgga aagattttta tagttagaca taacttttcc taaagtaaaa
    18901 tgcatagggg caaatcaaca tttgcccctt tattaataat taacgaaaca taaagttatt
    18961 tctttgacgg ctacgtttaa attggctgat tagcacaatg accgcaacaa ttaagtaaac
    19021 cgcaaaagta aagattagcc attgtgccat tgaaaagccg aacatttccc attggctttg
    19081 gctacaatta accggaccgg gggcaaacac ttgtggtagc cattggtcaa gcggcaaggt
    19141 ttgcgggaaa ttaactttaa attcgcattg attccatggt gatggattga cctgataatc
    19201 gtggtgtttg attgaaagta ctagcccttt aaatgcgcta ccaagccaaa ttagaattgc
    19261 caagtagcga ataatcgcat atctattacc aagaaatcct aaaataccgg caaataaaat
    19321 accaaataaa gcaactcgct cataaataca cattacacaa ggtactaatc ccatcccatg
    19381 ttggaaataa agcgctgtgc cttcaagtat aagacagctt aacattagta aaaaccatgc
    19441 actgcgagat tgtgatagat ttttaaaaaa atagagcata gttattcctc attttgtgaa
    19501 cttaaggcat tctaccttat ttggtatgag ttatctataa actaacgtgt aataaaccat
    19561 ccccaattta tcattacttc agtcatagaa ggtagtaaga attctaaccc taagaaaccg
    19621 acaatagata gaacaatggt ataaggtaat gccatataga ccattctgcc gtaagacagt
    19681 ttaattaacg gcgcaaagga ggacgttaat aagaataaga aagcagcttg tccgtttggg
    19741 gtagcaacag aaggaagatt tgtgccagta ttaattgcaa ctgcaatcag gtcgaactgc
    19801 tcacgatcta taatgccggc atctagtgcg gttttagctt cattaatgta aacagtaccg
    19861 acgaagacgt tatctgaaat catcgagagc aaaccattga aaatatagaa taatgaaagc
    19921 tgtgaatgtg gttcggcaga taacacaaag gcaatgatcg gctcaaataa ttttaaatca
    19981 ataatcacgg caacaaccga gaaaaacaca ataagcaatg cagtaaaagg catagattct
    20041 tggaatgctt tccctaaagt gtgttcatca gtaatgccac aaaatgcagt gcaaataatg
    20101 atgatggtta agccaataat ccctacatcg gcaagatgta gcgctaagcc aataattaac
    20161 caaattccag caatggcttg caccagcatc tttaagcgat cttgtttcgt cattttttgt
    20221 tcttttagtt ggctatagcg agcgagtacg acccaaactt tgctaggaag ccggtctcca
    20281 taaccaaata atttatattt ttctacaaga aagcaggtcg caatcccaca aattaacacg
    20341 ggtaagctaa ctggtaatgc tctaagtaag aattcgataa atccccattc cgcttgggag
    20401 gcaataatta agttttgtgg ttctcccacc atggtcatta cgccacctaa agctgagcca
    20461 ataccggcgt gcatcaataa acttcttaaa aaaccacgaa attgctctaa aatttcttta
    20521 ttagagatga ttttttcatc attggtaata tcagtagaat cttcaaagtt attacctgat
    20581 gcgactttat gatatacgcc gtagaaacct gttccaacgc taatgattac agcaataacc
    20641 gttaaagcat caagaaaggc ggataaaaaa gcagcgctta agcagaaaga aagggaaaga
    20701 atttttttcg aatgaatggc gacaagcagt ttggtgaaaa tataaagcaa taattgcttc
    20761 ataaagtaaa taccggcaac cataaacatt aaaagaagaa taacatcaaa gtttgccata
    20821 atttcttctt taatgtggtg aggatttgtc ataccgatta caactgcttc aatcgctaat
    20881 aaaccacctg gctgtaatgg ataacatttt aatgccatag agagagtaaa aataaattca
    20941 gcgactagaa accagcctgc aacaaaagga ttgataaaga aataaatgag aggattgata
    21001 attaaaaatg ccaaaatgca caatttatac cactcggggc tttttcctaa gaaacttttg
    21061 aacagagcat caatgctact catataaagg acctcaaaat ttgt
//
LOCUS       DANLVT010000033        21061 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.033, whole genome shotgun sequence.
ACCESSION   DANLVT010000033 DANLVT010000000
VERSION     DANLVT010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 21061)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21061)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21061
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.033"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(44..796)
                     /locus_tag="PXC99_001048"
     CDS             complement(44..796)
                     /locus_tag="PXC99_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-ribbon-containing protein"
                     /protein_id="HDL5417512.1"
                     /translation="MYQAIVHFSYHNFEQDPVTAISQILNQWLYNGQVIGREMPITFH
                     QNEFQARVCVPTQESLLPQYNSDEVNEALQQAVEIGVIFASFELVGRDYQGEESSHNR
                     SPAFQILYTTHLDTCSPLYDGEQFAPIPLYSLQDQSLSEAILEWQQNWQACDLLQMNG
                     NLLECHALVQISDETSDLAMIGRDLCQQIEQKTHIPTFYYLYRLGRDESEYQRKCPCC
                     GGEWKLTEPLHDIFHFRCEPCRLISNLSWELL"
     gene            complement(796..1701)
                     /locus_tag="PXC99_001049"
     CDS             complement(796..1701)
                     /locus_tag="PXC99_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HDL5417513.1"
                     /translation="MNEKYSKLVKNAANLAIIVAILLIVIKAFAWWKTGSISILAAMT
                     DSVVDLFASLTNILVLRFALQPADENHAFGHGKAESLAALAQSAFISGSAVFLLLQGF
                     HKLTNPELIAQSSIGVIVSIVSIVITALLVFYQRYVVTLTKSPAIEADSLHYQTDLLM
                     NAAILVAMLLNSAGFVYADAVFAIGIALYIAFNAVKMFWCAVQTLLDQALPDEEIERI
                     KEIASQHPNILGIHDILTRRAGAVRFIQLHLELDDHLTLLVAHEITDSLEQKLLAAFP
                     MSHVIIHQEPTTVVKQEFQDMAENI"
     gene            complement(1710..2273)
                     /locus_tag="PXC99_001050"
     CDS             complement(1710..2273)
                     /locus_tag="PXC99_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATPase"
                     /protein_id="HDL5417514.1"
                     /translation="MSAIKKGITLVALSLAGCVSQSPQFAVPDAIHFGQDTFVKVTHS
                     QIDEMQHLLYLPEKSEKNPENWQKGILFFLDKNSKNQTLEQRAAFRQASFAKKPELEA
                     KVEIQQNELHSSVIYPPIERFNNVMLEVTRGRNLACGYGQIQFADKREVGKTVAKKSP
                     NLTAYSQEIARLSLELNQLGWQVQCSK"
     gene            complement(2273..3049)
                     /gene="yaaA"
                     /locus_tag="PXC99_001051"
     CDS             complement(2273..3049)
                     /gene="yaaA"
                     /locus_tag="PXC99_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HDL5417515.1"
                     /translation="MLAIISPAKTLDFKTNIDGFAFSQPNLTACSQELIDICKQLSPA
                     ELGSLMSISDKLAALNVARFAEWQLEHNEQNAKAALFAFKGDVYTGLEAETLSKAQVE
                     YAQQHLRMLSGLYGLLKPLDLMQPYRLEMGTKLANPKGKDLYAFWGNIITENLQQAID
                     EQGDDILVNLASDEYYGAVKPQNLNATIIKPVFLDEKNGKYKVISFYAKKARGMMVRF
                     ILDTQPTSIEQLKQFNYGGYWFDADSSSESELVFKREEQA"
     gene            complement(3238..4958)
                     /gene="ltrA"
                     /locus_tag="PXC99_001052"
                     /pseudo
     CDS             complement(3238..4958)
                     /gene="ltrA"
                     /locus_tag="PXC99_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341372.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
     gene            complement(6640..7035)
                     /gene="rpsI"
                     /locus_tag="PXC99_001053"
     CDS             complement(6640..7035)
                     /gene="rpsI"
                     /locus_tag="PXC99_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HDL5417516.1"
                     /translation="MTAANQNYGTGRRKSSSARVFIKPGSGNITINQRSLEVYFGRET
                     ARMIVRQPLELVELTDKLDLYITVKGGGISGQAGAIRHGITRALMEYDETLRPALRAA
                     GFVTRDARRVERKKVGLHKARRRPQYSKR"
     gene            complement(7052..7480)
                     /gene="rplM"
                     /locus_tag="PXC99_001054"
     CDS             complement(7052..7480)
                     /gene="rplM"
                     /locus_tag="PXC99_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010847760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HDL5417517.1"
                     /translation="MKTFVAKPETVQRDWYVVDATGKTLGRLATELARRLRGKHKPEY
                     TPHVDTGDYIIVINADKVAVTGKKQTDKIYYWHTGYVGGIKDATFKEMIARRPEAVIE
                     IAVKGMLPKGPLGREMFRKLKVYAGSEHNHQAQQPQVLDI"
     gene            7779..8174
                     /locus_tag="PXC99_001055"
     CDS             7779..8174
                     /locus_tag="PXC99_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcB family protein"
                     /protein_id="HDL5417518.1"
                     /translation="MEQWTTDVWAAIMAAFIVGAVIGCTLVRVFNSSVRKQHELEKEL
                     KQTKTQVDEQKQKLEQHFEQSAQLLSSLASDYKKLYTHLAQSSEKLLPEASKNITFFQ
                     QTKLPIPAEKTEEDQPRDYSEGSSGLLKS"
     gene            complement(8335..9906)
                     /gene="guaA"
                     /locus_tag="PXC99_001056"
     CDS             complement(8335..9906)
                     /gene="guaA"
                     /locus_tag="PXC99_001056"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012510808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HDL5417519.1"
                     /translation="MTNIHHHKILILDFGSQYTQLIARRVREIGVYCELWAWDVTEEQ
                     IREFNPTGIILSGGPESTTEENSPRAPEYVFNAGLPVLGICYGMQTMAMQLGGLTETS
                     DHREFGYASVALKSADQLFANLNDDLTACEPKLDVWMSHGDKVTKLPPHFTITGVTPT
                     CPIAAMSDESRRFYGVQFHPEVTHTKQGLALLKNFVVGICGCETNWTAENIIEDAVKR
                     IREQVGDDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG
                     NKFGLNIVRVNAEDRFLEALKGLDEPEAKRKTIGKVFVDVFDDESKKLSSVKWLAQGT
                     IYPDVIESAASKTGKAHVIKSHHNVGGLPDYMKLGLVEPLRELFKDEVRKIGLALGLP
                     AEMLNRHPFPGPGLGVRVLGEIKKEYCDLLRKADAIFIEELHKAGWYYKVSQAFTVFL
                     PVKSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDLLGKISNRIINEVNGISRV
                     VYDVSGKPPATIEWE"
     gene            complement(9923..10234)
                     /locus_tag="PXC99_001057"
     CDS             complement(9923..10234)
                     /locus_tag="PXC99_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417520.1"
                     /translation="MKKLSLISIVALSACSIFGPSYSGETTASPLLKLDTERNINLYF
                     QAIHKCTPDKIHTKIINIPSEGNAKELWTATGCNKTQSFIITYRNDGVGGTFINMTTT
                     P"
     gene            complement(10356..11027)
                     /locus_tag="PXC99_001058"
     CDS             complement(10356..11027)
                     /locus_tag="PXC99_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HDL5417521.1"
                     /translation="MLQAIIFDMDGVIVDTEYLEFSLQKQFIEDIKEHSRPITLEQQS
                     EVVGKCLKEIPVIIKKLSESSLPIEEIRARYYAFFQDLFSKVDFKTIFRADIQQIIQF
                     AKQNQIKLAVASSSALSHIENILTVCGIKDEFDLIVSGEQFEHSKPDPTIYRYTCEKL
                     GVEPQNAVAIEDSYYGMLAAKTAGLTVIGYEEKRILIDQSLADYMGKDMKEILKILQK
                     CNTPS"
     gene            complement(11148..12611)
                     /gene="guaB"
                     /locus_tag="PXC99_001059"
     CDS             complement(11148..12611)
                     /gene="guaB"
                     /locus_tag="PXC99_001059"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HDL5417522.1"
                     /translation="MLRIKQEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPM
                     LSAAMDTVTETKLAISLAQEGGIGFIHKNMSIERQADRVRKVKKFESGIVSEPVTISP
                     DMTLAELAELVKKNGFAGYPVIDENQNLVGIITGRDTRFVTDLSKTVREFMTPKDRLV
                     TVKENASREEIFHLMHEHRVEKVLVVNNEFQLKGMITLKDYQKAESKPNACKDEFGRL
                     RVGAAVGAGPGNEERIDALVKAGVDVLLIDSSHGHSEGVLQRVRETRAKYPDLPIVAG
                     NIATAEGAIALADAGASAVKVGIGPGSICTTRIVTGVGVPQITAIAEAAAALKERGIP
                     VIADGGIRYSGDISKAIAAGASCVMVGSMFAGTEEAPGEIELYQGRAFKSYRGMGSLG
                     AMSKGSSDRYFQSDNAADKLVPEGIEGRIAYKGYLKEIIHQQMGGLRSCMGLTGCATI
                     EELRTKAEFVRISGAGIKESHVHDVTITKEAPNYRMG"
     gene            complement(12839..16006)
                     /locus_tag="PXC99_001060"
     CDS             complement(12839..16006)
                     /locus_tag="PXC99_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HDL5417523.1"
                     /translation="MKFTDIFIKRPVLAVCISLLITILGLQAIEKLQVREYPEMTVSI
                     VTVSVNYSGADARLMQTLVTSQLEEAVAQADNIDYMTSSSSPSTTTVTAKMKLNTDPN
                     AALSDISAKVNAVRSNLPSGIDDPSIRVSTGSNDALMYIRFVSDELNTSQVTDYINRV
                     VKPQFFTVNGVSSVDVYGSVFGLRIWLDPDKMASNNLSGAAVLSALSANNLQTAAGNS
                     NGYYTVYRNKVLSTTPSVTELEEVTVSTTKDGKTIKLKDIATVELDKYQDAARATVGG
                     KDAVVLAVSVAATANSLTVAKDIYPMFEQVLKNLPSTIQGDIVYDKTIAIDSSIKEVI
                     KTIGEATVIVLVVIILFLGSLRAMIVPVITIPISLIGVLFFLQMFGFSINLLTLLALV
                     LAIGLVVDDAIVVLENVERHVKEGKTPFDAAIIGTREIALPVISMTITLGAVYSPMAL
                     MTGVTGTLFKEFALTLAGAVFISGIAALTLSPMMSSRILKEHKEGEESAFARVVHRSL
                     DKMTSCYTNMLSGIMAVRGFVLFFAVLIFASLPMLFGSLSSEVAPTEDRGFVVGISNG
                     PSNTNLDYTEAALAQFNQEVTKLPEVSSLMTVSGFNGANSALSIIALKDWNDRSRERA
                     AISNDVAAIGKKVVGMDVNAIAFPEISTGENDLPFSLVITTADSYEKLAIVASEFLKK
                     AQTSGQFFFANLDLKFDTVTMNMKFDREKMGAYGVTMQQVSGTLGAFLSGAIITRVDI
                     DSRAYPIVSQAVRNDRLNPEDLMNYYVTTATGQSIPLGSFVTMELKTSPSSLPRMSQL
                     NSATIGGVVSGSIGDAVNWAKAELDRTLPSGYQYDFRGESRQFVQEGNAMAMTFALAV
                     IIIYLVLAIQFESWRDPLVILVSVPLAVSGALLVMNIPTAMKGLFMGIAAGTGSKDMM
                     AFANGIWTAGYTLNIYSQVGLITLVGLITKHGILMCEVAKEEQLLHGKSRYEAIFHAA
                     TIRLRPIMMTTAAMIAGLIPLLFAVGAGAIARFSMGMVIVAGLAIGTLFTLFILPVIY
                     TFLGQEHKPLREFDEEKYFPTTKEA"
     gene            complement(16020..17225)
                     /locus_tag="PXC99_001061"
     CDS             complement(16020..17225)
                     /locus_tag="PXC99_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HDL5417524.1"
                     /translation="MTTETQKLGKGRKFLIVLTLLIVLIVFAAIVGLQKIGAMKKAEA
                     AANMPEAVSEVTAMQVTTQEWTPTISAVGYIRPNQGAMLSAETSGVVSRVLVTSGQRV
                     KKGDLLVEFDSSVEIANLRASEAQLPNAKANLERYRNLIASNSASKAEFDNAQSTYNQ
                     LLANIEALRATIKRRQIYAPFSGLAGIVNVNVGQYITMGTEIVRVEDQSSMKVRFTLP
                     QTNLEQISIGQKVTAVIDALPAQTFPAKIVAIDPAVDRLTGLINVEAVIEEGQEKLLS
                     GMFARLNVALPTETGQIVVPQISIAYTMYGETVYVLQPLSDEDKEMVNKMAVQNPSLD
                     VNKMYRAKQMEVKTADRKGNYSQLSKGVKAGDLIVTGGLQRLSNNALVKVSDTEAVGI
                     TTPAKNSKL"
     gene            complement(17256..17828)
                     /locus_tag="PXC99_001062"
     CDS             complement(17256..17828)
                     /locus_tag="PXC99_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HDL5417525.1"
                     /translation="MSRRSEPKEEMVNRILSATESLIVQEGLQNLSMRSIAKEAGIAS
                     GTLYLYFKTKDDLLHSLAAQLLECYNGYMHFEFKPEMALFEQYKALVNKKWQFLIERL
                     DLVKQFQAVIGIDELIRETIADETSFWNKLILEGKKQRIIADLSNELLYGLSIGTLVD
                     IQYLQNLNQENQFDGYLDEIILRTWKAITF"
     gene            18067..18288
                     /locus_tag="PXC99_001063"
     CDS             18067..18288
                     /locus_tag="PXC99_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1414 domain-containing protein"
                     /protein_id="HDL5417526.1"
                     /translation="MATKSKYHTKQFEQLLADLIATIEKHKAPVDLSLMALGNMITNI
                     LIENIQSPAQREALADAFADALKQSLKTK"
     gene            18293..20026
                     /locus_tag="PXC99_001064"
     CDS             18293..20026
                     /locus_tag="PXC99_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3413 domain-containing protein"
                     /protein_id="HDL5417527.1"
                     /translation="MFARLRSLLPTNSRQYREETSQKITWGHWFALFNIVLALLISSR
                     YAFNADWPNTLVGKLYFFVSLFGHFSFVVFAGFLLILFPLSFIVKNHRTYRGLSVILA
                     TIGQTVLLVDTEVFKQFYLHLSPLVWDLLVNPEEGELTRKWQLLFVPMPLLLLAEMLY
                     SRWCWQKLRSFSRQKWGKYVALFFVISFTATHLIYAWADMNAYRPITAQRANYPLSYP
                     MTARNFLEKHGFIDRVEFNQEIEESGRLDTFYLNYPKSPLIATKTPSTNILLINLSGL
                     SKQIINAETMPKLTEISQQSHRFMQHYSSGDSASAGALGLFYSLSGKYLDSVLADKTV
                     SPLIEIARKSDYQLGLFSHNGFADPIYHQAIFSGILLPTAHSNVGAIGQWKNWISSRS
                     LENPFFSYLDLRMPFAHTAQEQAKLLDWQFAEIWQHLTQNALLANTLVIITADISNEV
                     GAENSFDKQHIQVPMMFYWQGESKEYHFLSSHLDIMPTLLSQFFGVQNPLNDYAQGMD
                     LSTQNQRLWVSSSNHKWNVAIMPNGDQYQIDRKGNFKHFNSNGEHEKDARPPLALFLQ
                     MIQQSNQFIEK"
     gene            complement(20093..20794)
                     /locus_tag="PXC99_001065"
     CDS             complement(20093..20794)
                     /locus_tag="PXC99_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5417528.1"
                     /translation="MIGQALGWRATFGIIGIIALIVLMMIWRLLPYLPSKNAGSIKSL
                     PLLFKRPMLIGIYLLVALIVSGHFTAYSYIEPFMIKISSVSVENTTFILLVFGLAGVV
                     ASFLFGRLYGKAPNKFILSGIAIIMCSQLCLLFLSDSTVAMFMVAFVWGIGITGMSIA
                     LQMKVLELAPDATDVATAIFSGTYNLGIGGGALLGSIAIQQLGLANIGFAGGSIAFVA
                     MVWFVFVSLKYRQLR"
     gene            complement(20791..>21061)
                     /locus_tag="PXC99_001066"
     CDS             complement(20791..>21061)
                     /locus_tag="PXC99_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5417529.1"
                     /translation="MKLARKAQRRLSFLRVFSLAFAAFIVNTTEFIPIALLSDIASSF
                     QMEPSSAGIMMTVYAWVVFLLSLPLMLLTANMERKRLLLMLFMGE"
BASE COUNT         6026 a         4755 c         3948 g         6332 t
ORIGIN      
        1 ggcattcatt caagatgatt tattactttg gtataactaa aagttataat aattcccagc
       61 ttagattaga gatcaaacgg caaggctcac atctaaaatg gaaaatatcg tgcaacggct
      121 cagttaattt ccattctccg ccacaacaag ggcatttgcg ttgatattca ctttcatcac
      181 gccctaaacg gtagaggtaa taaaaggtgg gaatgtgagt tttctgctca atttgctgac
      241 atagatctcg accgatcatt gcaagatcgc ttgtttcatc actaatttga acaagtgcgt
      301 ggcactccag cagattgccg ttcatttgta gcagatcgca cgcttgccaa ttttgctgcc
      361 attccaatat cgcttcgcta agagactgat cctgtaaaga ataaagcgga attggggcaa
      421 actgctctcc atcataaagt ggcgagcagg tatctaaatg ggtggtatat aatatttgaa
      481 acgctggcga gcggttatga ctgctttctt cgccctgata atctcgcccg acaagctcaa
      541 aacttgcaaa aattacgccg atttcgaccg cttgttgcaa cgcttcattt acttcatcac
      601 tattatattg tggcaaaagg ctttcttgtg taggcacaca aacccgagct tgaaactcgt
      661 tttgatgaaa agtaatcggc atttctctgc caatgacttg cccgttatat aaccattgat
      721 ttaagatttg gctaattgcc gtcaccggat cttgctcaaa attatgatag ctgaaatgca
      781 ctatcgcctg atacattaaa tattctccgc catatcttga aattcttgtt tgaccaccgt
      841 agtcggctct tgatgaataa tcacgtgaga catcggaaat gccgccagca atttctgctc
      901 aaggctatca gttatttcgt gagctactag cagcgttaag tgatcgtcta attccaaatg
      961 taattggata aaacgcactg cacctgcacg gcgggttaga atatcgtgaa tccctaaaat
     1021 gttcggatgt tgcgaagcaa tctctttaat ccgctcaatt tcttcatcgg gcaaagcttg
     1081 gtctagcaag gtttgcaccg cacaccaaaa catttttact gcattgaaag caatgtagag
     1141 ggcaatacct attgcaaaaa ctgcatcggc gtacacaaaa ccggcactat taagcaacat
     1201 tgccactaaa attgccgcat tcattaataa atcagtttgg taatgtaacg aatccgcttc
     1261 aatcgccgga cttttcgtaa gcgtgacaac ataacgctga taaaagacta aaagtgcagt
     1321 aatcacaatt gatacaatac tgacaattac cccaatactc gattgagcaa ttaattccgg
     1381 attggtgagt ttatggaaac cttgtagcag taggaaaacc gccgagccgg aaataaacgc
     1441 actttgggca agtgccgcca aagactccgc tttgccgtgc ccaaacgcgt gattctcatc
     1501 tgccggttgt agtgcaaaac gcagcactaa aatattggtt agcgaagcaa acagatccac
     1561 taccgaatcc gtcattgctg ccaagattga aatcgaaccg gttttccacc atgcaaaggc
     1621 tttaatcaca atcagtaaga tcgcaacaat aatcgctaaa ttcgctgcat ttttgactaa
     1681 tttgctgtat ttttcgttca tttactacat tatttactgc attggacttg ccaacccagt
     1741 tggtttaatt caagagaaag tctagcaatt tcttggctgt aagcggtcaa attcggcgat
     1801 ttttttgcaa ctgtcttgcc aacttcccgc ttatctgcaa attgaatctg cccgtaacca
     1861 caagctaaat tccgcccacg ggttacttct aacatcacat tgttaaaacg ttctataggt
     1921 ggataaatca cactgctgtg taattcattt tgctgaattt ccactttcgc ctcaagctcc
     1981 ggctttttcg caaaacttgc ttggcggaat gcagctcgtt gctctaaggt ttgattttta
     2041 ctgtttttat ctaagaaaaa taaaatgcct ttttgccaat tttccggatt tttctcactc
     2101 ttttctggca aataaagtaa atgttgcatt tcatcaattt ggctgtgggt gacttttaca
     2161 aaagtatcct gcccaaagtg aatagcatca ggcactgcaa attgtgggct ttggctgaca
     2221 caacctgcca atgataacgc aaccaaagtt attccctttt tgatagccga cattatgcct
     2281 gctcctcacg tttaaagact agctcgcttt cactagaact gtctgcatca aaccaatagc
     2341 ccccgtagtt aaactgtttg agctgttcga tgctagtcgg ttgggtgtct aatataaagc
     2401 gaaccatcat tccacgggct tttttggcat agaagctgat cactttatat ttaccgtttt
     2461 tctcatctaa aaacaccggc ttgataatag tcgcatttag attttgtggc ttaaccgcac
     2521 cataatattc atcagaggca agattaacta aaatatcatc gccttgttca tcaatcgctt
     2581 gctgcaaatt ttcagtaata atattgcccc agaaagcata aagatctttg cctttcggat
     2641 tggctaactt agtgcccatt tctaaacgat aaggctgcat taaatctaac ggctttaata
     2701 aaccatacaa gcctgaaagc atacgcaaat gttgttgagc atattcaact tgtgctttgc
     2761 ttaacgtttc tgcctctagt ccggtataaa catcaccttt aaaggcaaag agggcggctt
     2821 tggcattttg ttcgttatgc tcaagctgcc actcggcaaa gcgagccaca tttaaagcgg
     2881 ctaatttatc gctaattgac atcaaactac ctaattcagc aggtgaaagc tgtttacaaa
     2941 tatcaattaa ttcttggcta caagcggtca aatttggttg agaaaatgca aaaccgtcaa
     3001 tattggtttt aaaatcaagg gttttggcag gggaaataat ggctaacata aatgcctcta
     3061 tcaaatagtt aatcagggcg gttattctac cacagtcata aagacaaaaa aggcaggaaa
     3121 ccctgccttc ttgaaaacga aaagaaaagt cgggtagcga aagtacatta ctgcacctcc
     3181 gccccctaag aactgtacaa gcaaatttct ctgcatacag ctcaagcctt tcatcagcta
     3241 tatagccggc ttcacgacct ccaagttcaa agtatgaatc tttatgtgac aagtcggatg
     3301 taccaaacaa cgattgctta atgcatcgct tcctcctaac attttgtaca cgatatgatg
     3361 atcgtgccag cctgtttctt tggttattgg caacccacat aatgcacatt ttccacgctg
     3421 gtctttatac agtgcctgcc attgtcgtct gtgtgattgt tcttcataca gacgttcttg
     3481 gctcagtttt tcgccgtaca actcccattc aggcaaaaac ggattatatt cagacttaat
     3541 tttaacgtgt cgtttgattt taacatagcc acaatagaat aagtctatcg gcttagtttc
     3601 tcctttttca ttggtataaa ctgtgccaaa tacccaattt cgagtcgctg tggtacaaaa
     3661 gtatttctct tttatccaca taataccttt attgtgatga cggcgttcac accatttcca
     3721 aagtactttc caaactaatg cgtccattcg tccgaatgcc ttacttgcaa cttggcttcg
     3781 atgataattt gcccaacctc gtaacattgg gtttagcacc attataagat cttcctgttt
     3841 agccattttc atttagaaat tacctctttt accttgttgt agaacgcttt cacattcttt
     3901 tgacttggtc tgttcagtat ttttcctttg aaacgtctca cattccaacc tagaaaatca
     3961 aaaccttctt caatatgtac cactttcgtc ttttctgttg ataaggataa acctcgttca
     4021 ttcagaaagt tctggataag tgggataact tgattttcaa gtaactcttt cgttttacct
     4081 gatatgataa agtcatctgc ataacgtact aagtaagttt tattttctcg aattgtccga
     4141 ctgccttttc ctccaaaatg agtttctaac agtttttcca atccatctaa tgccatattt
     4201 gcaagcgttg gcgagataat cccaccctgt ggtgtacctt cctctgttcg tttcaaccgt
     4261 ccaaattcca ctacacctga ttttagccat ttccgcaata tccgtttatt cattggaata
     4321 tgctttaata gccagtcgtg gcttatgtgg tcaaaacaac ctgcaatatc cgcatcaagt
     4381 acccactcaa caggttgatt agttttcttg cctttatgcg aataaattta gtgtatatga
     4441 gtaatagcat ctaccgttga acggtttaat ctaaatccat aagaaccttt atccgcagtt
     4501 gtttctgcca caggttgtat tgccaataaa taaagggctt gcattgctct atctcgcatt
     4561 gttggaatac ccaacggacg tttctttcca ttcggtttgg ggatatacac tcgtcttaat
     4621 ggactaggtt tatacccttt ttccgtcaat gatagtgcgg cttgccattt tgtctctggg
     4681 gtctcccaaa gctctttatc gacaccactt gttcgcttac cttgattttc agtcactctt
     4741 cttactgcaa ctaatttagc ataatgtgag tgggttagca ttcgttgtaa gtttttaacc
     4801 ttacgccaat tgccttccag tgttgccttc gcaatccgaa tttgcattcc tttcacatac
     4861 gtttcagctt tatgccaatc gacataatgc catttggaga tgtgcgaggt cgctggattg
     4921 caagctaact tttcagtata atgcttacgc tctttcatac ctacctctga tattacaaga
     4981 taagtcgaaa gtctcagcaa gtgggtagat ccttcaagta aacaaatccc tattgagata
     5041 aactatcctt agtttattcc ctttggttac aagaggatct taccgtttta ccgataattt
     5101 caaccgctct tgtaaccgat tgggttaaag agtcgagcgc taggttatga tgagcctaac
     5161 gctcatttct ttaatttgtt tttgtaccta ttcaacattg tattccttga taacattcaa
     5221 tttctcttct gttatctaca atctctttcg gtgttaccct taaaggaaac gctattcatc
     5281 ttacgatgaa agaccagtta gaagtctgca ccctttcggg ttaggctatg tttcacaccc
     5341 tatctatgcc attacagcat agcattcgct ttttctaacc tcccttacct gcattcccaa
     5401 cagtatcgct tacgctttac ttgccttttc ctcttttacc ttcgccatct atttcaaacg
     5461 gtttgagtat tgtgggcaag gcagaaatac aggcttacca agttccatta ctatcacacg
     5521 agtagtgaag atacagtctc tcccccgaca gtgctttgat ggcgtatcct cacgttaaag
     5581 aagaataacc gactgcctac cttttggtca gagcctatca atagctttgg ctctctctcg
     5641 ataacgaggt ttatcaactg ttcacttacg tttatctttc tacccagtct agccccttga
     5701 aggtgtgcta ttcactttct cccaatgtcc tctcacgatt tcattgactg attttcatca
     5761 ggggttcatt gtcaggaagc tccgcaccac accgttaccg gtgtcgcact atccctagac
     5821 tactgttagc catataacag gttaccttat cattccctcc gtactactca tatcttcgga
     5881 ttgtttgacc gtaacaatga cagtaatagc ttacgcatac ttactaagtc agtatcctat
     5941 actgcataaa taagtccgaa cctttacaaa ataaattcac ttatgcgact aaagtcgctt
     6001 tgtctatatc caaattttcc cgcaaatagc ctataacctg tccaataggc gaaggtagct
     6061 aaccctagct aatgtgagta ttagaggtga ttttaacgag aatttaaggt ataattatcc
     6121 ctagctcata aaaacgaata aacaagagtt tatccttagt gtttttattc actattgagg
     6181 agcattctac gattaccgta gattgcgagt gtgaaaagta taagtaaaga tggcactcct
     6241 tccctaagat ttaccaagtc ttagttctga tgtcttttct gagtgctgag gcgatctatt
     6301 ggactttatt tatagtaggt gttgtaaatt ttctctgctc tggggtatgg gtaactccgg
     6361 tctgcggatc ttgctttctt actctatctt ggtattaaga aaaaaaccaa gtacatcaaa
     6421 gtgaagatca taccttacag cctttcgagt tggttcattt actttcccaa cttagaacaa
     6481 gagtgcttgg gcaaagcccc ttttctcttg cctgtctttc caagcactcc gaagagtgct
     6541 tggaaagtcg gaagcaggtg ataagaatac cacccacttc cagcaataac tccttgatat
     6601 ataaggagtt attgccataa gtacgacaac ttgtcgcact taacgttttg agtattgtgg
     6661 acgacgacgt gctttgtgta aacccacttt tttacgttca acgcgacgtg cgtcacgagt
     6721 aacgaagcct gctgcacgaa gtgctgggcg tagcgtttca tcgtattcca ttaatgcacg
     6781 agtgataccg tgacggattg cacccgcttg accagaaata ccaccacctt taacagtgat
     6841 gtaaaggtct aatttatcag ttaattcaac caattctaac ggctgacgta cgatcatacg
     6901 agctgtttca cgaccgaagt aaacttcaag tgaacgttgg ttgatagtaa tgttacctga
     6961 acccggtttg ataaatacac gggctgaaga gcttttgcgg cgacctgtgc cgtagttttg
     7021 atttgctgct gtcattttta tgctccgtga attagatatc taaaacttgt ggttgttgtg
     7081 cttggtgatt gtgttctgaa cctgcgtaaa cttttaattt acggaacatt tcacgaccaa
     7141 gtggaccttt tggtaacata cctttcactg cgatttcaat cacagcttca ggacgacgag
     7201 caatcatttc tttgaaggtt gcatctttga tgccacctac atagccagtg tgccagtagt
     7261 agattttgtc agtttgtttt ttacctgtta ctgctacttt gtctgcattg atcacgatga
     7321 tgtaatcacc ggtatcaacg tgtggagtgt actcaggttt atgtttacca cgaagacggc
     7381 gtgccaattc agtcgctaaa cgacctaatg ttttacccgt cgcatctact acataccagt
     7441 cacgttgtac tgtttctggt tttgctacaa aagttttcat taattaaata ccaaatttaa
     7501 agtttaaaac ccaatacctc attgaggtat ttcctattat tttacggtga acccgacccc
     7561 ttcgagtctg attcagacca aacttgtgtg gcggggaaaa ccacacaaaa acagggtggc
     7621 gaaattatac agagatttca ctcaaaaatc taacattttt tgctgataat ctttcaaaat
     7681 tgaacctata tcacatttta atcatttgga gcttttcaaa taaaaactga aatgttaaaa
     7741 atagcagtaa tcaatcacta aaacataagg agtttatgat ggaacaatgg acaacagatg
     7801 tttgggcagc cattatggca gcatttattg taggtgctgt aataggttgc actctagtta
     7861 gagtatttaa cagtagtgtc agaaaacagc atgaactgga aaaagagttg aagcaaacca
     7921 aaactcaagt ggatgagcaa aaacaaaaac ttgaacaaca ctttgagcaa tcagcccaat
     7981 tactttcaag tctagcttct gattataaaa agctttatac ccatttagca caaagctctg
     8041 aaaagctatt accagaagca tcaaaaaata ttaccttttt ccaacaaacc aaattaccta
     8101 ttccggcaga aaaaacggaa gaagatcaac ctagagatta ttccgaaggt tcatctggct
     8161 tactgaaatc ataaaactaa aaattgaata tttagtttta ctaaaaggca cttagtttaa
     8221 ggattgattc cgttggaatc aatcctttat tctaaaccgc tacattaagc agttaacaac
     8281 atttttcagc tttagatact gaacttaggt tataagaagc ctattttgta agagttattc
     8341 ccactcaatg gttgccggtg gttttccgct cacgtcatac accacacggg aaataccgtt
     8401 cacttcgtta ataatgcggt tggagatttt gcctaataga tcatacggca agtgcgccca
     8461 gtgagcggtc ataaagtcga tggtttccac cgcacgcagg ctgacgaccc agtcatattt
     8521 gcgtccatcg cccattacgc ccaccgattt caccggcaag aataccgtga aagcttggct
     8581 gactttgtag taccagccgg ctttgtgcag ttcttcgatg aagatcgcat cggctttacg
     8641 cagtaaatcg cagtactctt ttttgatttc gcccagcaca cgcacgccta agcccgggcc
     8701 ggggaacggg tggcggttga gcatttcagc tggtaagccg agtgccaagc cgattttgcg
     8761 cacttcgtct ttaaacaatt cacgcaacgg ttcgactaag ccgagcttca tataatccgg
     8821 caagccgcca acgttatggt gtgatttaat cacgtgggct ttgccggttt tgctggcggc
     8881 ggattcaatc acatcagggt agatcgtgcc ttgtgcaagc catttgaccg agctaagttt
     8941 tttgctttcg tcatcaaaca cgtccacaaa cactttacca atggttttgc gtttagcttc
     9001 cggttcgtct aagcctttta acgcttctaa gaaacggtct tcggcattca ctcgcacaat
     9061 gttcaaaccg aatttgttgc cgaacatttc catgacttga tcgccttcgt tcaagcggag
     9121 caagccgtta tccacaaata cgcagtgcag gtttttaccg atagcacgat gtaatagcaa
     9181 ggcggtgacg gaggaatcca ccccgcccga caaacctaaa atcacctcgt catcgcccac
     9241 ttgctcacga atgcgtttca ccgcatcttc aatgatgttt tctgccgtcc agttcgtttc
     9301 acagccgcaa atgccgacca cgaagttttt cagcaacgcc aagccttgtt tggtgtgggt
     9361 cacttcgggg tggaactgca cgccatagaa acggcggctt tcgtccgaca tcgcggcaat
     9421 cgggcaggtt ggggtaacgc ctgtgatggt aaagtgcggt ggtaatttgg tgactttgtc
     9481 gccgtgactc atccacacgt ccaattttgg ctcgcaagcg gtcaaatcat cgtttaaatt
     9541 tgcaaaaagt tgatcggcag atttgagagc caccgaggca tagccaaatt cacggtggtc
     9601 ggacgtttcg gttaaaccgc ccaactgcat cgccattgtc tgcattccgt agcaaatgcc
     9661 cagcactggc agaccagcgt taaacacata ctccggcgct cgtgggctgt tttcctcagt
     9721 ggtgctttca ggacctcctg aaagaataat ccccgttggg ttaaattcac ggatctgctc
     9781 ttccgttacg tcccaagccc aaagctcgca gtaaacccca atctcccgca cacggcgtgc
     9841 gataagctga gtatattgtg aaccgaagtc taaaattaaa attttgtggt ggtggatgtt
     9901 tgtcattgta atttccttta aattatggcg ttgtggtcat gttaataaaa gtgccgccta
     9961 ccccatcgtt tctatatgta ataataaaag attgcgtttt attacaacct gttgcagtcc
    10021 aaagttcttt tgcattacct tcacttggaa tattgatgat ttttgtatga attttatcag
    10081 gagtacattt atgtattgct tgaaaataca gatttatatt tctttctgtg tccaacttta
    10141 ataaaggact ggccgttgtt tctcctgaat aagatggtcc gaaaatactg cacgcagata
    10201 aagcgacgat tgaaattaaa cttaattttt tcattctatt tatcctatta atattaaaat
    10261 atccactctc atttctaggt tactcaagcc gatagactgt tccaagtact tgaagtagaa
    10321 acattgacaa aatttctata aaaatcgacc gtttattaac ttggagtatt acatttttga
    10381 agaatcttca aaatctcttt catatctttg cccatataat ccgctaaact ttggtcaatc
    10441 agtattcgtt tttcttcgta accaatcacc gttaagcctg cggttttggc ggcgagcatt
    10501 ccgtagtagg agtcttcaat cgccactgca ttttgtggct caacgcctaa tttttcgcag
    10561 gtgtagcggt aaatggttgg gtctggcttg ctgtgttcaa actgttcacc gctgacgatt
    10621 aaatcaaatt cgtctttaat gccgcaaacc gtgagaatat tttcaatatg cgaaagggcg
    10681 gaagaagagg caaccgcaag cttaatttga ttctgcttgg caaattgaat aatttgctga
    10741 atatcggctc tgaaaatggt tttaaaatcc actttgctaa acagatcttg gaaaaaggcg
    10801 tagtaacgtg cacgaatttc ctcaatcggc aaactggatt cgcttagttt tttgataatc
    10861 accggaattt cttttaaaca tttgcctacc acttccgatt gttgttctaa agtaatcggg
    10921 cggctgtgtt ctttgatgtc ttcaataaac tgtttttgta aggaaaattc cagatattcg
    10981 gtatccacaa tcacgccgtc catatcaaaa atgatagctt ggagcatata gcctcttttg
    11041 taaaatttta agaaaatcta accacttatt ccctctctct gttttaaatt actgaacgta
    11101 atttaaaacg gtctctctcc cacaagggga gagagtgaga aaggctatta acccattcgg
    11161 tagttcggtg cttctttggt aattgtcaca tcgtggacgt ggctttcttt aataccagca
    11221 ccactaatgc ggacaaattc tgctttggtg cggagttctt caatagtggc acagccggtt
    11281 aatcccatac aggagcgtaa gccgcccatt tgttggtgga taatttcttt caagtagcct
    11341 ttgtaagcga tacgcccttc aatcccttcc ggtacgagct tgtcggcggc attatcagat
    11401 tggaaatagc gatctgacga gcctttactc attgcaccta atgatcccat tccacggtag
    11461 gatttgaatg ctctgccttg ataaagctca atttcacccg gggcttcttc tgtgccggca
    11521 aacatcgaac cgaccattac gcaacttgca ccggcggcaa tagcttttga aatatcgcct
    11581 gaataacgaa ttccaccatc agcaatcaca ggaatgcctc gttctttaag cgcagctgcc
    11641 gcttctgcga ttgccgtgat ttgtggcacg ccaacgcctg ttacaattct ggtggtacaa
    11701 attgaacccg ggccgattcc tactttcaca gcactggctc ctgcatcagc taacgcaatc
    11761 gctccttctg cagtggcaat attaccggca acaatcggta aatcagggta ttttgcacgg
    11821 gtttcacgca cacgttgtaa tacaccttca gaatgcccgt gcgaagagtc gattaatagc
    11881 acatcgacac ccgcttttac taaagcatca attcgttctt cattgcccgg accggctccc
    11941 actgccgccc ccacacgcaa acgcccaaac tcatctttac aggcattcgg tttgctttcc
    12001 gctttttggt agtcttttag ggtaatcatt ccttttaact gaaattcatt attcactacc
    12061 agcactttct ccactcggtg ttcgtgcatt aagtggaaaa tttcttcacg gcttgcgttt
    12121 tcttttaccg tcactaaacg gtcttttggt gtcataaatt cacgcactgt tttgcttaaa
    12181 tccgtgacaa atcgggtatc acgtccggta ataattccca ctaaattttg gttttcatca
    12241 atcaccggat agcctgcaaa accgttcttt ttcaccaatt cagccaattc cgctaatgtc
    12301 atatcaggag aaatcgtcac tggctcagaa acaataccac tttcaaattt tttcacttta
    12361 cgcacacggt ctgcctggcg ttcaatcgac atatttttat ggataaaacc aatgccgcct
    12421 tcttgagcaa gggagatcgc aagcttagtt tctgtaacgg tatccattgc agcagaaagc
    12481 atcggaatgt ttaaacgaat ggttttagtt aattgagtag aaagatcagc agtattagga
    12541 agcacagtag aatgtgccgg gacgagaaga acatcatcaa aagtgagggc ttcttgttta
    12601 attcgtagca ttgcaattat tccttaaaaa atgattaaat tgaaaatctg tactggaaaa
    12661 ttgcgagcgg attatacaga ggaactaggt ttctgtaaat agggaaacgt ttacgctatc
    12721 tgaaaatata ctttcaagcg gttaaatttt gtgatttttt agcaaacaat aaataaaaaa
    12781 cgaccgcttg taagccaaca aaaaagagcg tatcgctacg ctcttttgct atttaaaact
    12841 atgcttcttt tgtcgttggg aaatattttt cctcgtcaaa ttcacgtaat ggcttgtgtt
    12901 cttgccctaa gaaagtgtag ataaccggca agataaacag agtaaacaat gtcccgattg
    12961 ccaagcctgc tacgattacc atacccatac tgaagcgggc gattgcaccg gcacccaccg
    13021 caaacagaag cggaattaag cctgcaatca ttgctgccgt tgtcatcata attgggcgta
    13081 aacgaatcgt ggctgcgtgg aaaatagctt catagcgtga tttgccgtgc agtaactgct
    13141 cttctttcgc cacttcacac atcaagatac cgtgtttagt aattaagccg acaagggtaa
    13201 ttagacctac ttgtgaatag atatttaagg tataacctgc cgtccaaata ccgttggcga
    13261 atgccatcat atctttcgag ccagtgcctg ctgcaatccc cataaacaag cctttcattg
    13321 cggttggaat gttcattacc aacaatgcac cactcacagc taacggcaca gaaaccaaaa
    13381 ttactaatgg gtcacgccaa gattcaaatt gaattgcaag tacaagatag ataatgataa
    13441 ctgctagagc gaaagtcatt gccatcgcat taccttcttg aacgaactgg cgagattcac
    13501 cacggaagtc atattgataa cctgatggta aagtgcgatc taattctgct ttcgcccaat
    13561 ttaccgcatc gccgattgag ccagatacta ccccaccaat ggtggccgag tttaattggc
    13621 tcatacgagg taaagaagat ggtgatgttt ttaattccat cgtcacaaat gaacctaacg
    13681 ggatagattg ccctgttgca gtcgtgacat agtaattcat taaatcttca ggatttaaac
    13741 gatcattacg caccgcttgc gacacaatcg ggtaagcacg agagtcaata tcgacacgag
    13801 taataatcgc accggataag aatgccccta atgtgccact cacctgctgc attgtcacgc
    13861 cataagcacc cattttttca cggtcgaatt tcatattcat cgtgaccgta tcaaatttca
    13921 aatctaaatt cgcaaagaag aactgaccgg aagtttgggc ttttttcaag aattcagagg
    13981 caacgattgc caatttttca tagctatcag cggtagtaat cactaatgag aatggtagat
    14041 cattttcacc ggttgaaatt tcagggaatg caattgcatt cacgtccata cccaccactt
    14101 ttttaccgat tgcagccaca tcattagaaa tcgcagcacg ttcacggcta cgatcattcc
    14161 aatcttttaa tgcaataatc gataatgcac tatttgcacc attaaagcct gaaactgtca
    14221 ttaaggaaga tacttcaggt aatttagtta cttcctgatt aaattgggct aacgctgctt
    14281 cggtataatc taaattggtg tttgaaggtc cattagaaat accaaccaca aagccacggt
    14341 cttctgtcgg tgcaacttca ctggaaagtg agccaaataa catcggtaaa ctggcgaaga
    14401 tcagcaccgc aaagaataag acgaaaccac gaacagccat aataccgctt agcatattgg
    14461 tatagcagct ggtcatttta tctagtgatc tatgcaccac gcgggcaaat gctgactctt
    14521 ccccttcttt atgttctttt aatattcggc tagacatcat cggcgaaagg gttaatgccg
    14581 caatccccga aataaatacc gcaccggcaa gcgttaaagc gaactcttta aatagtgtcc
    14641 ctgttacccc ggtcattaat gccattggtg aatatactgc acccagagta atagtcattg
    14701 aaataaccgg taaagcaatt tcacgtgtac cgataatcgc tgcatcaaat ggcgttttac
    14761 cttctttaac gtgacgttct acgttttcaa gtacgacaat cgcatcgtcc actaccaagc
    14821 cgatcgctaa taccaacgcc agcaaagtaa gcaagttgat cgagaaacca aacatttgca
    14881 ggaagaataa taccccgatt aaggaaatcg gaatggtaat caccggtaca atcattgctc
    14941 gtaatgaacc taagaacagg ataattacta ccaatacaat gacggttgcc tcaccaatag
    15001 ttttaattac ttctttgata gaactatcaa tcgcaatggt tttatcgtaa acaatatctc
    15061 cttgaatggt gcttggtaga ttttttaata cctgctcaaa catcggataa atatctttcg
    15121 ctacggttaa agagtttgcc gttgcggcta ccgaaacagc aagcacaact gcatctttac
    15181 cgccaaccgt tgctcttgct gcatcttggt atttatccag ctcaacagtc gcaatatctt
    15241 ttaatttgat ggtttttcca tctttggtgg ttgaaaccgt aacctcttct aactctgtca
    15301 cagaaggcgt ggtagaaagt actttgtttc tataaaccgt atagtaaccg ttagaattac
    15361 ccgcagcggt ttgcaagtta ttggcactta atgccgataa tacagccgcc cctgataggt
    15421 tattgctcgc cattttatcc ggatcaagcc agatgcgtaa gccaaaaaca gagccataca
    15481 catcaacgct agaaacacca tttaccgtaa agaactgtgg ttttactaca cggttaatat
    15541 aatcggtaac ttgtgatgta ttaagttcat cagagacaaa tcggatatac attaacgcat
    15601 catttgaacc ggttgagact ctaattgacg gatcatcaat accgctcggt aaatttgagc
    15661 gtaccgcatt cacttttgcc gaaatatcgg aaagtgcggc attcggatcg gtatttaact
    15721 tcatttttgc cgttaccgta gtggtacttg gagagcttga tgaagtcata tagtcaatat
    15781 tatccgcttg agcaacagcc tcttctaact gtgaggtaac cagtgtctgc attaaacgtg
    15841 catctgcacc tgaatagtta acactcacgg ttacaatcga gaccgtcatc tccggatatt
    15901 cacgcacctg caatttttcg attgcttgca agcctaggat cgtaatcaat aggctgatac
    15961 aaactgccaa aacaggacgt ttaataaaga tgtcagtaaa tttcacttaa ctcactccac
    16021 tacagtttac tgtttttcgc cggtgtggta atgcctacgg cttctgtatc agaaacttta
    16081 accaacgcat tattacttaa acgttgtaaa ccgcctgtta caatcagatc acctgctttc
    16141 acgcctttgg ataattgtga atagtttcct ttgcggtcag ccgttttcac ttccatctgt
    16201 tttgcacggt acattttgtt tacatctaaa cttgggtttt gtaccgccat tttgttcacc
    16261 atttctttat cttcatcaga taatggttgc agcacatata ccgtttcacc atacatagtg
    16321 taagcgatag aaatttgtgg tacgacgatt tgtccggttt ctgttggtaa agcaacattt
    16381 aagcgggcaa acatacctga aagcaatttt tcctgccctt cttcaatcac cgcttccaca
    16441 ttaattaagc cggttaaacg atccacagcc ggatcaatag ccacaatttt agctgggaag
    16501 gtttgtgccg gtaacgcatc aattacggct gtcacttttt gcccaatcga gatttgctct
    16561 aaattagttt gcggcaaggt aaaacgtact ttcattgaag attgatcttc cacacgcaca
    16621 atttccgtac ccattgtaat gtattgccca acattcacat tcacgatacc cgctaaacca
    16681 ctaaacggag cataaatttg acggcgttta atcgtagcac gcaatgcctc gatattggct
    16741 aataattggt tgtaggtaga ttgagcatta tcaaactcgg ctttagaagc actgtttgag
    16801 gcaatcagat tacggtaacg ctctaaattt gctttggcat tcggtaattg cgcttcagag
    16861 gctctcaagt tagcaatttc aacactgctg tcaaattcta ctaacagatc accttttttc
    16921 acacgctgtc ctgaagtgac caaaacacgg ctaaccacgc ctgaagtttc agcacttaac
    16981 attgcccctt gatttgggcg aatataaccg accgcagaaa tggttggtgt ccattcttgg
    17041 gtcgtcactt gcatagcagt aacttcgctc accgcctccg gcatatttgc cgctgcttcg
    17101 gcttttttca ttgccccgat tttttgtaac cctacgattg cagcaaacac aatcaatacg
    17161 attaacaatg tgagtacaat taaaaacttt ctgcctttac ccagcttctg tgtttccgtt
    17221 gtcatacatt ctccataaaa ctaataaaaa gaaacttaaa aagtgattgc tttccaagtg
    17281 cgtaaaataa tctcgtctaa atatccatca aactgatttt cttgattcag attttgcaga
    17341 tattggatat ccaccaatgt gccgatgctt aatccataaa gcaactcatt agatagatca
    17401 gcaataatcc tttgcttttt cccttctaaa attaatttat tccaaaagga agtttcatca
    17461 gctatggttt cccgaatcaa ttcatcaatc cctatcaccg cttgaaactg ttttaccaaa
    17521 tctaaacgct cgattaaaaa ctgccatttt ttattgacca acgctttata ttgctcaaat
    17581 aacgccattt caggcttaaa ctcaaaatgc atataaccgt tataacattc gagtaattgg
    17641 gcagccaatg agtgcaataa atcatctttg gttttaaagt aaagatataa tgtaccggaa
    17701 gcgatccctg cttcttttgc aatactacgc attgaaaggt tttgcaaacc ttcttgcaca
    17761 atcagcgact cggttgccga taaaatacgg tttaccatct cttcttttgg ctcgcttcgc
    17821 ctagacattt tatctcctta cctataatga acagccgttc attatagctt tttttatgaa
    17881 aaaagaaagc agaaaacacc tatcaaatta aaataaaata gttgcaaaat tcctcattta
    17941 ttgaacaagc ggtcattttt ggctaaaact ttgcaaaaat cactcaaaca ataacgctta
    18001 acgctacttt attattattt ttgtgctact atttgtacct aattatagga tcatctttat
    18061 ttcaatatgg caacgaaatc taaataccac accaaacaat ttgagcagct attggctgac
    18121 ctcatcgcca ccatagaaaa gcataaagca ccggtggatt tatcgttaat ggcattaggc
    18181 aatatgataa ctaacatttt aattgaaaat attcaaagcc cggcacaaag agaagctctc
    18241 gctgatgcct ttgccgatgc attaaaacaa tcactaaaaa ccaaataaga tgatgtttgc
    18301 acgcctacgc agtttattgc cgaccaattc tcgccaatat cgagaagaaa cctcacagaa
    18361 aatcacgtgg gggcattggt ttgcactatt taatattgtg ttggcactac tcatttcctc
    18421 tcgttacgca tttaatgcag actggccgaa cacgcttgta ggcaaacttt atttctttgt
    18481 cagcctgttc gggcatttca gctttgtggt ctttgcagga tttctattaa ttctgtttcc
    18541 gctcagtttt attgttaaga atcatcgcac ctatcgtggg ctttccgtga ttttagccac
    18601 catcgggcaa accgtgttat tggtggatac tgaagtcttc aagcaatttt atctgcattt
    18661 atcaccgctt gtatgggatc tgttagttaa tccggaagaa ggggaactga cccgtaaatg
    18721 gcaactgctg tttgtaccaa tgccactcct tttgctggca gaaatgctct actctcgctg
    18781 gtgctggcag aaactgcgta gttttagccg ccaaaaatgg ggcaaatatg tcgctctctt
    18841 tttcgtgatc agctttaccg ctactcattt aatctatgcg tgggcagata tgaatgccta
    18901 ccgcccgatt accgctcaac gagcaaacta cccactttct tacccgatga cggctcgtaa
    18961 tttcttagaa aaacacggtt ttattgaccg agtagaattt aatcaagaaa ttgaagaaag
    19021 tggcagacta gatactttct atctgaatta tccaaaatct cccttgattg cgaccaaaac
    19081 gccctcaact aatattttac tgattaattt atcaggttta tctaaacaga taataaatgc
    19141 cgaaacaatg cctaagctga cagaaatcag ccaacaaagc caccgcttta tgcagcatta
    19201 cagtagtggt gattcagcct ctgccggtgc attaggtcta ttttacagtt taagcggtaa
    19261 atatttggat tccgttttag ccgataaaac cgtgtcaccg cttatcgaaa tcgctagaaa
    19321 atcggactat caattagggc tgttttcaca taatggtttt gccgacccga tttatcatca
    19381 ggcgatcttc tctggtattt tattgcctac ggcgcacagt aatgtagggg cgattgggca
    19441 atggaaaaac tggatcagct ctcgctcatt ggaaaatccg ttctttagct atttagactt
    19501 aagaatgccc ttcgcccaca ccgctcaaga gcaggcaaaa ttattagatt ggcaattcgc
    19561 tgaaatctgg caacatttga cccaaaatgc actattggcg aatacgctgg taatcattac
    19621 cgccgatatt agtaatgaag ttggagcaga aaatagcttc gataaacaac acattcaagt
    19681 gccgatgatg ttctactggc aaggcgaaag caaagagtac catttccttt caagccattt
    19741 agatattatg ccaaccttac tgagccaatt cttcggcgtg caaaatccgc tgaatgatta
    19801 tgcacaaggt atggatttaa gcacccagaa ccaacgttta tgggtatcca gttctaatca
    19861 caaatggaat gtggcgatta tgccgaatgg cgatcaatat caaattgatc gtaaaggcaa
    19921 ctttaagcac tttaacagca atggcgaaca cgagaaagat gctcgaccac cattagcgtt
    19981 gttcttacaa atgattcaac aaagcaatca atttattgaa aagtaatgtt caacaagcgg
    20041 tcatttttgc aggaaaattt gcaaaatttc agcaaaatat gaccgcttgt cactatctga
    20101 gctgtctata tttcaagcta acaaatacaa accaaaccat tgctacaaaa gcaatactcc
    20161 caccggcaaa tccgatattg gctaatccca gttgctgaat agcgatgctc cccagtaatg
    20221 ctccaccgcc aatgcctaaa ttataagtgc cggaaaaaat tgcagttgcg acatcagtcg
    20281 catcaggggc aagttcaagc accttcattt gcaacgcaat gctcattccg gtaatgccaa
    20341 ttccccagac aaaagcgacc ataaacattg ccactgttga gtcactcaaa aacagtaaac
    20401 aaagctggct gcacataata atggcgatcc cgcttaagat aaatttattc ggggctttgc
    20461 catataaccg accaaataaa aaacttgcca ccacacctgc caagccaaaa accagcaaaa
    20521 taaaggtggt gttttccaca ctcaccgaac tgattttaat cataaacggc tcaatatagc
    20581 tgtaagcggt aaaatgtcct gaaacgatca atgccaccag caaataaatg ccgattaaca
    20641 tcgggcgttt aaataacaaa ggcaaacttt ttatcgagcc tgcatttttg cttggtaaat
    20701 aaggcagcaa ccgccaaatc atcattagca caatcaaagc gataatccca ataatgccaa
    20761 aggttgcccg ccagcctaag gcttgcccga tcattcgccc ataaataaca tcagcaacag
    20821 ccgttttctt tccatattcg ccgtgagtaa catcaacggt aacgataata aaaataccac
    20881 ccacgcataa accgtcatca taatgcctgc cgatgaaggc tccatttgga aactgcttgc
    20941 aatgtctgaa agcaatgcaa taggaataaa ttcggtggtg tttactataa aagccgcaaa
    21001 ggcaagacta aatactctaa ggaacgataa tctccgttga gcttttcgag caagtttcat
    21061 a
//
LOCUS       DANLVT010000034        20587 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.034, whole genome shotgun sequence.
ACCESSION   DANLVT010000034 DANLVT010000000
VERSION     DANLVT010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20587)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20587)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20587
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.034"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            56..1564
                     /locus_tag="PXC99_001067"
     CDS             56..1564
                     /locus_tag="PXC99_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDL5417530.1"
                     /translation="MSNQSSNAPQRETFSGRGAFIMAAIGSAVGLGNIWRFPYTTYEN
                     GGGAFILPYIIALLTAGLPLLFLDYSIGHKYRGGAPLAFRRFSSKFETFGWWQVLINV
                     IIGIYYAVVLGWAASYTYFSFSGAWGDKPVDFFIGEFLKMGDITQGVSFEFVGMVTGP
                     LIAVWLIAIAVLAMGIKKGISAASNLLMPQLIVMFLVLVGYSLTLPGAAKGLDALFTP
                     NWEKLADPSVWIAAYGQIFFSLSICFGIMITYASYLKKETDLTGSGLVVGFANSGFEL
                     LAGIGVFAALGFMATAAGQEVNEVAKGGIGLAFFAFPTIINQAPMGALVGVLFFGSLT
                     FAALTSFISVIEVIISAVQDKLNSGRVKATLLVGIPMMVVSVLLFGTTTGLPMLDVMD
                     KFVNQFGIVAVAFVSLIAIVTSEKLSTLEKHLNEVSSFKVGFIWRLCIVITSGVLAFM
                     LFSEIAKVYREGYEGYPSWFVNTFGWGMAIGLVVVAYLLSKMAWKNEPKGDE"
     gene            1564..1662
                     /locus_tag="PXC99_001068"
     CDS             1564..1662
                     /locus_tag="PXC99_001068"
                     /inference="COORDINATES: protein motif:HMM:NF028261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine/alanine import family NSS transporter
                     small subunit"
                     /protein_id="HDL5417531.1"
                     /translation="MSSAAIITMVVAMTIIWGGLLFAIKRLPKEEQ"
     gene            complement(1710..1973)
                     /locus_tag="PXC99_001069"
     CDS             complement(1710..1973)
                     /locus_tag="PXC99_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GrxA family glutaredoxin"
                     /protein_id="HDL5417532.1"
                     /translation="MFVEIYGRLSCPYCVRAKTLAEKMKQELSDFDFKFIDMIAENIS
                     KQDLEPRVGKPVATVPQIFVDNNHVGGCTDFQAFVEEKFGITV"
     gene            2133..3467
                     /gene="srmB"
                     /locus_tag="PXC99_001070"
     CDS             2133..3467
                     /gene="srmB"
                     /locus_tag="PXC99_001070"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase SrmB"
                     /protein_id="HDL5417533.1"
                     /translation="MTQLMTFEELDLSPQLLKALAHKGYNRPTAIQQATIPAALEGRD
                     LLGSAPTGTGKTAAFLLPAIQHLLDYPRRKPGAPRILILTPTRELAMQVAEQAQALAK
                     FTQLSIATITGGVAYQNHGEVFNKNQDIVVATPGRLMQYIKEENFDCRAVEVLIFDEA
                     DRMLQMGFGQDAEKIAAETRWRKHTWLFSATLEGELLEDFAERLLNDPIKVDAEPSRR
                     ERKKIQQWYYHADNVEHKTKLLARIISEFSVERAIVFVRRREDVRELSETLRKRGIRS
                     TYLEGEMAQTQRNQAINRLKEGVVNVLVATDVAARGIDIDDIDFVLNYDLPYSADTYL
                     HRIGRTARAGKKGSAISLVEAHDYKLLGKIKRYTEEVLKPRIIEGLEPRTKAPKDGEL
                     NVTSKKEKARIKKKKEAKKEAAKPKVKVRHKDTKNIGKRRKPSSESAAVKQA"
     gene            complement(3536..3829)
                     /locus_tag="PXC99_001071"
     CDS             complement(3536..3829)
                     /locus_tag="PXC99_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL5417534.1"
                     /translation="MSKTMQQKAAEAHNMCRLKGDSMLDNADRQIAFEAVYESEELAQ
                     QAVEFFAQKAKSVETEPCEIQSEITQIAEGFLMKMWITFSCQAEVILFQMAVR"
     gene            complement(3831..4493)
                     /locus_tag="PXC99_001072"
     CDS             complement(3831..4493)
                     /locus_tag="PXC99_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HDL5417535.1"
                     /translation="MPFPDEISELKGYFDGTNPVSAYPAQGLNVPFYILGSSPESAYL
                     AAERGLPYAFASHFAPRFMDDAIRIYRSHFKPSDVLDKPYVILGVNAIVAETDEEATQ
                     LATTQTQFFLNVVTNAQQNLQPPLESDDKVWENFVKAEIVPHFGPVAFEQNALYRQEK
                     TVVRQMTECSLIGSPQSVEQQLKALKARVEIDEIMAVNYIFDEQKQHQSYTWLKQITD
                     KV"
     gene            complement(4477..4929)
                     /locus_tag="PXC99_001073"
     CDS             complement(4477..4929)
                     /locus_tag="PXC99_001073"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MsnO8 family LLM class oxidoreductase"
                     /protein_id="HDL5417536.1"
                     /translation="MVLQVLNSKAIQPFLYANSENKMTNLSILNLVPIREGQTAKQAV
                     DSMVKLAKHAENIGIERYWIAEHHNMKNLASSATQLLIQHALSHTEKLRVGSGGVMLP
                     NHSPYIVAEQYGTLETLYPNRVELGLGRAPGTDMRTASALRPEFAFPR"
     gene            complement(4949..5587)
                     /locus_tag="PXC99_001074"
     CDS             complement(4949..5587)
                     /locus_tag="PXC99_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HDL5417537.1"
                     /translation="MKKFALKTVLVALSALFAFNATAVAADPTAGKEYIEVRKAPSAQ
                     KEVVEFFSFYCPHCYDFELNYKIPSQIKAKLPADSKLVQYHVNFLGRQSENLTRAWAL
                     AMALGAEDKVKTALFEAAQKDAFKSMDDIRAVFIANSISAEQFDSGINSFAVNGLVNK
                     QVQLAEDFQIRGVPAFFVNGQYQLNLEGFSDSSSTNDFIQRYIDAVVFLSKK"
     gene            complement(5631..5900)
                     /locus_tag="PXC99_001075"
     CDS             complement(5631..5900)
                     /locus_tag="PXC99_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihD family protein"
                     /protein_id="HDL5417538.1"
                     /translation="MKCKRLEELLELLGEHWRKNPDLHLIDILQQLSVEVSEPDNFHA
                     LRDEVLIYQLKMRNADKFEPIPGIKKDYEDDFKTALLRARGILND"
     gene            5992..7101
                     /gene="mobA"
                     /locus_tag="PXC99_001076"
     CDS             5992..7101
                     /gene="mobA"
                     /locus_tag="PXC99_001076"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HDL5417539.1"
                     /translation="MEEKISAVILAGGLARRMNGAEKGLQLLDQKPLISHLLARLSPQ
                     IEDIWLNINRSVEQYQQLYPELPYYQDSLPDFQGPLSGMLSGFEQIESDYLLFVPCDT
                     PFIPTQLLHKLHTALRINQAQIAYAHDGDRPHPTVALVHRSVAENLRAYLASGERRLL
                     WFFQTQKSVAVDFSAYKAAFRNFNCLEDLTAFNPYPIKTLAITGYSGTGKTTLLEKLI
                     PKLTACGIRVGLIKHSHHNVDIDKKGKDSYRLREAGANPTMVVCDERWALMTETKQAA
                     ETKQAVEFSQLIAKFDPETVDLVLVEGFKHETMPKIQLHRKEIEKPLPALDQWTIATA
                     TDYPLERENRLDINDVEQLADFIRQWLEASKEPAN"
     gene            complement(7156..11667)
                     /locus_tag="PXC99_001077"
     CDS             complement(7156..11667)
                     /locus_tag="PXC99_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL5417540.1"
                     /translation="MINKNFPLSYLASFVAFAVSLSATASVFRDDIDLQYYRDFAENK
                     GKFTVGASNIEIKDKSGNTLDALFPNVPMPDFSAANRNLGIATLVAPQYLVSVAHNTQ
                     YNTVEFGAPGTNADAHHYTYKVVDRNDYGIVEGGQHQDYQVPRLNKLVTEVAPATVTD
                     LGNNASAYQDSSRFTHFARLGSGRQIVKNTEHKDNQISTSYQYLTGGVHLPIAVHNSD
                     YWLDFRGNALNNSPYGALTAFGTRGDSGSGVYGYDQKTKRWLLLATYTFGTPANNYYN
                     RAGIIRQDYHDKQFAEDIAGTLTNAQQNAVFEWSAQGKDSSIGNKGKNLTVSLADRSI
                     KDNSASPLGYGGTPQLQLPQDNTGKTLNIEGQDSTIVLKTDIDQGAGALNFNANATVR
                     PENDQSWVGAGIVVAKGKQVNWQVKNPQGDRLSKLGEGTLHINGKGENLGDISVGQGT
                     VILTQQAGENGKKSAFNQVGIVSGRSTVVLNSADQVDPNKIYFGFRGGRLDLNGNNIA
                     FNRIQNSDDGARIVNNHLQKAATLTINGPKPPEATDLKWGTWKENSADIYEYINPHAN
                     NRTDYFTLKGNPNQYMPTNGASNAHWTFLSSNKDAAVKQVLAQKGLEHRYNSFNGFIG
                     ETDNTQHNGRLNVVYDPKASTPPATASEVTWGKGLVAGADIYLFTNPKTKIREYFALK
                     GDPKQPVPRGGLSSEHWEFLAADRNQAINKVLARKNAPIEQEKLNSIYTFSGGLNLNG
                     DLTVKGGKVLLSGRPTPHAYDAINKQDVVYADDWQNRQFKADNMQLNQYAQLYVGRNV
                     SNLQANLSANDHAQLHLGFINEQTPSCYYSEYTGKTSCDTQAVVSNEIFATLPTTQIN
                     GDVSLAEQSQLHIGKANLIGTIQAAATTSIRLANQASWTNTGDSRTGNLVAENGSTIN
                     LNEKFVTGEIPTRFNTLIIDGNFQGNAKINYLTDIAAGKGDHLQVNGLAEGTFTLALR
                     NSGKEAEVVSPLSLLTLTHQAQADKAKVSLENGYVDLGAYRYVLANRSNGYRLYNPLK
                     DAKDRNQSIATAKAELDHAIAEADKQKQEISRLNAEAEKERQAEKNAKQAAANAQSQL
                     SQANSELTRLQQYADYYRRYYPTYYRQIQGQITVAKQKVTQASAALTTAENNAKASAA
                     QIANVEQAVETAQNIAKQVEAKLATLRITAGNSEAILNAEALKLCQENGANCEHLQAH
                     ADTDSSNIQQSDWVSQYANTALSELSAQANSALQIGQDLDRQLFAKHDKFHVWSSIEH
                     QKTEHQSDLYRPYEQQTNLTQLGIELPLANGINAGVMLSRNHANAEFDEGVNGKSNLL
                     MASLYGKWHSENGTFVSLDGSYGKAKNRIDLFGENRFNRHIMAIGANLGHNFDLAGVQ
                     VQPAVGTRYYRFSAQNYKLGEVEVRSPKAHFMAYQAGVKVSKAFDLSSWKVEPSLAAH
                     YVDASSKRLSVAVNDNTFSQRFGRYLKTEVGVGVTKGQWQLSSHLGLLKGNEIGKQHF
                     AGFKLGYSW"
     gene            complement(11851..12855)
                     /gene="fbp"
                     /locus_tag="PXC99_001078"
     CDS             complement(11851..12855)
                     /gene="fbp"
                     /locus_tag="PXC99_001078"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HDL5417541.1"
                     /translation="MKTLGEFIIEKQAEYPGAKGELSGILSSIRLAAKIIHREINRAG
                     LSQDILGTAGSENVQGEAQMKLDVFANETMKKALLAREDVAGFASEEDDNFVAFDNER
                     GRNAKYILMTDPLDGSSNIEVNVSVGTIFSIYRRVSPIGTPVTQEDFLQEGRKQVAAG
                     YVTYGSSTMLVYTTGNGVNGFTYDPSLGLFILSHPDLKTPTEGKYYSINEGQYVTFPQ
                     GVKRFIKYCQETDEAIKRPYSSRYIGSLVSDFHRNLLKGGIYIYPTSTVYPKGKLRLL
                     YECNPIAFLAEQAGGMATDGINPILDIKPTELHQRVPFFVGSTSMVKQAGEFMQEFAK
                     "
     gene            12979..13770
                     /locus_tag="PXC99_001079"
     CDS             12979..13770
                     /locus_tag="PXC99_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HDL5417542.1"
                     /translation="MNNLRIKMISPEIALAKYNELDVLEINHSKVKAKIALQGAQLLS
                     WQPKNTQQDVLWLSEIEPFQTGVAIRGGIPICHPWFGTDKKPAHGTARIQAWNLLEHT
                     SSADGIRVVLGLENQAKLEMILGEVCELYFTHLAPEPAQAALHTYFQVGDITKTEVQG
                     LATQCFDKLTNQEIEVPSPRKISENVDCIYPAQAVNFIQDFANQRTIKVEHINATETV
                     LWNPWHNTVSAMTETAYQNMVCVETARINTLLQQNETLGVRILVR"
     gene            complement(13838..14527)
                     /locus_tag="PXC99_001080"
     CDS             complement(13838..14527)
                     /locus_tag="PXC99_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HDL5417543.1"
                     /translation="MLQLRKANERGDGSFSWLKSYHTFSFANYYDLKHIHFSHLRVIN
                     EDFIAPNHGFGKHPHDNMEILTYMLKGRVAHEDSMGNKTEVKAGEFQIMSAGTGVFHS
                     EINPDPNETLHLYQIWIIPNQKDVTPRYNQDRFAPKEGATLILSPNAEEGSFKIYQDM
                     KLWRYQYPTAKSEQLALEPNRSYWLQVVKGNLNINGVELSTSDALGIRQEKALEINTQ
                     DDVEFLLFDLV"
     gene            14720..15385
                     /locus_tag="PXC99_001081"
     CDS             14720..15385
                     /locus_tag="PXC99_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine/7-aminomethyl-7-
                     deazaguanine transporter"
                     /protein_id="HDL5417544.1"
                     /translation="MNFTTYFSDENKRRSLILLSLFHIFIIAISNYLVQISFEVQVPL
                     TEFSFPTTWGTLTFPFIFLATDLTVRVFGADLARKIIFVVMFPALVISYVISVLFFET
                     QFQGFSALTEFNFFVFRIALASFAAYLVGQLLDVLVFNSLRQGKRWWLAPTCSTIFGT
                     LIDTFVFFAIAFYKSSDEYMAEHWFTIGSVDYAFKLFVSLLLFLPLYGVILNFIMKKL
                     DLK"
     gene            15471..16274
                     /gene="map"
                     /locus_tag="PXC99_001082"
     CDS             15471..16274
                     /gene="map"
                     /locus_tag="PXC99_001082"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HDL5417545.1"
                     /translation="MNNIPLRNEEEIQKLRVACKLASDVLVMIAPYVKEGVTTGELDK
                     ICHEYILANGATSASLGYHGFPKSVCISLNEVVCHGIPSDDKKLKKGDILNIDVTVIK
                     DGYYGDNSMMYVVGEPSVRDKRLMAVTLESLYVGIRTVKAGVRLKEIGTAIQKYVEKE
                     GFSVVREYCGHGIGTEFHCDPQVVHYATDDGGVVLKEGMVFTIEPMVNAGKKEVRLMG
                     DGWTVKTKDRSHSAQYEHQIVVTKDGCEVLTIRDEEIAEGRISRIMHNS"
     gene            complement(16390..17804)
                     /locus_tag="PXC99_001083"
                     /pseudo
     CDS             complement(16390..17804)
                     /locus_tag="PXC99_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605131.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sucrose transporter subunit IIBC"
     gene            complement(18111..18761)
                     /gene="thiQ"
                     /locus_tag="PXC99_001084"
     CDS             complement(18111..18761)
                     /gene="thiQ"
                     /locus_tag="PXC99_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter ATP-binding protein"
                     /protein_id="HDL5417546.1"
                     /translation="MIELDLHFTYEQMNMHFQLSVKKGERIAVVGESGAGKSTLLNLI
                     AGFEKAESQQSQLWLNQKNHLDTEVAQRPVSMLFQDNNIFPHLTVEQNIGLALVPSLS
                     LNPKQKAQVKQIATQMGIETFLQRQADQLSGGQKQRVALARTLLRDKPILLLDEPFSA
                     LDPQRRAELQQIVFDICQSRNLTLLMVTHQLSESLFLFNRVITVADGEIVSDLSPL"
     gene            complement(18758..20332)
                     /gene="thiP"
                     /locus_tag="PXC99_001085"
     CDS             complement(18758..20332)
                     /gene="thiP"
                     /locus_tag="PXC99_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine/thiamine pyrophosphate ABC transporter
                     permease"
                     /protein_id="HDL5417547.1"
                     /translation="MLSTLTKTTAWFIYFSIIALYVFSLWALMDYHQNDTLFVFSDIT
                     ATVAYSLLQASLSAVISLFLGSLLARSFFYLDFKGKNLLYKTISFIWALPSLVIIFAV
                     IGVFGNSGWLAKLFQQLGWNWQFNLYGLHGIILAHCLFNIPFVMKYYTGGLQLTPSSR
                     FQLAAQLNLTGWNYIQIVELPIIKTLLPYMFMTVFLVCFTSFPIVLMLGGSPKYSTLE
                     VAIYQAVTFEFDFAKALILIGVQFVVGIGLQLVMNYISTSALKKLKQQPNRVEIWKPK
                     PTGLAKLGLQAVIFLQSFAIILPLVSVIWAGLSVSKLSERLLNPTLWQATQYSLYLSL
                     IASIFVITISYLIALEARQLLYTKAKLRYSILTAITLFPLLLPIFLLSVGLFILLMNS
                     ELSSEALLLLVGICNGLTLLPFIYPMLFSAMWNSLTSHDKLAQGLGLKGLRRWWIVEK
                     NQLIRPLVTVFALAMSSSLGSFTVIAFFGNADFSSLPYLLYQQLGSYRTEDAAVTALI
                     LMLFALLPFLFSKDKL"
BASE COUNT         5765 a         4095 c         4533 g         6194 t
ORIGIN      
        1 tacatttaac tcaattcttt tttatataaa actttatcag tttgaggtat ttaccgtgtc
       61 taatcaatca tcaaacgcac cgcaaagaga aacgttctcc ggacgtggtg catttattat
      121 ggcggctatt ggttccgctg tcggcttagg gaacatctgg cgtttccctt atactactta
      181 tgaaaacggc ggtggggctt ttattctgcc gtatatcatt gcccttttga ccgcaggttt
      241 accgctgctg ttcttagatt attctatcgg gcataaatat cgtggtggtg caccgctcgc
      301 tttccgccgt ttcagctcga aatttgaaac cttcggttgg tggcaagtgc tgatcaacgt
      361 gatcatcggg atttattatg cggtggtact cggctgggca gcaagttaca cctacttctc
      421 attcagcgga gcgtggggcg ataaaccggt ggatttcttt atcggtgaat tcttaaaaat
      481 gggcgatatt actcaaggcg tgagctttga atttgtcggt atggttacag ggccgttaat
      541 tgcggtatgg ctgattgcta ttgctgtgtt ggctatgggg atcaaaaaag ggatttctgc
      601 tgcctcaaac ctgctaatgc cgcagttgat cgtgatgttc ttagtgttgg tcggctattc
      661 attaacccta ccgggtgctg cgaaaggctt agatgcgtta tttaccccaa actgggaaaa
      721 attggctgat ccaagtgtgt ggattgccgc ttacggtcaa atcttcttct cactctctat
      781 ctgcttcggg attatgatta cctatgcttc atacctgaaa aaagaaaccg atttaaccgg
      841 ttcaggctta gtggtgggtt ttgcgaacag tggttttgaa ttattagcgg gtattggcgt
      901 atttgcggca ctcggcttta tggcaacggc tgcagggcaa gaagtgaacg aggtagcaaa
      961 aggcggtatc ggcttggcat tcttcgcttt cccaaccatt attaaccaag caccaatggg
     1021 ggcattagtt ggcgtgctgt tctttggttc actcaccttt gcggcattaa cctcatttat
     1081 ctcggtaatt gaagtgatta tttcagcggt gcaagacaaa ctcaattcag gtcgtgtgaa
     1141 agccacgcta ctagtcggca ttccgatgat ggtggtatct gtcttgctat tcggtacaac
     1201 caccggttta ccaatgcttg atgtgatgga taaattcgta aaccaattcg gtattgttgc
     1261 ggtggcgttt gtttccttga ttgcgattgt caccagcgag aaattaagca cccttgaaaa
     1321 acacctgaac gaagtttctt cattcaaagt cggctttatc tggcgtttat gtatcgttat
     1381 tacctccggc gtactggcat ttatgttatt cagcgaaatc gccaaagtgt atcgtgaagg
     1441 ttatgaaggc tacccaagct ggtttgtaaa caccttcggc tggggaatgg caatcggctt
     1501 agtggtggtg gcttatttgc tatcaaaaat ggcgtggaaa aatgaaccaa aaggagatga
     1561 gtaatgagtt cagcagcaat tattaccatg gtggtggcaa tgacgattat ctggggcggt
     1621 ttactttttg cgattaaacg tctgccgaaa gaagaacaat aatttgcaaa tttttgtata
     1681 aaaaagcccg cttgttagcg ggcttttggc tatacggtaa tcccaaattt ctcttccaca
     1741 aaggcttgga aatcggtgca accgccaacg tggttattat ccacaaaaat ttgtggtaca
     1801 gttgcaaccg gcttgccaac acgaggctct aggtcttgtt ttgaaatatt ttcagcgatc
     1861 atatcaataa atttaaaatc aaaatcgctt aattcttgtt tcattttctc ggctaatgtt
     1921 tttgcacgca cgcagtatgg gcaagataaa cgtccataaa tttcaacaaa catataatgt
     1981 tccttctata aagtaaaagt gagcgaattg tccgttaaac ggctctgtgt aagtgtaaca
     2041 attttttcaa ccttttagga taaatttctt caccatcacg gcaagcagtt aatgtgatat
     2101 actggggcaa atttacaagt agagaaacag agatgaccca attaatgacg tttgaggagc
     2161 ttgatttaag ccctcaatta cttaaagcct tagcacacaa aggctataac cgcccaaccg
     2221 ctattcaaca agccacgatt ccggctgcgt tagaaggacg tgatctgctc ggttcagccc
     2281 ctaccggtac cggcaaaacc gccgcttttt tactgccggc aattcagcat ttattagatt
     2341 atcctcgccg caaaccaggg gctcctcgca ttttaattct taccccaacc cgagagctgg
     2401 caatgcaggt ggcggagcaa gcccaagcac tggctaaatt tactcagttg agcattgcga
     2461 ctattaccgg tggggtggcg tatcaaaatc acggtgaagt ctttaataaa aatcaagata
     2521 ttgtggttgc taccccgggt cgtttaatgc aatacattaa agaggaaaat tttgactgcc
     2581 gagcggtgga agtgctgatt tttgatgaag cagatagaat gttgcaaatg ggcttcgggc
     2641 aagatgcgga gaaaattgcg gcagaaaccc gttggcgtaa gcatacttgg ttgttttcag
     2701 cgaccctcga gggcgagtta ttagaggatt ttgccgagcg attattaaat gatccgatta
     2761 aagtcgatgc cgaaccaagt cgccgtgagc gtaaaaaaat tcagcaatgg tattaccacg
     2821 ccgataatgt agagcataaa accaaattat tagctcgtat tatcagcgaa ttttcggtgg
     2881 aaagagcgat tgtgtttgtc cgccgccgag aagatgtgcg agaactcagc gaaaccttgc
     2941 gtaagcgggg aattcgttct acttatctcg aaggtgaaat ggctcagacc caacgtaacc
     3001 aagctattaa ccgtttaaaa gaaggcgtag tgaatgtgtt agtggcaacc gatgtggcgg
     3061 ctcgaggcat tgatatagac gatattgatt tcgtgctgaa ctacgattta ccttatagtg
     3121 cggatactta cttgcaccgt attgggcgta ccgctcgtgc tggcaaaaaa ggttcggcaa
     3181 tttcattggt ggaagctcac gattataaat tactcggcaa aattaaacgt tacaccgaag
     3241 aagtactaaa acctcgcatt atcgagggct tagagcctcg caccaaagcc ccgaaagatg
     3301 gcgagctaaa tgtgaccagc aagaaagaaa aagcacgcat taagaagaaa aaagaggcga
     3361 aaaaagaagc ggcaaaacca aaagtaaaag tccgccacaa agataccaaa aatatcggta
     3421 aacggcgtaa accaagtagt gaatcggctg cggttaaaca ggcataatga tacaagcggt
     3481 tattttctga agattttttg caaaaatttc atcaaaaata accgcttgtt tatatctacc
     3541 ttactgccat ttggaacaga atcacttctg cttggcagct gaaagtgatc cacattttca
     3601 tcagaaaccc ttctgcaatt tgtgtaattt cgctttgaat ttcacaaggt tcggtttcga
     3661 ccgattttgc tttttgtgcg aaaaattcga ccgcttgttg agccagttct tcgctctcat
     3721 acaccgcttc aaaggcaatt tggcggtctg cattatccaa catagaatcg ccttttagcc
     3781 ggcacatatt atgtgcctca gccgcttttt gttgcatcgt tttgctcata ttacacctta
     3841 tccgtaattt gttttaacca agtgtaggat tgatgctgtt tttgctcatc gaaaatgtag
     3901 tttaccgcca taatttcatc aatttccact cgtgctttta gggctttaag ttgttgttca
     3961 acgctttgcg ggctaccaat taaggagcat tcggtcattt ggcggacaac ggttttctct
     4021 tgtcggtata gagcattttg ctcaaaggca accggcccga aatgcggcac aatttctgct
     4081 ttcacaaaat tttcccacac tttgtcgtca gattcgagcg gtggttgcag attttgttgg
     4141 gcattggtca ctacatttaa gaaaaactgg gtttgggtgg tcgccagttg tgttgcttct
     4201 tcatcggttt ctgccacaat ggcattcaca cctaaaatca cataaggttt atctaacaca
     4261 tcagagggct taaaatgtga gcggtaaatg cggattgcat cgtccataaa gcgaggggca
     4321 aagtgtgaag cgaaggcgta aggcaagcct cgttcagccg ctaaataggc actttcaggg
     4381 cttgagccta gaatataaaa cggcacattt agcccttgtg ccggataggc ggaaacaggg
     4441 tttgtaccgt caaagtagcc ttttaattcg ctgatttcat cggggaaagg caaactctgg
     4501 gcgtaaggca gaggcggttc gcatatcggt gccgggggct cgcccaagcc ccagttctac
     4561 tcggtttggg tagagtgttt caagcgtgcc gtattgttct gccacaatat aagggctgtg
     4621 gttgggtaac atcacgccac cggagccgac tcttaatttt tcggtgtggg agagggcgtg
     4681 ttgaatcaat aattgcgtgg cggaactggc aagatttttc atattatggt gttcggcaat
     4741 ccaatagcgt tcaatgccga tattttctgc gtgttttgct aatttcacca tagaatcgac
     4801 cgcttgtttg gcagtttgcc cttcacgaat cggcacaagg ttgagaatgg ataagtttgt
     4861 cattttgttc tccgagtttg catataaaaa aggctgaata gctttactat tcagcacttg
     4921 taaaaccatc tccttaatat ggggacgatt atttcttact caagaagacc acagcgtcaa
     4981 tatagcgttg gataaaatca ttggtcgagc ttgaatcgga aaatccttct aggttaagct
     5041 ggtattgacc attcacgaaa aacgccggta caccacgaat ttggaagtct tcagctaatt
     5101 gaacttgttt attgactaaa ccgtttactg caaagctgtt gataccgctg tcaaactgtt
     5161 ctgcactaat gctgttagcg atgaagaccg cacgaatatc gtccattgat ttaaacgcat
     5221 ctttttgagc ggcttcaaac aaggcggttt ttactttatc ttccgctcct aatgccattg
     5281 ccaatgccca agcacgggtt aagttttcag attggcgacc taagaaattg acgtgatatt
     5341 gcactaattt gctgtctgca ggcaatttcg ctttgatttg gcttggaatt ttgtaattta
     5401 gctcaaaatc gtaacagtgg gggcagtaga atgagaaaaa ttccaccact tctttttgag
     5461 ccgatggggc tttacgcacc tcaatatact ctttgccggc agttggatct gctgcaactg
     5521 cggttgcgtt aaatgcaaaa agggcagaaa gagcaaccag tacggttttt aatgcaaatt
     5581 ttttcataat gattccttca aaaatatgat aagtgagaaa taagacaaac ttaatcgttt
     5641 aaaattccac gagctcggag caatgcggtt ttaaaatcat cttcataatc ttttttaatg
     5701 cccggaatcg gctcaaattt atcggcgttt cgcattttga gctgataaat caaaacctcg
     5761 tcacgcaggg catgaaaatt atccggctcg cttacttcca ccgaaagctg ttgcagaata
     5821 tcaattaagt gaagatcggg gtttttccgc caatgttcgc caagcagttc caatagctct
     5881 tctaaacgtt tgcatttcat agtatgcctc ttaaaaaact tgttgaatag taagcggaat
     5941 aatatacttt tagccctcat ttggcaaaaa aattcaggtt tggagaggga aatggaagag
     6001 aaaatttcag cggtaatttt agccggaggt ttggctcggc gaatgaatgg agcggaaaaa
     6061 gggttgcaac tgttagatca aaaaccgttg atttcgcacc tgttagcccg actttcgcca
     6121 caaatcgagg atatttggct caatatcaat cgttcggtgg aacaatatca acaactttac
     6181 cctgaattac cttattacca agacagcttg cccgattttc aaggcccact aagtggaatg
     6241 ctttccgggt tcgagcagat tgagagcgac tatttactgt ttgtgccttg tgacacgccg
     6301 tttattccaa cccaactatt gcacaagtta cacacggcat tacgcattaa tcaggctcaa
     6361 attgcctatg ctcacgatgg cgaccgccca cacccaacgg ttgccttggt gcatcgttcg
     6421 gtggcggaaa atttaagagc gtatttagcc tccggcgaac gccgattatt gtggtttttt
     6481 caaacccaaa aaagtgtggc agtggatttc tcggcatata aagccgcatt tcgcaatttt
     6541 aattgtttag aagatttaac ggctttcaat ccatatccca tcaaaaccct ggcgattact
     6601 ggctatagcg gcacaggcaa aaccacctta ttggaaaaat taatcccaaa attgaccgct
     6661 tgcggtattc gggttggctt gattaagcat tcccaccaca atgttgatat tgataaaaaa
     6721 ggaaaagaca gctatcgctt gcgagaagca ggagcaaacc cgactatggt cgtgtgtgat
     6781 gaacgttggg cattaatgac ggaaactaag caggcagcag aaactaaaca agcggtcgaa
     6841 ttttcacaat taattgcaaa atttgaccca gagacggtag atttagtttt agtggaaggc
     6901 tttaagcacg aaacaatgcc gaaaattcaa ctacaccgta aagaaattga aaaaccgttg
     6961 ccggcgttag accagtggac aatcgcgacc gcaaccgatt atccgcttga gcgggaaaat
     7021 cggttggata ttaatgatgt tgaacagctt gctgatttta ttcggcagtg gctagaggca
     7081 agcaaagagc cggctaatta attgactaaa aagcccctaa agtaagcgat tgcttagttt
     7141 aggggctaat agcaattacc agctatatcc cagtttgaag ccggcaaaat gttgtttgcc
     7201 gatttcgtta cctttcaata gaccaaggtg agagcttaat tgccattgac cttttgtaac
     7261 acccacgccc acttcagttt tcagataacg tccgaaacgt tggctaaagg tattgtcatt
     7321 gactgccaca ctcaagcgtt tgctgctggc atcgacataa tgtgcggcaa ggctaggctc
     7381 aactttccag ctggagaggt caaaggcctt gctgactttc acacctgctt ggtaggccat
     7441 aaagtgtgct ttcgggctgc ggacttctac ttcacccagt ttgtaatttt gtgcgctgaa
     7501 gcgatagtaa cgtgtaccaa cagcaggctg aacttgtacg ccggctaagt cgaagttatg
     7561 tccaagattt gccccaatcg ccataatatg acggttaaag cggttctccc cgaacaggtc
     7621 gatacggttt ttcgctttac cgtagctacc gtctaggctg acgaaagtgc cgttttccga
     7681 atgccattta ccatataggc ttgccatcag taagttggat ttaccgttca ctccctcatc
     7741 aaattccgca ttagcgtggt tgcgggatag catcacaccg gcattgatac cgtttgcaag
     7801 cggtaattct atgcctaact gagtgaggtt ggtttgttgc tcatacgggc gatataaatc
     7861 cgattggtgt tcggtttttt gatgttcgat actgctccaa acgtggaatt tatcgtgttt
     7921 tgcgaacagt tggcgatcta agtcttgccc gatttgcaac gcagaatttg cctgtgccga
     7981 tagctcggaa agagcggtat tggcatattg gcttacccag tcgctttgtt gaatattact
     8041 actgtcagtg tctgcgtgtg cttgtagatg ctcacaattt gcaccattct cttggcaaag
     8101 ttttagtgcc tcagcgttta aaattgcttc actatttcca gcagttatac gtaaggtagc
     8161 taattttgct tctacttgtt ttgcaatatt ttgtgcagtt tcaaccgctt gttctacgtt
     8221 agcaatttgc gcagcggatg ctttagcatt gttttctgct gtagtgagtg cagcactcgc
     8281 ttgtgtgact ttctgttttg ctaccgtaat ttgcccttgg atttggcggt aatacgttgg
     8341 atagtaacgg cggtagtaat cagcatattg ttgcaaacgg gttaattcgc tatttgcttg
     8401 gctaagctga gattgtgcgt ttgcagcggc ttgtttagca tttttctctg cttggcgctc
     8461 tttctcggct tctgcgttca aacggctgat ttcctgtttt tgtttatccg cttctgcaat
     8521 agcatggtct aattccgctt tcgccgttgc aatcgactga ttccgatctt tagcatcttt
     8581 taacggattg tataagcgat agccgttgct tcgatttgcc agcacataac gatatgcacc
     8641 taaatcaaca taaccgtttt ccagtgaaac tttagcttta tcagcctgag cctgatgggt
     8701 taaggttaat aaacttaacg ggctaaccac ttcagcttct ttgccactgt tgcgtaatgc
     8761 aagagtgaaa gtcccctcgg cgagaccatt tacttgtagg tgatcgcctt tgccagcagc
     8821 aatatcggtt aagtagttga ttttggcatt accttggaaa ttaccgtcaa taatcaacgt
     8881 attaaaacga gtcggtatct cgcctgttac aaatttttca ttcaggttga tggttgaacc
     8941 gttttctgcc actaaattgc cagtacggct atccccagtg tttgtccagc ttgcttggtt
     9001 agctaaacga atgctcgttg ttgctgctgc ttgaatggtg ccaatcaggt tcgctttgcc
     9061 gatgtgtaat tggctctgtt ctgccaagct gacatcacca ttaatttgtg ttgtgggcag
     9121 tgttgcaaaa atttcattag aaacgaccgc ttgtgtatca cagcttgttt taccagtgta
     9181 ctcagaatag tagcaacttg gagtttgctc gttgataaag cctaaatgta gctgagcatg
     9241 gtcattcgct gacaagtttg cttgcaggtt tgagacatta cgaccaacat aaagctgagc
     9301 gtattggttt agctgcatat tatcagcctt aaattgacga ttttgccaat catcggcata
     9361 aactacatct tgcttattga tcgcatcata agcgtgaggg gtcggtctgc cggaaagtag
     9421 cactttacct cctttcacag ttagatcgcc gtttaagttc aaaccaccag agaaggtata
     9481 aatactattg agcttttctt gctctattgg tgcgttttta cgggctaata ctttgttgat
     9541 cgcttgattg cgatctgcag ctaaaaattc ccaatgctcg ctgcttaagc caccgcgagg
     9601 aacaggttgt tttggatcac cttttaatgc aaagtattcc cgaattttcg ttttcggatt
     9661 ggtgaacaga taaatatctg caccagctac tagcccctta ccccaagtta cttcagaggc
     9721 agttgccggt ggtgtagagg cttttggatc atacaccaca ttcaaacgac cgttatgctg
     9781 ggtgttatct gtttcgccaa taaaaccatt aaagctattg tagcgatgct ccagaccttt
     9841 ttgcgcgagt acttgtttta ctgctgcatc cttgttagaa gacaggaagg tccaatgggc
     9901 attacttgcg ccattcgttg gcatatattg gtttggattg cctttgagcg taaagtaatc
     9961 ggtacggtta ttagcatgtg ggttgatata ttcataaata tcagcactgt tttctttcca
    10021 cgttccccat tttaagtccg ttgcttcagg gggcttcggg ccattaatgg tgagtgttgc
    10081 agctttttgt aggtgattat taacaatacg cgcaccatca tcactatttt gaatacgatt
    10141 aaacgcaatg ttgttgccgt tgagatctaa acgaccacca cggaagccaa agtaaatctt
    10201 atttggatcg acttgatcag cactgtttaa tacaacggtt gaacggccgc tcacaatacc
    10261 aacttggtta aatgcagatt ttttgccatt ttcacccgct tgttgggtca aaatgacagt
    10321 gccttgtcca acactaatgt caccaaggtt ttcgccttta ccgttaatat gtagtgtccc
    10381 ttcgcccaat ttagataaac ggtcaccttg tgggtttttg acttgccaat taacttgttt
    10441 accttttgcc actacaattc cagctcctac ccagctttga tcattttcag ggcgaactgt
    10501 tgcattagca ttgaaattta atgcgccagc accttggtca atatcggttt ttaatacgat
    10561 agtgctatct tgtccttcaa tgtttagggt ttttccggtg ttatcttgcg gaagttgtag
    10621 ctgaggtgtg ccaccatagc ctaatggaga agcgctattg tctttaattg aacgatcagc
    10681 aagcgaaacc gttaagtttt tccctttatt accaatgcta ctgtctttac cctgtgcaga
    10741 ccattcaaaa acggcatttt gttgcgcatt ggttaatgtg ccggcaatat cttcggcaaa
    10801 ttgtttatcg tgataatcct gacggataat accggcacgg ttgtagtagt tgtttgcagg
    10861 cgtaccaaag gtgtaagtag ccagtagtag ccagcgtttc gttttctgat cgtagccata
    10921 cacacctgaa ccgctatcac cacgagtacc aaatgcagtt aatgctccat atgggctatt
    10981 gtttaatgca tttcctctaa aatctagcca gtaatcggaa ttatgtaccg cgattggtaa
    11041 atgaactccc ccggttaaat attggtaaga tgttgaaatt tggttgtctt tatgctcggt
    11101 atttttgact atttgacgac cagagcctaa gcgagcaaag tgagtaaaac gactactatc
    11161 ttggtaggct gaagcattat tacccagatc agtcactgtt gcaggtgcga cctcagtgac
    11221 taatttattg agacgtggca cttgataatc ttgatgttgc ccaccttcaa caattccata
    11281 gtcgttacga tcaacgactt tgtaagtgta gtggtgtgca tcggcattag tgcctggggc
    11341 gccaaattcc acagtattgt attgtgtatt atgggcaacg ctgactaaat attgcggtgc
    11401 aactagagtt gctatcccta agttacggtt tgcagcacta aaatctggca tcggtacatt
    11461 tgggaagagt gcatctaatg tattgccact tttatcttta atttcaatat tgcttgcacc
    11521 tacggtgaat ttacccttat tctccgcaaa atcacggtag tattgaagat cgatatcatc
    11581 tctgaaaaca gaggctgttg cagataaact aacagcaaat gccacaaagc tggcaaggta
    11641 agaaagtgga aagtttttat ttatcataaa atgttaataa attgctaata ttaatggagt
    11701 aaaaaggtgg ggtattctat agataattat ttatttggca agaggtctta cctgtttttt
    11761 atacaaattt acaatcttaa gataggcaaa agcagctacg gaatacgcag ctgctttgtt
    11821 gaaagtttta ttgagtgata agcaggagca ttattttgca aattcttgca taaattcgcc
    11881 cgcttgtttg accattgagg ttgaaccgac aaagaacggt acacgctggt gtagctctgt
    11941 tggcttaata tctaaaatcg gattaatacc atctgtcgcc attcctccgg cttgttcggc
    12001 aagaaacgca atcgggttgc attcatagag taaacgcaat ttcccttttg gatatacggt
    12061 ggaggttggg taaatataaa taccgccttt taataaattg cggtggaaat cggacaccag
    12121 cgagccgata tagcgtgaag agtatggacg tttgatggct tcatcggttt cttggcaata
    12181 cttaataaag cgtttcacac cttgtgggaa agtaacatac tgcccttcat tgatggagta
    12241 atattttcct tcggtagggg tttttagatc agggtgtgaa agaataaata agcctaatga
    12301 cggatcatag gtaaaaccgt tcacgccatt gcctgtggtg taaaccagca tggttgaaga
    12361 accataagta acataaccgg cggcaacttg tttacgccct tcctgcaaga aatcttcttg
    12421 tgttactggg gtgccgatag gggagacacg gcggtaaata gagaagattg ttcccacaga
    12481 aacattcact tcaatattgg aggagccatc aagcggatcg gtcattaaaa tatattttgc
    12541 atttctccca cgctcattat caaaggcaac aaaattatca tcttcttccg atgcaaagcc
    12601 ggcaacatct tcacgtgcaa gtaacgcttt tttcatcgtt tcgttggcga atacatcaag
    12661 tttcatttgg gcttcaccct gtacattttc agaacctgca gtacctaaaa tatcttgact
    12721 taaaccggca cggttgattt ctcgatgaat aattttagcg gctaaacgaa tagaagataa
    12781 aatcccactt aattcccctt ttgcccctgg gtattctgct tgtttttcaa taataaattc
    12841 gccgagtgtt ttcatttttt tctccttcgc tatgttagaa tgcccttatt ataacgatta
    12901 cctttaaaga ggtagcggtt taagctttaa ttctgtgatc cacttcacat tttatctttc
    12961 aagatgagga gcaatacgat gaataatcta cgaatcaaaa tgatcagccc tgaaatagca
    13021 ttagcaaaat ataatgaatt ggatgtttta gagattaatc actccaaagt gaaggctaaa
    13081 attgcattgc aaggtgcgca gttactgagt tggcaaccta aaaatactca gcaagatgta
    13141 ttatggttaa gtgaaattga acctttccaa acaggtgtgg cgattcgtgg cggcattccg
    13201 atttgccacc cttggtttgg tacagacaaa aagcctgctc acggcacagc ccgtattcaa
    13261 gcgtggaatt tgctggaaca tacttcctca gcagatggga ttcgtgttgt tttggggtta
    13321 gaaaatcagg caaaactcga gatgatacta ggcgaagtct gtgagttgta ttttactcac
    13381 ttagcaccgg agccggcaca ggctgcattg catacttatt ttcaggtcgg tgatattacg
    13441 aaaacggaag tacaaggctt agcaacacaa tgttttgata aattgacaaa tcaagaaatt
    13501 gaagtgccat cacctcgcaa gataagtgaa aatgtggatt gtatttatcc ggcacaagcg
    13561 gtgaatttta ttcaagattt tgcaaatcag cgcaccatta aagttgagca tattaatgct
    13621 accgaaaccg tactttggaa tccttggcat aataccgtta gtgcgatgac agaaacggcg
    13681 tatcaaaata tggtatgtgt ggaaacagca cggataaata ccttacttca acaaaatgaa
    13741 acgctaggag tgagaatttt ggtgcgataa tgtttaatga gagcaagcag ctgaattagt
    13801 aatatttttt acaaatttaa ccgcttgtct cttgtattta cactagatca aacagtaaaa
    13861 attccacgtc atcttgagtg tttatttcaa gtgctttctc ttgacgaatg cctaaggcat
    13921 cgctggtgga aagttcaacg ccattgatgt ttagattccc tttcaccact tgtagccagt
    13981 aactgcggtt tggctctaat gccagttgct ctgatttggc tgttgggtat tgataacgcc
    14041 acagcttcat atcttggtaa attttaaatg aaccttcttc tgcgtttggc gaaagaatca
    14101 aggttgctcc ctctttcggg gcaaatctat cttggttgta gcgaggggtc acatcttttt
    14161 ggtttgggat aatccaaatc tggtaaaggt gtaaggtttc attcggatct ggattaattt
    14221 ctgaatggaa aaccccggtt ccggcagaca taatttgaaa ttcgccagct tttacttcgg
    14281 ttttattacc catactgtct tcgtgagcca cacgtccttt taacatataa gttaaaattt
    14341 ccatattatc gtgcgggtgc ttgccaaaac cgtgattagg tgcaatgaaa tcttcgttaa
    14401 ttacccgtaa atgtgaaaaa tggatatgtt ttaggtcgta ataattggca aaggaaaaag
    14461 tgtggtagct tttaagccag ctaaaagaac catcgcctcg ttcattggct tttctcagtt
    14521 gtaacattat ctattcctta tgtaagtgtt aagttgtgcc attttacttt atgtcaaaaa
    14581 tagataaacc ctaatttaat agattaattg tttcattttt tgaaataata tgagcttgat
    14641 ttttatggga aaatgtatag aataatgccc ccttgagttc ccttacctca agttttcatt
    14701 taacgaaaaa ggatacaata tgaactttac tacttatttt tcggatgaga acaaacgtcg
    14761 ttctctaatt ttactttcac ttttccatat ttttatcatc gcaattagca actatttagt
    14821 gcaaattagc tttgaagttc aagtaccact aacagaattt agctttccga caacttgggg
    14881 aacgttaaca ttcccattta ttttcttagc gaccgattta accgtgcgtg tatttggtgc
    14941 agatcttgct agaaaaatta tttttgttgt gatgtttccg gcacttgtca taagctatgt
    15001 gatttccgtt ttattctttg aaacccaatt tcaaggcttt agtgcattaa ctgagttcaa
    15061 cttttttgtt ttccgtattg cactggctag ctttgcagct tatttagttg ggcaattatt
    15121 agacgttcta gtatttaata gtttaagaca aggtaagcgt tggtggcttg ctccaacctg
    15181 ttcaaccatt tttggtactt taatcgatac ttttgtattc tttgctatcg ccttttataa
    15241 aagtagcgat gaatatatgg cagagcattg gtttactatt ggttcggtcg attatgcgtt
    15301 taaactcttt gtgagcctac tgctatttct accgctttat ggtgtgatat taaatttcat
    15361 tatgaagaaa cttgatttaa agtagaaatc taaactgagg tttggggatt gtgctgaaaa
    15421 aaggtataat ccccttactt tttatggcag atatagcaga gagcaatgta atgaataata
    15481 ttccattaag aaacgaagaa gaaattcaaa aactacgagt agcctgtaaa ctggcttcag
    15541 atgttttagt aatgatcgcc ccttatgtga aagagggcgt aacaactggt gaattagata
    15601 aaatttgtca cgaatacatt ttggcaaatg gggcaacttc agccagtttg ggctatcacg
    15661 gcttcccaaa atcggtgtgc atttcgttaa atgaggtcgt ttgtcacggt attccaagtg
    15721 atgacaaaaa gctgaaaaaa ggcgatattt taaacatcga tgtgacggtt atcaaagatg
    15781 gctactatgg cgataactcg atgatgtatg tagtcggtga gccaagtgtg cgggataaac
    15841 gcttaatggc ggttacgcta gagtcccttt atgtcgggat tcgcaccgtg aaagcggggg
    15901 tgcgtttaaa agaaattggt acagcgattc aaaaatatgt ggaaaaagaa ggcttttcgg
    15961 tagtacgaga atattgcgga cacggtattg gtactgaatt ccattgcgac ccacaagtag
    16021 tgcattatgc taccgatgat ggcggtgtag tgttaaaaga aggaatggtg tttacgattg
    16081 agccaatggt gaatgccggc aaaaaagaag tccgcttaat gggtgacggt tggacagtga
    16141 aaaccaaaga ccgcagccac tccgcacaat atgagcatca aattgtagtt accaaagacg
    16201 gctgtgaagt gctgacaatt cgtgatgaag agattgccga agggcgtatt tctcgaatta
    16261 tgcacaacag ctaatttgca aatttttagc gaaaaatgac cgcttgcgaa actcattgtt
    16321 aagctaaggc gtttaaaaac aaaagggatt aagctaacac ttaatccctt ttttgtgatc
    16381 tatttttgat tatttcgctt gtgctttttt cacccaaatg gctgaaatgg taaatgcaac
    16441 tacaaatgaa attaccatac cgacagaata cattgcaagg ctgtcaggtt taatcgacgg
    16501 aatacctaag aaaccggctg cacctaaggc aattgctttc acattaaaga aagcgataaa
    16561 tgcactggct aaacctgaac cgatcatcgc cgcaataaag gcttggcggt agcgtaaatt
    16621 tactccgaac attgccggtt gatacctaac agggctgaaa tacctgacgg cacggctaaa
    16681 ccacgcactt tggcatcttt cattgcaaaa gctacaccta aacaggctgc accttgtgca
    16741 atgttagaca ttgctgcaat cgggaagata aatgtaccgc cggtttgtgc tacttcagct
    16801 aataattggg tttcaaccgc aataaaggtt tggtgcatac cggtaatcac gattggagcg
    16861 tagaatgtac cgaaaattgc tccaccgata aagcctaagc tgtcatataa ccacgttaag
    16921 cctgctgaaa tcgctgaacc tgcttcacga cccaatggtc cgattacagt gaaagctaaa
    16981 ataccggcga taaataatga catcattggc gtcaccaagt tatctaaata gcttggcaca
    17041 aatttacgga aagttttctc aagggttgct aacacccaag ccgaaacgat agttggaata
    17101 accgtgcctt gataacccac tttttcaatt tctaagccga aaatattcca gtatttgatg
    17161 ttaccttcca ttaaggtttt ggcatagttc caaccgtctg caagtgccgg gtgaaccaat
    17221 aacataccaa gtgccgcacc taagaatgga ttaccgccaa atttgcgtgt agctgagaaa
    17281 ccgagtaata caggtaagaa tacaaatggt gcgttagcaa tagtgttgat gaaatcaact
    17341 aaatcggaaa tattcggata acggctaaca acagattcac cttcccagaa gaaaccgact
    17401 gccgttagca ttgagtgaat acccattaac aaaccgccag ccacaatagc cggaatgatc
    17461 ggcacgaaaa tatcggctaa gccttttacc aaacgttgta gtaatggctg atttgctgca
    17521 ccggcagccg ctacttcaga ggtggacata tctgccatac ccatttgttt ttgcatttgg
    17581 gcatacactt catttaccgt gcctgatcca aaaataattt ggtattgacc gggagtagag
    17641 aattgacctt tcacgccttc aatattttca atcgcctctt tatcaatttt ggattcatca
    17701 gcaatggtta agcgtaaacg ggttgcacag tgggcaagtg tggtaatgtt ttctttgcca
    17761 cctaattttg caatcgtttg ttctgcaatt tttggatagt tcatttgaat ttacctttca
    17821 taaaaaataa tcggttgcat tttaactaaa tcggtttagc taaaaaagag aagatttaaa
    17881 atatttccaa atttgtgaag tagatcacat tttggggaag agaatagcgg aatagggagg
    17941 taatattagt tacagttccc ctctttgcta aagtaggggg cgagttctga aaaaaatgaa
    18001 taacgctagt atccgtgcgg aacatcattc accgttagat tgttggaatt gacatcgttg
    18061 cgtacgccag cgtggcgtcc ctacatttag aacctagcag atctgctttg ctaaagaggg
    18121 gagagatcag aaacaatctc cccatctgct accgttatca cccgattaaa tagaaatagg
    18181 ctttcggata gttggtgagt taccattaac agggttagat ttctgctttg gcaaatgtca
    18241 aacacgattt gctgtaattc ggctcggcgt tgcgggtcga gggcggagaa gggttcgtcc
    18301 aataataaaa tcggcttatc ccgcaacaaa gtacgagcta atgccactcg ctgtttttgt
    18361 ccgcccgata gctgatcggc ttgacgctga aggaaggttt caatccccat ttgtgtggca
    18421 atttgtttaa cctgtgcttt ttgtttcgga ttgagcgaca aacttggtac taaagctaag
    18481 ccgatgtttt gttctaccgt taagtgcggg aaaatattgt tatcttggaa tagcattgaa
    18541 acaggacgtt gtgcaacttc ggtatcaaga tgatttttct gatttagcca cagctggctt
    18601 tgctgacttt ctgccttttc aaaaccggca attagattaa gtaatgtgct tttgcctgcg
    18661 ccactttcgc caaccactgc aatacgttcg ccttttttga cagaaagctg aaagtgcata
    18721 ttcatttgtt cgtaagtgaa atggagatcc agttcgatca tagtttatcc ttgctgaata
    18781 agaatggtag taacgcaaat aacatcagaa tgagtgcggt aacggcagca tcttcggttc
    18841 tatagctacc aagttgttgg tagagtaaat aagggagtga gctgaaatca gcgttgccga
    18901 aaaaagcaat gacggtgaaa ctgcctaagc tcgatgacat tgctaacgca aatacggtaa
    18961 caagcggtcg aattagttga tttttttcca caatccacca acggcgaagc ccctttagcc
    19021 caagtccttg tgctaatttg tcgtgcgagg tgaggctatt ccacattgcg gagaaaagca
    19081 ttgggtaaat aaatggcagt aatgttaagc cgttgcatat cccgaccagt agcagtaatg
    19141 cctcgcttga gagttcacta ttcattaata aaataaacaa accaaccgat aataaaaaga
    19201 tcggcagaag taaggggaat agggtgattg cggtgagaat gctatatctg agcttggctt
    19261 ttgtatagag taattggcga gcttcaagtg caatcaaata gctgattgtg attacgaata
    19321 tagaagcaat taaacttaag tataaagaat actgagtagc ttgccataaa gtagggttga
    19381 gcaaacgctc actgagtttt gacacgctta gtcctgccca aatgacgctg acaagcggta
    19441 gaattattgc aaaactttgc aaaaaaataa ccgcttgtaa gccgagttta gccagtccgg
    19501 taggctttgg tttccaaatt tctactcggt taggttgctg ttttagcttt ttgagtgcag
    19561 aagtcgagat ataattcatt actaattgta agccaatgcc cactacaaat tgtaccccaa
    19621 ttaagatgag ggcttttgca aaatcaaatt caaaagtgac cgcttgataa atggcaactt
    19681 caagcgtgct gtattttggg ctaccgccta acattaatac gattggaaaa ctggtaaagc
    19741 agaccagaaa aacagtcata aacatataag gcagcaaagt tttgattatc ggtagttcca
    19801 caatttggat ataattccaa cctgttaggt ttaattgagc cgcaagctga aagcgactgc
    19861 ttggagtcaa ttgaagccct ccggtataat atttcatcac aaacggaatg ttaaacaggc
    19921 agtgagccaa aatgatgccg tgcaagccgt ataaattaaa ttgccaattc caaccgagtt
    19981 gttggaaaag tttggctagc cagcctgagt taccaaatac gccaattacc gcaaaaataa
    20041 ttactagtga gggtaatgcc cagataaacg aaatggtttt atagagtaaa ttttttcctt
    20101 taaagtccaa ataaaagaaa gatcttgcca gtaggctgcc taaaaatagt gaaattaccg
    20161 cagagaggct ggcttgaagt aggctataag cgaccgtggc cgttatatcg gaaaaaacaa
    20221 ataaggtatc attttggtga tagtccatta acgcccatag actaaaaaca tagagagcaa
    20281 taatactaaa gtagataaac catgcggttg ttttggttaa tgtgctaagc atattgctcc
    20341 aaatttagaa tataagtgaa agaagtggta gcgaaattat tgtaacattt ccgcttaagt
    20401 gtgtgctaga atcttgatat tcgacaaatg atttttaagt tagcttaaaa aacaccctat
    20461 ttagcagggt gatacgacga gtttttgcgc tttttagcgt gtttttaatt tgaatttgta
    20521 gtaaagttgc gtgcgcaaaa taaatggatt aaaacaaatt tttttaactt tcaaatttaa
    20581 gaggaag
//
LOCUS       DANLVT010000035        20154 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.035, whole genome shotgun sequence.
ACCESSION   DANLVT010000035 DANLVT010000000
VERSION     DANLVT010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20154)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20154)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20154
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.035"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..509
                     /locus_tag="PXC99_001086"
     CDS             <1..509
                     /locus_tag="PXC99_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2572 family protein"
                     /protein_id="HDL5417548.1"
                     /translation="KTQICQKFQKEQISQADLSDKQFRFLQYQFACQFHSLFKDKKPT
                     KEKYIHFTHLADYLDLSNVPNQEIYTIHSLAELPSSSEREPKIVLAKNAINENLPQEF
                     YGIVITDYLFDITGKKMYGTLYSSYDNAREERNLTFKKEVLAELEARYSAWRYLPYSE
                     HLMGAVDD"
     gene            502..795
                     /locus_tag="PXC99_001087"
     CDS             502..795
                     /locus_tag="PXC99_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5374 domain-containing protein"
                     /protein_id="HDL5417549.1"
                     /translation="MIKYKAETALSLLVAITLFAIVVLSFSQWQSAQNHRLNQHFQQQ
                     QAVMILENQLALKLAGLDCESSITQNQIRYQIQCSGNRLTIRFPLGKIELNND"
     gene            844..4134
                     /gene="recC"
                     /locus_tag="PXC99_001088"
     CDS             844..4134
                     /gene="recC"
                     /locus_tag="PXC99_001088"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HDL5417550.1"
                     /translation="MFTLYQSNQISSLAEMLVKIQQVNPLEDPFEPETILIQSQGMAQ
                     WLQMQIAELNGVMGNCDFLYPTTFLWQQYRLLFPELPKENIFERSSLVWRIMRLLPSC
                     LTLSEFAPLKRYLGDQPNKEQYQLKLYQLSAKIAELFDQYLVYRPHWLVSWEEGNLQA
                     IENEIKIATAAKPIDFDLIRADMKWQSHLWQQIVSDLQSESDEQVFTTSHRAYLQQNY
                     FAKLDDLTETEKAKLPKRIFIFGISSFSPLQLAVFKKLSEHCDIHLFFFNPSEKYWGD
                     SVEEKVWQKLALSHKISQDDLDNLLAEQRNKLLNLWGKQGRDFLAQLIEFEPNTMDVF
                     VEPEENSNLNKLKKQIFSLENDATITDLTADNSLQIHSCHSPMREVEVLHNQLLNLFE
                     QDSTLLPKDIIVMSPDINKYAPYIDAVFSRYNTGNRDPRYIPFSLSDQAFTQVDPIIH
                     SFLQLLAMKESPFNAEELFDLLEVNAIQTRFGFSTEDIHTLRVWVRNAGVRSGVEIEQ
                     PHWQNYNSWENGLNRLLLGSSLKEEQGIWENTLAFGDSYGLNAELVGRLASFIEALLA
                     WVNFLQTPQPLAAWQQAIKNLTADLYQENAENAASILLLNNVNDQIIEQISATHFSDD
                     LQIEVLALLFEQQLSQHSQQLNFLVGRVNFATLLPMRAIPFKVICLLGMNEADFPRQQ
                     QINSFDLMQYAPKKGDRAKRDDDRYLFLEALLSAQQMFYISYIGQSQKDGKEMLPSIL
                     VSQLLDAMNEALTPECKQQLSDEVEVLVRKQPLSVFSKKNFTHPRDHAYNAEWIIKPT
                     VAVQDFLSEPLTNESVASLELDELISFVQNPIRFFFLKVLGISFNTYDDTIDESEIFE
                     MSGLDNYRILNELLTINLAQQQRFFAEEQLKGNLPASYFAQIATQDLIGKITEMQAAL
                     SHYLASESRILSVNREVELERQTLTLNGNIANLYQNEVVLWRVGHLRDKDKIQTWIYH
                     LLLCAYFPEKTVKFYYREGEQVGVLSFETVSQIEALSQLSIYLNAYLDGLSQAQLVIY
                     DRIEEYLKGDGTNSEQVLIDLAEKDERDGSYLHRLLAQTKELDSQAIHQRTQSWFSLM
                     NQKIAKGD"
     gene            4270..7215
                     /gene="ptrA"
                     /locus_tag="PXC99_001089"
     CDS             4270..7215
                     /gene="ptrA"
                     /locus_tag="PXC99_001089"
                     /EC_number="3.4.24.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin"
                     /protein_id="HDL5417551.1"
                     /translation="MKLSFLTQFVAAAFALNVMTYPAFAEVAKNSEKTTASQPQSQLG
                     FELIKQSINKSPNDKAIYQGIKLDNGMEVLLISDSQANKSLMSAIIPIGSMDDPISQQ
                     GLAHYLEHMILMGSKNYPETNSLDGFLTKNGGMNNASTASHRTAYYLQVNNEAFSEAV
                     TRLADTLAFPLLLETNAKKEVNAVNAEMVRAKSHDGHLLHSVNLATANPAHPATKFAV
                     GNKETLSDKPDSKLQTELEQFYKQHYSANLFKVVLYSNQSIEQMAKLAANTLGKMENK
                     HFSIPQTAEPRYRDEDKSVFIQYKPVKSNKMLVIGFDFPNDEMQFKHKTGKYIAYMLN
                     NNTDGTLSDYLIKQGLSDGGIEAVSSANIGRDRGSFDIYIELTDKGLSEQDQIISLVF
                     QQIEKIKQEGIQESYFSEVKESLKQDFQHLQVEKNMDFVEFIADQMLHFPLEHVIDQP
                     YLTETMDNEAIKAKLAAMNIDNARIMLVSDTAKTDKKTPYFEAGYSVAKITQEQKQKW
                     LDFSKNPQLNLPELNPYFTTDFTLNKVETGLTKPKLINDQAGNLIYTMPSVYFTNEPK
                     AKIGVGFNIRPRKDDLKSLTAASILGYMNNLAQTKLDFQSSVAGMNLSLAPAANGLAL
                     SAEGYTQNLAKLMLDSVKQFSRFEFNEDVLAQAKQRLHQELDRNEKENSLNQANAALS
                     RFASYPYFDVPKQREMIDSITLADIEQLRQRILQQSSGFKLLSVGNLSAEQVSALAED
                     LQAVIKNQKSANATGQYVDVSTSQRKINVIKSVPNEDNALLMAFMPNGYNELESLTRA
                     KLLRSIISRWYFDDLRTDKQLGYVVYATDNIIGKTAGIQFMVQSPNTTPAGILEHNER
                     FFTQSFERLKNLSDEEFGKYRDSLVEKLQYKPESLAEEFSEFGSDFSRNNPKFDRLQQ
                     VIELTKALTKADIVAFYQKAVIEKQGFVFVSQAVGTKTKAEDVAKFDGFEQIESIEKL
                     QREFEIKDY"
     gene            complement(7264..8910)
                     /locus_tag="PXC99_001090"
     CDS             complement(7264..8910)
                     /locus_tag="PXC99_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5417552.1"
                     /translation="MKFPTLTKISASVLAVLALAACDDKSNENKPTAAAAKPQTEKTF
                     VNCVSRSPTGFSPILMMDGLSYNASSQQIYNRLVEFVPGTTDIEPALAESWEISEDGL
                     TYTFKLRKGVKFHSNKDFTPSRELNADDVVFSFNRQLDKNHPYHTVSNGTYPYFNAMK
                     FPTLLKSVEKVDDSTVRITLTKRDASFLSSLGMDFTSIYSAEYADKMMKAGIPEAVDT
                     TPIGTGPFVFSGYVLDQASRYVANKEYWKGKPDIDRLIFEIVPDATTRYAKLQSGQCD
                     LMDFPNATDIEKMKNDPKINLLSQPGLNIAYVAFNTEKAPFDNVKVRQALNLAVDKKA
                     IIDVVYQGNGFAAKNPLPPTIWGYNDSLADSEYNVEKAKQLLAEAGFPNGFETELWVQ
                     PVVRASNPNPRRMSEIIQADWEKIGVKAKLVTYEWGDYIKRTKAGELTAGTYGWSGDN
                     GDPDNFLSPLFGTPNIGNSNYARFTNPELDALLEKALGSSDKAERTKLYEQAQVILRE
                     QAPWINVAHSINFAPTSKRVEGYKQSPFGYTYLYPVKIVD"
     gene            8986..11076
                     /locus_tag="PXC99_001091"
     CDS             8986..11076
                     /locus_tag="PXC99_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
                     /protein_id="HDL5417553.1"
                     /translation="MIFANQSIELDTVNVIATRDPSKFADTPQKQTKDALLVKQATSV
                     AAALKALPNVDVQGGARAIVQKPSIRGLSDNRIVQVIDGVRQNFDLAHRGSYFVPMSL
                     IQEIEVIKGPSSSLWGSGALGGVVAMRTPNALDLLKNNDKFGAKIRQGYQTANNLSET
                     EASVFAANDRFDALLSGFYNNADNLRSGEGKELNNTGYKQAGGLVKFGWQINDTHRLE
                     LSHRHSQFKQTAPGNNEVENQFTDNDVSAQISAWHAANPGNPSNPVYLAKMLAFYGQL
                     HSSLGSVSYLSDQKITDKSTSLNYYFNPSNPYLSTQVTLYSNSTTENEHRKISGVEDQ
                     TKLSTRGVNIRNHSELSWFSLVYGVDYMLDKVATQRGRNNTDAQYRANPYDAKSKTTG
                     AYLIAHIPLFDEKVVFSPSVRYDRFDTSSETVKYKDSHWSPAAKLTWKATNWLDLTAK
                     YNEAFRAPSMQERFVSGSHFGTTVRGLPINNIFLTNPNLRPETAKNKEVTFNVHFDNV
                     ISQGDKFNFEATYFRNDVKDLINLQVFKANPTSPMEFIPTRSQYQNIANARLSGIELQ
                     TRYQTERLAVFANYGSTKGKDKDSGEALSNIAASKIGFGVNYAVVQDKFTVGANVTRY
                     QAQHRVPKNHGVTYQGYTLTDLHATYAPLKGEWKNLRLDVAVENLFDKKYQPAFSLME
                     GSGRNVKLSAAYSF"
     gene            11147..12835
                     /locus_tag="PXC99_001092"
     CDS             11147..12835
                     /locus_tag="PXC99_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HDL5417554.1"
                     /translation="MKFYPSLIASAVSFAVVLSGQAAVNVPDAGSLQRELDQRQAQQK
                     VKPSGEWFNQAAKAPYTATDGQELTFPLTQVQVFDRTNQEISTPELAPILANYVGKAV
                     SLTDLSNLANEITEFYRSHNYLVAKAILPPQEIEQGKVKILLFKGNVGEVRLQNQSAL
                     SDKFVARLANTTVNGSEFILKDELEKFALTMNDVPGVNTGLELSAGKQAGEANLLIKL
                     QNAERFSGYVSADNQGNKNTGRYRLATGIKANNLIGWGDELKVDLMSSNNANLKNARL
                     DYSSLIDGYATRLGLTANYLDYELGGNFKALQSQGHTHNLGAYVLHPTIRLPDFRLNT
                     KVSFNHQRLTDKQQAVNVAQKRQVNSLTVGINGSWNSLKDGTSYFSLSALFGNLANHT
                     NEQAHYVATDFQPKSRFTVYQYSLSHEQALPKSFAFNLGVNGQFADKTLDSSQKMLLG
                     GLYGVRGHQAGVASVDEGHLVQTELKHYLPLFSKSLLTSSVFYDYGWGKYYKHSGFLA
                     RGVNNSVKLQSIGAGLSLSEAGSYAINASVAKPLGKKIENADKHQFWFSAIKTF"
     gene            12847..15663
                     /locus_tag="PXC99_001093"
     CDS             12847..15663
                     /locus_tag="PXC99_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HDL5417555.1"
                     /translation="MFKRNAISLCILTACSGLAYANTADLPQGERVRVGTATIERTTD
                     KMTVNQSSNKVQIDWNSFDIGKNKEVEFKQPTEMAVAYNRVTGGNASQIQGKLTANGK
                     VYLANPNGVLITKDAEVNVGGLLVTTKDLEKISENGTKDKFSRKLAKEGKILNQGKIT
                     AKGERAFVVLVGDDVANEGEINAKNYYHKETKKVTECYDDSWSLVKQCYDFDKEIVKS
                     TSGEVHLSSGENVTFTLSDRYIDVALDDNTVNSIIKNDGAIIANGDITLTAKGRNQAL
                     DSLIINNGVLQANKVQNKNGTIILSAGETQLHEKSQIKGEKVSFAEASYYGPTEDIKV
                     VSKTGSKVTAPVIDFKGKTVNIQGEFGREDSTDLYNDELQILKTTVNIEVPNTEDIRI
                     ADTDNGGSGSFIQAGALASLLANNGRVNVQGKGFDVSGKLNVNAFKQTDSVLKFINQA
                     GINIHNADIHANGRLFFVTNLPNDTDFQSNIRITDSKINLGNGSMGFGRSSKRWEMHD
                     VVRRADTELRKKFNLDMKNVELNQVDDFVVAGGFQQVNLDNVKARGKTNFYLDSGNSR
                     MFVGEQIYEYGVTDIEKRTQLANLDQRRKRWNSDNYDETDLNWEYNQRFDGFAAKHNH
                     RAPIADTEINIANSDISLDNGFVHLMAEKINLDDSKINITFNQDNSLDESTQINRLGL
                     NGKVSMKNSHINVVGDEKDGISPARHYATMFLVGELLGEKSSIFLKSHQGAVLRTDSN
                     VTIAGKNSKDDLKITAITTGKKMGNEIIGPDGLPTSEDNDANASNTAFAIGYEPNATA
                     IVENASITALAPNGGLAYTGTSKTQIDAKDNATFTFFEKPRAGYDKLLGDIKGNPDKL
                     TPRDFARLYDNIKGIKASSLSEQQLGLADTAKKTSEHTLANSLDVENLVSVTVCDEQN
                     KCEERMLGNKNTNAKVIVGDIKFE"
     gene            15786..15917
                     /locus_tag="PXC99_001094"
                     /pseudo
     CDS             15786..15917
                     /locus_tag="PXC99_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587011.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            complement(15972..16733)
                     /locus_tag="PXC99_001095"
     CDS             complement(15972..16733)
                     /locus_tag="PXC99_001095"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HDL5417556.1"
                     /translation="MKLNQAQIQNALICGQAVVFDEIDSTNEYLLTHHQRLENGTVCL
                     AEKQTAGRGRRGRTWYSPESENLYFSILWHYPMEQAADLPPLSLVVALIIAESLTVQN
                     VKDIQIKWPNDIYYQGKKMGGILLETQANRNGLDVVIGIGLNLGMAKVDENIVTQAWA
                     DLSQYHFNRNELVCRLAYELQKNLKIYPLVGFAHYAERWQSFDLFRHKAVKLITEAEE
                     IHGISQGINEQGELILKQGDNLRYFGIGEISLRAD"
     gene            complement(16745..17776)
                     /gene="murB"
                     /locus_tag="PXC99_001096"
     CDS             complement(16745..17776)
                     /gene="murB"
                     /locus_tag="PXC99_001096"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HDL5417557.1"
                     /translation="MMKHSLTPFHTFHLPAKATQIIEFTTVEQLLSEWQKAFNAQLPI
                     LILGQGSNVLFLEDFDGVVLVNKLKGITHHEDEHFHYLHVQGGENWHELVKWTLAHNI
                     AGIENLALIPGVASSAPIQNIGAYGVEFEQVCDFVEVLNLRSGELFKLSKSECEFGYR
                     ESVFKHQYRDEFAIISVGLKLAKAWKPVLSYGSLAQLNPETVTPIQIFDEVCAVRSSK
                     LPNPDEFGNAGSFFKNPVISNEQFAPIQAKFPAIPHYPQADGTVKLAAGWLIDQTGLK
                     DLQIGGAAVHTQQALVLINKENATGQDVLALAKTVRQRVKEKFGVEIQPEVRFIGKNG
                     EVDSEKITR"
     gene            complement(17880..18554)
                     /gene="crp"
                     /locus_tag="PXC99_001097"
     CDS             complement(17880..18554)
                     /gene="crp"
                     /locus_tag="PXC99_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010787261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cAMP-activated global transcriptional regulator
                     CRP"
                     /protein_id="HDL5417558.1"
                     /translation="MQDMTLSTAPLENVTPPPSIHDPAVEWFLTHCHIHRYPAKYTLI
                     HAGEDAESLFYIVNGSVSVYIKDDETKEMLLTNLGTGEFVGELSLFEEKVQQRTAYVR
                     TKGPCEIAEISYKKFKQLVHLNPDILMYLSAQMARRLRQTSRQVGNLAFLDVAGRIAQ
                     TLLNLAKMPDAMTHPEGMQIKITRQEIGQMVGCSRETVGRIIKMLEDEGLISAHGKTI
                     VVYGAR"
     gene            complement(18616..18834)
                     /locus_tag="PXC99_001098"
     CDS             complement(18616..18834)
                     /locus_tag="PXC99_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheU family protein"
                     /protein_id="HDL5417559.1"
                     /translation="MIIPWQELEESTLHNILDSFILREGTDYGERELSLAEKRERLLT
                     QLKADKVVIVWSELHESLDIKDKKSFLG"
     gene            complement(18837..19442)
                     /gene="slmA"
                     /locus_tag="PXC99_001099"
     CDS             complement(18837..19442)
                     /gene="slmA"
                     /locus_tag="PXC99_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid occlusion factor SlmA"
                     /protein_id="HDL5417560.1"
                     /translation="MTEPKIKMPKKSVVERRQQVLEVLISLLNSEEGMQRITTERLAA
                     AVGVSEGALYRYFPSKTKMFEALIEKIEQTLTSYIHANKRQDSSANSVRAILYVILEF
                     ARKNPGVTRILTGHALMFEEELLKARVAKFFDNLELQFANILQLSKLRERKSFEDERA
                     LAGYLVNFCEGQFLRLVRSNFSYNQHQHFEKQWAFIKPLFD"
     gene            complement(19454..19909)
                     /gene="dut"
                     /locus_tag="PXC99_001100"
     CDS             complement(19454..19909)
                     /gene="dut"
                     /locus_tag="PXC99_001100"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HDL5417561.1"
                     /translation="MKQIDLKILDSRIGNEFPLPAYATEGSAGLDLRAMLNEPLTVKA
                     GETVLIPTGISIYIADPNLAAVILPRSGLGHKNGIVLGNLVGLIDSDYQGELKVSLWN
                     RSQADFTVNVGDRIAQLVFVPVVQASFNIVQEFEQTDRGEGGFGHSGKQ"
BASE COUNT         6037 a         4187 c         4390 g         5540 t
ORIGIN      
        1 ataaaacgca aatatgccaa aaatttcaaa aagagcagat cagccaagcg gatttatccg
       61 ataaacaatt caggttttta cagtatcaat ttgcctgcca attccatagt ttatttaaag
      121 ataaaaaacc gactaaagag aaatatattc actttaccca tttggcggat tatttagatt
      181 tatcaaatgt gccaaaccaa gagatttata ctattcattc tttagctgaa ttacctagta
      241 gcagtgaacg tgagcctaaa attgtgcttg ctaaaaacgc aattaatgaa aacttaccgc
      301 aagagtttta cggcattgtg ataaccgact atctgtttga tattaccggc aaaaaaatgt
      361 acggcacgct ttattcctct tatgataatg cccgagagga gcgaaattta acgtttaaaa
      421 aagaggtact ggcagagctt gaggcgaggt attccgcttg gcgatatttg ccatattccg
      481 aacatttgat gggagcggtt gatgattaaa tataaagcag aaacggcttt gtcgcttttg
      541 gttgccatca cgctatttgc gattgtggtg ttgagtttca gccagtggca atcggcacaa
      601 aaccacaggc taaatcaaca tttccaacag caacaagcgg ttatgatttt agaaaatcag
      661 cttgccctca aattagccgg gttagattgt gaatcaagta ttactcaaaa tcagattcgc
      721 tatcagattc aatgctctgg caatcgctta accattcgct ttccgttagg caaaattgag
      781 ctgaataatg attgaatcgt ccctcgcttt ggaggacaat aattcaatta gcgaggcgtt
      841 attatgttta cactttacca atccaaccaa atttcatcac tggcggagat gctggtgaaa
      901 atccagcagg taaacccact tgaagatccg tttgagccgg aaaccatttt gatccaaagt
      961 cagggaatgg cacagtggct acaaatgcag attgctgaat taaacggtgt gatggggaat
     1021 tgcgattttc tctaccctac tacattttta tggcaacagt atcggctgtt gttcccggag
     1081 ctgccgaaag agaatatttt tgagcgtagt tcgttggttt ggcggattat gcggttattg
     1141 ccgagttgct tgacactatc ggagtttgct ccgctaaagc gttatttagg tgatcaacct
     1201 aataaagaac agtatcagct taagctctat caactttctg ccaaaattgc cgaattgttc
     1261 gaccaatatt tggtgtatcg cccccattgg ctggttagct gggaagaggg caacttacaa
     1321 gcgatcgaaa atgagataaa aattgcaact gccgctaagc cgattgattt tgacttaatt
     1381 cgagccgata tgaaatggca aagccattta tggcaacaga ttgtatctga tctgcaatcg
     1441 gaatctgatg agcaggtttt tactacctcc caccgtgcct atttgcaaca aaattacttc
     1501 gctaagttag atgaccttac tgaaacggaa aaagccaaat tgccaaaacg cattttcatt
     1561 tttgggattt cgtccttctc gccattacag ttagcggtgt ttaagaaact cagcgagcat
     1621 tgcgatattc acctgttctt ttttaaccca agcgaaaaat attggggcga cagtgtggaa
     1681 gaaaaagtgt ggcaaaaatt ggcgttaagc cacaagattt cgcaagacga tctggataac
     1741 ttattggcgg agcaaagaaa taaactactg aatctttggg gcaaacaagg gcgggatttc
     1801 ttagctcaat taatcgaatt tgagccgaat accatggatg tctttgtcga accagaggaa
     1861 aacagcaacc tcaataaact caaaaaacag attttcagct tagaaaatga cgccactatt
     1921 accgatttaa ccgccgataa ttcactccaa attcattcgt gccacagccc aatgcgggaa
     1981 gtggaagtgt tgcataacca gctcctgaat ttgtttgagc aagatagcac tttgctgccg
     2041 aaagatatta ttgtgatgtc gccggatatt aataaatacg ctccttacat tgatgcggtg
     2101 ttttctcgct acaatacggg taatcgggat cctcgctata ttcctttttc attatccgac
     2161 caagcattta cgcaggttga tccgattatc cacagtttcc tgcaactgct ggcaatgaaa
     2221 gaaagcccgt ttaatgccga agaactgttt gatttactgg aagtgaatgc gatccaaacc
     2281 cgttttggct ttagtacgga agatattcat accctgcggg tttgggtgag aaatgccggc
     2341 gtacgttcgg gtgtagaaat cgagcaacct cactggcaaa actacaattc gtgggaaaac
     2401 gggctaaacc gtttattgct tggctcaagc ctgaaagaag agcaggggat ttgggaaaac
     2461 acccttgcct ttggggatag ctatggctta aatgccgagc tggtggggcg acttgcctct
     2521 tttattgagg ctttattagc gtgggtaaac tttctgcaaa cgccacagcc gttggcagcg
     2581 tggcagcagg caataaaaaa tttgactgct gatctgtatc aagaaaatgc cgaaaatgct
     2641 gcatcaattt tattgttgaa taatgtgaat gatcagatta tcgagcaaat ttccgcaacc
     2701 catttttcag acgatctgca aattgaggtt ttagccttat tgtttgagca gcagctcagc
     2761 caacattcac agcagcttaa tttcttggtc ggacgggtga attttgccac cttgcttccg
     2821 atgcgggcga ttccgtttaa ggtaatttgc ttgctgggta tgaatgaggc agatttccct
     2881 cgccaacaac aaatcaatag ctttgattta atgcagtacg ccccgaaaaa gggagaccgt
     2941 gccaaacgtg atgatgaccg ctacttgttc ttagaagcct tactttccgc tcagcaaatg
     3001 ttttacatca gctatatcgg gcagtcgcaa aaagacggca aagagatgct accgtcgatt
     3061 ttggtttccc aactgttaga tgcaatgaat gaagctttaa cgcctgaatg caagcaacaa
     3121 ttaagcgatg aagtggaagt tttggtcaga aaacaacctt taagtgtgtt tagcaaaaag
     3181 aattttaccc acccacgaga tcacgcttat aacgcagagt ggattatcaa gccgactgtt
     3241 gccgtacaag attttcttag tgagccttta accaatgaaa gcgtggcttc gctagaactt
     3301 gatgaattaa tctcttttgt acaaaacccg attaggtttt tctttctaaa agtgttgggg
     3361 atttcgttta acacttatga tgacaccatt gatgaaagcg aaatttttga gatgtcgggg
     3421 ctggataact accggatttt aaacgaatta ttaacgataa atttagcaca acagcaacgt
     3481 ttttttgccg aagagcaact caaaggcaat ttacctgctt cttattttgc tcaaattgcc
     3541 acacaagatt tgatcggcaa aattaccgaa atgcaagcgg cgttaagcca ctatttagcc
     3601 agcgaaagcc gtattttgag tgttaatcgg gaggttgagc tggaacgcca aaccctcacc
     3661 ctaaacggca atattgccaa cctatatcag aatgaagtgg tgctatggcg agtagggcat
     3721 ttacgagata aagacaagat tcagacttgg atctaccatt tattattgtg tgcctatttc
     3781 cctgaaaaaa cggtgaaatt ctattaccga gagggtgagc aagttggtgt gttgagcttt
     3841 gaaaccgtct cgcagataga ggcattatcg caattaagca tttatttgaa tgcttatttg
     3901 gacggattat cgcaagccca gttagtgatc tacgaccgaa ttgaggaata tctcaaaggt
     3961 gatggcacaa acagcgaaca agttcttatc gatttagcag agaaagatga gcgagacggc
     4021 agctatctcc atcggcttct cgctcaaact aaagagctgg attctcaagc gattcaccaa
     4081 cgtactcaaa gctggtttag cttaatgaat cagaaaatag cgaaaggcga ttaactacaa
     4141 gcggtcgttt ttggctgaaa atttgcaaaa tgagaaggcg aataataatt cgcctaccta
     4201 taaaaataga attttttccg tattttactg tcaatttatt actacaatgc taatttcaaa
     4261 aggagatgta tgaaattatc ttttcttacc caattcgttg cagcggcttt tgccctcaat
     4321 gtgatgactt accctgcatt tgcggaagtt gcaaaaaatt ctgaaaaaac gaccgctagt
     4381 caaccccaat cccaactcgg ttttgagctg attaaacaga gcattaacaa aagcccgaat
     4441 gataaagcga tttatcaagg tattaaactt gataatggaa tggaagtgct actgatttcc
     4501 gacagtcaag cgaataaatc gttgatgtct gccattattc cgattggctc aatggatgac
     4561 ccgatttctc agcaaggttt agcccactat cttgagcata tgatcttgat gggctcgaaa
     4621 aactatccgg aaaccaacag cttagacggt tttttaacca aaaatggcgg tatgaataat
     4681 gcctcgactg cttctcaccg cacggcgtat tatctacaag tcaataacga agcctttagc
     4741 gaagcggtaa cacgactggc ggatacgtta gctttcccgt tattgctgga aaccaacgcc
     4801 aagaaagagg ttaatgcggt caatgcggag atggtgcgag ctaaatcgca cgatgggcat
     4861 ttattgcaca gtgttaattt agccaccgca aacccggctc atcctgctac caaatttgcg
     4921 gtaggcaata aagagacgtt atctgacaag ccggatagca aattacaaac cgagttggag
     4981 caattttata aacagcatta ttctgcgaat ctgtttaaag tggtgcttta ttccaatcaa
     5041 tcgattgagc agatggcaaa attggcagcc aacactttag gcaaaatgga aaacaaacat
     5101 ttcagcatac cgcaaaccgc tgagccacgt tatcgtgatg aggacaaatc ggtatttatt
     5161 caatataagc cggtgaaatc caacaaaatg ttagtcattg gctttgattt tccgaatgac
     5221 gaaatgcagt ttaagcacaa aaccggtaaa tatattgctt atatgttaaa caataatact
     5281 gacggcacgc tttcggatta cttgattaaa caggggttgt ctgacggcgg tattgaggcg
     5341 gttagcagtg ccaatatcgg gcgggatcga ggctcgtttg acatctatat tgaactgaca
     5401 gacaaaggtt tgagcgagca agatcaaatt atttcattgg ttttccaaca aattgagaag
     5461 atcaaacaag aaggcattca agagagctat tttagcgaag tgaaagagag cctgaagcag
     5521 gatttccaac atttgcaagt ggaaaaaaat atggatttcg tggaatttat tgccgatcaa
     5581 atgctccatt tcccgttaga acacgttatc gatcagcctt atctgaccga aacaatggat
     5641 aacgaggcaa ttaaagcaaa attggcggca atgaatattg ataatgcccg cattatgtta
     5701 gtcagcgata ctgccaaaac cgacaagaaa accccttatt ttgaagcagg ttattcggtg
     5761 gcaaaaatca cgcaagaaca aaagcaaaaa tggctggatt tcagtaaaaa tccacagctc
     5821 aatttgcctg aattgaaccc gtatttcact accgatttta ccttaaacaa ggtcgaaacc
     5881 ggcttaacta aaccgaaatt gattaacgac caagcgggga atttaatcta tacaatgccg
     5941 agcgtgtatt ttaccaatga accgaaggct aaaatcggcg ttggctttaa tattcgcccg
     6001 agaaaagatg acttaaagag cctgaccgca gcgtctattt tgggttatat gaacaattta
     6061 gcccaaacca agttagattt tcagtcttcg gtggcgggta tgaatttaag tttagctccg
     6121 gcggcaaacg gtttagcctt aagtgcagag ggttataccc aaaatctggc taaattaatg
     6181 ctagacagcg taaaacagtt cagccgcttt gagtttaacg aagacgtgtt ggcacaggct
     6241 aaacaacgtt tgcaccaaga gctggatcgt aacgaaaaag aaaacagcct taatcaagct
     6301 aatgcagcat taagccgttt tgcctcttac ccttattttg atgtgccgaa acagcgtgag
     6361 atgattgata gcattaccct tgcggatatt gagcaactac gccagcgaat tttgcagcag
     6421 agcagcggct ttaagttgtt atcggtgggg aatttgtcgg ctgagcaggt ttctgctctg
     6481 gcagaggatt tacaagcggt cataaaaaac caaaaatctg caaatgctac cggacagtat
     6541 gtggatgtga gtaccagtca gcgtaagatt aatgtgatta aaagcgtgcc gaatgaagat
     6601 aatgcgttgc taatggcatt tatgccgaac ggctataacg agctggaaag ccttactcga
     6661 gccaaattgc tcagaagcat tatttcccgt tggtattttg atgatttgcg tactgataag
     6721 caactaggct atgtggttta tgcgacagat aatatcatcg ggaaaaccgc cggtatccag
     6781 tttatggtac aaagcccgaa taccacaccg gcagggattt tagagcataa cgaacgtttc
     6841 tttacacaaa gtttcgaacg tttaaaaaat ctatctgatg aggaatttgg aaaatatcgt
     6901 gatagcctag tggaaaaact gcaatataaa ccggagtctt tagcggaaga gttttctgag
     6961 ttcggttcag actttagcag aaataacccg aaatttgacc gcttgcaaca ggtgatcgaa
     7021 ttaaccaaag cactcaccaa agcagatatt gtggcatttt accaaaaagc tgtgattgaa
     7081 aagcaaggct tcgtgtttgt cagccaagct gtcggcacca aaaccaaagc tgaagacgtt
     7141 gcgaaatttg acggttttga acagatcgaa agcattgaaa agctacaacg agagtttgag
     7201 attaaggatt attagagagt tattagagag agttaggggc gaaaaatttt cgcccctcat
     7261 tttttaatcc acaattttca ccggatataa gtaagtatat ccgaacggac tttgtttgta
     7321 gccttcaaca cgtttgctgg ttggggcaaa gttaattgag tgagccacgt taatccacgg
     7381 agcttgctct cttaagataa cctgtgcctg ctcgtataac ttagtacgtt ctgctttatc
     7441 agatgagcct aatgcttttt ctaataacgc atctaactca gggttagtaa agcgagcata
     7501 gttactgttg ccgatatttg gcgtgccgaa tagtggcgat aagaagttat ccggatcgcc
     7561 gttatcgccc gaccaaccgt aagttccggc ggttaattca ccggctttgg tacgcttgat
     7621 gtaatcaccc cattcatagg tgactaattt tgcttttacg ccgatttttt cccagtcggc
     7681 ttgaataatt tcagacatac ggcgtgggtt cgggttagaa gcacgcacca caggctgcac
     7741 ccataattcg gtttcaaaac cgttcgggaa gcctgcttca gctaatagtt gcttcgcttt
     7801 ttccacgtta tattctgaat ccgctaagct gtcgttatag ccccaaatgg ttggcggaag
     7861 tgggtttttc gccgcaaaac cgttaccttg gtaaactaca tcaataatcg cttttttatc
     7921 cactgctaag tttaacgctt ggcgaacttt cacgttatca aacggagctt tttcggtatt
     7981 gaatgccaca taagcaatgt tcaaacccgg ttgagaaagt aaattgattt tcggatcatt
     8041 tttcattttc tcaatgtcgg ttgcatttgg gaagtccatt aaatcacatt gaccggattg
     8101 taatttcgca taacgggttg ttgcatccgg cacgatctca aaaatcaaac ggtcaatgtc
     8161 aggcttacct ttccaatact ctttgtttgc tacataacga ctggcttggt ctagcacata
     8221 accgctaaac acaaacggac ctgtgccgat tggcgtggta tctaccgctt caggtatgcc
     8281 ggctttcatc attttatccg catattccgc cgaataaatg gaggtgaaat ccataccaag
     8341 gctggataag aatgacgcat cacgtttggt taaggtaata cgaacggtgc tgtcgtccac
     8401 tttttccacc gatttcaata atgtcgggaa tttcattgcg ttgaaatacg gataagtgcc
     8461 gttagagacg gtgtgatacg gatgattttt atctaactga cggttaaatg aaaatactac
     8521 atcgtccgca ttcaattcac ggcttggagt gaagtctttg tttgaatgga atttcacgcc
     8581 tttgcgtaat ttaaaggtgt aagttaagcc gtcttcgctg atttcccagc tttctgccaa
     8641 tgccggttca atatcggttg tacccggcac aaattccacc aagcggttgt aaatttgttg
     8701 cgagctggcg ttataagata aaccgtccat cattaaaatc gggctaaaac cggttggcga
     8761 acggctaacg cagtttacaa aggttttctc ggtttgcggt tttgctgctg ccgcagtagg
     8821 tttattttcg ttgcttttat catcgcaagc cgctagagct aataccgcta aaacgcttgc
     8881 actaattttg gttaacgttg gaaatttcat attattctcc gcttaatctt aggattaact
     8941 tacgaagatt accttttcca caatgaggag taaagaacaa aaagcattat ttttgcaaat
     9001 caatccatag aattagatac cgtcaacgtc attgccaccc gtgatccaag taaatttgcc
     9061 gatacgccac aaaaacaaac taaagatgca cttttggtaa aacaagcgac gagtgtggcg
     9121 gcggcattaa aagcgttgcc gaatgtggat gtgcaaggag gggcccgtgc gattgtgcag
     9181 aagccgtcta ttcgtgggtt gagcgataat cgtattgtgc aggtgattga cggagtgcgt
     9241 cagaattttg atttggctca ccgtggttct tattttgtgc cgatgtcatt gattcaagaa
     9301 attgaagtaa tcaaaggtcc aagcagctcg ttgtggggga gcggtgcctt aggtggggtg
     9361 gtggcaatgc gcacaccgaa tgcgttggat ttattgaaaa ataatgacaa attcggggca
     9421 aaaatccgtc aaggttatca aacggcgaat aatctttccg aaaccgaagc ctcggtgttt
     9481 gcagcaaatg atcggtttga tgccctgctg agtggtttct acaataatgc tgacaatttg
     9541 cgtagcggtg aaggcaagga actgaataac acgggctata agcaagccgg cggtttagta
     9601 aaattcggct ggcaaattaa cgatactcat cgtttggaat tatcccatcg tcatagccaa
     9661 tttaaacaaa ctgcaccggg taataacgag gtagaaaatc aatttaccga taatgatgtt
     9721 agtgcacaaa ttagtgcttg gcatgcggct aatcctggaa atccaagtaa tccagtatat
     9781 cttgcgaaaa tgttagcctt ttacggtcaa ttacattcaa gtcttggtag tgtgagttat
     9841 ttaagtgatc aaaaaattac cgataaaagc acctcactta actactattt caacccaagc
     9901 aatccttatt tgagcacaca agtgacatta tatagcaata gtaccactga aaacgaacat
     9961 cgaaaaataa gtggtgtgga agatcaaact aaactaagca ctcgtggtgt gaatatccgt
    10021 aatcattccg aattgtcttg gttctccttg gtgtatggcg tggattatat gttggataaa
    10081 gtagccactc agcgtgggag aaataatacg gacgcacaat accgtgctaa tccttatgat
    10141 gctaaatcta aaactacagg tgcttattta attgcacata ttccgctgtt tgatgaaaaa
    10201 gtggtctttt ctccgagcgt gcgttacgac cgtttcgata cttcaagtga aacggtgaaa
    10261 tataaagaca gccattggtc tcctgctgca aaacttactt ggaaagcgac aaattggttg
    10321 gatttaaccg cgaaatataa cgaagctttc agagcccctt ctatgcaaga acgatttgtg
    10381 agcgggtctc attttggtac cacagtgaga ggattaccta ttaataatat tttcttaact
    10441 aaccctaatt tacgcccgga aacggcaaaa aataaggaag taaccttcaa tgtacatttt
    10501 gataatgtca tctcgcaagg agataaattt aactttgaag cgacttattt ccgtaatgat
    10561 gtgaaggatt tgattaatct tcaagtattc aaagcaaatc ctacaagccc aatggaattt
    10621 attcccactc gttcccaata tcaaaatatt gcgaatgcac gtttgagtgg tattgaatta
    10681 caaactcgtt atcaaactga acgtttggca gtttttgcta actacggtag tacaaaaggt
    10741 aaagataaag acagcgggga agccttgtcg aacattgctg caagcaaaat cggcttcggg
    10801 gtcaattatg ccgtggtgca agacaaattc acggtggggg caaacgtaac ccgttatcaa
    10861 gcacaacatc gtgtgccgaa aaaccacggc gtgacttacc aaggctatac gctgaccgat
    10921 ctacacgcca cttacgcccc attaaaaggc gaatggaaaa acctgcgttt agacgtggcg
    10981 gttgaaaacc tattcgataa aaaataccaa ccggcattca gcttaatgga aggcagcggt
    11041 cgtaatgtga aactcagtgc ggcttacagc ttctaatgtc tttaacggaa gacggcacaa
    11101 gcggtcgttt tccggttatt ttttgcaata ttaaaaggga gttactatga aattttatcc
    11161 gtcgctgatc gcaagtgcgg tcagttttgc cgttgttttg agtggacaag cggcagtgaa
    11221 tgtgccggat gccggctcgt tacagcgtga attagaccaa cgtcaagctc aacaaaaagt
    11281 caaaccgagt ggcgaatggt ttaatcaagc ggcaaaagca ccttataccg caacggacgg
    11341 tcaagaactg acatttccat taactcaggt acaagttttt gatcgaacca accaagaaat
    11401 ctctaccccg gaattagccc cgattttggc aaactatgtg ggtaaagcgg tttcgctgac
    11461 cgatttaagc aacttggcaa atgagatcac cgagttttat cgtagccaca attatctggt
    11521 ggcaaaagcc attttaccgc cacaggaaat tgaacaaggt aaggtgaaaa tcctgttgtt
    11581 taaaggcaat gtcggtgaag tgcggttaca aaatcagagt gctttaagcg ataaatttgt
    11641 tgcacgcctt gccaacacca cagtgaatgg ttcggaattt atcctaaaag acgaattgga
    11701 aaaatttgcc ctcacgatga atgatgttcc cggggtgaat accggcttgg agctttctgc
    11761 cggtaagcaa gcaggcgagg cgaatttgct gattaagctc caaaatgccg agcgtttctc
    11821 aggctatgta tcggcagata accaaggcaa taaaaatacc ggacgttacc gtttagccac
    11881 agggataaaa gccaataatc tgataggttg gggcgatgag ttgaaagtgg atttgatgag
    11941 ttccaacaac gctaatttaa aaaatgcgcg tttggattat tcgagcttga ttgacggcta
    12001 cgctacccgt ttgggcttaa cggcgaatta tctcgactac gaattaggcg gtaactttaa
    12061 agccctgcaa tcccaagggc atactcacaa tcttggggct tatgtgttgc acccgacaat
    12121 ccgcttgccg gattttcggt taaacaccaa agtcagcttt aatcatcaac gtttaaccga
    12181 caaacaacaa gcggtcaatg tggcacaaaa acgccaagta aacagcttaa cggtgggcat
    12241 taacgggtcg tggaattcgc ttaaagacgg cacaagctat ttctctctgt ctgccttgtt
    12301 cggcaattta gctaaccaca ccaacgagca agcgcattat gtggcaacag attttcagcc
    12361 caaatcccgt tttacggtct atcaatacag cctgtctcac gaacaagcgc tgccaaaatc
    12421 ctttgccttc aaccttggcg tgaacgggca gtttgcggat aaaaccctcg acagctcaca
    12481 aaaaatgtta ctgggcggtt tatacggcgt gcgtggtcat caagccggtg tcgcttcggt
    12541 ggatgagggg catttagtgc aaaccgaact caagcattat ttaccgctct tttccaaaag
    12601 cctgctgacc agctcggtct tctatgatta tggttgggga aaatactata aacacagcgg
    12661 atttttggcg cgtggtgtaa acaatagcgt gaaattacag agtatcggag cagggctttc
    12721 gctctctgaa gcaggcagtt atgccattaa cgccagtgtt gccaaaccgc tgggtaaaaa
    12781 aatcgagaat gcagataaac accaattctg gttctccgcc atcaaaacct tctaaggaga
    12841 caaactatgt ttaaacgtaa tgcaatttct ctctgcattt tgaccgcttg cagcggttta
    12901 gcctatgcca atacagcaga tttgccgcaa ggtgaaaggg tgcgtgtcgg gacggcaacg
    12961 attgagcgca caaccgataa aatgaccgtg aatcaatcca gcaataaagt acaaattgat
    13021 tggaacagct ttgatattgg taagaataaa gaagtggaat tcaaacagcc gacagagatg
    13081 gcggtggcat ataaccgtgt taccggcgga aacgccagtc aaattcaagg caagctgacc
    13141 gcaaacggca aagtgtattt agccaacccg aacggtgtac tcatcaccaa agatgcggaa
    13201 gtgaatgtgg gcggtttgtt agtgaccaca aaagatttag aaaaaatcag cgaaaacggc
    13261 acaaaagata aattcagtcg caaattagcg aaagaaggca aaattcttaa ccaaggtaaa
    13321 attacggcca aaggcgagcg ggcttttgtg gtattggtgg gcgacgatgt ggctaatgaa
    13381 ggggaaatta acgccaaaaa ttattaccac aaagaaacga aaaaagtcac cgaatgttat
    13441 gacgattctt ggagcttggt aaaacaatgc tacgattttg ataaagaaat cgtgaaaagt
    13501 accagtggag aagtgcattt atcctccgga gaaaatgtca cctttacttt aagcgaccgc
    13561 tatattgatg tggcgttaga cgataatacg gtcaatagca ttatcaaaaa tgacggggca
    13621 atcatcgcca atggtgacat taccctcact gccaaagggc gaaatcaagc cttagacagc
    13681 ttaattatca ataacggcgt attgcaagcc aataaggtgc aaaataaaaa cggtacgatc
    13741 attttatctg ccggtgaaac ccaattacac gaaaaaagcc aaattaaagg cgagaaagtg
    13801 agctttgccg aagcttctta ttacggtccg acagaagaca ttaaagtggt ttccaaaacc
    13861 ggctcaaaag tgaccgcacc tgtgatcgat ttcaaaggta aaaccgtgaa tattcaaggg
    13921 gaatttgggc gtgaagacag caccgatctc tataacgatg aactacaaat cctcaaaacc
    13981 acggtgaata ttgaagtccc gaatacggaa gatattcgca ttgcagatac cgacaacgga
    14041 ggtagcggtt cctttataca agcgggtgct ttagcctcat tacttgcaaa taacggacgg
    14101 gttaatgtac agggcaaagg ttttgatgtc tcaggcaagt tgaatgtgaa tgcctttaaa
    14161 caaacggatt ccgtgctgaa atttatcaat caggcgggca tcaatatcca caatgccgat
    14221 attcacgcaa acgggcgttt attctttgtg acaaacttgc cgaatgacac cgatttccaa
    14281 tcgaatatcc gcattaccga cagcaaaatc aacttaggca acggctcaat gggctttggt
    14341 cgcagtagca aacgttggga aatgcacgat gtggttcgac gtgccgatac ggaactgcgt
    14401 aaaaaattca atctggatat gaaaaacgtg gaattaaacc aagtggatga ttttgtggta
    14461 gcgggcggtt tccaacaagt taatttggat aacgtgaaag cccgtggcaa aaccaacttc
    14521 tatctggatt ccggcaactc ccgcatgttt gtcggtgagc agatttatga atatggcgta
    14581 accgatattg aaaaacgcac ccaattggcg aatttagacc agcgtagaaa acgttggaat
    14641 tcggataact atgatgagac cgatctcaac tgggaataca accaacgctt tgacggcttt
    14701 gcagcaaaac acaatcaccg cgcgccgatt gccgatacgg aaatcaatat tgccaatagt
    14761 gatatcagct tagataacgg ttttgtgcat ttaatggcag aaaaaatcaa tctggacgac
    14821 agcaaaatca atatcacctt caaccaagac aacagcttgg atgaaagtac ccaaatcaac
    14881 cgcttaggac taaacggcaa agtgtcgatg aaaaacagcc atattaacgt agtgggcgat
    14941 gaaaaagacg gtatctcacc ggctcgccat tatgccacga tgttcttagt gggggagctg
    15001 cttggtgaaa agagttctat tttcctcaaa tcccaccaag gtgcagtatt gagaaccgac
    15061 agcaatgtta caattgccgg taaaaacagc aaagacgacc tcaaaattac cgccattacc
    15121 accggtaaaa aaatgggcaa tgaaatcatc ggaccggacg gcttgccaac ctcggaagat
    15181 aacgatgcca acgccagcaa caccgccttt gccatcggct atgaacctaa cgctacggct
    15241 atcgtcgaaa atgcaagcat taccgcatta gcaccaaacg gcggcttggc atacaccggc
    15301 acgtctaaaa cccaaattga cgcgaaggat aatgctacct ttaccttctt tgaaaaacct
    15361 cgagccggct atgacaaatt gcttggcgac atcaaaggta accccgataa attaacccca
    15421 cgcgatttcg cccgtttata cgacaacatt aaaggcatca aagccagcag cctatccgaa
    15481 caacagcttg gcctagcaga caccgcgaag aaaaccagcg aacacacctt agcaaacagc
    15541 ctagacgtag aaaatttggt ttcagtgaca gtgtgtgatg agcagaataa gtgtgaggag
    15601 cgtatgttag gtaacaaaaa taccaatgct aaagttattg tcggagatat caaatttgag
    15661 tagcgttgaa gaaagtggta gaagctcaga cttgatctga taaagcacta taaaaagtga
    15721 gagtttcccg tttagaatat gagtgtcaaa attcaatcta aacaaaaagg aaactctcat
    15781 gttttattac ttacaatccc ctcattaaac acaagaccgg tttattaaat ttagcagaag
    15841 aaccgggcaa tatctctcaa gcctgcaatg tggtgggtat gagcctagat acattctatt
    15901 gctatcaaca agcggttatt tttggcaact aatttgcaaa aaaacaataa aatccgaccg
    15961 cttgtagagg gttaatccgc ccttagtgaa atttcaccga tgccgaaata gcggaggttg
    16021 tcgccctgtt ttagaatgag ttcgccctgc tcgttaatgc cttgcgaaat gccgtggatt
    16081 tcttcggctt cggtaatgag cttaaccgct ttatggcgga aaaggtcgaa actttgccag
    16141 cgttcggcat aatgagcgaa gccgacaagc ggataaattt tgagattttt ttgcaattca
    16201 taggctaaac ggcaaaccaa ttcgttgcgg ttgaaatgat attgcgataa atctgcccac
    16261 gcttgcgtca caatattttc atccactttt gccattccta ggttcagccc aatgccgata
    16321 accacatcta aaccattgcg attggcttgg gtttccaaca aaatgccccc catttttttg
    16381 ccttggtaat aaatgtcatt cggccattta atttgaatat cttttacatt ttgaacagta
    16441 aggctttccg caatgatcaa ggctaccact aaacttaagg gcggtaaatc tgccgcctgc
    16501 tccatcgggt aatgccataa aatcgagaaa tagagatttt cactctcggg cgaataccaa
    16561 gttcgacctc gtctgccacg tccggcagtt tgtttttcag cgaggcaaac cgtgccgttt
    16621 tccaaacgtt ggtgatgagt gagcaaatat tcattggttg aatcaatttc atcgaacaca
    16681 acggcttgcc cgcaaattaa agcattttgg atttgagctt ggttaagttt cattatttcc
    16741 ccacttagcg agtgattttt tcgctatcga cctcaccgtt tttaccgata aaacgcactt
    16801 caggctgaat ttctacccca aatttttctt tcactctctg gcgaacggtt ttggctagag
    16861 ccaagacatc ttgccctgtt gcattttctt tattaatcag cactaaggct tgctgggtat
    16921 gtaccgccgc tccgccaatt tgtaagtctt tcagcccggt ttggtcaatt aaccaacctg
    16981 cggctaattt taccgttcca tcagcttgag ggtagtgagg aatggctggg aatttggctt
    17041 gtattggtgc aaattgttcg tttgaaatca ccggattttt aaaaaagctg ccggcattgc
    17101 caaattcgtc agggtttggc aatttggagg agcgaaccgc acagacttca tcaaaaatct
    17161 gtattggcgt aacggtttcc ggattgagtt gggctaatga tccgtaactt agcaccggtt
    17221 tccacgcttt ggctaacttt aagcctaccg agataatcgc aaattcatca cggtattggt
    17281 gtttaaacac actttcacga tagccaaatt cgcactcgga tttggatagc ttaaagagtt
    17341 ctccggaacg taaatttaac acttccacga aatcacatac ctgttcaaat tcaaccccat
    17401 aagctcctat attttgaatg ggagcagagc tggcgacacc cggaattaac gccagatttt
    17461 caatgccggc aatattgtgt gccaacgtcc atttaaccaa ttcgtgccag ttttccccac
    17521 cttgaacgtg caaatagtgg aaatgttcgt cttcgtggtg cgtaatccct ttgagtttat
    17581 ttactaacac cacaccgtca aaatcctcta aaaacaaaac gttagagcct tgcccgagaa
    17641 tcaagattgg cagttgagcg ttaaaggctt tttgccattc gctcaatagc tgttcgactg
    17701 tggtaaattc aataatttgg gtcgcttttg caggcaaatg gaaagtgtga aaaggggtta
    17761 agctatgttt catcatcaaa ttagttagtt aagaagtgga aataacaagc ggtgatattt
    17821 ttacaaaatt ttgcaattaa gattttgggc aggcacagga tctgccccta cattcagaat
    17881 taccttgccc catataccac aatggttttg ccgtgagcag aaattaagcc ttcgtcttcc
    17941 aacattttta taatgcgtcc aacggtttca cgggaacaac cgaccatttg cccgatttct
    18001 tggcgggtaa ttttgatctg cataccttcc gggtgagtca ttgcatccgg cattttagct
    18061 aagttgagca aggtttgagc aatgcgaccg gcaacgtcta aaaaggcaag attaccgact
    18121 tggcgtgaag tttgacgtaa acggcgagcc atttgtgccg ataaatacat taaaatatcg
    18181 gggtttaaat ggactagttg tttgaatttt ttataggaaa tttccgcaat ttcacaagga
    18241 cctttagtgc ggacgtaagc ggtacgttgt tggacttttt cttcaaataa acttaattca
    18301 ccgacaaact cacctgtgcc taagttagtt aagagcatct ctttggtttc atcatctttg
    18361 atgtaaaccg acactgagcc attcacgatg tagaaaagtg attctgcatc ttcaccggcg
    18421 tgaatgagtg tatatttcgc cggataacga tggatatgac aatgggttaa aaaccactcc
    18481 accgcagggt cgtgaataga gggcggagga gttacatttt ccagaggagc tgttgaaagt
    18541 gtcatatctt gcatagtatt tcctataact cttatactag gttaaatttt tagaatttta
    18601 acacgaaatt aaaggttagc ctaaaaaaga ttttttgtct ttaatatcaa ggctttcgtg
    18661 taattccgac caaacaatca ccactttatc tgccttaagt tgtgtgagta atcgttctct
    18721 tttttctgcc agagaaagtt ccctttcccc gtagtctgtg ccttctcgta aaatgaagga
    18781 atctaaaata ttatgtaagg ttgattcttc gagttcttgc caaggtataa tcataattaa
    18841 tcaaataaag gcttaataaa tgcccactgt ttttcaaaat gttggtgttg gttatagctg
    18901 aaattagaac gaaccaagcg taaaaattgc ccttcgcaga aattcactaa ataaccggct
    18961 aaggctcttt cgtcttcaaa gctcttgcgt tcacgcagtt tactaagttg caaaatattg
    19021 gcaaattgta actccaagtt atcaaagaat tttgccactc gagctttgag caactcctct
    19081 tcaaacatca aggcgtgtcc ggtcaggatg cgggtaacgc ccgggttttt gcgagcaaat
    19141 tctaaaatca catataaaat tgctcgcacc gaattggcac tgctgtcttg gcgtttattg
    19201 gcgtgaatat agctggtgag ggtctgctcg attttctcga ttaacgcttc aaacatcttg
    19261 gttttacttg ggaaatagcg atacaacgcc ccctccgaca cccccaccgc agcggctaaa
    19321 cgctcggtag tgatacgctg cattccctct tcagaattta acaagctgat taacacttcc
    19381 aacacttgtt ggcggcgttc caccactgat tttttcggca ttttaatttt aggttctgtc
    19441 attgccaatc ctattattgc ttacctgaat gcccaaaacc gccttcgcca cggtcggtct
    19501 gctcaaactc ttgcacaatg ttaaaacttg cctgaaccac cggcacaaag actaactgag
    19561 caatacggtc gcccacgttc acggtaaaat cagcttggct acggttccaa agcgacactt
    19621 tcagctcgcc ttggtaatcg ctatcgatca agccgactaa gttgcctagc acgatcccgt
    19681 ttttatgccc taaacctgat cttggtaaga tcaccgctgc caaattcgga tcggcgatat
    19741 aaattgaaat ccccgttggg atcaacaccg tttcacccgc ttttaccgtc agcggctcgt
    19801 tgagcatcgc ccgtagatcc aagcctgccg agccttcggt cgcatacgca ggtaatggaa
    19861 attcattgcc gatacggcta tctaaaattt ttaaatcaat ttgtttcatt ctttttcctt
    19921 tttgtaaatt tttaaaacta tattattcag ttataaaagg ttttaattgt atcgttccaa
    19981 gtggaagttc agtcaatatt tcccagcttg tgttgtggta aaatcgaaat aaacttgcaa
    20041 cgttttcaac gtagcttgaa ttaaatttac cttctaatgg ctttattcct ccagtaaaat
    20101 gaattatatg tggaatataa tttggcgaaa ttttttgctg ggcaatatca tcta
//
LOCUS       DANLVT010000036        20128 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.036, whole genome shotgun sequence.
ACCESSION   DANLVT010000036 DANLVT010000000
VERSION     DANLVT010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20128)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20128)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20128
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.036"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            28..501
                     /gene="nrdG"
                     /locus_tag="PXC99_001101"
     CDS             28..501
                     /gene="nrdG"
                     /locus_tag="PXC99_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase
                     activating protein"
                     /protein_id="HDL5417562.1"
                     /translation="MENLRFSSEQIVWQEVPNETSLAFLITGCPLGCKGCHSADSWKA
                     CLGKELSSEYLSERLKRYQGLISCVLFMGGEWEAEKLLPLLQLAKNQGLNTCLYSGLE
                     QHEIAETLLHELTYLKTGRWIAERGGLESLTTNQRFTDLRNNQNLNHLFIRGASI"
     gene            498..2279
                     /gene="nrdD"
                     /locus_tag="PXC99_001102"
     CDS             498..2279
                     /gene="nrdD"
                     /locus_tag="PXC99_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HDL5417563.1"
                     /translation="MIRLQPTQLDGKLHFINQYIQAKNAADGSKMDANANVTQKNIAT
                     MEQELMKDFFVQINRAKVSEKIAKIFGKETACEYLRQIEAHEIYVHDETSLKPYCVSV
                     TMYPFLRDGLTKLGGESKAPKHLASFCGSFINFVFAVSSQFAGAVATVEFLTYFDYFA
                     RKDYGDNYLQTHRSDIENHLQQVVYSINQPAAARGYQSVFWNISVYDKFYFEAMFSRF
                     VFPDFEKPNWETTSKLQLFFMQWFNKERSKAILTFPVVTAAMLTEKGKCKDDEFANQM
                     AKELSQGNSFFIYQSDNPDSLASCCRLRNEISDHSFSYSLGAGGVATGSINVITINMN
                     RLVQDNRDLSEEVSKIHKYQYAYRKLMEEYLAAGMLPVYDAGFISLHKQFLTIGINGM
                     AEAAESQGLTVGYNPDYIDFVQSRLKIIFQANQAAGEKYGVKFNTEFVPAENLGVKNA
                     KWDKEDGYFVPRDCYNSYFYVVEDEEINALDKFLLHGRELIEWLDGGSALHLNLDEAL
                     TQTGYRSLLDTAAKTGCNYFCINVKITICNECSHIDKRTLHSCSKCGSDNIDYGTRVI
                     GYLKRVSAFSSARQKEHSLRFYHREAA"
     regulatory      2336..2432
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            2489..3307
                     /gene="thiM"
                     /locus_tag="PXC99_001103"
     CDS             2489..3307
                     /gene="thiM"
                     /locus_tag="PXC99_001103"
                     /EC_number="2.7.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole kinase"
                     /protein_id="HDL5417564.1"
                     /translation="MTTSLPYHSHYLQKIRQNRPLVHNITNIVAANFSANGLLALGAS
                     PIMAAAIEEMESVPALSNAVVINIGTLIGKEVEAMELAGKTANRLGIPLILDPVGVGA
                     TPFRRQTVETLVDQIHFTAIRGNAGELATLAGVEWQAKGVDAGEGSHNVVEIAQQIAK
                     RYQTLVAISGETDVVSSGSHTALLHNGSPMFPKITASGCLLSAVCGAFLAVADKEHYF
                     NALIEACAAYAVAGEVAAQALKPTQYGQFAVNLLDTLGALTPETVEQYVRVEYV"
     gene            3300..4613
                     /locus_tag="PXC99_001104"
     CDS             3300..4613
                     /locus_tag="PXC99_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5417565.1"
                     /translation="MSKTHSNPTKVAVASMVGTAIEYFDNYIYTMAAVLVFNVQFFNS
                     DDPVSNQLMSLSVLALAFFTRPMGSILFGHFGDKYGRKQTLIASLLLMGLSTVAIGLL
                     PNYAAIGIWATVLLCLCRIGQGLGLGGEWGGAALVATEHAPKHKRAFFGIFPQMGAPI
                     GLLLANGAFYLVNLIYGEQTFLDWAWRIPFVASIVMIAIGLYIRIKISESPIFLKAEQ
                     QGKNRHTPLKTLFSQHLKPFMIGVLIATAGYVLFYILVAFTPIFVKSPVAVSQAGHAT
                     GLGLPVNLYTQYLLITSVIFGIAIFFSGIYSDKIGRRLLLLLATGATVVYGLTMPFFL
                     ENGTPTSIFIFLTIGMILIGLSFGPMAVILPELFPTEVRYTGASLAYTAAGILGASVF
                     TIIAVKINENFGLFGVGGYLSVASLLSFWALWQVHETKDLELEEI"
     regulatory      4749..4845
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            4913..6442
                     /gene="thiE"
                     /locus_tag="PXC99_001105"
     CDS             4913..6442
                     /gene="thiE"
                     /locus_tag="PXC99_001105"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HDL5417566.1"
                     /translation="MSNYSNSPYQPNVIWTVAGSDSCAGAGLQTDLHTFHDFNLVGCS
                     VVTSVTAQHPHGVLCVTPVDDHTFRQQFEALLVQGYPNAIKIGLLCSQAQVEILCEYI
                     QKIRAESSHYCYVVYDPVAVASSGQALSDSILLQIVQQKLYPLVDLITPNGTELALLS
                     DTEIQTFGDVKTASHKLFAQGIKAVLAKGGHFEWLGETVRDYLLTANEIYAFSHARQQ
                     SVNTHGTGCTYASAVGAMLATGFDLADAVTVATAYLQKGLSEKQGRGQTALSSLCHTG
                     YPDDIAFFPQTELISAPLKLPKEPFAPTEYQLGLYPVVDSVKWLERLILVGVKTLQIR
                     IKNRPLAEIEQEIAHSVALAKQHNVRLFVNDYWQLAMKYQAYGVHLGQEDLATADLNA
                     IQQSGLRLGVSTHCYFEIMRALAVKPSYIAFGHVFPTQTKVMPSQPQGLTNLAKYVAL
                     VAPLNIPTVAIGGINEQSIENVMHTGVGSAAVVSAVTQAKDWQQAVKNLAKFANGGRN
                     E"
     gene            6435..7607
                     /gene="cytX"
                     /locus_tag="PXC99_001106"
     CDS             6435..7607
                     /gene="cytX"
                     /locus_tag="PXC99_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydroxymethylpyrimidine transporter
                     CytX"
                     /protein_id="HDL5417567.1"
                     /translation="MNRTLSTLNSGLIWAGAGISASAIVVGTWIAPLGWQQGLLAIVL
                     GHLLGGILFFAAGLIGAKTGKNAMQTVQISFGRGSVFFSLANVLQLVGWTAIMIYTGA
                     EISNALSLALWEYSAFSLWAIVLGLLIVLWLFTGSNQVGKFKLVTLIAMFLLTLWLSI
                     KVLNGQENFPVSGEMPFSTAVELATIMPLSWLPLVSDYTAKAKKPFAATLSATIGYLI
                     TSAWMYALGLGMVLFTGQTEIAPMLLMTGMSLIGIMVMILSTVTTTFLDAYSAGVSAG
                     NITAKFKETPTAILVTIIGTLLAISLPVTQYENFLLLIGSVFAPMIAVQIADFFVLKR
                     HQAQPNVDWVAAGLWLVGFVLYHLLSYHQVHLLLGLTIPVMLVIFLSTIFVRRFTK"
     gene            7646..7855
                     /locus_tag="PXC99_001107"
     CDS             7646..7855
                     /locus_tag="PXC99_001107"
                     /inference="COORDINATES: protein motif:HMM:NF015737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL5417568.1"
                     /translation="MESLVLNNDWVVTPQAQLAYHTINGKADEERLNLLVARAGVRVA
                     KGFALNNGWNLQPYAEVNGIAEKGQ"
     gene            7863..8039
                     /locus_tag="PXC99_001108"
     CDS             7863..8039
                     /locus_tag="PXC99_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL5417569.1"
                     /translation="MQVNQYQFGVAENKGRVQGSLGLSAGNGNHRLGLEASVASGKKL
                     KQPFNVLVNYRYQW"
     gene            complement(8080..9936)
                     /gene="sppA"
                     /locus_tag="PXC99_001109"
     CDS             complement(8080..9936)
                     /gene="sppA"
                     /locus_tag="PXC99_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HDL5417570.1"
                     /translation="MLTILKAFYRIFRCIRECVINLFFILFILLLVPVVAFISSSGST
                     QKPVFNQGALRLNLDGYLADNREEFTDFYRLVQSELGSSEPFKISTFDVVQAISHAKN
                     DPKITGLVLDLQKLQSADFSSLDFIGNEINNFKQSGKPVIAVGEDYSQKQYYLASFAD
                     EIYLNKVGAVDLKGLNYSNTYFKTLLDKIEAEPHIFRVGTYKSAVEPFMRDDMSEEAK
                     QNARGWLNGTWQQTVATLAQNRNIEPQALDLSPANYIEKYKQAKGDDAQLALNQKWVS
                     QLVSSQESRDKLIAQFGKNSEGSYNQIEFLDYMTELNDRFAEVNAPKIAVVNVEGAIA
                     GGESDEMNVGSETLVKLLQQARDDKNVEGLILRINSPGGSAVASELIRQEVEAFQQAG
                     KPVVASMGGMAASGGYWIAATSDKIIASPNTLTGSIGIFGLAVTFEKTAKNLGVSEDG
                     IATSALAQQAGLKSLPQEQAEVLQIGIENGYDRFLELVSRGRKMPKEVVDKVAQGQVW
                     LGTDALKHGLVDELGNFNVAYNALSELINQKREAENQPKVEQFGLQWFAEQDDSLFGT
                     LARDFKAQLQFSVANWLDLPLLKQPQQQLETLSRFNDPKQMYLYCLNCGKID"
     gene            10039..10602
                     /locus_tag="PXC99_001110"
     CDS             10039..10602
                     /locus_tag="PXC99_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HDL5417571.1"
                     /translation="MQILDLLHHRRSNKKFGDKAPNAEQLEQILKAGLRVPDHGRLKP
                     YRFVVIEKSGMPQFGECLKSAVAEFDMGEERLKKAEKLANQAPMIIGVVATLDDSIAK
                     VPSWEQMITAGCATYAIQLAANAQGFDTVWITNKWINGSALRSAFGCQESDKIIALIM
                     LGSPAEGEQIALAPESESLEGFVRYLK"
     gene            complement(10673..12997)
                     /locus_tag="PXC99_001111"
     CDS             complement(10673..12997)
                     /locus_tag="PXC99_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HDL5417572.1"
                     /translation="MTDLNLKISQIIAGELNVGSHQILAAITLLGEGNTIPFIARYRK
                     EVTGGLDDTQLRHFETRLIYLREMDERRQTILKSIEEQGKLTDELKAKILSSESKTEL
                     EDLYLPYKPKRRTRGQIAIEAGLEPLADSLWNDPKQDPETLAANFVDAEKGVADTKAA
                     LDGARYILMERFSEDAELLAKLRQYLTAYATLESKVIDGKEEEGEKFRDYFAHSEPFN
                     SVPSHRALAMFRGRNEGVLSLSLNADPTAEEGTKSSHCEEIIREHLGVIFNNQPADKW
                     REQVIAWTWKIKAALHLETELMATLCEKAEEEAIDVFARNLSALLMAAPAGARNTMGL
                     DPGLRTGVKVAVVDNTGKLLDTATIYPHTGREAEAQLAIFSLIKQHNVELIAIGNGTA
                     SRETERFAKAVIKEIKENKPQTVVVSEAGASVYSASEFAANEFPNLDVSLRGAVSIAR
                     RLQDPLAELVKIEPKAIGVGQYQHDVNQSQLARKLDAVVEDCVNAVGVDLNTASAPLL
                     ARVAGMTKTLAQNIVAFRDENGRFTSRSELKKVPRLGPKAFEQCAGFMRIIGGKNALD
                     ASSVHPEAYPVVEKILQATTSTLAELMGNNSKIHSLNAKDFVDEQFGLPTVNDIFKEL
                     EKPGRDPRGEFKTAVFMDGVEEITDLKAGMILEGTVTNVANFGAFVDIGVHQDGLVHI
                     SMLSNSFVEDPHTVVKAGDVVKVKVLEVDAARKRIALTMRLDDKPTDKKEPTSGRNSA
                     EICKNTQKNDRLQSNNRNAFGNNAFADALKGWKK"
     gene            complement(12997..13551)
                     /gene="pilW"
                     /locus_tag="PXC99_001112"
     CDS             complement(12997..13551)
                     /gene="pilW"
                     /locus_tag="PXC99_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis/stability protein PilW"
                     /protein_id="HDL5417573.1"
                     /translation="MFAKFFPKMTACILIFLLAACSSLPPSSSEVEFNRSEAVKARIN
                     LALAYLEQNDFPKAKQNIDKALAHDEKDYLPYSVLAYYYQQTGDAENAEKAYQTALKL
                     SQNRPDVLNNYGTFLCKQGQFQQAYQQFEQAVKSKAPYYHQADSLENMVLCAKKEPNL
                     QKIAETLTELEKLDKPRANLLKEN"
     gene            13771..14022
                     /locus_tag="PXC99_001113"
     CDS             13771..14022
                     /locus_tag="PXC99_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5417574.1"
                     /translation="MKIVVFQRKALKQLRKIPTGAEIRRKCDDLAYFPYCANIKALTN
                     HQYDYRFRVGNYRIFFNIEGETMNIVSIEEVKKRDERTY"
     gene            14006..14353
                     /locus_tag="PXC99_001114"
     CDS             14006..14353
                     /locus_tag="PXC99_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5417575.1"
                     /translation="MKELTNIQYLNNEEGKPAFAVLPIATLEWLKQKANIKTAIETGI
                     PSAVAGIALDNNYSALRAWREYLGLTQEEVAQRLGISQSAYSQHENAKNLRKTTRIKI
                     AYALGLNEEQLDF"
     gene            complement(14394..15554)
                     /gene="trmG/rlmN"
                     /locus_tag="PXC99_001115"
     CDS             complement(14394..15554)
                     /gene="trmG/rlmN"
                     /locus_tag="PXC99_001115"
                     /EC_number="2.1.1.-"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA
                     large subunit methyltransferase RlmN"
                     /protein_id="HDL5417576.1"
                     /translation="MSELITNAGCGSAEQPKEKINLLNLNRQEMRELFAEMGEKPFRA
                     DQLMKWIYHFGEENFDNMSNINKVLREKLKRIAEIKAPEVAVEQRSADGTIKWAMQVG
                     DQQIETVYIPEDDRATLCVSSQVGCALACTFCSTAQQGFNRNLSVAEIIGQVWRASKI
                     IGNFGVTGVRPITNVVMMGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVV
                     PALDKMREQIDVALAISLHAPNDELRDELVPINKKYNIKMLMDSVNKYREVSNANHGK
                     VTIEYVMLDHVNDSTNHAHQLAEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQK
                     TLMEYGFTVTVRKTRGDDIDAACGQLAGDVIDRTKRTLEKRKFGQGIAVKTH"
     gene            15814..16710
                     /locus_tag="PXC99_001116"
     CDS             15814..16710
                     /locus_tag="PXC99_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding protein"
                     /protein_id="HDL5417577.1"
                     /translation="MKLSTIKKALVLTFGLSAAMAMAEPFKVVTTFTVIQDIAQNVAG
                     DKATVESITKPGAEIHDYQPTPKDIVKAQKADLVLWNGMNLERWFERFFENVKGKPAV
                     VVTEGITPMPITEGEYKNLPNPHAWMSTDNALIYIENIRAALVKYDPQNADTYNANAK
                     AYAEKVKGIAEPLRQRLAFIPEQQRWLVTSEGAFSYLAKDYNLKELYLWAINAEEQGS
                     PKQVKKVIDGVKANKIPVVFSESTVSDKPAKQVAKETGALYGGVIYVDSLSEKDGPVP
                     TYLDLLKVTIGTIVEGFERSKK"
     gene            16723..17466
                     /locus_tag="PXC99_001117"
     CDS             16723..17466
                     /locus_tag="PXC99_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HDL5417578.1"
                     /translation="MTTVSASISVENLSVRYNNGHIALQDVSFHLENGTICALIGVNG
                     GGKSTLFKSLMGLVKPLTGSVKLSQLPIAKALKQNLVSYVPQSEEVDWQFPVSVYDVV
                     MMGRYGYMNFLRRPSQTDKLKVEQAMQRLDVLHLKDRQIGELSGGQKKRVFLARALAQ
                     ESKIILLDEPFTGVDVKTENAIVELLKQLKNEGHLILVSTHNLASVPSFCDQVLMVNR
                     TLLAKGKTEEIFNNQNLERVFGGLLHYQK"
     gene            complement(17523..18332)
                     /locus_tag="PXC99_001118"
     CDS             complement(17523..18332)
                     /locus_tag="PXC99_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDL5417579.1"
                     /translation="MLNWILEPLQFEFMQIALITAILVAGVSAVLSCYLVLKGWSLMG
                     DAISHAVLPGVVISSLAGLPLSIGAFFSGLGCALSVGYLKENSRLKEDTVMGIVFSGM
                     FAFGILLFTAFNTGEHLTHILFGNLLGVTKSDLLQTLLISLFTFVVMVAKRKDFLLYC
                     FDVNQAKVAGLPVRLLHYGLLSLLALTIISAMQVVGVILVVAMLITPGITAYLLTKRF
                     DSMLLIALGVAIFSSVFGTLLSYHIDAATGPTIILVQAAIFFLSFAYSKIH"
     gene            complement(18325..19185)
                     /locus_tag="PXC99_001119"
     CDS             complement(18325..19185)
                     /locus_tag="PXC99_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDL5417580.1"
                     /translation="MLDLLLEPFTYNYMQKAIFVSMGVGLVCAFLSAFLMLKGWSLIG
                     DALSHAVVPGVAIAYALKLPYAFGAFFSGILAALSILWVKSLTKIKEDAVIGFIFTTF
                     FALGMFIVSLNPTSVDVNSIVMGNILGIADDDLWQVVLIIAISLLGLILFWKDLLLVF
                     FDEHHALSVGLSPLRYKVIFFTLLSACVVVALQTVGAILVIAMVVTPGATAYLLTDRF
                     PRLVLIAMLIGTLTSGIGAYLSYFLDGATGAVIVCLQTLIFLFAFCFAPKYGLITQKR
                     KLHRVEVQNA"
     gene            complement(19259..20044)
                     /locus_tag="PXC99_001120"
     CDS             complement(19259..20044)
                     /locus_tag="PXC99_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HDL5417581.1"
                     /translation="MMKKITILGLGWLGLPLAEALQNKGWRVAGTKRTVGELAIECYP
                     LDLNALAVTSEIEQLLAADALVIALPLSQIRPENYGCGIQTLVSLAIEKGLKHLVFTS
                     STSVLPMKSGVFDENAVVDSANLLVKMENWLLSQPIHCDILRLAGLVGKKRHPVFYLA
                     GKQNLSGAGQPVNLVHLEDCIAAISLLLEQPNGQRIFHLCAEQHPSRKDYYSEMAKRF
                     GLADLHFSEENQPLVRLIKADKICQELGFRYYYPDPYQFKVDI"
BASE COUNT         5775 a         4505 c         4231 g         5617 t
ORIGIN      
        1 acaatatatt gtgttaatga attagtaatg gaaaatctca gattcagctc ggaacaaatt
       61 gtttggcaag aagtgccgaa tgagacctca cttgcttttc tgattacagg ctgcccgctt
      121 ggctgtaaag gttgccatag tgcggatagc tggaaagcct gtcttgggaa agagcttagc
      181 agtgaatatc tctctgaacg cctaaaacgc taccaaggct taattagctg cgtattgttt
      241 atgggcggag aatgggaagc agaaaaatta ctgccgctgt tgcaactggc aaaaaaccag
      301 gggctaaaca cctgtcttta tagtggtttg gagcagcacg aaatcgccga gactttatta
      361 cacgagctaa cctacttaaa aaccgggcgt tggattgccg aacgaggagg attggaaagt
      421 ttaaccacca accaacgctt tactgattta cgcaataacc aaaatcttaa ccatcttttt
      481 attcgaggag cttcaatatg attcgcttac aaccgacaca attagacgga aaactacatt
      541 tcattaacca atatattcaa gccaaaaatg ccgcagacgg ttcaaaaatg gacgccaacg
      601 ctaacgtcac gcaaaaaaac atagcgacaa tggaacagga gctaatgaaa gatttttttg
      661 tgcaaatcaa ccgagcaaaa gtgagtgaaa aaattgcaaa aatttttgga aaagaaaccg
      721 cttgtgaata tttacgtcaa atcgaagcac acgaaattta cgtacacgat gaaaccagcc
      781 taaaacccta ctgcgtttca gtcactatgt accctttctt gcgtgatggt ttgactaaac
      841 tcggcggcga atccaaagcc ccgaaacatt tagcctcatt ctgcggttct tttatcaatt
      901 ttgtctttgc agtcagttct cagtttgccg gtgcagtcgc cacggttgaa tttctgacct
      961 attttgacta ttttgcccgc aaagattacg gcgataatta cttacagact catcgttcag
     1021 atattgaaaa ccacctgcag caggttgtgt atagcatcaa ccaaccggca gccgctcgtg
     1081 gttatcaaag cgtcttttgg aatatttcag tgtatgacaa attctatttt gaagcgatgt
     1141 ttagccgttt tgtttttcct gattttgaga aaccaaattg ggaaaccact tcaaaattac
     1201 aacttttctt tatgcaatgg ttcaataaag agcgaagcaa agcgattctc actttccctg
     1261 ttgtgaccgc agcaatgctt accgaaaagg gcaaatgtaa agatgacgag tttgccaatc
     1321 aaatggcaaa agagctatct caaggcaatt cattctttat ttatcaatca gataatccgg
     1381 attcccttgc ttcttgctgc cgcttgagaa atgaaatcag cgatcatagc ttctcctatt
     1441 cattaggggc tggaggtgtt gcgacaggtt caatcaatgt aattactatt aatatgaacc
     1501 gtttggtgca agataaccgt gatttaagcg aagaagtcag caagatccat aaatatcaat
     1561 acgcttaccg caaactgatg gaagagtatt tagctgccgg tatgttgccg gtttacgatg
     1621 ccggttttat ttcactgcat aaacaattcc tgactattgg cattaacgga atggcagaag
     1681 ctgctgaatc acaaggttta accgtaggtt acaatccaga ctatattgat tttgtgcaat
     1741 ctcggttaaa aattattttc caagctaacc aagcagccgg tgaaaagtat ggggtaaaat
     1801 ttaataccga atttgtgcct gctgaaaatt taggggtcaa aaacgccaaa tgggacaaag
     1861 aggacggcta tttcgtacca cgagattgct acaattccta tttctatgtg gtagaagatg
     1921 aagaaattaa tgctttggat aaattcttac tgcacggcag agagctgatt gaatggctgg
     1981 acggaggctc cgctctacac ttgaatttag acgaagcctt aacccaaacc ggatatcgct
     2041 ccttgctgga taccgccgct aaaaccggct gcaattattt ttgtattaac gttaaaatca
     2101 cgatttgcaa cgaatgtagc cacatcgaca aacgcacgtt gcacagttgt agcaaatgtg
     2161 gctccgataa tattgattac ggcactcggg taatcggcta tttaaaacga gtctccgcct
     2221 ttagttccgc ccgccaaaaa gagcacagct tgcgtttcta tcaccgagaa gcagcttaat
     2281 tgaaaactgc agttgtagcc ctttacaacc gcttttttag tgattatatt aaagcctcat
     2341 ttagtcgggg tgcttgccta agggcaagct gagaaatacc cgttgaacct gatgcagtta
     2401 gcactgacgt aggaaactaa aggcgtaaac ccatctattc cccgttggtg ttggtgcgtt
     2461 gtttttcaat catattaagg aataaacgat gaccacatca ctcccctatc actcgcatta
     2521 tttgcaaaaa attcgacaaa atcgaccgct tgttcacaac attaccaaca ttgttgccgc
     2581 taatttttct gccaacggct tattggctct tggtgcttct cccattatgg cagctgctat
     2641 tgaggagatg gaatccgtgc cggcactcag taacgccgtg gtgattaata tcggcacgct
     2701 tatcggcaaa gaagtagaag caatggagct tgctggcaaa accgccaacc gtttaggtat
     2761 tccgctcatt cttgaccctg tcggcgttgg agcaacacct ttccgccgtc aaacagttga
     2821 aaccttagtc gaccaaattc acttcaccgc cattcgtgga aatgcggggg aactagctac
     2881 cctcgccggt gtagaatggc aagccaaagg cgttgatgcc ggcgaaggct cgcataatgt
     2941 ggttgaaatc gcccaacaga ttgccaaacg ttaccaaacc ttagtcgcaa tcagtggtga
     3001 aaccgatgtg gtaagctctg gctcacacac agctttattg cacaacggca gcccgatgtt
     3061 ccccaaaatt accgcttcag gctgtttatt aagtgcggta tgcggggcat tcttagccgt
     3121 tgccgacaaa gagcactatt tcaacgcact tattgaggct tgcgccgctt atgccgttgc
     3181 aggcgaagtg gctgctcaag cactcaaacc aactcaatac gggcaatttg ccgtcaatct
     3241 gctggatacc cttggggcat taacgcctga aaccgttgag caatatgtga gggttgaata
     3301 tgtctaaaac tcactcaaac ccaactaaag tggcggttgc ctcaatggtc ggcacggcga
     3361 ttgaatattt tgataactac atctacacga tggcagcagt gctggtgttt aatgtgcagt
     3421 tttttaatag cgatgatccg gtttccaacc aattaatgtc gctttccgta ctagctcttg
     3481 cctttttcac ccgcccgatg gggtcgattt tattcgggca tttcggcgat aaatacggac
     3541 gcaaacaaac tctgattgcc tcgctcttat taatgggctt atctaccgta gcaatcgggc
     3601 ttttgcctaa ttatgccgcc attggcattt gggcaaccgt gttactctgc ctctgtagaa
     3661 tcggacaagg tttaggctta ggcggcgaat ggggcggagc tgctctcgtt gccactgaac
     3721 acgccccgaa acacaagcgg gcattttttg gtatttttcc gcaaatgggc gccccaatcg
     3781 gcttgctgtt ggcaaacgga gcgttctact tggtgaattt aatttacggt gaacaaacct
     3841 tcttggattg ggcgtggcga attccgtttg tcgcttctat tgtgatgatc gccattgggc
     3901 tttatatccg aattaagatc agcgaaagcc cgattttcct taaagcggaa caacaaggta
     3961 aaaaccgcca taccccgctt aaaactttgt ttagccaaca cctcaagcct tttatgatcg
     4021 gcgtgctgat tgccaccgcc ggctatgtgt tgttctacat tttagttgct ttcaccccga
     4081 ttttcgtcaa aagcccggtg gcagtttctc aagcaggaca cgctacaggc ttaggtttac
     4141 cggtaaatct ctacacccaa tatttgctga ttacctccgt gattttcggc attgcgattt
     4201 tcttctccgg catttattca gacaaaatcg gacgccgttt actgctgtta cttgccacag
     4261 gagcaaccgt agtttacggc ttaacaatgc cgtttttcct cgaaaacggc acaccgactt
     4321 cgatctttat tttcctcacc attggaatga tcttaatcgg cttaagcttc ggcccgatgg
     4381 cagtaattct acccgaactc ttcccaacag aagtacgtta cacaggggct tcgcttgcct
     4441 acaccgctgc cggtatttta ggagctagcg tgttcactat tattgcggtc aaaatcaatg
     4501 aaaatttcgg cttattcggt gtaggcggct atttatcggt tgcctcatta ctgagcttct
     4561 gggcattgtg gcaagtccac gaaaccaaag atttggaatt agaggagata taaaaaacca
     4621 ctcacttaac gacggggcaa gttaccacct tgccccaaga tgagggaatg caaatttccc
     4681 tctaatagac ttcacaacgg atattttgca tttttttata aaaaataacc gcttgtaagc
     4741 tatactaaaa acgcttgtcg gagtgccgta aggctgagat cgcaacagcg agatccgtgg
     4801 aacctgtagg ttagtacctg cgtagggaac aagttttacc caaattcaga ttttgggatc
     4861 attaccacat ctctggcaag caaaacccta agcatattat gaggattttg cgatgtctaa
     4921 ttattcaaac tctccatacc aacctaacgt catttggacg gttgccggct cagattcctg
     4981 tgccggtgcc ggtctgcaaa ccgatttaca tacctttcac gattttaacc tagtgggttg
     5041 ttcagtagtt acttctgtaa cggctcaaca tccgcacggt gtgctgtgtg taacgcctgt
     5101 tgatgatcac accttccgcc aacagtttga agccttgctg gttcaaggct acccgaacgc
     5161 aatcaaaatc ggcttactct gctcgcaagc acaagtagag atcttgtgtg aatatatcca
     5221 aaaaatccgt gcagaaagct cgcattattg ttatgtggtt tacgaccctg tggcagtggc
     5281 aagcagtggg caggcgttat ccgacagtat tttattgcag atagtgcaac aaaaattgta
     5341 tccgctggtg gatttaatca ctccaaacgg cactgaactc gctttattaa gcgacacaga
     5401 aatccagacc tttggtgatg tgaaaaccgc tagccacaaa ctgtttgcac agggaatcaa
     5461 agccgtgtta gccaaaggtg gacattttga atggctgggg gaaacggtaa gagattatct
     5521 gctgactgca aatgaaattt atgcctttag tcacgcccga cagcaaagtg tgaataccca
     5581 tggcacaggt tgcacctatg cttcagcggt tggagcgatg ttggcaaccg gctttgattt
     5641 agctgatgcc gtcactgttg ccaccgctta tttgcaaaaa ggcttatcgg aaaaacaagg
     5701 cagagggcaa actgctttaa gttcactttg ccacaccggc taccctgatg atatcgcttt
     5761 cttcccacaa accgagctga tttctgcccc tcttaaattg ccgaaagagc cttttgctcc
     5821 aacggaatat caacttgggc tttaccctgt tgtagatagc gttaaatggc ttgaacgctt
     5881 aattcttgta ggggtaaaaa ccttgcaaat tagaatcaaa aatcgaccgc ttgcagagat
     5941 tgagcaagaa attgcccatt cggtcgcact ggcgaaacag cacaatgtgc gtttgtttgt
     6001 aaatgattac tggcagttag ccatgaagta tcaggcttac ggcgtgcatt tagggcagga
     6061 ggatttagcc accgccgatt taaatgcaat tcagcaatct gggttacggc ttggtgtttc
     6121 aacccactgc tactttgaaa taatgcgggc attggcggtg aaaccgtctt atatcgcttt
     6181 tggccacgtt ttccctactc aaaccaaagt aatgccgtct caaccacaag gcttaacaaa
     6241 tttagccaaa tatgttgctc tcgttgcacc gcttaacatt ccaactgtgg cgattggtgg
     6301 aattaatgag caaagcattg aaaatgtaat gcataccggt gtcggcagtg ccgcggtggt
     6361 aagtgccgtt acccaagcaa aagattggca acaagcggtc aaaaacttag caaaatttgc
     6421 aaatggaggc cgtaatgaat agaactctta gtacgctaaa cagtggtttg atttgggcgg
     6481 gagcgggcat tagtgccagt gcaatcgtgg ttggcacttg gattgcccca cttggctggc
     6541 aacaaggctt gctggcgata gtgctagggc atttattagg cggcattttg ttttttgctg
     6601 ccggcttaat tggggcgaaa accggcaaaa atgcgatgca aacggtgcaa atttcctttg
     6661 gcagaggctc ggtgtttttc tcccttgcca atgtgctaca gcttgttggt tggacagcca
     6721 ttatgatcta tacaggggca gagatcagta atgcccttag ccttgcctta tgggaatatt
     6781 cggctttctc gctttgggca atcgtgcttg ggttgctgat tgtgctatgg ttatttaccg
     6841 gctctaatca ggtcggaaaa ttcaagttag tgacattgat agcgatgttt ttgctcacct
     6901 tatggctaag cattaaggta ttgaatgggc aggaaaattt tcctgtttcg ggtgaaatgc
     6961 cgtttagcac cgcagtggaa ttagcaacta ttatgcctct ttcgtggcta cctttggtat
     7021 cagactatac cgctaaagcg aaaaagcctt ttgccgcgac cctttcggcg accataggct
     7081 atttgatcac cagtgcgtgg atgtatgcgt taggtctggg tatggtgcta tttaccgggc
     7141 aaaccgaaat tgcccctatg ttactaatga caggaatgag ccttatcggc attatggtga
     7201 tgattctttc gactgtgact accacgtttc ttgatgccta ttccgccggt gtcagtgccg
     7261 gcaatatcac ggcaaaattc aaagaaaccc caaccgccat tctagtcaca atcatcggca
     7321 cgctactggc aatcagttta ccggttaccc aatatgaaaa tttcctgctg ctgataggct
     7381 cggtattcgc cccgatgatt gccgtgcaaa ttgcggattt ctttgtgtta aaacgccacc
     7441 aagcacagcc taatgttgat tgggttgctg ccggattatg gcttgtcggc ttcgtgctat
     7501 accaccttct ctcttaccac caagtgcatt tactactcgg cttaaccatt ccagtgatgt
     7561 tagtgatttt tctcagcacc atttttgtga ggaggttcac aaaatagaaa gataagcggt
     7621 tcaattggag tgaaaatttg ctaaaattga gtcgcttgtt ttaaacaatg actgggtagt
     7681 aacaccacaa gctcaacttg cctaccacac cattaacggt aaagccgatg aggaacggtt
     7741 aaatctttta gttgcccgtg ccggcgtaag agtagcaaaa ggctttgcct tgaataatgg
     7801 ttggaatctg caaccttatg cggaagtaaa cggcattgct gaaaaaggcc aatagtacga
     7861 aagtgcaagt aaaccaatat cagtttggag ttgccgaaaa caagggcaga gtgcaaggtt
     7921 cacttggctt gagtgcagga aacggtaatc accgtttagg tttagaggca tcagttgctt
     7981 caggtaagaa actgaaacaa ccatttaatg tattagtaaa ttatcgttat caatggtaat
     8041 ttaagagggc aggtgaaaac ctgcccttaa attcaataat taatctatct tcccacaatt
     8101 taaacagtaa agatacatct gtttcggatc gttaaaacgt gaaagagtct ctagctgttg
     8161 ttgcggttgc ttcaacagcg gtaaatcaag ccaatttgcc acgctaaatt gtaattgagc
     8221 tttgaaatca cgggcaagcg tgccaaataa gctgtcatct tgctccgcaa accattgtaa
     8281 gccgaactgt tcgactttag gttggttttc cgcttcacgt ttttggttga tcaattcaga
     8341 taacgcatta tatgccacat taaaattgcc caactcatca accaatccgt gttttaacgc
     8401 atcagttccc agccacactt gcccttgagc cactttatct accacctctt ttggcatttt
     8461 cctgccacga gaaaccagct ctaaaaaacg gtcgtagccg ttttcaatcc caatttgcag
     8521 cacttctgcc tgctcttgcg gtaggctttt taaaccggct tgttgtgcta gggcagaagt
     8581 cgctatgccg tcttcgctca caccgagatt tttagcggtt ttttcaaaag ttactgctaa
     8641 accgaaaata ccgatagagc cggtaagcgt attcgggcta gcaataattt tatcgctggt
     8701 agccgcaatc caataaccgc ccgatgctgc cattccgccc attgaagcaa ccaccggttt
     8761 gccggcttgt tgaaaggctt ccacttcttg gcgaatcagt tcagacgcca cagcactgcc
     8821 gccggggctg ttaatgcgta gaattaagcc ttccacattt ttgtcatctc gagcttgttg
     8881 cagtaatttt accagcgtct cgctgcccac attcatttcg tcactttcac cgccagcaat
     8941 cgccccttcc acattcacta ccgcaatttt cggagcattc acttctgcaa agcggtcgtt
     9001 tagttcagtc atataatcta aaaattcaat ctggttataa ctgccttcgc tgtttttgcc
     9061 aaactgtgca atcagtttat cccgactttc ttggctggac actaactgac taacccattt
     9121 ttgatttaat gccagttgag catcatctcc tttagcttgt ttatattttt caatgtaatt
     9181 ggcaggcgat aaatccagtg cttgcggttc aatgttgcgg ttttgagcta gtgttgccac
     9241 agtttgttgc caagtgccgt ttaaccagcc tcgggcattt tgtttcgcct cctcagacat
     9301 atcatcacgc ataaacggct caaccgccga tttataagta ccgacacgga aaatatgcgg
     9361 ttcagcctca attttatcga gcaaggtttt gaaataagtg ttggaataat ttaagccttt
     9421 taaatccacc gcaccgactt tattgagata aatttcatca gcaaaggaag caagataata
     9481 ttgtttttgc gagtagtctt cgcccactgc aatcaccggc ttgcccgatt gtttgaagtt
     9541 gttgatttca ttgccgataa aatccaatga gctgaaatca gcactttgta gcttttgcag
     9601 atctaacacc aagccggtaa ttttcgggtc atttttagcg tggctaatcg cttgcaccac
     9661 atcaaaagtc gagattttaa acggctcgga actacctaat tccgattgca ccaagcggta
     9721 gaaatcagtg aattcttccc gattatctgc taaataacca tctaaattta aacgtaacgc
     9781 cccttgattg aacaccggct tttgcgtgct gccagaagag ctgataaatg cgaccaccgg
     9841 cactaatagc aaaataaaca gaataaaaaa gagattaatg acacactctc taatacaacg
     9901 gaagattcgg taaaatgctt ttaaaatcgt taacatcgga aattcctaaa aataaactca
     9961 gtcggcacag tataaagcaa tcgctaaatg aagaaaatat gctattcttg aacgcaaaaa
    10021 attaacaaag gaacgcttat gcaaatcttg gatttattac accatcgccg ttcaaataaa
    10081 aaatttggcg ataaagcccc gaatgcagaa caactggaac aaattctaaa agccggcttg
    10141 cgagtgccgg atcacgggcg gttaaagcct tatcgctttg tggtgattga aaaaagcggt
    10201 atgccacagt ttggtgaatg cttaaagtct gcggtagcag aatttgatat gggcgaggaa
    10261 cgcttaaaaa aagcggaaaa attagctaat caagctccaa tgattatcgg cgtggtagca
    10321 acattagacg acagcatcgc caaagtgcca agttgggaac aaatgattac cgcaggctgt
    10381 gcaacttatg cgattcagtt agcggcaaat gcacagggct ttgatacggt ttggatcacc
    10441 aataaatgga ttaacggctc tgctcttcgc tccgcttttg gttgccaaga atctgataaa
    10501 atcattgcct taattatgct tggctcaccg gcagagggcg agcaaattgc attagcccct
    10561 gaaagtgaaa gtttagaggg gtttgtacgt tatcttaagt aagcaggtta acagataaaa
    10621 gttagtaata agggcgaaaa atatttcgcc cttgctttta tctgttttcg ccttacttct
    10681 tccagccttt taacgcatcg gcaaaggcat tgttaccaaa agcgttgcga ttgttgcttt
    10741 gcaagcggtc atttttctgc gtatttttgc aaatttctgc tgaatttcga ccgcttgttg
    10801 gctctttttt atcggttggt ttgtcgtcta aacgcatcgt aagggcaata cgtttgcggg
    10861 cagcgtccac ctcaagcact ttgactttca ccacatcacc agctttcact accgtgtgcg
    10921 gatcttcaac aaaagagttt gagagcattg aaatatgcac caagccatct tggtgtacgc
    10981 caatatcgac aaaagcccca aagtttgcca cattggtcac tgtgccctcc aaaatcatac
    11041 cggctttgag gtcggtaatt tcttccacgc cgtccataaa cacggcggtt ttaaactctc
    11101 cacgagggtc acgccccggt ttttctaact ctttgaaaat atcgttcacc gttggtaaac
    11161 caaactgctc atccacaaaa tctttggcgt tgagcgagtg aattttgctg ttgttaccca
    11221 ttaattctgc aagtgttgag gtagttgcct gtaagatttt ttctaccacc gggtaagctt
    11281 ccgggtgaac gcttgaggca tcaagggcat ttttcccacc gataattcgc ataaaaccgg
    11341 cacactgttc aaaggctttc ggccctaaac gaggcacttt tttcagctct gagcggctgg
    11401 taaaacggcc gttttcgtca cggaatgcca cgatattttg tgccaatgtt ttggtcattc
    11461 ccgccacccg agccagcaac ggagcggagg ctgtattcag atccacgccc actgcgttta
    11521 cacaatcttc tactaccgca tcgagtttac gggcaagttg ggattggttt acatcgtgtt
    11581 gatactgccc aacaccaatc gcttttggtt cgattttcac caactcggca agtggatctt
    11641 gcaaacggcg ggcaatcgaa accgctcccc gtaatgaaac gtctaaattt ggaaactcgt
    11701 tagccgcaaa ttcagaggca gaatagaccg atgccccagc ctcactcacc accaccgttt
    11761 gcggtttatt ctctttgatt tctttaatca ccgctttggc aaaacgttcg gtttcacgag
    11821 aggccgtacc gttaccaatc gcaatcagtt ccacattgtg ttgtttgatt aagctgaaaa
    11881 tcgcaagctg tgcctccgcc tctcgcccag tgtgagggta aattgtggcg gtatccagca
    11941 atttaccggt gttatccacc accgccactt tcacgccggt acgcaagccc gggtctagcc
    12001 ccattgtatt tctcgcaccg gcaggggctg ccattaataa tgccgagaga ttgcgggcaa
    12061 acacatcaat cgcctcttct tcagcttttt cacacagggt tgccattaat tcggtttcta
    12121 aatgcagagc tgctttgatt ttccacgtcc aagcaatcac ttgctcacgc catttatctg
    12181 ctggttgatt attaaaaatc acgcccaaat gctcacgaat aatttcttca caatggctgg
    12241 attttgtgcc ttcttctgca gtcggatcgg catttaatga aagtgataac accccttcat
    12301 ttcgcccacg gaacatcgcc aaagcacggt gggaaggcac gctgttaaac ggctcgctat
    12361 gagcaaaata atcacggaat ttctcgccct cttcctcttt gccgtcaatc actttcgatt
    12421 ccaacgtggc gtaagcggtc aaatattggc gaagttttgc aagtagctca gcatcttcgc
    12481 taaaacgctc cattaaaata tatcttgccc cgtctaatgc ggccttggta tccgcaacgc
    12541 ctttttccgc atcaacaaag tttgccgcta aggtttcagg atcttgtttc ggatcattcc
    12601 ataaactgtc cgccaatggc tctaaccctg cttcaatcgc aatttgccct ctggtgcgac
    12661 gttttggttt atacggcaaa tagagatctt ccagctcggt cttgctttca ctgcttagaa
    12721 ttttggcttt taattcatcg gttaatttgc cttgttcttc aatcgacttc aaaatggttt
    12781 ggcggcgttc gtccatttca cgcaaataaa ttaagcgggt ttcaaaatgg cgaagttggg
    12841 tgtcgtctag cccgccggtc acttctttac ggtaacgagc aataaatgga atggtattgc
    12901 cctcacctaa tagcgtgatg gctgcaagaa tttggtgtga gccaacgttg agttcgccgg
    12961 caataatttg gctgattttt agatttaagt cagtcattag ttttccttca ataaatttgc
    13021 tcgaggttta tccaatttct caagctcggt caatgtttcg gcaatttttt gcagattcgg
    13081 ctcttttttc gcacataaca ccatattttc taagctatcc gcttggtgat agtagggtgc
    13141 tttgcttttg acagcctgct caaattgctg ataagcctgt tgaaattgac cctgtttaca
    13201 taaaaaagtg ccgtaattat tcagcacatc agggcggttt tgactcaatt tcagtgccgt
    13261 ttggtaggct ttttcggcat tttcagcatc acctgtttgt tggtaataat aggcaagcac
    13321 cgaataaggg aggtaatctt tttcatcgtg agccaaggct ttatcaatat tctgcttagc
    13381 ttttgggaaa tcattttgct ccagataagc taaagccaaa ttaatacggg cttttaccgc
    13441 ttccgagcgg ttaaattcga cttcagagga agaaggggga agagaagaac aagccgctaa
    13501 taaaaaaatc agaatacaag cggtcatttt tggaaaaaat tttgcaaaca taacgttctc
    13561 ctacaacaaa gggcttaatt ttactgttcc atcctcgcta agactagcga ttttttgcga
    13621 agaagaaaaa tttttcgttt tcatttttcg acgcagatcg caaaaataat aatggggtgt
    13681 tgtgctaggg taaatggtag gaatacactc tctatttaat ataagaattt cattgaaaaa
    13741 acttataaaa cttataaaat agaggcaaaa atgaaaatag tggtattcca gcgtaaagcc
    13801 ttaaagcaat tacgaaaaat cccaactggt gcagaaattc gccgaaaatg tgatgattta
    13861 gcttactttc cctactgtgc caatattaag gcattaacaa atcatcaata tgattatcgc
    13921 tttcgggtcg gaaattaccg tatttttttc aatattgaag gcgaaacgat gaatattgtg
    13981 tctatcgaag aggttaaaaa acgagatgaa agaacttact aatattcaat atttaaataa
    14041 tgaagaagga aaacctgcct ttgccgtact tccgatagca acacttgaat ggcttaagca
    14101 gaaagcaaat attaaaaccg caatagagac cggtattcca tctgctgttg ctggaattgc
    14161 attagataat aactactcag ctctgcgtgc ttggcgggaa tatttaggtt taactcaaga
    14221 agaggtggca caacgcttgg ggatttcgca atcagcttat agccaacacg aaaatgcaaa
    14281 aaatctacga aaaacgaccc gcataaaaat tgcctatgcg ttgggtttaa atgaagagca
    14341 attagatttc taataacaaa aaggcaggaa cctctgcctt ttcactattc agattaatgg
    14401 gttttaaccg caataccttg cccgaattta cgtttttcaa gggtgcgttt ggtgcggtca
    14461 atcacatcgc cagcaagctg tccgcaagcg gcatcaatat catcacctcg tgttttacgc
    14521 actgttaccg tgaaaccgta ctccatcaag gttttttgga aacgatctac ccgagagtta
    14581 gagcttttac cataaggagc ttctgggaac gggttccacg gaatcaagtt aattttacac
    14641 ggcgtgtttt ttaatacttc agcaagttgg tgggcgtggt ttgtgctgtc attgacatga
    14701 tctaacatca catattcaat cgtgaccttg ccgtggttgg cgttagaaac ttcacggtat
    14761 ttattcaccg aatccatcaa cattttgatg ttgtactttt tattaatcgg cactaattca
    14821 tcacgcagtt catcgttcgg agcgtgaagt gaaattgcca acgccacatc aatttgctca
    14881 cgcattttgt ctaatgccgg caccacaccc gaagtggaaa gcgtgacacg acgtttagat
    14941 aagccgtaag caaaatcatc taacatgatt tccattgccg gaatcacgtt attcatattc
    15001 agcaatggtt cacccattcc catcatgacc acattggtaa tcgggcgaac accggtcacg
    15061 ccaaaattgc cgataatttt agaagcacgc cacacttgcc cgataatttc cgccacgctt
    15121 aagttacggt taaagccttg ttgagcggtt gagcagaagg tacaagccaa ggcacagcct
    15181 acttgtgaag aaacacacag ggttgcacgg tcatcttcag gaatatatac cgtctcgatt
    15241 tgctgatcgc ccacttgcat tgcccattta atcgtaccgt ctgcagaacg ttgttctacc
    15301 gccacttcag gggctttaat ttcggcaata cgctttaatt tttcacgcaa tactttattg
    15361 atattgctca tattatcgaa attttcttcg ccaaaatggt agatccattt cattagctgg
    15421 tcggcacgga aaggtttttc ccccatttct gcaaacagtt ctcgcatttc ttgacgatta
    15481 agatttaata aattgatttt ttcttttggt tgttcagcag acccacagcc tgcattggta
    15541 atcagttctg acataaagtt gaaagcctcg ttattacacg gattacggca aaaggttagg
    15601 gcaaatgccc ttattttgcg attggatttt aaagcgtgca attttactgg ctcttgaggg
    15661 attaggctag taatttttaa tcaaaagagt tgaattgcct gagtaaactt atcaagaata
    15721 accttataaa aacaagacta tttacatcat tcccaatgtt ctatagaata gctttcgata
    15781 attctcattc tcaataacaa aaggaggcta aaaatgaaac tatcaacaat taaaaaagca
    15841 ttggtattaa cctttggttt aagtgcagcg atggcaatgg cagagccgtt taaagtagtt
    15901 accactttta ccgtgattca agatattgca caaaatgtcg ccggcgataa agccactgtg
    15961 gaatccatta ctaaaccggg tgctgaaatt cacgattatc aaccaacacc aaaagacatt
    16021 gtaaaagctc aaaaggcaga cttagtgtta tggaacggta tgaaccttga gcgttggttt
    16081 gaacgtttct ttgaaaatgt aaaaggtaaa ccggcggttg tcgtcaccga aggcatcacc
    16141 ccaatgccga ttaccgaagg tgaatataaa aatctaccaa atccgcacgc ttggatgtcc
    16201 accgataacg cattaattta cattgaaaat attcgtgcgg ctttagtaaa atatgaccca
    16261 caaaacgcag acacctataa tgccaatgca aaagcctatg ctgaaaaagt aaaaggtatt
    16321 gctgagccac tccgccaacg tttagctttt attcctgagc agcaacgttg gttagtaacc
    16381 agtgaagggg catttagcta tttagcgaaa gactacaact taaaagaact ttatttatgg
    16441 gcaatcaatg cggaagagca aggttcgcca aaacaagtga aaaaagtgat tgatggtgta
    16501 aaagccaaca aaatccctgt tgtgtttagc gaaagtaccg tttccgacaa accggcaaaa
    16561 caagtggcga aagaaaccgg tgcattatac ggtggcgtaa tttatgtgga ttcactttca
    16621 gagaaagatg gtccggttcc aacctattta gatttgctta aagtgactat cggcaccatt
    16681 gtcgaagggt tcgaacgaag caaaaaataa taagatttag caatgacaac tgtttcagcc
    16741 tccatttccg tcgaaaattt atcggtccgt tataataacg gacatatcgc tttgcaagat
    16801 gtctcgtttc atctggaaaa cggcacaatt tgtgcattaa tcggcgtgaa tggaggtgga
    16861 aaatccactc tgtttaaaag tttaatgggg ctggttaagc cattaaccgg ctctgttaag
    16921 ctgagtcagc tcccgattgc taaagccctc aaacaaaatt tggtttccta tgtgccacaa
    16981 agtgaagaag tggactggca atttccagtt tcggtttacg atgtggtaat gatggggcga
    17041 tacggctata tgaattttct acgccgccca agccaaaccg ataagctcaa agtagagcaa
    17101 gcaatgcaac gccttgatgt tttacatctc aaagacaggc aaatcggcga actttccggc
    17161 gggcaaaaaa aacgggtatt tttagcccgt gccttagctc aagaaagtaa aatcatctta
    17221 cttgatgagc ctttcaccgg tgtggatgtt aaaaccgaaa atgcgattgt tgagctactt
    17281 aaacagctta aaaatgaggg gcatttgatt ttagtttcca cccacaacct tgccagcgta
    17341 ccaagctttt gcgatcaggt tttgatggtc aatcgcacgc tactggcaaa aggtaaaacg
    17401 gaagaaatct ttaataatca aaatttagaa cgggtgttcg gcggtttatt gcattatcaa
    17461 aagtagtgtt tcagcaacaa atcacaaaca aatagggagg caaatgcctc cctatttttg
    17521 tatcaatgaa tcttagaata tgcaaaactg aggaaaaaaa tggccgcttg cacgagaata
    17581 atcgtcggcc ctgttgcggc atcaatatgg tagctaagca acgtgccgaa taccgatgaa
    17641 aatatcgcaa cgcctaaggc aatcagtaac atactatcaa accgcttagt cagcaggtaa
    17701 gcagtgatcc ccggggtaat caacattgcc accactaaaa tcacgcccac cacttgcatt
    17761 gcactgataa tagttaaagc aagcaaggaa agtaaaccat aatgcaataa tctaaccggt
    17821 aagcctgcta ctttggcttg attaacatca aagcaataga gcaagaagtc tttgcgtttc
    17881 gccaccatca ccacaaaggt aaagaggctt atgagtaaag tctgaagcaa atcgcttttg
    17941 gttacgccta atagattacc aaataaaata tgggttaaat gctcaccggt attaaaggcg
    18001 gtaaacagca agatcccaaa ggcaaacata cctgaaaaca caatccccat taccgtgtct
    18061 tctttcaagc gactattttc ttttaaatag cccaccgata aggcacagcc taatcctgaa
    18121 aaaaacgccc ctattgagag tggtaacccg gcaagtgagg aaatcaccac accgggcaga
    18181 acagcgtgcg aaattgcatc gcccattaaa gaccagcctt tcagcaccag atagcaagat
    18241 aaaaccgcac tcacgccagc aactaaaatt gcggtaatta acgcaatttg cataaattca
    18301 aattgcaacg gctctaaaat ccaattaagc attttgaacc tccacacggt gcaatttccg
    18361 cttttgagta atcaagccat atttaggagc aaagcagaat gcgaataaga aaattaaggt
    18421 ttgtaagcac acaattaccg caccggttgc accgtctaaa aagtagctta aatatgcccc
    18481 aatccctgat gtcagcgtgc cgataagcat tgcgatcagc actaatctag ggaaacggtc
    18541 ggtaagtaaa taagcagttg ctcccggcgt gacgaccatc gcaataacca aaattgcccc
    18601 aaccgtttgc agagccacta ctacacaggc acttaataag gtaaagaaaa tcactttata
    18661 gcgtaatggc gaaagcccga ctgacaatgc gtggtgttcg tcaaaaaaga cgagtagcaa
    18721 atccttccaa aataggatta aacccagtaa cgaaatcgca ataatcagta ccacctgcca
    18781 caagtcatca tcagcaatgc ctaaaatatt tcccattaca atcgaattaa catcaaccga
    18841 tgttggattg agggaaacaa taaacatacc aagcgcaaaa aaagtcgtga aaataaagcc
    18901 gataaccgca tcttctttaa ttttcgtcag gctttttacc caaagaatcg ataatgccgc
    18961 caaaatcccg gaaaaaaacg caccaaaggc gtagggcaat tttagtgcat aagcgatggc
    19021 aacacctggc actacagcgt gtgataaggc atcaccaatc aaagaccagc cttttaacat
    19081 caaaaaggcg gaaagaaaag cacaaactaa ccccacgccc atactgacaa aaatcgcttt
    19141 ttgcatatag ttgtaggtaa aaggctctaa taaaagatca agcataaaat cctaacaagt
    19201 tgttgataat agttcgcata tactatcata taaactcctt ttcttgtatg gattaaactt
    19261 aaatatctac tttaaattga taaggatcag gatagtaata acgaaaacca agctcttggc
    19321 aaattttgtc tgcttttatc agccttacaa gcggttgatt ttcttcagaa aaatgcaaat
    19381 ccgctaaccc aaaacgtttt gccatttcac tataataatc tttacggctt gggtgctgtt
    19441 cggcacataa atgaaaaata cgctgcccgt tcggctgctc caacagcaat gaaatggctg
    19501 caatacagtc ctctaaatgc actaaattga ccggctgccc tgctccactc aagttctgtt
    19561 ttcccgccaa ataaaaaacc gggtgccgtt ttttgcccac caagccagct aaacgcaaaa
    19621 tatcacaatg aattggctgg ctcagcaacc aattttccat ttttactaat aggttagcag
    19681 aatcaaccac tgcattttca tcaaaaacgc ccgatttcat tggcaaaacc gaagtcgagc
    19741 tggtgaaaac cagatgtttc aagccctttt ctattgcaag cgaaactaat gtttgaatac
    19801 cgcaaccgta attttcaggg cgaatttggc taaggggcaa ggcaatcact aacgcatcag
    19861 cagcaagtaa ttgctcgatt tcgcttgtca ctgctaacgc atttaaatct agaggataac
    19921 attctatcgc taattctccg accgttcgct tagtacctgc aacacgccag cccttatttt
    19981 gtaatgcttc agctaaaggt agtccgagcc agccaagccc taaaatggta atttttttca
    20041 tcatttacgt ttctcaagat taaaattgga atgaggggaa attcaggtac aaaaaaagca
    20101 cctcgtggtg ctatctattt tatttcta
//
LOCUS       DANLVT010000037        20041 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.037, whole genome shotgun sequence.
ACCESSION   DANLVT010000037 DANLVT010000000
VERSION     DANLVT010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20041)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20041)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20041
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.037"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            109..867
                     /locus_tag="PXC99_001121"
     CDS             109..867
                     /locus_tag="PXC99_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03761 family integrating conjugative element
                     protein"
                     /protein_id="HDL5417582.1"
                     /translation="MTTPLDLQLGPLRSEITFTLHTQYAHKLWMGRPMIRNEEGKVTQ
                     SSIISVPNCFAMLTQIQRAASEDDPYADDYLIQFEESVINYRKEIQKLTNDIVTLYAK
                     MLPEGISIERCANISPISYPIYVNSQLGYQLLYLLGDFDSLCRSVMTAAHIAIINRAE
                     AQDWIEAGARLIRKCFGIVERYKNSGITRRDYQENNARYQAAVKRMGYTLSDAVLTGE
                     HRAEFAPFIKQNGIVEEEQPVETHITTQANESQE"
     gene            876..1385
                     /locus_tag="PXC99_001122"
     CDS             876..1385
                     /locus_tag="PXC99_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3158 family protein"
                     /protein_id="HDL5417583.1"
                     /translation="MNLISDEIYRQLVKDSGLNASLKQLFSHFDTVSDYAVLQEQIQQ
                     ARAYFMNAQDGMVQYVRSEFSPLAVYMIKDKASSSGGTFLRWRSMQNARTGGTVWQPI
                     VDDESVPVDVRQKVVAVEKDRILINMQISVFNHILRQLVDCTEKLKEVDNAVAKSGLY
                     PLKNPVCNP"
     gene            1491..1691
                     /locus_tag="PXC99_001123"
     CDS             1491..1691
                     /locus_tag="PXC99_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417584.1"
                     /translation="MANVKMKFSVEIDGEVIIQHEIEEQAEKRSYFSQERKLAKEIIN
                     KMNEFYSDRWIDAKPWIASDDK"
     gene            complement(1807..2010)
                     /locus_tag="PXC99_001124"
     CDS             complement(1807..2010)
                     /locus_tag="PXC99_001124"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417585.1"
                     /translation="MELRKFPHHIIFIEQAKYGLQNYLLFELLTRTGQAVYFKHPIFH
                     TPNKEMRIVFVQDHKFLSLWQNK"
     gene            2119..2637
                     /locus_tag="PXC99_001125"
     CDS             2119..2637
                     /locus_tag="PXC99_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL5417586.1"
                     /translation="MRYIKYSLLLISTMIMSGCAELSAINDKVGDWAGQMNQTLYGSK
                     ESSVEQHNGRQVYIKTRNGKYVYQDSGTLQLKQNIDEVFLKVRREFGFRPTNADSDAR
                     KVYHTVQGTFYHVSGYFKSDVDNDGVDLGENYLEVIIEKGSKGTVNVEWKATGSTRWL
                     DSTKQRLLNTLK"
     gene            2798..4849
                     /locus_tag="PXC99_001126"
     CDS             2798..4849
                     /locus_tag="PXC99_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HDL5417587.1"
                     /translation="MKLFICEKPSQARDLASVLGATSKGDGLLATNDKSIIVTWGFGH
                     LVEQYQPEDYDEVWKRWAFETLPIIPAQWKMAPKKESKKQYNVVIGLIKKASLVVIAT
                     DADREGEMIARELLDLAGYRGQIQRCWLSALDDASIRKALQTLKSGKETEALYYAGMG
                     RSRSDWLIGMNFSRLFTLMAQAKGYSGKPLSVGRVQSPTLALVVNRDREIANFVPKAH
                     YSLAVQLATASDETFVAGLSIPEQYLDESGLCLDSRVIQQAEAQIKQVGIAKVITVET
                     KREKKAPPLLYALSDLQGECNRLFGFGAQQVLDIAQSLYEEHKITTYPRTDCGYLPES
                     QLTEVPMVIRSLVAADSELQTLLPRLNLQQKSRAWDDKKITAHHGIIPTIKKADLSKL
                     SEEEMKVYDLIRRRYLAQFLPHLETDKTIATLQSSGHTLIARGNVIVSQGWRILFGKN
                     ADEDVGSDDEKQGLPALTANQQCRVTHSEVRTLQTKPPAHYTEGTLLEAMKNAARFVT
                     DPRLKQRLRETEGLGTEATRAGLIQGLIDKGFLIKKKKSLMASAEAIALIDSLPDLLK
                     NPGLTALWEQALNQIAEGSMTLDDFMQRQETFVRQLIGNCMQQGMSLGNIEIRKCPEC
                     GKPMRKINHAKGTFWGCTGYPDCQHKEADKKVKSTSNKSTKKNSSLNVLDQLNKLRSQ
                     L"
     gene            5670..6101
                     /locus_tag="PXC99_001127"
     CDS             5670..6101
                     /locus_tag="PXC99_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3577 domain-containing protein"
                     /protein_id="HDL5417588.1"
                     /translation="MTTQTSTQKNYFNLHTTGIGYLNDIRLVEPKKGNPFYACRIAAL
                     VGESDSPEYRYFDMNVVGKETETLIKRCQKAVSEEKKVLVSFVMADLWFDTFTYSTDS
                     KFHKKGDTGVSVKGRLIRIKMIKIDGEIAYQEKPKSDEQSE"
     gene            6119..7111
                     /locus_tag="PXC99_001128"
     CDS             6119..7111
                     /locus_tag="PXC99_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005588345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5417589.1"
                     /translation="MLCWALLLDVQDLRVTFKTPDGDVTAVNDLTFSLNAGETLGIVG
                     ESGSGKSQTAFALMGLLADNGRISGSAKFNGQEILNLPETQLNRLRAEQIAMIFQDPM
                     TSLNPYMKIGEQLMEVLMLHKGMDHKTAFEESVRMLDAVKMPESRKRMNMYPHEFSGG
                     MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKSEFNTAIIMITHDLG
                     VVAGICDNVLVMYVGRTMEYGTAEQIFYTPSHPYSIGLIGAVPRVDGQEEELITIPGN
                     PPNLLRLPSGCPFQPRCVHATKQCLKAPALTLLNDQRLRACFVPAEQLIRGNAS"
     gene            7108..8097
                     /gene="oppF"
                     /locus_tag="PXC99_001129"
     CDS             7108..8097
                     /gene="oppF"
                     /locus_tag="PXC99_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000994906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide/oligopeptide ABC transporter
                     ATP binding protein OppF"
                     /protein_id="HDL5417590.1"
                     /translation="MNTEKKVILEVKDLSVHFNIKDTKSLFFAKHQTLKAVNHVSFQL
                     YEGETLGVVGESGCGKSTLARAIIGLVESSGGNILWLGKELTQQSAKEWKTIRSDIQM
                     IFQDPLASLNPRMTIGSIIAEPLKIYQPHLTAEEVKEKVRAMMMKVGLLPNLINRYPH
                     EFSGGQCQRIGIARALIVEPKLIICDEPVSALDVSIQAQVVNLLKSLQREMGLSLIFI
                     AHDLAVVKHISDRVLVMYLGNAVELGDYEQVYHDTKHPYTKALMSAVPIPDPQLERNK
                     QIQLLEGDLPSPINPPSGCVFRTRCPLADQHCIADKPLLKGRDNHVVACFKAE"
     gene            complement(8201..8959)
                     /locus_tag="PXC99_001130"
                     /pseudo
     CDS             complement(8201..8959)
                     /locus_tag="PXC99_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326384.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
     gene            complement(9089..9730)
                     /gene="bioD"
                     /locus_tag="PXC99_001131"
     CDS             complement(9089..9730)
                     /gene="bioD"
                     /locus_tag="PXC99_001131"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HDL5417591.1"
                     /translation="MAKVFFITGIDTDIGKTIATGWYAKKLMQQGASVITQKMIQTGC
                     RGIAEDLLIHRKIQGIELTEEDKQGITCPYVFDYPCSPHLAAKLEPRTIERKKIETCT
                     ALLCEKYDYVLLEGAGGLCVPYNEEETTLDYLCQHQYPVILVTSGKLGSINHTLLSLQ
                     VLNSKRVSVHAVIYNLYPETDQVISQETQHFLRRYLEKYSPNTLFEIMDLISV"
     gene            complement(9748..10503)
                     /gene="bioC"
                     /locus_tag="PXC99_001132"
     CDS             complement(9748..10503)
                     /gene="bioC"
                     /locus_tag="PXC99_001132"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005755527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HDL5417592.1"
                     /translation="MDRIDKGRIKQRFSAAVSNYDQQARAQQQIHQRLLSLLSYIDRQ
                     AFQRALEIGCGTGGLTKQLMSQLQVEHWELNDLCDMREHLQSVLPQPFHFHCGDAEQL
                     PFPQQYDLIASASVVQWFEDKAGFIARCKVRLKKHGFLLFSTFTPENLTQIKHLTGVG
                     LTYPRLEDWQKWLVPEFEILALEHEEIVLHFDDPLAVLKHLKQTGVTATQQQRWTKGQ
                     LHAFCQQYQQHYRNAQHKVELTYTPMYVLARLT"
     gene            complement(10507..11154)
                     /locus_tag="PXC99_001133"
     CDS             complement(10507..11154)
                     /locus_tag="PXC99_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005758126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HDL5417593.1"
                     /translation="MKTQHISQQGDNLIVYFAGWGTPPSVVEHLILPENYDLCLCYDY
                     RDLHCDVDFSAYQHIRVVAWSMGVWVAERVMQGYPLLSATAINGTGLPCDDQYGIPEA
                     IFAGTLSGLNEDNRTKFERRICGSKTLLRDYQHYSMRPTLQEIHAELTALYTFLQQDH
                     RTDLISWSKAIVGSKDKIFPAQNQRAYWQDRCAITEIAGEHLLFPHFTHWETCWL"
     gene            complement(11151..12314)
                     /gene="bioF"
                     /locus_tag="PXC99_001134"
     CDS             complement(11151..12314)
                     /gene="bioF"
                     /locus_tag="PXC99_001134"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005719374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HDL5417594.1"
                     /translation="MIRYYQQQLADLKAQNQFRQLPQLIHRGRFIQREDNTMLNMSSN
                     DYLGLANNEALRQAFFTQYQDQLPALTSSSSRLLTGSFPIYDELESLMAQAFGRETAL
                     LFNSGYHANIGILPALADKKTLIVADKLVHASMIDGIRLAQCEFVRFRHHDYVHLEQI
                     LQKNDRTFERIIVVTESVFSMDGDCADLTQLVALKQRYPQVMLYVDEAHAIGVLGEKG
                     LGLAEQQGCINQIDILVGTFGKALGSMGAYVICDQVIRDYLVNKMRPLIFSTALPPFN
                     VAWTHFVFQQLPHLQAERAHLAQLSQHLRQAIVDIFQVPMPSESCIVPYILGDNELTV
                     RTAQRLQQQGYYCLPIRPPTVPKGTSRIRFSLTADMQVAEVEQFIACLRELAE"
     gene            complement(12311..13612)
                     /locus_tag="PXC99_001135"
     CDS             complement(12311..13612)
                     /locus_tag="PXC99_001135"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HDL5417595.1"
                     /translation="MNEQQLLECDRQHIWHPYAALNADFPLFAVERAEGVYIQLKNGQ
                     QLIDGMSSWWSAIHGYNHPRLNHAATQQLSQMSHVMFGGLTHQPAVELAQQLVNILPE
                     SLDKIFFADSGSVAVEVAMKMAVQYQHAKGETQRYKFATIRSGYHGDTWHAMSVCDPV
                     TGMHSLFAKGLPVQYFLPQPPVKFGQAWQPEAMQPLQDLLAQHGDEIAGLILEPVVQG
                     AGGMYFYSPEYLVQAKALCEPYGILLIFDEIATGFGRTGKLFACEHANVVPDVMCIGK
                     ALTGGYLTLSATITNQAVADVICSGEAKCFMHGPTFMANPLACAVAAESIKLLLASPW
                     QQRIQQIEQQLRQELRQAEALDCVAEMRVLGAIGVIEMKAPVNMASLPPRFVQNGVWV
                     RPFGKLVYLMPPYIISSDQLSQLIHGTIRTLQEEYAHKESL"
     gene            13754..14641
                     /gene="psd"
                     /locus_tag="PXC99_001136"
     CDS             13754..14641
                     /gene="psd"
                     /locus_tag="PXC99_001136"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005755522.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDL5417596.1"
                     /translation="MNILEKKAQLSYWQRIKIAFQYVMPQLYLTRLAGWFAKQQWGAV
                     THFVIKLFAKKYHVDMSEAAKPNFSDYASFNEFFIRPLADNARPINQNPTALCLPADG
                     RISQLGHIEQDLLLQAKGHYFSLNDLLAGDEALAHHFKDGEFATTYLSPRDYHRVHMP
                     CDATLCKMIYVPGDLFSVNPFLAEHVPNLFARNERVICVFDTEFGKMVQILVGATITA
                     SMSTVWAGVINPPRPEKITTWTYEGESAVKLLKGQEMGAFQLGSTVINLFEKDRVQLA
                     SHLQVDSPVRMGEILAHQK"
     gene            14666..15220
                     /locus_tag="PXC99_001137"
     CDS             14666..15220
                     /locus_tag="PXC99_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL5417597.1"
                     /translation="MSQQFFDQVSLESQLEVSAEAVAKGIFDVLNQNPPALELNEVSH
                     ALQTLQQQAKFKEIEAVGAQFLAENAQKAGVNTTESGLQYEVLVAGEGQIPAREDKVR
                     VHYTGTLIDGTVFDSSVKRGQPAEFPVNGVIAGWIEALSMMPVGSKWRLTIPHNLAYG
                     ERGAGASIPPFSTLVFEVELLAIL"
     gene            complement(15280..15603)
                     /locus_tag="PXC99_001138"
     CDS             complement(15280..15603)
                     /locus_tag="PXC99_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005755520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417598.1"
                     /translation="MNWKAVLIFSVLGSLVSCASYSEHAVQRIEAGKSFAVTGNTKRI
                     NTMACQDNDDWYLDGYRVGKSFREHQQKMLIQRTAYCEEQTGKAVPDKFRHSWNSGYQ
                     QGLKR"
     gene            complement(15627..16730)
                     /gene="proB"
                     /locus_tag="PXC99_001139"
     CDS             complement(15627..16730)
                     /gene="proB"
                     /locus_tag="PXC99_001139"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005719361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HDL5417599.1"
                     /translation="MKIDKTLVVKFGTSTLTQGSAKLNLPHMIDIVRQLAQLHQAGFR
                     LVIVTSGAIAAGRHYLNHPQLPPTIASKQLLAAVGQSQLIQTWEKLFAIYDIHIGQIL
                     LTRADIEDRERFLNARDTLRALLDNQIIPVINENDAVATSEIKVGDNDNLSALVAILV
                     QAEQLYLLTDQQGLFDRDPRKHPDAKLIADVDKITDHIRAIAGGSGTSLGTGGMSTKI
                     SAADVATRSGIETIIAPGNRPNVIVDLAYGQAIGTKFSVQADRLESRKQWLYAAPSAG
                     IITIDAGAENAMLIQHKSLLPAGIVNVEGRFSRGEVVKIRTQQGKDVALGMPRYNSDA
                     LHLIQGKHSQDIEQVLGYEYGAVAVHRDDMIVL"
     gene            16896..17884
                     /locus_tag="PXC99_001140"
                     /pseudo
     CDS             16896..17884
                     /locus_tag="PXC99_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252470.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
     gene            17959..18606
                     /locus_tag="PXC99_001141"
     CDS             17959..18606
                     /locus_tag="PXC99_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3560 domain-containing protein"
                     /protein_id="HDL5417600.1"
                     /translation="MTINTYAKFAPTVFVAKCSESHTKGEIITLTSKYGNETEVQVHN
                     LVKQDGEHYFYSFTRCDGMDSQSFAQQKAERYQGYADNAAKRSQDWVNAANEGCDFLS
                     LGEPIKIGHHSEKRHRNLIERNARRMDNAVAEMNKAASYESRIAYWEKMAGKIDLSMP
                     ESLEYFKFELDKAKTKHKELKDNPEKREHGYSLTYAKKAVNELEKKVKLAELLWA"
     gene            18630..19037
                     /locus_tag="PXC99_001142"
     CDS             18630..19037
                     /locus_tag="PXC99_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization protein"
                     /protein_id="HDL5417601.1"
                     /translation="MNRQGIYINGKQVFDSQGEDIQSIGFFGCNIQTVVGINKGSILV
                     SSNSNQLLVNGQSIELGSEPVLKIEVLGNVQKLSAGAADVSITGDAGSVDTVSGDVSI
                     KGNVASYVKTVSGDVRCRAITGSVETVSGDIYR"
     gene            19135..19485
                     /locus_tag="PXC99_001143"
     CDS             19135..19485
                     /locus_tag="PXC99_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417602.1"
                     /translation="MTTINLSQQERELVEFVWNNRNTPWFFHCSVSNVSRNNTSRQIA
                     VCVIKDNQLISLDELIAKLCGYKLRQNGLYVTVHNMDAVFDTLYRFMCKLNDEMEANE
                     NVCPYLSLAHYEVF"
     gene            19576..19938
                     /locus_tag="PXC99_001144"
     CDS             19576..19938
                     /locus_tag="PXC99_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417603.1"
                     /translation="MIDTFFDLDDTSCYLGNWEDILKEYDDCLSVEDFWHSAKEFDTV
                     PHFGNLYQERVILKLIARFCIELNIEQDSGLVEFDYYINAIDTHFYINSQRICDIDDW
                     NEMLDKIREEMTPAKLVA"
BASE COUNT         5975 a         4196 c         4126 g         5744 t
ORIGIN      
        1 tgattaaaaa ataaacagag tagacagtgt ctacaaaggt taaaaaaata gacaatggaa
       61 agcccctttc caaaggctaa aaaacaatca aataaacaag gagcatatat gaccacacca
      121 ttagacttac aattaggtcc acttcgtagt gagatcacgt ttacgctaca tacccaatat
      181 gcccataaat tatggatggg gagaccaatg attcgtaatg aggaaggcaa agtaactcaa
      241 tcctccatta tcagcgtacc aaattgcttt gcaatgctaa cccaaattca acgggctgca
      301 tcagaagatg atccttatgc tgatgattac cttattcaat tcgaggaaag tgtgatcaat
      361 tatcggaagg aaattcaaaa actcaccaac gatattgtca cgctctacgc caaaatgttg
      421 ccggagggaa tttctattga acgctgtgcc aatatttccc cgatttctta cccgatttat
      481 gttaattcac agttaggcta tcagttgctt tacttacttg gtgattttga cagtctttgt
      541 cgctcagtaa tgacagctgc tcatattgcc attatcaatc gtgcagaagc tcaagattgg
      601 attgaagcag gtgcaagatt aattcgtaaa tgttttggga ttgttgaacg ttataaaaat
      661 tccggtatta ctcgccgaga ctaccaagaa aataatgctc gctatcaagc tgctgtaaaa
      721 cgaatgggct atacattgtc agatgctgta cttaccggtg agcatcgtgc tgaatttgct
      781 cctttcatca agcaaaacgg cattgttgaa gaagaacaac ccgtagaaac ccatatcacg
      841 acacaagcaa atgaatctca agaataagga gtgatatgaa cctcatttct gatgaaattt
      901 atcggcaatt agtcaaagac tccgggttaa atgcatctct gaaacagcta tttagccatt
      961 ttgatactgt ctcagactat gctgtattgc aggagcaaat acagcaagca cgggcttatt
     1021 ttatgaatgc acaggatggt atggttcagt atgttcgtag cgaattctct ccccttgcgg
     1081 tctatatgat taaagataag gcttcttctt ccggtggtac gtttttacgc tggcgcagta
     1141 tgcagaatgc cagaaccggt ggcacagttt ggcaaccgat tgtagatgat gaatcagtcc
     1201 cggtcgatgt gagacaaaaa gttgtcgcag tggaaaaaga cagaattttg atcaatatgc
     1261 agatttccgt gtttaaccat attttgcgac agttggttga ttgtactgaa aaactaaaag
     1321 aagtggataa tgcggttgca aaatcaggtt tgtatcccct gaaaaatcca gtttgtaatc
     1381 cctgaaaaag taaggtttgt aaagcctgca ttaaaaggcc ttttaaaggt aaggggacaa
     1441 gcccccttac ctttcacgaa gaaaatgcct ttattatttc ggagtaaaca atggcaaatg
     1501 taaaaatgaa attcagtgtt gaaatagatg gtgaagttat cattcaacat gagattgaag
     1561 agcaagccga aaaacgctct tacttttcgc aagagcgtaa attggccaaa gagattataa
     1621 ataaaatgaa tgaattttat tctgacagat ggattgatgc aaaaccttgg attgcttctg
     1681 acgataaata aaagcaatga gcatcatcga ttacaggttt cataaattga tttcgctaag
     1741 gtatttaact taatagcaat aaaatcttcc tgagtgtagg acgatttatc ccattcttta
     1801 ataaggttat ttgttttgcc atagggataa aaatttatga tcttgaacaa agacaattct
     1861 catctctttg ttaggggtat ggaatatcgg atgcttaaag taaaccgctt gtcctgttct
     1921 tgttaatagt tcaaagagta agtaattctg taatccgtat ttagcttgct caataaagat
     1981 aatgtggtga ggaaattttc ttaattccat aatagtccct agcattttct ctcttactac
     2041 ctaaaagaat tttaagtaga ttttaaccgc acttttgcaa aaaatgaatg cagataaccc
     2101 gcttgtaagg agaattccat gcgttacatc aaatatagct tacttctcat ttctactatg
     2161 attatgtcag gttgtgccga actttctgca attaatgata aggttggaga ttgggcagga
     2221 cagatgaacc agactctcta tggttctaaa gaaagctcag ttgaacagca taatgggcga
     2281 caggtttata ttaaaactcg aaatggcaag tatgtctatc aagattccgg cacattacag
     2341 ttgaaacaga atattgatga agtcttccta aaagttcgcc gagaatttgg cttccgtcca
     2401 accaatgcag atagcgatgc acgtaaggtt tatcatacgg tacaaggtac cttttaccac
     2461 gtttccggtt atttcaaatc tgatgtagat aacgacggcg tggatttagg tgaaaactac
     2521 ttagaggtta tcattgaaaa aggcagtaaa ggcacggtga atgttgaatg gaaagccaca
     2581 ggtagtacaa gatggctaga tagtaccaaa caacgtttac ttaatacatt aaaataagaa
     2641 ctcatatcgc tcctagaacc tcttcccagt ggaaacactg ggattttttt atcgttctca
     2701 tctctcaatt tattgcattc tacaagataa taagtcgttg aatgctattt aatcagcaca
     2761 ttactattgc ctatccgtat tgattttgga aaatagtatg aaactgttta tttgtgaaaa
     2821 gccctctcaa gcccgagatc ttgcaagtgt attaggtgct acatcgaaag gggatggact
     2881 attggcaact aatgataagt ctattattgt aacttgggga tttggtcatc ttgttgagca
     2941 ataccaaccc gaggattatg atgaagtttg gaaacgctgg gcatttgaaa cattgccgat
     3001 cattcctgct caatggaaaa tggctcctaa aaaagagtcc aagaaacaat acaatgtagt
     3061 catcggatta attaagaaag cctctttggt tgtgattgca accgatgcag acagagaagg
     3121 tgaaatgatt gctcgtgaac tgttagattt agccggatac cgaggacaaa tacagcgttg
     3181 ctggctatca gctctcgatg atgccagtat ccgaaaagct ctccaaacac tcaaatcagg
     3241 taaagaaacc gaggcacttt actacgctgg tatgggacgt agccgctcgg actggctgat
     3301 tggaatgaac ttctcccgtc tatttacctt aatggcccaa gcaaaaggct attccggtaa
     3361 gccattaagc gttggtcgag tgcaaagccc aacactagct cttgtggtca atcgagacag
     3421 agagattgca aatttcgtgc ctaaagctca ttactcctta gcagttcaat tagcaacagc
     3481 gtctgatgaa acctttgttg ccgggctttc aatacctgaa cagtatttag atgaatcagg
     3541 gctttgcctt gatagtcggg tcatacaaca agctgaagct caaattaaac aagtaggcat
     3601 agccaaagtg ataacggttg aaaccaaacg agagaaaaag gcaccgccgt tgctttatgc
     3661 attaagtgat ttacaagggg aatgtaaccg cttgtttggt tttggggctc aacaagtact
     3721 tgatattgct caatcacttt atgaggagca taaaattact acttatcccc gtaccgattg
     3781 cggctatcta cctgaatctc agcttactga agtaccgatg gtaattcgtt cattagtcgc
     3841 cgctgattca gagttacaaa ctctattgcc tcgattaaat ctacaacaaa aaagtcgggc
     3901 ttgggatgat aaaaaaatta ctgctcacca cggtattatc cccactatca aaaaagcaga
     3961 tttaagcaag ttaagtgagg aggagatgaa ggtctatgat ctcattcgcc gtcgctatct
     4021 cgctcaattc ttaccgcact tagaaacaga taaaactata gccaccttgc agtcctctgg
     4081 acacactctg attgctagag gaaatgtgat cgtttctcaa ggttggcgta tcctgtttgg
     4141 taaaaatgca gatgaagatg ttggtagtga tgatgagaaa caaggcttac ctgcattgac
     4201 ggcaaatcag caatgccgtg ttacacattc agaagtccgg acattacaaa ccaaaccacc
     4261 ggcacactat actgaaggaa cactactcga agcaatgaaa aatgcagctc gctttgtgac
     4321 tgatccaaga cttaaacaac ggttgcgtga aacggaggga ttgggtacag aggcaactcg
     4381 tgccggattg attcaagggc tcattgacaa aggtttttta attaagaaga aaaaatccct
     4441 aatggcttct gctgaagcga ttgcccttat tgatagccta ccggatttat taaaaaatcc
     4501 cggtttaacg gctctttggg aacaggcact taatcaaatt gctgaaggca gtatgaccct
     4561 tgatgacttt atgcaacgac aagaaacctt tgtacgacaa cttatcggaa attgtatgca
     4621 acaaggtatg tcattgggta atattgaaat tcgaaaatgc ccggagtgtg gtaagccaat
     4681 gcggaaaatc aatcacgcta aaggtacatt ctggggttgt acaggatatc cggattgcca
     4741 acataaagaa gcagataaaa aagtcaaatc gacttcaaat aaatctacca agaaaaatag
     4801 tagcttaaat gtgctagatc agctgaataa attaagaagc cagttataaa tctaagcaga
     4861 ttatggtatt atcaaagtgc aaagaacccg tttaatagat tgtcggttat caatctatac
     4921 cagccgaaat gtctcccagc attctgaaag ggaactctgt aaaattacag gaatgccacc
     4981 taaacaataa atggataatg ccagccactt tatccgttgt attttgtcac atgcgtgatt
     5041 gcaatgtcat aatattaccc gacttgggga tattatgaca ttgcaatcat tgctcacttt
     5101 tcttagcctg agcccacagg tgaataaagg gtgccgtttg tgtcctcgat gatgccacag
     5161 atatgccgat taaagaccac aaggtaatcg ggtaaattac gaacgaaaat atcaacattg
     5221 tcacgaaggt gctgctattt tcaatatagt aacttatatt ggtctaactt aaatttcatt
     5281 tattcttcaa aagtacaaca ccgttggtaa gtgatttatc aacggtgttg tcatttccaa
     5341 ttctctaaaa tcaaaattca attctcaatt aactttatga ttcaatatga ctaaattatc
     5401 ctcaatttaa gacgctgtat ataacagcac ttaataagtc gcataactcc tgagaagcga
     5461 cggctatcct tagaggtagt tgagttattg ccaaaatgtc tcctagcatt ctgaaaggga
     5521 acgccacttt tgtgggaatg ccacctaaac cctctaccat ctcagtgaag catcattgag
     5581 atttcatttt acttccacct cgcggggaac atttttcccg tgttgggcaa ggatgtttct
     5641 ccgctttttt acatttggag aaacaaacta tgacaactca aacttctact caaaaaaatt
     5701 acttcaacct tcatacaaca ggcattggct atctaaacga tattcgtttg gtagagccta
     5761 aaaaaggaaa tcctttttat gcctgccgta tagcagctct ggttggcgaa tctgactctc
     5821 ctgagtacag atattttgat atgaatgtag tcggtaaaga gactgaaaca cttatcaaaa
     5881 gatgccaaaa agcagttagt gaagagaaaa aagtgcttgt gtcatttgta atggctgatt
     5941 tgtggttcga tacatttact tactcaacag atagtaaatt ccacaaaaaa ggcgataccg
     6001 gtgtatctgt aaaaggtcgc ttaatccgca tcaaaatgat taaaattgat ggggaaatag
     6061 cctaccaaga aaagccaaaa tcagatgagc aatctgagta attttaccta agcccgacat
     6121 tttatgttgg gctttattac tcgatgtaca agatttgcgc gtaactttta agaccccaga
     6181 tggcgatgtt actgccgtca atgatctgac tttttcttta aatgccggtg aaaccctcgg
     6241 cattgtcggc gaatctggct caggaaaatc gcaaaccgct tttgctctaa tggggctatt
     6301 agcagataac gggcgaattt caggatcagc aaaatttaat ggacaagaaa ttctcaactt
     6361 gcctgaaaca caacttaacc gcttgcgtgc tgaacaaatt gcgatgatct tccaagatcc
     6421 aatgacctcg ctgaaccctt atatgaaaat cggcgaacag ctaatggaag tactgatgtt
     6481 gcataaaggc atggatcata aaactgcgtt tgaagaatcg gtacggatgt tagatgcggt
     6541 gaaaatgccg gagtcacgta aacgtatgaa tatgtatccg catgaatttt ccggcggtat
     6601 gcgtcagcgt gtgatgattg cgatggcatt actttgccgt ccgaaactcc tcattgcgga
     6661 tgaacccaca actgcgctcg atgtgacggt gcaagctcaa atcatgacct tattaaacga
     6721 attaaaaagc gagtttaata ccgccattat catgattact cacgatctcg gtgtggtcgc
     6781 aggaatttgc gataatgtgt tggtgatgta tgtaggcaga accatggaat acggcaccgc
     6841 tgagcaaatt ttctataccc caagccaccc ttattctatc ggcttaattg gtgcagtgcc
     6901 tcgcgttgac ggacaggaag aagaactcat tactattccg ggtaatccac ctaacttatt
     6961 acgcttaccg agtggctgtc ctttccaacc acgttgcgtt catgcaacta aacagtgcct
     7021 caaagcaccg gcgttaacct tgttaaatga tcaacgttta cgcgcttgtt ttgtccctgc
     7081 cgagcaatta atccgaggta acgcatcatg aacacagaga aaaaagtgat cctagaagtg
     7141 aaggatttaa gcgttcattt caacatcaaa gatacgaaat ctttattctt tgctaaacac
     7201 caaactttaa aggccgtcaa tcatgtctct tttcagttat acgaaggcga aaccttaggt
     7261 gtggtcggtg aatcgggctg tggaaaatca actctcgcac gcgcgattat tggcttagtg
     7321 gaaagctctg gcggtaatat tttatggcta ggtaaggagt taactcaaca aagtgcgaaa
     7381 gaatggaaaa cgatccgtag cgatattcaa atgattttcc aagatccttt agcctccctg
     7441 aatccacgga tgaccattgg cagtatcatt gccgaaccat taaaaattta ccaaccccat
     7501 ttaaccgcgg aagaagtgaa agaaaaagta cgcgcgatga tgatgaaagt gggcttatta
     7561 cctaacttaa tcaatcgcta tccacatgaa ttttcgggtg gacaatgtca gcgtatcggg
     7621 attgcgcgcg ccttgattgt ggaaccaaaa ctcattattt gcgatgagcc agtgtccgcc
     7681 ttagatgttt caatccaagc acaagtagtg aatttattga aatctttaca acgcgaaatg
     7741 gggctatcat tgattttcat tgcacacgac cttgctgtgg tgaaacacat ttccgatcgt
     7801 gttttggtca tgtatcttgg taacgcggtg gaattaggtg actatgaaca agtctatcac
     7861 gatactaagc atccttatac caaagctttg atgtctgcgg taccgattcc tgatccgcaa
     7921 ttagaacgca ataaacaaat tcaattgctt gaaggcgatc tcccttcccc gattaatccg
     7981 ccgtcgggct gtgtgttccg cacccgttgc ccactggcag atcaacactg tattgcagac
     8041 aaaccgctcc tcaaaggacg agataatcac gttgttgctt gttttaaagc cgagtaatac
     8101 acacaaccgc acaaaaaagt gcggttgttt ttttgcgaat attcacagtc agactttcgt
     8161 gatactttcg ctctgagata aggattacga tacagagaag ttattcaaca atcacacgtg
     8221 cattgatcgg ttgcactgga cgattattgt gtcctttcat caaggtcgca aacgcctcaa
     8281 cttgagattg gctaatgttg tcatagtgtt ttaacactaa ccaatttaca ccttcagaac
     8341 aaggtggtgt agttaatgac ccgctgaaac gatagtaatc gcgttttttc ggaattaatg
     8401 ttgctgggtc aaaagcggta ctaagcgtat atttctcccc tgctttttgc gggaagtttt
     8461 gccaaattgg ggctaaccat tggttttcac ttgataatac atagagcacg ccaagcacag
     8521 caagattccc ttcattgtct gcgtgtacaa aatgtgcttc catcgggaag gatttacctc
     8581 aaattaagtt ttcactcggc acatggaaat ggaattgttt aagggtaaaa gtctttccat
     8641 taagctgcat gcgattactt gcctctttga aatccacttg aatagtatgc ccattattga
     8701 caatctccac attggaaggt cgataatcca gcttaatcgg cgctaactta ccatcaatcg
     8761 tatgcttgat atctattggt gtttggtttt taccttcgcc acaaatacgg aatttgggtg
     8821 aaagttcagc ccaatgttct ggcgattcgt gtccggtgta tccccaatgc gtgtgcgttt
     8881 cttctttctt aagggggctt gtacacgctg tcaatgctaa tgcacctaac gtaagcacaa
     8941 aaaggtttga ttttttcata gcctagctcc tgattaaaag agatgaattg atgagacaac
     9001 ctaaactcaa tgatgcctta atccgagacg ctttcatctt aggcaaaaca acactccatt
     9061 tcaagtataa cttgctcaag aatatatctt agaccgaaat caaatccatt atttcaaata
     9121 aggtattagg cgagtatttc tctaaataac gacgtaaaaa atgttgtgtt tcttggctaa
     9181 tgacttgatc tgtttccgga tacaagttgt atatcacagc atgcacactt actcttttgg
     9241 agttgagtac ttgtaaactc aataaggtat gattaatact acctagcttg ccagaggtaa
     9301 ctaaaatcac ggggtattga tgctgacaaa gataatcaag ggtggtttct tcctcattat
     9361 aaggtacaca caagccgccc gccccttcca ataatacata atcatatttt tcacacaaaa
     9421 gtgcggtgca ggtttcaatt tttttacgtt cgatcgtgcg cggttctaat ttcgcggcta
     9481 aatgcggtga gcaaggataa tcaaacacgt aaggacaagt gataccttgc ttatcttctt
     9541 ctgtaagctc aataccttgt atttttcggt gtatgagtaa atcttcggca attcctcggc
     9601 agcctgtttg gatcatcttt tgcgtgatga cacttgcgcc ttgttgcatc agtttcttgg
     9661 cgtaccaacc tgtggcgatg gttttgccaa tatcggtgtc gatgccagtg ataaaaaaaa
     9721 cctttgccat actttttcct tctaagatta agttaaacgc gccagcacat acatcggcgt
     9781 gtaagtgagt tctactttgt gttgtgcgtt acggtaatgt tgttgatatt gttggcaaaa
     9841 ggcgtgcaat tgcccttttg tccacctttg ctgctgtgtg gcagtaacgc ctgtttgttt
     9901 caaatgtttt aacaccgcta agggatcatc aaagtgcaac acaatctcct cgtgttcgag
     9961 ggctaaaatc tcaaattcag gcactagcca cttttgccag tcctcaagac gtggataagt
    10021 taaccccaca ccggtgaggt gtttgatctg tgttaaattc tcgggcgtga aagtactgaa
    10081 taacaaaaat ccgtgctttt ttaagcgcac tttacaacgc gcaataaaac ccgctttatc
    10141 ttcaaaccat tgcaccacgg aagcactggc aatcaaatca tactgctgcg gaaagggaag
    10201 ttgttccgca tcgccacaat ggaagtgaaa aggttggggc aacactgatt gcagatgctc
    10261 tcgcatatcg caaaggtcat tcagctccca gtgttcaacc tgcaactgtg acattaattg
    10321 cttcgttaat ccaccagtac cacatccaat ctctaatgca cgttggaatg cttgtctgtc
    10381 gatatacgac aataaactaa gcaaacgttg gtgaatctgc tgttgtgctc tcgcttgctg
    10441 atcatagttc gatacagcgg cagaaaaacg ctgtttaatg cgtcctttat caatacgatc
    10501 catgtgctac aaccaacaag tttcccaatg ggtgaagtga ggaaacaaca aatgctcccc
    10561 tgcgatttct gttattgcac aacgatcctg ccaataagcc cgctgatttt gtgcagggaa
    10621 aattttatct tttgagccga caatcgcctt gctccacgag attaaatctg tacggtgatc
    10681 ttgttgtaaa aaggtataaa gtgcggtcag ttcagcatga atttcctgta atgtgggacg
    10741 catggaatag tgctgataat ctcttaacag cgtttttgaa ccacaaatac gacgttcaaa
    10801 tttagtccga ttatcttcat ttaaaccaga taacgtgcca gcaaaaatgg cttcgggaat
    10861 accatattgg tcatcacaag gtaagcccgt gccattgatc gccgtagcag atagcagtgg
    10921 ataaccttgc atcacacgct ccgctaccca cacgcccatt gaccatgcca ccacgcgaat
    10981 atgttgataa gcggaaaaat caacatcgca atgcagatct cgataatcat agcaaaggca
    11041 taaatcataa ttttccggca gaatcaggtg ctcgaccacg ctcggcggtg tgccccaccc
    11101 tgcaaaatag acgatcagat tgtcgccttg ctgtgaaata tgttgtgttt tcattcagca
    11161 agctcccgta aacaagcaat aaattgttcc acttccgcca cttgcatatc tgcagtcagt
    11221 gaaaaacgaa tacgagaggt tccttttggg actgtcggcg ggcgaatcgg taagcaataa
    11281 tagccttgtt gttgcaaacg ttgcgccgtt cttactgtca gttcgttatc gcccaaaata
    11341 taaggtacga tacaactttc acttggcatc gggacttgaa aaatgtcaac aatcgcttgg
    11401 cgtaaatgtt gactaagctg agcaagatgt gcgcgttcgg cttgcaaatg tggtaattgt
    11461 tgaaagacaa aatgcgtcca tgccacatta aacggcggaa gtgccgtgga aaaaatcaat
    11521 gggcgcattt tattaaccaa ataatctcgg atcacttgat cgcaaatcac ataagccccc
    11581 atagagccca acgccttgcc aaacgtaccg actaaaatat caatttggtt gatacagcct
    11641 tgttgttctg ctaaccctag ccccttctcc cccaatacgc ctatcgcatg ggcttcatct
    11701 acatataaca tcacttgcgg atagcgctgt tttaatgcga ccaactgggt gaggtctgca
    11761 cagtcaccat ccatactaaa cacggattcc gtgaccacga taatccgctc aaaagtgcga
    11821 tcattttttt gcaaaatttg ttcaaggtgg acgtaatcat gatgacgaaa acgcacaaac
    11881 tcacattgtg ccaagcgaat gccatcaatc atactggcat gtaccagttt atccgccaca
    11941 atcagcgttt ttttgtccgc taaagcaggc aaaatcccaa tattagcatg ataaccgcta
    12001 ttaaatagca aggcagtttc tcgtccaaat gcctgcgcca ttaagctttc tagctcatca
    12061 taaatcggaa aagagcctgt taataaacgg gaggaagaag aagtcaatgc agggagttga
    12121 tcttggtatt gcgtgaaaaa tgcctgacgc aaggcttcgt tattggctaa acctaaataa
    12181 tcattggagg acatattcag catcgtattg tcctcacgtt gaataaaacg ccctcggtga
    12241 attagttggg gcagttggcg aaattgattc tgcgccttta aatcagctaa ctgctgctga
    12301 taatacctga tcatagagat tccttatgtg catattcttc ttgaagggtg cgaattgtgc
    12361 catgaattaa ttgagacaat tgatccgatg agatgatata cggtggcatc aaatacacta
    12421 atttgccaaa tggacgcacc caaacgccat tttgcacaaa gcgtggtggt aaacttgcca
    12481 tattgacagg cgccttcatt tcaatcaccc caatcgctcc aagtactctc atttcagcga
    12541 cacaatctaa ggcttccgct tggcgcaatt cttgacgtaa ttgctgttca atctgttgaa
    12601 tacgttgttg ccaagggctt gccaataaca atttgatact ttctgctgct accgcacacg
    12661 ccagtggatt tgccataaac gtcggaccgt gcataaaaca ttttgcctcg ccagaacaaa
    12721 tcacgtctgc taccgcttgg ttggtaatgg tagcggatag agttaaatac ccccccgtta
    12781 aagctttacc gatacacatc acatccggca cgacattggc atgttcacaa gcaaataatt
    12841 tgcctgtacg cccaaatcct gtggcaattt catcaaaaat cagcaaaatg ccgtacggtt
    12901 cgcataaggc ttttgcttgc accaaatact caggggaata aaaatacata ccacccgccc
    12961 cttgcactac cggttctaaa attaaacccg caatctcatc accatgttgt gccaataaat
    13021 cctgtaacgg ttgcatcgct tcgggttgcc aagcttgccc aaattttacc gggggttgcg
    13081 gtaaaaaata ttgcacgggt agccctttgg caaacaagct gtgcatgccg gtcacgggat
    13141 cacacacgga catcgcatgc caagtatcac catgatagcc cgaacgaatc gtagcaaatt
    13201 tatagcgctg tgtttcgcct ttagcatgtt gatattgcac tgccattttc atcgccactt
    13261 ccacggcgac cgaaccacta tcggcaaaga aaattttatc caaactttcc ggcaagatgt
    13321 tgaccagttg ctgcgccagt tctaccgctg gttggtgcgt taatccacca aacatcacat
    13381 gactcatttg actcagttgt tgcgtggcag cgtggtttaa acgggggtga ttatagccat
    13441 gaatcgctga ccaccacgat gacatgccat caatcaactg ctgaccgttt tttaactgga
    13501 tatacacacc ttcggcacgt tctactgcaa ataagggaaa atccgcattt aacgccgcat
    13561 aagggtgcca aatatgttgt cgatcacatt ctaaaagttg ctgctcattc atcgtttcac
    13621 ctcggttgtg aatcgccctt tcaactggcg taaattcacg caaatactta cataaacgga
    13681 ataacttgtt ataatcgcca agcatttggc ttttcaagcc cattattcta acttaaaaag
    13741 atgatttatt actatgaata tattagaaaa aaaagcacaa ctgagttact ggcaacggat
    13801 taaaattgcc tttcaatatg tgatgccaca actttattta acacgtcttg caggctggtt
    13861 tgcaaaacag caatggggtg ctgtcacaca ttttgtgatt aaattattcg cgaaaaaata
    13921 ccatgtggat atgagtgaag ctgcaaaacc aaatttcagc gactatgcga gctttaatga
    13981 attttttatc cgtccattag cggacaatgc ccgtccaatt aatcaaaatc ctaccgcact
    14041 ttgtttaccg gcagatggtc gtattagtca gttaggacac attgagcagg atttattgct
    14101 acaagccaaa ggacattatt tcagcttgaa cgatttgtta gctggcgacg aggcgctcgc
    14161 tcatcatttt aaagatggcg aatttgccac cacctacctc tcaccacgcg attaccaccg
    14221 tgtgcatatg ccttgtgatg ccaccttatg caaaatgatt tatgtgccag gtgacttatt
    14281 ctcagtcaat ccatttttag ccgaacacgt gccaaactta tttgcacgta atgaacgcgt
    14341 gatctgcgta ttcgataccg aatttggtaa aatggtccaa attttagtcg gcgcaaccat
    14401 taccgcgagt atgagcaccg tgtgggcagg tgtgatcaac ccgcctcgtc cagaaaaaat
    14461 caccacctgg acctatgaag gagaaagtgc ggtcaaatta ctgaaaggac aagaaatggg
    14521 agcctttcaa ttgggctcga cggtgatcaa tttatttgaa aaagatcgtg tgcaactggc
    14581 atctcattta caagtggata gcccggtacg tatgggtgaa attcttgccc accaaaaata
    14641 atttttaacc acaataggaa aaacaatgag tcaacaattt ttcgaccaag tgtcattaga
    14701 aagccaactt gaagtgagcg ccgaagccgt cgcgaaaggg atctttgatg tgttaaatca
    14761 aaatccacca gcacttgagt taaatgaagt gagtcatgcc ctacagactt tgcaacaaca
    14821 agcgaaattc aaagaaattg aagccgttgg tgcacaattc ttagctgaaa acgcgcaaaa
    14881 agcgggggta aatactacgg aatctggttt acagtatgaa gtgttagtgg ctggtgaagg
    14941 gcaaattccg gcacgcgaag acaaagtgcg tgtgcattac actgggacat taatcgacgg
    15001 taccgtcttt gacagctcag taaaacgtgg tcaacctgca gaattcccag taaatggcgt
    15061 gatcgctggt tggattgaag ccttgtccat gatgccagtg ggttcaaaat ggcgtttaac
    15121 cattcctcac aacctcgctt atggcgaacg tggtgctggt gcctccattc cgccattcag
    15181 taccttagtg tttgaagtcg aattattagc cattctttaa agctaaacgc tagacataaa
    15241 aaagtgcggt cattttccgc acttttttat gtctagcgtt tatcgtttca agccttgctg
    15301 atagccgctg ttccacgaat ggcggaactt gtccggcaca gccttgcccg tttgttcttc
    15361 acagtaagcc gttcgttgaa tcaacatttt ttgttggtgt tctcgaaatg attttcccac
    15421 acgatagccg tccaaatacc aatcatcatt atcttgacat gccatggtat taatccgttt
    15481 tgtattcccc gtcactgcaa aagatttgcc tgcctcaata cgttgcaccg catgttcaga
    15541 gtatgaagca cagctcacca gcgaacctag tacactgaat atcaatactg ctttccaatt
    15601 catcttgtta cctttctttt tctgatttat aacacaatca tatcgtctcg gtgtaccgca
    15661 accgccccat attcataacc gagaacctgt tcgatatctt gcgaatgttt gccttgaatt
    15721 aaatggagcg catcgctgtt ataacgtggc atccctaagg caacatcctt gccttgctga
    15781 gtacgaattt ttaccacttc accgcgtgaa aagcgccctt ccacgtttac aatcccagca
    15841 ggcaataacg atttatgttg tattaacatc gcgttttccg cccccgcatc aatggtaata
    15901 ataccggctg acggcgccgc atatagccat tgtttacgac tttctaagcg atctgcttgc
    15961 acactaaatt tggtgccaat ggcttgccca taagctaagt ccacaatcac attcgggcga
    16021 ttacccggtg caataatggt ttcaatgccg gagcgggttg ccacatccgc ggcactgatt
    16081 ttggtggaca tgccacctgt gcctaacgag gtgccacttc cgcccgcaat cgcgcgaata
    16141 tgatcggtaa ttttgtccac gtcggcgatc aatttggcgt ctggatgttt gcgcggatca
    16201 cgatcaaata aaccttgctg atcagtaagc aaatacaact gttctgcttg caccaaaatt
    16261 gccactaacg cggataaatt atcgttatcg cctactttaa tttctgacgt agcgacagcg
    16321 tcattttcat taatcactgg aataatctga ttgtctaata aggcgcgcaa agtatctctg
    16381 gcatttaaaa aacgttcacg atcttcaatg tcggcacggg tcaataaaat ctgcccaata
    16441 tgaatatcat aaatggcaaa caatttttcc cacgtttgaa tgagctgact ttgtcctacc
    16501 gcagccaata attgtttcga ggcaatcgtc ggtggcaatt gcgggtgatt taaataatga
    16561 cgacctgccg caatcgcccc tgaggtaaca atcactaaac gaaagcccgc ttgatgaagc
    16621 tgtgcgagct gacgcacaat atctatcata tgaggtaaat ttaacttcgc cgatccttgc
    16681 gtaagcgtac tggttccaaa ttttacaacg agtgttttgt cgattttcat cttctctatc
    16741 ttcttatttt tgtcgcacaa aattgaagct aacttaccat taatcatcag aaaaatcatc
    16801 tcgtttactt gctattttct atgatttagc acaaattttt tctcactaaa aggcatataa
    16861 taaagtttct tgatttttca gctaggaacc cgattatgac ctcaacctct tcacaagaaa
    16921 cggagcggca acgagaaatc actcgccttt gtgttcaagt tgcccaactc ttatacaaca
    16981 tggtgcagaa agtgccatcg ttgtgcaaat ggcacatcgc ttaggcttag ccctcggtgt
    17041 agatagcgta gaatgtgccc tcacgccaaa tgccattatt cttactacat tagcccaaga
    17101 ccattgcatc acgacagtcc gtaaaaacca agacaaagga attaatatgc aagtggttac
    17161 cgaagtgcaa cgtattgtga ttacagcaga acgtaaaatc tatgatatgc aacaagtgca
    17221 tgccaaactg gctcgcatta aaccgcttaa atacaatcgc tattttgtga tgttgatgat
    17281 tggcgtatcc tgtgccagtt ttgctcattt atctggtggg gacgcactag tttcattggt
    17341 tacatttctc gccgcaacac tcgccatgta tgttcgccaa tcacttgccg caagacacta
    17401 taacccctta attgtatttg cggtgaccgc ctttgtcgcc tcactaattg cgggtatcgc
    17461 gttgaaatat aacatcggca atcagcccca aattgccttg gcatccagcg tattattgct
    17521 cgttcccggc tttccactga ttaatgcact cgccgatatt ttaaaagggc atatcaatat
    17581 ggggattgcc cgttgggcac tcgcgacaat cctcacattt ggggcatgct taggcattgt
    17641 atttgcgctg agtttattct tagaggaaat ctgtatgcta aataaattca ttcaagatga
    17701 atttctacgg ctagatcaac gttatgcagc ttggtatcaa agtgaagaaa cggatgaagt
    17761 tgccagaatg gggattcaag aaagtgagcg gattttgaaa attctgtatg cactgaaata
    17821 taacgaagac cctatgcaaa atggtttagg ctatattgca tttatggcat caaaaggcca
    17881 ataatttact tatctcaaca atttacccac cggggaaact cctcgatggc gtttccccta
    17941 ctttatagga gaaacgctat gactattaac acttatgcaa aatttgcacc taccgttttt
    18001 gttgcaaaat gctctgaatc acataccaaa ggtgaaatta ttacgctaac cagcaaatat
    18061 ggtaatgaaa ccgaggttca agtacataat cttgttaaac aagatggcga gcattatttt
    18121 tattcattta ctcgttgtga tgggatggat agtcagtcat ttgctcaaca aaaagcagaa
    18181 cgctatcaag gctatgcaga taatgcagcc aaacgtagtc aagattgggt aaatgccgct
    18241 aatgaggggt gtgatttttt gagtttaggt gagccaataa aaattggtca tcacagcgaa
    18301 aagagacacc gtaaccttat tgaacgtaat gctcgccgta tggacaatgc ggttgcagaa
    18361 atgaacaaag ctgcaagtta tgaatctcgt atcgcatatt gggaaaaaat ggcaggaaaa
    18421 attgacctgt ctatgccgga aagtctggaa tactttaagt ttgaattgga taaagccaaa
    18481 acaaagcaca aagaattgaa ggacaacccc gagaaacgag agcatggtta ttcactgact
    18541 tatgctaaaa aagcagttaa tgaacttgag aaaaaagtaa aattagctga attactttgg
    18601 gcataattat ttacaaagga gatgacgata tgaatcgaca aggtatttat attaatggca
    18661 aacaggtgtt tgattcacaa ggcgaagata ttcaaagcat tggatttttt ggctgcaata
    18721 ttcaaacggt cgtaggcata aacaaaggaa gtattttagt ctcgtccaat agtaatcaat
    18781 tattggtgaa tggacagtcg attgaattag gttctgagcc agtcctcaaa attgaggttt
    18841 tgggcaatgt gcagaaactg agtgccggtg ccgcagatgt ctctattaca ggagatgccg
    18901 gcagtgttga cacagttagc ggtgatgtct ctattaaggg aaatgttgcc tcttatgtga
    18961 aaaccgtgag tggtgatgtt cgctgtcgtg ctattaccgg ttcggtggaa accgtctccg
    19021 gtgatattta tcgctgatat ttactcatct tattatttac caccctattg ggaagcaatt
    19081 ttcccaaggt gggcagattg tttcccattt ttattttgaa tttggagaaa catgatgacc
    19141 actattaacc tttcacaaca agaacgtgag ttagttgaat ttgtctggaa taaccgtaat
    19201 acaccttggt tttttcactg tagtgtatcg aatgtgtcga gaaataatac ctctcggcaa
    19261 attgctgtat gtgtcattaa ggataatcaa ttgattagcc ttgatgaatt gatagcaaaa
    19321 ttatgtggtt ataaactcag acaaaacgga ttatacgtta ctgttcataa tatggatgct
    19381 gtttttgata ccttatatcg ctttatgtgc aagctaaatg atgagatgga ggcaaatgaa
    19441 aatgtttgcc cttatttatc attagctcac tatgaagtgt tttgattggt atcagaacta
    19501 tccaccctgt cgggaaacaa tttttccgat agggcagatt gtttcccact tttattttga
    19561 atttggagaa acataatgat agacaccttt tttgaccttg acgacacctc atgctattta
    19621 ggtaactggg aggatatact gaaagaatat gatgattgtc tttcagttga agatttttgg
    19681 cattccgcta aagaatttga taccgtacct cattttggca acctatacca ggagcgtgtc
    19741 atccttaagt tgattgctcg attctgtatt gagctgaata ttgagcaaga ttcaggttta
    19801 gtcgaatttg attattatat caatgcaata gatacgcatt tctatattaa tagccaaaga
    19861 atctgtgata tagatgattg gaatgaaatg ttagataaga ttcgtgaaga aatgacgccg
    19921 gctaaattag ttgcctaatt tttgcaaatt tttactaaaa atgacgctta ctgtcgtctt
    19981 aattcaccca cttggggaaa tatctcccca atgggatgac atttcccctc tttctgttta
    20041 g
//
LOCUS       DANLVT010000038        19619 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.038, whole genome shotgun sequence.
ACCESSION   DANLVT010000038 DANLVT010000000
VERSION     DANLVT010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19619)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19619)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19619
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.038"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            111..2720
                     /gene="adhE"
                     /locus_tag="PXC99_001145"
                     /gene_synonym="adhC"
     CDS             111..2720
                     /gene="adhE"
                     /locus_tag="PXC99_001145"
                     /gene_synonym="adhC"
                     /EC_number="1.1.1.1"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase"
                     /protein_id="HDL5417604.1"
                     /translation="MAKNTQPFDAQAEVNELVEKGLKALDEFRKLNQEQVDFIVAKAS
                     VAALDKHGILAMHAYEETGRGVFEDKATKNLFACEYVVNNMRHLKTAGVISEDDVTGI
                     TEIADPVGVVCGITPTTNPTSTTIFKALIALKTRNPIVFAFHPSAQQSSAHAAQIVRD
                     AAVAAGAPENCIQWITQPSMEGTSALMKHPGIATILATGGNAMVEAAYSCGKPALGVG
                     AGNVPAYVEKTAKLKQAVYDIVMSKSFDNGMICASEQAAIVDKEIYAEFIKEMQSYGV
                     YLVNKKEKALLEKYIFGIDKAKDENCSGAKLNSAVVGKPAAWIAEQAGFKVPEKTNIL
                     LAECAFVGEAEPLTREKLSPVLALLKSDSTEHGLELSEAMVNFHGLGHSAAIHTENKA
                     LAKTFGERVKAIRVIWNSPSTFGGIGDVYNSFLPSLTLGCGSYGKNSVGNNVSAVNLI
                     NIKRVGRRRNNMQWFKVPSKIYFERDSIQYLKSMHDVHKVMIVTDRSMVDLGFVDRIT
                     EQLRQRRNQVMIQFFTDVEPNPSLQTVQRGTELMRSFQPDTIIALGGGSPMDAAKIMW
                     LFYEQPEVDFRDLVQKFMDIRKRAFKFPQLGRKAKFVGIPTTSGTGSEVTPFAVITDG
                     DIKYPLADYSLTPTIAIVDPALVMSVPSHVAADTGLDVLTHATEAYTSILANDYTDGL
                     ALQAIKLVFENLEKSVKEFDETAREKMHNASTMAGMAFANAFLGICHSMAHKIGGKFH
                     TIHGRTNAILLPHVIRYNGTRPTKVATWPKYTNYVADVRFQDIARMLGLPAETPEQAV
                     EAYAQAVHDLAVRCGVKMSLREQGVDEQAFLNARRELALHAFEDQCTPANPRLAMIED
                     MEAIMTKAYYGKE"
     gene            2867..3763
                     /locus_tag="PXC99_001146"
     CDS             2867..3763
                     /locus_tag="PXC99_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HDL5417605.1"
                     /translation="MQITILDGGISRELMRRNAPFHQPEWSAAALYEGPHFVQAVHED
                     FIAHGAEVITTDSYAVVPFHIGEKRFAADGKMLADLAGRLAKQAVKNSGNIATQIAGS
                     LPPMFGSYRADLIQMERFAEVAQPLIDGLSPYVDIWLCETQSAIIEPISIKALLPKDN
                     RPLWVSFTLTDDEPTTEPQLRSGESVKQAVEEMVKLGVQAILFNCCQPEVIGEALSVT
                     QKTLAELKATHIRTGAYANAFAPQPKDATANDGLDEVRQDLTLEAYLGWAKKWTEQGA
                     TIIGGCCGIGVEYIETLAKNLK"
     gene            3773..5182
                     /locus_tag="PXC99_001147"
     CDS             3773..5182
                     /locus_tag="PXC99_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HDL5417606.1"
                     /translation="MSNKKIGLISLTALVLSSMIGSGIFSLPQNMAAVAGAEAITIGW
                     LITGVGIIFLGLSFFFISRLRPDLDGGIYTYAREGFGELMGFMSAWGYWLCATIGIVG
                     YLTVAFEGLGVFTDNPNTVIFGQGNTLASFIGSSIIVWLVHALIAGGIKEAAFVNLIA
                     TFVKVAPLILFIGLGIWYFDVDLFNSDVKATALNNSVSDQVKSTMLITLWVFTGVEGA
                     SVLSAHAKKRSDVGLATVLGIIIALALYVAITILSLGILPRETIANMANPSMGPLLDA
                     MMGPTGKVIITACLIVSVLASYISWTMYSAEVPYRGSKNGAFPKILDKVNKNGTPINS
                     LWFTGFIVQFCLVLVFVFEQSYNTLLLISTSMILIPYFLIGAYLFKLAIQTNATWYIK
                     LTGFMAALYGLWIVYAAGLEYLLLSVVLYVPGILLFLYSNYKFNGRLTLSTAEKVILI
                     VLLVIFGYAVIELPALLAA"
     gene            5289..6512
                     /locus_tag="PXC99_001148"
     CDS             5289..6512
                     /locus_tag="PXC99_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF711 family protein"
                     /protein_id="HDL5417607.1"
                     /translation="MQTYQHKALCRVRTITLFLSLTKDKLQWETALNAAKAEFDLLVP
                     AIQTQGYHIQSIRIVTNSFGEYLDLTNIETAKQDLAYLKQLLTQLNDSGLRIRFAIGE
                     AKTPHELALLPELILNYGDLSNACVNIEPDEFGILDNETILQSAQIIKQIAEITPRGE
                     GNFNFTVNFNCKPFIPYFPASYHSSKLPNSFVIGLETPDLLVAVLKELKASPHNDFYR
                     QCYETMSQALQYHVDEVLEAVKSVQHKLQFAFAGIDSSAAPSKNCASMTEVYELMGVP
                     FFGAAGTVEASSLLTKVFKSIKHVPLVGFSGLMLAVTEDLGLAAGTHKAQFDIRALLT
                     YSAVCGIGLDTVPISNEATVEQIAALMRDTGTMAFRLNKPLTVRLFPIPNKSAGEVTE
                     FESDDLCNCRILAVP"
     gene            complement(6550..7746)
                     /locus_tag="PXC99_001149"
     CDS             complement(6550..7746)
                     /locus_tag="PXC99_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HDL5417608.1"
                     /translation="MKQVIRFIVFSTLSLFSFSTFAKTIVAIDAGHGGKDPGAIGKNL
                     GILEKSVTLAISKELKALLDADPNFKAVMTRSGDYFIQLPQRTEIARKHRADLLVSIH
                     ADSSPRGDSLKGASVWVLSNSRASDEMGKWLEDHEKQSELLGGAGSVLSSNNERYLNQ
                     TVLDLQFSHSQRAGYELGKSILAKMSNVAALAKSSPQHASLSVLRSPDIPSVLVETGF
                     LSNSTEEAKLASANYRKQVARAIYNGLVAYRAKNAVASSSVSKKSDKEDKQNKKEEKT
                     AKADLTKKPASEKQEKNTQSDKTKLKEKSKKEDKKEDSAKTNKKKEQQLKEKTALEKD
                     QKNQSKKSDSQREIKVSNSGYHIVQQDETVYSIARAYGTTPQKISELNNLKNYQITVG
                     KKLKVK"
     gene            complement(7766..8257)
                     /gene="tsaE"
                     /locus_tag="PXC99_001150"
     CDS             complement(7766..8257)
                     /gene="tsaE"
                     /locus_tag="PXC99_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HDL5417609.1"
                     /translation="MTDSLSFYCEDETKLLEFGQSFALELKKYLLQDQAHSLVVYLNG
                     ELGAGKTTLTRSIVRAFGHQGNVKSPTYTLVEEYQLPPFSLYHFDLYRLADPEELEFM
                     GIRDYFKPQTLCLLEWAVKGKGMIPEADFVIQIDYKNDGRQISLLPQNQTAVDILVNF
                     HQK"
     gene            complement(8257..8811)
                     /gene="orn"
                     /locus_tag="PXC99_001151"
     CDS             complement(8257..8811)
                     /gene="orn"
                     /locus_tag="PXC99_001151"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HDL5417610.1"
                     /translation="MAQNEQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGP
                     VLAVHQTDDLLEKMSDWCVKTHTANGLIERVKASKLTERAAELQTLDFLKRWVPKGAS
                     PICGNSIAQDKRFLYKYMPDLADYFHYRHLDVSTLKELARRWKPEILDKFSKGNTHLA
                     LDDIRESINELKFYREHFIQLDQK"
     gene            complement(8821..9300)
                     /gene="coaD"
                     /locus_tag="PXC99_001152"
     CDS             complement(8821..9300)
                     /gene="coaD"
                     /locus_tag="PXC99_001152"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HDL5417611.1"
                     /translation="MSYNVIYAGTFDPITNGHLDIICKASHLFGKVIVAVAQNPSKQP
                     LFSLEERVELVKQSCTQWQNIEVIGFSGLLADFAKQQNAKALIRGIRGADDIDYEIQL
                     AQLNYKLSGDLETIFFPPSIEWRYLSSTMVREIYRHNGDISQFVPQAVKNALKIAKV"
     gene            complement(9302..10582)
                     /gene="waaA"
                     /locus_tag="PXC99_001153"
     CDS             complement(9302..10582)
                     /gene="waaA"
                     /locus_tag="PXC99_001153"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HDL5417612.1"
                     /translation="MLRLLYICLSYLLQPVVLLLMWYKGRKQPAYRKRLWERYGIYDE
                     SEKPKAKGVVIHAASVGEVIAATLLIKAVSKQYPELPLIVTTVTPTGSGRVQAAFGNS
                     VSHFYLPYDLPDAIERFLNFIDPKLMIVIETELWPNLIRKVNIRKIPFVIANARLSPR
                     SAKRYGWVKGSIKDMLNQISLIMAQDEVSRDRYLALGYAPAKMVNTGNLKFDLEITPQ
                     LHQSVIKTKASLNLTERPIWIAGSTHEGEEKLILDAHKLLLEHYPNLVLILVPRHPER
                     FGLVELLIQKSDLNYVKRTENKTLSQNTQVMLGDTMGEMMLLYGLSDIAFVGGSLVKH
                     GGHNPLEPIAFNIPVVSGLYTYNFPEIFEKLREVKGVIEIESSVEALTESIQLLLKQP
                     QIGQEIAKSGLSVLQENQGALKRHLDLLASYLEK"
     gene            complement(10762..12141)
                     /gene="yegQ"
                     /locus_tag="PXC99_001154"
     CDS             complement(10762..12141)
                     /gene="yegQ"
                     /locus_tag="PXC99_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-hydroxyuridine modification protein YegQ"
                     /protein_id="HDL5417613.1"
                     /translation="MTLKYAKPELLSPAGSLKNMRYAFAYGADAIYAGQPRYSLRVRN
                     NEFNHANLKVAIDEAHALGKKFYVVVNIAPHNSKLKTFIKDLKVVVDMKPDALIMSDP
                     GLIMLVRENFPEMDIHLSVQANAVNWATVKFWRQMGLTRVILSRELSLEEIEEIREQV
                     PDMELEIFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYKMEEGKIDEVGQI
                     VPKYEPEIEVKNVAPTLGNGEATDKVFLYTESQRPDEQMTAFEDEHGTYFMNSKDLRA
                     VQHVERLTQMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAAAGKPFDESLMDTLESL
                     AHRGYTEGFLRRHTHDEYQNYEYGYSISERQQFVGEFTGKRNAEGLAEVAVKNKFLVG
                     DSVEMMTPKGNIVFKIERMLNRKNENVDAALGDGHFVFLDVPADIELDFALLMRNLVN
                     TNTRNPHQA"
     gene            12269..12640
                     /locus_tag="PXC99_001155"
     CDS             12269..12640
                     /locus_tag="PXC99_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417614.1"
                     /translation="MKLKYLLATTLLAFSTFTAAQSIKTEMMQMNMQANKLMRAESAE
                     EFSEIANDFIIITEKTKGIFPNSVEGDKAAQEDYQAGMQKLIDMVNQASEKAQAGELQ
                     EAKMLISELEMIKREYHKKYK"
     gene            complement(12679..16155)
                     /gene="dnaE"
                     /locus_tag="PXC99_001156"
     CDS             complement(12679..16155)
                     /gene="dnaE"
                     /locus_tag="PXC99_001156"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HDL5417615.1"
                     /translation="MSDCRFVHLKVHSDFSMINGLAKVKSLVKTAAANNMVAMGLTDF
                     INFCGLVKFYGEALGAGIKPIIGADVYVRTESGNEDYFELTLLAKNNKGYHNITQILS
                     KAYQQGYVEFPMVEREWLAELNEGIIILSGGRMGDVGKALLKENRQEAEEKLAFYQQY
                     YPNHFYLSVCRTGRADEERYIKQAVEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAI
                     HDSYTLDDPKRPKKYSPKQYFRTEEEMCKLFADLPSALANTVEIAKRCSVTVRLGEYF
                     LPNFPTGELSTEDFLVKKSKEGLEERLEFLFPDPEERANKRSVYDERLQVELDVINQM
                     GFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLN
                     PERVSMPDFDVDFCMDGRDRVIEHVAETYGRQAVSQIITFGTMAAKAVIRDVGRVLGH
                     PYSFVDRISKLIPPDPGMTLEKAFAAEPKLPELYEADEEVKDLIDMARKLEGVTRNAG
                     KHAGGVVIAPTAITDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKW
                     ALEMINERLAREGKEPIRIETIPLDDKKSFALLLAAKTTAVFQLESRGMKDLISRLKP
                     DCFEDIIALVALFRPGPLESGMVQNFIDRKHGKEEVSYPDPQYQHECLKPILEPTYGV
                     IVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEEMAAQREVFEKGAEAKGIDGKLA
                     GQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVG
                     FYDECMNMGLTVVPPDVNSGKHRFSVNEKGEIVYGLGAIKGVGEGPIEAILAARQKEG
                     KFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAALMKNLEDALKASDQHAKM
                     EELGQSDMFGVLTETPEEVQNAYANTPKWSEQVILDGERATLGLYLSGHPIGRFLKEL
                     SHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVTKRGSRIGIATIEDRSGKLDITLFS
                     EALENFGHLMQQDQIIVATGSVQFDDFSGGLKMSAREVLSLDEARGRFAKSLALAISK
                     EQLSADFIKKMTAIITPHKEGTLPLHFYYQSPEGRVLLKGGVEWRISPNEAMFSELKA
                     LLGENSVELEFE"
     gene            complement(16380..17477)
                     /gene="lptG"
                     /locus_tag="PXC99_001157"
     CDS             complement(16380..17477)
                     /gene="lptG"
                     /locus_tag="PXC99_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HDL5417616.1"
                     /translation="MQFFSMNILERYIGKTILSAIFLTLFMLIGLGAIIKFVEEFRDV
                     GRGSYDGLKAAYYTFLTIPRDIETFFPIAALLGSLLGLGNLASLSELVVMQASGFSRF
                     RIGLAVMKTALPLVIFTMIIGEWGVPQTEQFARNMRSIAQSGGSMLATKDGFWAKDGN
                     SFIYINHIKNEKSLDNVLIYQFGEGQNKRELQSVLKARTANYSDEKGWVLSKVEKSTV
                     GENQIQQAKQPDQVWQTSLTPSKLGIVSLKPESLSISGLADYVGFLKDTGQDPKRFEI
                     TFWRKVFQPISMAVMMLLAISFIFGPLRSSTMGAKIVIGIVAGFMFYVANIVFGNLSL
                     IATWLPIPVGALIPSLLCLIIVWWLLSKKRD"
     gene            complement(17477..18586)
                     /gene="lptF"
                     /locus_tag="PXC99_001158"
     CDS             complement(17477..18586)
                     /gene="lptF"
                     /locus_tag="PXC99_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HDL5417617.1"
                     /translation="MILSRYLTKEIFKSQLAILFILLLIFFCQQLVRVLSSAVSGKVP
                     ADLVVSLLGLGMPTMAQLMLPLSLFIALLLTLGRFYAESEITVMRACGIGQGLLVKVA
                     MFLSIFTTALAVYNVFWLTPWAINKQSEMLAEAKANPRFAALSAGQFMSAGGYVLFID
                     KIENNSLNDIYVFQPEQQKKNKPSVVVAESGTLQGLPNGDQVLTLAESKRFEGTPQSA
                     DFRISHFENYSAYLGYQDVESDEKLVQRADFKKLMETKTPEAKAELHWRLALILAVPL
                     MALLAVPMSSVNPRQGRFAKLLPALLLYLIYFLLQSSLKSSGASGKLNAEVLMPLVSV
                     AFLVLGVILNAWDSKFMSKLRYQFGAKKLTNKAVA"
     gene            complement(18760..19557)
                     /locus_tag="PXC99_001159"
     CDS             complement(18760..19557)
                     /locus_tag="PXC99_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417618.1"
                     /translation="MRFWGKTFVVGLIGLGTQNTIFANDDAQISRYEQAKLRLSYDGN
                     VGNLLQQLSQRLKVGFIAYDVDITRKISLQNETETAIKTINEQIESQLTNIDVRFEKI
                     GERLFLVVSAKDVAPLLQNEPKEVQFVGDVIFDGEPNLTEQAQSTAEATKVQNILNIA
                     TNQEKIMAAKGKKAPQYKTVTKDNIGLKNIRVTALGTFLVFDTSVDAAKLRVKGNFED
                     IAQGENIIAILHQNTEAPPKIEIEDSQGKKLILEAHKATSSKKSKKQ"
BASE COUNT         5621 a         4455 c         3805 g         5738 t
ORIGIN      
        1 caaagcaaac ataaaacatt attaattttt aacgacaaaa taactctttt gggtaataat
       61 ttcatcagtt aaaaaaatta tcaaatttaa attttatgag gaaccaaact atggctaaaa
      121 atacgcaacc atttgatgcc caagcagaag tgaatgagct tgttgaaaaa ggcttaaaag
      181 cccttgatga gtttagaaaa ctcaaccaag aacaagtgga ttttattgtc gctaaagcct
      241 ctgttgctgc ccttgataaa cacggtattt tagcaatgca cgcttacgaa gaaaccggac
      301 ggggtgtgtt tgaagacaaa gccactaaaa acctgttcgc ctgtgagtat gttgtcaata
      361 atatgcgaca tttgaaaacc gcaggggtca ttagtgaaga tgatgtcacc ggtattaccg
      421 aaattgccga ccctgtcggt gttgtctgcg gtatcacccc aaccaccaac ccaacctcaa
      481 ccaccatttt caaagcgtta atcgccctta aaacccgtaa ccctatcgtt tttgctttcc
      541 acccgtctgc tcaacaatct tctgcccacg ctgctcaaat tgtgcgtgat gctgccgtgg
      601 ctgccggtgc accggaaaac tgtattcaat ggattaccca gccttcaatg gaaggtacat
      661 ctgctttaat gaaacacccg ggcattgcaa ctattttagc caccggcggt aatgcaatgg
      721 ttgaagccgc ttactcttgc ggcaaaccgg cattaggagt tggtgcaggc aacgtaccgg
      781 cttatgtaga aaaaaccgct aaattaaaac aagcggtgta tgacattgta atgtcaaaat
      841 ctttcgacaa cggtatgatt tgtgcctctg aacaagcggc gattgtagat aaagaaattt
      901 acgctgagtt tattaaagag atgcaatctt acggcgtcta tttagtgaac aaaaaagaga
      961 aagccttatt ggaaaaatac attttcggta ttgataaagc caaagatgaa aactgctcag
     1021 gtgcaaaact caattcagcg gtggttggca aaccggctgc gtggattgca gaacaagccg
     1081 gctttaaagt accggaaaaa accaatattc tgttagccga atgtgccttt gtgggcgaag
     1141 ctgagccact tacccgtgaa aaactttcgc ctgtactggc tctgttaaaa tccgactcca
     1201 ccgaacacgg tttggaattg tctgaagcga tggtgaattt ccacggttta gggcatagtg
     1261 ccgccattca taccgaaaac aaagccttag ccaaaacctt tggcgaacgg gtaaaagcca
     1321 ttcgggtgat ttggaactca ccatcaacct ttggcggtat cggtgatgta tataactcct
     1381 tcctgccatc gcttacgctg ggctgtggtt cctacggtaa aaactctgta ggtaacaacg
     1441 ttagtgcggt gaatttaatc aatatcaaac gtgtgggcag acggagaaat aatatgcaat
     1501 ggtttaaagt gccatcaaaa atctactttg agcgtgactc aattcaatat ttgaaatcaa
     1561 tgcacgatgt gcataaagta atgatcgtaa ccgaccgctc aatggttgat ctcggctttg
     1621 tggatagaat taccgaacaa cttcgccaac gtcgcaacca agtgatgatt cagttcttta
     1681 ccgatgttga accaaaccca agcctgcaaa ccgtacaacg tggtacagaa ttaatgcgta
     1741 gcttccagcc tgatactatc atcgcacttg gtggtggttc accaatggat gcagccaaaa
     1801 ttatgtggtt attctacgaa caaccggaag tcgatttccg tgatttagtg caaaaattta
     1861 tggatatccg caaacgtgca ttcaaattcc cacaattagg cagaaaagcg aaatttgtcg
     1921 gcattccaac cacctccgga acaggctctg aagtcacacc gtttgcagta attaccgatg
     1981 gcgatattaa atatccgctc gctgactact cgcttacccc aaccattgcg attgtcgatc
     2041 ctgcgttagt aatgtctgtg ccgtctcacg ttgctgccga caccggttta gacgtattaa
     2101 ctcacgctac cgaggcttac acatcgattt tagccaacga ctataccgac ggcttagcct
     2161 tgcaagccat taagttagtg tttgaaaact tggaaaaatc ggtcaaagag tttgatgaaa
     2221 ccgcccgtga aaaaatgcac aatgcttcca caatggcagg gatggcattt gccaatgcct
     2281 tcttaggtat ttgccactca atggcacaca aaatcggggg taaattccac accatccacg
     2341 gtcgaaccaa tgcgatttta ctgccacacg ttattcgcta taacggcaca cgcccaacca
     2401 aagtggcaac ttggccaaaa tacaccaatt atgtcgcaga tgtgcgtttc caagatattg
     2461 ccagaatgct tggcttaccg gcagaaaccc cggaacaagc ggtggaagct tacgcccaag
     2521 cggtacacga tttagccgtt cgttgcggcg tgaaaatgtc gcttcgtgag caaggcgttg
     2581 atgagcaagc cttcttgaat gcccgccgtg aacttgccct acacgcattt gaagaccaat
     2641 gcacaccagc aaacccacgt ttggcaatga ttgaagatat ggaagcgatt atgactaaag
     2701 cctactatgg caaggaataa agcacaattt aatcgttaaa cttactaaat ggccgcttgc
     2761 aagcggtcat ttttcttgaa atttttactt ttcccttcac aaaatacttt cgctctttta
     2821 caaagcatag tatttttatc gctcctttta tcttacagga aatactatgc aaattacgat
     2881 tttagacggc ggaattagcc gtgaattaat gcgtcgcaat gctccatttc atcagcctga
     2941 atggtctgct gccgctttgt atgaaggccc acattttgtg caagcggtac acgaagattt
     3001 tatcgctcac ggggcagaag tgattactac cgacagctat gcggttgtgc cgtttcacat
     3061 tggcgaaaaa cgctttgcgg cagacggcaa aatgcttgcc gatttagccg gtcgccttgc
     3121 caaacaagcg gtcaaaaatt caggaaatat tgcaactcaa attgcaggct cacttccacc
     3181 aatgtttggc tcttaccgtg ccgatttaat tcaaatggaa cgctttgctg aagtcgctca
     3241 gcctttaatt gacgggcttt cgccttatgt ggatatttgg ctttgcgaaa cccaaagtgc
     3301 gattattgag ccgatttcca tcaaagcatt attgccgaaa gacaaccgcc cgctttgggt
     3361 ctcttttacc ctcaccgatg atgaaccaac caccgagcca caacttcgct cgggcgaaag
     3421 cgttaaacaa gcagtcgaag aaatggtgaa gttaggcgtg caagcgattt tatttaactg
     3481 ctgtcagcct gaagtgatcg gcgaggcatt aagtgtaacc caaaaaactt tagccgaatt
     3541 aaaagctacc catattcgca caggagctta tgccaacgcc tttgctccac aaccaaaaga
     3601 tgccaccgcc aatgacggtt tagatgaagt tcgccaagat ttaaccctgg aggcttattt
     3661 aggctgggca aaaaaatgga cggaacaagg ggcaactatt atcggtggct gctgcggcat
     3721 tggggttgag tatattgaaa cgctggcaaa aaatttaaaa taaggaaatc gaatgtcaaa
     3781 taaaaaaata ggattaattt cactcaccgc cttagtgcta agctcaatga ttggctcggg
     3841 gattttcagc ttaccgcaaa atatggcagc cgttgccgga gcagaagcca ttaccattgg
     3901 ctggctgatt accggtgtcg gcattatctt tttaggttta tcgtttttct ttatttcccg
     3961 cttgcgtccg gatttagacg gtggcattta cacctacgca cgggagggtt ttggcgagct
     4021 gatgggcttt atgtcagcgt ggggctattg gctctgtgcc accattggga ttgtaggata
     4081 cctcaccgtt gcttttgaag gtttgggtgt atttaccgac aacccgaaca ccgtgatttt
     4141 cgggcaaggt aacaccctcg cctcttttat tggatcttca atcattgtgt ggctggttca
     4201 cgccctcatc gcaggcggta tcaaagaagc tgcctttgta aacttaattg ccacttttgt
     4261 gaaagtcgct ccgctcattc tgtttatcgg gttaggcatt tggtatttcg atgtggatct
     4321 gtttaatagc gatgttaaag ccaccgcact taataatagt gtaagcgacc aagtgaaaag
     4381 cacaatgtta atcaccttat gggtatttac cggtgtggaa ggggcttctg tgctgtcggc
     4441 tcacgcgaaa aagcgttctg acgtgggact ggcaaccgta ttaggtatta ttattgcact
     4501 tgctctttat gtggcaatta ccattctttc actcggaatt ctgccacggg aaactattgc
     4561 caatatggca aatccgtcaa tggggccgtt gctcgatgca atgatgggcc caaccggcaa
     4621 agtgattatt actgcttgtt taattgtatc ggtgcttgcc tcttacatta gctggacgat
     4681 gtattcggca gaagtgcctt atcgtggctc aaaaaacggg gctttcccga aaattttaga
     4741 caaagtgaat aaaaacggca cgccgattaa ctcactctgg tttaccggct ttatcgtgca
     4801 attttgcttg gtgttggtgt ttgtttttga gcaaagctat aacaccttat tgctgatttc
     4861 cacctcgatg attttaattc cctatttctt aatcggggct tatttattca aattagcgat
     4921 tcaaaccaac gccacttggt acattaaact caccggcttt atggcagccc tttacggatt
     4981 atggattgtc tatgccgcag gactagaata tttgctgctt tcggtggtgc tttatgtacc
     5041 cggaatttta ctcttcctct actccaacta taaattcaac ggcagattaa ccctttcaac
     5101 cgctgaaaag gtcatcttaa tcgtgctact ggtaattttt ggctatgccg tgattgagct
     5161 gccagcacta ttagcagcat aattcccatc aaaaatgacc gcttgcaagc ggttattttt
     5221 ctaggatctt ctgcaaagat tcattagaat agaaacaacg tcaataataa ataaaaagag
     5281 gagaaacaat gcaaacttat caacataaag ccctttgtcg ggtaagaacc attacccttt
     5341 ttctgagttt aaccaaagat aaattgcagt gggaaacggc attaaatgcg gcaaaagcag
     5401 aatttgatct attagttccc gctattcaaa cacaaggcta tcacatacaa tcgattcgaa
     5461 tcgttaccaa cagtttcggg gaatatcttg atctcactaa tattgaaaca gcgaaacagg
     5521 atttagccta tcttaaacag ctattaaccc aacttaacga tagcggttta cgcattcgct
     5581 ttgccattgg tgaggcaaaa acaccccacg aattagcatt actacctgag ctgattttaa
     5641 attatggtga tttatctaac gcttgtgtca atattgaacc cgatgaattt gggattttag
     5701 acaatgaaac cattttacaa tctgctcaaa ttatcaaaca aatcgctgaa attaccccaa
     5761 gaggtgaagg caattttaat tttacggtga attttaactg taaacctttt attccttatt
     5821 ttccggcaag ctaccattca agcaagctcc ctaacagttt tgtgataggc ctagaaacac
     5881 cagatctatt agtagcggtg ttaaaagagc tgaaagccag cccacataac gacttttatc
     5941 gccaatgcta tgaaacgatg tctcaagcct tgcaatatca cgttgatgaa gttctcgaag
     6001 cagtaaaatc ggtacaacac aaattacaat ttgcctttgc tggcattgat agttctgctg
     6061 ctccgtcaaa aaactgtgcc tcaatgacag aagtttatga attaatgggc gtaccatttt
     6121 ttggggcagc cggaacagta gaagcctctt cacttctgac aaaagtcttt aaatctatca
     6181 aacatgtacc gcttgtcggt ttttcaggtt taatgttggc agtaaccgaa gatttaggct
     6241 tagccgcagg cacacacaaa gcccaattcg acattcgtgc tttactaact tatagtgctg
     6301 tttgtggcat tgggttagat accgtaccga tttccaatga agccactgtt gaacaaattg
     6361 ccgcattaat gcgagacacc ggcacaatgg catttagact aaataaaccg cttacagtac
     6421 gtttatttcc aattccgaat aagagtgctg gggaagtgac agaatttgaa agtgatgatt
     6481 tatgtaactg ccgaatttta gctgtacctt aaaataaagg ctgatggata tttccatcag
     6541 cctttcaatt tacttcacct tcaatttttt acctaccgtg atctgataat ttttcaaatt
     6601 attcagctca ctgatttttt gcggcgtagt accgtaagct ctagcaatcg agtaaaccgt
     6661 ttcatcttgt tggacaatat ggtagccact gttagacacc ttaatttctc tttgagagtc
     6721 tgatttttta gactgatttt tttgatcttt ctcaagagct gttttttctt ttagttgctg
     6781 ctcttttttc ttattggttt tagccgaatc ttctttttta tcctcttttt tgctcttttc
     6841 tttcaatttt gtcttatctg attgcgtatt cttctcttgt ttctcagaag caggcttttt
     6901 agttaaatca gctttagcag ttttttcctc tttcttattt tgcttatctt ctttgtccga
     6961 ttttttactg accgaagaac tagcaactgc attttttgcc cgataagcga ctaatccatt
     7021 ataaatggcc cgagcaactt gtttacgata atttgcactg gctagctttg cttcctcggt
     7081 tgaattagat aaaaatcccg tttccaccaa tacagatgga atatcaggtg aacgcagaac
     7141 acttaagctt gcgtgctgag gagacgattt tgctaatgca gccacatttg acattttagc
     7201 taaaatgctc ttgcctaatt catagccggc acgttgagag tgagagaact gtaaatcaag
     7261 cactgtttga tttaaataac gttcattgtt gcttgaaagc accgaaccag ccccgccaag
     7321 taattccgac tgcttctcgt ggtcttccaa ccatttaccc atttcatcgc tagcacggct
     7381 attagaaagt acccaaaccg aagccccttt caaggaatcg ccacgaggcg aagagtctgc
     7441 gtgaatagaa accagcagat cggcacgatg cttacgggca atctcggtac gttgcggtaa
     7501 ttggataaaa taatctcccg agcgtgtcat cactgcttta aaattaggat cggcatctaa
     7561 caaggctttt agctctttag aaattgcgag ggtaacgctt ttttccaaaa tccccagatt
     7621 tttaccaata gcccccggat cttttccccc gtgtccggca tcaatcgcca caatggtttt
     7681 ggcaaatgtg gaaaaactga ataaactcaa tgtgctaaaa acaataaatc tgataacttg
     7741 cttcattacc ttccctacaa gcggtctatt tttgatgaaa atttactaat atatctactg
     7801 cagtttgatt ttgcggcaac aggctaatct gccgtccgtc attcttataa tcaatttgga
     7861 tcacaaaatc agcctctgga atcattcctt tacctttaac tgcccattca agcaaacaaa
     7921 gcgtttgtgg tttgaaataa tcacgaattc ccataaactc cagctcttca ggatcggcta
     7981 agcgatacaa atcaaaatgg taaaggctga aaggcggaag ttggtattct tccaccagag
     8041 tataagttgg gctttttaca ttgccttgat gcccgaaagc ccgtacgatc gagcgggtta
     8101 aggtggtttt acctgcccca agttcgccgt ttaggtaaac aaccagcgaa tgagcttggt
     8161 cttgcaataa atatttctta agttctaacg cgaatgattg accaaattcc agcaatttag
     8221 tttcatcttc gcagtaaaaa gagagagaat ctgtcattat ttttggtcta gctgaataaa
     8281 atgttcccga taaaatttca attcgttaat ggattcacga atatcgtcca acgctaaatg
     8341 cgtattgcct ttactgaatt tatctaaaat ctccggtttc caacggcgtg ccagctcttt
     8401 taaagtactc acatctaagt ggcgataatg gaaataatcg gctaaatcag gcatatattt
     8461 atacaaaaaa cgtttatctt gagcaatgct gttgccgcaa atcggagaag cgccttttgg
     8521 cacccagcgt tttaagaagt ctaaagtttg caactctgct gcccgttcag tcaatttgct
     8581 cgctttcact cgttcaatca gcccgttagc ggtatgggtt ttgacgcacc aatcactcat
     8641 tttctctaat aaatcatcgg tttggtgtac cgcaagtacc ggtccttccg ctaaaatatt
     8701 taaatcctta tcggtcacaa tggtggcgat ttcaataatg cgttcttttt ccggatctaa
     8761 ccctgtcatt tcaagatcga tccaaattaa attttgttcg ttttgagcca ttttatttcc
     8821 ttacactttt gcaattttta gggcattttt gaccgcttgc ggcacaaatt ggctgatgtc
     8881 accattgtgg cgatagattt cccttaccat cgttgaagaa aggtaacgcc attctattga
     8941 agggggaaaa aaaatagttt ctaaatcgcc cgataatttg taatttaact gagcgagttg
     9001 gatttcatag tcaatatcat ctgccccacg aataccacgg attaacgctt tggcattctg
     9061 ctgtttggca aagtctgcta acaatccact aaagccaatc acctcaatat tttgccactg
     9121 ggtacagctt tgtttaacaa gctccactcg ttcttcaaga ctaaaaagcg gctgcttgct
     9181 tgggttttga gcaacggcaa caatcacttt tccaaataag tgagaggctt tgcaaattat
     9241 gtccaaatgc ccattggtaa tgggatcaaa ggtgcctgca taaattacgt tataactcat
     9301 tttatttctc taaataggag gctaataaat ccaaatggcg ttttaatgcc ccttgatttt
     9361 cctgtaacac gcttaagccg gattttgcaa tttcttgtcc gatttggggc tgcttaagca
     9421 ataattgaat gctctcggtc aaagcctcga ctgaactttc aatttcaatc acgcctttca
     9481 cctcacgcaa tttctcaaag atttcaggga aattataggt gtaaagccca gaaaccaccg
     9541 gaatattaaa agcgattggt tcaagtggat tatgcccacc gtgtttgacc aaactgcctc
     9601 ctacaaaagc aatgtcagac aacccataca gtaacatcat ttcccccatt gtatcaccta
     9661 acattacttg agtattttgg cttaacgttt tattctcagt acgttttaca taatttaaat
     9721 ctgatttttg aatcagtagc tcaactaaac caaaacgctc cggatggcga ggcactaaaa
     9781 tcaacactaa attcgggtaa tgctctaata agagtttatg agcatctaaa atcagcttct
     9841 cttccccttc gtgagtactg ccggcaatcc aaatcggtct ctctgttaaa ttcagactag
     9901 ctttagtttt aatcaccgat tgatgaagct gtggcgtaat ttctaaatca aatttcaggt
     9961 taccggtatt aaccattttt gccggtgcat aaccgagtgc taaatagcga tctcggctta
    10021 cctcatcttg agccataatc agactaattt ggttgagcat atccttaatg ctacctttta
    10081 cccagccata acgcttcgca gaacgtggcg ataagcgggc attggcaatc acaaatggaa
    10141 ttttacgaat atttacttta cgaattaaat tcggccaaag ttcggtttca attacaatca
    10201 tcaatttcgg atcgataaaa ttcaaaaacc gctcgatagc atcaggtaag tcataaggca
    10261 aataaaaatg tgaaacacta ttaccaaaag cagcttgcac acgcccagag cctgttggcg
    10321 ttaccgttgt gactatcaac ggaagttcag gatattgctt gctgactgcc ttaatcaaaa
    10381 gcgttgcagc aatcacctca ccaaccgatg ccgcatggat taccacccct tttgctttcg
    10441 gtttttccga ttcgtcataa atcccataac gctcccataa acgtttccga taagccggtt
    10501 gtttacgccc tttgtaccac attaatagca gaaccacagg ctgtaataga taacttaaac
    10561 aaatatagag taaacgtagc atttattttc cttataccat aaccctcacc tcttgtggga
    10621 gagagtcaaa tacgccaata aatcgttcct ctcttgttcg agagggggga acaagcggtt
    10681 atttttacca aaaattttgc aatctatatc ctcaaagaca aaaccacgga ataaccttaa
    10741 tccgtggttt atctcgcatc attacgcttg atgtggattg cgggtattcg tattcactaa
    10801 gttacgcatt aaaagtgcaa aatccaactc aatatctgcc ggcacatcta aaaagacaaa
    10861 atgcccgtca ccgagtgctg cgtccacatt ttcatttttg cggttaagca tacgctcgat
    10921 tttaaataca atgttgcctt taggggtcat catttccact gaatcgccca ctaagaattt
    10981 gtttttcact gccacttccg ccaagccttc tgcattgcgt ttgccggtaa attcgcccac
    11041 aaattgttgg cgttctgaaa tcgaatagcc atattcatag ttttggtatt catcgtgagt
    11101 atgacgacgt aagaagccct ctgtataacc acggtgtgca aggctttcaa gagtatccat
    11161 taaactttcg tcaaacggtt taccggcagc ggcatcatca atcgccttac gatacacctg
    11221 agccgttctc gcacagtaat agaacgattt cgtacgcccc tcaattttca gtgaatgcac
    11281 ccccatttga gttaaacgct caacgtgttg tactgcacgc agatctttag agttcataaa
    11341 ataggtgccg tgttcatctt caaaggcggt catttgctca tcagggcgtt gtgattctgt
    11401 ataaaggaac actttatctg ttgcttcgcc attacctaga gtaggagcca catttttgac
    11461 ttcaatttcc ggctcatact taggcacaat ttgccctacc tcatcaatct taccttcttc
    11521 cattttatat tcccaacggc aagcattggt gcaagtgcct tggtttgggt cacgcttatt
    11581 gatatagcct gaaagcaagc agcgacctga atatgccata cacaaagcac cgtgaacgaa
    11641 gatctcaagc tccatatccg gcacttgttc acgaatttct tcgatctctt cgagtgataa
    11701 ttcacgggat aaaatcacac gggttagccc catttgacgc cagaatttca ccgttgccca
    11761 gtttaccgca ttggcttgca ccgaaagatg aatatccatt tcagggaaat tttcacgcac
    11821 caacataatt aagcccggat cagacataat caaagcgtcc ggcttcatat ccactaccac
    11881 ttttagatct ttgatgaagg tttttaattt tgagttgtgt ggcgcaatgt ttaccaccac
    11941 atagaatttt tttcctaagg cgtgggcttc atcaatcgca acttttaaat tggcgtggtt
    12001 aaattcatta ttacgcacac gcaagctata acggggctgt cctgcataaa tcgcatcggc
    12061 accataagca aaagcgtaac gcatattttt taaagaacct gcaggcgaaa gtagctcagg
    12121 tttggcatat tttaaagtca tattattctc ttttctgata acaagtcagg acttctcgac
    12181 gtgagaagcg taagcggtat attttctaag aaatattgcg tgatggcaag ctaatccatt
    12241 acaatccgat ttttatgtgg ggaacaatat gaaacttaaa taccttttag caacaacatt
    12301 actggctttt tcaacattta ccgccgctca aagcatcaag acggagatga tgcaaatgaa
    12361 tatgcaagcg aataaattga tgcgtgccga atcggcagaa gagtttagcg aaattgcgaa
    12421 tgatttcatt ataattaccg agaaaaccaa agggattttt cccaatagcg tagaaggcga
    12481 taaagcagct caggaagatt accaagccgg tatgcaaaaa ttaattgata tggttaatca
    12541 agccagtgag aaagctcaag caggtgaatt gcaagaagca aaaatgctga tttccgagct
    12601 tgaaatgatc aagcgtgaat atcacaaaaa atacaaataa ttcaacacat taaaagggtg
    12661 agctaaagct caccctttct attcaaattc cagttcaacc gaattctcac caagaagtgc
    12721 ctttaattcg ctaaacattg cctcattcgg gctgattcgc cactctactc cgcctttgag
    12781 caatacccta ccttccgggc tttggtaata aaaatgcagc ggtaaagtgc cttctttatg
    12841 tggggtgatg atagcggtca tttttttaat aaaatctgca gaaagttgct ctttgctaat
    12901 cgctaacgct aaacttttgg caaatcgacc ccttgcttca tcaagggata acacttctcg
    12961 agccgacatt ttcagtccac cgctgaaatc atcaaactgt accgaacctg ttgccacaat
    13021 aatttggtct tgttgcatca aatgcccgaa attttctaag gcttccgaga aaagggtaat
    13081 gtccaatttc cccgagcgat cttcaatagt cgcaatccca atacggcttc ctcgcttggt
    13141 aactgccact cgagatgcca taacaattcc tgaaaccgtg gtcatttgcc ctcggaaagt
    13201 cggttgcaat tcattcagcc gattaggggc atagtgggat aattctttga ggaatctacc
    13261 aatcgggtgt ccgcttaaat acagcccgag cgtggcacgc tctccatcta aaatcacttg
    13321 ctccgaccat tttggcgtat tggcgtaagc attttgcact tcttccggtg tctcggtaag
    13381 cacgccaaac atatcgctct gcccgagttc ctccatttta gcgtgctgat ctgaggcttt
    13441 aagtgcatct tccaaattct tcatcaaggc agctcggtga gggcctaatt tgtcaaaagc
    13501 accggacata atcaggcttt caaaggtgcg gcggttgatt tttttcagat cgacccgagc
    13561 ggttaaatca aatagatctt taaatttccc ctctttttgg cgagctgcca gaattgcctc
    13621 aatcggtcct tccccaacgc ctttaattgc tcctagcccg taaacaattt cgcctttttc
    13681 atttacgcta aaacgatgtt taccgctgtt tacatcaggc ggcacaacgg ttaagcccat
    13741 attcatacac tcatcgtaga acccgacaat tttatcggta ttatccatct ctgaggtcat
    13801 taccgcagcc ataaattctg ccggataatg ggcttttagc caaagtgttt ggtaagaaac
    13861 caacgcataa gctgctgagt gagatttatt aaagccgtag ccggcaaact tttctaccaa
    13921 gtcaaaaatt tgaccggcaa gtttaccgtc aatccctttg gcttccgccc ctttttcaaa
    13981 cacttcacgc tgtgcagcca tttcctccgg tttcttctta cccattgcac ggcggagtaa
    14041 gtccgctcca ccgagtgtat aaccggcaag ctcttgtgca atttgcataa cctgttcttg
    14101 gtaaacaatg accccataag tcggctcgag aataggtttt aagcattcgt gttggtattg
    14161 cggatcagga taagaaacct cttctttgcc gtgtttacgg tcaataaagt tctgcaccat
    14221 acctgattcc agcggccctg ggcggaatag tgccaccaat gcgataatat cttcaaaaca
    14281 gtccggcttc aggcgagaaa ttaagtcttt cattccccgt gattcaagct ggaatactgc
    14341 tgtagtttta gctgccagca acagagcaaa ggatttttta tcatcaagcg gaatggtttc
    14401 aatccgaatc ggctctttgc cttcacgagc caaacgttcg ttaatcatct ccaacgccca
    14461 tttgatgatg gtgagcgtac gcaagcctaa gaagtcaaac ttcaccaatc ctgcatattc
    14521 cacgtcattt ttatcaaaat gggtaaccgg gtgtaagccc tcgctatcgc aataaagcgg
    14581 cgaaaaatcg gtaatcgcag ttggggcgat caccacacca ccagcgtgtt tacctgcatt
    14641 acgagttaca ccttcgagct tacgagccat atcaataagg tctttcacct cttcatcggc
    14701 ttcatatagc tcaggcaatt ttggctcagc ggcaaaggct ttttcaagcg tcattcctgg
    14761 atcgggcgga atgagtttgg agatgcgatc cacaaagcta taggggtgtc caagcactcg
    14821 ccctacatct cgaatgaccg ctttcgccgc catagtaccg aatgtgataa tttgcgatac
    14881 cgcttgtcgc ccgtaggttt ccgcaacgtg ttcaatcaca cggtctcgcc cgtccataca
    14941 gaaatcaacg tcaaaatcgg gcattgaaac acgctcaggg ttgagaaaac gctcaaaaag
    15001 caaatcaaat tccaatgggt caagatcggt aatcttcaac gcataagcca ccaatgagcc
    15061 tgcccctgag ccacgacccg gtcctaccgg aatatcatta tctttggacc attggataaa
    15121 ctccatcacg atcaaaaagt aacccgggaa ccccatttgg ttgatcacat ctaattcaac
    15181 ttgcaatctt tcgtcataaa ccgaccgctt gttcgccctt tcctcaggat cagggaatag
    15241 aaactctaaa cgctcttcta agccttcttt cgattttttt accaagaaat cttcggtgga
    15301 aagctcaccg gtcgggaaat ttggcaggaa atactcgccc aaacgcacgg taaccgaaca
    15361 gcgtttcgca atttcaaccg tgtttgccaa tgcactcggt aaatcggcaa acagcttgca
    15421 catttcctct tcagtacgga aatattgttt cggtgagtat tttttcgggc gtttcgggtc
    15481 gtctagggtg tagctgtcgt gaatggcaac ccgaatttcg tgtgcgtcaa agtcatcttc
    15541 tttcaagaag acaacatcat ttaccgccac taacggaatt gcattttttt gtgaaaattc
    15601 gaccgcttgt ttgatatagc gttcttcgtc tgcccgtccg gtacggcaaa cggaaaggta
    15661 aaaatgattc gggtaatatt gctgataaaa agctaatttt tcttcagctt cttgtcggtt
    15721 ttctttgagt aaggctttac ccacatcgcc cattcgcccg ccggaaagaa tgatgatgcc
    15781 ctcattcagc tctgctaacc attcacgttc caccatcgga aattccacat agccttgctg
    15841 ataggctttg gacaaaattt gggtaatatt atggtagcct ttgttgttct tcgccagtaa
    15901 tgtcagctca aaataatctt cattgccgct ctcggttcta acataaacat ctgccccgat
    15961 aatcggctta atccctgctc ccaatgcttc gccatagaat ttcaccaacc cgcaaaagtt
    16021 tataaaatcc gttaagccca ttgccaccat attattagcg gcagcggttt taactaagga
    16081 ttttacctta gctaaaccat taatcattga gaaatcactg tgaactttta aatgaacgaa
    16141 acgacaatct gacataggaa tataatctaa gtaaagaagt ttcccctctt tagtaaagac
    16201 tgtcaggttc taaaaagtga agccttctgt gaataatccc gttgggcgaa tgttattcgc
    16261 ccctacaaac gagcattatt cttgctcaga gttacattta aaatccgaat gtaggggcga
    16321 attacattcg ccctttcaga acctaacaac cctgctttat ctaaagaagg gagttaaaat
    16381 taatcacgtt ttttgcttaa cagccaccaa acgatgatca aacagagtag gcttggaatt
    16441 aatgctccaa ccggtatagg taaccaagtg gcaattaagc ttaaattgcc aaacacaata
    16501 tttgccacat agaacataaa gccggcaaca ataccaatca caattttcgc ccccatcgta
    16561 ctactacgaa gcggcccgaa aataaaggag atcgcaagta gcatcatcac cgccattgag
    16621 attggttgga atacttttcg ccagaaggtg atctcaaaac gtttcggatc ttgtccggta
    16681 tcttttaaga agccgacata atctgccaag cctgaaatcg agagcgactc cggtttgagt
    16741 gaaacaatgc ctaatttgct aggggttaaa ctggtttgcc aaacttgatc tggctgttta
    16801 gcttgctgga tctgattttc tcccacagtc gatttttcca ctttagatag cacccagcct
    16861 ttttcatcac tgtaattcgc agttcgggct tttaaaacag attgcaattc acgtttgttt
    16921 tgtccttcgc cgaattgata aatcagtacg ttatctaagc ttttttcatt tttaatatga
    16981 ttaatataga taaatgaatt gccatctttc gcccaaaacc cgtcttttgt ggcaagcatt
    17041 gagccgccac tttgggcaat cgaacgcata ttacgggcaa actgctcggt ttgtggcacg
    17101 ccccattcgc cgataatcat cgtaaaaatg actaacggta aggcagtttt catcacggct
    17161 aaaccaatgc ggaaacggga aaaaccggag gcttgcatca ccaccaattc actaaggctc
    17221 gctaggttgc ctaaaccgag taatgagcca agtaatgccg caatcgggaa aaaggtttcg
    17281 atatctcgtg gaatagttaa aaaagtatag tatgccgctt ttaagccatc gtaagatcca
    17341 cgtcctacat cacgaaactc ttccacaaat ttaataatcg ccccaagccc aatcaacata
    17401 aacagggtta aaaaaatcgc ggataaaatc gttttgccga tgtagcgttc taaaatattc
    17461 attgagaaaa attgcattat gccaccgcct tattggttaa tttttttgca ccaaattgat
    17521 agcgtaactt agacataaat ttactatccc acgcatttaa aataacacct aaaactaaaa
    17581 aggcaactga taccaacggc attaacactt ccgcattcaa cttgcctgat gcccctgacg
    17641 attttagcga gctttgtagt aagaaataga ttaaataaag caataacgcc ggcagtagtt
    17701 tagcaaaacg cccttgacga gggtttacac tactcattgg caccgctaat aatgccatta
    17761 acggtacagc taaaatcaaa gcaagccgcc aatgaagctc ggcttttgct tccggcgttt
    17821 tggtttccat taatttcttg aaatcggctc gttgcactaa tttctcatca gattcaacgt
    17881 cttgatagcc taaataagca gaataattct caaaatgtga aatacggaaa tcggcacttt
    17941 gtggtgtacc ttcaaaacgc ttgctctctg ccaaggttaa gacttgatcc ccatttggca
    18001 aaccttgcaa cgtgccggat tcagcaacaa ccactgaagg tttgtttttc ttctgctgtt
    18061 ccggctggaa aacgtagata tcatttagac tgttattttc aattttatca ataaataaca
    18121 catagccacc ggcagacata aattgtccgg ccgaaagagc cgcaaaacgt gggttggctt
    18181 tcgcttccgc taacatttca ctctgtttat taattgccca aggcgtaagc caaaacacgt
    18241 tataaaccgc taatgcagtg gtaaaaatcg agagaaacat cgccacttta accaatagcc
    18301 cttgcccgat accacaagcc cgcattacgg taatttcact ttcggcataa aaccgcccga
    18361 gggttaataa caaggcgata aacagtgaga gtggcagcat taattgtgcc attgtcggca
    18421 tacctaagcc taataagctc accactaaat ctgccggtac tttaccactc acagcagaac
    18481 ttagaacacg cactaattgc tgacaaaaaa agatcagtaa taagataaac aatatcgcca
    18541 attggctttt aaatatctct ttggttaaat atcggcttaa gatcacgttt tttctctata
    18601 acatttacaa atctgaatac cgctaaacac aagcggtcta tttttgttaa ttttttgcaa
    18661 agagcgcaaa ataacttatt cgaatcgcta ataatacctt tttcatacaa aaaaatcacc
    18721 tatagaaaat atcacgcacg gcaaaaccgt gcgtaagtat tattgttttt tcgatttttt
    18781 cgatgatgtt gctttatgag cttcaagaat taatttctta ccttggctat cttcaatttc
    18841 aatcttaggt ggtgcttccg tattttgatg aaggatagct ataatatttt caccttgtgc
    18901 aatatcttca aagtttcctt tcacacgtaa cttagccgca tcaacactag tgtcaaatac
    18961 taagaatgta cctaatgcgg taactctaat atttttaagc cctatattgt ccttcgttac
    19021 cgttttatat tgaggtgctt ttttcccttt tgcagccata atcttctctt gattagtcgc
    19081 aatattaaga atattttgaa ctttagtcgc ttctgctgta gattgtgcct gttctgttaa
    19141 atttggttct ccatcaaaaa taacatcccc aacaaattgc acctctttag gctcattttg
    19201 caataatggt gcaacgtctt tagctgaaac aaccaaaaat aaccgttcac ctattttttc
    19261 aaaacggaca tcaatattgg ttaattgtga ttcaatttgt tcattaattg tcttgatcgc
    19321 agtttctgtc tcattttgaa gcgatatttt acgtgtaata tcaacatcat aagcaataaa
    19381 accaactttt aaacgttgtg ataactgctg aagtaaattg cccacatttc catcataaga
    19441 aagacgtaac tttgcctgct catagcgact aatttgagca tcatcattag cgaaaatagt
    19501 gttttgagtc cctaagccga ttagaccaac aacaaacgtt ttaccccaaa agcgcatcat
    19561 ttttatctcc aattattctc ttaaatctaa aaaactcttt tagtataaag taagcaaac
//
LOCUS       DANLVT010000039        19040 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.039, whole genome shotgun sequence.
ACCESSION   DANLVT010000039 DANLVT010000000
VERSION     DANLVT010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19040)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19040)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19040
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.039"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..913
                     /gene="trxB"
                     /locus_tag="PXC99_001160"
     CDS             <1..913
                     /gene="trxB"
                     /locus_tag="PXC99_001160"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013526052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HDL5417619.1"
                     /translation="PAGYTAAVYAARANLNPVLVTGMQQGGQLTTTDEIENWPGEFEQ
                     ITGTELMNKMLKHAEKFETEIVFDHIHSVDLSKRPFTLNGDLYTFTCDALIIATGASA
                     KYLGLPSEEHFKGKGVSACATCDGFFYRNKPVAVVGGGNTAVEEALYLANLASEVHLI
                     HRRDSFRAEKILLGRLQKRIEEGKIILHTDRTVDEVLGDNMGVTGLRLKSTKEELSEE
                     IKVDGFFVAIGHAPNTAMFEGQLELENGYIKVKSGLEGNATATSVEGVFAAGDVMDHN
                     YRQAITSAGTGCMAALDAERFLDAQEA"
     gene            923..1678
                     /gene="kdsB"
                     /locus_tag="PXC99_001161"
     CDS             923..1678
                     /gene="kdsB"
                     /locus_tag="PXC99_001161"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HDL5417620.1"
                     /translation="MKFTVIIPARYASSRLPRKPLLDIAGKPMIQHVWEKAQLAGASR
                     VIIATDHPEIEALAQSFGAEVCMTSEKHNSGTERLAEVIEKMQIADSEIIVNIQGDEP
                     LIPPVIVTQVAQNLDAYQVNMATLGVKLATREELFNPNAVKVVADKNGMALYFSRASI
                     PFARDSFPDCDDSFVAAQGYLRHIGIYAYRAGFVKQYVAWQPTQLEQLESLEQLRALW
                     HGEKIHIEPAKEAPQVGVDTPEDLERVRAILAR"
     gene            1756..2175
                     /locus_tag="PXC99_001162"
     CDS             1756..2175
                     /locus_tag="PXC99_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF937 domain-containing protein"
                     /protein_id="HDL5417621.1"
                     /translation="MLGNILGSLASSVLSGNNQSTATQLIQNLLASQGGIEGLIAKFQ
                     QGGLDDVLRTWISSDEDNAPVSGEQISNVFGQENIQNVAQEAGVDAADASDLLAQFLP
                     KIVDTLTPNGNVEDLKNFDANDLLAQAAKGILGNLFK"
     gene            complement(2229..3215)
                     /locus_tag="PXC99_001163"
     CDS             complement(2229..3215)
                     /locus_tag="PXC99_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HDL5417622.1"
                     /translation="MSQLIRTLKGHIRDEIIKKGGWVNAHAHADRAFTMTPEKITVYQ
                     NANLQQKWDLVDEVKRNSSVEDYYRRFSQAIELMISQGVTAFGTFVDIDQVCEDRAII
                     AAHKAREVYKNDIILKFANQTLKGVIEPNAKKWFDIGSEMVDMIGGLPYRDELDYGKG
                     LEAMDILMDKAKSLGKMLHVHVDQFNSPKEKETEQLCDKSIEHGMQGRVVAIHGISIG
                     SHPKEYRKMLYQKMRDSQMMVIACPMAWIDSGRKEDLQPFHNALTPADELIPEGITVA
                     IGTDNICDYMVPLCEGDMWQELSLLSAGCRFTNLEEMANIASINGRKVLGLV"
     regulatory      3499..3642
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            3686..4639
                     /gene="thiB"
                     /locus_tag="PXC99_001164"
     CDS             3686..4639
                     /gene="thiB"
                     /locus_tag="PXC99_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter substrate binding
                     subunit"
                     /protein_id="HDL5417623.1"
                     /translation="MKFILSSLALLSASVYANQPTLTVYTYSSFASEYGPAPKLEQNF
                     EKECGCDVKFVPLDDSVTMFNRLRLEGAKTKADVVVGIDNFLQPEAEKSGLFAEFEAK
                     TKLETQQKIFFPYDTGSYAFIYDKEKLKNPPKSLKELVERQDLKVIYQDPRTSSVGRG
                     FLMWVNQVYGDEAPTAWKTLAKHTVTVGKGWSETYGAFLKGESDLVLSYTTSPLYHKW
                     HENTDKYVAAPFEEGHLVQVENAAIVKSSQQKALANQFLEFLHKPESQHIISYHNVMN
                     PVLTDGVDPAFAAMPTYKTIEFTPPTTETIQKWLADWSKSW"
     gene            4889..5335
                     /gene="dksA"
                     /locus_tag="PXC99_001165"
     CDS             4889..5335
                     /gene="dksA"
                     /locus_tag="PXC99_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HDL5417624.1"
                     /translation="MTQAAKTSLGLLALAGVEPYELKKDEEYMNEAQREHFTKILKAW
                     HSQIMEEAERTKSQLQEDMTNFADPNDRASQEEEFSLELRNRDRERKLLKKIEQTLYK
                     IQEDEYGYCETCGVEIGIKRLEARPTADLCIDCKTLAEIREKQLGL"
     gene            5580..6911
                     /gene="pcnB"
                     /locus_tag="PXC99_001166"
     CDS             5580..6911
                     /gene="pcnB"
                     /locus_tag="PXC99_001166"
                     /EC_number="2.7.7.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HDL5417625.1"
                     /translation="MLHKKFAVNASQYRISPKDFPKNAISIVDKLQIAGYEAYIVGGC
                     IRDLLLEKKPKDFDIATNARPEEIQRIFGRQCRLIGRRFRLAHIVYGREIFEVATFRA
                     GHESHRNDKISKVSDEGMLLRDNVYGTLREDAERRDFTVNALYYDIKRNLIFDFFNGI
                     EDLRAGKLSLIGEPTIRYQEDPVRMLRAVRFMAKLDMFLDKATASPIRDMAVLLTNIP
                     AARLFDESLKLLQTGAGLKTYQLLREYELWQFLFPVLPAFFTAKGDSYAERMITKALN
                     STDERIADKLPVNPAFLFAALLWYPLREKMEQLKNEGGFNSYDAMMLAANDVLAESCN
                     AIALHRRHTSVIRDIWALQFQMMKRSGNRPQQTLEHVKFRAGFDLLVMRAEIEGGDLV
                     ELSAWWHEYQFSNEGQRTELLKSVRHLGNVPSEKKKTRRRRTFKKKPKVNG"
     gene            7114..7587
                     /gene="folK"
                     /locus_tag="PXC99_001167"
     CDS             7114..7587
                     /gene="folK"
                     /locus_tag="PXC99_001167"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HDL5417626.1"
                     /translation="MQTVYIALGSNLENPLEQLKQAVEKLKKFANEFEISPFYGSKPV
                     GPQDQPDYVNAVAKFSTDLSPTALLDKLQSIENEQGRVRVRRWGERTLDLDIILYGNQ
                     QIQTERLNVPHIEMKNREFVIVPMFDLTPDLVLPTGEKLADIYAQFKDHQMIIFS"
     gene            complement(7584..7778)
                     /locus_tag="PXC99_001168"
     CDS             complement(7584..7778)
                     /locus_tag="PXC99_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnbE family lipoprotein"
                     /protein_id="HDL5417627.1"
                     /translation="MKPATFYFAIFLLNLTACTPKVQLETPSEGITINMNVVVDHRID
                     VKMDEKSRAVITKSENKTKN"
     gene            complement(7796..9571)
                     /locus_tag="PXC99_001169"
     CDS             complement(7796..9571)
                     /locus_tag="PXC99_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbH domain-containing protein"
                     /protein_id="HDL5417628.1"
                     /translation="MPLKTAIRISLLSQNSWGKGNIVISNSDGEITEKGLNLPLRLTG
                     NIKHGNFILYSSVPLDFQGNFDDLSVKFLPSSLLRLTGKERYLTIEDLRFPLAGIKID
                     KHGIHGRLHAILRGQSPDFNNIEFHLDGQAQNFKAGALDFFQDPKDANAVKDSWKWRI
                     WGASILKAFNSKVNLSGRGQWHKQLVRLEELKGDLATVKLADTTISKITLNNTQAIRF
                     NVKKFTLDGAVMLQSPEIAFSYGGVLPKPRVNLAFDGEVEKLRFKGAVNTTELGPLKL
                     FARRQLSQDASQIIGKLYWPEQSAQGFQPLFPFRSQWVINNGTIRGETAFSAGSKNGL
                     IAGGHLAIRNGGLSLPNGEAKGIEFSLPYRYQNGRFHFGAKKPLDVKIAQIKLGDLAL
                     DNASMKLNGYYPYTKAKPLNLNQLSFDLFGGKLNVKRFALPQTELAYLNLERIDFEQI
                     LQFMQYQQIDLKGKANAILPFWLSGKPCYICDGLLTQAETSYLTFTPELLSEMQKSGY
                     TEQILLHLVDKSTINDFRSLINVGPKGDLVLDGKLKLSSNQNKSKVNLNYNHRENLFD
                     LWHLINYGSQFEQKLENYLYQKLER"
     gene            complement(9757..10503)
                     /locus_tag="PXC99_001170"
     CDS             complement(9757..10503)
                     /locus_tag="PXC99_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417629.1"
                     /translation="MKRALKFFGIATVLSVVAIYYFLMPSHYLATPINWILPKAWKVQ
                     LPQGLNLNWQGSSLAQFQLSYRDCPLLSADKTDLGWIEKNHLSVDKLDIDYRCLALFP
                     QNEHSNSDTSLNALLAVIPDGEATIHALNWKNLPTDFNPRLQRLFEQTAIKLSLSKGE
                     IQATAAQQAVKFAANFANGRLNADLSYQPNEKEQHNLRISAEIEDNFTQLPPTISAEY
                     DWQLSYEIIANKALQKGALFSVGKKMPHKS"
     gene            complement(10507..11322)
                     /locus_tag="PXC99_001171"
     CDS             complement(10507..11322)
                     /locus_tag="PXC99_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417630.1"
                     /translation="MAHDHDSPSKLEISTHAALPMVLMLFIEMALNFYSAPKNSIFIS
                     PYLLAFFVTSLISFLVLWKGEICRGQASRLSFILPFLLIFAVGNFLYSIGFTPKHNPM
                     AVASIAAVFACLIYFRLPEDQTLYNTLMYCGLAISSIGIIQYLAIYWFELPSLFNGIR
                     ANNFAQVLLGILLAGWYLMLAKSRLDVFLKLLVKTALVVLILNYCWTAFVLYQHLQIM
                     PDMPLLSFIIYFAAQFVILLMLAWLLLGKNIKNPTAWTVATLLAILYPFANVV"
     gene            11412..11819
                     /gene="gloA"
                     /locus_tag="PXC99_001172"
     CDS             11412..11819
                     /gene="gloA"
                     /locus_tag="PXC99_001172"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HDL5417631.1"
                     /translation="MRILHTMLRVGDLERSIKFYTDVLGMRLLRRSENEQYKYSLAFL
                     GYADESESAVIELTYNWGVDKYELGTAYGHIALGVDDIYKTIEDVRAAGGKITREPGP
                     VLGGTTVIAFAEDPDGYKIEFIENKDAKAALGN"
     gene            11904..12551
                     /gene="rnt"
                     /locus_tag="PXC99_001173"
     CDS             11904..12551
                     /gene="rnt"
                     /locus_tag="PXC99_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010130043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease T"
                     /protein_id="HDL5417632.1"
                     /translation="MEQTTEQIDYKLLKHRFRGYLPVVIDVETAGLNAQTDALLELAA
                     ITLKMDEQGYLVPDQQCHFHIAPFEGANINPESLKFNGIDIDNPLRGAVAENIAIPEM
                     FKMVRKAMKEQGCQRAVIVAHNAAFDQGFLQAAIKRINAKRDPFHPFAMFDTATLAGF
                     MYGQTVLVKACQVAKIPFDGKQAHSALYDTERTAELFCAMVNRLKDLGGFPPLSD"
     gene            12972..14723
                     /locus_tag="PXC99_001174"
     CDS             12972..14723
                     /locus_tag="PXC99_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HDL5417633.1"
                     /translation="MFKLKSSFVLLNAALLAACSSNGGSFDVQSAKVESQTQTTPKKP
                     SLQDDNSNARRTVSASETEALLQPGFGFSAKIPRRNLFPQGKEDVAPIGDIKEITGDL
                     TKIPYEEEVKAYGSSADGFSHTHDRNHKLYTRDFNFVRSGYVLHSGAKPEIKPKEILR
                     TGAHGYVYYLGIEPAKAIPTQKATYKGYWDFTTDARKGRDSKYFSNSAGINIGATPEN
                     SYDINVDDSEKPMGHTGEFTADFANKTLTGTLVRNGYVSRSKEQKITTIYDIDAKIKG
                     NRFSGKANAKNTDDPYFGKSSTTLEGGFFGGKAQELAGKFLADDKSVFVVFAGKRDAK
                     KDDSESAFDAFKIKLKDLNKSEMDTFGNATHLIINNKQIPLIAEGKKSFAEMKFDDLV
                     TRTIDDKTYRVSVCCNNLDYVKFGTYSEGNNSDTAHQYLVGERTAVADLPTGTVKYRG
                     TWDGVMYSKSGSAGAESPSNSESGTRSLFDVDFVNKKINGKLIANDGVEERPMLTLEG
                     NLKGNGFAGTAKTGNSGFNLDPKSTNGGTVVHINTQFEGGFYGPKATELGGIVHSAET
                     DKDRVSITFGGKRQIEK"
     gene            14817..17603
                     /locus_tag="PXC99_001175"
     CDS             14817..17603
                     /locus_tag="PXC99_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoferrin/transferrin family TonB-dependent
                     receptor"
                     /protein_id="HDL5417634.1"
                     /translation="MKYHHFRYSPVALTVLFALSHSYGAATENKKIEENNDLAVLDEV
                     IVTESHYAHERQNEVTGLGKVVKNYHEMSKNQILGIRDLTRYDPGISVVEQGRGASSG
                     YAIRGVDKNRVSLLVDGLPQAQHYHTLGSDANGGAINEIEYENIRSIELSKGASSAEY
                     GSGALGGAIGFRTKDAQDIIKEGQHWGLDSKTSYASKNSHFLQSIAAAGEAGGFEALV
                     IATHRHGKETKIHSEANKLKHNIRRITGFENRYDLYPNSAQNAPGGSFFIVEDTCPTL
                     DCTPRARVKLNRDNFPVRTFPEYTPEERKQLEQIPYRTEQLSAQEYTGKDRIAPNPLD
                     YKSNSVFMKFGYHFNSSHYLGAILEDTKQRYDIRDMQTPAYYTKDDINLSLRNYVYEG
                     DNILDGLVFKPRIPYGLRYSHVKFFDERHHKRRLGFTYKYKPENNRWLDSIKLSADKQ
                     DIELYSRLHRLHCSDYPVVDKNCRPTLDKSWSMYRTERNNYQEKHRVIHLEFDKALNA
                     GQGVFKQTHKLNLGLGFDRFNSLMDHGDMTAQYTKGGYTSYRGRGRLDNPYIYRRDPR
                     SIETVSLCNNTRGDILNCEPRKIKGDSHFVSFRDLVISEYVDLGLGVRFDQHRFKSDD
                     PWTLSRTYRNWSWNGGITLKPTEFVSLSYRISNGFRVPAFYELYGKRNHIGLKDNEYV
                     QRAQRSHQLEPEKSTNHEIGVSFKGQFGYLDVSYFRNNYKNMIATACKRIIQKSHCFY
                     NYHNIQDVALNGINLVAKFDLHGILSMLPDGFYSSVAYNRVKVKERKLTDSRLDSVND
                     PILDAIQPARYVLGFGYDHPEEKWGIGITTTYSKAKNADEVAGTRHHGIHRVDLGGKL
                     TGSWYTHDITGYINYKNYTLRGGIYNVTNRKYSTWESVRQSGVNAVNQDRGSNYTRFA
                     APGRNFSLAFEMKF"
     gene            complement(17708..18004)
                     /gene="fis"
                     /locus_tag="PXC99_001176"
     CDS             complement(17708..18004)
                     /gene="fis"
                     /locus_tag="PXC99_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator Fis"
                     /protein_id="HDL5417635.1"
                     /translation="MLEQQPTQNPLTVTMLNAQAQQVNKPLRDNVKAALKNYLSQLNG
                     EDPTELYELVLSEIEHPMLDMVMQYTRGNQTRAATMLGINRGTLRKKLKKYGMG"
     gene            complement(18009..18998)
                     /gene="dusB"
                     /locus_tag="PXC99_001177"
     CDS             complement(18009..18998)
                     /gene="dusB"
                     /locus_tag="PXC99_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HDL5417636.1"
                     /translation="MQIGQYAIKNRIFLAPMAGITDQPFRRLCSQLGAGLTFSEMMST
                     NPDVWHTEKSRLRLAHHDEIGLNAVQIAGSDPVEMAKAAKINVEYGADIIDINMGCPA
                     KKVNKNMAGSALLRNPKLVAQILDSVVNAVDVPVTLKIRTGWDQENRNCLQIAKIAEQ
                     AGIKALTIHGRTRSCLFNGEAEYESIKAVKEAISIPVIANGDIDSAEKAKFVLDYTKA
                     DAIMIGRASFGNPWIFKEINDFFETGLSSPLSIDKKYQLMFKHIEDLHQFYGEEKGYR
                     IARKHVGWYTEKLNPESNFKRTFNTLSSTKEQLYALEDFVKSIHLESQLRKVG"
BASE COUNT         5711 a         3583 c         4131 g         5615 t
ORIGIN      
        1 gcctgccggt tataccgctg ctgtttatgc cgcccgtgcc aatctaaacc cggttttagt
       61 caccggtatg caacaaggcg gacagctcac tacaaccgat gaaatcgaga actggccggg
      121 ggaatttgaa caaattaccg gcacagagtt aatgaacaaa atgctcaagc acgctgaaaa
      181 atttgaaact gaaatcgtgt ttgatcatat tcattcagtg gatttatcta aacgcccatt
      241 cacgctaaac ggagatttat acactttcac ctgtgatgcg ttaattattg ccaccggtgc
      301 gtcggcgaaa tatttaggtt tgccttctga agagcatttc aaaggcaaag gcgtgtcggc
      361 ttgtgcaact tgtgatggtt tcttctatcg caataaaccg gttgcggtag tcggtggtgg
      421 gaatactgct gtggaagaag cactttattt ggcaaatttg gcaagtgaag tgcatttaat
      481 tcaccgccgt gatagcttcc gtgctgaaaa aatcttgctt ggtcgtctgc aaaaacgtat
      541 tgaagaaggc aaaattattc tgcacacaga ccgtacggtt gatgaggtgt taggcgataa
      601 tatgggcgtt accggcttac gtttaaaatc aaccaaagaa gaattgagcg aagaaattaa
      661 ggttgatggt ttctttgtgg cgattgggca cgcaccgaat acggcaatgt ttgaaggtca
      721 attagaactt gaaaacggct acattaaagt gaaatcaggt ttggaaggca atgctactgc
      781 cacttctgtg gaaggcgtat ttgctgccgg tgatgtgatg gatcataact atcgccaagc
      841 gattacctct gccggcacag gttgtatggc agccctggat gcagaacgtt tcttagatgc
      901 tcaagaagca taaggatagc ctatgaaatt cactgtaatt attcctgctc gttacgcttc
      961 cagccgtttg cctcgtaagc cgttgttgga tattgcaggc aaaccgatga ttcaacacgt
     1021 ttgggaaaaa gctcagcttg ccggtgcaag ccgtgtgatt attgccaccg atcaccctga
     1081 aattgaagcc ctcgctcaat cttttggggc ggaagtctgt atgacttcgg aaaaacacaa
     1141 ttccggcact gagcgtttgg cggaagtgat cgaaaaaatg cagattgccg acagcgaaat
     1201 tattgtgaat attcagggtg atgaaccgct gattccaccg gtaattgtta ctcaggtagc
     1261 tcaaaattta gatgcttatc aagtcaatat ggcaacactc ggtgtgaaat tagcgacccg
     1321 agaagagcta tttaacccaa atgcggtgaa agtggtggca gacaaaaacg gaatggcact
     1381 ttatttttcc cgagccagca ttccgtttgc cagagacagt tttccggatt gtgatgacag
     1441 ttttgttgcc gctcaaggtt atttacgcca tatcggcatt tacgcttacc gagccggttt
     1501 tgtgaaacaa tatgtggcgt ggcagccgac acaattagaa cagcttgagt cccttgagca
     1561 actaagagcc ttatggcacg gtgaaaaaat tcatatcgaa ccggcgaaag aagccccgca
     1621 agtgggggtg gatacgccgg aagatttgga aagagtgcga gccattttag ctcgttaaag
     1681 tgattacaag cggtcgaagt ttgctgtttt tttgcaaaat tttcgcaaaa ttgtaccgct
     1741 tgcataggag aaattatgtt aggaaatatt ttaggttcat tggcttcttc agtattgagt
     1801 ggcaataacc aatcaactgc aactcaatta attcaaaatt tactcgcctc acaaggtggg
     1861 attgaagggc tgattgccaa attccaacaa ggcggattag atgatgtgtt acgcacttgg
     1921 atcagcagcg atgaagacaa tgcacctgtt tcgggcgaac aaatcagtaa tgtgttcggg
     1981 caagaaaaca ttcaaaatgt ggctcaagaa gcgggtgttg atgctgctga tgcgagcgat
     2041 ttattagccc agttcttgcc aaaaatcgtg gatactttaa ccccgaatgg taatgttgaa
     2101 gacttaaaaa actttgatgc aaatgactta ttagctcaag cggcaaaagg gattttgggt
     2161 aacttgttta aataatcggt tatgctgtta ttaaaggcga acctagggtt cgcctttcgt
     2221 ttattcagtt agactaaacc cagtactttt cgaccattga tactggcaat atttgccatt
     2281 tcttctaggt tagtaaaacg acagcctgct gataaaaggc tgagttcttg ccacatatcg
     2341 ccctcgcaaa gcggtaccat ataatcacag atattatctg tgccgatagc aacagtaatg
     2401 ccttcaggaa tgagttcatc agcaggggtt aaagcgttat ggaacggttg taaatcttcc
     2461 ttacgtccgc tatcaatcca cgccatcgga caggcaatga ccatcatttg gctatcacgc
     2521 attttttggt aaagcatttt tcgatattct ttcgggtgcg agccgatgga aatcccgtga
     2581 atggcaacca ctcgcccttg cataccatgc tcaatcgatt tatcacacag ttgttcggtc
     2641 tctttttctt taggtgagtt aaattgatca acgtggacgt ggagcatttt gccgagcgat
     2701 ttggctttat ccattaaaat atccattgct tccaagcctt tgccgtaatc cagttcgtca
     2761 cggtaaggca agccaccaat catatccacc atttccgagc cgatatcgaa ccactttttc
     2821 gcattgggtt caatcacgcc tttcaacgtt tggttagcaa atttcaagat gatgtcgttt
     2881 ttatatactt cacgggcttt gtgagcggca ataatggctc tgtcttcaca tacttggtcg
     2941 atatccacaa aagtaccaaa tgccgttacc ccttgtgaaa tcatcaattc aatcgcttgg
     3001 gaaaagcggc ggtagtaatc ttctacgctt gaattacgtt ttacctcatc gaccaaatcc
     3061 catttttgct gtagattcgc attttggtaa acggtgattt tttcaggcgt catcgtaaat
     3121 gcacgatctg cgtgggcgtg tgcatttacc caaccgcctt ttttgatgat ttcatcacga
     3181 atatgtcctt ttagggtacg aatcaattgg ctcattttta ttccttttct ctctgttaat
     3241 gtggctcaac cgcttgcggt aattgcaagc gtgcgaaaaa aaatcgctat aacagcgatt
     3301 ttgaatggtt tgaaatgaat agaaaaacag ctacgcctct aaagttgaag cgtagctgtt
     3361 gggaatttga tttaaccgat gttgtgcaat tcatttctag ttccttgttt ggactagggc
     3421 ggtagtatac ggatttttaa tacaaatagc aaacgtttgc tttggttgaa atctgcctgc
     3481 aaacttttta caatgaagcc gttctcattg gggtgcaaca agcggttgtt tttgcgtaaa
     3541 aatttgcaaa tttttgccga aatttaaccg cttgtggctg agaaataccc atagaacctg
     3601 atctgattaa tatcagcgta gggatttgag atagcaactt gcctttctta aatccttcta
     3661 ttcatttaat ttagaaggaa ttgttatgaa atttatcctc tcttcacttg cgttattaag
     3721 tgcaagtgtt tatgccaatc aaccgacctt aaccgtttac acttacagct cgtttgcttc
     3781 ggaatatgga cctgctccta aattagagca gaattttgag aaagagtgtg gctgtgatgt
     3841 caaatttgtt ccgcttgacg atagcgtaac gatgttcaac cgcttgcgtt tggagggagc
     3901 aaaaaccaaa gctgatgtgg tggtcggtat tgataatttc ctgcaacctg aagccgaaaa
     3961 aagtggcttg tttgccgagt ttgaagcaaa gaccaaatta gaaacccaac agaaaatttt
     4021 cttcccttat gacacgggtt cttatgcttt tatttacgat aaagagaagc tgaaaaatcc
     4081 accaaaaagt ttaaaagagt tggtggaacg ccaagattta aaagtgattt accaagaccc
     4141 acgtaccagc agcgttgggc ggggcttctt aatgtgggta aatcaagtgt atggcgatga
     4201 agctccaact gcttggaaaa cattggcaaa acatacggta acggtaggca aaggttggtc
     4261 tgaaacttat ggagcgttct taaaaggcga gtcggatttg gtactaagct atactacatc
     4321 gcctttatat cataagtggc acgaaaacac cgataaatat gtggctgctc cgtttgagga
     4381 agggcatttg gtgcaagtag aaaatgcggc tattgtcaaa agcagccaac aaaaagcatt
     4441 ggcaaatcaa tttcttgaat ttttgcacaa accggaatcg caacatatta tttcttacca
     4501 caacgtaatg aatccggttt taaccgacgg cgttgatccg gcttttgcgg caatgccaac
     4561 ctataaaacc attgaattta cgccaccgac tactgaaact atccaaaaat ggttagccga
     4621 ttggtcaaag agctggtaaa aagtgtttga aaaatagccg aatggatgtt cggctatttt
     4681 tttgtgcaat caaatcaatt tgaatgcaaa atttttgcaa attcatttga ttaatgagtc
     4741 gtttttgtgt tatttatagc cgccattatt taaaacccga agatgttgat tttttcgtat
     4801 agtgcggtta caaggaagtt agtctgtatt cgggcaataa ttttaacaat aaaacttcca
     4861 ataaacaggg aacaaggagt aaatatctat gactcaagcg gctaaaacct cactcggttt
     4921 attagcatta gcaggcgttg agccttatga gcttaaaaaa gacgaagaat atatgaatga
     4981 agctcaacgt gagcatttca ccaaaattct gaaagcgtgg cacagtcaaa ttatggaaga
     5041 agcggagcgt accaaaagcc agcttcaaga agatatgact aactttgccg atccgaacga
     5101 ccgagccagt caagaagaag agttcagttt agagcttcgt aaccgtgatc gtgaacgcaa
     5161 attattgaaa aaaattgagc aaaccttgta taaaatccaa gaagatgaat atggttattg
     5221 cgaaacctgt ggcgtagaaa ttgggattaa acgtttagaa gcacgcccaa cagctgattt
     5281 atgtattgac tgtaaaactt tagctgaaat tcgagaaaag cagctaggct tataatcaac
     5341 tttacagggt gcctcttttt taagaggcat ttactattta gaggtgtatt atttttaatt
     5401 atattaaatc attattttcc aagcctaaaa agtcggctca gaaaaatgaa aaggtagaga
     5461 gtgaaaaaag agcggaaaga gaacccaaaa cttcccgttc taaacgccca gccccgaact
     5521 taacggacca aaagacttat agaggtggga agaaacaaca agataatcct ccctcccatt
     5581 tgttacacaa gaaatttgcg gtgaatgcca gccaatatag aattagcccg aaggattttc
     5641 ctaaaaatgc gatttcgatt gtcgataaat tgcagattgc cggttatgaa gcttatattg
     5701 tgggtggctg tattcgagat ctactcttgg agaaaaagcc taaagatttc gatattgcga
     5761 ctaatgcgag acctgaagaa attcagcgta tttttggtag gcaatgccga ttaatcggac
     5821 gtcgtttccg tttggcacac attgtttacg ggcgtgaaat ttttgaagtg gcgactttcc
     5881 gtgcaggaca cgaatctcat cgcaatgaca aaatttctaa agtcagcgat gaaggaatgc
     5941 tactgcgtga taatgtttac ggcacgctcc gtgaagatgc agagcgccgt gatttcaccg
     6001 taaacgcctt atattacgat ataaaacgca atcttatttt tgatttcttc aacggtattg
     6061 aagacttacg agcaggtaaa ctttcgctta tcggagagcc tactattcgt taccaagaag
     6121 atccggtgag aatgttgcga gccgttcgtt ttatggcgaa gttggatatg ttcttggata
     6181 aagccacggc ctccccaatt cgggatatgg cggtgttgtt aaccaacatt ccggcagccc
     6241 gtttgtttga cgaatcactc aaattattac aaaccggtgc agggctgaaa acttatcagc
     6301 ttttgcgtga atatgaacta tggcaattct tgtttccggt attgccggca ttttttactg
     6361 ccaaaggtga ttcctatgcc gaaagaatga ttaccaaagc gttaaattca actgatgagc
     6421 gaattgccga taaattaccg gtaaatcctg cgtttttatt tgctgcacta ctttggtatc
     6481 cgctccggga gaaaatggag cagcttaaaa acgaaggtgg cttcaacagc tacgatgcaa
     6541 tgatgctggc agcaaatgat gtgctggcgg aaagttgcaa cgcgattgcg ttgcaccgca
     6601 gacacacttc agtcattcga gatatttggg cattgcaatt tcagatgatg aaacgaagtg
     6661 gcaaccgacc gcaacaaacc cttgaacacg tcaaattccg tgcagggttt gatttattag
     6721 tgatgcgtgc agaaattgaa ggcggcgatt tggtcgaact ttccgcttgg tggcacgaat
     6781 accaatttag caatgaaggt cagcgtactg aattgctgaa atcggttcgt catttaggca
     6841 atgtgcctag cgagaaaaag aaaacacgcc gccgtagaac ctttaagaaa aaaccgaaag
     6901 taaatggata attaatatat ttccctctcc ccttgtggga gagggagcga tttttcttcg
     6961 ttcagaagaa aaatcaggga gaggggaaat gtgtaaaaaa tttaataaaa gttaccgctt
     7021 gtcccctctc tctgcttatt tcgctgaacg ctcataagcg gtctctctcc cacaagggga
     7081 gagagtttat tgttatattt gtaagtatat tttatgcaaa ccgtctatat cgccttagga
     7141 tcaaaccttg agaatccgct tgagcagctt aaacaagcgg tcgaaaaatt aaaaaaattt
     7201 gcaaatgagt ttgaaatcag cccgttctac ggctcaaagc ctgtcggacc gcaagatcag
     7261 cctgattatg tcaatgcggt agcaaaattt agtaccgacc tatcgcccac tgcattgctg
     7321 gataaattgc aaagcattga aaatgagcag ggaagagtgc gtgtacgccg ttggggggag
     7381 agaactttag atctggatat tattttgtac ggcaatcagc aaattcaaac cgagcgtttg
     7441 aacgtgccgc atatcgagat gaaaaatcgg gaatttgtga ttgtgccgat gtttgattta
     7501 acgcctgatt tagtactacc gacaggggaa aaattagccg atatttatgc acaatttaaa
     7561 gatcatcaaa tgattatctt cagctaattt ttcgttttgt tctcactttt ggtgatcacc
     7621 gctcgggatt tctcgtccat cttcacatca atgcggtgat caacgaccac attcatatta
     7681 atcgtaatgc cttcacttgg cgtttcaagc tgtactttcg gcgtacaagc ggtcaaattc
     7741 agtaaaaata ttgcaaaata aaatgtggcc ggtttcatat ttattccatt ctttatcatc
     7801 gttccagttt ttgatagagg taattttcta atttttgttc aaattgtgag ccatagttaa
     7861 ttaagtgcca caaatcaaac agattttctc ggtgattata gtttaaattc acttttgatt
     7921 tattttgatt ggaagataat tttaattttc cgtctaatac taaatcgcct ttcggcccga
     7981 cattaatcag actgcgaaaa tcgttaatcg tgcttttatc tactaaatgt aacaaaattt
     8041 gctcggtgta accacttttc tgcatttctg acaacaattc aggggtaaag gttaaatagg
     8101 aagtttccgc ctgtgtcagt aagccatcgc aaatatagca aggttttccg cttaaccaaa
     8161 acggcaagat agcgttggct ttgcctttga gatcaatttg ctgatattgc ataaattgca
     8221 aaatttgctc aaagtcaatc cgctctaaat tcaggtaagc cagttcggtt tgtggtaagg
     8281 caaagcgttt tacattcagt ttaccgccaa acaaatcaaa ggataattga tttaaattca
     8341 atggcttagc tttggtataa gggtagtaac cgttgagttt cattgaagcg ttatctaatg
     8401 ctaaatcccc cagtttgatt tgggcaattt ttacatcaag cggttttttg gctccgaaat
     8461 gaaagcgtcc gttttggtag cggtagggaa gcgaaaattc aatccctttt gcttcgccat
     8521 taggtaaaga taaaccgccg ttacgaatgg ctaaatgccc accggcaatc agcccgtttt
     8581 tactgccggc actaaacgcc gtttcgcccc gaattgtacc gttgttgatc acccattggc
     8641 tacgaaacgg aaaaagcggc tggaagcctt gagcagattg ctccggccaa taaagtttgc
     8701 cgataatttg gctggcatct tggcttaatt ggcggcgggc gaacagtttg agtgggccga
     8761 gttcggtggt attcaccgct cctttaaaac gtagtttttc gacttcacca tcaaaggcga
     8821 gattcactcg tggtttgggt agcacaccgc cataactgaa ggcaatctca ggtgattgca
     8881 acattaccgc tccgtcaagg gtgaattttt tgacattaaa tcgaatagct tgcgtattgt
     8941 taagcgtgat tttagaaatg gttgtatctg ctaactttac ggtggctaaa tcgcctttga
     9001 gttcttccaa ccgcacaagc tgtttatgcc attgccctct gccgcttaaa ttcactttac
     9061 tgttgaaggc tttgaggata gatgctcccc aaattcgcca tttccaactg tcttttactg
     9121 cgttagcatc tttaggatct tggaaaaaat ctaaggctcc agccttaaaa ttttgtgctt
     9181 gtccgtctaa atggaactcg atattgttaa aatcagggct ttgccctctt aaaattgcgt
     9241 gcagtcgtcc gtgaataccg tgcttgtcaa ttttaattcc ggcaagtgga aaacgtaaat
     9301 cttcaatggt taaataccgc tcttttccgg tcaaacgaag tagggagcta ggcaaaaatt
     9361 ttacgcttaa atcgtcaaaa ttaccttgaa aatccagtgg cacgctactg taaagaataa
     9421 aattgccgtg tttgatatta cccgtcaaac gaagcggtaa attcagccct ttttcggtta
     9481 tttctccgtc tgaattggag attacaatat tgcctttacc ccaactgttt tgggaaagca
     9541 ggctgatacg aatcgccgtt ttgagtggca aaaagccgtt ttggttgaat gatttcggtg
     9601 tgagcttggt gctaacaaac ccttgcagtg gaaattgttg ggtaaagtgc caatcaaacc
     9661 gcccttgttg aatttctagg ctttccccat caaacagaaa agggaaatcc agtttgttat
     9721 tttcactttc ggcaagttca acctgccagt tgccttctaa cttttgtgcg gcattttttt
     9781 gccaactgag aatagagcgc ccttttgcaa ggctttattg gcgatgattt cataagataa
     9841 ttgccaatca tattcagcgg aaatagtggg cggcagttgg gtaaaattgt cctcaatttc
     9901 tgctgaaatc ctaagattat gctgttcttt ttcattcggt tgatatgata aatcggcatt
     9961 caaccgccca tttgcaaaat ttgctgcaaa tttgaccgct tgttgagcgg cagttgcctg
    10021 aatttcacct tttgaaagtg agagtttaat agctgtttgc tcaaaaagcc gctgaagtct
    10081 tgggttgaaa tcggtaggca aatttttcca gttaagggcg tggatagtcg cttcgccatc
    10141 aggaatgacc gccagcaatg cgttgagtga agtgtcggaa ttgctgtgtt cattttgtgg
    10201 aaacaaggca aggcagcggt aatcaatatc caatttatcg acagaaagat ggtttttctc
    10261 aatccaaccc aaatcggttt tatcggcact tagtagcggg caatctcgat aagagagttg
    10321 aaattgagca agtgatgagc cttgccaatt caggtttaag ccttgtggga gttgaacttt
    10381 ccacgctttc ggcaaaatcc agttaatcgg cgtggcaaga tagtggctgg gcattaaaaa
    10441 atagtagatt gccacaacag atagaacggt tgcaatgccg aaaaatttta atgcccgttt
    10501 cataaatcag actacattag cgaaagggta taaaatcgct aacagcgtag caactgtcca
    10561 agcggtcgga tttttgatgt tttttccaag taataaccac gccaacatca ataaaatcac
    10621 aaattgtgct gcaaaataga tgataaatga aagcaatggc atatccggca taatttgtag
    10681 atgttgataa agcacaaaag ctgtccagca ataattgaga atcagcacca caagggcggt
    10741 tttcaccaac agtttgagga aaacatctaa acggcttttc gctaacatta aataccagcc
    10801 ggctaataaa atgcctaaca gcacttgggc gaaattgttg gctcgaatcc cgttaaacaa
    10861 tgaaggcagt tcaaaccaat aaatggctaa atattggata ataccaatac ttgatatagc
    10921 caaaccacaa tacatcaatg tgttatataa ggtttgatct tccggcaggc ggaagtagat
    10981 taagcaggca aaaactgcag caatgcttgc caccgccatt gggttatgct ttggcgtaaa
    11041 gcctatggaa taaaggaaat tccctacggc gaaaataagt aaaaagggta aaataaagct
    11101 taaacggctg gcttgccctc ggcagatttc gcctttccat agcactaaaa aactgattaa
    11161 tgaggtcacg aaaaacgcca ataagtaagg agaaataaaa attgaatttt tcggtgcaga
    11221 gtagaagtta agagccattt caataaacag cattaatacc attggcagtg cagcgtgggt
    11281 tgaaatttca agttttgacg gcgaatcgtg atcgtgagcc atagataatc ccaaaaggta
    11341 taaagaaaat gattttaagc caagattatg ccataatagg ggtcgttttt taacttcagg
    11401 gggaagaaaa tatgcgaatt ttacatacaa tgttacgagt tggagattta gagcgctcaa
    11461 ttaagtttta taccgatgtg ttaggtatgc gtctgttacg tagaagcgag aacgagcagt
    11521 ataagtattc gttagcattt ttaggctatg ccgatgaaag cgaaagtgcg gtgattgagc
    11581 tgacttataa ctggggtgtg gataaatatg agctaggcac ggcttatggc catattgcgt
    11641 taggcgtaga tgatatttac aaaaccattg aagatgtgcg tgcggcaggc ggtaaaatta
    11701 cccgtgagcc gggcccggta ttgggtggaa caactgtgat tgcctttgct gaagatccgg
    11761 acggttataa aatcgaattt attgagaata aagatgcgaa agcagcgtta ggaaactaat
    11821 ttttgcgaat atgaatattc aagcggtcgg atttgtaaaa aattttgcaa atcagaccgc
    11881 ttgtatttta ggttgataga taaatggaac agacaacgga acaaatagat tataaattat
    11941 taaagcatcg ttttcgtggc tatttaccgg ttgtgattga tgtggaaaca gcaggcttaa
    12001 atgcccaaac tgatgcctta ttggaattgg cggcaattac tttaaaaatg gacgagcaag
    12061 gttatctagt gccggatcaa caatgccatt ttcatattgc gccatttgaa ggggcgaata
    12121 ttaaccctga gtcattaaaa ttcaacggca ttgatattga caaccctcta agaggagcgg
    12181 ttgcggagaa tattgcgatt ccggaaatgt tcaaaatggt tcgcaaagca atgaaggagc
    12241 aaggctgcca acgggcggtg attgttgccc acaatgcagc gttcgatcag ggctttttac
    12301 aggctgcgat taaacgaatt aatgccaagc gagatccctt tcaccctttc gcgatgtttg
    12361 acaccgccac ccttgccggt tttatgtatg ggcaaaccgt gttggtaaaa gcctgccagg
    12421 tggcaaaaat cccgtttgac ggtaagcaag cgcattctgc gttgtatgat accgagcgca
    12481 cggcagaact tttctgtgca atggtcaatc gtttaaaaga tttaggtggt ttcccaccat
    12541 tatcggatta acgttattca tttcatttat taacacaatt tctcgtattg tttctataaa
    12601 ttatcctggg agtgatgata gttagtggca agtaccattc tgcaataaat ccagccctgt
    12661 agagttgtag aaaaaataaa aaactatcta tcttcagtta agattacaag cggttggttt
    12721 tttaaccaaa tttggcaaaa atgtgacaaa atagaccgct tgtattcaat aacaatagac
    12781 tattttttgg ctataagcac tttctgtata cccgctattt cgaccctcct tattttttat
    12841 ctaatctaaa aacaagcgtt tccaccttga aatgattaac atgatcctga aactaataaa
    12901 gttcaaacct ttacattagt ttatataata aattataatg attatcattt tataaattaa
    12961 aaggagacat tatgtttaaa cttaaaagta gttttgtact gcttaatgcg gcgctacttg
    13021 ctgcttgttc ctcaaatggt ggaagctttg atgttcaatc tgccaaagtt gaatctcaaa
    13081 cgcaaactac ccccaaaaag ccaagtttac aagatgataa tagtaacgca agacgtacag
    13141 taagcgcttc tgaaactgaa gctttattgc agccggggtt tggtttttca gccaaaattc
    13201 cgcgtcgtaa tctctttccg caggggaagg aagatgtagc ccctattggt gatataaaag
    13261 agattactgg agatctgaca aaaattccgt atgaagaaga ggttaaagcg tacggtagta
    13321 gtgctgatgg atttagccat actcatgata gaaatcataa gttgtatact agagatttta
    13381 attttgttcg ttccggctat gttctgcatt ctggtgcaaa acctgaaata aagcctaaag
    13441 aaattttgag aacaggtgca catgggtatg tttactattt aggtatagag ccggcaaaag
    13501 caatacctac tcaaaaagct acttataaag gatattggga ttttactacc gatgcgagaa
    13561 aagggagaga tagtaaatat ttttctaatt ccgcaggcat caatattggc gccacaccgg
    13621 aaaatagtta cgatattaat gttgatgatt ctgaaaaacc aatggggcat acaggagaat
    13681 ttacggctga ttttgctaat aaaactttaa ctggaacatt ggttcgtaat gggtatgtta
    13741 gtcgtagcaa agagcaaaaa attacaacaa tttacgatat tgatgcaaaa attaaaggta
    13801 atcgcttttc tggtaaagca aacgcaaaaa ataccgatga tccttatttt ggtaaaagct
    13861 ctacgacact tgaaggtgga ttttttggtg ggaaggctca agaacttgcc ggtaaattct
    13921 tagctgatga taagtcggta tttgttgttt ttgctggcaa acgagatgct aaaaaagatg
    13981 atagtgaatc tgcctttgat gctttcaaaa ttaaacttaa agatttaaat aaatctgaga
    14041 tggatacttt cgggaatgcg acacatttga ttattaacaa taagcagatt ccacttattg
    14101 cggaaggcaa aaaaagcttt gccgagatga aatttgatga tttggttacc cgtactattg
    14161 atgataaaac gtatcgagtt tcagtctgct gtaataattt agattatgtc aaatttggga
    14221 cttatagcga gggaaataat agtgatactg ctcaccaata tttagtagga gaacgtacag
    14281 ctgtggcaga tttgccaaca gggacagtaa aatatcgagg tacttgggac ggggtaatgt
    14341 acagtaaatc tggctcggca ggggctgaat cgccaagtaa cagcgaaagt ggtactcgtt
    14401 cactattcga tgtagatttt gtcaataaaa aaattaatgg caagctgatt gctaatgatg
    14461 gtgttgaaga acgcccaatg ctgacacttg aaggcaatct gaaagggaat ggttttgcag
    14521 gcacagccaa aacgggcaat tctggtttta atcttgatcc gaaaagtacg aatggtggca
    14581 cggtagtgca tataaatact caatttgaag ggggctttta tggccctaag gcgacggaat
    14641 taggtggtat tgtacatagt gcagaaacgg ataaagatag agtcagtatt acattcggcg
    14701 gaaaacgtca aatagaaaaa taatcataat tcccctttgc tggttgtaga tagcaagcgg
    14761 gcaatttttt ataaaaattt gcaaaattta aataaaggag accctatcta atgataatga
    14821 aatatcatca ttttcgctat tcacctgttg ccttaacagt gttatttgct ctttctcatt
    14881 catacggtgc tgcgactgaa aataaaaaaa tagaagaaaa taacgatcta gctgttctgg
    14941 atgaagttat tgtgacagag agccattatg ctcacgaacg tcaaaacgaa gtaactggct
    15001 tggggaaagt agtgaaaaat tatcacgaaa tgagtaaaaa tcaaattctt ggtattcgtg
    15061 atttaactcg ctatgaccct ggtatttcgg tggtggaaca aggtcgcggt gcaagtagtg
    15121 gctatgccat tcgaggtgta gataaaaacc gtgtcagctt acttgttgat gggctaccac
    15181 aagcgcagca ttatcatacg ctaggttcag atgctaatgg tggtgcaatt aatgagattg
    15241 agtatgaaaa cattcgttca attgagttaa gcaaaggagc aagttctgcg gaatatggct
    15301 ctggtgcgct aggtggtgct attggttttc gtactaaaga tgcgcaggat attattaaag
    15361 aggggcagca ttggggctta gatagtaaga cctcttatgc cagcaaaaat agccattttt
    15421 tacagtctat cgcagcggct ggtgaggcgg gtggttttga agcacttgtt attgcaactc
    15481 accgacacgg taaagagacc aaaattcatt ccgaggcaaa taaattaaaa cataatattc
    15541 ggcgtataac cggctttgaa aatcgctacg atctttaccc aaattccgca cagaatgctc
    15601 ctggaggatc tttttttatt gtggaagata cttgcccaac attagattgt actcctcgtg
    15661 caagggttaa gttgaaccgc gataatttcc cagtgagaac atttccggaa tatacgcctg
    15721 aagagcgcaa acagcttgag cagattcctt atcgcactga gcagctctca gcccaagaat
    15781 ataccggtaa agatcgcatt gcaccaaacc ctttagatta caagagtaat tctgttttta
    15841 tgaagtttgg ctatcacttt aactcgtctc attatcttgg cgcaatctta gaagatacaa
    15901 aacaacgcta cgatatccgt gatatgcaaa cgccagctta ctatacaaaa gacgatatta
    15961 acttatcact taggaactat gtttatgaag gggataatat tttagatggc ttagtgttca
    16021 agccaaggat cccttatggg ttgcgctata gccatgtgaa gttttttgat gaacgtcacc
    16081 acaaacgtcg tttaggattc acctataaat ataaaccaga gaataatcgc tggttggata
    16141 gcattaaact cagtgcggat aaacaagata ttgaactata tagccggcta catcgcttgc
    16201 attgtagcga ttatcctgtg gtagataaaa attgccgccc gactttggat aaatcttggt
    16261 ctatgtatcg aactgagcgt aataattacc aagaaaagca tcgtgtcatt catttagaat
    16321 ttgataaagc gctaaatgct ggtcaaggcg tatttaagca aacccacaaa ctgaatttag
    16381 ggttgggctt tgatcgattt aattcgctta tggatcatgg ggatatgact gcccaatata
    16441 ccaaaggcgg ttataccagc taccgcggta gagggcgttt agataatcca tatatttatc
    16501 gccgcgatcc acgcagtatt gaaacggtat ctttgtgtaa taatacacgc ggcgacatct
    16561 taaactgtga accgcgtaaa attaaaggcg atagccattt tgttagcttc cgcgatctag
    16621 tgataagcga gtatgtggat ttgggattag gggtgcgttt tgatcaacat cgatttaaat
    16681 ctgatgatcc gtggacactt agccgaactt atcgaaattg gtcttggaat ggtgggatta
    16741 cgcttaaacc aacagagttt gtatcgcttt cttatcgcat ttcaaacggt tttagagtgc
    16801 ctgcattcta tgaactttat ggtaaacgta atcatattgg gcttaaagat aacgaatatg
    16861 tgcaacgcgc gcaacgtagc caccagttag agccagaaaa atcgactaat catgagattg
    16921 gagttagctt taaaggtcaa tttggttacc ttgatgtgag ctatttccgt aataactata
    16981 aaaatatgat tgcgacagca tgtaaaagaa taatacaaaa atcacactgt ttctataact
    17041 accataatat tcaagatgta gcactaaacg ggataaattt agtcgctaaa tttgacttac
    17101 acggtatttt atctatgctg ccagatggtt tttattcatc agttgcttat aaccgtgtaa
    17161 aagtaaaaga gcggaaacta accgactcaa gactcgatag cgtaaacgat cctattctag
    17221 atgcgattca gccagcacgc tatgtgcttg gattcggcta cgatcaccca gaagaaaaat
    17281 ggggaattgg cattactacc acctattcta aagccaaaaa cgccgatgag gtggcaggca
    17341 cacgtcatca cggcatacat cgcgttgatt taggtggcaa actgaccggt tcttggtaca
    17401 cccatgatat taccggttac atcaattata aaaactacac cttacgtgga ggaatttata
    17461 atgtgactaa tcgtaaatat tccacttggg aatcagtgcg ccaatccggt gtgaatgcag
    17521 taaaccaaga ccggggtagc aattacactc gatttgccgc tccggggaga aatttcagtt
    17581 tagcatttga aatgaagttt tagacggcaa aataaaatag aaaaacgctg aatagtatat
    17641 tcagcgtttt ttgttggctc taactaatta catacgaatt aaaatcgtgt tttaacggtc
    17701 ggttagatta acccataccg tattttttta attttttgcg taatgtgcca cggttaatgc
    17761 ctagcattgt tgctgcacga gtttgattgc cgcgagtata ttgcatcacc atatctaaca
    17821 ttgggtgttc gatttcagat aatactaatt cgtataattc tgttggatct tcaccattta
    17881 attgagataa atagtttttt aatgctgctt tcacattatc gcgaagtggt ttattaacct
    17941 gctgcgcttg tgcatttaac attgttactg ttaatgggtt ttgtgtaggt tgttgctcta
    18001 acattttttt atccaacttt tcttaattga gattctaaat gaatcgattt aacaaaatct
    18061 tctaatgcat aaagttgctc ttttgtggaa cttagtgtat taaaagtgcg tttaaaattt
    18121 gattccggat ttaatttttc ggtataccaa ccaacatgtt ttcgtgcaat acgataacct
    18181 ttttcttcac cataaaattg gtgcaaatcc tcaatatgtt taaacattaa ttggtatttt
    18241 ttatcaattg ataatggtga agataatcca gtttcaaaaa aatcattaat ttccttaaat
    18301 atccaaggat ttccaaagct agcgcgccca atcatgattg catcggcttt ggtatagtcg
    18361 agaacaaact ttgctttttc cgcagagtca atgtctccgt ttgctatcac tgggatagaa
    18421 attgcttctt ttactgcctt aatactttca tattcagctt cgccattaaa taaacagctt
    18481 cgagtacgcc cgtgaatagt gagagctttt atgccggctt gttctgcaat tttcgcaatt
    18541 tgcagacaat ttctattttc ctgatcccaa cctgttctaa tttttagtgt cacagggaca
    18601 tcaacggcat tgactacaga atctaatatt tgagcgacta atttggggtt acgtaaaaga
    18661 gcagagcctg ccatattttt attcaccttt tttgccgggc aacccatatt aatatcaata
    18721 atatcggcac catactcaac atttatcttt gcagcctttg ccatttcaac aggatcagaa
    18781 cctgcaattt gtacggcatt taagcctatt tcatcgtggt gtgctaaccg caatcgtgat
    18841 ttctcagtat gccatacatc aggattggta gacatcatct ctgaaaatgt taaacctgct
    18901 ccaagttggc tacataagcg gcgaaaaggc tgatctgtga ttccagccat aggtgcaagg
    18961 aaaatacgat ttttgattgc atattgtcct atttgcattt ttaacctttt attaacaaat
    19021 ttgaagtaat tttaaccaga
//
LOCUS       DANLVT010000040        18802 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.040, whole genome shotgun sequence.
ACCESSION   DANLVT010000040 DANLVT010000000
VERSION     DANLVT010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18802)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18802)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18802
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.040"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(65..901)
                     /locus_tag="PXC99_001178"
     CDS             complement(65..901)
                     /locus_tag="PXC99_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HDL5417637.1"
                     /translation="MLPHIYIGTGGYADTDLIGTLYPFGTAKEDFLFVYSQHYDTLEI
                     NSTFHAPIGQKAFEGMVQKAEGRLNFSVKLHQDFSHQRTATLDQAQLFLNALAPFTAE
                     GLLANLFVQFPTQFERMPLNRRYLAELCQWFADYPLAIEFRHPSWHIPAVFDTFAKSS
                     NLIWCNVDYPQNIGLPAFHFFANQRTAYLRLHGRNPNWWKGQSAAERHDYRYSDEELK
                     GLAELLFSRRTEFDRLYLYFENTTKSHAFYNIQTLKGFLAEKGFQIKPVPENLLGQQS
                     LF"
     gene            1009..1884
                     /locus_tag="PXC99_001179"
     CDS             1009..1884
                     /locus_tag="PXC99_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5417638.1"
                     /translation="MWIWFTLLAAVAQAGRNAFQKQLSVNVPVLGVTLARFFYAVPLA
                     SGYLYFLYQYDDNLNIPHFPPLFFVYAIGAGLAQILATSLMVQLFHLKNYAIGVGLAK
                     SEAVWAALLGVLFFGVTISGIGWLGVVLGGVAIFLMTGSGNLRQLSWKTLFLGIASGL
                     CFALTSLWVREASLQLNSHYLLSAAWVLFSVISFEAVILVIYLALLQKETLIKFFRFP
                     KLGMLTSLFSFLGSFGWFNAMSLNHVAFVKTLGQVEIFFILGISYFVFKERLKIQDFI
                     GLILVVIAAILVVLG"
     gene            2020..2460
                     /gene="nudB"
                     /locus_tag="PXC99_001180"
     CDS             2020..2460
                     /gene="nudB"
                     /locus_tag="PXC99_001180"
                     /EC_number="3.6.1.67"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate diphosphatase"
                     /protein_id="HDL5417639.1"
                     /translation="MNYKNPHSILVVIYAKNTQRVLMLQRKDDPDFWQSVTGSINIGE
                     TPLEAAEREVSEETGLQTFEQKQPLVDCQKQIEFEIFPHFRYKYAPNITHCVEHWFLL
                     PLDSEQEPILTEHLAYRWVSVEDAVRLTKSPNNAQAIQEYLTSK"
     gene            2473..3213
                     /locus_tag="PXC99_001181"
     CDS             2473..3213
                     /locus_tag="PXC99_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5417640.1"
                     /translation="MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDTS
                     SNPRLRAAVDKALSSNMTRDTINRAIERGVGGGDDTNMETKIYEGYGPGGTAVMVECL
                     SDNANRTISQVRPSFTKCGGNLGTEGSVGYLFSKKGLILVANADEDALTEAAIEAGAD
                     DIQPQEDGSFEIYTAWEDLGSVKDGIEAAGFKIENAEVTMIPSTTVELDAETAPKLLD
                     LINRLEDCDDVQNVYHNGEISDEVAALL"
     gene            3343..3870
                     /locus_tag="PXC99_001182"
     CDS             3343..3870
                     /locus_tag="PXC99_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417641.1"
                     /translation="MKLVKFVPALAATLVLAACSNANTQSAPQQAQDAVTKVAEQATQ
                     QVNEIAGNAPRASGAVKVEKATDGAKSIVYRCQSGKRVTANYVFQGEEAKAVNLLVQS
                     GGKTQKIPTLTRDASNQDSTSFKTDKYSWDLDTGFTLSSNGQSGMLTKYGAKTDTIVA
                     KLCDVDKALTSKLNK"
     gene            3937..4515
                     /gene="ruvC"
                     /locus_tag="PXC99_001183"
     CDS             3937..4515
                     /gene="ruvC"
                     /locus_tag="PXC99_001183"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HDL5417642.1"
                     /translation="MAIILGIDPGSRVTGYGVIRQNGRQLEYLGSGAIRTTAEDLPTR
                     LKRIYAGVSEIITQFQPNMFAIEQVFMAKNPDSALKLGQARGTAIVAAVNHDLPVFEY
                     AARLVKQTVTGIGSADKVQVQDMVTRMLKLSAKPQADAADALAIAITHAHSIQHSLIV
                     AKQSQQNVSSEKEQILALMKTRYSRGRFRLKG"
     gene            complement(4581..5861)
                     /gene="murA"
                     /locus_tag="PXC99_001184"
     CDS             complement(4581..5861)
                     /gene="murA"
                     /locus_tag="PXC99_001184"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HDL5417643.1"
                     /translation="MEKFRVYGPFSLNGTVDISGAKNAALPILFAAILAEKTVTLKNV
                     PDLKDVDTTFKILRQLGVTVEKGSDKGVVHIDASKINNYVAPYELVKTMRASIWALAP
                     LVARFQLGQVSLPGGCTIGARPVDMHISGLEKMGAKIELDEGYVKATSNGRLNGARIY
                     MDKVSVGATLSVMMAGTLAKGTTVIENAAREPEIVDTADFLNAMGAKISGAGTDMITI
                     EGVEHLGGCEHSVVPDRIETGTFLVAAAISGGRITCRNTKADTLDAVIEKLREAGMQV
                     DVTENTITLDSLGRRPKAVNIRTMPHPGFPTDMQAQFTLLNTVAEGTSRITETIFENR
                     FMHIPELIRMGAKAEIEGNIAICYGVEQLKSAEVMATDLRASISLVLAGCIATGETIV
                     DRIYHIDRGYEHIEEKLRQIGARIERFSAPFEGE"
     gene            complement(5971..6231)
                     /locus_tag="PXC99_001185"
     CDS             complement(5971..6231)
                     /locus_tag="PXC99_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA/IbaG family iron-sulfur metabolism protein"
                     /protein_id="HDL5417644.1"
                     /translation="MNPSQIEEILKQALSDATEVHAQGENAHFGVIVVSDSIASLSKV
                     KQQQAVYAPLAEYFTTNAIHALTIKVFSVEKWKTERLLNMVG"
     gene            complement(6264..6587)
                     /locus_tag="PXC99_001186"
     CDS             complement(6264..6587)
                     /locus_tag="PXC99_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HDL5417645.1"
                     /translation="MPQKTLQWDIQQNNESLFVKLSGELTRNTLLPLWKQRASFLSPT
                     GKQSLYWDLKEITRIDSAGFTLLAELLNHYHKIIPNSLINTPDSVRTLAALYDLDGWF
                     EQFII"
     gene            complement(6599..7234)
                     /gene="mlaC"
                     /locus_tag="PXC99_001187"
     CDS             complement(6599..7234)
                     /gene="mlaC"
                     /locus_tag="PXC99_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HDL5417646.1"
                     /translation="MLKNIKKIIVTGLVAVSALFSTTAFAETSPYVLMQQTADKLFGD
                     IKANQAKIKSNPEYLRTIVRNDLMPHVHVKYAGQLVLGKNLSAATDAQKEAFFNAFGQ
                     FVEQSYAQVLTQYQDQSVQIESPKSVDGKSIVSIRVNVSGKGAAQPIKLDFKWRKNSK
                     TGEWQAYDMAAEGVSMVATKQNEWAGVIRQKGIDALIAQVAQSAKQPITLK"
     gene            complement(7280..7804)
                     /gene="mlaD"
                     /locus_tag="PXC99_001188"
     CDS             complement(7280..7804)
                     /gene="mlaD"
                     /locus_tag="PXC99_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
                     /protein_id="HDL5417647.1"
                     /translation="MRQSIKYEFWVGLFVLLGLAALVFLGLRVANVQGFSNEKTYTLY
                     ATFDNIGGLKVRAPIKVGGVVVGRVADISLDNKTYTPKVALAVNESFNQIPDTSSLSI
                     KTSGLLGEQYVALNVGFVIEGETAMMKEGDTFVDTNSAMVLEDLIGQFLYGDKKSDKT
                     EDEKASDSAEPKAE"
     gene            complement(7825..8601)
                     /gene="mlaE"
                     /locus_tag="PXC99_001189"
     CDS             complement(7825..8601)
                     /gene="mlaE"
                     /locus_tag="PXC99_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance ABC transporter
                     permease subunit MlaE"
                     /protein_id="HDL5417648.1"
                     /translation="MVNFISSIGAVVINFIRTLGRSAFMLWGALIGKPEFRKHTPLLI
                     KQLYVLGVQSLLIIMLSGLFIGMVLGLQGYVVLVDFAAESSLGTLVSLSLLRELGPVV
                     TALLFAGRAGSALTAEIGLMKATEQLSSLEMMAVDPLRRIIAPRFWAGVISMPVLAAI
                     FTAIGIWGGSLVGVDWKGVDGGSFWSVMQNSVNTSDLINGFIKSVIFAFAVVWIALFN
                     GYDCVPTSEGISQATTRTVVNASLVILGLDFILTAIMFGG"
     gene            complement(8594..9397)
                     /gene="mlaF"
                     /locus_tag="PXC99_001190"
     CDS             complement(8594..9397)
                     /gene="mlaF"
                     /locus_tag="PXC99_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid ABC transporter ATP-binding protein
                     MlaF"
                     /protein_id="HDL5417649.1"
                     /translation="MTKTENLVEVKNLTFKRGERVIYDNLNLQVQKGKVTAIMGPSGI
                     GKTTLLRLIGGQILPESGEILFDGRDICKANNKELYEIRQRMGMLFQSGALFTDISTF
                     DNVAFPIREHTRLPEELIRKLVLLKLEAVGLRGAANLMPSELSGGMARRAALARAIAL
                     DPDLIMYDEPFTGQDPISMGVIVELIKELNQALNLTSIVVSHDVKEVLSIADYAYIVA
                     DKRVIAEGTPEILQASEDPQVVQFLAGKADGPVRFHYPAKDYTEELFNG"
     gene            9622..11016
                     /locus_tag="PXC99_001191"
     CDS             9622..11016
                     /locus_tag="PXC99_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Do family serine endopeptidase"
                     /protein_id="HDL5417650.1"
                     /translation="MNKTMKKSFLTAFILGSTIAAMPAYAEATLPTAVNGQAVPSLAP
                     MLEKVRPAVVSIAVEGKTKGDSRRSREIPEEFEFFFGPHADLFGNRSSAPRNFRGVGS
                     GAVINAEKGYVITNNHVIDNADKITVKLEDGREFKAKLVGADPLSDVALIQVEDPKNL
                     TEIKFADSDKLQVGDFTVAIGNPFGLGQTVTSGIISALGRSTGQSDEGYENYIQTDAA
                     VNQGNSGGPLINLNGELIGINTAIISPSGGNAGIAFAIPSNMANSLVTQIIEFGEVKR
                     GMLGIKGGELNADLAKEFNISTQQGAFVSEVLPDSAAAKAGFKAGDVITEINGQKIRS
                     FSELRAKVATSGVGKEIELTYLRDGKEAKAKVTLQSDSEAKVTASNLIPALKGADFNN
                     YNAKGIKGVEISNVEKGSIAEMRSLKKGDIIIGVNRHSVENIADLRKILETKPSVVAL
                     NIVRDGANFYVILQ"
     gene            complement(11068..11829)
                     /locus_tag="PXC99_001192"
     CDS             complement(11068..11829)
                     /locus_tag="PXC99_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C biogenesis protein"
                     /protein_id="HDL5417651.1"
                     /translation="MKTREQLSQENYQQAVKFAQHFADDVRQEFEREAEQRYQFERTQ
                     FEQSVLQNNAQNRPLAKIASLSCVAILLLAMTYYGLSGRYQVVQSGLQQHQDFQQQMS
                     DAHGTSKNERYILSLQNQLRENPNNGDLWYELGQAYALSNDFDSALVCYDNAEKLLGK
                     RAAILGAIATARYYDNGQKMTVEIQAIIEQALQLDKNENASLLLLASDSFLNNNFQQA
                     LDNWRKVLDSNNDSINRRAIIQSMEMARQMLNSQQ"
     gene            complement(11816..12268)
                     /gene="nrfF"
                     /locus_tag="PXC99_001193"
     CDS             complement(11816..12268)
                     /gene="nrfF"
                     /locus_tag="PXC99_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfF"
                     /protein_id="HDL5417652.1"
                     /translation="MRNSIISIGFLQKIRKILPLVFGLLLFVGTVQAEMVDTFQFQNE
                     ADRVRAISLARSLRCLQCQNQNLVESNATAAYNMRIEVYEMVNQGKSNEEIIRIMTER
                     FGSFVNYDPPFTPQTWVLWGLPVGLFSLLFLAILWRTRKNKGNKNENA"
     gene            complement(12258..12791)
                     /locus_tag="PXC99_001194"
     CDS             complement(12258..12791)
                     /locus_tag="PXC99_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HDL5417653.1"
                     /translation="MKKILLLIPLLLLVVIVGFLTVPLMNKDALAPTEDWQGKPFPEF
                     VGKNLLDSNAHLNNNSLPKEPYILNVWVSWCTWCIKEFPILLELKQKGVPIVGLTYSD
                     RPNDALNALKNWGNPFSLIIDDYEKGFLIQTLKVSSAPSSYLIDKHGVVRYQQKGYNP
                     DFAQDFLPKLEALRNEK"
     gene            complement(12788..14692)
                     /gene="nrfE"
                     /locus_tag="PXC99_001195"
     CDS             complement(12788..14692)
                     /gene="nrfE"
                     /locus_tag="PXC99_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfE"
                     /protein_id="HDL5417654.1"
                     /translation="MLPELGYFSLLLAAISAIFQVGFALLGEVRKQYHWLALAPLFTY
                     LQAAFTTFSFSTLAYAFLTDDFSVIYVAAHSNSQLPDFFKFAATWGGHEGSMLFWLTA
                     LVIWSAVFCKFSQKIDRLFANRTLAMLGLIALGFLLFILLVSSPFERGFPPPPEGRDL
                     NPMLQDIGLIFHPPLLYLGYVGFAVSFAMIVAALVSGGMDAAIMRWLRPWTMISWGFL
                     TAGIILGAWWAYYELGWGGWWFWDPVENASLMPWLLGTALVHSLIVSQQRGIFYYWTI
                     LLAIFAFALSLLGTFIVRSGVLTSVHAFAVDPDRGMALLILFFGLSFIALALFAFRAN
                     LWQGKVRFNLLSKETAFLLINGLFSVAASVVLLGTFYPMIFTVMNWGSISVGAPYFNS
                     VFTPLALLLMIVMGFAVVLGWKQISNKQILVKLWLLPIAVGLALGLIYASISQREHFA
                     LQPLPTIFISLAIWIILTHLPYSQKMWQIRPLAMRLAHIGFAVCVIGAMMNSYYGDEI
                     GVRLKPNQAAELAGYTFKYEDYHDLIGPNYTAEQAVFSISRDEQLLATVTPERRYYDV
                     RTMTMAEVGLFHHNLDDIYIVMGDKFGNLEYAFRLHYKPYVQALWLGGMMMVMAALLA
                     LFGYRRENKK"
     gene            complement(14962..15909)
                     /gene="nrfD"
                     /locus_tag="PXC99_001196"
     CDS             complement(14962..15909)
                     /gene="nrfD"
                     /locus_tag="PXC99_001196"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase subunit NrfD"
                     /protein_id="HDL5417655.1"
                     /translation="MNEYVPFQTPNLVWDGTIAIYLFLLGISSGAVQLAIAYRNSGVK
                     MEKPSQNWIIRSAAILGTLPTIIGLLLLIFHLTKPWTFWKLMFNYNFTSVMSMGVMLF
                     QLYMAVLVVWIAIMFKDWIVRYLPVVSGLIDFAEAKLLKPIEFILFVLAAVLGAYTGF
                     LLSALVSYPMLNNPVLPALFLASGASSGIAATFLVILLAGKLSGESHEVHFMHKFEVP
                     IMVTELGLIVAFFVGLHFGGADKSLALTHALNGFWGNVFWIGVMLIGIAIPLVANIFG
                     SHRLKHNVKFIILISVFDLIGVLCLRYFILYAGQLTVAS"
     gene            complement(15909..16586)
                     /gene="nrfC"
                     /locus_tag="PXC99_001197"
     CDS             complement(15909..16586)
                     /gene="nrfC"
                     /locus_tag="PXC99_001197"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase Fe-S protein"
                     /protein_id="HDL5417656.1"
                     /translation="MTCTRRDFVSGAGAIAVVASTGLATSITLATEKEQKKIRYAMVH
                     DETACIGCTACMDACRTTNKVPEGVSRLEIIRSEPFGEFPNVQYEFFRQSCQHCTNAP
                     CVSVCPTGASFIDPETGIIDVHSDLCVGCQYCIAVCPYRVRFIHPEKKSADKCNFCRD
                     TNLAEGKQPACVEACPTKALTFGDMNDPSSDIFHKVKNNPVYRTKTALGTEPNLYHIP
                     FGKGEHR"
     gene            complement(16586..17242)
                     /gene="nrfB"
                     /locus_tag="PXC99_001198"
     CDS             complement(16586..17242)
                     /gene="nrfB"
                     /locus_tag="PXC99_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase pentaheme
                     subunit"
                     /protein_id="HDL5417657.1"
                     /translation="MKKLISKAGRAVALIQAVVFAGFFAISSANALMPEQPKPLWQSE
                     TADDAKVAQDARRDPNKYCTQCHESANATGKPFHHAGKHFQKDVKSPNNGEPLTCISC
                     HGNISESHRKGAKDVMRFNPHGKASNPSLERSVNEQNQVCFACHTAEKLREKFWAHDT
                     HATKIACTNCHEIHPEKDPMKDIPEKDRIKLCTDCHTKIHSGEFKNPEMKATEAKGTK
                     "
     gene            complement(17261..18763)
                     /gene="nrfA"
                     /locus_tag="PXC99_001199"
     CDS             complement(17261..18763)
                     /gene="nrfA"
                     /locus_tag="PXC99_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming nitrite reductase cytochrome
                     c552 subunit"
                     /protein_id="HDL5417658.1"
                     /translation="MKFLIKSLAVATISILGCLQTALAEEAKTESLTDKAVKHEKLGV
                     KIESANHLFAEKYPLQYDSWKSTAKSTDRGSALEADPRYVILWAGYAFAKDYNKPRGH
                     FYAVTDVRDILRTGAPKDENDGPQPMACWTCKGPDVPRLIEEKGERGYFDPKWAKYGA
                     EIVNSIGCADCHDTTSEEFKQGKPALRVARPHVLRALNTVGWKFEDLDKHGKRPAVCA
                     NCHVEYYFKNKTDVTFPWDKGVDVDSIEKYYDEINFTDWTHALSKAPMLKTQHPDFEV
                     WSQGTHGKNGVTCIDCHMPKVKDKDGKVYTDHKIGNPFDQFEATCKTCHEQSKETLEK
                     RVKEYKHEVKEAMIRLEDQLVKAHFEAKAAWEAGATQEEMKEILMAIRHAQWRWDYSA
                     AGHGNHFHAPDVMLRTIATGIDRAADARAKLGVVLAKHGVTTPVAIPDISTKEKAQLA
                     IGLDIPKEQAAKDEFLKTVVPQWEKEARAKGLLPAEEADKPVAAPKAEAK"
BASE COUNT         5535 a         4147 c         3783 g         5337 t
ORIGIN      
        1 taagggctat ccattactaa atggcatggc cctttattta ctcctcaaca atgtaaatta
       61 cccatcaaaa caaactctgc tgcccaagca aattctccgg cacaggtttg atttgaaatc
      121 ctttttccgc caaaaagcct tttagggttt gaatattata aaaggcgtgg cttttagtgg
      181 tgttttcaaa gtagagatag agcctgtcaa attccgttct gcggctaaaa agcaattctg
      241 ccaagccttt taattcctcg tctgaatagc ggtaatcgtg gcgttctgcc gcactctgcc
      301 ctttccacca attcgggtta cgaccatgta agcgtaaata agcagtacgt tggttggcaa
      361 aaaagtgaaa tgccggtaag ccgatatttt gtgggtaatc cacattacac caaatcagat
      421 tagagctttt cgcaaaggta tcaaacaccg ccggaatatg ccagcttggg tggcgaaatt
      481 caatcgctaa cggataatcc gcaaaccatt ggcacaactc ggcaaggtaa cggcggttaa
      541 gtggcatacg ttcaaattga gttgggaact gaacaaataa atttgccaat aacccttcag
      601 cggtgaacgg agctaacgca ttaagaaata attgtgcttg atctaaagtc gccgtgcgtt
      661 gatggctgaa atcttgatgc agtttcaccg aaaaattcag ccgaccttcc gctttctgca
      721 ccattccttc aaaggctttc tgcccgatgg gggcgtggaa tgtgctgtta atttccagcg
      781 tgtcgtaatg ttggctatag acaaagagaa aatcctcttt tgcagtgccg aatgggtaaa
      841 gcgtgccgat taaatctgtg tcggcatagc cgccggtgcc aatataaata tgagggagca
      901 ttgtgtttat tctttcaatt ttttgcaaat tttaatggtt ttttaaccgc ttgcaaactg
      961 agaataaaag agtaagattt ggctatcttt tcttatttca tcatcattat gtggatttgg
     1021 tttactctgc tggcagccgt ggctcaagcc ggtcgcaatg cctttcaaaa gcaattaagc
     1081 gtcaatgtgc ctgtattggg ggtaacgctc gcccgctttt tctatgctgt gccgttggca
     1141 agcggttatc tctatttttt ataccaatat gacgataacc tcaacattcc ccattttcca
     1201 ccgctgtttt ttgtatatgc tatcggggct gggttggctc aaattctggc aacttcgcta
     1261 atggtgcaac tttttcactt aaaaaattat gcaataggtg tcgggctggc gaaaagcgag
     1321 gcagtatggg cggctttact gggcgtgtta ttttttggtg taaccatcag tggcattggc
     1381 tggcttggcg tggtactagg tggagtggcg attttcttaa tgaccggcag cggtaatcta
     1441 cgccaacttt cgtggaaaac actctttctc ggcatagcca gcggtttatg tttcgccctc
     1501 acatcacttt gggtgcgaga ggcaagcctg caactcaaca gccactattt gctttcagcg
     1561 gcgtgggtac tttttagcgt gattagcttt gaggcagtga tattggttat atacctagct
     1621 cttctccaaa aagagacact gattaaattc tttcgttttc caaaattagg tatgttgacc
     1681 agcctgtttt catttctcgg ctcattcggt tggttcaatg caatgagcct gaaccacgtt
     1741 gcctttgtaa aaacgcttgg acaagtggaa attttcttta ttctcggtat ttcctatttt
     1801 gtgtttaaag aacggcttaa aattcaagat tttatagggc tgattttagt agtgattgcc
     1861 gcaatcttgg tggtgctggg ctagatcgga tttttacgtt ttttatctag ctttgtaggg
     1921 tgggcgtaag cccacgcaaa accaataaat catttatccg tgggcttacg cccaccctac
     1981 gatacctaaa aaaattaaat ttcacatctt agtaataaaa tgaactataa aaatcctcat
     2041 agtatccttg tggtgattta tgctaaaaat acccaacgag tattgatgct acaacgcaag
     2101 gacgatcctg atttttggca atcggtgacc ggttcgatca atattggaga aacaccgctg
     2161 gaagcagcag aacgggaagt gagcgaagaa accggtttgc aaacttttga gcaaaaacaa
     2221 ccgcttgttg attgccaaaa gcagatagaa tttgaaattt tcccgcattt tcggtataaa
     2281 tacgcaccta atatcacaca ttgtgtcgaa cattggtttt tgctgccact tgatagtgag
     2341 caagagccta ttttaaccga acatttggca tatcgttggg tttcagtgga agatgcggtt
     2401 cgactgacta aatctcccaa caatgcccaa gcaatacaag aatatttaac atcaaaataa
     2461 ggaaacaaca gaatggcagg ccatagtaag tgggcaaata ttaaacaccg taaagcggca
     2521 caagatgcac aacgcggtaa aatttttact aaattaattc gtgaattggt gactgccgcc
     2581 aaactcggcg gtggtgatac ctcttccaac cctcgtttgc gtgcggcggt ggataaagcg
     2641 ttatccagca atatgacccg tgataccatc aaccgtgcaa tcgagcgtgg tgtaggcggt
     2701 ggcgatgata ccaatatgga aaccaaaatc tacgaaggtt acggcccggg tggtacagca
     2761 gtgatggtgg aatgtttaag tgataacgct aaccgtacga tttcccaagt tcgtccaagt
     2821 ttcacaaaat gtggcggtaa cctaggtact gagggttcgg taggttattt atttagcaaa
     2881 aaaggcttaa ttttagtggc aaatgccgat gaagatgcct taactgaagc tgctattgag
     2941 gccggtgcgg acgatattca accacaagaa gatggtagct ttgaaattta taccgcttgg
     3001 gaagatttag gctcagtgaa agacggcatt gaggctgcag gctttaaaat tgagaatgca
     3061 gaagtaacaa tgattccatc aactaccgtt gaacttgacg cagaaactgc accaaaactt
     3121 cttgatttaa tcaaccgcct tgaagattgt gatgatgtac aaaacgttta tcacaatggt
     3181 gaaatcagtg acgaagtcgc tgcattactg taataaaaaa atcacgcaaa ataagcataa
     3241 tttaggttat gcttattttt tatgaacttt tttcctatat tactgactaa cctaatgtag
     3301 tttatatgct actactttac tataacattt taaggagagt ctatgaaatt agtgaaattt
     3361 gtccctgccc tagcagcaac tttagtatta gccgcttgct ctaatgcaaa cacacaatct
     3421 gctcctcagc aagctcagga cgctgtgact aaagtggctg aacaagcaac acagcaagtg
     3481 aatgaaattg caggtaatgc acctcgtgca agtggtgcag taaaagtaga aaaagcaact
     3541 gatggtgcaa aatcaattgt atatcgttgc caaagtggta aacgtgtaac tgcgaattat
     3601 gtcttccaag gagaagaggc aaaagcagta aatctattag tccaaagcgg cggtaaaaca
     3661 caaaagatcc caacattaac tcgtgatgcc tcaaaccaag attctacttc attcaaaacg
     3721 gataaatatt cttgggattt agacacaggc tttaccttat catctaatgg ccagtcaggt
     3781 atgctaacca agtatggtgc taaaacagat accatcgttg ctaaattatg tgatgtagat
     3841 aaagcattaa cctcaaaatt aaataaataa tctttcttga ttttactact cataagcgag
     3901 aagataatat cttctcgctt attttattgc acaaagatgg ctattatttt aggaattgac
     3961 cccggctcaa gggtaacagg ttacggtgtg attcgccaaa acgggcgaca gctggaatat
     4021 ttaggaagtg gggctattcg aaccacggct gaagatctgc ctacccgctt aaaacggatt
     4081 tatgcaggcg tgagtgaaat catcactcaa tttcaaccaa atatgttcgc catagagcag
     4141 gtatttatgg caaaaaaccc tgattctgcc ttaaagctcg ggcaggctcg aggaacagcg
     4201 attgtagcag cggttaatca cgatttacct gtgtttgaat atgccgcccg attagtcaaa
     4261 caaaccgtta cgggaattgg ttctgctgat aaagtacaag tgcaagatat ggtaacccgt
     4321 atgcttaaac tctccgccaa accacaagcc gatgcggctg atgcattagc cattgcgatt
     4381 acccacgctc attcaatcca acattcactg attgttgcta agcaaagcca gcagaatgtg
     4441 agtagtgaga aagagcaaat tttagcacta atgaaaaccc gttatagccg gggaaggttt
     4501 aggttaaaag gctaactcaa tataaaatga ccgcttggaa ctaatgtttc aagcggtcat
     4561 tttttgagaa aattttacaa ttactcgcct tcaaaaggag ctgagaaacg ttcaattctc
     4621 gccccaatct gacgtaattt ttcttcgatg tgttcatagc cacggtctat gtggtaaatt
     4681 ctatccacaa tcgtttcacc cgttgcaata cagcctgcca acactaagct gatggaagca
     4741 cgcaagtcag ttgccattac ttctgctgat tttaactgct ctacaccata gcaaattgca
     4801 atattacctt caatttccgc tttggcaccc atacgaatca gctcaggaat atgcataaaa
     4861 cggttttcaa aaatcgtttc tgtaatacgg cttgtgcctt ctgcaactgt atttaataag
     4921 gtaaattgag cttgcatatc agttgggaaa cctgggtgtg gcatagtgcg aatgttcact
     4981 gctttcgggc gacgacctag agaatcaagc gtgatagtat tttccgtcac atcaacctgc
     5041 attccagctt cacgtaattt ttcgatcact gcatcaagag tgtctgcttt ggtgttacgg
     5101 caagtaattc gaccaccgga aatagccgct gccactaaaa atgtaccggt ttcaatacga
     5161 tccggcacta cgctgtgttc gcaaccgcct aaatgctcaa ccccttcaat ggtaatcata
     5221 tcggtacctg caccagaaat tttagctccc atcgcattta agaaatcggc agtatctaca
     5281 atttcaggct cacgagcagc attttcaata acagtagtac cttttgctag agtacctgcc
     5341 atcatcaccg ataaagttgc tcctacgctc actttatcca tatagattct tgcaccgttt
     5401 aaacgaccgt ttgaagttgc tttgacatag ccttcatcaa gctcgatttt cgcccccatt
     5461 ttttcaagac cggaaatgtg catatctacc ggtcttgccc cgatagtaca accgcccggt
     5521 aaagaaactt gcccaagttg gaaccgggca actaatggag ctaacgccca aattgaagca
     5581 cgcattgttt tcactaattc gtaaggtgca acgtaattat tgatcttact cgcatcaata
     5641 tgtaccacgc ctttatcgct acctttttca accgttaccc ctaattggcg taagatttta
     5701 aaagtggtgt ccacatcttt taaatcaggc acatttttta acgtaactgt tttttcagcc
     5761 aaaatagcgg caaataaaat agggagtgcg gcatttttcg cacctgaaat atcgacagta
     5821 ccatttaaag aaaatggacc atacacacga aatttttcca tttgggagat cctaaaaaat
     5881 aataatttgt aggggcgaaa aatttttcgc ccaattttcc aacgtttaca aaagagtttg
     5941 ggcgaatagt gattcgcccc tacatttcat ctatccaacc atatttagca aacgctcagt
     6001 tttccatttt tccacgctga atactttaat ggttaaagcg tgaatcgcat tagtagtgaa
     6061 atactcagct aaaggggcat aaacagcttg ctgttgtttt acttttgaaa gagaagcaat
     6121 gctgtcactt actacaataa cgccaaagtg ggcattctcg ccttgagcgt ggacttctgt
     6181 tgcatcagat aatgcttgtt ttaaaatttc ttcaatttgt gatggattca ttctgacttc
     6241 ctaaaatatg attggtaact cactcaaata ataaattgct caaaccaacc gtctaaatcg
     6301 tataatgcag ccaaagttct gacagaatct ggcgtattaa tcaaactgtt tggtatgatt
     6361 ttatggtaat gattcagtaa ttcagcaagt aaggtaaaac cggcagaatc aatccgagtg
     6421 atttctttta aatcccaata taggctttgt ttccctgttg gagataaaaa agaagcacgt
     6481 tgcttccata aagggagcaa cgtgttacga gttaattcgc ctgatagttt cacaaaaaga
     6541 ctttcgttat tttgctgaat gtcccattgt aatgtttttt gaggcataac taaactactt
     6601 attttaaagt gataggctgt tttgcagatt gtgccacttg tgcaattaag gcatcaatcc
     6661 ctttttgacg aatcacaccc gcccattcgt tttgcttggt tgcaaccata cttactcctt
     6721 cagcggccat atcgtatgct tgccattcac ctgttttgct gtttttacgc catttaaaat
     6781 ctaatttgat cggctgtgca gcacctttac ctgacacgtt tacacgaatg cttacgatag
     6841 atttaccatc caccgatttc gggctttcaa tttgcacact ttgatcttga tactgggtta
     6901 acacctgagc ataagactgc tcaacaaatt gaccaaaagc attaaagaat gcctcttttt
     6961 gtgcatcagt cgcagccgat aagtttttcc ctaacactaa ttggcctgca tatttcacgt
     7021 gaacgtgtgg cattaaatcg ttacgcacaa tggtacgcaa atattcaggg tttgatttaa
     7081 ttttcgcttg atttgcttta atatcgccaa ataatttatc tgcggtttgt tgcattaata
     7141 cataagggct agtttcagca aatgcggtgg ttgaaaataa tgcagaaact gccactaagc
     7201 ctgttacgat aattttttta atgtttttta acattattga tgctctccaa aactctaaat
     7261 tagaggttgt tgtacttaat tactctgctt ttggttcagc agaatcactt gctttttcat
     7321 cttcagtttt atctgacttt ttatcaccat ataagaactg accgattaaa tcttctaaca
     7381 ccattgcaga attggtatct acaaaagtat caccttcttt catcattgca gtttcacctt
     7441 cgattacgaa gccaacattt aacgcaacgt attgctcgcc taataagcct gaggttttaa
     7501 ttgagagcga gctggtatcg ggaatttgat taaaactttc atttaccgct aatgccactt
     7561 tcggggtgta ggttttgtta tcaagtgaaa tatcagccac tcggccaact accacaccgc
     7621 caactttaat aggcgcacga acctttagtc caccaatatt atcaaaagtt gcatacaggg
     7681 tgtaagtttt ctcatttgag aagccctgca catttgctac tcttaagcct aaaaagacaa
     7741 gagctgcaag cccaagtagt acaaataagc ctacccaaaa ttcatattta attgattgac
     7801 gcattgtctg ttcctttcaa aaaatcaacc gccgaacatt atcgcagtta aaataaaatc
     7861 caatcctaaa atcaccagtg aagcatttac caccgttctt gtggtcgctt ggctgattcc
     7921 ttctgaagtc ggtacgcaat cgtagccgtt aaataaggca atccagacca ccgcaaaggc
     7981 aaaaatcaca cttttaataa agccgttaat taaatcgctg gtatttaccg agttttgcat
     8041 taccgaccaa aaactgccac catcaacgcc tttccaatct accccgacta atgagccgcc
     8101 ccaaattccg atagcggtaa aaatagcagc taacaccggc attgaaatca cgcctgccca
     8161 aaagcgagga gcgatgatac gtctaagcgg atcaaccgcc atcatttcaa gactggaaag
     8221 ttgctctgtg gctttcatca gcccgatttc tgcggtcaat gccgaaccgg ctcgccctgc
     8281 aaataataat gcagtaacta caggaccaag ttctcgtaaa agcgagagtg aaaccaaagt
     8341 tcccaagcta ctttcggcgg caaaatcgac caataccaca tagccttgta agcctaacac
     8401 cattccgata aataagcccg acagcataat aattaagagc gattgcactc ctaacacata
     8461 aagctgttta atcagtaacg gggtatgttt tctaaattca ggtttaccga ttaatgctcc
     8521 ccataacata aaagcggaac gccctaatgt acggataaaa ttaatcacca ccgccccgat
     8581 agagctaata aaattaacca ttaaatagct cctccgtata atcttttgct ggataatgga
     8641 accgcaccgg accatcagct ttaccggcta agaattgtac cacttgcgga tcttcgcttg
     8701 cctgtaaaat ttccggtgta ccttcagcaa tcactcgttt atctgccaca atataagcat
     8761 aatcggcaat acttaatact tctttcacat cgtgagacac cacaatggag gtcaaattca
     8821 atgcctgatt taactcttta atcagctcga caatcacacc catactaatc ggatcttgcc
     8881 cggtaaacgg ctcatcatac ataatcagat ccggatctaa cgcaatcgct cgagcaaggg
     8941 cggcacgtct tgccataccg ccggaaagtt cggacggcat taaatttgcc gcacctcgca
     9001 acccaaccgc ctcgagcttc aataacacca atttgcgaat tagctcttcg ggtaaacggg
     9061 tatgctcccg aatcgggaaa gccacattat cgaaggtaga aatatcggta aataacgccc
     9121 ccgattgaaa caacatcccc attcgttggc gaatttcata caactctttg ttattggctt
     9181 tgcaaatatc tctgccatca aataaaattt cgcccgattc aggtaaaatc tgcccaccga
     9241 ttagcctcaa cagggtggtt ttaccaatcc cagaaggccc cataatggca gtcactttac
     9301 ctttctgcac ttgcagattc aggttatcgt aaatcactcg ctcccctcgc ttgaaggtca
     9361 agttttttac ttcaaccaaa ttttccgttt ttgtcatcaa ataggactca aattaataaa
     9421 agtgatattt atggtctatc aaatttgcca gaatgtcaaa aaacttttaa taatctgaca
     9481 aaaatctgcc tttacaagcg gtcagatttg ctaaattttt tgcaaaccgg ctgaactgaa
     9541 aaagaaaggt cttgtcttag ccaatacgag cgttttcact cgtagattat aaaaacatag
     9601 gatatgagga acattcacaa tatgaacaaa acaatgaaaa aatcattttt aactgcattc
     9661 attttaggct caaccattgc cgcaatgccg gcgtatgcag aagcaacatt acccacagcc
     9721 gtaaatgggc aagctgtgcc aagccttgca ccaatgctgg aaaaagttcg cccggcggtg
     9781 gtgagtattg cagtagaagg taaaaccaaa ggcgatagcc gccgcagtcg tgaaattccg
     9841 gaagaatttg aatttttctt cggtcctcac gccgatttat tcggcaaccg ctcatcagct
     9901 ccacgcaatt tccgtggcgt tggatcaggt gcagtcatca atgccgaaaa aggttatgtg
     9961 attaccaata accacgtgat cgacaatgcc gataaaatta ccgtaaaact tgaagacgga
    10021 cgtgaattta aagctaaatt agttggtgct gatccccttt cagatgtggc gttaattcaa
    10081 gttgaagatc caaaaaactt aactgaaatt aaattcgccg attccgataa attacaagtg
    10141 ggcgatttta cagttgcaat cggtaacccg tttggcttag gacaaactgt tacttcaggc
    10201 atcatctcgg cacttggtcg ttcaaccggt caatccgatg aaggctatga aaactatatt
    10261 caaaccgatg cggcagttaa ccaaggtaac tctggcggcc cgttaattaa cttaaacggc
    10321 gaattaatcg gaattaacac cgctattatt tctccaagtg gtggcaatgc cggtatcgcc
    10381 tttgcgattc caagtaatat ggcaaacagc ttggtgactc aaattattga gtttggtgaa
    10441 gtaaaacgtg gaatgttagg cattaaaggc ggtgaattga atgctgacct tgctaaagag
    10501 ttcaatattt ccacccaaca aggggcattt gtaagcgaag tcttaccgga ttctgctgct
    10561 gctaaagccg gctttaaagc aggtgatgtg attactgaaa tcaacggtca aaaaatccgt
    10621 agtttcagcg aattacgagc aaaagtagct acttcaggtg taggtaaaga gattgaactt
    10681 acttacctgc gtgacggcaa agaagccaaa gcaaaagtga ccttacaatc ggattctgaa
    10741 gccaaagtta ctgcttcaaa cctcattccg gcattaaaag gggcagattt taacaactac
    10801 aatgccaaag gcattaaagg ggttgaaatt tctaacgtag aaaaaggctc gattgctgaa
    10861 atgcgaagcc tcaaaaaagg cgatattatc atcggcgtga accgccactc ggtagaaaac
    10921 attgccgatt tacgcaaaat attagaaacc aagccatctg tggttgcact caatattgtg
    10981 cgtgacggtg caaatttcta tgtgattttg caataaacct tttgatccac tcaaacaaaa
    11041 gccgatgaca aaaatcatcg gcttttgtta ttgctgggaa tttaacatct gtcgtgccat
    11101 ttccatactt tggataatcg ctctgcggtt gatagaatca ttattgctat ctaacacttt
    11161 acgccaatta tcgagagctt gttgaaaatt gttatttaaa aagctgtcgg aggctagcag
    11221 gagtaaactg gcattttcat ttttatccaa ctgtagggct tgctcgataa tggcttgaat
    11281 ttcaacggtc attttctgcc cgttatcgta ataacgagcg gtggcaatcg cccccaaaat
    11341 agccgctcgt tttccgagta gcttctcggc attatcgtag caaaccagtg ccgaatcaaa
    11401 atcattgctt aacgcataag cctgccctag ttcgtaccat aaatcaccgt tattcgggtt
    11461 ttctcgaagc tggttttgca gactcaaaat atagcgttca tttttcgatg tgccgtgtgc
    11521 atcgctcatc tgttgttgaa aatcttgatg ttgttgcaaa cctgattgca ccacttgata
    11581 acgtccggaa agcccatagt aagtcattgc taacaacaaa atcgccacgc aactcaggct
    11641 tgcgatttta gcaagcggtc gattttgagc attattttgc aaaacgctct gttcaaattg
    11701 cgttcgttca aattggtaac gttgctctgc ctcacgctca aactcttgtc tgacgtcatc
    11761 tgcaaaatgt tgggcaaatt taaccgcttg ttggtagttt tcttggctta attgctcacg
    11821 cgttttcatt tttgttgcct ttatttttgc gagttcgcca caaaatagct agaaataaca
    11881 ggctaaacaa gccaaccggc aagccccata atacccatgt ctgtggcgtg aatggtggat
    11941 cgtaattcac aaaactgccg aaacgctcgg tcataatgcg gataatttcc tcattacttt
    12001 tcccttgatt caccatttca tacacttcaa ttcgcatatt gtaagccgcc gtcgcattgg
    12061 attcgaccaa attttggttc tgacattgca aacatcgcaa cgaacgagcc agtgaaatcg
    12121 cccgtacccg atccgcctca ttttgaaatt gaaaggtgtc caccatttca gcttgaaccg
    12181 tgccgacaaa tagcaacaag ccaaatacaa gcggtaatat tttgcggatt ttttgcaaaa
    12241 agccgatgga aattatgcta tttctcattt ctgagagcct ctaatttggg taggaaatcc
    12301 tgtgcaaaat cagggttgta acccttttgt tggtaacgca ctacaccgtg tttatcaatc
    12361 aaataactgg aaggtgcaga agagactttc agggtttgga tcaaaaagcc tttttcgtaa
    12421 tcatcaataa ttaaactaaa cggatttccc cagtttttca atgcgttgag ggcatcattt
    12481 gggcggtcgc tataagttaa gccgacaatc ggcacgcctt tttgttttag ttccaacaaa
    12541 atcgggaact ctttaatgca ccaagtacac cagctcaccc acacattgag aatataaggc
    12601 tctttcggca agctgttgtt atttaaatgc gcgttactat caagtaagtt cttgcctaca
    12661 aactctggaa acggcttgcc ctgccaatct tcagtgggag caagggcatc tttattcatt
    12721 aacggcacag tcaaaaagcc aacaataact acaagtaaca ggagcggaat aagtaacagg
    12781 atttttttca ttttttgttt tctctacgat aaccgaataa tgccaacagg gcggccatta
    12841 ccatcatcat accacctaac cataaggctt gcacataagg cttatagtgc aaacggaagg
    12901 catattctaa attgccgaac ttatccccca tcacaatata aatatcgtct aaattgtggt
    12961 ggaaaagccc tacttctgcc attgtcatcg ttcttacatc ataatagcgt ctttccggtg
    13021 tgacggttgc cagcaactgt tcatctcggc tgatagaaaa aacggcttgc tcggcggtgt
    13081 agttcggacc gatgagatcg tgataatctt catatttaaa ggtataaccg gcaagttccg
    13141 ctgcttgatt cggctttaac cgcacgccga tttcatcgcc gtaataactg ttcatcattg
    13201 ccccaatcac gcaaaccgca aagccgatat gggctaaccg catcgcaagc ggtcgaattt
    13261 gccacatttt ttgcgaatag ggcaaatgag tgagaataat ccagatcgca aggctgataa
    13321 atatggtggg taacggctgc aaagcaaaat gctctctttg cgagatggag gcataaatca
    13381 accctaacgc taaaccgact gcaatcggca gcaaccaaag ttttaccaat atctgcttat
    13441 ttgaaatctg tttccagccc agcaccaccg caaagcccat tactatcatt aacagtaacg
    13501 ctagtggcgt gaatacgcta ttgaaatagg gggcccccac tgaaatcgat ccccaattca
    13561 tcactgtgaa gatcatcggg tagaaagtcc ccagcaatac cacagaagca gccacactaa
    13621 ataagccgtt aatcaataaa aatgccgttt ctttagaaag taagttgaaa cgcactttgc
    13681 cttgccagag attcgctcgg aatgcaaaca gagcaagggc aatgaaactt aagccgaaga
    13741 ataagatcag cagtgccatt cctctgtcgg gatcgaccgc aaaggcatga accgaggtca
    13801 gtacacccga acgaacaata aacgtgccta ataggcttaa agcaaaggcg aaaatggcaa
    13861 gtagaatcgt ccaataatag aaaatgccac gctgttggct cacaattaaa ctatgcacca
    13921 atgcggtgcc aagtagccaa ggcattaggg aggcattttc caccggatcc caaaaccacc
    13981 agccacccca gccgagttcg taatatgccc accacgcccc taaaataatg ccggcggtga
    14041 gaaatcccca cgaaatcatc gtccacggac gaagccaacg cataatcgca gcgtccattc
    14101 cgcctgaaac gagggcggcg acaatcattg caaagctcac cgcaaagccg acatagccca
    14161 agtagagcaa aggcgggtga aagatgagcc caatatcttg caacattggg ttgagatctc
    14221 gcccttcagg tggtggtgga aagccacgtt caaatgggct ggaaaccaat agaatgaaaa
    14281 gtagaaaacc tagtgcaatt agccctaaca tcgctaaggt tcggttggca aacaagcggt
    14341 caattttttg cgaaaatttg caaaataccg cagaccaaat cacaagagcg gtgagccaaa
    14401 acagcattga gccttcgtgt ccgccccaag tggcggcaaa tttaaaaaaa tcggggagct
    14461 ggctgttgga atgagcggca acgtagataa ccgaaaaatc atcggttaga aaagcataag
    14521 ctaaggtaga aaaggaaaat gtggtaaaag cagcttgcaa ataagtgaaa agcggagcca
    14581 atgccagcca atgatattgc ttgcgaactt cgcctagaag tgcaaaacca acttgaaaaa
    14641 tggcactaat tgcagccaat aaaagtgaaa aatagccgag ttccggtagc ataaaaaatc
    14701 caaaaaatga ccgcttgtga atgtaaaaaa agccctctcc acttgtggga gagggacaga
    14761 tttttcttcg ttcagaagaa aaatcaggga gaggggaatt aaataatttt gctaaaaata
    14821 acaatactcc ctctctctga aaaatatttc tgaacgaaat atttttcggt ctcaatactc
    14881 gctacgctcg ctccttcgga gccgttggca aagccaacgt tcaaatgtaa acatttgtcc
    14941 cacaagggga gagagtatat cctaacttgc aaccgttagt tgccctgcat aaaggataaa
    15001 gtaacgcaag cagagtacac cgattaagtc gaaaacggaa attaagataa taaatttcac
    15061 gttatgtttc aagcggtggc taccaaaaat attggcaaca agcggaatcg caataccgat
    15121 taacattacg cctatccaga acacattccc ccagaagccg ttaagtgcat gggttaaagc
    15181 gagcgattta tctgctccac cgaagtgtaa gcccacaaag aacgctacaa ttaagcctaa
    15241 ttcggttacc ataatcggca cttcaaattt gtgcataaag tggacttcgt ggctttcacc
    15301 ggataacttg cctgcgagta aaatcactag gaaagttgct gcaatacctg acgatgcccc
    15361 tgatgccaag aacaatgccg gtaacacagg gttattcagc attggataac tcactaacgc
    15421 cgagagtaag aaaccggtgt aagcaccaag tacagcagcc aatacgaata agataaattc
    15481 aattggtttt aacagcttcg cttcggcaaa atcgatcaaa ccagagacca caggtagata
    15541 ccgaacaatc caatctttaa acattatggc gatccaaacc accaatactg ccatataaag
    15601 ttggaataac attaccccca tcgacattac tgaggtaaag ttatagttga acattaattt
    15661 ccagaatgtc caaggtttgg ttaagtggaa aatcagtaac agtaagccga taatggttgg
    15721 taatgtgcca agaatagccg cactacgaat aatccagttt tggcttggtt tttccatttt
    15781 gacaccgcta ttacggtaag caatcgctaa ctgaaccgca cctgatgaaa taccaagtag
    15841 gaataagtaa atagcgatag tgccatccca aacaaggttt ggggtttgga aaggtacata
    15901 ttcattcatt atctatgttc tcctttacca aatggaatgt gatataaatt cggctccgtg
    15961 cctaatgccg ttttggtgcg ataaaccgga ttatttttca ctttatggaa aatatcgcta
    16021 cttggatcat tcatatcacc aaaggttaaa gctttagtcg gacaagcctc tacacaagca
    16081 ggctgtttgc cttctgcaag attggtatct cggcaaaagt tacatttatc cgccgatttt
    16141 ttctcagggt gaataaaacg tacacgatac gggcaaaccg caatacagta ttggcaaccg
    16201 acacacaaat ctgagtgtac atcaataatc ccggtttcag gatcgataaa tgaagcaccg
    16261 gtcgggcaaa cactcacaca aggtgcattg gtacagtgtt ggcaagattg gcggaaaaac
    16321 tcatattgta cgttcggaaa ctcaccgaaa ggctcactac ggataatttc taaacgagaa
    16381 accccttccg gcactttgtt ggtggtgcga caagcgtcca tacaagccgt acagccgata
    16441 caggcagttt catcatgaac catcgcatag cggattttct tttgttcttt ctcagtagca
    16501 agagttatgg aggtggcaag ccctgtactt gccacaactg cgatagcacc tgcccctgag
    16561 acgaaatctc tacgggtgca agtcattatt ttgttccttt tgcttctgtg gctttcattt
    16621 caggattttt aaattcgcct gaatgaattt tggtatgaca atccgtacaa agtttaatgc
    16681 gatctttttc aggaatgtct ttcatcggat ctttttccgg gtgaatttca tgacagttgg
    16741 tacaagcaat tttagttgcg tgcgtgtcgt gagcccagaa tttttcacgc aatttctctg
    16801 ccgtatggca agcaaaacag acttgatttt gctcatttac cgaacgttca agtgatgggt
    16861 tacttgcttt accgtgtggg ttaaaacgca ttacgtcttt tgcccctttg cggtggcttt
    16921 cagaaatatt accgtggcaa cttatacaag tgagtggctc tccattattc gggcttttca
    16981 catctttttg gaaatgtttg cctgcgtgat ggaaaggctt acctgttgcg tttgccgatt
    17041 cgtgacattg agtacaatat ttatttggat cacggcgtgc atcttgagct acttttgcat
    17101 catcagccgt ttctgattgc caaagaggtt ttggctgctc aggcattaac gcattcgcac
    17161 tggaaattgc aaaaaaacct gcaaatacga ccgcttgtat gagggcgact gctcgtcctg
    17221 cttttgagat taattttttc atagttcacc tcaagctaca ttattttgct tctgcttttg
    17281 gtgctgctac cggtttgtct gcttcttctg cgggtaataa acctttagca cgagcttctt
    17341 tttcccattg aggaaccaca gtttttaaga actcatcttt tgctgcttgc tctttaggaa
    17401 tatctaaacc aatagcaagt tgtgctttct ctttagttga gatgtccgga atcgccactg
    17461 gcgttgttac accgtgtttc gctaacacta cacctaattt agcacgggca tctgctgcac
    17521 ggtcgatacc tgttgcgatg gtacgtaaca ttacatcagg tgcgtggaag tggttaccgt
    17581 gacctgccgc agagtaatcc caacgccatt gagcgtgacg aattgccatt aagatctctt
    17641 tcatctcttc ttgagttgct ccagcttccc aagcagcttt cgcttcaaag tgagctttca
    17701 ctaattgatc ttctaagcga atcattgcct cttttacttc gtgtttatac tcttttacac
    17761 gtttttccaa tgtttctttg ctttgttcat gacaagtttt acaagtcgct tcaaattggt
    17821 caaacggatt accgattttg tggtcagtat aaactttgcc gtctttgtct ttcacttttg
    17881 gcatatggca atcaatacag gttacaccat ttttcccatg tgtaccttgt gaccaaactt
    17941 caaaatctgg gtgctgcgtt tttagcatcg gagctttcga taaagcatga gtccagtctg
    18001 taaaattgat ttcatcgtag tatttttcaa tgctatctac atctacacct ttatcccaag
    18061 ggaaagttac atctgtttta tttttgaaat agtactccac atggcagtta gcgcacacag
    18121 cagggcgttt accatgttta tctaaatcct caaacttcca accaaccgta ttcaatgcac
    18181 gtaatacgtg aggacgtgca acacgtagtg caggtttacc ttgtttaaac tcttctgatg
    18241 tcgtgtcatg gcagtctgca caacctattg agtttacaat ttcagcacca tatttcgccc
    18301 atttaggatc aaaatatcct cgctcacctt tctcctcaat taagcgtgga acatcagggc
    18361 ctttacatgt ccaacaagcc ataggttgtg gaccatcatt ttcatcttta ggcgcgccgg
    18421 tgcgcaaaat atcacgcaca tcggtaactg cataaaagtg acctcgtggt ttattataat
    18481 ctttcgcaaa agcatagcct gcccacaaaa taacataacg agggtcagcc tctaacgcac
    18541 ttcctcgatc tgtggatttt gcagttgact tccaagaatc gtattgtagc ggatattttt
    18601 ctgcaaatag gtggtttgca gactcaattt tcacgcctaa tttttcatgc ttaactgctt
    18661 tatctgttaa tgattcagtt ttcgcctctt cagctaaagc agtttgtaaa caccccaata
    18721 ttgaaattgt tgccacagct aggcttttta ttaaaaattt cattttggct ctcccaatca
    18781 ggtaaaaata attagagaaa aa
//
LOCUS       DANLVT010000041        18296 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.041, whole genome shotgun sequence.
ACCESSION   DANLVT010000041 DANLVT010000000
VERSION     DANLVT010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18296)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18296)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18296
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.041"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(89..1024)
                     /gene="ftsX"
                     /locus_tag="PXC99_001200"
     CDS             complement(89..1024)
                     /gene="ftsX"
                     /locus_tag="PXC99_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsX"
                     /protein_id="HDL5417659.1"
                     /translation="MIRSFSKLGAQTNYSLRAVWQDLMQRKLGTFLTVLVIAVSLTIP
                     TVSYLLWKNTHEAATQFYPEPQLTVYLHKNLAEHDVNTVVDRIRAFETDKIESFNYIS
                     RQQSLDEFRSWSGFGEALDILDENPLPAVVTLKPKANFNNADTMVELRNGLQQIKGVQ
                     EVRLDNGWLEKLTALTWLIARIAVVCTLLMLLAVFLVIGNSVRTDVANSKAAIEVQQI
                     LGATDHFIARPFLYTGMIYGLFGSLLAVLFSAVTISYFTGVVKYVTDMFTVQFELNGL
                     DFSEAFFLVVLCVFIGWLSAKIATMRNIFRIGSRG"
     gene            complement(1034..1687)
                     /gene="ftsE"
                     /locus_tag="PXC99_001201"
     CDS             complement(1034..1687)
                     /gene="ftsE"
                     /locus_tag="PXC99_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HDL5417660.1"
                     /translation="MIKFTNVNKVYKGGKPALQGIDFHLPAGGMAYITGHSGAGKSTL
                     LKLIMGIERANGGQILFNGHDITRLAHHELPFLRRQIGMVHQDYRLLTDRTILDNVAL
                     PLIILGMNQAIVEREARIALERVGLADKANYLPLHLSGGEQQRVDIARAIVHRPTLLL
                     ADEPTGNLDEKLSFEIFRLFEEFNQAGTTVLIATHDTNIISKRPKPCLVLEQGHLKF"
     gene            complement(1680..3176)
                     /gene="ftsY"
                     /locus_tag="PXC99_001202"
     CDS             complement(1680..3176)
                     /gene="ftsY"
                     /locus_tag="PXC99_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HDL5417661.1"
                     /translation="MSEKKKGFWSWLGFGKKEEAEQKEIQQEQESIQPEQPVIVEPET
                     EKSFSEKLDELEDKIEEKVDQLEDYFEEKEEKIEQFAEQVEDTIEQKVEDFKEFVEEK
                     VEEAKAFFDDVEDKIEQTFEEQKGEQAVENLQNIATEQLDLNEQEQVTYQVEEAVAEE
                     VAETELVNNVQDTVEESTIQDEYQEKPSQGGFFSRLIQGLIKTKQNIGSGFRNFFRGK
                     KIDDELFEELEEQLLVADLGMPTTQKIINNLTQHATKQQLKDADLLYQQLKVELGEVL
                     KPVAQPLVLEAKKPYVILMVGVNGVGKTTTIGKLARKFQQEGKSVMLAAGDTFRAAAV
                     EQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAAKGIDVLIADTAGRLQNKNNLMD
                     ELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKLFNEAVGLTGITLTKLDGTAK
                     GGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEFIEALFSHEDEQND"
     gene            3255..3845
                     /gene="rsmD"
                     /locus_tag="PXC99_001203"
     CDS             3255..3845
                     /gene="rsmD"
                     /locus_tag="PXC99_001203"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HDL5417662.1"
                     /translation="MKKNRNSPQSVQQMGEVRVIAGLWRGRKLPVLNAEGLRPTTDRV
                     KETLFNWLMHDIAHSRCLDCFAGSGSLGIEALSRQAQAVVFLEKFANAANQLKKNLQA
                     LKSEQGSVIHTDTLAYLAQKNNGEPFNIVFIDPPFHQGFVPQVLNLLAENNWLAPNAI
                     LYVETEKNHPPLELPQGWQILKEKAAGMVVSRLIQL"
     gene            3929..4243
                     /locus_tag="PXC99_001204"
     CDS             3929..4243
                     /locus_tag="PXC99_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciU family protein"
                     /protein_id="HDL5417663.1"
                     /translation="MKKLTPDEAIDIAYDIFLEMAGENLDPADILLFNLQFEERGAVE
                     MVETSEDWDQEIGTLIDPDAFAEVWVGLVNEQDEMDDVFARFLISHDEENREYHVVWK
                     EK"
     gene            4256..4768
                     /gene="hpaC"
                     /locus_tag="PXC99_001205"
     CDS             4256..4768
                     /gene="hpaC"
                     /locus_tag="PXC99_001205"
                     /EC_number="1.14.14.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase,
                     reductase component"
                     /protein_id="HDL5417664.1"
                     /translation="MANIDTNQPIEASLKFREAMAHLSSAVSIVTTNGVAGKAGLTVS
                     SVCSVTDSPPTLLFCINKNSHVHDIIQQNGKVCVNVLSHEQEDLAKHFAAILESTMEE
                     RFGWDIWNNGFDDQPVLRSAISALQGNIVDTHAVGTHTIFVVEVSHIDVEPNHSLVYF
                     ARQFRSVNID"
     gene            4886..5758
                     /gene="tehB"
                     /locus_tag="PXC99_001206"
     CDS             4886..5758
                     /gene="tehB"
                     /locus_tag="PXC99_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase TehB"
                     /protein_id="HDL5417665.1"
                     /translation="MENLICYKQMPVWTKATLPQMFQEKHNTKVGTWAKLTILKGSLK
                     YYELTEEGEIIKEDIFDANHQRPMVEPQLWHKVEALSDDLECQLAFYCKPEDYFAKKY
                     NLTATHSEVLNAVNYTKGGKALDLGCGRGRNALYLNLLGFDVTAVDHNQESIDFLNYM
                     IEKEQAQNITTAVYDINEATIGSQNGEYDLIISTVVMMFLNRERIPAIIENMQKNTKV
                     GGYNLIVCAMSTDDYPCPMPFSFTFKEGELADYYQGWELVKYNEDLGHLHKTDENGNR
                     IQLRFATMLAKKIS"
     gene            5896..6933
                     /gene="purM"
                     /locus_tag="PXC99_001207"
     CDS             5896..6933
                     /gene="purM"
                     /locus_tag="PXC99_001207"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011962107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HDL5417666.1"
                     /translation="MSNTQLSYKDAGVDIHAGNELVERIKPDVKRTRRPEVMGGLGGF
                     GALCALPTKYKEPILVSGTDGVGTKLRLAIDLNKHDTIGQDLVAMCVNDLVVQGAEPL
                     FFLDYYATGKLEVDVATNVVKGIADGCVISGCALVGGETAEMPGMYHEGDYDLAGFCV
                     GVVEKSKIIDGSTVKTGDALIALASSGPHSNGYSLIRKVLEVSRSNPATDLLEDKPLS
                     EHLLAPTKIYVKSILKLVEEVDVHAIAHLTGGGFWENIPRVLPESAKAVIDESSWQWP
                     AIFSWLQEKGNISRYEMYRTFNCGVGMVIALPERDVEKALTLLKESGENAWLIGKIED
                     LGTGSEQVEIR"
     gene            7011..7289
                     /locus_tag="PXC99_001208"
     CDS             7011..7289
                     /locus_tag="PXC99_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HDL5417667.1"
                     /translation="MQLFWPIYFVLMNLAALYLMYSDKQKAIKKEWRVPEITLLSFCL
                     LGGAIGVYLGMKYFRHKTQHWYFHVAVVLSTFAWLIGLPYFYLALSSY"
     gene            7432..8859
                     /gene="aspA"
                     /locus_tag="PXC99_001209"
     CDS             7432..8859
                     /gene="aspA"
                     /locus_tag="PXC99_001209"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HDL5417668.1"
                     /translation="MSDVRIEHDLLGEREVPNSAYWGIHTLRAIENFNISNVTISDVP
                     EFVRGMVMVKKATALANGELGAIPKKIAKAIVAACDEVLVKGRCLDQFPSDVYQGGAG
                     TSVNMNTNEVIANLALEILGEAKGKYDIVNPMDHVNASQSTNDAYPTGFRIAVYNSIT
                     KLINKITYLQTAFENKATEFSDVLKMGRTQLQDAVPMTLGQEFKAFAVLLDEEVRNLK
                     RTAELLLEVNLGATAIGTGLNTPEGYSTLAVKYLAEVTQLPCSLSENLIEATSDCGAY
                     VMVHGALKRTAVKLSKVCNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEV
                     VNQVCFKVIGNDTTVTFAAEAGQLQLNVMEPVIGQAMFESIELLSNACINLRDKCIDG
                     ITANRDICQNYVFSSIGIVTYLNPFIGHHNGDIVGKICATTGKSVREVVLERGLLTEE
                     QLDDILSIENLMNPTYKAKRFTEEE"
     gene            complement(8934..10952)
                     /gene="rep"
                     /locus_tag="PXC99_001210"
     CDS             complement(8934..10952)
                     /gene="rep"
                     /locus_tag="PXC99_001210"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase Rep"
                     /protein_id="HDL5417669.1"
                     /translation="MKLNSQQQQAVEYTKGACLVLAGAGSGKTRVIINKIAHLIAHCG
                     YSPKQIAAVTFTNKAAREMRERVDHSIGKENSKGLTISTFHTLGFEILKREYKLLGFK
                     SGMTLFDEQDQIALLKHLLPENVTEDKDLLKALIATISNWKNDLLSPERVLTRVRDER
                     ERVFSHFYQLYQNQLKAYNALDFDDLIMLPVLLFRQFPEAKSRWQQKIRYLLVDEYQD
                     TNTSQYELIKLIVGNEPNFTVVGDDDQSIYSWRGAKPENMQRLREDFDLQVIKLEQNY
                     RSSQRILHCANILIDNNDHLFSKRLFSELGQGEKLQVIEAKNEEHEAERIVGELIAHR
                     FSKKTKYKDYAILYRGNHQSRLLEKLLMQNRIPYKISGGTSFFARAEIKDMMAYLRLV
                     VNQDDDAAFLRIVNTPKREIGAATLEKLGILANEKQVSLFEAIFDFELIQRLTPKPYQ
                     ALQDFARWIVEIADQADRSDPIEAVKDLLAKIQYEAYLYEMAANPKVAEMQSRNVQTL
                     FEWVQAMLEGDEIEPPMNLVQVVNRLTLRDMLERGEEDDEADQVQLMTLHASKGLEFP
                     HVFLIGMEEGILPHQTSLDEDNVEEERRLAYVGITRAQQTLTFSLCKERRQYGEIIKP
                     EPSRFLLELPQDDLEWESEKPRMTEQEKEAKSSANIANLMAMLKANKK"
     gene            11200..12315
                     /gene="potA"
                     /locus_tag="PXC99_001211"
     CDS             11200..12315
                     /gene="potA"
                     /locus_tag="PXC99_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     ATP-binding protein PotA"
                     /protein_id="HDL5417670.1"
                     /translation="MEKVEQKAIIELKNVTKSYGSKTILKNLNLTINDGEFLTILGPS
                     GCGKTTALRLIAGFEDLTEGSIILDGQDVSNVPAEQRPVNTVFQSYALFPHMTIFENV
                     AFGLRMQKVPNAEIEPRVMEALRMVRLEDRAQQKPAQLSGGQQQRIAIARAVVNKPKV
                     LLLDESLSALDYKLRKEMQNELKALQRQLGITFIFVTHDQEEALTMSDRIIVMNAGKI
                     AQDGTPREIYEEPSNLFVARFIGEINVFDATVIERVDATNVKANVEGRICNIKVEDLE
                     VQPNQKLKVLLRPEDIVIEELDENESSKAIIGHIIDRNYKGMTLESSVRLDHNGMNVL
                     VSEFFNEDDPNIDHEVGQKVALTWYEGWEVVLNDEGE"
     gene            12302..13165
                     /gene="potB"
                     /locus_tag="PXC99_001212"
     CDS             12302..13165
                     /gene="potB"
                     /locus_tag="PXC99_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005698572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotB"
                     /protein_id="HDL5417671.1"
                     /translation="MKANNKFQNGAVATIFGWLLLFVLVPNVLVLIISFLTENRQSQY
                     FVDFAFSFDAYKSLFNDTYAAVLWNSLYMAGIATFFCLIIGYPFAFFIAKMPERIRPF
                     LLFLVVLPFWTNSLIRIYGIKIFLGVKGFLNESLMALGIISEPMRLLNSEIAIIIGLV
                     YILLPFMILPLYSSIEKIDNRLLEAAKDLGANAFQRFIKVTIPLTMPGIVAGCLLVLL
                     PAMGMFYVADLLGGGKTPLVGNIIKSLFLNTNQFALGSAVSIALTILMALMLYVYYRA
                     NKLLNKKVELE"
     gene            13165..13932
                     /gene="potC"
                     /locus_tag="PXC99_001213"
     CDS             13165..13932
                     /gene="potC"
                     /locus_tag="PXC99_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotC"
                     /protein_id="HDL5417672.1"
                     /translation="MKKMFRNLFMLVVFAYLYIPIIILVINSFNEDRFGLNWKGFTWN
                     WYERLFSNDTLVQATLNSLTIAFFAATFSTILGALTSIALYRYRFRGKKLVGGMLFVV
                     MMSPDIVMAVSMLVLFMILGIKLGFISLLIAHITFCLPYVVIAISSRLSDFDGKMLEA
                     AKDLGASEVTILRKIILPLALPSIISGWLLSFTISLDDVIVSSFVTSPSYEVLPLKIF
                     SLVKTGVTPEVNALATIMIIFSLTLVVLSQLVVKKKV"
     gene            14133..15056
                     /gene="oppB"
                     /locus_tag="PXC99_001214"
     CDS             14133..15056
                     /gene="oppB"
                     /locus_tag="PXC99_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppB"
                     /protein_id="HDL5417673.1"
                     /translation="MLKFIFKRLLEAIPTLLILITFSFFLMRLAPGSPFTSEKAYPPK
                     VMANIEAKYHLNEPLYKQYFLYMENLSKGDFGPSFKYKDQSVNNLIASAFPVSIKLGI
                     TAFIFAVLIGLTAGTIAALKQNSKWDYLVMGFSMTGIIMPSFVFAPLLVLMFAIYLKW
                     LPAGGWNGGQLYYMVLPVLSLTISYVAGIARITRGSMIEVLHSNFIRTAKAKGLPMRK
                     IIFKHALRPALLPVITYLGPAFVGIITGSMVIESVFGLPGIGQLFVNGALNRDYSLVL
                     SLTILVGTLTILFNAIVDILYAVIDPKIRYS"
     gene            15071..15970
                     /gene="oppC"
                     /locus_tag="PXC99_001215"
     CDS             15071..15970
                     /gene="oppC"
                     /locus_tag="PXC99_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppC"
                     /protein_id="HDL5417674.1"
                     /translation="MQNSSKNQPLVEVTSTIQGRSLWQDARRRFFRNKAAVASLIILC
                     CIILFITFAPMLMPFSYEDTDWNMMGIAPDFESQHYFGTDSSGRDLLVRVAIGGRISL
                     MVGIAGALIAVLIGTIYGAISGYFGGKVDMVMMRFLEILSSFPFMFFVILLVTFFGQN
                     IFLIFIAIGMVAWLNLARIVRGQTLSLKNKEFVEAAIVCGVSRRQIIWRHIVPNVLGL
                     VVVYASLEVPSLILFESFLSFLGLGTQEPMSSWGALLSDGAAQMETSPWLLAFPAFFL
                     CLTLFCFNFIGDGLRDALDPKDK"
     gene            15980..17575
                     /locus_tag="PXC99_001216"
     CDS             15980..17575
                     /locus_tag="PXC99_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5417675.1"
                     /translation="MELLAVNNLDVYLKTDEELVHAVRNVSFSIEKGQTLAIVGESGS
                     GKSVTSMAIMQLLPKNIVSFGERSSIIFEEQNLLTLSEKAMQTVRGDRIGMIFQEPMT
                     SLNPYMPIGKQVAETVQTHNPQISNAEAEKMVLETLQKVKIPDAEKKMICYPHEFSGG
                     QLQRIMIAMAIINKPDLLIADEPTTALDVTTQAEILDLMHDLQRDMGMAIILISHDLR
                     LVHKYSDLVCVMQNGEIIERGETETVFTNPQHPYTVELLTPIPTNLKGELPPNAPTLL
                     QGEHIKVDYILKRSLFGKPKKVFNALKDISLHLKTGETLGIVGESGSGKSTLGRAIMQ
                     ILDYRGNITFAGKTLANLNKAERQALKKDMQMVFQDPFNSLSPRLTVGEIIAEGLTVH
                     CPQMSKTERREKVMKMLEEVNLNPAMINRYPHEFSGGQRQRIAIARAIILEPKFVLLD
                     EPTSALDRSTQITVIELLNRLQKKYGLSYIFISHDLAVIKALSDRVIVMSQGEIVESG
                     DVTQIFENPQQEYTKRLILASNL"
     gene            17755..18150
                     /locus_tag="PXC99_001217"
     CDS             17755..18150
                     /locus_tag="PXC99_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5417676.1"
                     /translation="MKKLMIFATTAMIVSNLAHAAGEQSDAREAHESTVKTSTVKYSC
                     QNGKKLSVKYGFNKQGIPTYAEAKLSGKKRFMPINLYTTDATGTNFGDENNFSLYGDP
                     MEFTNHRKASVNIQSPASEILYKGCTPQK"
BASE COUNT         5353 a         3775 c         3628 g         5540 t
ORIGIN      
        1 agcaataata tattgcttat agtaaaaaac caagttccta ggaactggtt tttatctgca
       61 attatttctc taaaaacaac cgcttgtatt agcctctact accaatacgg aaaatatttc
      121 gcattgtcgc aatttttgcc gacagccagc caataaacac acaaagcacc actaagaaga
      181 aggcttcgct gaaatctaat ccgttcagtt caaattgtac ggtaaacata tcagtcacat
      241 acttcactac accggtgaaa tagctaatcg ttaccgcact aaacagcacc gctaacaggc
      301 tgccaaacaa gccgtaaatc atacctgtgt ataaaaacgg acgggcaata aagtgatcag
      361 ttgcccctaa aatttgttgg acttcaatcg ctgctttgct attggcaaca tcggttcgca
      421 cactgtttcc aatcactaaa aaaactgcca acagcattaa taaggtacac accaccgcaa
      481 tacgagcaat cagccaagtt agagcagtta atttttccag ccagccgtta tctaaacgaa
      541 cctcctgcac ccctttaatt tgttgcaaac cgttgcgtag ctccaccatc gtatcagcat
      601 tattaaaatt tgctttcggt tttaaggtaa cgaccgcagg caacgggttt tcatctaaaa
      661 tatctaacgc ttcaccaaag cctgaccaag aacgaaattc gtctaaactt tgttggcgag
      721 aaatatagtt aaatgactca attttatccg tctcaaaagc acgaatgcga tcaacaacgg
      781 tattcacatc gtgttctgcc aaatttttgt gcagataaac ggttaattgt ggctcagggt
      841 aaaattgtgt tgctgcctcg tgggtattct tccaaagtaa ataactcacg gttggaatcg
      901 taagtgagac cgcaatcacc agcaccgtca gaaaagtgcc gagcttgcgt tgcattaaat
      961 cttgccaaac cgctcttaaa gagtagttgg tttgagcacc taatttacta aatgaacgaa
     1021 tcataatatt tccttaaaat ttaagatgcc cttgctccag cactaaacac ggctttggac
     1081 gctttgaaat aatattggta tcgtgggtgg caatcagcac cgttgtgccg gcttgattaa
     1141 attcctcaaa caaacggaaa atttcaaacg agagcttttc atctaagttt ccggttggct
     1201 catcggctaa taacagcgtt gggcgatgaa caatggccct ggcaatatcg acacgttgtt
     1261 gctcaccgcc ggaaaggtgc aacggcagat agttcgcttt atctgccaag ccaacacgct
     1321 caagggcaat gcgggcttca cgctccacaa tcgcttggtt cattcccaaa ataatcaatg
     1381 gtaatgcgac attatccaaa atggttcggt cggttaataa gcgataatct tgatgcacca
     1441 tcccgatttg gcggcgtaaa aacggcaatt catgatgagc aagtcgggta atatcgtgtc
     1501 cgttaaacaa aatttgcccg ccattggcac gctcaatccc cataattaat tttaatagcg
     1561 tgcttttccc cgcaccggaa tgcccggtaa tatatgccat tccaccggca ggtaggtgga
     1621 aatcaatgcc ctgtaaggct ggctttccgc ccttataaac cttgttcaca ttagtgaatt
     1681 taatcattct gttcgtcctc gtggctaaat aaggcttcaa taaattcttc tgcattaaac
     1741 gggcgtagat cttcaatttt ctcgcccacc ccaataaagc ggatcggaat attgaattga
     1801 tcggcaatcg caaaaatcac gccacctttt gccgtaccgt ctaatttagt taaggtgata
     1861 ccggttaaac ccactgcctc attaaacaat ttcgcttggc tgatcgcatt ttgcccagtg
     1921 ccggcatcaa gcgtaagcat aatttcgtgc ggtgcggttt catcatattt tttcatcacc
     1981 cgcacaattt tcttcaactc gtccatcagg ttatttttgt tttgcaaacg ccctgcagta
     2041 tcagcgatta gcacgtcaat cccttttgcc gcagcggatt gcatcgcatc aaaaatcacc
     2101 gaggcagaat ccgaaccggt gctttgtgcc accaccggaa tgttatttcg ctctccccaa
     2161 acctgtagct gttcaactgc cgccgctcgg aacgtgtctc ctgctgctaa cattaccgat
     2221 ttgccttctt gttggaattt acgggcaagt ttgccaatgg tagtggtttt ccccacgcca
     2281 ttcacaccaa ccattaaaat gacatacggt tttttcgctt ccaacactaa cggttgagcc
     2341 accggtttta gcacttcacc cagttccact ttcaactgtt gatacaacaa atctgcatct
     2401 tttaattgtt gcttggtagc atgttgcgtt aaattgttga tgattttttg tgtggtcggc
     2461 atacctaaat ccgccacaag caactgctct tccagctctt caaataactc atcatcaatt
     2521 ttcttgccac ggaagaaatt acggaagccc gaaccaatat tctgcttggt tttaatcaag
     2581 ccttgaatta aacgactgaa gaaaccgcct tgactcggtt tttcttgata ttcatcttgg
     2641 atagtagatt cttcaactgt gtcttgaaca ttatttacta attcagtttc agcaacttct
     2701 tcagccacag cctcttcgac ttgataagta acttgctctt gttcgttgag atctaactgc
     2761 tcagttgcaa tattttgaag attttcgacc gcttgttcgc ctttttgttc ttcaaatgtt
     2821 tgttcgattt tatcttcaac atcatcaaag aacgctttcg cctcttcaac tttttcttca
     2881 acaaactctt tgaaatcttc gactttttgt tcaatggtat cttctacttg ctcagcaaat
     2941 tgctcaattt tttcttcttt ttcctcaaaa tagtcttcta actgatctac cttttcttca
     3001 attttatctt ccagctcatc taatttttca gaaaacgact tctcagtttc cggttcaaca
     3061 ataacaggct gttccggttg aatactctct tgttcttgtt gaatctcttt ctgttcagct
     3121 tcttctttct taccaaatcc aagccaagac caaaaccctt ttttcttctc tgacatattt
     3181 ttctctcatt tctcgtaaaa atagactaaa cttacatagt ctatcaaaaa atcccttatt
     3241 ttcctttagt gagtatgaaa aaaaatcgaa attcccccca atctgttcag caaatgggcg
     3301 aagtacgggt tatcgccgga ctgtggcgag gcagaaaatt acctgtacta aatgccgagg
     3361 ggcttcgccc gacaaccgat agagtaaaag aaacgctgtt taactggtta atgcacgaca
     3421 ttgctcactc acgctgtctt gattgctttg caggcagtgg ctctctgggc attgaagccc
     3481 tttcccgcca agcacaagcg gtcgtttttt tggaaaaatt tgcaaatgct gccaaccagt
     3541 taaagaaaaa tctccaagca ttaaaatccg aacaaggtag cgttattcac actgacaccc
     3601 tcgcctattt agcacaaaaa aataacggtg agccatttaa catcgtattt atcgatccgc
     3661 cttttcatca agggtttgta cctcaagtgc taaacttgct ggcagaaaat aactggctcg
     3721 ccccgaatgc gattttgtat gtggaaaccg agaaaaatca cccgccatta gagctaccgc
     3781 aaggctggca aattttaaag gaaaaagcag ccggaatggt ggtaagccgt ctgattcagc
     3841 tataatcttt ttgtttttta taactaaaaa atataaaata aaacttatct atctaacatt
     3901 ttattaacac tcaaattaga ataacgaaat gaaaaaatta acccctgatg aagccattga
     3961 tattgcctac gatattttct tagaaatggc aggcgaaaat ttagatcctg ccgatatttt
     4021 actgttcaac ctccaatttg aagagcgtgg tgcagtggaa atggtcgaaa cttctgaaga
     4081 ctgggatcaa gaaatcggga ctttaattga ccctgatgcc tttgccgaag tttgggttgg
     4141 cttagtcaat gaacaagatg aaatggacga tgtattcgcc cgtttcttaa tttcccacga
     4201 tgaagaaaac cgtgaatatc acgttgtttg gaaagaaaaa taaaaaggag aaaaaatggc
     4261 taatatcgac actaatcaac caatagaagc ctcgcttaaa tttcgtgaag caatggctca
     4321 cttatcttct gcggtgagca ttgtgacaac caatggcgta gccggcaaag cagggctgac
     4381 ggtttcgtct gtttgttccg ttaccgattc cccaccaacg ctcttatttt gcattaataa
     4441 aaacagccac gttcacgata ttatccaaca aaacggcaaa gtatgcgtta atgtgttaag
     4501 ccacgaacaa gaagacttag caaaacattt tgccgccatt ttagaaagta caatggaaga
     4561 acgctttggt tgggatattt ggaacaacgg ctttgacgat cagcctgtgt tacgcagtgc
     4621 tatttctgct ttacaaggca atattgttga tacgcacgca gtgggtacgc atactatttt
     4681 tgtggtagaa gtgagccata ttgacgtaga gccgaaccac agtttagttt attttgcccg
     4741 ccaatttaga agcgtgaaca ttgactaaaa tatatttaac agaaatttga tcaaatccga
     4801 cttttttagt cggatttttt atttcctgtt tttaaaacag tgctaaaatt ttgccgttta
     4861 tgtttgactg acaaaaggaa acaaaatgga aaatttaatt tgctacaaac aaatgccggt
     4921 gtggacaaaa gcaaccttac cacaaatgtt ccaagaaaag cacaacacca aagtcggaac
     4981 ttgggcaaaa ctcaccattc tcaaaggttc tctcaaatat tatgaattaa ccgaagaggg
     5041 agaaattatc aaggaagata tttttgatgc aaaccaccaa cgcccaatgg ttgagcctca
     5101 actttggcat aaggttgaag ctctttctga cgatttagaa tgccagttgg ctttctattg
     5161 caagccggaa gattattttg ctaaaaaata taatctgacc gctacccatt cagaagtgct
     5221 aaatgccgtc aattatacca aaggtggcaa agcgttagat ttaggttgcg ggcgaggacg
     5281 caatgcactt tatctgaatt tactgggttt tgatgtcact gctgttgatc ataatcaaga
     5341 aagcattgat tttctcaact atatgatcga aaaagaacaa gctcaaaaca ttactaccgc
     5401 tgtttatgat attaacgagg caactatcgg ctcgcaaaac ggtgaatatg acctgattat
     5461 ttccactgtt gtaatgatgt tcttaaaccg tgaacgcatt cctgccatta ttgagaatat
     5521 gcagaaaaac actaaagtcg gcggttataa cttaatcgta tgtgcaatga gtaccgatga
     5581 ctacccttgc ccgatgccgt tctcctttac cttcaaagaa ggcgagctcg ccgattatta
     5641 tcaaggttgg gaattagtca aatataacga agatttagga catttacaca aaactgatga
     5701 aaacggcaac cgcattcaac tacgttttgc gacaatgttg gcgaaaaaaa tcagctaaac
     5761 ttaaccgctt gcagggggaa ttagcttccc cctaattcat caaatccatt ctatttattt
     5821 tcactttttc attccgcaaa cgtttgcttg tgctataatg gcttcgtttt ttagtcattt
     5881 actgttgagg ttaaagtgag caacacacaa ctaagttaca aagatgccgg cgttgatatt
     5941 cacgcaggaa acgagttagt cgaacgaatc aagcctgatg ttaaacgcac ccgtcgccct
     6001 gaagtaatgg gcggattagg tggttttggt gctttatgtg ctttaccgac aaaatataaa
     6061 gagccgattt tagtttccgg taccgatggc gtcggcacaa aattacgctt agccattgac
     6121 ttaaacaaac acgatactat cgggcaagat ttggtagcga tgtgtgtgaa tgaccttgtc
     6181 gtgcaaggtg ctgaaccgct tttcttctta gattattacg ccaccggtaa attagaggtt
     6241 gatgtagcca ccaatgtcgt caaaggcatt gcagacggtt gcgtgatttc aggttgtgct
     6301 ttagtgggag gtgaaacggc tgaaatgccg ggaatgtacc acgaaggcga ttacgattta
     6361 gccggattct gtgtcggtgt ggtagaaaaa tctaaaatca ttgacggttc aacggtgaaa
     6421 accggtgatg ccttaattgc attagcgtcc agtggcccgc attccaacgg ctattcgtta
     6481 attcgtaaag tattggaagt cagccgatcc aatcctgcaa ccgatttatt ggaagacaaa
     6541 cccttaagcg aacacttatt agccccaact aaaatttatg taaaatcaat cctaaaatta
     6601 gttgaagaag ttgatgttca cgctatcgct cacttaaccg gtggcggttt ctgggaaaat
     6661 attccacgcg tattgccgga atctgccaaa gcggtgattg atgaatcgag ctggcaatgg
     6721 ccggcgatat ttagctggtt acaggaaaaa ggcaatatca gccgttatga aatgtaccgt
     6781 actttcaact gcggtgtcgg aatggtgata gccttacctg agagagatgt cgaaaaagcc
     6841 cttactcttc ttaaagagag tggtgaaaat gcgtggctta tcggtaaaat tgaagactta
     6901 ggcaccggta gcgagcaagt tgaaatccgc taatttgcaa aataaatgct aaaattgacc
     6961 gcttgtagta actgatctgc aaacggttaa atttttattg aggaatgcaa atgcaactat
     7021 tttggcctat ctactttgtc ttaatgaacc tagctgcctt atatttaatg tatagtgaca
     7081 aacaaaaagc gatcaaaaaa gaatggcgag tgccagaaat tactctcctc tctttttgcc
     7141 tcttaggtgg ggctatcggt gtttacctag gtatgaaata ctttcgccat aaaacccaac
     7201 attggtattt ccacgtcgct gttgtgcttt ctacttttgc ttggctgatt ggcttgcctt
     7261 acttttattt agctttatca tcatattaat ttatcattac tttttttaat ccgaaagccc
     7321 aatttatatc ctagtccgct cacaaaaaat ttgatttaga tcgcattatt tgtctattaa
     7381 aatcgttatt atctaccaaa atcgattgtc atttatttta aggagatgaa tatgtcagat
     7441 gtgcgtattg aacacgattt acttggtgaa agagaagtac ctaatagtgc ttattggggc
     7501 attcatacat taagagcgat tgagaatttt aatatctcaa atgtcaccat ttctgatgta
     7561 cctgaatttg tgcgtggcat ggtaatggta aaaaaagcta ctgcgttggc aaatggtgaa
     7621 ttgggtgcaa tcccgaaaaa aattgccaaa gctattgtgg cagcctgtga tgaagtatta
     7681 gtgaaaggac gctgtctcga tcaattccct tcagatgttt atcaaggtgg agccggcaca
     7741 tcggtgaata tgaataccaa tgaagtgatt gccaaccttg cattagaaat tttgggcgag
     7801 gcaaaaggta aatatgatat tgtcaatcca atggatcacg ttaatgcaag ccaatccacc
     7861 aatgatgcct atccaaccgg tttccgcatc gcggtttata acagtatcac taaattaatc
     7921 aataaaatca cttacctaca aactgcattt gaaaataaag ccactgagtt ttccgatgta
     7981 ctaaaaatgg gaagaacgca gttacaagat gccgtgccaa tgacgctcgg tcaggaattt
     8041 aaagcttttg ccgtattatt agatgaagag gttcgtaacc ttaaacggac ggcagaattg
     8101 cttcttgaag tgaatttagg cgcaaccgct atcggtactg gtctgaatac gccagagggt
     8161 tactctactc ttgcagttaa atatttagcc gaagtcacgc aactgccttg ctcactgtct
     8221 gaaaatctca ttgaggcaac atctgactgt ggtgcttatg taatggttca cggtgcatta
     8281 aaacgcaccg ccgtcaaact ttctaaagtg tgtaatgact tacgattact ttcatcaggc
     8341 ccacgtgccg gcttaaatga aattaatctt ccggaattac aagccggctc atctattatg
     8401 ccggcaaaag taaaccctgt tgtacctgaa gtcgtaaacc aagtgtgctt taaagtgatt
     8461 ggtaacgaca ccaccgttac ttttgcagca gaggccggtc aattacagct taacgtaatg
     8521 gagccggtta tcgggcaagc aatgtttgaa tctatcgagc tgctttccaa tgcatgtatt
     8581 aatctacgtg ataaatgtat tgacggtatt accgctaacc gtgacatctg ccaaaactat
     8641 gtgttcagct ctattggtat tgtgacctac ctcaatccat ttatcggcca ccataatggt
     8701 gatattgtcg gcaaaatttg tgcaaccacc ggcaaaagtg tacgagaagt tgtgcttgag
     8761 cgaggcttac tcaccgaaga acaactcgat gatattctct cgattgagaa cttaatgaat
     8821 ccgacttata aagccaaacg ctttaccgaa gaggaataat cattgtttac aagcggtctg
     8881 attctggcaa aaaattgcaa atttttacca aaatcagacc gcttgttatc ccattatttc
     8941 ttatttgctt tcagcatcgc cattaaattt gcaatatttg cagaagattt tgcctctttt
     9001 tcctgttcgg tcattcttgg cttttcactt tcccactcca aatcatcttg tggcaattcc
     9061 agtaaaaacc ggctcggctc aggtttgatg atttcgccat attggcgacg ttctttacac
     9121 agtgaaaacg tgagcgtttg ttgggctcgg gtaatgccga cataagccaa acgccgctct
     9181 tcttctacat tgtcctcatc aaggctggtt tggtgtggca gaatcccctc ttccataccg
     9241 attaagaaaa cgtgcggaaa ttccaaccct ttcgaggcgt gaagagtcat tagttgaact
     9301 tgatcggctt catcgtcctc ttcgccacgt tcgagcatat ctcgcaaggt taaacggttt
     9361 accacttgca ccaaattcat cggaggctct atttcatcgc cctctaacat cgcttgcacc
     9421 cattcaaaca aggtctgcac attacggctt tgcatttccg ctacttttgg gttcgccgcc
     9481 atttcataca aataggcttc atactgaatt ttcgccaaca gatcttttac tgcttcaatc
     9541 ggatcggatc tatcggcttg atcggcaatt tccacaatcc agcgggcaaa atcctgtaag
     9601 gcttggtaag gctttggcgt gaggcgttgt atgagttcaa aatcaaaaat cgcctcaaac
     9661 aaactgacct gcttttcatt agcaagtatg cctaattttt ctagcgttgc cgccccaatt
     9721 tcccgtttcg gcgtattcac aatacgcaag aaagctgcat catcgtcttg attcactacc
     9781 aaccgcagat acgccatcat atctttgatt tccgctcgag caaaaaatga cgtaccaccc
     9841 gaaattttat acggaatgcg gttttgcatt agcaattttt ccaacaagcg ggattgatgg
     9901 ttgcctcgat acaaaattgc ataatctttg tatttggtct ttttcgagaa acgatgggca
     9961 atcagctcgc ccacaatgcg ttccgcttcg tgttcctcat tttttgcctc aatgacctgt
    10021 aatttttccc cttgccccag ttctgaaaac agccgcttgc taaacaagtg atcgttatta
    10081 tcaatcagaa tattggcaca atgcagaatc cgctggctgg aacggtaatt ttgctcaagt
    10141 ttaatcactt gcaaatcaaa atcttcccgt aaccgttgca tattttcagg cttcgcccca
    10201 cgccaagagt aaattgattg gtcatcatcg cccacgaccg taaagtttgg ctcgttgccg
    10261 acaatcagct taattaactc atattggctg gtgttggtgt cttgatattc atcaactaac
    10321 aaatagcgaa ttttctgttg ccaacgagat tttgcttcgg gaaattggcg gaacagcaac
    10381 accggcaaca taatcaaatc atcaaaatcc aacgcattat aagccttaag ttgattctgg
    10441 tagagctgat aaaaatgtga aaacactcgc tcacgttcat cacgcacacg agtaagtacc
    10501 ctttcaggcg aaagcaaatc gtttttccag ttagaaatag tggcaattaa ggctttcagc
    10561 agatccttat cttccgtcac attttcaggc aataaatgtt tcagcaaagc aatttgatcc
    10621 tgctcatcaa acaaggtcat acccgattta aaaccgagca atttatattc gcgttttaaa
    10681 atttcaaacc caagtgtgtg aaaagtcgaa atggttaaac ctttgctgtt ttctttgccg
    10741 atagaatgat ccacccgttc acgcatttcc cgagcagctt tgttggtaaa ggttactgct
    10801 gcaatctgct taggcgaata gccacaatgt gcaattaaat gtgcgatttt attaataatc
    10861 acccgagtct tacccgagcc ggcaccagcc agcacaaggc aagccccttt ggtatattct
    10921 actgcttgtt gttgttgaga attgagtttc attgaatcta ttcaaaagta attttgacaa
    10981 ctattttaac ggaaagaaaa caagcggtcg aattttcagg aaaatttgca aaaaactttg
    11041 aaaatccgac cgcttgttca tcagagaaaa atccccaaaa cgcaaatttt tcctttcaat
    11101 cttgcccctt tagctatatc attataagtt gattttttag gggcaaatgc ctgattttat
    11161 aactcctttt ctttttaatt taagggaaaa aaacagtaga tggaaaaagt agaacagaaa
    11221 gctatcattg agcttaaaaa tgtaacaaaa agctacggta gtaaaacgat tcttaaaaat
    11281 ttaaatttaa ccattaacga tggtgaattt ttaacaattt taggcccttc cggttgtggt
    11341 aaaacaactg cgttacgttt aattgccggt tttgaagatt taactgaagg ttcaattatt
    11401 cttgatgggc aagatgtttc taacgttccg gcggagcaac gcccggtaaa caccgtattc
    11461 caaagctatg cccttttccc acatatgacg atttttgaaa acgtggcttt cgggctgcgt
    11521 atgcaaaaag tgccaaatgc tgaaattgag ccacgtgtga tggaagcatt acgaatggtg
    11581 cgtttagaag accgcgctca acaaaaaccg gctcagcttt ccggtggtca gcaacaacgt
    11641 attgcaattg cccgtgcggt ggtaaataaa ccgaaagtat tgttgttaga cgaatcgctt
    11701 tctgcgttag attataaatt gcgtaaagag atgcaaaatg aattaaaagc attgcaacgt
    11761 caattaggca ttacctttat ttttgtgacc cacgatcagg aagaagcctt aaccatgtct
    11821 gatcgtatta tcgtaatgaa cgctggtaaa atcgctcaag acggtacacc acgtgagatt
    11881 tacgaagagc caagtaactt atttgtagct cgtttcatcg gcgaaattaa cgtttttgat
    11941 gcaactgtaa ttgagcgtgt tgatgcaact aatgtaaaag caaacgtaga aggtcgcatt
    12001 tgcaatatca aagtggaaga tttagaggtt cagccgaacc aaaaattaaa agtattgtta
    12061 cgccctgaag atattgtgat tgaggagtta gacgaaaacg aaagctcgaa agcaattatc
    12121 ggtcatatta tcgaccgtaa ctacaaaggt atgacattag agtctagcgt gagattagat
    12181 cataacggta tgaatgtatt ggttagcgag ttcttcaatg aagacgatcc gaacattgac
    12241 cacgaagtgg gacaaaaagt tgctcttact tggtatgaag gctgggaggt tgtgttaaac
    12301 gatgaaggcg aataacaaat tccaaaatgg tgcggtcgca actattttcg gttggttatt
    12361 acttttcgta ttagtgccga acgtactcgt tttaatcatc agcttcttaa cagaaaaccg
    12421 tcaaagtcag tattttgtgg actttgcatt tagttttgat gcttataaat cactgtttaa
    12481 tgacacctat gcagcagtat tgtggaactc gctatatatg gcgggcattg ccaccttttt
    12541 ctgtttgatc atcggctatc cctttgcatt ttttattgcc aaaatgccgg aaagaattcg
    12601 tccgttttta ctgtttttag tagttctacc gttttggact aactcactga ttcgtattta
    12661 tggcattaag attttcttag gcgtaaaagg ctttttaaat gaaagcttga tggctttagg
    12721 tataatcagc gagccaatgc gtttattaaa ctcagaaatt gcgattatta ttggtttagt
    12781 ttacattcta ttacctttta tgattctacc gctttattca tcaatcgaga aaattgataa
    12841 ccgcttacta gaagctgcaa aagacttagg tgcaaacgcc ttccagcgtt ttattaaagt
    12901 gactattcca ttaacaatgc cgggcattgt cgcaggttgt ttattagtat tacttccggc
    12961 aatgggtatg ttctatgtgg cagatttatt aggcggcggt aaaacaccgt tagtaggtaa
    13021 cattattaag agcttgttct taaataccaa ccaatttgca ttaggttcag cagtaagtat
    13081 tgcattaact atcttaatgg cattaatgct ttatgtttac tatcgtgcaa acaaattatt
    13141 aaataaaaag gtggagcttg aataatgaaa aagatgttta gaaacctttt tatgttggtt
    13201 gtttttgcat atctctatat tccaattatc attttagtga tcaactcctt taatgaagac
    13261 cgctttggat taaattggaa aggctttact tggaattggt atgagcgttt attcagtaat
    13321 gatacgcttg tacaagcaac attgaactca ttaactattg cgttctttgc ggcaacattc
    13381 tcaaccattt taggggcatt aacctctatt gcgctttacc gttaccgttt ccgtggtaaa
    13441 aagctagtgg gcggaatgtt attcgtggta atgatgtcgc ctgatatcgt aatggcggta
    13501 tctatgctcg tattatttat gatcttaggt atcaagctag gctttatttc gctattaatt
    13561 gcacacatta ctttctgttt gccttatgtg gtaattgcaa tttcctcacg cctcagcgat
    13621 tttgacggca aaatgctaga agctgcaaaa gacctaggtg caagtgaagt gactattttg
    13681 cgtaaaatta ttttaccact ggcattacct tcgattattt caggctggtt gttaagcttt
    13741 acgatttcgt tagatgacgt tattgtttca tctttcgtga caagcccaag ctacgaagtt
    13801 ttaccactga aaattttctc attggttaaa acaggtgtaa cacctgaagt gaatgcacta
    13861 gcaactatta tgattatttt ctcattaaca ttagtggtat taagccagtt agtagtgaag
    13921 aaaaaagtct aaaaatcact aaaaatcgta tacataaatc agcactttaa agagtattaa
    13981 agtgccgatt tttttacaaa aataagctaa aaaaacaacc gcttaagaat aatgaattct
    14041 tataaaaata gccataacta atcaatatct ttacaaagcc gttaatttac gctattaatt
    14101 gcctaccaat ataactaaaa agagtggtgc ttatgctgaa gtttattttt aaacgtcttc
    14161 ttgaggcgat tccaacccta ctaattctga ttaccttttc ctttttcctg atgcggcttg
    14221 ccccgggtag cccatttacc agtgagaaag cctatccgcc gaaagtaatg gcaaatatcg
    14281 aggcaaaata tcacctgaat gaaccgctgt ataagcagta ttttctttat atggaaaatc
    14341 tgtcaaaagg cgatttcggt ccatctttta aatataaaga tcaatcggta aataatctga
    14401 ttgcttctgc gtttcctgtt tcgataaaac tgggcattac tgcctttatt tttgcggtgc
    14461 ttatcggttt aaccgcagga actatcgctg cacttaagca aaatagtaaa tgggattatt
    14521 tagtgatggg cttttcaatg acgggtatta ttatgccgag ctttgtcttt gctccgctgt
    14581 tggtactcat gtttgcgatt tatctcaaat ggttgcctgc cggtggttgg aacggtggtc
    14641 agctctacta tatggtttta cctgttctct ctttaaccat tagctatgtt gccggcattg
    14701 cccgtattac tcgtggttca atgattgagg tgttgcactc taattttatt cgcaccgcta
    14761 aggcaaaagg cttgccaatg cgtaaaatta ttttcaaaca cgctttgcgt ccggcattgt
    14821 tgcctgtgat cacttattta ggcccggctt ttgttggcat tattaccggc tcgatggtaa
    14881 ttgaaagcgt gtttggctta ccgggaatcg ggcagttgtt cgtaaacgga gcattaaatc
    14941 gtgactattc attagtatta agcctaacca ttttggtagg tacgctcacc attttattta
    15001 atgcgattgt tgatatttta tatgcggtca tcgacccgaa aattcgttat tcataggagt
    15061 aaagcggaaa atgcaaaatt cttcaaaaaa tcaaccgctt gttgaggtta cctcaaccat
    15121 tcaaggacga agtttatggc aagatgcacg ccgccgtttt ttccgaaata aggcggctgt
    15181 ggcaagtttg attattcttt gttgtattat tctttttatt acctttgccc caatgctaat
    15241 gccgtttagc tatgaagata ccgattggaa tatgatgggg attgctccgg attttgaatc
    15301 tcaacactat ttcggtactg attcttcagg gcgtgatttg ctggttcgag ttgcaatcgg
    15361 tggacgcatt tcgttaatgg tagggattgc cggtgcatta attgcggtgc ttatcggtac
    15421 aatctatgga gcaatttccg gttatttcgg cggtaaagtc gatatggtga tgatgcgttt
    15481 tctggaaatt ttaagctcat tcccatttat gttcttcgta attttgctgg ttacgttctt
    15541 cgggcagaat attttcctga ttttcattgc aatcggtatg gtagcgtggc tgaaccttgc
    15601 ccgtattgta cgtggtcaaa ctctttcgct taaaaataaa gagtttgtgg aagcagcgat
    15661 tgtgtgtggc gtttcccgcc gtcaaattat ttggcgacac attgtgccta acgttttagg
    15721 cttagtggtg gtttatgcct cccttgaagt accatctctg attttgtttg aatcgttctt
    15781 aagtttctta gggcttggta cacaagagcc gatgagcagt tggggggcat tattaagcga
    15841 cggagcggca caaatggaaa cctcgccttg gctactggct ttccctgcct ttttcttatg
    15901 tttaacactg ttttgtttta attttattgg tgatggcttg cgtgatgccc tcgatccaaa
    15961 agataaatag aggtttagaa tggaattatt agcagtaaat aatctcgatg tttatttaaa
    16021 aacggacgaa gaattagttc acgcagtgcg taatgtctcg ttctcgattg aaaaagggca
    16081 aacccttgcg attgtggggg aatcgggttc gggtaaatcc gttacttcaa tggcaattat
    16141 gcagttattg cctaaaaata tcgtctcatt cggtgaacgc tcaagcatca tttttgaaga
    16201 acaaaacttg cttactctat ctgaaaaagc aatgcaaaca gttcgaggtg atcgcatcgg
    16261 tatgattttc caagagccaa tgacctcact caatccttat atgccgattg gcaagcaggt
    16321 tgctgagacg gttcaaaccc ataatccgca aatcagcaat gccgaagcgg aaaaaatggt
    16381 gttggaaact ttgcaaaaag taaaaattcc cgatgcggaa aagaaaatga tttgctatcc
    16441 gcacgagttt tccggcggtc agctacaacg aattatgatt gcaatggcaa ttatcaacaa
    16501 acccgattta ttgattgccg atgagccgac caccgccctg gatgtcacaa cccaagcgga
    16561 aattttggat ttaatgcacg acttacagcg tgatatggga atggcgatta tcttaatttc
    16621 ccacgattta cgcttggtgc ataaatacag tgacttagtc tgcgtaatgc aaaacggcga
    16681 aattattgag cgaggcgaaa cggaaactgt gttcaccaat ccgcaacatc cttatacggt
    16741 ggagctactt accccgattc caactaattt aaaaggggaa ttaccgccaa atgcaccaac
    16801 cttgcttcag ggtgagcata ttaaggtaga ttatatttta aaacgctcgc tattcggtaa
    16861 gccgaaaaag gtgtttaatg cgttaaaaga tatttcattg cacttgaaaa ccggcgaaac
    16921 gctcggcatt gtaggcgaat ccggctccgg gaaatctacc cttgggcgtg ccattatgca
    16981 gattttagat tatcgcggca atattacatt tgcaggtaag acactggcta atctgaataa
    17041 agccgaacgt caagccctga aaaaagatat gcaaatggtg ttccaagacc cgttcaactc
    17101 actttctcct cgcttaacag ttggggaaat tattgctgag ggcttaaccg tacattgccc
    17161 tcaaatgagc aaaaccgaac ggcgggaaaa agtaatgaaa atgttggaag aggttaatct
    17221 caaccctgca atgattaacc gctatccgca cgaattttcg ggcggacaac gccagcggat
    17281 tgcgattgca agggcaatca ttttagagcc gaaatttgta ttgcttgatg agccaacctc
    17341 agcacttgac cgctctactc agatcactgt aattgaattg cttaaccgct tacagaaaaa
    17401 atacggctta agttatattt tcatcagcca cgatttggcg gtcatcaagg cacttagcga
    17461 ccgagtgatt gtaatgagcc aaggtgagat tgtagaaagc ggtgatgtca ctcaaatttt
    17521 tgaaaatcca caacaagaat acaccaagcg gttgatttta gcctctaatt tgtaacccct
    17581 tccacaaggt cttattctac caaaaaacaa gaccttgtca ttttatgcta gcaaaacatt
    17641 gtaattttga tattttattt caattttttg aaaaaatatg gaactttata taaaactcac
    17701 tttctaaaca atacgttatc tgaactaaga taacgcttat ttaaaggaaa atatatgaaa
    17761 aaattgatga tattcgcaac aactgccatg attgtaagca atttagccca tgcagcaggt
    17821 gaacaaagtg atgcaagaga agcccacgaa agcaccgtaa aaacctcaac tgttaagtat
    17881 agctgccaaa acggcaaaaa attaagcgtg aaatacggct tcaataaaca aggcattcca
    17941 acctatgctg aggcaaaatt aagcggtaaa aaacgtttta tgccgatcaa cctatacacg
    18001 acagatgcaa ccggcactaa ctttggtgac gaaaacaatt tcagccttta cggtgatcca
    18061 atggaattta ccaaccaccg taaagcatca gtaaatatcc aaagccccgc aagtgaaatt
    18121 ttatataaag gttgcacacc tcaaaaatag ataaaaagta aaatgagtcc gctctgataa
    18181 gtggcttttt aatagctgtt tattgcagat aggaaagcat tttgttttta tctactatcc
    18241 agaaacaagc ggttaaattt gtttaatttt ttacaaaaaa tgggccaaaa ttaacc
//
LOCUS       DANLVT010000042        18220 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.042, whole genome shotgun sequence.
ACCESSION   DANLVT010000042 DANLVT010000000
VERSION     DANLVT010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18220)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18220)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18220
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.042"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(162..4148)
                     /gene="hrpA"
                     /locus_tag="PXC99_001218"
     CDS             complement(162..4148)
                     /gene="hrpA"
                     /locus_tag="PXC99_001218"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HDL5417677.1"
                     /translation="METPLQKNHKKPPLVKLENITTADFRRLLGRLKGAENIKNIDHK
                     RSVLAEISQDLTACQARFFARTQHAQNLKIDYPDLPVSARREEILKLISENQVVVIAG
                     ETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRIAARSVATRIAEELKSELGETVGYKV
                     RFNDQVSENSLIKLMTDGILLAEIQHDSYLNQYDTLIIDEAHERSLNNDFILGYLKQI
                     LHKRPDLKVIITSATIDVERFSKHFNNAPIIEVSGRTFPVEVRYRPIVEDQDQLQGIL
                     NAVDELQAEGRGDILIFMNGEREIRDTAEALQKQELRHSEILPLYARLSAAEQQRIFQ
                     PSGGLNRIILATNVAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASAN
                     QRKGRCGRTSEGICIRLYSEEDFNSRPQFTDPEILRTNLAAVILQMTSLGLSDIANFP
                     FVDAPDSRQIQDGIRLLEELQAIIPNEKIPSTACGGGLGRGEIRSNDGTPPLPTSPRK
                     RGDGFRLTPIGRQLAQLPVDPRLGRMVIEAAKNGSLHEVMMIVSALSIQDPRERPQEK
                     QQSADDKHRRFADKESDFLAFVNLWHFIQAQQKELSKNQFRNLCRKDYLNYNRVREWQ
                     DIYHQLRLAVREMGLKINSEPASYQPIHTALLAGLLSHIGLKDNEKMHYLGARNAHFF
                     IFPNSALFKKQPKWVMAAELVETTKLWGRMVARIEPEWVEPLAVHLTKSSYSEPHWAK
                     SKGAVMASEKVSLYGIPIVAQRSVNYGSIDPTVSREIFIRSALVEGECHNNYKFFKEN
                     HRLIREVEALEHKSRRRDILVDEQVLFEFYDQRIGTEVVSSKHFDTWWKQASKKDPEL
                     LNFEKSFLINDNANLASELDFPNFWHQGDLKLKLSYQFEVGKDHDGVTVHIPLPLLNQ
                     VEPEGFDWQIPGLRHELIVSLIKSLPKSLRRNFVPAPNYADAFLGRAEPFKKPLLDNL
                     SHELRRMTGVLVEPEQWDLSQLPPHLRMTFRVIDDKGKKLQESENLDELKFALKDEVQ
                     NTLSNIADDGIEQSGVHIWNFAELPQFYEQKKAHFSVKAYPAIVDEQTAVGVKLFETE
                     FEQARAMQAGLRRLLLLNVPSPIKYLHEKLPNKAKLGLYFAPFGKVLELIDDCIACAV
                     DQLVEEFGGFVWTEEKFTQLHEFVRANLNDKTVEIAKQVEKCLTLAYELNKRLKGKLD
                     FTMAFALSDIKTQIEGLIYPDFVTKTGYARLADLYRYLTAIERRLDKLLVDSNTDRAK
                     MLRVEAVQEAYKQLLAKLPKSKAVPDEVLEIRYMIEELRVSLFAQQLGTKYPISDKRI
                     LNVINEIK"
     gene            complement(4252..4704)
                     /locus_tag="PXC99_001219"
     CDS             complement(4252..4704)
                     /locus_tag="PXC99_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
                     /protein_id="HDL5417678.1"
                     /translation="MTLQFNAVALLLVVLIILGLISQNSAVTISAAVLLIMQQTLLSK
                     FIPFVDQYGLKIGIIILTIGVLSPLVSGRITLPELAQLLNWKMALSIIAGVLVAWLGG
                     RGVNLMGSQPVLVTGLLIGTVIGVAFLKGVPVGPLIAAGILSLIVGKT"
     gene            complement(4767..5036)
                     /locus_tag="PXC99_001220"
     CDS             complement(4767..5036)
                     /locus_tag="PXC99_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417679.1"
                     /translation="MDAAMSLRFDKLRFVKRLQEANQTPEMAEAFANALDEALEQSQS
                     PLATKADLQLELEKLKNEINTTIFKAITLNITILGFLMAIMKFIN"
     gene            complement(5134..5730)
                     /gene="grpE"
                     /locus_tag="PXC99_001221"
     CDS             complement(5134..5730)
                     /gene="grpE"
                     /locus_tag="PXC99_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HDL5417680.1"
                     /translation="MTTQNEHLQEEVKQEEIQPEVVTEETQAEEQNTPQEEPLALAQA
                     RIAELEAYIAEADKREQDIQLRAQAEIQNIRRRAEQDVEKAHKFALEKFSKELLTVVD
                     NLERGLDALDKAVTDETTQALVDGVEMTHKEFINTLAKFGVVAIGEVGEAFNPELHEA
                     ISMQPAEGIEANHVSTVLQKGYTLHGRVIRPAMVMVAN"
     gene            5952..7046
                     /locus_tag="PXC99_001222"
     CDS             5952..7046
                     /locus_tag="PXC99_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HDL5417681.1"
                     /translation="MKKLAGLFAAGLATVALTACNEEKAAEPKATAAEAKPQATNQTV
                     HLYTWTEYVPEGLLDEFTKETGIKVEVSSLESNETMYAKLKLQGKDGGYDVIAPSNYF
                     VSKMAKEGMLAELDHAQLPVIKELNQDWLNKPYDQGNKYSLPQLLGAPGIAFNTADYK
                     GETFTSWGDLWKPEFAGKVQLLDDAREVFNIALLKLGKNPNTTNPDEIKEAFEELKKL
                     RPNVLSFTSDNPANSFIAGEVSVGQLWNGSVRIAKKENAPVDMVFPKEGPVLWVDTLA
                     IPANAKNKENAHKLINYLLSAKVAEKLTLAIGYPTSNVEALKVLPKEITEDTAIYPSA
                     EVLQKSQWQDDVGDAIELYEKYYQELKAAK"
     gene            7182..8573
                     /locus_tag="PXC99_001223"
     CDS             7182..8573
                     /locus_tag="PXC99_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HDL5417682.1"
                     /translation="MNLRWQEYPENARKLFKLSLPIFISQLSASGMGLADIVMAGLVS
                     DDDVSAIAVSNSIYFPLFLFVSGLLNAITPTVSYLNGSSNRHLIANQVRQGYWIVFAM
                     SIPLMAIFLNSHLILDLMQTPAEFSIKSQQYLAVMAVGLIPALLAVSLRCMNDGLSNP
                     KPAMRITFFGLLLNIPLNYIFIFGKFGLPEMGAVGCGVATAIVNLIMFFMLLHYCYTN
                     SAQKDIRLFEKWIDAPSGQILLKLCKLGLPIAFAIFTEVMLFSTSSLFLSPLGSQVVA
                     SHQAALQTSSLFFMIPMSFGIATTIMIGQTLGQKNVEGAKILSYHALITATALAIIAA
                     IIIILLKNFIPFAFTNNPISIAITAHLLIFAAVYQIPDAIQAVANGILRGYKHTQPIL
                     YVTLFCYWGVSMPLGYILARTDWIVQPMAAQGFWLVFCIGLSLAGGLLLWQMRKIQAV
                     PKAQLIAKLERIK"
     gene            8632..12156
                     /gene="recB"
                     /locus_tag="PXC99_001224"
     CDS             8632..12156
                     /gene="recB"
                     /locus_tag="PXC99_001224"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit beta"
                     /protein_id="HDL5417683.1"
                     /translation="MKNLNPIQLPLNKSVLIEASAGTGKTFTIANLYLRLLLGIGCNP
                     LTVEQILVVTFTKAATEELKNRIRKNIQQCADFLKDQADGLEVESTKSYRNNLDFLAQ
                     IYPLIPNIHEALLRLSIAEREIDTASVFTIHGFCQKMLVQFAFESGVRFDLDLQPNQS
                     DLLKKLSEEVWREQFYPQDLAITYAVAEQLGTPEYALNAVRRYLSTELPEPNASLNQD
                     IAEHLAQYQQFINEVKSYWKTHSDELVETIRHDLKHKITLHGGWYRATTFEAGVEVMN
                     QWANSQHNHFPAGLYLFTTEKIAAGTKKSCEPIDSPHLAKNQAFLTAYKERFENSLSA
                     MLQYQFLIALKAKLAEYKQSHPQRSFDDLLTMLNQALKNLHTGEALSQKIRAMYPFAM
                     IDEFQDTDLTQYEIFSQIFMAENAENGFIMIGDPKQSIYKFRGADIFTYLRAAKQADE
                     QFTLGKNWRSLPEVVQAVNNLFSFANDNSPFLYEDIGFHPVEADSQKGQLVSEQGHFV
                     GYITENSKLDDLAEMCAYQIHQQLEAMAQGKFGVEKNGEFQSFAAKDIAILVRKGSQA
                     KRIKKALAKRNIKSVYLAESASVFGSEIATELCWLLQAALNPYHYKALLSALGSTLWG
                     LTAAEIHRYKENEQLWDLKVNQFVEYSNIWKEQGVLPMLHKIYLEQGIIERLKGLENA
                     DRLITDLLHLTEILQETSQALESEAELLRWYEKQVNSPDFNDEQQLRLESEEELIKIV
                     TIHGSKGLQYPIVWLPFVSQKSEGDTQTALSLYRNSQGALDWCLGSEEASFSLQYEAY
                     AEDLRLLYVALTRAESQLNLVLPKEISGWSPLHYLLADGEIPTGKVPVSDYFSQKRIA
                     ANLVEVAGELPFSLWEGEQSSDDYQAKTFSGNIRVVGQITSFTSLYAQHERFSEGKSE
                     RVMDLAQDRDVHIETIEAGYSSETAAFSPFQFPHGIKVGTVLHHFFEHCQFNEQIDRE
                     AVAKVCEQLGLSEEWIEPTALWFERILTTPLAEANFCLKAIDETKRLNEWQFYLRLKN
                     DKALHQLNALLKQHSPLAKTLPELQLPQLEGFVRGFVDCIVQVEEKFYLIDYKSNFLG
                     YLPQNYAKEHIQREMGRQRYDLQYLLYTLALHRYLTARLGEKYDYERDFGGVAYLFLR
                     AMNGENDNGVYFDKPTKQLIEEMDRLFG"
     gene            complement(12198..12680)
                     /gene="greB"
                     /locus_tag="PXC99_001225"
     CDS             complement(12198..12680)
                     /gene="greB"
                     /locus_tag="PXC99_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HDL5417684.1"
                     /translation="MAKSNYITRSGWQALDQELKFLWREERPKVTQAVSDAAALGDRS
                     ENAEYIYGKRRLREIDRRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEEGEAK
                     QYRIVGCDEFDPAKNWISIDSPVARALIGKQVDDEIRVETPLGKVLLYINKIWYEQAS
                     "
     gene            complement(12731..14011)
                     /gene="pepB"
                     /locus_tag="PXC99_001226"
     CDS             complement(12731..14011)
                     /gene="pepB"
                     /locus_tag="PXC99_001226"
                     /EC_number="3.4.11.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase PepB"
                     /protein_id="HDL5417685.1"
                     /translation="MTAMKISLSTQNAPEIWGKNAILSANDAGFTVHNPNNDLATIQK
                     AARKIKNQGISTVELTGDSWDLESCWAFHQGFHSVKNQGSVQYPDLDEQQAEFDNRVK
                     CATFVRELINKPSDKLTPEKLAEQAVEFIQKMAKPNTVSYQIIRGEALQEQGYHGIWT
                     VGKGSANPPAFLVLDFNPTNDENAQVLACLVGKGITFDTGGYSLKPSDSMSTMRTDMG
                     GAALLTGSLAFAIARGLNKRVKLYLCCAENMVSHNAFKLGDIITYRNGVTVEVLNTDA
                     EGRLVLADGLIDACKQNPQFIIDAATLTGAAKVAVGNDYHSVLSMDDNLTEALFKSAK
                     TENEPFWRLPFEEFHRGQIASSFADIANIGSVPVGAGASTATAFLSYFVENYQQNWLH
                     IDASATFRKTASDLWAAGATGLGIRTVANLLLSK"
     gene            complement(14150..14971)
                     /locus_tag="PXC99_001227"
     CDS             complement(14150..14971)
                     /locus_tag="PXC99_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010869033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase, lipoprotein e(P4) family"
                     /protein_id="HDL5417686.1"
                     /translation="MKNIKLSAMSLTALFVLTACSHTHKNSDEHHQMVLQEQATLGIN
                     WMQQSGEYQALAHQAFNAAKVAFDQAKVKKGKKKAVVVDLDETMVDNSLYAGWQVKNH
                     KPFDGESWTRWVNARQTGAIAGAVEFNNYVNSHKGTMFYVSNRKDSSEKAGTIDDMNK
                     LGFSGVSEQTLLLKKDKSNKTPRFEEIEKQGYEIVLYIGDNLNDFGDATYRKSNAERR
                     AFVAENSQQFGKKFIMLPNPNYGDWEGGLDKDYYKGNAESRVKIRHNAIKAWDGK"
     gene            15119..16062
                     /locus_tag="PXC99_001228"
                     /pseudo
     CDS             15119..16062
                     /locus_tag="PXC99_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251085.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
     gene            complement(16175..17338)
                     /locus_tag="PXC99_001229"
     CDS             complement(16175..17338)
                     /locus_tag="PXC99_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HDL5417687.1"
                     /translation="MKRKTLATLVLIAALGIGGYFYYQQQTNKPQIHYITQAVTRAEI
                     NKNVLATGSVRANKRTEVGAQVSGKIQKLYVELGQSVKQGDLIADIDSSNQSNTLSTA
                     QARLSSYKAQLTSAQVALEVAQSNYNRLNKLYRANSASLNDLETAKNTLASAKATVDN
                     IKAQLKSAEISVNDAKTNLTYTQIISPMDGVIVSVPVSVGQTVNSNQTSPTIVQVADL
                     SKMLIKLEISEGDIAQVKVGQKVKFSTLAEPNREYSATIDSVDPALTTLTDNNYTEQS
                     GNTEAVYYYANVSVDNADNSLRIGMTTQAQITIDKREQVLVVPTSVIKKRGKENYVLV
                     LENEQSVERKIQIGISDTQNTEVLAGLNEGDQVIVTQRADDEKISTARGPRMF"
     gene            complement(17404..18219)
                     /locus_tag="PXC99_001230"
     CDS             complement(17404..18219)
                     /locus_tag="PXC99_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDL5417688.1"
                     /translation="MTLPFRAIISDLDGTLLNANHKIGDFTIDTLEQLSKKGVDIFFA
                     TGRNHPDVSQIIGKVNVKNAMLVTSNGARANNLEGKKILNHYLPEDLAFELMNIEFDD
                     QNVCLNSYQGDEWFINKEIAELKKFHQDSGFSYQVVNFAHHHGRNTEKVFFIGKTAEA
                     LVPIEHYIRDTYGDRVQMTYSALLCLEVMAKGVCKANALAELVKLRGYTLADCIAFGD
                     GMNDVEMLSLAGKGCLMGNADPRLKAVLPNNEVIGFNKDEAVASYLRATFGIV"
BASE COUNT         4927 a         3805 c         3957 g         5531 t
ORIGIN      
        1 tttctgatat atttagtttt ctaattttta tcttgagatt tttttaatca aaaaaatgta
       61 gcaggtttgc ttctgaagcg agaggaatag gtattcgaga aaacaagcgg tcagagttgc
      121 aaaatttttt acttatctga ccgcttgttg tatagggaat attactttat ttcattgatc
      181 acattcaaaa tccgcttatc cgaaatcggg tattttgtgc cgagctgttg agcgaacaga
      241 ctgacccgca gttcttcgat catatatcga atttccagta cctcgtccgg caccgctttg
      301 gattttggca gtttggcaag gagctgttta tatgcctctt gcactgcttc cacccgtagc
      361 attttggctc ggtcggtgtt gctgtccacc aacagtttat ccaaacggcg ttcgatagcg
      421 gtcaaataac ggtataaatc tgcaaggcgg gcgtagccgg ttttggtgac aaagtcgggg
      481 taaatcagcc cttcgatttg ggttttgatg tcgcttaacg caaacgccat cgtaaaatcg
      541 agcttgcctt ttaaccgctt gtttagctcg taggccagtg tgaggcactt ttcaacctgt
      601 ttggcaattt ctacggtttt atcgtttaaa tttgcccgca caaattcgtg cagttgggtg
      661 aatttttcct ccgtccagac aaacccgccg aactcttcta ccagctgatc taccgcacag
      721 gcaatgcagt cgtcaatcag ctccaatact ttgccgaacg gggcaaaata taagcccagc
      781 ttggctttgt tcggcagttt ttcgtgtaga tatttaatcg gcgatggcac atttagcaac
      841 agcagacggc gaagtcctgc ctgcattgca cgagcctgct caaattccgt ttcaaacagt
      901 ttcaccccca cagccgtttg ttcatcgaca atcgcagggt aggctttcac gctgaaatgg
      961 gcttttttct gctcatagaa ctgtggcaat tcggcaaaat tccaaatatg cacaccactt
     1021 tgctcaatgc cgtcatcggc aatgttggaa agggtgttct gcacctcatc tttcaaggca
     1081 aatttcagct catcaaggtt ttcgctctct tgcagtttct tgcctttatc atcaatcaca
     1141 cggaaagtca tccgcaaatg tggcggcagt tggcttaaat cccactgttc aggctcgacc
     1201 aatacacccg tcattcggcg tagttcgtgg cttagattgt ccagcaacgg ttttttaaac
     1261 ggctcggctc gccctaaaaa ggcgtccgca taattcggcg ccggcacaaa atttcgccgt
     1321 agcgatttcg gtaaagattt aatcagcgag acgatcagct cgtggcgtag ccccggaatt
     1381 tgccaatcga aaccttcggg ttccacttgg ttaagcagcg gtagcggaat atgcaccgtc
     1441 acgccatcgt gatcttttcc gacctcaaac tgatagctca gtttgagttt taaatcgcct
     1501 tgatgccaga aattcgggaa atccagctcg ctggcaaggt tggcgttgtc gttgatcagg
     1561 aacgattttt caaagttcag cagttcagga tcttttttgc ttgcctgttt ccaccaagta
     1621 tcaaaatgct tgctcgacac aacttcggtg ccaatccgct gatcgtaaaa ctcaaacagc
     1681 acctgctcgt ccaccaaaat atcacggcgg cgggatttgt gttccaatgc ctcaacttca
     1741 cggatcaagc ggtgattttc tttgaaaaat ttgtaattgt tgtgacattc gccttccacc
     1801 aacgccgagc ggataaaaat ctcacggctg acggttgggt ctatcgagcc ataattcacc
     1861 gagcgttgtg ccacaatcgg aatgccgtag agcgacactt tttccgatgc cattaccgct
     1921 ccttttgact tcgcccagtg tggttcgctg taactggatt tagtgaggtg tactgccaac
     1981 ggttccaccc attccggctc aatgcgagcg accattcgtc cccaaagttt ggtagtttcc
     2041 accagctctg cggccattac ccatttcggc tgttttttga aaagtgccga gttcgggaaa
     2101 atgaaaaagt gggcatttct tgctcctaaa tagtgcattt tttcattatc tttcaagccg
     2161 atatgcgaca acaagccggc gagcagggcg gtgtgaatcg gctgataact tgccggctca
     2221 ctgttaattt ttaagcccat ttctctaact gcaaggcgga gttggtggta gatatcctgc
     2281 cactcccgca cacggttgta gttcaaataa tccttacggc agagattacg gaactggttt
     2341 ttcgacagtt ctttttgttg ggcttggata aagtgccaca aattcacaaa ggctaagaaa
     2401 tcgctctctt tatcggcaaa acggcggtgt ttatcgtctg ccgactgctg tttttcctgc
     2461 ggacgctcac gagggtcttg gattgagaga gctgacacaa tcatcatcac ttcgtgcaac
     2521 gaaccgtttt tcgccgcctc gatcaccatt ctgcctaagc gaggatcgac tggcagttgg
     2581 gcgagttggc gaccgattgg ggttaatcta aacccatccc cccgtttacg gggggaggtt
     2641 gggagggggg gagtgccatc attagaacgg atttcccccc tccctagccc tcccccgcaa
     2701 gcggtggagg ggattttttc atttggaata atcgcctgta attcttccaa caaccgaatc
     2761 ccgtcctgaa tttgtcggct gtcaggggca tcaacaaacg ggaaattggc aatatcactc
     2821 aatccaagcg aagtcatttg taaaataacc gctgcaaggt tagttcgtag aatttcagga
     2881 tcggtaaatt gtggacggct gttgaaatcc tcttctgaat agaggcggat acagatccct
     2941 tccgaggttc gcccacaacg ccctttccgc tggttggcgg aggcttgcga aatcggctca
     3001 atcggcaagc gttgcacttt ggtgcggtag ctataacgag aaatacgagc cgtgccggtg
     3061 tcgatcacat atttaatatt cggaatagtg agggaggttt ctgccacgtt ggtcgccaga
     3121 ataattcggt ttagcccacc gcttggctgg aaaatccgtt gttgttcggc agccgataag
     3181 cgggcgtaaa ggggtaaaat ttcgctatgt cgcagttcct gcttttgcaa ggcttcggca
     3241 gtgtcacgaa tttcccgttc accgttcata aaaatcagaa tatcgccacg cccttcggct
     3301 tgcagttcgt ccaccgcatt tagaatacct tgcagttgat cttgatcttc cactatcggg
     3361 cgataacgca cttccaccgg gaatgtccga ccagagactt caataatcgg ggcgttgttg
     3421 aaatgtttgg aaaaacgttc tacatcaata gttgccgagg tgatgatcac tttcagatcg
     3481 gggcgtttgt gcagaatttg tttcagataa cccaaaataa aatcgttgtt cagcgaacgc
     3541 tcgtgagctt cgtcaataat cagcgtatcg tactgattta aatagctgtc gtgctggatt
     3601 tccgccagca gaataccgtc cgtcattagc ttgattaagc tgttttcact gacttgatcg
     3661 ttaaagcgga ctttgtaacc gaccgtctcg cccagttccg atttcagctc ttcggcaatg
     3721 cgagtcgcca ccgaacgtgc ggcaattcgg cggggctggg tatgcccaat caagcccttc
     3781 accccacgcc cgagttctaa gcacattttc ggtaactggg tggttttgcc cgaaccggtt
     3841 tcccctgcga tcaccaccac ctgattttcg ctaatcagtt ttaaaatttc ctcacggcga
     3901 gcggaaacag gcagatcagg gtagtcaatt ttcaggtttt gggcgtgctg agttcgtgcg
     3961 aaaaaacgtg cctgacaagc ggtgagatct tgcgaaattt ctgccaaaac tgaccgcttg
     4021 tgatcgatgt ttttaatatt ttccgcccct tttaagcgac cgagcaggcg gcggaaatcg
     4081 gcggtggtga tattttccag cttcacaagc ggtggtttct tatgattttt ttgcaaaggt
     4141 gtttccattt aatttctctt ttgcattaag accttgtgat ttattgtagg gtgggcgtaa
     4201 gcccacgtaa cagaataggg attttatgcg tggacttacg tccaccctac attaggtttt
     4261 accaacaatc agtgacaaaa tccctgccgc aatcaacggc ccgaccggta cgccttttaa
     4321 gaacgccacg ccgatcaccg tgccgattaa aagcccagtt accaacaccg gctggctgcc
     4381 cattaaattc acgcccctgc cacctagcca cgctaccagc acgccagcaa ttattgagag
     4441 tgccattttc cagttcaata gttgggcaag ttcgggaagc gtaattcgcc ctgaaaccaa
     4501 ggggctaagt acgccgatgg ttaaaatgat aatcccgatt tttaagccgt attgatcgac
     4561 aaaggggata aatttagaaa gtaaggtttg ttgcataatc agcaatacgg cggctgaaat
     4621 agtaaccgca ctgttttggc tgatcagccc taaaataatc agcaccacaa gtagaagtgc
     4681 cactgcgtta aattgtaaag tcataggatt aaaacgtaaa aacccttact tcatagaagt
     4741 aagggagtgg ttaattaaac gttgagctag ttaataaatt tcattattgc cattaaaaag
     4801 ccaagaattg tgatatttaa ggtaattgct ttaaatatcg tggtattgat ttcatttttt
     4861 agcttttcaa gttcaagttg caaatcagct tttgttgcta gtgggctttg actttgctct
     4921 aaggcttcat cgagagcatt agcaaatgcc tcagccattt caggtgtttg attggcttct
     4981 tgcaagcgtt ttacaaaacg taatttgtca aatcgtaggc tcatagctgc atccatttca
     5041 attatcctct tgtggttaag ttataaacta atttagcata atcacaagca ggaattttag
     5101 gagattttgt gatcttcgtc gaaaatcgac aatttagttt gccaccatca ccattgccgg
     5161 gcgaatcact cgtccgtgaa gcgtgtagcc tttttgtagc actgtgctga catggttggc
     5221 ttcaattcct tcggcaggtt gcattgaaat agcttcgtgc aattcagggt taaatgcctc
     5281 gcctacttcg ccaattgcca ccacaccaaa tttagccagt gtattgatga attctttatg
     5341 agtcatttca acgccgtcaa ctaacgcttg agtggtttca tcggtcacgg ctttatcaag
     5401 ggcatctaat ccacgttcaa ggttatcaac cactgttaac aattctttgg agaatttttc
     5461 taaagcgaat ttgtgagctt tttcaacatc ttgctctgca cggcggcgga tattttgaat
     5521 ttctgcttga gccctaagct gaatatcttg ctcacgtttg tcggcttctg caatataggc
     5581 ttctaactcg gcaattcgag cttgagcgag agctaacggt tcttcttgag gtgtattttg
     5641 ttcttccgct tgagtttctt cagttacaac ttcaggttga atttcttctt gttttacttc
     5701 ttcttgtaag tgttcatttt gagtggtcat tttttatcct ttaaaagact aatctggaaa
     5761 tgtaaatctt ccttaatata gcgataaatt aagggatttc aagcatatct ctttcttttt
     5821 gcgaaaataa ttcacttttt aatcagaaaa ggcttgcaaa atacgggggg gggcttaaaa
     5881 tgccctagtc ttttccgccc ttaggcaagg ctatattttt taatcacttt tctttaacgg
     5941 agaaaactta aatgaaaaaa ttagcgggtt tatttgcagc aggtttagca acagttgcat
     6001 taacagcgtg taatgaagaa aaagcggcag agccaaaagc aactgcggct gaagcaaaac
     6061 ctcaagcaac aaatcaaaca gttcaccttt atacttggac tgaatatgtg cctgaaggtt
     6121 tgttagatga atttacgaaa gaaaccggca ttaaagttga agtttcaagt cttgaatcta
     6181 acgaaacaat gtacgctaaa ttaaaattac aaggcaaaga tggcggttat gatgtaattg
     6241 ctccatcaaa ctactttgta tctaaaatgg cgaaagaagg aatgttagcg gaattagatc
     6301 acgcacaact tccggttatt aaagaattaa accaagattg gttaaataaa ccttacgatc
     6361 aaggaaacaa atattcatta cctcaattat taggtgcgcc gggtattgca tttaatacgg
     6421 cagattacaa aggtgaaaca ttcacttctt ggggtgattt gtggaaacct gaatttgcag
     6481 gtaaagtaca attattagat gatgctcgtg aagtattcaa cattgcgtta ttaaaattag
     6541 gtaaaaaccc aaatacaact aatccggatg aaatcaaaga agcctttgaa gagttgaaaa
     6601 aattacgtcc aaatgtgctt tcatttacct ctgataaccc ggcaaactca tttattgctg
     6661 gtgaggtttc tgtaggtcag ttatggaacg gttctgtacg tattgcgaag aaagaaaacg
     6721 caccggttga tatggtattc ccgaaagaag gtcctgtgct ttgggtcgat actttagcca
     6781 ttccggcaaa tgcgaaaaac aaagaaaatg cacataaatt aatcaactac ttattaagtg
     6841 caaaagtagc tgaaaaatta acgttagcga ttggttaccc aacttcaaac gtagaagcat
     6901 taaaagtatt accgaaagaa attactgaag atacagcaat ttacccatct gcagaggttt
     6961 tacaaaaatc tcaatggcaa gatgatgttg gtgatgcaat tgagctttac gaaaaatact
     7021 accaagagtt aaaagcagca aaataatagc tgattaattc tgaagcctct agggagcaat
     7081 ctttagaggc tttctctttt gagttgcaaa aaatttggca aaaacgaccg ctttctaagg
     7141 tacaatcata aaaacatact tagattttga gagattaaac catgaactta agatggcaag
     7201 aatatcctga aaatgcccgc aaattattta aactatccct acccattttt atttctcagc
     7261 tttcagcttc cggaatgggg ctggcggata ttgtaatggc tggcttggtg agtgatgatg
     7321 atgtctcggc gattgcggta agtaattcga tttactttcc gctctttctg tttgtgtcag
     7381 ggttgctgaa tgcaattacc ccaaccgttt cttacttaaa cggctcgagc aatcgccatt
     7441 taattgctaa ccaagtaagg cagggctatt ggattgtgtt tgcaatgtct attccattaa
     7501 tggcaatttt cctaaacagc catctgattt tagacttaat gcaaacaccg gctgagtttt
     7561 caatcaaatc gcaacaatat ttagcagtaa tggcagttgg gcttattcct gctttgctgg
     7621 cggtgagttt acgttgtatg aacgatggat tatctaaccc taaacctgcg atgcggatta
     7681 cctttttcgg tttattgctg aacattccgc taaactatat tttcattttc ggcaaatttg
     7741 gcttgcctga aatgggagcg gtaggctgtg gtgtagcaac cgcaattgtg aacttgatta
     7801 tgttttttat gttgttgcat tattgctaca ccaattctgc ccaaaaagat attcgtttgt
     7861 ttgagaaatg gattgatgct ccaagcggtc aaattttgct aaaactttgc aaattagggc
     7921 tgccgattgc ctttgcgatt tttaccgaag tgatgctgtt ttcgacctca tcgctgtttc
     7981 tgtcaccact tggttcacag gtggtggcta gccaccaagc tgcattgcaa accagctcgc
     8041 tattttttat gattccgatg tcgtttggca ttgcaaccac cattatgatc ggacaaacac
     8101 ttgggcagaa aaatgtggag ggggcgaaaa tcttaagtta ccacgcactg attaccgcaa
     8161 ccgctttagc tattattgcc gccatcatta ttattttgtt gaaaaatttt atcccttttg
     8221 cgtttaccaa caacccgatt tcgattgcga ttaccgctca tttattgatt tttgcggcgg
     8281 tttatcaaat accggatgcc attcaagcgg tagcaaacgg cattctgcgt ggttataaac
     8341 atacccaacc gattttatac gttactctgt tttgttattg gggggtgagt atgccgctgg
     8401 gctacatttt ggcaagaacc gattggattg tacaaccaat ggctgctcaa ggtttttggt
     8461 tagtcttttg tatcggctta agtttggctg gtggcttgtt attatggcaa atgcgaaaaa
     8521 tacaagcggt gccaaaagca caattaattg caaaattaga acggattaaa taacagattc
     8581 tctgctatgg aacatagcag tgctttttac ttttagaaga taactttgct gatgaaaaac
     8641 ctaaatccta tccaactacc tttgaataaa tccgttttaa tcgaagcgtc ggcaggtaca
     8701 gggaaaacct ttaccattgc caacctgtat ttgcgtttat tgctcggcat tggttgcaac
     8761 ccgttaacgg tggaacaaat tttggtggtg acatttacca aagcagcaac cgaagagttg
     8821 aaaaaccgta tccgtaaaaa tattcagcaa tgtgccgact ttttaaaaga tcaagctgat
     8881 ggtttggaag tggaaagtac aaaatcctat cgaaacaacc ttgatttttt ggcacagatt
     8941 tatccgctca ttccgaatat tcacgaagca ttgttacgtt taagtattgc cgaacgggaa
     9001 attgataccg ccagcgtgtt taccattcac ggcttttgtc aaaaaatgct ggttcagttt
     9061 gcgtttgagt cgggcgtgcg gtttgacttg gatttacagc caaaccaaag tgatctactt
     9121 aaaaaattaa gtgaagaagt ctggcgagag caattctatc cgcaagattt agccatcact
     9181 tatgcggttg ccgaacaact tggtacgccg gaatatgccc tcaatgcggt aaggcgttat
     9241 ttatctactg aattacctga accaaatgcc tctttaaatc aagatattgc cgagcatttg
     9301 gctcaatatc agcagtttat taatgaggtg aaatcctatt ggaaaacgca ttcagatgaa
     9361 ctggttgaaa ctatccgcca cgatttaaag cataaaatta cgctgcacgg aggttggtat
     9421 cgagcgacca cttttgaagc cggtgtggaa gtgatgaacc agtgggctaa ttcgcaacat
     9481 aaccatttcc cggcagggct ttatttattc actacagaga aaattgcggc tggcacgaaa
     9541 aagagctgtg agccgataga ttcccctcat cttgcaaaaa atcaggcttt tttgaccgct
     9601 tacaaggaac gttttgaaaa cagcttgtca gcaatgttgc agtatcaatt tttaattgct
     9661 ctcaaagcaa aattggcaga gtacaaacaa tcgcacccac aacgcagttt tgatgattta
     9721 ctcacaatgc taaaccaagc gttgaaaaat ctacacacgg gcgaagcctt gtctcagaaa
     9781 attcgggcga tgtatccttt tgcgatgatc gatgagttcc aagataccga tttaacccaa
     9841 tatgaaattt tcagccaaat ttttatggca gagaatgcag agaacggctt tattatgatt
     9901 ggcgacccga aacagtcgat ctataaattc cgtggggcgg atattttcac gtatttgcga
     9961 gcagcaaagc aggctgatga acaattcaca ttgggcaaaa actggcgttc gttgcctgaa
    10021 gtggtgcaag cggtcaataa tttgttttct tttgcaaatg ataactctcc gtttctttat
    10081 gaggatattg gctttcaccc agtggaggct gatagccaaa aaggtcagtt agttagtgag
    10141 caagggcatt ttgtaggcta catcacggaa aacagtaaat tagatgattt ggctgaaatg
    10201 tgtgcttatc aaattcatca acagcttgag gcgatggctc aaggcaaatt cggagttgaa
    10261 aaaaacggcg aatttcaatc ctttgctgca aaagatattg cgattttagt ccgaaaaggt
    10321 tcacaagcta agcgaatcaa aaaggcgttg gcaaaacgta atatcaaatc cgtctattta
    10381 gctgaatcag cttctgtatt tggttcggaa attgcaacag aattgtgttg gttattgcaa
    10441 gccgcactga atccgtatca ttacaaggca ttattatcgg cgttaggctc aaccttgtgg
    10501 ggcttaacgg cggcagagat ccaccgctat aaggaaaatg agcaactttg ggatctgaaa
    10561 gtcaatcagt ttgtggaata cagcaacatt tggaaagagc agggcgttct gccgatgttg
    10621 cataaaatct acttggagca gggcattatc gaacgtttga aaggtttgga aaatgcggat
    10681 cgcttgatta cggatttatt gcatttaacc gaaattttgc aggaaacctc gcaagcgtta
    10741 gagtctgaag ctgaactgtt gcggtggtat gaaaagcaag ttaattcgcc cgattttaat
    10801 gacgagcaac aacttcggtt ggaaagtgaa gaggagctaa tcaaaattgt gacgattcac
    10861 ggctcgaaag gcttgcaata tccaattgtt tggttacctt ttgtttcaca aaaaagtgag
    10921 ggagacacgc agacagcatt aagtttatat cgcaattctc aaggtgcgct ggattggtgt
    10981 ttaggctcag aagaggcaag tttttcgcta cagtatgagg cttatgcgga agatttacgt
    11041 ttgctgtatg tggcattaac ccgcgcggaa tctcagctta acttagtgtt gccgaaagag
    11101 atttccggct ggtctccact ccattacttg ttagcagacg gggaaatacc tacaggaaaa
    11161 gtgcctgttt cagattattt tagccaaaaa cggattgctg ctaatttggt tgaagtagcc
    11221 ggggaattac ctttctcact gtgggaagga gaacaatctt cagacgatta ccaagcaaaa
    11281 acctttagtg gcaatatccg tgtggttggt caaattacca gctttacttc actttatgcc
    11341 caacacgagc gttttagtga agggaaatca gaaagggtaa tggatttagc ccaagatcga
    11401 gatgtacata tagaaaccat tgaggcaggt tattcaagtg aaactgccgc tttctcgcca
    11461 ttccaattcc cacacggtat taaagtgggc acggtgttac atcacttttt tgagcattgc
    11521 caatttaacg aacaaattga tagagaggct gttgctaaag tatgcgagca attagggcta
    11581 agcgaggaat ggattgaacc aacagcatta tggtttgagc gtattctaac tacccctttg
    11641 gcagaggcaa atttctgctt aaaagcgatt gatgaaacca aacgattaaa cgagtggcaa
    11701 ttctatttac gcttaaaaaa tgataaagcc ttacatcaat taaatgcgtt attaaagcaa
    11761 catagccctt tagcaaaaac tttacctgaa ttgcaattac cgcaattaga aggttttgtg
    11821 cgaggctttg tagattgtat cgtgcaagtg gaggagaaat tctacttaat tgattacaaa
    11881 tcgaatttct taggctatct gccacaaaat tatgcgaaag aacacattca acgggaaatg
    11941 ggcagacaac gctatgattt gcaatatctg ctttacactc tcgccttaca ccgttatcta
    12001 actgcccgtt taggtgaaaa atacgattat gaacgagact tcggcggagt ggcttacttg
    12061 ttcttaaggg caatgaacgg cgaaaatgat aacggcgttt attttgacaa gccgactaag
    12121 cagttgattg aagaaatgga tcggttgttt gggtaaatat gtgtaggggc gaaaattttt
    12181 cgccccttta tgggtaatta actcgcttgc tcataccaaa tcttattgat ataaagcaac
    12241 actttaccaa gcggagtttc taccctaatt tcatcatcaa cctgtttgcc gattaaggct
    12301 cgggcgacag gggagtcaat cgaaatccag ttttttgctg ggtcgaactc atcgcaacca
    12361 acaatacggt actgttttgc ctcgccctct tcattttcta attccaccca agcgccgaaa
    12421 aagactttgc cttcttgttt agggtgataa tcaacaattt gtagcacctc tagccgctta
    12481 gataaaaaac gcacacggcg gtcgatttct ctcaaacggc gtttgccgta aatatattcg
    12541 gcattttcgc ttcgatcacc caatgcggca gcatcagaca ccgcttgagt cactttcggg
    12601 cgttcttccc gccatagaaa ttttaattcc tgatctaagg cttgccagcc tgaacgggta
    12661 atgtaatttg atttagccat agttatttaa ttgtttatgg agcaaatagt gatttgcccc
    12721 tacgaagttt ctattttgaa agcaataaat tcgctactgt tcttattccc agtccggttg
    12781 ctcctgccgc ccataaatcg ctcgccgttt tgcggaatgt ggcagaggcg tcaatatgta
    12841 gccagttttg ctggtagttt tctacaaagt aagataaaaa tgcggtggcg gtacttgccc
    12901 cagcccccac cggcacagag ccgatattgg cgatgtctgc aaaggaagaa gcaatttgcc
    12961 cacggtgaaa ttcttcaaac ggtaaacgcc agaacggttc attttccgtt ttggcagact
    13021 taaatagtgc ttcggttagg ttgtcgtcca ttgaaagcac cgagtggtag tcattgccga
    13081 ctgcgacttt tgctgctcct gtgagggttg cagcatcaat aataaattgt ggattttgct
    13141 tgcacgcatc aattaaacca tcggcaagca ctaaacgccc ttcagcatcg gtgtttaaaa
    13201 cttcaacagt tacgccattg cggtaagtga taatatcgcc taatttgaac gcattgtggc
    13261 tgaccatatt ttccgcacag cagaggtaga gtttcactcg tttattcaag cctcgagcaa
    13321 tggcaaaagc aagtgagccg gttaaaagtg ccgctccgcc catatcggtt cgcattgtgc
    13381 tcatactatc gcttggtttt agactataac cgccggtgtc aaaggtaatg cctttgccga
    13441 ccaagcaagc cagtacctgt gcgttttcat cgttggttgg gttgaagtct aatactaaga
    13501 atgcaggcgg attggcagag ccttttccaa ctgtccaaat gccgtgatag ccttgttctt
    13561 gtaatgcttc gccacgaatg atctggtaag aaaccgtatt cggttttgcc attttttgga
    13621 taaactcgac cgcttgttcg gctaattttt caggggttaa tttatctgat ggcttattaa
    13681 ttaattcacg cacgaaagtg gcacatttta cacggttatc aaattcggct tgctgttcgt
    13741 ctaagtctgg gtattgtacc gagccttgat tttttaccga atgaaatcct tgatgaaacg
    13801 cccagcagga ttctaaatcc caactatcgc cggtcagctc cacggttgaa ataccttgat
    13861 ttttaatttt gcgggcggct ttttgaatag tggctaaatc gttgttcgga ttatgtacgg
    13921 taaaccccgc atcatttgcg gaaagaatag catttttacc ccaaatttca ggggcgtttt
    13981 gagtagaaag tgaaattttc attgctgtca ttatcggttt ccttagaaaa tggattttgc
    14041 tttatcctaa caaacttttg caaagtttta tacaaaaatg accgcttgca gagcatagcc
    14101 ttgacaagcg gtcattgttt cgtgttttta caacctgatt aaggacggat tatttgccgt
    14161 cccaagcttt aattgcattg tggcggattt taacacggct ttcagcattg cctttgtagt
    14221 aatctttatc taaaccgcct tcccagtcgc catagttcgg gttcggtaac ataatgaatt
    14281 ttttaccgaa ttgttggctg ttttcggcta cgaatgcacg gcgttccgcg tttgatttac
    14341 ggtaagtcgc atcgccgaaa tcgtttaagt tgtcgccaat atagagcacg atttcatagc
    14401 cttgtttttc gatttcttca aagcgagggg ttttgttcga tttgtctttt ttcaacaaga
    14461 gtgtttgttc gctcacacca ctaaagccta atttgttcat atcatcaata gtaccggctt
    14521 tttcactgct gtctttacgg tttgaaacat agaacatagt tcctttgtgg ctattaacgt
    14581 agttgttaaa ttccactgca ccggcaatcg ctccggtttg gcgggcattt acccaacgag
    14641 tccagctttc accatcaaac ggcttgtggt ttttaacctg ccagccggca taaaggctgt
    14701 tgtccaccat agtttcatct aaatctacta ccacggcttt tttcttgcct tttttcactt
    14761 tggcttggtc gaatgccact ttcgctgcat tgaatgcttg atgggcaaga gcttggtatt
    14821 cgccggattg ttgcatccag tttatcccta atgtagcttg ctcttgcaac accatttgat
    14881 gatgctcatc gctgttttta tgcgtgtgcg aacaagcagt taatacaaat aaagctgtga
    14941 ggctcatagc agaaagtttg atgtttttca tacgtatatc cttagtttta ttgttgataa
    15001 acagagcgat tatacctaaa aagagttgct tatggctaat agtttattgc tcctattcac
    15061 ttttaaagca aactaaggta gcctagtaac ctttttataa caattacaca gaggctatat
    15121 gcaaacatta ttaaaattta cacaatttat cagcaaaacc ttcgccattt gggtggtgtt
    15181 ttttgctttt atcgcagcac aatttccgga aacctttaag caattcctgc cttggattcc
    15241 ttatctgtta gggattgtga tgttgggaat ggggttaacc ttaactttca aagattttgc
    15301 cgaggtaacg aaaaatccga aatcagtgat tatcggcgtg atcgctcaat tcgtggtatg
    15361 ccgagtgtag cttatggatt ggcaaaagca tttaacttac ccgcagattt agccattggt
    15421 gtgattttag ttggttgttg cccgggcggt acttcttcaa acgtgatgac ctatttggct
    15481 cgtggcaaca cagcgttatc ggtagcttgt accactattt caactttact tgccccagtg
    15541 ctcacgccgg caattttcta tttatttgcc agccaatggt tagaaattaa tgcaacggca
    15601 atgtttattt cggtgttgca aatggtgcta ttgccaattt ttgtgggcgt ggtgattcgt
    15661 actattttca aacaaaaagt agagcaattt agccaaacaa tgccattaat ttcagtgatt
    15721 gcaatcgtat taattgtcac ggcggtggtg tcagttagcc gagatcgtat tattgaatcc
    15781 ggtttattaa tttttgcggt agtagcatta cacaacggtt taggttattt aatcggttat
    15841 ttggcgagcc gtttattaaa attaccgatt gcagacagca aagcggtggc gattgaagtg
    15901 gggatgcaaa actcaggatt gggggcagca cttgccgcat tacactttaa agccaaccct
    15961 atcattgcgg tgccaagtgc ggtatttagc ttctggcaca atatttcagg cccgattttg
    16021 gcgatgattt tcgctaaaat gaaaaacgat aacgaaaaat aaaattcgtt ttaatacaga
    16081 cgttttaatg ttttaataaa gaatagacaa acggttaaat ttttctaatt ttttgcaaaa
    16141 tgttcagaaa atttaaccgc ttgttgttta gaatttagaa cattcttggt ccacgtgcag
    16201 tgctgatttt ttcatcatcc gctctttggg taacaatcac ttgatcaccc tcatttaagc
    16261 ctgctaatac ttcggtattt tgcgtatccg aaatgccaat ttggattttt ctttcaaccg
    16321 actgctcatt ttccagcacc aacacataat tctctttacc acgttttttg attacgctgg
    16381 tgggtacaac taaaacctgt tcccgtttat caatagtaat ttgggcttga gtagtcattc
    16441 cgatgcgtaa actgttatcg gcattatcaa cggaaacatt agcgtagtaa taaaccgctt
    16501 cggtattacc cgattgttcg gtgtagttat tatcggtcag cgtggtgagt gccggatcaa
    16561 ctgaatcaat ggtagcacta tattctcgat ttggctcagc aagggtggaa aacttaactt
    16621 tttgcccgac tttaacctgt gcaatatcgc cctccgaaat ttcaagttta atcagcatct
    16681 tagataaatc tgctacctgt acaatagttg gcgaagtttg attggaattg accgtttgcc
    16741 cgacagaaac cggtacagac acaatcacgc cgtccattgg cgagataatt tgcgtataag
    16801 ttaagttggt tttagcatcg tttaccgaaa tttcagccga ttttaattgt gctttaatgt
    16861 tatccaccgt ggctttggct gaagctaagg tatttttagc cgtttcaaga tcgtttaaag
    16921 aggcactatt tgcccgatag agtttattta agcggttgta gttcgattga gctacttcaa
    16981 gtgcaacctg tgcagaggtg agctgtgctt tataagaaga aagccgggct tgagcggtgc
    17041 ttaaggtgtt gctctggttg ctggaatcaa tatctgcaat taaatctcct tgcttcaccg
    17101 attgcccgag ctcgacatag agtttttgga ttttgcccga aacttgagcc cccacttcgg
    17161 tgcgtttatt cgctcgaacc gaaccggttg ccagcacatt tttgttaatt tctgcccgtg
    17221 tgacagcttg ggtaatgtaa tggatttgcg gtttattggt ttgttgctga taataaaaat
    17281 agccgcctat tccgagagcg gcaattagca caagagtggc taatgtttta cgtttcatac
    17341 tgttccttga tgatatacaa gcggtcaaat ttagacaaaa atttgcaaaa aagttgctct
    17401 caactaaaca atgccaaatg tggctcgaag atagcttgcc accgcttcat ctttgttaaa
    17461 gccaatcact tcattattcg gtaatacggc ttttaaacgt ggatcggcat tacccattaa
    17521 acaacctttg ccggctaaac ttagcatttc cacatcattc ataccgtcac caaaagcgat
    17581 acaatcggct aaggtgtagc cccgtaattt gaccaattcg gcgagagcat tggctttaca
    17641 cactcctttt gccatcactt caaggcaaag tagggcagag taggtcattt gcacacggtc
    17701 gccataggta tcccgaatat aatgttcaat cggtactaaa gcttcagcag ttttgccgat
    17761 aaaaaacact ttctcggtat ttcgaccgtg atgatgagca aaatttacta cttgatagct
    17821 aaatcctgaa tcttgatgga atttttttaa ctctgcaatc tctttattga taaaccattc
    17881 atcgccttga tagctgttta agcacacatt ttggtcgtca aattcaatgt tcattaattc
    17941 aaaggcaaga tcttccggta aataatggtt gagaattttt ttaccctcta aattgttggc
    18001 tcttgccccg tttgaagtga ctaacattgc atttttaacg tttactttcc caataatctg
    18061 agacacatct ggatgattgc gaccggtggc gaaaaaaata tcaacacctt tttttgatag
    18121 ttgttctaat gtatcaatag tgaaatcacc aattttatga ttggcattta atagtgtgcc
    18181 atcaagatcg gaaataattg cacgaaatgg gagagtcata
//
LOCUS       DANLVT010000043        17965 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.043, whole genome shotgun sequence.
ACCESSION   DANLVT010000043 DANLVT010000000
VERSION     DANLVT010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17965)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17965)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17965
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.043"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            82..1173
                     /gene="ulaG"
                     /locus_tag="PXC99_001231"
     CDS             82..1173
                     /gene="ulaG"
                     /locus_tag="PXC99_001231"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001863918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ascorbate 6-phosphate lactonase"
                     /protein_id="HDL5417689.1"
                     /translation="MSKIQEITRESWILSTFPEWGTWLNEEIEEEVVPEGNFAMWWLG
                     CVGVWIKTPAGANICMDLWCGRGKSTKKVKDMVRGHQMANMAGVRKLQPNLRAQPMVL
                     DPFAINEVDFILASHYHSDHIDVNVAAAICNNPKLDHVKFVGPWHCAELWKKWGVPEE
                     RIIVVKPGDVVKLKDVEIHALDSFDRTCLVTLPVEGAEERGGELAGLCPSDEEMGRKA
                     VNYVFKTPGGTIYHGADSHYSIQFAKHGKQFDIDVALNNYGENPVGIADKMTSVDLLR
                     MAECLRCKVIIPVHHDIWTNFMASTQEIIDLWRMRKDRLQYQFHPFIWEVGGKYVYPR
                     DKDLIEYHHPRGFDDCFEQEPNIQFKSML"
     gene            1257..2003
                     /gene="ulaR"
                     /locus_tag="PXC99_001232"
     CDS             1257..2003
                     /gene="ulaR"
                     /locus_tag="PXC99_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator UlaR"
                     /protein_id="HDL5417690.1"
                     /translation="MNESYRHKELLALLEERKALSTADIMQLLNISPATARRDISKLD
                     GQGKLKKVRNGAEAILAPTFLQHTKITNNAQEKRRIAEAAGRLCKDGESLILTCGSTM
                     EMLGEVLCGRKLQIITNYLPLANQLIAGCHDDVVIMGGQYNKHKKVMLSINTQNEMTY
                     AATTMFTSGKGLTSEGLFKTDMIIANAEQQMAKHAERYVVLLDSTKLGKKVGMLFKEF
                     DKIDLLITGKEADPTIIQALRNKGLDIILA"
     gene            2058..2918
                     /locus_tag="PXC99_001233"
     CDS             2058..2918
                     /locus_tag="PXC99_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 3-epimerase"
                     /protein_id="HDL5417691.1"
                     /translation="MRKHKLGIYEKALPKNISWQDRLSIAKVCGFDFVEMSIDETDER
                     LARLDWSKKERAKLVKTIINTGVTIPSMCLSGHRRFPFGSCDEATRQKAYEIMEKAIQ
                     LAVDLGIRTIQLAGYDVYYEEQDEGTIQRFQQGLEWAVELAASNQVTIAVEIMDTQFM
                     SSISRWKKWDEIIKSPWFTVYPDLGNLSAWNDNVAEELKLGIDKISAIHLKDTYKVTE
                     TCKGQFRDVPFGDGCVDFAACFKTLAELNYRGAFLIEMWTEKAEEPITEIINARRWIE
                     QKMQEGGFTL"
     gene            2915..3634
                     /locus_tag="PXC99_001234"
     CDS             2915..3634
                     /locus_tag="PXC99_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="HDL5417692.1"
                     /translation="MTQLTELTPALQALRERVLKANLELPKYGLVTFTWGNVSEIDRE
                     TGLVAIKPSGVEYDAMTVEDIVLVDLQGNRVYGDKKPSSDTETHLELYRQFTDIGGVV
                     HTHSRNAVGWAQAGRDLLALGTTQGDYFYGAIPCTRKMTAEEIAGSYELETGKVIVET
                     FRTRGIEPKAVPGVLVHSHGPFTWGKDGHDAVHNSVVLEEVAYMNFISHQIRPQIGPM
                     QQELLDKHYLRKHGANAYYGQ"
     gene            3882..6332
                     /locus_tag="PXC99_001235"
     CDS             3882..6332
                     /locus_tag="PXC99_001235"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012311.1,HMM:TIGR02601.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HDL5417693.1"
                     /translation="MKNRNYFVAIATILALSPEVNATELSDQLASRTRYYPSATDSYY
                     SYYKYAPIYSGYYTSNSRNGYSSWYYPGSNAGVTTRTVSTTVNGITVTKVYTTHNGRT
                     TVRTTYAPAVNKPIVNKPTPIANKPVVDTPTQPVIDANPIMDPPVQPIVDNKPITDTQ
                     PNPITDNKPVIESPIDDTRPVIIRPTTPVNLHPEPVAVGVPNVGIRWNDRSRGYNIDD
                     PNNKQNVKLTGEGVKVGILDSGFKNYLMQDDILKKFGNRAVIIETGRTAPASATHGIE
                     VAEMVGGGNSRNGVASKSTLLLADITKTTNAGTGLSATAPIYYDLWNRGARIFNQSYG
                     IPKPLTYFNNNRNSSYYYLHQFDGNVLQFYKDKVKEGGLFVWAAGNNRGDLDPSLQAG
                     LPHYEADLEKGWISVVAVATRTNQGLGNFEWSNLLPYSQAGVAKNWTVTAMGDYIFNL
                     GGRNIIASGSSFAAPAVTGTAALVKQKYPWMDGNLIKQSILSTATDIGAPGVDDVYGW
                     GLLNIEKATNGPARFGKRLALADNVTVNIPNGSYEFSNNINGDAGLVKNGQGELILSG
                     ASTFEGDTTLNEGAVTINGKKYVSKVNVSPSGTLVVNNTTLENGVNNEGTVVNQGYST
                     IKRAYVASAQSTLVSDLGSNLNVKGEVDLNGSTLSLAAVKEGKAQYVTQKGLSMSAIT
                     SDSAIKGNFAAIETSGLLTATAEKTNENEVKATVSRKNVATALESSFSALDNQIEGNN
                     GSTNATNDEFAQQAATLQNSIANINTQSVVLDSLSGQIYASAQALTFENSETVNKDLS
                     NRLVMLGTLDNVGETAGV"
     gene            6342..7157
                     /locus_tag="PXC99_001236"
     CDS             6342..7157
                     /locus_tag="PXC99_001236"
                     /inference="COORDINATES: protein motif:HMM:TIGR01414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL5417694.1"
                     /translation="MYGNGTLKEIGFGEGKTNTYAGQIGFDKPVTDHVILGAALNYSK
                     AKVNFDRYGGSSKADGIGASLYARIGNKHKTPWYLQGRAGYGSVDSDVERHIILADNN
                     ASTAKINHRDRVFSAYVESGYDFKQGRFALTPFVGFSHDVVRRGAFSEQNSQFGLTAD
                     KATYKQTSGLIGLRTSLEVNLAGMKTTFQGYVNHQKAFNREDLSFKASYTGLQDAKFD
                     VKGIGLAKHKTWVGIGALAEVNKNTSLYVNYDLKLAKNSGHNNVVTAGIRINF"
     gene            complement(7244..8104)
                     /gene="pdxY"
                     /locus_tag="PXC99_001237"
     CDS             complement(7244..8104)
                     /gene="pdxY"
                     /locus_tag="PXC99_001237"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal kinase PdxY"
                     /protein_id="HDL5417695.1"
                     /translation="MKNILSIQSHVVYGYAGNKASTFPMQLLGVDVWALNTVQFSNHT
                     QYGKWGGMVMPKEQIGSIVDGIHNIGELHRCDAVLSGYIGSAEQVAEIIQAFHKVKAE
                     NPNAIYVCDPVMGHPDKGCIVADGVKEGLINLAMAQADIITPNLVELRELTGLTVENF
                     EQAVEAVKVILTKGPKKVLVKHLSRVGKESNKFEMLFANQDGIWHISRPLYQFAKEPV
                     GVGDLTAGLFVANLLNGKSDLEAFEHTANAVNEVMEQTARSGLYELQIIASRDRIVNP
                     QCSYQAVKIA"
     gene            8223..8298
                     /locus_tag="PXC99_001238"
     tRNA            8223..8298
                     /locus_tag="PXC99_001238"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8256..8258,aa:Thr,seq:tgt)
     gene            complement(8393..9346)
                     /gene="accA"
                     /locus_tag="PXC99_001239"
     CDS             complement(8393..9346)
                     /gene="accA"
                     /locus_tag="PXC99_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HDL5417696.1"
                     /translation="MSQEFLDFELPIAELEAKIESLRAVSEQDDKINLDDEIKRLQKK
                     SEELTKKTFANLDAWQISRMARHPNRPYTLDYIEHIFTEFDELAGDRAFADDKAIVGG
                     IARLDGRPVMVIGHQKGRTVKEKVKRNFGMPAPEGYRKALRLMEMAERFNMPIITFID
                     TPGAYPGIGAEERGQSEAIARNLREMSQLSVPVICTVIGEGGSGGALAIGVGDKVNML
                     QYSTYSVISPEGCASILWKSADKASTAAEVMGLTAPRLKELELIDNIVPEPLGGAHRN
                     VEQIAQNLKQRIVEDLAGLDQLNKEDLLERRYQRLMNYGYV"
     gene            complement(9400..10824)
                     /locus_tag="PXC99_001240"
     CDS             complement(9400..10824)
                     /locus_tag="PXC99_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HDL5417697.1"
                     /translation="MKKQITRRQFLQGSALAAGFATVPTPLLAAERPQLNIPPLMDIG
                     RGKPVRLDLRPAQTQFDKGKLVDVWGVNGQYLAPTVRVKSGDFVKLTYLNNLPQKISM
                     NIQGLQASSEMIGTVHRSLDPKSSWSPIVSINQPACTCWYHADTMLNSAFQVYRGLAG
                     LWMIEDEQSKKATLPNKYGVNDIPLILQDQLLNKDGVQVLDKNTSQFFGKRLFVNGQE
                     SPYFNVPRGWVRLRIVNASLSRAYELRLDNEQPLYLIATGLGMLAEPLETESVQLAPS
                     ERVEVLVDLSEGKAVSLISGQKRDIFYKIGQVFADNDELNDNVILELRPEGMAAVLNN
                     KPSLPAFNLEEFNLKISQERRFAIRPADYLINQKRFDPKRIDFTAQKGSVERWYLHST
                     QAVGFTLQGAKFIIETLNRKQYPIKQLAWRDTVWLEAEQEITLLVRFDNTAPEQLPFT
                     FGVSDFMLRDRGTMGQFSVIENGQ"
     gene            complement(10826..11560)
                     /locus_tag="PXC99_001241"
     CDS             complement(10826..11560)
                     /locus_tag="PXC99_001241"
                     /EC_number="2.3.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acylglycerol-3-phosphate O-acyltransferase"
                     /protein_id="HDL5417698.1"
                     /translation="MLKIFRILIVALAAIFISIFGTIYALLRLRHPSSVGVVARWFGA
                     LHKLVGLELITRKKPEINYPVVYIGNHQNNYDMVTISSMVAEKTVSIGKKSLIWIPFF
                     GLVYWATGNIFIHREKRSSAIETMNKAGQIVKERNVSVWMFPEGTRSRGRGLLPFKTG
                     AFHLAISAGVPIVPVVCSNLHNKVDLNRSNNGTVICEMLDPIDTSGYSRENVKELMEK
                     CHQIMLAKFEQLNQEVEQLENTAKNA"
     gene            11707..12204
                     /gene="tpx"
                     /locus_tag="PXC99_001242"
     CDS             11707..12204
                     /gene="tpx"
                     /locus_tag="PXC99_001242"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005578656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HDL5417699.1"
                     /translation="MSKVTLAGSPIDVAGTFPQKGDVVADFTLVNSDLSDVSLSDFDG
                     KRKVLNIFPSIDTGICATSVRVFNQKAADVANTVVLCISADLPFAQARFCGAEGIENA
                     KVLSSFRHRDLHNKLGVDIISGPLAGLTSRSVIVLDENNKVLHSELVPEIKQEPDYEA
                     ALAVL"
     gene            complement(12289..13914)
                     /gene="yidC"
                     /locus_tag="PXC99_001243"
     CDS             complement(12289..13914)
                     /gene="yidC"
                     /locus_tag="PXC99_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HDL5417700.1"
                     /translation="MNNRGLLLMGLFLVSILIFTQWQQDFDPEIQAQKQAQVAAQTQQ
                     AGDLPSASNANNPIADSITQGKTITVESDVLRLTIDTLGGDVIGSDLLKHNAELHSNT
                     PFKLLQQDGDKIYVAQSGLVGKNGIDTNAGRPQYAVTADSFKLAEGQNEISVPLTFEK
                     EGVVYTKTFTLKRGSYDVGVNFNIKNNTAQAIEVQPYGQLKHSIVESSGNLTMPTYTG
                     GAYSSSETNYKKYSFQDMEKANLSVDTKAGWIAVLQHYFVSAWVPNQDADNSLYSRTN
                     NGVATIGYRGPLTTIAPNSEANLNSKLWTGSKDQKEMGESANHLDLTVDYGWAWFIAK
                     PLFWLLTAIQKIVSNWGLAIIGVTIVVKTILYPLTKAQYTSMAKMRMLQPRITEMRER
                     FGDDRQRMSQEMMKLYREEKVNPMGGCLPILIQMPIFIALYWTFMEAVELRHAPFFGW
                     IQDLSAQDPYYILPLLMGGSMFLLQKMSPTPVADPVQQKVMTFMPVIFTVFFLWFPSG
                     LVLYWLTSNLITIAQQWLIYRNLEKKGLHSRKK"
     gene            complement(14067..14492)
                     /locus_tag="PXC99_001244"
     CDS             complement(14067..14492)
                     /locus_tag="PXC99_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hotdog fold thioesterase"
                     /protein_id="HDL5417701.1"
                     /translation="MTIWKQTATCEQLNTLSQKSAVSHLGIEFTAIGEDWIEAQLQVD
                     ERTQQPFGVLHGGVSAALAETTANAGALMVCEPHQIAVGMELNISHLKSIPAGTKAIA
                     KATPLKLGREVQVWNIDIKDEQGNLCAVARLSTKTLDKR"
     gene            complement(14821..17913)
                     /locus_tag="PXC99_001245"
     CDS             complement(14821..17913)
                     /locus_tag="PXC99_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HDL5417702.1"
                     /translation="MIPRLSEVPQLDKATQSYLTELVNQHFSGEIASNYADRLSLATD
                     NSVYQQIPQAILFPKSVSDVVILTKLAQKPEYQHLTFTPRGGGTGTNGQSLNNNIIVD
                     LSRHMNQILELNVEERWVRVQAGVVKDQLNQFLKPHGLFFSPELSTSNRATLGGMINT
                     DASGQGSLQYGKTSDHILAIKSVLINGDILETQAVKSADFFAHIEGLNLSALGKTLHR
                     EIFNRCKTLRPKVLNELPQLNRFITGYDLKNVFNHGESEFNLTRILTGSEGSLAFICE
                     AKLNLLPIPKYRTLINIKYNSFDAALRSAPFMLEAKALSVETVDSKVLNLAKQDIVWH
                     SVSDLLTEDPANPILGINIVEYASSDQTQIETQVKALCQSLDQKMANNEAGIIGYQLT
                     SDVNSIEKIYAMRKKAVGLLGNAKGWAKPIAFVEDTAVPPENLADYIVEFRALLDRYN
                     LPYGMFGHVDAGVLHVRPALDLCDKAQVETFKQISDQVVELTAKYGGLIWGEHGKGMR
                     SYYGERFFGETLWQELRYIKTLFDPYNRLNPGKICTPLESETSLYPIDSQMRADFDRQ
                     IPIQVREEFKGAMNCNGNGLCFNFDVHSTMCPSMKVSGNRLYSPKGRATLVREWLRLL
                     TEQNVSPDDLIFKPRKQAVKLADFVAKIRNTLNKNKEYDFSHEVKAAMDTCLACKACA
                     SQCPIKIDVPTFRSQFNELYHSRYLRPLKDYVVSNLEFIAPLMAKQPRFFNFFSTSTF
                     AEKAANKTIGMTYLPALSVPNLQHQLVEVGYQGESLESLEQQATSGDFSAKNCKTLFI
                     VQDPFTSYYDAKVVADFIALIKKLGFKPIVLPFKPSGKAQHVKGFLHKFAKTAKNQAD
                     FLNRVAKLGLPMVAVDPALTLLYREEYKEILKEARGDFKVLLAHEWLREVIKNGELEN
                     CKKSANSDRLPWYLFAHCTESTALPSSMKEWQAIFTHFGETLLNENVGCCGMAGTFGH
                     ETKHVEMSKAIYQQSWQIKLKNKPLERCLATGYSCRSQVKRFEQQGIKHPIQALLDVI
                     "
BASE COUNT         5115 a         3637 c         3931 g         5282 t
ORIGIN      
        1 aaagatgtac aaatttttgt gattgtttat gattggtttt gattgcattg ttcttatttt
       61 agcgtaaatc aggagactat tatgagcaaa attcaagaaa tcactcgtga aagctggatc
      121 ctttcaactt tccctgaatg gggtacttgg ttgaatgaag aaattgaaga agaagttgta
      181 ccggaaggca attttgcaat gtggtggcta ggctgtgtcg gtgtgtggat taaaacccca
      241 gctggtgcga atatctgtat ggatttatgg tgcggtcgtg gtaaatccac caagaaagta
      301 aaagatatgg tgcgtggtca tcaaatggca aatatggcag gggtgcgtaa gctccagcct
      361 aatttgcggg ctcaaccgat ggtgttagat ccgtttgcga ttaacgaagt ggacttcatt
      421 ctcgcttctc actatcactc agaccatatt gatgtaaacg tggcagcggc tatttgcaat
      481 aacccgaaat tagaccacgt taaatttgtc ggcccttggc actgtgcaga attatggaaa
      541 aaatggggcg tgccggaaga acgtattatt gtggtaaaac cgggcgatgt cgtgaaatta
      601 aaagatgtag aaattcacgc cctagattca tttgaccgta cctgtttagt gaccttaccg
      661 gtagaaggtg cagaagaacg tggcggagaa cttgcaggct tatgcccatc agatgaagaa
      721 atgggacgca aagcggtgaa ctatgtgttc aaaaccccgg gcggtacgat ttatcacggt
      781 gcagattctc actactcaat ccaattcgct aaacacggta agcaatttga tattgacgta
      841 gcgctgaata actatggcga aaacccggtt ggtattgcgg ataaaatgac ttcagttgat
      901 ttattacgta tggcggagtg tttacgctgt aaagtgatta ttccggttca ccatgatatt
      961 tggacaaact ttatggcaag tacgcaagaa attattgatt tatggcgtat gcgtaaagat
     1021 cgcttacaat accaattcca cccatttatt tgggaagtgg gcggcaaata tgtttaccca
     1081 cgtgataaag acttaattga atatcatcac cctcgcggct ttgatgactg cttcgagcaa
     1141 gagccaaata ttcaatttaa atccatgcta taggtgagca gtcgccactc tcactggaga
     1201 gtggcgtttt agcaagttca ttatggagca gtagtgatta gtaatgggat aaagtagtga
     1261 acgaaagtta tagacacaaa gagttattag ccctgttgga agagcggaaa gcactgtcaa
     1321 cagcagatat tatgcagctg ttaaatattt ctccggcaac agcaagacgt gatatcagta
     1381 aattagatgg tcaaggtaaa ttaaaaaagg ttagaaacgg agcagaagca attctggctc
     1441 ctacattttt acagcacaca aaaataacta acaatgcgca ggagaaacgt agaatagcgg
     1501 aagctgccgg tcgtttatgt aaagatgggg aaagtcttat tctgacgtgt ggttccacaa
     1561 tggaaatgct cggtgaagta ttatgtggta gaaaattgca aattattacc aattatctac
     1621 cgcttgcaaa ccagttgatt gcaggttgcc acgatgatgt agtgattatg ggtgggcaat
     1681 ataataaaca taaaaaagtg atgctctcaa ttaacaccca aaatgagatg acttatgccg
     1741 ctaccacaat gtttaccagt ggcaaaggct taaccagcga aggattattt aaaaccgata
     1801 tgattattgc caatgccgag caacaaatgg caaagcacgc agaacgttat gtggtgttat
     1861 tggatagcac caagctcggc aaaaaagtcg gtatgctgtt taaagagttc gataaaattg
     1921 atttattgat taccggcaaa gaggcggatc cgactattat ccaagcatta agaaacaaag
     1981 gcctggatat tatcttggct tagcctgtag cggtcaaatt taatcaaaat tttacttatc
     2041 atcttcaagg gaaaactatg agaaaacata aactgggtat ttacgaaaag gccttgccga
     2101 aaaacatttc gtggcaagac cgcctttcta tcgccaaagt ctgcggtttt gactttgtgg
     2161 aaatgtcgat tgacgaaacg gacgaacgct tagcccgcct tgattggagc aaaaaagaac
     2221 gtgccaagct ggtgaaaacc atcatcaaca ccggcgtgac cattccgtca atgtgcttgt
     2281 ccggtcatcg ccgtttcccg tttggttctt gtgatgaagc gacccgccaa aaagcctatg
     2341 aaattatgga aaaagccatt caactggcgg tcgatctcgg tattcgcacc attcagcttg
     2401 ccggctatga cgtctattac gaagagcagg acgaaggcac aatccaacgc ttccaacaag
     2461 gcttagaatg ggcggtggag ctggcggcaa gcaaccaagt taccattgcg gtggaaatta
     2521 tggacaccca atttatgagt tcgatttccc gctggaaaaa atgggacgag atcatcaaat
     2581 caccgtggtt caccgtgtat ccagatttag gcaacctctc agcgtggaac gacaacgtag
     2641 cggaagagct gaaactcggc atcgacaaaa tctctgccat tcacttaaaa gacacttaca
     2701 aagtgactga aacctgcaaa gggcagttcc gtgatgtgcc atttggtgac ggttgcgtag
     2761 atttcgccgc ttgttttaaa acccttgccg agctgaatta ccgtggcgca ttcttaattg
     2821 aaatgtggac ggaaaaagcc gaagagccga ttactgaaat catcaacgcc cgccgttgga
     2881 tcgaacaaaa aatgcaagaa ggaggattta ccctatgacg caattaactg aattaacccc
     2941 tgcattacaa gccttaagag agcgtgtgtt aaaagccaat ttagaattac cgaagtatgg
     3001 cttggtaact ttcacttggg gtaacgtaag tgaaatcgac cgtgagaccg gtttagtcgc
     3061 catcaaacct tccggcgtag aatacgatgc gatgacggtg gaagacattg tattggttga
     3121 tttacaaggt aatcgagttt acggagataa aaaaccgtct tctgatacag aaacgcactt
     3181 agaactttat cgccaattca ctgatattgg cggtgtggta cacactcact ctcgcaatgc
     3241 tgtaggttgg gcacaagcag ggcgtgattt attggcactt ggcaccactc aaggcgatta
     3301 tttctacggt gcgattcctt gtactcgcaa aatgaccgca gaggaaattg ccggcagtta
     3361 tgagctggaa accggaaagg tgattgtcga aactttccga actcgaggta ttgaaccgaa
     3421 agcagttcca ggtgtgttgg tacattcaca cggtccattt acctggggaa aagatggaca
     3481 cgatgctgtg cataattctg tggtattaga agaggtggct tacatgaatt ttattagcca
     3541 tcaaattcgc ccacaaattg gcccaatgca acaggaatta ttagataagc attatctgcg
     3601 taagcatggt gcaaatgctt attatgggca atagctaata acctaaaaat tattttccaa
     3661 attatcaaca gctttcgagg ggctttctat aatcggaata gctcctcagt ctgtttgagt
     3721 ttatggatag atccacaaat aattaccatt ttccttttct tgattttaat tttgattttt
     3781 gttctaatct ctgcctcttg tttttacaag tctattaagg atccgtagta gatttgaaat
     3841 aaacaagagt atctttgtat ttattagaag gaaaccaaaa ggtgaaaaat agaaattatt
     3901 ttgttgcaat agcaacaata ttagccttat cgccagaggt taacgcaact gaactttcag
     3961 atcagcttgc aagtagaaca agatattatc cttccgccac ggatagttat tatagttact
     4021 ataaatatgc accgatttat tcgggctact atacatcgaa tagccgtaat ggttattcgt
     4081 cgtggtatta tccaggtagc aatgcaggtg taacaaccag aactgtttcg acaacagtta
     4141 atggcattac agttacaaaa gtttatacaa cgcataatgg gagaacaacc gttcgtacca
     4201 cttatgctcc tgctgtgaac aaaccaattg taaataaacc gacaccgatt gccaataaac
     4261 ccgttgtaga tacgccaact caaccggtta ttgatgccaa cccaattatg gatccgccag
     4321 tccaaccaat agttgataat aaacccatca ctgatacaca gcctaatcca attacagata
     4381 acaaacctgt cattgaatcg ccaattgatg acacccgtcc agttatcatt aggcctacaa
     4441 caccggtaaa tcttcatcct gaacctgtag ctgttggtgt acccaatgta ggtattcgat
     4501 ggaatgaccg ctctcgtggt tacaacattg atgatcctaa taacaaacaa aatgttaagt
     4561 taactggtga aggtgttaaa gtcggtatct tagatagtgg ttttaaaaac tatttaatgc
     4621 aggacgatat actcaaaaaa tttggtaatc gcgctgttat tattgaaaca gggcgtactg
     4681 ccccggcttc tgcaacacat ggtattgagg tcgcagaaat ggttggggga gggaactctc
     4741 gcaatggagt agcgtctaag tcaacgttat tacttgcgga tattaccaaa acaacaaatg
     4801 cgggtacagg attatccgca acagctccaa tttattatga cttatggaat aggggagccc
     4861 gtatttttaa ccaatcatac ggtattccaa agcctcttac ttattttaat aacaatagaa
     4921 attctagcta ttactattta caccaatttg atggtaatgt gttgcaattc tataaggata
     4981 aagtaaaaga ggggggctta tttgtctggg ctgcggggaa taaccgtggt gatcttgatc
     5041 catcactcca agctgggtta cctcattatg aagctgactt ggaaaaaggt tggatttctg
     5101 ttgttgcggt agcaaccaga actaatcagg gattgggtaa ctttgaatgg agcaatttat
     5161 tgccatattc tcaagccggt gtggcaaaaa attggaccgt taccgcaatg ggtgactaca
     5221 tctttaattt aggaggtaga aacattattg ctagtggttc atcctttgca gctccagccg
     5281 ttacgggtac agcagctctc gtgaaacaaa aatatccttg gatggatggt aaccttatca
     5341 aacaatctat tctctcgacg gcaaccgata tcggcgctcc tggagttgat gatgtatatg
     5401 gatggggttt acttaatatt gaaaaagcca ctaatggccc tgcgcgtttt ggtaaacgac
     5461 tcgctttagc cgataacgtg actgtaaata ttccaaatgg aagctatgag ttttccaata
     5521 atattaacgg tgatgcaggc ttggtgaaaa atggccaagg cgaattaatt ttatcgggtg
     5581 ctagtacttt tgaaggggat acaacactca atgaaggtgc tgtcactatt aacggtaaaa
     5641 aatatgtgtc taaagtaaac gtatctccaa gtggtacatt ggttgtcaat aataccacgt
     5701 tagaaaatgg cgtaaataac gagggtacag ttgtcaacca gggttattct acgattaaga
     5761 gagcttacgt tgcttcagca caaagtacgc tagtgtcaga tttaggttca aacttaaatg
     5821 taaaaggaga agttgactta aacggctcta ctttatcact agctgcggta aaagagggta
     5881 aagctcagta tgtgacccaa aaaggtttat caatgagtgc tattacttct gattccgcaa
     5941 ttaagggtaa ctttgctgca atagaaacct cagggttatt aactgcgacg gcggaaaaaa
     6001 ccaatgagaa tgaagtaaaa gcaacagtta gccggaaaaa tgtcgcgact gctttagaga
     6061 gctcattttc ggcattggat aaccaaattg aaggaaataa tggttctaca aatgctacaa
     6121 atgatgaatt cgcacaacaa gcggctactt tacaaaacag tattgcaaac atcaatacgc
     6181 aaagtgtggt tttagatagc ttatctggtc aaatttatgc gtctgcgcaa gcgcttactt
     6241 ttgaaaactc agaaacagtg aataaagatc tctctaaccg tcttgtaatg ttaggaacgc
     6301 tggataatgt aggtgagact gctggtgtgt gagtaacggg tatttatggg aatggtactc
     6361 taaaagaaat agggtttggt gaaggtaaaa ccaataccta tgctggccaa ataggttttg
     6421 ataagccagt tacagaccat gtgattttag gtgcggcact taattattct aaagcaaaag
     6481 tgaacttcga tcgttatggc ggtagttcaa aagcagatgg aataggtgca tcattatatg
     6541 cccgtatagg caataagcat aaaacacctt ggtatttaca aggtcgagcc ggttatggca
     6601 gtgttgattc agatgtagag cgtcatatta ttttggcgga taataacgca agtacagcaa
     6661 aaatcaacca ccgagacaga gtattttctg cttatgttga atcaggctat gacttcaagc
     6721 aaggtcgctt tgcgttaact ccatttgtcg gttttagtca tgatgttgtc agacgtggcg
     6781 cattcagtga gcaaaacagt caatttggtc tcaccgcgga caaagcaacc tataaacaaa
     6841 caagcggatt gattggttta cgaacatctt tagaggtgaa tttagctggg atgaaaacga
     6901 ctttccaagg ctatgtaaat catcaaaaag cgtttaatcg agaagatctt agctttaaag
     6961 caagttatac aggtttacaa gatgcaaaat tcgacgtaaa aggtattggg cttgcaaaac
     7021 ataaaacgtg ggtagggatt ggtgcattgg cggaagtaaa taaaaatact tccttatatg
     7081 tgaattacga ccttaaactc gcaaaaaata gtggtcacaa caacgttgtg actgctggga
     7141 ttagaattaa tttctaactg aatcttttta aacaaaacgg gcgtttatac gcccgttttt
     7201 ttatagttat agagataata atgttatttt atacttcatt taattaggca atctttacag
     7261 cttggtaact acactgtgga ttaacaatcc gatcacgaga agcaataatt tgtaactcat
     7321 aaagccctga tctagcggtt tgttccatta cctcattgac cgcatttgca gtgtgttcaa
     7381 aggcttctag atcggatttt ccatttaata agttcgccac aaatagccct gcggttaaat
     7441 cgcctacacc gacaggttct ttggcaaatt ggtagagtgg gcggctgatg tgccaaatgc
     7501 catcttggtt ggcgaacagc atttcaaatt tgttgctctc tttgccgact cggcttaaat
     7561 gtttaaccaa tacttttttc gggcctttgg ttaaaatcac tttcactgcc tcgaccgctt
     7621 gctcaaaatt ttccaccgtt aaaccggtta attctcttaa ttccactaaa tttggtgtga
     7681 taatgtcggc ttgtgccatt gccagattga tcaatccctc ttttacgccg tctgccacaa
     7741 tgcagccttt gtcggggtgt cccattaccg ggtcgcatac ataaattgcg tttggatttt
     7801 ccgctttcac tttatgaaaa gcctgaataa tttcggctac ttgttctgcc gagccgatat
     7861 agccagagag tacggcatcg caacgatgca gttcaccgat attgtgaatg ccatcaacaa
     7921 tgctaccgat ttgttctttt ggcatcacca taccgcccca ttttccatat tgggtatggt
     7981 tggaaaactg tacggtattt aacgcccata catcaacacc taacagctgc ataggaaaag
     8041 ttgaagcctt attgccggca tagccgtaga caacgtgcga ttgtatggat agtatgtttt
     8101 tcattcattc actcctttaa aatttcaata tgtgttgttt tttagtcatt tgaagttgca
     8161 aggacttgaa gctcatcaag aaatctctat aatcccgcct cgttctctta tccattcaat
     8221 atgccgactt agctcagtag gtagagcaac tgacttgtaa tcagtaggtc accagttcga
     8281 ttccggtagt cggcaccatc acctttattt tctgatgagt cccctttaat gtaaaatggc
     8341 aagattttgc aaattttcac aaaaatctta ccgcttgtag ggtgaaattg aattagacgt
     8401 aaccgtaatt cattaagcgt tgataacggc gttccagtaa atcctcttta ttaagttgat
     8461 ctaaccctgc caaatcttca acaatacgct gtttaaggtt ttgggcgatt tgttcaacat
     8521 tgcgatgagc accgcctaag ggttccggca cgatgttatc aatcagctca agctctttta
     8581 aacgaggggc agttaaaccc attacttctg ctgccgttga ggctttatcg gcacttttcc
     8641 acagaatcga ggcacagcct tcaggtgaaa ttaccgagta agttgaatat tgcaacatat
     8701 tgaccttatc gcccacaccg atcgctaatg caccgcccga gccaccttcg ccaattaccg
     8761 tacagattac tggcacggaa agttgagaca tttcacgcag gttacgggca atcgcttctg
     8821 actgaccacg ctcttccgca ccaatgcccg gataagctcc cggtgtgtcg ataaaggtga
     8881 tgattggcat attaaagcgt tctgccattt ccattaaacg taacgctttg cgatagcctt
     8941 caggagcagg cataccaaag ttacgtttca ctttctcttt tacggtacga cctttctgat
     9001 gaccgataac catcaccgga cgtccgtcca gacgggcaat accaccgaca atcgctttat
     9061 catcggcaaa ggcacggtcg cctgccagtt cgtcaaattc ggtgaaaata tgctcaatat
     9121 aatctaaagt gtacgggcga ttggggtggc gtgccatacg ggaaatttgc cacgcatcta
     9181 aattagcaaa ggttttcttg gttaattcct cgcttttctt ttgtaaacgc ttgatttcat
     9241 catcaagatt aattttgtca tcttgctcgc tgactgctct taaagactcg atcttggctt
     9301 ccaattcagc aatcggcaat tcaaaatcta aaaattcttg gctcattcta ttttcctttt
     9361 tatgggcaaa attatggggc attatcgctt atcagtcggt tattgtccat tttcaattac
     9421 gctaaattga cccatcgtac ctctatcacg cagcataaaa tcgctcacgc caaaggtaaa
     9481 tggcagttgc tcaggggcag tattatcaaa gcgaaccaac agcgtgattt cttgctccgc
     9541 ctcgagccaa acggtgtccc gccacgcaag ttgtttgata gggtattgct tgcggtttag
     9601 ggtttcaata atgaattttg caccttgtag cgtaaatccg accgcttgtg tgctatgtaa
     9661 ataccaacgc tcaacgctgc ctttttgcgc ggtaaaatca atgcgttttg ggtcaaaccg
     9721 cttttggttg attaaataat cagccggacg aatggcaaaa cgtctctctt ggctgatttt
     9781 caggttaaat tcctctaagt tgaaagccgg taaactcggt ttattattca ataccgctgc
     9841 cattccttca gggcgaagct ctaaaatcac gttatcattc aattcgtcgt tgtcagcaaa
     9901 gacctgcccg attttgtaaa aaatatctct tttttgaccg cttatcagcg ataccgcttt
     9961 cccttcgctt aaatcgacca acacttccac cctttcactc ggtgcaagtt gaaccgattc
    10021 ggtttcaagt ggctctgcca gcattcctaa gccggtggcg attaggtaca acggctgctc
    10081 gttatctaag cgtaattcat aagcacggga aagtgaggca ttgacgatcc gcaatctgac
    10141 ccagccacga ggcacgttaa aataaggcga ttcctgcccg ttgacaaata atcgcttacc
    10201 gaaaaattgt gaggtgtttt tatctaacac ctgtacgccg tctttgttga gcagctggtc
    10261 ttgcagaatt aacggaatgt cgttcacgcc atatttattc ggtaaagtgg cttttttgct
    10321 ctgttcatct tcaatcatcc acaagccggc taagccacga tacacttgga atgccgagtt
    10381 gagcattgta tcggcgtgat accaacaagt acaagccggt tgattgatag aaacaatcgg
    10441 cgaccagcta cttttggggt caagggaacg atgcaccgtg ccaatcatct cacttgaggc
    10501 ttgcaatcct tgaatattca ttgagatttt ttgcggtaaa ttattgagat aagttaattt
    10561 gacaaaatcc cccgatttta cccgtacggt tggggcaaga tattgcccgt tcacacccca
    10621 tacatcaacc aatttgcctt tatcaaattg ggtttgtgcg gggcgtaaat ccaaccgaac
    10681 cggctttcct cgcccaatat ccattaaagg cggaatgttc agttgcggtc gctctgctgc
    10741 taatagcggt gttggcactg ttgcaaatcc agccgcaagg gcagagcctt gtaaaaattg
    10801 gcgtcgggtg atctgttttt tcatattagg cgttttttgc agtgttttct aactgttcga
    10861 cttcttgatt aagttgttca aattttgcca acataatttg atggcacttt tccatcagtt
    10921 ctttgacgtt ttcacgggaa tagcctgaag tatcaatcgg atcaagcatt tcacagatta
    10981 ctgtgccgtt atttgaacgg ttcaaatcca ctttattgtg taaattagag caaactaccg
    11041 gcacaatcgg cacgccggca gaaatggcta aatggaatgc accggtttta aatggcagta
    11101 aaccacgccc acggctacga gtaccttccg ggaacatcca caccgacaca ttgcgttctt
    11161 tcacgatttg ccctgcttta ttcattgttt caatcgcact ggaacgcttt tcacggtgaa
    11221 taaaaatatt gccggttgcc cagtaaacca aaccgaaaaa cggaatccaa atcaggcttt
    11281 ttttgccgat actcaccgtc ttttctgcca ccattgagga aatcgttacc atatcgtaat
    11341 tgttttgatg attgccgata tagacaaccg gatagttaat ttccggcttt ttgcgggtaa
    11401 ttaattccaa cccgactaat ttatgcaaag caccaaacca acgagctacc acacccacgc
    11461 tacttgggtg acgtaaacgc agtaacgcat aaatagtgcc aaaaatagaa atgaaaatag
    11521 cggcaagggc aacaattaaa atacgaaaaa tttttaacat aatggaataa ccttaaaaat
    11581 aaattgtcta ggagtatagc aaaataaggt tattttctaa aggctatcca cattaaattg
    11641 atagtttcct attttgcaaa aaatcggtat atttaaaccg cttgtttatt tgataaggag
    11701 aaaaaaatga gtaaagtgac tttagcagga agcccgattg atgttgcagg cacatttcca
    11761 caaaaaggcg atgtggttgc cgattttacc ttagtcaaca gtgatttaag tgatgtttcg
    11821 ctttccgatt ttgatggcaa acgcaaagtg ttaaatattt tcccaagtat tgacaccggc
    11881 atttgtgcca cttctgtgcg tgtgtttaat caaaaagcgg ctgatgtagc gaatacggtt
    11941 gtcctttgta tttcagcgga tttacctttt gcccaagcac gtttctgtgg agcagaagga
    12001 attgaaaatg ccaaagtatt atccagtttc cgtcatcgtg atttacacaa caaactgggg
    12061 gtagatatta tttcaggtcc gttggcaggc ttaacttcac gttcagtaat tgtgttagat
    12121 gaaaacaaca aggtattaca cagcgaatta gtgccggaaa ttaaacaaga gccggattat
    12181 gaggcggcgt tagcggtatt ataatttgca gaattatgct ggaaaataac cgcttgtaaa
    12241 gcaacaaaaa gcccgttgat tcaattcaac gggctttgtt tttagtgatt atttcttacg
    12301 agagtgtaag ccttttttct caaggttacg gtaaatcaac cattgctgtg caatcgtgat
    12361 taagtttgag gttaaccagt aaagcactaa gcctgatggg aaccataaga agaacacggt
    12421 aaagataacc ggcataaagg tcattacttt ttgttgtacc gggtcagcta ccggtgttgg
    12481 cgacattttt tgtaacaaga acatcgaacc acccattaat aaaggcaaaa tgtagtatgg
    12541 gtcttgtgcc gataagtctt gaatccagcc gaagaaaggt gcgtggcgta attctaccgc
    12601 ttccataaat gtccaatata aagcaatgaa aatcggcatt tggattaaaa ttggtaagca
    12661 gccacccatt gggttcactt tttcttctct gtagagtttc atcatctctt ggctcatacg
    12721 ttggcggtcg tcgccgaaac gttcacgcat ttcagtaatg cgaggttgta acatacgcat
    12781 ttttgccatc gaggtgtatt gtgctttggt taatgggtaa agaatggttt tcactacaat
    12841 agtgacaccg ataattgcca agccccagtt gcttacgatt ttttgaattg cggttagtaa
    12901 ccagaaaagc ggtttagcga taaaccacgc ccagccgtaa tctacggtta agtctaggtg
    12961 atttgctgat tcgcccattt ctttctgatc tttagaacct gtccaaagtt tgctatttaa
    13021 attagcctct gaatttggcg caatcgtagt taaagggcca cggtaaccga tagttgctac
    13081 cccattattg gtgcgtgaat aaaggctgtt atccgcatct tggtttggca cccaagcaga
    13141 cacgaaatag tgctgtaata ccgcaatcca acccgctttg gtgtccacgc ttaagttggc
    13201 tttttccata tcttggaaac tgtatttttt gtagttggtt tctgaagaag aataagcccc
    13261 gccggtgtaa gtcggcatgg ttaaattgcc ggaactttca actatagagt gttttaattg
    13321 cccgtaaggc tgaacttcaa tcgcttgtgc agtattattt ttgatattga agtttacccc
    13381 aacatcgtag ctaccacgtt ttagcgtgaa agttttggtg taaaccacac cctctttttc
    13441 aaaggttaat ggtacagaaa tttcattttg cccttcggct aatttgaagc tatctgccgt
    13501 taccgcatat tgtgggcgac cggcattggt atcaatcccg tttttaccca ctaaaccgct
    13561 ttgagcaacg tagattttgt cgccgtcttg ctgtaatagt ttaaatggcg tgttagagtg
    13621 taattcagca ttgtgtttta acaaatctga gccgatgaca tcaccgccta aggtatcaat
    13681 agtcagacgt aatacatcgc tttccacggt aatggtttta ccttgcgtga tgctatctgc
    13741 gattggatta ttggcattgg aagcagacgg aagatcaccc gcttgttggg tttgtgctgc
    13801 cacttgagct tgtttttgtg cttgaatttc aggatcaaaa tcttgttgcc attgtgtaaa
    13861 aatcaaaata gacacaagaa ataaacccat tagcagtaag ccacgattat tcatgttgga
    13921 attctcttgt tagtaatgga taaaaagaaa ggtattttat aataggttag cttgttttcc
    13981 aaacgccttt tatgaacaag cggtcggatt ttccaagttt tttgcaaaat tttcggagaa
    14041 tttgaccgct tgtggagaat aagaaactag cgtttatcta aggttttggt ggaaaggcga
    14101 gcaactgcac acaggttacc ttgttcgtct ttaatgtcga tattccaaac ctgtacttca
    14161 cgccctaatt tcagcggtgt agctttggca atcgcttttg tgcctgccgg aatcgatttt
    14221 aaatggctga tgtttagctc cattcccacc gcaatttgat ggggttcaca caccattaac
    14281 gcccctgcat tggcagtagt ttccgcgagt gctgccgata caccgccgtg caatacgcca
    14341 aacggctgtt gagtgcgttc gtccacctga agctgtgctt caatccaatc ttcaccgata
    14401 gcggtaaatt caatccctaa gtgtgacacc gccgattttt ggctgagtgt gtttaattgt
    14461 tcacaagttg ctgtttgctt ccaaatggtc attattattt cctgtctaat aaaaaagctg
    14521 tctatttaga cagctttcat tatctctttg agcgaaacat actacgccaa tagtacattg
    14581 tttggtcgcc catattacct taagccatat agcactaagg aggtgattta tgtgagaaaa
    14641 tcagaagttt tctttctggt tgcgttgcta atattattag caacttccgc tagcattaaa
    14701 gtactcacca tacttgatgt gctagtttgg ttattcgcta gataacctaa aatcagacag
    14761 aggcaggctg gttacctgcc tcgcttttta ttctaagtac ttttaggtta catttcaacc
    14821 ttaaatcacg tccagcaacg cttgaattgg gtgtttaatg ccttgttgtt caaaacgttt
    14881 gacttgcgag cggcaggagt agccggttgc taggcaacgc tcaagcggtt tattttttaa
    14941 tttaatttgc catgattgct gataaatcgc tttcgacatt tcaacgtgtt tggtttcgtg
    15001 tccgaacgtg cctgccattc cacagcaacc gacattttca ttgagtaagg tttcaccaaa
    15061 atgggtgaaa atagcttgcc actctttcat tgagcttggc aaggcggtgg attcggtgca
    15121 gtgagcaaat aaataccacg gcaagcggtc ggaatttgcc gattttttgc aattttccag
    15181 ctcgccgttt ttaatcactt cccttaacca ttcgtgtgcc aataagactt tgaaatcccc
    15241 ccgagcttct ttgaggatct ctttgtattc ttcacgataa agcaaagtta aggcaggatc
    15301 gacagccacc atcggtagcc ccaatttcgc cacacggttt aaaaaatcgg cttggttttt
    15361 cgctgttttc gcaaatttat gcaaaaagcc tttaacgtgt tgtgctttac cgcttggctt
    15421 gaatggcaac acaatcggct taaagcctaa ttttttaatg agagcgataa agtctgccac
    15481 cactttggca tcgtaataag aggtaaacgg atcttgcaca ataaacaagg ttttgcaatt
    15541 ttttgcagaa aaatcaccgc ttgtagcttg ttgttcaagg ctttctaagc tctcgccttg
    15601 gtagccgact tccaccaact gatgttgcag atttggcact gacaatgccg gcaaataggt
    15661 cattccaatg gttttgtttg cagctttttc ggcaaaagtt gaggtgctga aaaagttaaa
    15721 aaaacgtggt tgtttcgcca ttaaaggggc gataaattct aagtttgaga ccacataatc
    15781 tttcagtggt cgcaaatagc ggctgtggta aagctcgtta aattgcgatc tgaacgtcgg
    15841 tacgtcaatt ttgattgggc attggctggc acaggctttg caggcaaggc aggtgtccat
    15901 cgccgctttg acttcgtgtg aaaaatcata ctctttgttt ttattgagcg tgttgcgaat
    15961 ttttgcaaca aaatcagcta atttgaccgc ttgtttgcga ggtttgaaga tcaaatcgtc
    16021 cggcgaaacg ttttgttcgg taagtaatct gagccattca cgcacaagag tagcccgccc
    16081 tttcggtgag taaagacggt tgcccgagac tttcattgaa gggcacatcg tgctgtgtac
    16141 atcaaagtta aaacatagcc cgttgccgtt acaattcatt gctcctttaa attcttctcg
    16201 cacttggatt ggaatttggc ggtcaaaatc ggctcgcatt tgtgagtcaa tcgggtagag
    16261 cgaggtttcg ctttctaatg gtgtacaaat tttacctggg ttcaagcgat tgtacgggtc
    16321 aaataaggtt ttgatgtaac ggagttcttg ccacaaagtt tcgccaaaga aacgttcgcc
    16381 gtagtaagaa cgcatacctt tgccgtgttc gccccaaatc aagccaccgt atttggcggt
    16441 gagttcgact acttggtcgg aaatttgctt aaaggtttcc acttgggctt tgtcgcataa
    16501 gtcaagagca gggcgaacgt gtagcacgcc ggcatcaacg tggccgaaca ttccgtaagg
    16561 cagattatag cgatctaata aagctcgaaa ttccacgatg taatcggcaa ggttttccgg
    16621 tggcacagcg gtgtcttcta caaaggcgat cggttttgcc cagcctttgg cattgcctag
    16681 caggcctacg gcttttttcc gcattgcgta gattttctcg atagaattta catcactcgt
    16741 gagttggtag ccgataatcc cggcttcatt atttgccatt ttttgatcaa ggctttggca
    16801 gagtgctttc acttgggttt caatttgagt ctgatcgctt gaggcatatt caacaatgtt
    16861 aatccctaaa atcgggttgg ctgggtcttc ggttaataaa tctgacaccg aatgccagac
    16921 gatatcttgc ttggcaagat tgagcacttt ggaatcaacc gtttccaccg ataaggcttt
    16981 tgcctctaac ataaaaggag cggagcgtaa ggcggcatca aaggaattat atttaatatt
    17041 aattaaggtg cgatatttgg gaatcggcag taaattcagt ttggcttcgc aaataaaggc
    17101 aagcgaacct tcagaaccgg ttaaaatacg ggtaaggtta aattcgcttt caccatggtt
    17161 aaacacattt tttaaatcat agccggtaat aaaacggtta agctgaggca gttcgttcag
    17221 cactttgggg cgtaatgttt tgcaacggtt gaaaatttca cggtgcaagg ttttgccgag
    17281 agcggagaga tttaaccctt caatatgtgc aaaaaaatcg gcagatttga ccgcttgtgt
    17341 ctctaaaata tcgccgttaa taagcacaga tttgatggca agaatatgat cagatgtttt
    17401 gccatattgc aaagaacctt gcccagaggc atcggtgttg atcattccgc ctaaagtcgc
    17461 tcggttactg gtagaaagtt cgggggaaaa gaaaagtcca tgtggtttta aaaattgatt
    17521 gagctggtct ttcaccacgc cagcctgcac tcgaacccaa cgctcttcca cattcagttc
    17581 caaaatctga ttcatatggc gggagagatc aacaataata ttattgttaa gagattgccc
    17641 gttagtgcct gtgccaccgc ctcgtggagt aaaagttaaa tgttgatatt ctggcttttg
    17701 ggcaagtttg gttagaatta cgacatcaga aacggatttc ggaaacagaa tagcttgcgg
    17761 aatttgctga tacacgctgt tgtctgttgc cagtgaaagc ctatctgcat aatttgatgc
    17821 aatttcccca ctaaaatgct gattgacgag ttcagttaaa taggattggg tggctttatc
    17881 cagttgcggt acttcagaga gtctaggtat cataagctgt gtttggtttt ttataataaa
    17941 agcactaaat tttgcttatc ttagc
//
LOCUS       DANLVT010000044        17887 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.044, whole genome shotgun sequence.
ACCESSION   DANLVT010000044 DANLVT010000000
VERSION     DANLVT010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17887)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17887)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17887
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.044"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..975
                     /locus_tag="PXC99_001246"
     CDS             <1..975
                     /locus_tag="PXC99_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PcfJ domain-containing protein"
                     /protein_id="HDL5417703.1"
                     /translation="VLYKIANEYPNLLPLLAYVKPEYWKCSDLFSYQNWVRSSDKQPF
                     ILYAKYQDKMLCESKGQWRWLKKQSRIVVDQCFLHVNQWQLLTEIQIPFKIPVCVICF
                     ILTNFSMISSELERSRQRRLLSIFIQYIYHYWKDNGFRQLKVHLSHLRVLFQDIEDYM
                     IHEGYLHGIPQTWKHLVSHSEQWHQHILEEQRRDQHILEEQRRENDEAHQALLSTSWS
                     SPIDICYINEIEFQPLTTGQMLFDEGQRMRHCIFTYIDICSEGRYLAFSVKIANESAT
                     LGLIKHRGNWKIEQFRYACNIAVCEPMILAAAQKLCKLLNKQSALPQN"
     gene            1071..1703
                     /locus_tag="PXC99_001247"
     CDS             1071..1703
                     /locus_tag="PXC99_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417704.1"
                     /translation="MKTKISLIAVFMLGLSGCVHQQNTAQNSDEITPMPDSLLKPQMQ
                     PLPPQDRIVSKDIYHEQTTSNTEVVRDGRYTLISIAPEEGQKYLLEQVVSVKVPNTKN
                     RFTANVQQGLRTTLTNTGLELCFPPIGEQGNAVQTLFTRPLPKVHYQFGPMKLYEALQ
                     MIAGPAYELTLNDITRTICFKARESSFQNPHKPAVAIQRQQLKPRSLRNN"
     gene            1715..2452
                     /locus_tag="PXC99_001248"
     CDS             1715..2452
                     /locus_tag="PXC99_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03759 family integrating conjugative element
                     protein"
                     /protein_id="HDL5417705.1"
                     /translation="MKRNTINIWLAVLSSVTTNALAQTTSIESSTQTLSQQQSQHQQS
                     QLSDSLKQAKEWGLTIEEWNRYTELMKGERGMWSPNLDPLTALGIEARTAEEREKYAR
                     MLAKKYYERVSKELDFDKVYRQEFEKLYPNELPFEVEPHISQSIGRVIYFTRFDNCDS
                     CKSDLSKILSYANSQTPLDIYIVGQNISDNDIRKWAAENNIDPIKVSKKLITLNHDKG
                     YWFQYSLGKMPAAYQIKQDGEWQSLVY"
     gene            2431..3195
                     /locus_tag="PXC99_001249"
     CDS             2431..3195
                     /locus_tag="PXC99_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
                     /protein_id="HDL5417706.1"
                     /translation="MAISRLLIVITLFAVGISDAKSKPFTGFGTEIDSYIRIAAQRYQ
                     ISEPMLRGLIKMEDGWYGNISPTGATGVGQFTVGTWNWLSETERGKQLGMRLITGKNK
                     GTYADPRRDKYTNTLATALLARWHIEQFHLRRIPATDENLYMAHNIGLDSLHRAMMGK
                     ATKEDILNMRRNGMKSWMTVRDFLNYQKGRFLAHKQEANFMLVSKQGHIHTGVSAFVY
                     PTSEMGKSVKWVEPDNKIIWVEPKSAMIWVEPTNTP"
     gene            3204..3710
                     /locus_tag="PXC99_001250"
     CDS             3204..3710
                     /locus_tag="PXC99_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HDL5417707.1"
                     /translation="MQHKIKMLLLSLCISHSVWGDLTVIADFGGESAVRFYEALQPEH
                     DENAPNYPNSIPASVSEADILPVVSHKLSPGIIETKQFDLTGIQAIFLIGADNTSAQW
                     LQQNREKLITLNATGLVVNVRTLAELNQLREIVPEIIMLPIPGDDLAERIGIAHYPAL
                     ITETGVSQ"
     gene            3710..5914
                     /gene="traD"
                     /locus_tag="PXC99_001251"
     CDS             3710..5914
                     /gene="traD"
                     /locus_tag="PXC99_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system coupling
                     protein TraD"
                     /protein_id="HDL5417708.1"
                     /translation="MSAKHTLEAWLRPPVEFFPAIVHASCAFVSAAAPWSLALHPSIG
                     YSIAAGFGALSFYRAKQGWQIVRYHQNLKRLPNYSMTSKQIPVSNKYLFVGKGFEWKP
                     IHTQRLHDCFSDNGSKYLEPSKLFKMAREYEKRHENWLTRLTSKDSRWNPVRPLPPVE
                     GIPAIHGIEPDEVDVVQSVSSRVGHTVVFGTTRVGKTRLAEVFVTQDIHRGKTPDERE
                     VVVFFDPKGDADMLKRMYAEAKRAGREDEFYVFHLGYPEISARYNPVGRFNRISEVAG
                     RISGQLSGAGNSAAFKEFAWRFVNIVARALVELGNRPNYVQISQFVQNIDSLFLDYAE
                     KFIRKTDPKIWENLATIAAGLDEKALPFGMKDRPLIFVINKYIAESAVFDPILQGLAS
                     AVRYDRTYFDKIVASLLPLLEKLTTGKISELLSPDYADILDERPIFDWESIIRKRGIV
                     YIGLDALSDATVAAAVGNSMFADLVSMAGHLYKFGTNEGLPGDMGRKTKLVKINLHCD
                     EFNELMGDEFIPLINKGGGAGVQVTAYTQTLSDIEARIGSKPKAGQTLGNFNTLYMLR
                     VKEPATAELLTKQLHEVTIKRSTVTSSTTDSSNPDDDKAFSSNTGQRISESTVPMLVP
                     ANITNLPKGQAFALLDGSKLWKIRMPLPAVDKDDMMPQSLRELTDYMRKNYHVVENWW
                     QPAFTEYTPSRDIAEAFEAMSEPQYNSRIDNQVDNFGIDEPYDIDEEENDDE"
     gene            5907..6260
                     /locus_tag="PXC99_001252"
     CDS             5907..6260
                     /locus_tag="PXC99_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL5417709.1"
                     /translation="MSSTKMREENRTNLLDLPNKYRNFDGEFSASCGLDNAEELLIHS
                     QSYFIEWFQQGYSFHQFAEKFAHQGLSLWSADEISMRNTDKSKDVFAFYLAFDHNPSG
                     YILVQCQLDREDSLQ"
     gene            6257..6952
                     /locus_tag="PXC99_001253"
     CDS             6257..6952
                     /locus_tag="PXC99_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03747 family integrating conjugative element
                     membrane protein"
                     /protein_id="HDL5417710.1"
                     /translation="MSEGAKPRRKSGLISLILGKINMLLAAITVSLIFSIILEWVGIA
                     FWWPEEGHLHSQTMMLNEMQWLSDDFSQSLFAKSSTAFATLIIENVYNWLFVYTGIKE
                     WLTSPGNGSMEQWAYHYGRAYIESVIYVVITFIIRLIIIIFTSPLFLLTALSGLTEGL
                     SLRDIRKFGAGRESAYLYHHARRYIMPMMVTAWVVYLSIPFSIHPNFILVPAACLFGL
                     SICITAASFKKFL"
     gene            complement(6982..7341)
                     /locus_tag="PXC99_001254"
     CDS             complement(6982..7341)
                     /locus_tag="PXC99_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417711.1"
                     /translation="MRYLALFPVFLPSIAYPLPQAHKVGDICHAENAPYNYGGLWELS
                     LRGNLVCNYWQFLGDDERKRIESQLDEYGELPLWYSSERETEEDEYPQYWEVEDWDGD
                     DWDIETENEGTNTITDE"
     gene            7539..7865
                     /locus_tag="PXC99_001255"
     CDS             7539..7865
                     /locus_tag="PXC99_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RAQPRD family integrative conjugative element
                     protein"
                     /protein_id="HDL5417712.1"
                     /translation="MSISTSLRKGIVVLVTLSCLPAFASTEQEQLAQAIKQLEAAKLS
                     LQRAEKVAKASPKTREYFNYSAIHRDIETVKKGIQQYINPSRALPRDPNVLRTLSEDY
                     SKLRGQ"
     gene            7865..8098
                     /locus_tag="PXC99_001256"
     CDS             7865..8098
                     /locus_tag="PXC99_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03758 family integrating conjugative element
                     protein"
                     /protein_id="HDL5417713.1"
                     /translation="MSYSPVDAFSAASGIDPFRLKLMIAIIFLSMLLLAVAWALNSGY
                     KGFSFRDKSPFSLLVLFLKGVALLVCVTYFFIY"
     gene            8113..8502
                     /locus_tag="PXC99_001257"
     CDS             8113..8502
                     /locus_tag="PXC99_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2976 domain-containing protein"
                     /protein_id="HDL5417714.1"
                     /translation="MSRIKSLTKHLHSRYLAVMLVFWGTIQHAFAAGPDASKIPDFQI
                     PGVDSNTKDPMEILWIVGKSIITLFAVLLAAGAIFVVVKALISIYNEATSENGKKGWG
                     HFIVALIIGFIVIFFCLWLVKLAVGLF"
     gene            8525..8890
                     /locus_tag="PXC99_001258"
     CDS             8525..8890
                     /locus_tag="PXC99_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03750 family conjugal transfer protein"
                     /protein_id="HDL5417715.1"
                     /translation="MPEQDTTIPFLPTRLNREATVYGGMTVSEFGISAGLGFMLGLIV
                     GLFLWILTDFWLLIPAMAMLLCIATVLIGKGVVAAVKRGKPEAYLNRLIEKKMDDLFN
                     GHKFIRREGFWSIRRYKRK"
     gene            8894..9538
                     /locus_tag="PXC99_001259"
     CDS             8894..9538
                     /locus_tag="PXC99_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03746 family integrating conjugative element
                     protein"
                     /protein_id="HDL5417716.1"
                     /translation="MSQLKSQLHEKDKHIKTTRIFAFLFFIIILVLAGVIYTFPSRLT
                     IYNPPDLRAGSQRAWWEIPKPTIYAFSYQIFQQMNRWMTNGEEDYEKNITALKPFLTP
                     HCEAFLRQDYKDRLRNNELRSRTRMVYEITGRGYSEDKVTVFSEDNWAVNLDLSVDEH
                     FQGQPVKRVYIRFPISIVRMDIDSVKNPWGLGFNCYHSIPKLLEGVEPKTEEKK"
     gene            9538..10419
                     /locus_tag="PXC99_001260"
     CDS             9538..10419
                     /locus_tag="PXC99_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03749 family integrating conjugative element
                     protein"
                     /protein_id="HDL5417717.1"
                     /translation="MKRLPILFASLLISFSGSSFADVLMKWERKPLPIALQVEKERII
                     FVDKNVKVGYPAELDGKLRIQSTGGAVYLKALETFPSTRIEFRDVSTGEIFLFDIVSA
                     TKVANPEESIRMVFDSAVEKQSFSTNRDDEPDLSLTGTRPQLPIPAALTRYAAQSLYA
                     PLRAVEPLEGVRRVAHRLPKKITTLLPAYSIEATPLISWQLDEYVVTAIRLQNKGNSQ
                     ITLDPRELQGQFYAATFQHNWLGGYGGNEDTTTLYLVTEGYANNALIPETHPVKPVGK
                     KVKKTTKVETKPTQSAK"
     gene            10431..11885
                     /locus_tag="PXC99_001261"
     CDS             10431..11885
                     /locus_tag="PXC99_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03752 family integrating conjugative element
                     protein"
                     /protein_id="HDL5417718.1"
                     /translation="MKANKALFVILGIVFTLVGGIVYALFWRSDTPQEPTEQEILDIS
                     IKDLTPEQVRSMGIQGDTPIDTLRTLVTTVKSNERRMDELIDENRQLKQKEDLVNGRI
                     SDAVNNETRKLQEQIADLKMQLFDMATHVNNKSTAQESTPQAEAQPSMTTNKGFGTAG
                     DKLPIGGASMPNVDIGGMYWVEPSDQIGLDAGGKAVSGNTLATKFGFPNDFKGGQTTG
                     NTEKKGLPFFPETDVVTGSQGTTGNSRGKNQITPVYTVPSNSTFLDSVAMTGLIGRIP
                     IDNKVSDAYPFKVLIGRENLIANGIELLDVEGAIVSGTATGDWTLSCVRGDVKSMTFV
                     FNDGRIVSTTNKGNSENIGWLSDSSGIPCVPGERKTNAPEYLGTNFFLAAASAAAQGF
                     SQSQTTTVVDGNSVVGAVTGDQGKFILGQAIGGGLKESADWFRKRFAENFDAVYVPPG
                     HRVAIHIEKEIEIDYNSKGRKVKYGNTSTNTQLD"
     gene            11898..12296
                     /locus_tag="PXC99_001262"
     CDS             11898..12296
                     /locus_tag="PXC99_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03751 family conjugal transfer lipoprotein"
                     /protein_id="HDL5417719.1"
                     /translation="MKALYCIMMSALLITGCTTSTEELLPANGSTMRDIWDKGAGNND
                     LHLYRSQQGRTLDPVDYIPNTEQRAYTRTAENEINNLFPRLPNPDLIMYVYPHQTRSG
                     EPLSIPGYSTVLPFYGRVQYAQPGDRTRGL"
     gene            12296..15133
                     /locus_tag="PXC99_001263"
     CDS             12296..15133
                     /locus_tag="PXC99_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugative transfer ATPase"
                     /protein_id="HDL5417720.1"
                     /translation="MMSFLSEVFSSFKPTKTEVISSEPNENSGESDIIQNKMSEVNGE
                     VQPLKRSGKLTLSQHHRRLYSQAPSFIDHLPWGEYLNQHGVILLDDARSVGAVFDIKP
                     IGTAGRSIEFLSRIRNLVKDALQDSFDELDINPYVVQFYCQDSDDLQPYIDQLRNYIS
                     PIAQNSAFSEEWLRVQAKHFKDIGKPEGLFIDDRVTNTAWSGRIRSTKMVIYRYVDKS
                     NDSNENLIIEQLNNACSRINGALTTAGLQLQRLDGEQIRQWLLRWFNPNPSINFEGLS
                     NNDCYHLFGKQTSNDDLPLAFTDFSEDLFYSQPRNEGSYWYFDGQPHEVVVVNNLRKQ
                     PEVGLMTGEITRGRNINALFDLLPESTIMAITIVIHPQDKLEAHLEKISSRAVGENFE
                     SKYLKEDCQTVQAYLKEGHKLYQAAIAFYVRGKDEKELRTRSRQLRTILLSNNLEPVK
                     ENAEIAPLNSYLRWLPMNFNPQMDAKSHYYTKYYFVQHLANLLPIFGRDTGTGNPGIT
                     YFNRGGAPFNFDPFNRKDRTKNAHKLLLGPTGSGKSATLCGQLCQAMAVYRPRTFVVE
                     AGNSFGLLADYAERFGLTVNRITLAPNSGIVLPLFSEAHRLLDMELNPEDVPEDIEDN
                     DDTDDEGDMQRDLLAEMELTARLMITGGEKKEDEKMSRADRAAIRRAILNAARQTKSE
                     GRQTLTEDVKKALEAISRDENTREERRTRLAEMAESLEMFCTGVNGQFFNREGEIWPE
                     ADLTLVDLAMFAREGYEAELAISYISLINHINSLGEKYQHSDRMILNVTDESHIITAN
                     PLLAKFLVKGSKMWRKLGIWLWLATQNMDDFPNEAAKLLSMVEWWELLNVSASEIDEI
                     NRFRKLSEAQKTMLLSAKKSDRKYTEGVVLATNMEALFRVVPPSLFLALGMTEKHEKA
                     ERRQLMMQHGYSELDAALEVAARIDKARGIA"
     gene            15133..15561
                     /locus_tag="PXC99_001264"
     CDS             15133..15561
                     /locus_tag="PXC99_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417721.1"
                     /translation="MMKQHYRLFNVGPQKSSLGIVSSAVETQLLGFCEQIRQLIGIGK
                     QITLFPHRVVQNHWAIELSGEKGSVHLLLNVTGRSLLPTSNYREWPARLVIEIADHVD
                     AYWFATFLAQQLDLKSNLFFLSTSIVDNSMHNEVTDTNEA"
     gene            15551..15868
                     /locus_tag="PXC99_001265"
     CDS             15551..15868
                     /locus_tag="PXC99_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL5417722.1"
                     /translation="MKPDTTMPKMKKVRAVLKTTLIIIGIILLLLIVGWLAMTYFPTT
                     NFQAWFYETRYAWLGWRFVLYGVIWFLMVKLNRRGQMPLKARLMILSAIPLIEGINLL
                     YLL"
     gene            15879..17396
                     /locus_tag="PXC99_001266"
     CDS             15879..17396
                     /locus_tag="PXC99_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
                     /protein_id="HDL5417723.1"
                     /translation="MTFTVDSYLEYFLTLLAWIINNNIFAVLVQTGLFILPLIFVLIG
                     TWMEVKKQGEDEGNKGDLLITWLSLKFYPAMFVVVLVLAPMIPINLNNIELNVERSKA
                     CGYRIPTSPEDSGYNQMNSELGNQQARVPLWWGLFHQINKGVTHALTASIPCKPDLRQ
                     VRFEVQHEKINNPALLTEVRLFVQQCYVPARQKIQSSQLSLTPAQVRETSWLGGRILL
                     TNSELYPRYRAQQPHSLFPYNASRDNGLPNNGEGGFPNCAEWWDTANTGLKDRLLADV
                     KQNFSAKVIDFFSSKENADESILRTVLRAENMDISRGKVYPGYGGNLDPTFANATTRL
                     TSSVGSLAASFAAFPAFDAMRQALPMVHAFMLMAVIIITPLVIVMSGYSLKTLVTLTF
                     VSFALVSLTFWWELARWLDSWLLSALYDSSAHSRINPYFLENTQDDFIVNFVMGSMFL
                     VLPAIWLGSMSWAGVKIGDIAAGFTTDSLDSKSAGSQGGNLVKKGGKEISAGFNK"
     gene            complement(17449..17829)
                     /locus_tag="PXC99_001267"
     CDS             complement(17449..17829)
                     /locus_tag="PXC99_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417724.1"
                     /translation="MKFIDFGKQLAKPVKFIKQRTAFLPKPLQQAVVFAVIFAGLPLF
                     LVGFTVLRILNGTPVEDISTNDVAYNPNHVENTVNEIEDDSEDSKPEDLWDVIADQDE
                     NQLDGYRDGYFGYGLYQGGYFVKR"
BASE COUNT         5497 a         3415 c         3739 g         5236 t
ORIGIN      
        1 gtattatata aaatagcaaa tgaatacccg aatctactac cattattagc ctatgttaaa
       61 cctgagtact ggaaatgctc agacttattt agttatcaaa attgggtaag aagcagtgat
      121 aaacagccct ttattttgta tgctaaatac caagataaga tgttatgtga atcaaagggt
      181 caatggagat ggttaaaaaa acagtcgaga atagttgtag atcaatgttt tctacatgtt
      241 aatcaatggc agttactaac agaaattcaa attcccttca agatcccagt atgtgtcata
      301 tgtttcattc ttactaattt tagtatgatc agcagtgaat tagaacgttc tagacaacgt
      361 cgattacttt ctatttttat tcaatatatc tatcattatt ggaaagataa tgggtttaga
      421 caattaaagg tgcatctttc tcatctgaga gtgctttttc aagatattga agattacatg
      481 atacatgagg gatatttaca tggtatacct cagacttgga aacatttggt ttcacatagc
      541 gaacaatggc atcaacacat attagaagag caacgaagag atcaacacat attagaagag
      601 caacgaagag aaaatgatga ggctcaccaa gcacttttat ctacatcttg gtcatctcca
      661 attgatattt gctatatcaa tgaaattgaa tttcaacctt tgacgacggg acaaatgtta
      721 tttgatgaag gacaacgtat gaggcattgt atttttacat acatagatat ctgctcagag
      781 gggagatact tagctttctc cgtaaaaata gccaatgaat cagctacttt aggattaata
      841 aaacatagag gaaactggaa aattgaacaa tttcgttatg cctgtaatat tgcagtttgt
      901 gagcctatga ttttagcagc agctcaaaaa ctatgtaaat tacttaacaa acaatcagcc
      961 ttacctcaaa attaatttta tctcccaatc aacaatagaa taaatcattc aaaatcagca
     1021 atgacttcgc catagttggc ttagattcct ttcacacttg gagagattaa atgaaaacaa
     1081 aaatatcctt aattgctgtt tttatgcttg gtttaagtgg ttgtgttcat caacaaaata
     1141 ctgctcaaaa cagtgatgaa atcacaccta tgcctgattc attactaaaa cctcaaatgc
     1201 aaccattacc tccacaagac cgtatcgtgt ccaaagatat ctaccacgaa caaactacct
     1261 cgaataccga agtagtacgt gacggacgtt acaccttaat cagtattgct cctgaggaag
     1321 gacaaaaata tctgcttgaa caagtggtat cggtaaaagt gcctaatact aaaaatagat
     1381 tcacagccaa tgttcagcaa ggcctccgta caacattaac caatacaggg ttagaactgt
     1441 gctttccacc aataggtgaa cagggcaatg cagttcaaac gctttttact cgcccacttc
     1501 cgaaagtcca ttaccaattc ggtccgatga aattatatga agctctacaa atgatcgcgg
     1561 gaccggctta tgaattaaca cttaatgata ttactcgtac gatttgcttt aaagctcggg
     1621 aaagctcatt ccaaaatcct cataagcctg ctgttgctat tcaacggcaa caattaaaac
     1681 cgaggtcatt gaggaataat tgagggaaac tccaatgaaa cgaaatacta tcaatatatg
     1741 gttagccgta ctctcttcag tgactacaaa tgctcttgct caaactacat caatagaaag
     1801 tagcacacag accttatcgc aacagcaaag ccaacatcaa caatcacaat taagtgatag
     1861 cctaaaacag gcaaaagagt ggggattaac cattgaagaa tggaatcgct acaccgaatt
     1921 aatgaaaggt gagcgtggta tgtggtcgcc aaacttagat cctcttacag cattaggtat
     1981 tgaagcaaga actgctgagg agagagaaaa atatgctcgt atgttagcaa aaaaatacta
     2041 tgaacgtgtg tccaaagaac tggattttga caaagtctat cgtcaggagt ttgagaaact
     2101 gtatccaaat gaacttcctt ttgaagtaga accacacatt tcacaatcca taggtcgagt
     2161 gatttatttt acacgttttg ataattgcga ttcttgtaaa agtgatctca gtaaaatcct
     2221 ctcttatgcc aatagccaaa caccgcttga tatctatatt gtagggcaaa acatttctga
     2281 taatgatatc cgcaaatggg ctgctgagaa taatattgat ccgattaaag tgagtaagaa
     2341 actgattaca cttaatcatg ataagggtta ttggttccaa tattcattag gtaaaatgcc
     2401 ggcagcgtat caaataaaac aggatggtga atggcaatct ctcgtttatt aatcgttatc
     2461 acgctatttg cggtcgggat aagtgatgct aagtcaaaac cttttaccgg atttggtaca
     2521 gaaattgata gctatatccg tatagcagct cagcgttatc aaattagcga accgatgcta
     2581 agagggctaa taaaaatgga agatggttgg tatggcaata tctcacctac tggtgccaca
     2641 ggtgtagggc aatttactgt gggaacgtgg aattggctat ctgaaacaga acgtggtaag
     2701 cagcttggta tgcgtttaat taccggtaag aataaaggta cttatgctga tcctcgcaga
     2761 gataaataca ccaatacgtt agcaacagcg ttattagctc gatggcatat tgaacaattc
     2821 catttacgtc gcattccggc aacagatgaa aatttatata tggctcataa cattggttta
     2881 gatagtctgc atcgagcaat gatgggaaaa gctaccaaag aagatatctt aaatatgcgt
     2941 cgcaatggaa tgaaaagttg gatgacagta agagatttcc tcaattatca aaaaggacgc
     3001 tttttagcac ataaacaaga agccaatttt atgttggtct caaaacaggg gcatattcat
     3061 actggtgttt ccgcctttgt ttatcctaca agtgaaatgg gaaaatcagt aaagtgggtt
     3121 gagccagaca acaaaataat ttgggttgaa cctaaaagtg caatgatttg ggtagaacct
     3181 acaaatacgc catagaggta aaaatgcaac ataagataaa aatgctattg ctcagtttat
     3241 gtatatctca ttccgtttgg ggcgatttaa cggtaatcgc tgatttcggc ggtgaaagtg
     3301 cggtacgttt ttacgaagct ttacaaccgg aacacgatga gaatgcaccg aactatccga
     3361 attctattcc agcttcggtt agcgaagctg atattctacc tgtagtctct cataaactgt
     3421 ctcctggtat tattgaaaca aaacaatttg atttaacagg aatacaagcg atttttttaa
     3481 ttggagcaga taatacctca gctcaatggt tacagcagaa tcgagaaaag ttgatcacgt
     3541 taaatgccac tgggcttgtt gtgaatgtcc gaacattagc agagctgaat caattacgag
     3601 aaattgtgcc agaaataata atgctaccaa tccccggaga cgaccttgca gaacgaattg
     3661 gtatcgcaca ttaccctgcc ctgattactg aaaccggagt ttcacaataa tgtcagctaa
     3721 acataccttg gaggcgtggt tacgccctcc tgttgagttt tttccggcaa ttgttcatgc
     3781 ttcttgtgct tttgtcagtg ctgctgcgcc ttggtctcta gcactccatc caagtatcgg
     3841 ctatagtatt gcagccggtt tcggtgcgtt gagtttttat cgagcaaaac aaggatggca
     3901 aattgttcgt taccatcaaa atctgaaacg tttaccgaat tattcaatga cgagtaaaca
     3961 aattccggtc agtaataagt atctatttgt cggcaaggga tttgaatgga aacctattca
     4021 cactcaacgg ctacacgatt gtttttcgga taacggttca aaatatctgg agccttctaa
     4081 gctatttaaa atggctcgtg agtatgaaaa acgccacgaa aattggctaa cacgtcttac
     4141 ctcaaaggat agccggtgga atccggttag acctctgcca ccggttgagg gtattcctgc
     4201 tatccatgga attgagccgg atgaagttga tgtcgttcaa tccgttagct ctcgggttgg
     4261 gcatacggta gtattcggta caacacgtgt cggtaaaact cgtttagctg aggtctttgt
     4321 tacccaggat atccaccgag gcaaaacacc ggatgagcgt gaggttgttg tctttttcga
     4381 tccgaaaggc gatgccgata tgctcaaacg aatgtatgca gaagcaaagc gagctggaag
     4441 agaagatgag ttttatgttt tccatttggg atatcctgaa atttcggctc gctataaccc
     4501 agtgggacgt tttaatcgta tatcagaagt cgctggacgt atttcaggac aactcagtgg
     4561 agccggtaac tcagcggcat ttaaagagtt tgcttggcga tttgtcaata tagttgcacg
     4621 tgcattagtt gaattaggaa atcgtccaaa ctatgttcag atttcccaat ttgtacaaaa
     4681 cattgattca ttattccttg attatgcgga aaaatttatt cgtaaaactg accctaaaat
     4741 ttgggaaaat ttagcgacaa tagccgcagg attagatgag aaagctcttc cttttggaat
     4801 gaaagatcgc cctctaattt ttgtgatcaa caaatatatc gctgaaagtg cagtgtttga
     4861 cccgatttta caaggactcg ccagtgccgt gcggtatgac cgtacctatt ttgataaaat
     4921 tgttgcttcg ttattgccgt tattggagaa attaacgacc ggaaaaattt ccgaactttt
     4981 atctccggat tatgccgata ttttggatga acgccctatt tttgactggg aatccattat
     5041 ccgtaaacga ggaattgttt atattggttt ggatgctctc tccgatgcta cagttgctgc
     5101 cgcagtcgga aacagtatgt ttgcggattt agtatcaatg gcaggtcatt tgtataaatt
     5161 tgggacaaat gagggattgc cgggtgacat gggcagaaaa accaaactgg tgaaaatcaa
     5221 tcttcattgt gatgaattca atgaattgat gggcgatgaa tttatccctc tcatcaacaa
     5281 aggtggtggt gccggagtac aagttactgc ttatacgcaa acgctctccg atattgaagc
     5341 ccgtattggc agtaaaccga aagcgggaca aaccttaggt aactttaata ccctatatat
     5401 gctcagggta aaagaacccg ctacggcaga attgcttaca aaacagttac acgaagtgac
     5461 gattaagcgt agcacggtca cgtccagtac gactgactcc agtaacccgg atgatgacaa
     5521 ggcatttagc tcaaatacag ggcagcggat tagtgaaagt actgttccta tgctggttcc
     5581 tgccaacatt accaatttac caaaaggaca agcattcgct ttactggatg gtagtaaatt
     5641 atggaaaatt cggatgccgt taccggctgt cgataaagat gatatgatgc ctcaatctct
     5701 acgagagctg acagattata tgcgtaaaaa ctatcacgtt gtcgaaaatt ggtggcaacc
     5761 agcatttaca gaatatacgc cgtcccgaga tattgcagaa gcttttgaag cgatgtcaga
     5821 gcctcaatat aactcacgga tagacaatca ggtcgataat ttcggcatag atgaacccta
     5881 tgatattgat gaagaggaaa atgacgatga gtagtaccaa aatgagagaa gaaaatagaa
     5941 ccaacctctt agatttaccc aataaatacc gtaattttga tggcgagttt tcagcttctt
     6001 gtggactaga caatgccgaa gagctcctta ttcatagcca atcctatttt atcgagtggt
     6061 ttcaacaagg ctactctttc catcaatttg ctgaaaaatt tgcacatcaa ggactttcat
     6121 tatggtctgc tgatgaaata tctatgcgta atactgataa atctaaagat gttttcgctt
     6181 tttatcttgc atttgatcat aatccttctg gctatattct tgttcaatgt cagctcgatc
     6241 gggaggatag tctgcaatga gtgaaggagc taaacctcgt cgaaaatcag gtttaatcag
     6301 cctgattttg ggaaaaataa atatgttgct tgctgcaatt acagtatctc tcatattcag
     6361 cattatttta gagtgggtag gaattgcgtt ttggtggccg gaagaaggac acttgcatag
     6421 ccaaacgatg atgctcaatg agatgcaatg gctatcagat gatttctctc aaagcctgtt
     6481 tgccaaatct tctactgctt ttgcaacatt gattatcgaa aatgtctata attggttatt
     6541 tgtttatacg ggtattaagg agtggctaac ttcaccgggt aacggtagta tggaacagtg
     6601 ggcatatcac tatggtagag cctatattga gtctgttatt tatgtcgtga tcacctttat
     6661 tattcgcctc attattatta tttttaccag tcccctcttt ctattgaccg cactttctgg
     6721 tttaaccgaa ggattatcat tacgggatat tcgaaaattt ggtgccgggc gggaatcagc
     6781 ctacctatac caccacgcta gacgttatat tatgccgatg atggtaacag cttgggtagt
     6841 ttatttgtct atcccgtttt cgattcaccc taacttcatt ttagtccctg ctgcctgttt
     6901 atttggtttg tccatctgta taactgcagc gagcttcaag aaattcttgt aaagataata
     6961 agcctcagta atatactggg gctattcgtc tgttatagtg tttgtccctt cattttctgt
     7021 ttcaatatcc caatcatctc catcccaatc ttcgacttcc cagtattgtg gatattcatc
     7081 ctcttcggtc tctcgttcag agctatacca aagaggcaat tccccatatt catccaattg
     7141 tgactctatg cgttttctct cgtcatcacc cagaaattgc caataattac agactaaatt
     7201 tcccctcaaa cttaattccc aaagaccacc gtaattatat ggggcatttt ctgcatggca
     7261 gatatctccc actttatgtg cctgcggaag agggtaagca attgatggga gaaatacagg
     7321 gaatagagct aaatatctca tctggtatct catggtaaag cgtgaatact caactttaat
     7381 actaacttat taagtaacac tgacacagtt gaatatcttt ctaaccattt aatattttgt
     7441 gcaatttctc ttctgattgg taacagagtt ttccattaaa ttttaggatc gcttttggca
     7501 ctcttaactt gaagtaaaac taaaaataga ggtgcactat gtctatttca acatctttaa
     7561 ggaaaggtat tgttgttctt gttaccttat cttgcttgcc ggcatttgct tcaacagaac
     7621 aagagcaatt agctcaggca attaagcaac tggaagcggc taaattatca ctccaacgag
     7681 cagaaaaagt ggctaaagcc tcgcctaaaa cacgagaata cttcaactat tctgccattc
     7741 accgtgatat tgaaaccgtc aaaaagggaa ttcaacaata tatcaaccca agcagagcat
     7801 tacctcgtga tccgaacgta ctacgtactt taagtgaaga ttacagcaaa ctacgggggc
     7861 aatgatgtcc tattcccctg ttgatgcatt ttctgcagcg agtggtatcg atcctttcag
     7921 attgaaactc atgatagcta ttattttcct ttcaatgctg ttactagcag tcgcttgggc
     7981 cttaaatagt ggctataagg ggttttcatt tagagataaa agtccttttt cacttttagt
     8041 tttatttctc aaaggagtag cactattagt ttgtgttact tatttcttta tctattagat
     8101 tcgaggtcta ttatgagccg tattaaatct cttacgaaac atctgcatag tcgttattta
     8161 gctgtaatgc tcgtattctg gggaactatc caacatgcgt ttgcagccgg tccggatgca
     8221 tccaaaatcc cagacttcca aattccaggc gtggatagta atactaaaga tccaatggaa
     8281 attctttgga ttgtaggtaa aagtatcatt accttatttg cggtattact tgccgccggt
     8341 gccatttttg ttgtcgttaa agccttgatc agtatctata acgaagcaac ttctgaaaac
     8401 ggcaagaaag gctggggaca ctttattgtt gctttaatta tcggctttat tgtgattttc
     8461 ttctgcttgt ggttagtcaa acttgcagtc ggactcttct aattaaaatg tctaggagac
     8521 caatatgcca gaacaagata caaccattcc ttttttgcct actcgcctca atcgagaggc
     8581 taccgtttac ggcggtatga cagtgagcga attcggcata tctgctggat tgggatttat
     8641 gttaggtctg attgttggtc tcttcttgtg gatattaact gatttttggc ttcttattcc
     8701 ggcaatggca atgttgctct gtatcgcaac cgttttaatt gggaaaggtg ttgtagccgc
     8761 tgttaagcga ggaaagcccg aagcctactt aaataggtta attgaaaaga aaatggatga
     8821 cctctttaac ggtcataagt ttataagacg agaagggttt tggtctattc gccgatataa
     8881 aaggaaataa caaatgagcc agttaaaaag ccaattacac gaaaaagata aacatatcaa
     8941 aacgactcga atttttgcct tcctgttttt cattattatt ttggtgctcg caggcgtgat
     9001 ctacacattc ccaagtcgcc ttacgatata caacccacca gatctacgag cagggagcca
     9061 acgagcttgg tgggaaattc ctaaaccaac aatttatgca ttttcttatc aaattttcca
     9121 gcaaatgaat cgttggatga caaatggcga agaggattac gagaagaata ttaccgccct
     9181 caaaccattt ttaacaccac actgtgaagc atttttacga caagattata aagatcgtct
     9241 ccgtaacaat gaactacgta gccgaactcg tatggtatat gaaattaccg gtcgaggcta
     9301 cagtgaagat aaagtgaccg tatttagcga agacaattgg gccgtcaatc ttgatttaag
     9361 cgtagatgaa catttccaag gacaaccggt aaaacgagtc tatatacgtt ttcctatcag
     9421 tattgtgaga atggatatcg attcagtcaa aaatccttgg ggattagggt ttaactgcta
     9481 tcactccatt ccaaaactct tagagggcgt tgagccaaaa acagaggaga aaaaataatg
     9541 aaacgtctac caattttatt cgcttcttta ctaataagct tctctgggag tagctttgct
     9601 gatgtcttga tgaaatggga aagaaaaccc ttgcctattg cattgcaagt ggaaaaagaa
     9661 cgaatcattt ttgtcgataa aaatgtcaaa gttggctatc cggctgaatt agatggcaaa
     9721 ttacgcattc aatcaacggg tggcgcagtg tacttaaaag ccctagagac attcccttct
     9781 acccgtattg aatttcgtga tgtttctaca ggtgaaattt tcctctttga tattgtttct
     9841 gcaaccaaag tagctaatcc ggaagaatca atacgaatgg tatttgatag tgcggtagaa
     9901 aaacaatctt tttcaacgaa tagagatgat gaacctgatc tatctttgac cggcacacga
     9961 ccacaattac cgataccggc agcattaacc cgttatgccg cacaatcact ttatgcgcca
    10021 ctgcgtgcag ttgagccttt agaaggagtt cgtcgtgtag cacatcgact tccgaaaaaa
    10081 attaccacat tgctccctgc gtattcgata gaggcaacac ctttaatcag ctggcaattg
    10141 gacgaatatg tagtcacggc tattcgtcta caaaacaaag gtaatagtca aattacactc
    10201 gatcctcgag aacttcaagg acaattttat gctgcaactt tccagcataa ttggcttgga
    10261 ggatatggag ggaatgaaga taccacaacc ctgtatttag tgacggaagg ctatgctaat
    10321 aatgcgctta ttccggaaac tcaccctgtt aaacccgtcg gtaagaaagt gaaaaaaaca
    10381 acaaaagttg aaactaaacc gactcaatcg gcgaagtagg aggagaagct atgaaagcga
    10441 ataaagcctt gtttgtcata ttggggattg tgtttaccct agtcggtggg attgtctatg
    10501 ccttattttg gcgaagtgat acaccccaag aaccaacaga gcaggaaatt ttagatattt
    10561 ccattaaaga tttaacaccg gaacaagtca gatcaatggg cattcaaggt gatacgccga
    10621 ttgatactct gcgtactctt gtgacaaccg ttaaatccaa tgagcgtcgt atggatgaat
    10681 taatcgatga aaaccgacaa ctcaagcaga aagaagattt agtgaatggt cgtatcagtg
    10741 atgcagtgaa taatgaaact cgcaaactac aagagcagat tgcagatttg aaaatgcagt
    10801 tatttgatat ggcaacacat gttaataaca aatcgacagc acaagaatca actcctcaag
    10861 cagaagctca gcctagtatg acaacgaata aaggatttgg tactgccgga gataaattac
    10921 ctatcggtgg tgcttctatg cctaatgtgg atattggagg aatgtactgg gtagagccaa
    10981 gcgatcaaat tggattggat gcaggtggaa aagctgtatc aggtaataca cttgcaacta
    11041 agtttggatt cccgaatgat tttaaaggtg gacaaactac tggaaatacc gaaaagaaag
    11101 gtctgccgtt tttcccggaa actgatgtag tgacaggctc gcaaggaaca acaggaaatt
    11161 ctcgtggtaa aaaccagatt acgccggttt acaccgtacc aagtaattcc acattccttg
    11221 attcagttgc aatgacaggg cttattgggc gtatcccgat tgataataaa gtctctgatg
    11281 cttatccatt taaagtactg attggtcgtg agaatctcat tgccaatggt attgaattac
    11341 ttgatgtaga aggtgcgatt gtttcgggta cagctactgg cgactggact ctatcttgtg
    11401 tacgaggcga tgtaaaaagt atgacctttg tgttcaatga tgggcgtatt gtcagcacga
    11461 ctaacaaagg gaatagtgag aatatcggtt ggttatctga tagttcaggc attccttgtg
    11521 ttcccgggga gagaaaaaca aatgcaccag aatatttagg cacaaatttc ttcttagcgg
    11581 ctgccagtgc cgcagcccaa gggttttcac aatcacaaac aacgacagta gttgatggca
    11641 atagtgttgt tggagctgtt accggtgatc aaggtaagtt catcttaggg caagccatcg
    11701 gcggtggttt aaaagaatcc gccgactggt ttagaaagcg ttttgctgaa aactttgatg
    11761 ctgtctatgt accacctgga catcgtgtcg ctattcatat cgagaaagag attgagatcg
    11821 attacaactc caaaggacgt aaagtgaaat acggaaacac atcaactaat acacaacttg
    11881 attaaaagga acaaacaatg aaagctttat attgcataat gatgagtgcc ttattgataa
    11941 caggttgcac aacttcaact gaagaattat tacccgctaa cggcagtacg atgcgagata
    12001 tttgggataa aggagcaggt aataacgatc tacacttata ccgttcacaa caaggacgaa
    12061 cactcgatcc tgtcgattat attcctaaca ctgagcaacg agcctatacc cgtacggcag
    12121 aaaatgaaat taataacttg ttccctcgtt tacctaatcc ggatctgatt atgtatgtgt
    12181 atccacacca aactcgttcc ggagagcctc ttagtattcc aggatattct acggtattac
    12241 ctttctacgg gcgagtccaa tatgctcaac cgggtgatcg aacaagaggg ctttgatgat
    12301 gtctttttta agtgaggtat tttcctcttt caaaccgact aagacagagg ttatatcaag
    12361 tgaaccaaat gaaaattcag gtgagtctga catcattcaa aataaaatga gtgaggtaaa
    12421 tggcgaggtt caaccattaa aacgcagtgg aaaactcacc ctgtcacagc atcaccgtcg
    12481 gttatactca caagccccct cttttattga tcatctacct tggggagaat atttgaatca
    12541 acacggtgtg atactcctcg atgatgctcg tagtgtcggg gcggtatttg atatcaagcc
    12601 gattggtaca gcaggacgta gtattgagtt tttaagcagg atacgaaatc ttgtcaaaga
    12661 tgccttacaa gatagctttg atgagctgga tataaatcct tacgtcgtgc aattttattg
    12721 ccaagatagc gatgatttac agccttatat tgatcagcta cggaattata tctcgcctat
    12781 tgcccaaaat agtgcattta gcgaagaatg gttacgagta caagccaagc atttcaagga
    12841 tattggtaaa ccagaagggc tttttattga tgacagagtg acaaatacag cttggtctgg
    12901 acgtattcgg agtaccaaaa tggtgattta tcgatatgta gataagtcca atgattccaa
    12961 tgaaaatctt attattgagc agcttaataa tgcttgttcc cgaatcaatg gggctctaac
    13021 aacggctgga ttacagttac agcggctaga tggtgaacaa attcgccaat ggttattgcg
    13081 ttggtttaat cctaatccat ctattaattt tgagggatta agcaacaatg attgttacca
    13141 tctttttggc aaacaaacct caaatgatga tcttccatta gcttttactg atttcagtga
    13201 ggatttattt tattcacagc cgagaaatga aggtagctat tggtattttg acggacagcc
    13261 acacgaggtt gttgtcgtca ataatttaag aaaacaacca gaagtgggct taatgaccgg
    13321 cgagattact cgtgggcgta atattaatgc gttatttgac ctattgccag aatcaaccat
    13381 catggcaatt accatcgtca tccatcctca ggataagttg gaagcacatt tagaaaaaat
    13441 cagtagtcga gcagtgggtg agaattttga gtcaaaatac ctaaaagaag actgtcaaac
    13501 tgtacaggct tatcttaaag agggtcataa actctatcaa gcagctattg cattttacgt
    13561 tcgaggtaag gacgaaaagg aattgcgtac tcgatctcgc caactaagaa caattctgct
    13621 cagtaacaat ttagagccgg taaaggaaaa cgcagaaatt gctcctctta atagttacct
    13681 acgttggcta ccaatgaatt ttaatccgca gatggatgcc aaatcccatt actacacgaa
    13741 gtactatttt gtacaacatt tggcaaactt attgcctatc tttggtcgag atacaggcac
    13801 tggtaatccg gggattactt actttaatcg aggaggagct ccgtttaatt tcgatccgtt
    13861 taaccgtaaa gacagaacca aaaacgctca caaactctta ttaggaccaa caggctcagg
    13921 aaaatcagca acactatgtg ggcaattatg tcaggctatg gccgtttatc gtcctcggac
    13981 gtttgttgtg gaggcaggaa attcatttgg tttattagcg gactatgcag aacgttttgg
    14041 actgaccgta aatcgcatta cgttagcccc aaacagtggc attgtcttac cgctcttttc
    14101 agaagcccat cggttattgg atatggaatt aaatccggaa gatgtgccgg aagacattga
    14161 ggataacgat gacactgatg atgaaggcga tatgcaacga gatttgttgg ccgaaatgga
    14221 gctgacagca cgtttaatga tcactggtgg cgaaaagaaa gaagatgaaa aaatgagccg
    14281 tgctgacaga gcagccattc gacgtgccat tttaaatgcg gctcgccaaa ctaaatccga
    14341 aggcagacaa acgctaactg aagatgtgaa aaaggcattg gaggctataa gccgtgatga
    14401 aaatactcgt gaagaacggc gtactcgttt ggccgaaatg gcagaatcat tggaaatgtt
    14461 ctgtaccgga gtcaatggac aatttttcaa ccgggaaggc gaaatttggc cggaagcaga
    14521 tctgacattg gttgatctag ccatgtttgc ccgggaaggt tatgaagcag aattggccat
    14581 ttcctatatt tcactcatta accatatcaa cagtctcggt gaaaaatacc agcatagcga
    14641 caggatgatt ctgaatgtaa ccgatgaatc acacattatc actgccaacc cattattagc
    14701 gaaattcttg gtgaaaggct caaaaatgtg gcgtaaatta gggatttggc tgtggcttgc
    14761 gacacagaat atggatgact tccccaatga agcagcgaaa ttgctctcaa tggtcgaatg
    14821 gtgggaactg ttgaatgtgt ctgctagtga aattgatgaa atcaatcgct tccggaaact
    14881 gtccgaagct cagaaaacga tgttgttatc tgccaaaaaa tcagatcgta aatataccga
    14941 aggtgtggta ttggcaacaa atatggaagc gctattccgt gttgtaccac cgagtttatt
    15001 tttggcttta ggaatgaccg agaaacacga aaaagcagaa cgtcggcaat taatgatgca
    15061 acatggttat tctgaattag atgctgcttt agaagtcgct gctcgtattg ataaagcgag
    15121 gggaattgca taatgatgaa acaacactat cgactattta atgtcggacc acaaaaatcc
    15181 tcattaggga ttgtatcttc ggcggtagaa actcaactgc ttggattttg tgaacaaatt
    15241 cgccaactca tcggtatcgg gaagcagatt accttattcc ctcatcgggt agtgcaaaac
    15301 cactgggcta tcgaacttag cggcgagaaa ggctctgttc acttattact aaatgtgacg
    15361 gggcgttctt tactgcctac ttccaattac cgtgaatggc ctgctcgttt agtcatcgaa
    15421 atagccgatc atgtggatgc ttactggttt gcaacattcc ttgctcagca attggatttg
    15481 aaaagtaatc ttttcttctt atccacatca attgtggata actctatgca taacgaggta
    15541 acggatacta atgaagcctg atacgacaat gcctaaaatg aaaaaggtga gagctgtatt
    15601 aaaaacaacc ttgattatca tcggtattat cttactacta cttattgttg gttggctggc
    15661 aatgacctat ttccctacca caaattttca agcgtggttc tatgaaaccc gttatgcatg
    15721 gttgggatgg cgatttgtat tatatggggt tatttggttc ttaatggtaa aactcaatcg
    15781 aagaggacaa atgccattga aagccagact gatgatttta tctgctatcc cccttataga
    15841 gggaattaat ttactgtatc tactttaagg aggatgagat gacctttacc gtagatagct
    15901 acttagaata ctttttgacc ttactagctt ggatcattaa caataatatt tttgctgtac
    15961 tggttcaaac cggtctattc atactaccgc tgatttttgt tttaatcggc acatggatgg
    16021 aagttaaaaa gcaaggggag gacgaaggta ataaaggaga tttacttatt acttggctca
    16081 gccttaaatt ttatccggcg atgtttgttg tagtgttagt tttggccccg atgataccta
    16141 tcaaccttaa caatattgag ctgaatgttg aacgttccaa agcctgtggc taccgtattc
    16201 caacctcacc agaggatagt ggttataatc aaatgaactc tgaattgggc aaccagcaag
    16261 cgagagtacc gctttggtgg ggattattcc atcaaatcaa caaaggagtt acacacgcat
    16321 taacagcttc aattccgtgt aaaccggatt tacgtcaagt tcgctttgag gtccaacatg
    16381 aaaaaatcaa taatcctgca ttattgactg aggttcgctt atttgtacaa caatgttatg
    16441 tacctgcacg tcagaaaatt caaagcagtc agctctcatt gactccggca caggtgcgtg
    16501 aaaccagctg gttaggtggt cgtattcttt tgacaaacag tgagctttat ccccgttatc
    16561 gagctcaaca acctcatagt ctatttccct acaatgcttc ccgggataat ggattgccga
    16621 ataatgggga aggtggtttt ccaaattgtg cagagtggtg ggatacggcg aatactggtt
    16681 taaaagatcg tttattagct gatgtcaaac agaacttctc tgcaaaagtg attgattttt
    16741 ttagcagcaa agaaaatgcg gatgaatcca tactccgtac tgtattacga gcagagaata
    16801 tggatatttc gagagggaaa gtttatcccg ggtatggggg gaatttagat cctacatttg
    16861 caaatgcaac gactcgatta acatcttcag tgggaagctt agctgccagc tttgcagcct
    16921 ttccagcatt cgatgcaatg cgacaagcac tgccgatggt acatgctttt atgttgatgg
    16981 ctgtgatcat cattactccg ctggttattg tgatgagtgg ttattctctc aaaacattag
    17041 ttacattaac ttttgtgagt tttgctttgg tatcactgac attctggtgg gaattagcaa
    17101 gatggttaga ttcttggcta ctatccgctc tatatgattc cagtgcacat agtcgaataa
    17161 atccgtattt ccttgaaaat acgcaagatg attttatcgt caattttgtg atgggttcga
    17221 tgttcttggt tttaccggcg atttggctag gcagtatgtc gtgggctgga gtaaaaatag
    17281 gagatatagc tgccggtttt actactgatt cattagatag taaatccgca ggctctcaag
    17341 gtggtaattt agttaagaaa ggcggtaagg aaatatctgc agggtttaac aaataaaaca
    17401 ataaggtaga ggttaatctc taccttatta atttctaatc atattttctc atctttttac
    17461 aaaatagcca ccctgataga gtccatatcc aaaatatcca tcacgatatc catcaagctg
    17521 attttcgtct tgatcagcaa ttacatccca taaatcttcc ggcttactat cctcactatc
    17581 atcttcaatt tcattaaccg tgttttcgac gtggtttgga ttatatgcta cgtcatttgt
    17641 tgaaatatct tctactggtg ttccattgag aattcgcaga accgtgaatc caactaaaaa
    17701 caagggaagt cctgcaaaaa tcaccgcaaa aacgacagct tgttgtagcg gttttggtaa
    17761 aaatgcggta cgttgtttga taaatttaac cggcttagcg agctgctttc cgaaatcgat
    17821 aaatttcata gtatctttcc taagataaaa ggttattgtt tttggcgact actataaatt
    17881 actttat
//
LOCUS       DANLVT010000045        17552 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.045, whole genome shotgun sequence.
ACCESSION   DANLVT010000045 DANLVT010000000
VERSION     DANLVT010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17552)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17552)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17552
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.045"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            126..854
                     /gene="fabG"
                     /locus_tag="PXC99_001268"
     CDS             126..854
                     /gene="fabG"
                     /locus_tag="PXC99_001268"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HDL5417725.1"
                     /translation="MNNTVLITGSSRGIGKAIALTLAQQGFDIVVHCRSRVEEAEAVA
                     QAVRNLGKNARVLQFDVADREKVRSILEADVEQHGAYYGVVLNAGLTRDNAFPALTDE
                     DWDSVLRTNLDGFYNVLHPIMMPMIRRRKAGRIVCITSVSGLIGNRGQVNYSASKAGI
                     IGAAKALAIELAKRKITVNCVAPGLIDTDILDENVPIEEILKMIPAGRMGDPDEVAHA
                     VAFLMDEKATYITRQVIAVNGGLC"
     gene            917..2062
                     /locus_tag="PXC99_001269"
     CDS             917..2062
                     /locus_tag="PXC99_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
                     /protein_id="HDL5417726.1"
                     /translation="MKRVVITGIGVVTAFGKEWAEIHGYQPPKHWNRKQLRSLGRVSQ
                     FVVEASERALAQAGLLDENGVIFDWLKDRRMGVACGSSTGSTNDIKDAAELLMTGKSD
                     GFNANTYVRMMPHTTAANIGIFFGLTGRIIPTSSACSSGSQGIGYAYEAIKYGMIPMM
                     LAGGGEEFCASKVYVFDSLYAASRRNDNPKGTPRPYDKDRDGLVIGEGAGMFVLEELE
                     HALARGANIIAEVVGYGANSDGSHVTRPQATTMQRCMELALKDAGIQPNQVGYVNGHG
                     TATEQGDIAETQATTAVFGKIPLSSQKSYLGHTLGACGALESWFSIEMMRDGWFAPTL
                     NLENVDERCGDLDYLQGDGREIHTDYVMNNNFAFGGVNTSLIFKRWK"
     gene            2076..2981
                     /locus_tag="PXC99_001270"
                     /pseudo
     CDS             2076..2981
                     /locus_tag="PXC99_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251927.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dialkylresorcinol condensing enzyme"
     gene            3004..4146
                     /locus_tag="PXC99_001271"
     CDS             3004..4146
                     /locus_tag="PXC99_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HDL5417727.1"
                     /translation="MLSNVYITNTSAFLPNAPVSNDAMEAVLGMVGETPSRVRKMILR
                     SNGIQHRYYAIDPITRQATHSSTELAVQAVKKLGNSATSATCLAVGTSYPDQIMPGQG
                     VMVHGLLDAEPMEVLTTAGVCVAGMAAMKHAYNAVRIGEHRAAIATASETASAIMRSE
                     HFRAEIDHKKLDDARPEIGFEKDFLRWMLSDGAGAVLLANQPNEKGLSLKIHWIDLVS
                     YANEMPVCMYAGAEFIDGNYTGWKAMSEAQRAECSAMAVKQDVKLLNENIVKYTVEKA
                     LERIIPKYKLNAEEIDYFLPHYSSGSFRDKLLEGLQRINFLIPQEKWFTNLTTKGNTG
                     SASIYIMLDEFIRTHDLKQGQKILCYVPESGRFSSCFMLLEAVVNS"
     gene            4195..4410
                     /locus_tag="PXC99_001272"
     CDS             4195..4410
                     /locus_tag="PXC99_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDL5417728.1"
                     /translation="MDINDIPQDNSKIFNGERKVIYARNPQPEIRQMISSILACYAWD
                     ENNPFVAKSDARLKALAEVVGKAEIGD"
     gene            4691..5182
                     /gene="rplJ"
                     /locus_tag="PXC99_001273"
     CDS             4691..5182
                     /gene="rplJ"
                     /locus_tag="PXC99_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HDL5417729.1"
                     /translation="MALNLQDKQAIVAEVNEAAKGALSAVVADSRGVTVEKMTELRKA
                     AREAGVTMQVVRNTLLRRAVEGTEFECLTDTFTGPTLIAFSNEHPGAAARLFTEFAKT
                     NKEFELKGAAFEGKKQDVAFLATLPTYEEAIARLMGTMKEAAAGKLVRTLAALRDQME
                     AAA"
     gene            5241..5609
                     /gene="rplL"
                     /locus_tag="PXC99_001274"
     CDS             5241..5609
                     /gene="rplL"
                     /locus_tag="PXC99_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HDL5417730.1"
                     /translation="MSLTNEQIIEAIASKSVSEIVELITAMEEKFGVSAAAAVAAAPA
                     AGAAAAEEKTEFDVVLAEAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGISK
                     AEAEALKKELEEAGAKVEIK"
     gene            complement(5716..6546)
                     /locus_tag="PXC99_001275"
     CDS             complement(5716..6546)
                     /locus_tag="PXC99_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDL5417731.1"
                     /translation="MVQKPLNHYLEMQEHFLYVPYLHHHRRIRVLLPKDYHNEGWERY
                     PVLYMHDGQNVFYSKESYSGHSWKIIPTIKSHQELPKMIIVGIDNAGANRLNEYGPWK
                     TTTGSTPETRNAGGLGEEYAKWVVETVKPFIDIHYRTKPQQEHTLLAGSSMGGIITAY
                     MGSRYPHIFGHLGVFSLASWFSEPDFLRFTHQYPLQPNTKVFIQVGTNEGDEIDSHFI
                     SNTNQTYIDCSLNYYQALIRIGVPLDNIRLRIMANEIHHEMHWADHFVEFLHFSLLRK
                     "
     gene            6772..8313
                     /locus_tag="PXC99_001276"
     CDS             6772..8313
                     /locus_tag="PXC99_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjjI family glycine radical enzyme"
                     /protein_id="HDL5417732.1"
                     /translation="MQASLQDILEVVKAKNLTYQQKLMSLGNIAERLFNPIELLGYTE
                     EEWEHIENQMICDLNEGYAIYRPRYILPDYNVYMQKGCQFLDLPPPTNLDEALDGLLI
                     LYSHVPSITTFPVYIGRLDQLLEPFITDEEQDYIKIKRFLNHIDKTISDSFCHANIGP
                     NDTKAGRLILKAVIELENITPNMTIRYDKTKTSREFAELAAKACLLVSKPSFANDAYY
                     IQDLGEEYGIASCYNALPECGGAYTLTRLRLGTIGRACASVEQMVNEMLPKVAKLALS
                     TMDKRHKFLVEESNFFESSFLVQEGFIKRTNFTSMIAIVGLADAVNHLLKQEGLNETF
                     GQSKRGDEIATLIMDKLQAVNDAHKGLYVERTNNQYLLHAQVGANNHAEDKMNTPAHR
                     IRVGEEPTLLAHLKQSAPFHKYFPSGTGDLFAFDQTYTDHLDAVVDIIDGSFAQGYRY
                     ITTYLKNTDLIRVTGYLVKKSEVERYRKGEAVLRDTTWYGSGTDDCAKVFDRQLRDEE
                     NVNAG"
     gene            8316..9104
                     /locus_tag="PXC99_001277"
     CDS             8316..9104
                     /locus_tag="PXC99_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S cluster-binding domain-containing
                     protein"
                     /protein_id="HDL5417733.1"
                     /translation="MAALSEIFVPLHRIIPFSNVEGQGNRTSIFLQGCKLNCLYCHNP
                     ETIPRYSKEAKQVSLQYLYDQVMEAVPFIRGVTISGGEPTIHHKKLVPLFEALREQGL
                     TCYLDSSGFFDFEATEPLINVTDKFLFDLKGDGAGLQTLCFDRKNQAGKVPEQALPNV
                     NHIKPENLARNLQNLAKLLPLDKVEEVRLVYLNEFYNAHHLLEKVADLLKPYPDVLLK
                     IIRVHTKGARDETGLARFVPTIEQTDELAAFAKRHGIQKVITIY"
     gene            9117..10374
                     /locus_tag="PXC99_001278"
                     /pseudo
     CDS             9117..10374
                     /locus_tag="PXC99_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005760733.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
     gene            complement(10453..12462)
                     /locus_tag="PXC99_001279"
     CDS             complement(10453..12462)
                     /locus_tag="PXC99_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5417734.1"
                     /translation="MSAENMPSVIRFEQAVAKKDYESACTELLSILSKLDSNFGGISN
                     IELNMPEQIENLENDKAIYFCTRMAVAITRLFEDPALEISEHGAMRFLTLQRWIALIF
                     ASSPYVNADHILRTYNRNKESANPNTVDLDATLQALIKFCILYLPESNILLNLDAAWN
                     ASSDLTASLCFALQSPRFIGTSSAFAKRAAILQWFPEKLAQIENLNKLPSAISHDVYM
                     HCSYDIEANKHNVKRSLNAVIRRHLLSVGWEDRKIEQLGTRNNKPVMVVLLEHFHSSH
                     SIYRTHSTSMVAAREHFHLIGLGSDAVDEMGQQVFDEFHLLPQDGSLFDRLSFLKDIC
                     DKNNPAVFYMPSIGMDLTTIFASNTRLAPIQAVALGHPATTHSDFIEYVIVEDDYVGS
                     ESCFSEQLLRLPKDALPYVPSALAPQNVVYNLRENPEVIHIGIASTTMKLNPYFLEAL
                     KAIRDRAKVKTHFHFALGQSSGITHPYVERFIKSYLGNDATAHPHSPYDEYLNILHNC
                     DMMLNPFPFGNTNGIIDMVTLGLVGVCKTGPEVHEHIDEGLFKRLGLPNWLITQTAEE
                     YVTQAIRLAENHEERLAIRRDIIENNKLQTLFSGDPRPMGQIFLAKVQAWLADKNSKN
                     AEVEVKTKKVRKAATASQSAKKQTTSKTQTAKAEKDNTAKTETKS"
     gene            complement(12472..13809)
                     /gene="rimO"
                     /locus_tag="PXC99_001280"
     CDS             complement(12472..13809)
                     /gene="rimO"
                     /locus_tag="PXC99_001280"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HDL5417735.1"
                     /translation="MSASPNIGFISLGCPKNLVDSERILTELRADGYNIIPSYENADL
                     VIVNTCGFIDSAVQESLESIGEALEANGKVIVTGCLGAKENQIREVHPKVLEITGPHS
                     YEAVMNHVHKYVPKPEFNPYTSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMR
                     GDLASRSIVQVLDEAKRLVDAGVKELLIVSQDTSAYSLDRKKEEATKTVFWNGMPIKS
                     NLITLCEQLGSMGVWVRLHYVYPYPHVDDLIPLMAAGKILPYLDIPLQHASPKILKAM
                     KRPGSIERTLERIKKWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGC
                     FKFSPVEGAVATDMPDQVPEEVKEERFHRFMQLQQEISAARLQAKIGKTVQVIIDDID
                     EEGIIGRSMADAPEIDGVVYVDNPSNQLVTVGQIISVTITHADEYDLWGILNN"
     gene            complement(13964..14656)
                     /gene="mtnN"
                     /locus_tag="PXC99_001281"
     CDS             complement(13964..14656)
                     /gene="mtnN"
                     /locus_tag="PXC99_001281"
                     /EC_number="3.2.2.16"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/S-adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HDL5417736.1"
                     /translation="MKIGIIGAMAQEIEILRQVMVEPKVTELAGCKIFEGKINNTRVA
                     LLQSGIGKVAAAIGTTLLIQLTQPDMIINTGSAGGLDPDLNVGDILISTEVRYHDVDV
                     TAFGYEIGQLPANPPTFSPNEQLVELAQKEAKKAGYNVVSGLICSGDAFINGNDKINQ
                     IRQNFPNVVAVEMEAAAIAQVCHGFNLPFVIVRAVSDVADKESHLSFEEFLPLAAEKS
                     STIVLAMLNNID"
     gene            complement(14714..14935)
                     /locus_tag="PXC99_001282"
     CDS             complement(14714..14935)
                     /locus_tag="PXC99_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SlyX family protein"
                     /protein_id="HDL5417737.1"
                     /translation="MDNNYTLSAKITELETKVAFQELIIEELNQALIEQQFAIDKLQT
                     QIRHIAEKLKGAQLSQVASQAEETPPPHY"
     gene            15023..15748
                     /gene="fkpA"
                     /locus_tag="PXC99_001283"
     CDS             15023..15748
                     /gene="fkpA"
                     /locus_tag="PXC99_001283"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL5417738.1"
                     /translation="MLKTKLSLFTLIVGTLFSTNVMAEEKADPKFVDDSSYAVGVLMG
                     KNINGVIESQKDIFTYNQDKILAGVQDTLKKTGKLTDEDLQKQLKSLDAYLSAKEAKI
                     NEEKTKATVAAGDKFRADYKKQSGVKETASGLLYKIEKAGEGNSPKAEDTVKVHYKGT
                     LTDGTVFDSSYDRGEPIEFQLNQLIPGWIEAIPMLKKGGKMEIVVPPALAYGDRAAGK
                     IPANSTLKFEIELLDFKAADAKK"
     gene            15845..16501
                     /locus_tag="PXC99_001284"
     CDS             15845..16501
                     /locus_tag="PXC99_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5417739.1"
                     /translation="MTKKFTPFSDEDHAILASYFPMVDGIAALIGEHCEIVLHSLEFL
                     EHSAIYIANGHNTNRKIGSPITDRALKSLHHMATDSVSKPYFTKAKGGVLMKSITIAI
                     RNGKQHVIGLLCININLEVPTSQFLNSFIAPVDTASEVTFASSVEDLVSQTIQTTIDD
                     VMADRQISNNNKNRQIVISLFEKGIFDIKDSINQVAEKLDISRHTVYLYIRQIKQDND
                     "
     gene            16501..16878
                     /gene="tusD"
                     /locus_tag="PXC99_001285"
     CDS             16501..16878
                     /gene="tusD"
                     /locus_tag="PXC99_001285"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusD"
                     /protein_id="HDL5417740.1"
                     /translation="MDYVLAIKSPVYGSQGAFLAYQVAEELLKANHTICQIFFFQEGV
                     SNANALVNPASDEVNLVEMWKKLAKLHRLPLHLCIAAAQRRGVVDEQISANATHNLAE
                     GFTLAGLGEFSQAVLKADRLLTF"
     gene            16880..17251
                     /gene="tusC"
                     /locus_tag="PXC99_001286"
     CDS             16880..17251
                     /gene="tusC"
                     /locus_tag="PXC99_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusC"
                     /protein_id="HDL5417741.1"
                     /translation="MKKYKLAFLFTQPPFGSAVSREGLDALLAASAFCDEQEIAILFI
                     NDGVFNLIADQQPEKLLQKDHISTFKLLELYDLTECFICQESVSLRGLDNADWLLRML
                     QFKTHAEMIALLNQAEKVMTF"
     gene            17261..17536
                     /gene="tusB"
                     /locus_tag="PXC99_001287"
     CDS             17261..17536
                     /gene="tusB"
                     /locus_tag="PXC99_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusB"
                     /protein_id="HDL5417742.1"
                     /translation="MLYTLSKANYDEETLNFFFSHLSENDAVVLWQDGVLQAVKSPQF
                     FAKLPRCYLLAQDVQARGLQEKLTAFQCISLSELVKLTAVYFPQVAL"
BASE COUNT         5104 a         3540 c         3872 g         5036 t
ORIGIN      
        1 gagtaaagaa ttatctcgta gaatattaaa aagtttagaa caaaaaaata ttctcacttg
       61 gcacggctta agtccaaaag atccaaccca atactacaca ctcaagagat agtaggaaat
      121 ataagatgaa taatacagtt ctcatcaccg gctcaagccg tggtatcggt aaagcgattg
      181 ctttaaccct tgcacaacaa gggtttgata ttgtggtaca ttgccgttct cgtgtggaag
      241 aagcggaagc ggtggcacaa gcggtcagaa atctcggaaa aaatgccaga gtgttacagt
      301 ttgatgtggc ggatcgtgaa aaagtgcggt cgattttaga ggcagatgtg gaacaacatg
      361 gtgcctatta cggcgtggtg ctaaatgcag ggcttacccg tgataacgcc tttcctgctt
      421 taaccgatga ggattgggat agcgtgttgc gtaccaattt agacggtttt tataatgtcc
      481 tgcacccgat tatgatgccg atgatccgtc gccgtaaagc aggcaggatt gtctgtatca
      541 cctcggtttc cggcttgatc ggcaaccgtg ggcaggtcaa ttacagcgct tcaaaagccg
      601 gcattattgg tgcggcaaaa gcactcgcca tcgagcttgc caaacgtaaa atcacggtaa
      661 actgcgtggc gcccggcttg attgataccg atattctgga cgaaaacgtc ccaatcgaag
      721 aaattctcaa aatgatcccc gcaggacgaa tgggcgatcc tgatgaagtg gcacacgccg
      781 ttgcgttttt aatggatgaa aaagccactt acatcacacg ccaagtcatc gctgtgaatg
      841 gtgggttgtg ttaactttag gataataatt cgtaggggcg gatccagtac ccgcccgaag
      901 ccaaaaagag ataaatatga aacgagtcgt catcaccgga attggtgtgg ttaccgcttt
      961 tggtaaagag tgggcggaaa ttcacggcta tcaaccgccg aaacattgga accgcaagca
     1021 gttgcgcagc cttgggcgag tgtcgcaatt tgtggtggag gccagcgagc gggctttagc
     1081 acaggccggt ttgttggacg aaaacggcgt gattttcgac tggctaaaag acaggcgaat
     1141 gggcgtggcg tgtggctcgt ccacaggctc taccaatgac atcaaagatg ccgccgaatt
     1201 gctgatgacc ggcaaatcgg acggtttcaa tgccaacacc tatgtgcgaa tgatgcccca
     1261 caccaccgct gccaatattg gcattttctt cgggctgaca gggcggatta tcccgacttc
     1321 cagcgcttgc tcctcgggca gccaaggtat cggttacgct tacgaagcca ttaaatacgg
     1381 tatgatcccg atgatgcttg ccggcggtgg agaagaattt tgtgcctcca aagtctatgt
     1441 cttcgacagc ctctatgctg ccagccgccg caacgacaac ccaaaaggca cgccacgccc
     1501 ctatgacaaa gaccgagacg gcttagtgat cggcgaggga gcgggaatgt tcgtattgga
     1561 agagctggaa cacgcgttag cacgaggggc aaacattatc gccgaagtgg tgggctacgg
     1621 tgcaaacagt gacggttccc acgtcacccg cccacaagcc accacaatgc aacgctgtat
     1681 ggaacttgcc cttaaagatg ccggtattca accgaaccaa gtcggctatg taaacggaca
     1741 cggcacggcc accgagcagg gcgacattgc cgaaactcaa gccaccacag cggtgttcgg
     1801 caaaattccg ctcagctcgc aaaaaagcta cttagggcat acgctcggtg cgtgtggtgc
     1861 attggaaagc tggttcagca ttgaaatgat gcgagacggc tggttcgccc caacactgaa
     1921 tttagaaaat gtcgatgaac gctgtggcga cttggattac cttcaaggtg acggacggga
     1981 aatccacacc gattatgtga tgaacaacaa tttcgccttc ggcggtgtga atacctcatt
     2041 gatttttaaa cgttggaaat aaccgttttc aaataatgaa aaagatatta ttagtttatt
     2101 actcccaaac cgggcaactc acccatttgg cagaaaattt tgtacaatcg cttgaacaag
     2161 cgggcgtttt tgtggaaaaa ctcgcaatca aaccgcaaca ggaatacccg tttccgtggc
     2221 ggtttatgcg tttttttaac accttccccg aaaccgtcca cctcacaccg ccgccgattg
     2281 agcctctgcc ctttcagcac gaaatatacg atttggtgat catcgcctat tccgtgtggt
     2341 ttctctcccc cagccagccg attaccgctt ttttacagag tgaacaggca aaaaagtgtt
     2401 gaaggatacg cccgtcatca cgctgatcgg ctgtcgcaat atgtggctga tggcgcagga
     2461 aaaagtgaaa aaactgcttg ccgagagtga ggcgaagctc attggcaacg tggtcaaagt
     2521 ggatcaatct aacgactggg cgagttttat caccacaccg ctttggatgc tgaccggcaa
     2581 gaaaaaaaat cggcaagctg ccgagcgctg gcattgccga aagcgaaatg gaagatgtaa
     2641 aacgcttcgg ggcaaaactt ttgcacattt ttagccaaaa ccaaccgctt gacagcaccc
     2701 ttttccgcca aatgcaagcg gtcaaaattg acgaaaaatt gatgatgagc gaaaaagtcg
     2761 gtgcgagaag tttccacctt tggggcaaat tactgatcaa gtgcggtcaa atttcaccgc
     2821 acttacgcca agcggtactc tatttttaca tcctcttttt agtgacgtta attttaaccg
     2881 tcgtcccgat ttcaacggtg attaaacggc tattacgccc actgctgaaa gaaaaattag
     2941 aaaaacaaaa acggtatttt gccgagcctt cgggcgagta aacgtaccct acacggaaac
     3001 tttatgctat ctaacgtcta tatcaccaac acctccgcct ttttacccaa cgcccctgtg
     3061 tccaacgatg caatggaagc ggtgttggga atggtggggg aaacgccttc ccgagtgcgg
     3121 aagatgattt tgcgttctaa cggtattcaa catcgttatt atgccattga cccgataacc
     3181 cgccaagcga ctcacagcag taccgagttg gcggtgcaag cggtcaaaaa attgggaaat
     3241 tctgcaacat cagcgacttg cttggcggtg gggacatctt accccgacca aattatgccg
     3301 gggcaggggg tgatggtaca cggcttgctt gatgccgaac cgatggaagt gctgaccact
     3361 gccggtgtgt gcgtggcggg aatggcagcg atgaagcacg cctataatgc cgtacgcatc
     3421 ggtgagcatc gtgctgcgat tgcaacggct tccgaaaccg cctccgccat tatgcgcagt
     3481 gaacatttcc gtgccgaaat cgatcataaa aaactggacg atgctcgccc tgagatcggt
     3541 tttgagaaag atttcctgcg ttggatgctc tcagacggtg caggggcggt attgcttgcc
     3601 aatcagccga acgaaaaagg gttgagcctc aaaattcact ggatcgatct ggtctcttac
     3661 gctaacgaaa tgccggtttg tatgtacgcc ggtgcggaat ttattgacgg caactacacc
     3721 ggctggaaag caatgagcga agcccaacgt gccgaatgct cggcaatggc ggtgaaacaa
     3781 gatgtcaaac tgctcaacga aaacatcgtc aaatacacgg tggaaaaagc attggagcgg
     3841 attatcccga aatacaagct caacgctgaa gagattgact acttcctgcc gcactactcg
     3901 tccggttcct tccgagataa attattggaa ggtttacagc ggatcaattt cctgatccca
     3961 caggaaaaat ggttcaccaa cctgactacc aaaggcaaca ctgggtcagc ctcgatctac
     4021 attatgctcg atgaatttat ccgcacccac gatctcaaac agggacaaaa aatcctctgc
     4081 tatgtgccgg aaagcggacg tttttcgtct tgttttatgc ttttggaagc ggtggtaaat
     4141 tcgtaaaatc gtagggacgg gggctattcc cgtccaacaa tcatcggaaa acgtatggac
     4201 atcaatgaca ttccccaaga caacagcaaa atcttcaacg gcgaacgcaa agtgatctac
     4261 gcccgcaatc cgcaaccaga aatccgccaa atgatctcct ctattctcgc ttgctacgct
     4321 tgggacgaaa acaacccgtt tgtagcgaag tctgatgcac ggttgaaggc attggcggaa
     4381 gttgttggta aagcagaaat tggcgattaa gtttgatttt gtgctttaca gggtcgcaga
     4441 ttatctgtat aatttgcgac cttaacttgc gagagcaagc tgatggtgct tagcctatct
     4501 aagccccgtc taagactgta ggggtgaaaa cttaataatc ctacatagat ggtgaacaga
     4561 cagaattctc tgcttctgga caccttaggc tcaaagaaga ttgcagtttg tagcaatgca
     4621 agcggtaata tttttgggat tttttgtaaa ttctgcttga aaaggcagag tgtatcagga
     4681 gctaaaacca atggcattaa atcttcaaga caaacaagcg attgttgctg aagtaaacga
     4741 agctgccaaa ggtgcacttt cagctgttgt tgcggattct cgcggtgtaa cagttgaaaa
     4801 aatgactgag ttacgtaaag cagctcgtga agctggtgtg acaatgcaag ttgtacgtaa
     4861 tactttatta cgtcgtgcag tggaaggcac cgagttcgag tgcttaacag atacgtttac
     4921 cggtccaact cttatcgcat tctcaaatga acacccaggt gcagcagcac gtttattcac
     4981 tgaatttgcg aaaacaaaca aagagtttga acttaaaggt gcagcctttg aaggtaaaaa
     5041 acaagatgtt gcattcttag caaccttacc aacttacgaa gaagcaattg cacgtttaat
     5101 gggcacaatg aaagaagctg cggcaggcaa acttgttcgc actcttgcag cattacgcga
     5161 tcaaatggaa gcagcagctt aattttaagc actcttcttt attcgtttaa caacttattt
     5221 tactttagga atcgattgtt atgtcattaa ctaacgaaca aatcattgaa gcgattgctt
     5281 ctaaatcagt atcagaaatc gttgaattaa tcactgcgat ggaagaaaaa ttcggtgttt
     5341 cagcagcggc agcagtagca gcagctccag cagcaggcgc agcggcagca gaagagaaaa
     5401 ctgagtttga tgtagtatta gcagaagctg gtgcaaacaa agttgctgta atcaaagcag
     5461 tacgtggtgc aacaggttta ggcttaaaag aagctaaaga cttagtagaa tcagctccag
     5521 ctgcattaaa agaaggcatc tctaaagcag aagctgaagc acttaagaaa gaattagaag
     5581 aagctggcgc gaaagtagaa atcaaataat ttttgattta ttttgtcaga acttcaagtt
     5641 caacaaaccc cgatggaaac atcggggttt tgttttttca gaattgtgta atgtagatat
     5701 gattaccttt atccattact tgcgcagcag tgaaaaatgt aaaaattcca caaagtgatc
     5761 tgcccagtgc atttcgtggt ggatttcatt tgccataatc cgcaggcgga tattgtctaa
     5821 cggcacgcca atccgaatca gtgcttggta gtaattgagc gaacaatcaa tataggtttg
     5881 gttcgtatta gagataaagt gcgaatcgat ttcatcgcct tcgttagtgc caacctgaat
     5941 aaacactttg gtattgggtt gtaacggata ttggtgcgta aaacgcagaa aatccggctc
     6001 actaaaccaa gaggcaagcg aaaacacccc taaatgcccg aaaatatgtg ggtagcggct
     6061 gcccatataa gcggtgataa tgccacccat tgaactgcct gccaataagg tatgttcttg
     6121 ctgaggcttg gtgcgatagt gaatatcaat aaagggttta accgtttcca ccacccattt
     6181 ggcatattcc tcccctaagc ctccggcatt tcgggtttca ggggttgagc cggtggttgt
     6241 tttccacggg ccgtattcat ttaagcgatt agctcctgcg ttatcaatgc cgacaataat
     6301 catcttcggt aattcttggt gtgatttaat ggttggaata attttccaag aatgccccga
     6361 ataagactct ttgctgtaaa acacattttg cccgtcgtgc atatataaca ccggataacg
     6421 ttcccaacct tcgttgtgat aatccttcgg caatagtacc cgaatgcggc ggtgatggtg
     6481 taaataggga acatataaaa aatgctcctg catttctaaa tagtggttaa gtggtttttg
     6541 taccatcagt ctgtcctttt gcttaaattg tggcgtattt tacaccttaa tcagtctgag
     6601 ttaaaacaag cggtcagaaa aagtcaaaaa tttgcaaatt gctgttacct aacgcaatcg
     6661 gttgccttat gcttttgagg aatataaaag agaaactgtg atctaagtca cagcaatttt
     6721 tattcggttt gactaaaatc cgaactatca cttaatagag aggaaaatgt tatgcaggct
     6781 tcattacaag atattcttga ggtagtaaaa gcaaaaaatc tcacttatca gcaaaaattg
     6841 atgagtttag gcaatattgc tgagcggtta tttaacccga ttgaactact tggctacact
     6901 gaagaagagt gggaacacat tgaaaatcag atgatttgcg atttaaatga aggttatgcg
     6961 atttatcgcc cacgttatat tttgcctgat tataatgtgt atatgcaaaa aggttgccaa
     7021 ttcttagatt tacctccgcc aaccaattta gatgaagcct tagacggctt gttaattctg
     7081 tattcacacg ttccgtccat tactactttt ccggtgtata tcgggcgttt agaccaactg
     7141 ttagaaccgt ttataaccga tgaagagcaa gattacatta aaatcaagcg tttcttaaat
     7201 catatcgata aaaccatttc cgattctttc tgccacgcta acatcgggcc gaatgacacc
     7261 aaagccggtc gtttaatctt aaaagcggtg attgagcttg aaaacattac accgaatatg
     7321 acgattcgtt atgataaaac caaaacatcg cgtgaatttg ccgaactggc ggcgaaagcg
     7381 tgcttgttgg tgtccaaacc gtcttttgct aatgatgcct actacattca agatttaggc
     7441 gaagaatacg gaattgcaag ctgttataac gccttaccgg aatgtggcgg tgcttacact
     7501 ctgacccgcc tgcgtttagg tactatcggg cgtgcttgtg cgagtgttga acaaatggtc
     7561 aatgagatgc tgccgaaagt ggcaaaactc gccctttcca cgatggataa acggcataaa
     7621 ttcttggtgg aagaaagcaa tttctttgaa agtagcttct tggttcagga gggctttatc
     7681 aaacgtacta acttcacaag tatgattgcg attgtaggtc ttgctgatgc ggtgaatcat
     7741 ttactcaagc aagaaggttt aaatgaaacc tttgggcaaa gcaaacgtgg cgatgaaatt
     7801 gcgacgctga ttatggataa gctccaagca gtaaatgacg ctcataaagg gctgtatgtt
     7861 gaacgaacca ataaccaata tctgttacac gctcaagtgg gggcaaataa ccacgctgaa
     7921 gacaaaatga acacgccggc acaccgcatt cgtgtgggcg aagagccaac cttattggca
     7981 cacttaaaac agtctgctcc tttccataaa tatttcccat ccggtacggg ggatttattc
     8041 gcctttgacc aaacctacac tgatcattta gatgcggtgg tggatattat tgacggctcg
     8101 ttcgcccaag gttatcgcta cattaccact tacctgaaaa atactgattt gattcgagtg
     8161 acaggctact tggtgaaaaa aagcgaggtt gaacgttatc gcaaaggcga agcggtattg
     8221 cgtgatacca cttggtatgg ttcaggcacc gatgattgtg cgaaagtgtt cgaccgccag
     8281 ctgcgtgatg aagaaaatgt gaatgcaggg taacaatggc tgcactttct gagatttttg
     8341 tgccgttaca ccgcattatc cccttctcga atgtagaagg gcagggcaat cgtaccagca
     8401 tttttctaca aggttgcaag ctgaattgcc tgtattgcca taacccggaa accattccac
     8461 gttatagcaa ggaagcaaaa caggttagct tgcaatactt gtacgatcaa gtgatggagg
     8521 cagttccctt tattcgagga gtcactattt cgggtggaga gccaaccatt catcataaaa
     8581 aattagtgcc actgttcgag gcgttgcgtg agcaagggct aacctgttat ttagacagca
     8641 gcggcttttt tgattttgag gcaacagagc cgttaattaa tgttaccgat aaatttctgt
     8701 tcgatctcaa aggagatggg gcgggcttac aaacgctatg ctttgatcgg aaaaaccaag
     8761 ccggcaaagt gcctgaacag gctcttccaa acgtgaatca tattaaacct gaaaacttgg
     8821 ctcgcaattt gcaaaattta gccaaattat taccgcttga taaggtggaa gaagtacgtt
     8881 tggtttacct caatgagttt tataacgccc accatttgct cgaaaaagtg gctgacctac
     8941 ttaaacctta cccagatgta ctacttaaaa ttattcgggt acacaccaaa ggagcgagag
     9001 atgaaacagg cttggctcgt tttgtaccca ctatcgagca aaccgatgaa ctggcagcat
     9061 ttgcaaaacg gcacggtatt caaaaagtta ttactattta ctaatggaga cttacgatgg
     9121 atatactaat tagcataatt ggtgtttttg tgttattagg cttaggtgtt ttattatcaa
     9181 ataatcgcaa agccattaaa tttcgcacaa ttttgggcgc tttggcgatt caaattggtt
     9241 ttgccgctct tattctttac tttccagcgg gaagaaatgc attgctagct actgcaaatt
     9301 gtgtgagcaa tattattaat tatggtaacg aaggtattag ctttgtgttt ggcaatttag
     9361 cgaatccgag taatagcagc attggttttg tgtttgcggt taaagtattg cctattatta
     9421 tcttcttctc tgcgttaatt tcaatgcttt actaccttgg tgtgatgcaa tgggtgatta
     9481 aaattattgg tggagcatta caaaaaacac taggcacttc caaggcagaa tcaatgtcag
     9541 cggcagctaa ttatttttgt tggtcagaca gaagctcctc tagttgtaaa accatacatt
     9601 agccgtatga cagagtcaga attatttgcc attatggttg gtggaactgc ttcaattgct
     9661 ggttccgtta tggctggtta tgccggaatg ggcgttcctt taacttatct tattgcggcc
     9721 tcctttatgg ctgcaccagc tgggttacta tttgctaaat taatgtatcc tcaaacggaa
     9781 accttggaga gtaaagcaga tgacaatgtt gaagttgaaa agccaaataa cgtggttgag
     9841 gccctagcta atggtgctag tgcaggtgtt actttggcta ttaatgtcgg tgctatgtta
     9901 atagcattta ttgcagtgat cgctttatta aatggcttta ttggtggcat tggtaattgg
     9961 tttggttatg aggggctaac cttacaaatt ttattaggtt atttattcca accacttgct
    10021 ttcttaatcg gtgtgccgtg gcaagatgcc gatattgcag gtcaaatgat aggtatgaaa
    10081 cttgctgtta atgaatttgt cggatatctt gagtttgcta aatatctaca gcctgatgct
    10141 gtggtgcaat taagcgataa aactaaggca ataattactt ttgctttatg tggttttgca
    10201 aactttagag caattgcggt attgattagt ggtatcggaa gtatggcacc aagtcggcgt
    10261 tcagatattg ctcgtttagg tttaaaagca gtgattggcg gcacattggc gaacttaatg
    10321 agtgcaacta tagcgggttt ctttattggt ttaagtggtg ccacattagg ttgatacaag
    10381 cggttaaatt gactcacttt tttgcaaaaa gcccaagtaa gttaaatgac tacttgggct
    10441 ttgtttaatg aactagctct tagtttcggt ttttgctgtg ttatcctttt ccgctttggc
    10501 tgtctgtgtt ttcgaagttg tctgtttttt tgcggattgg ctagcagtag ctgcttttct
    10561 tactttcttt gttttaactt ctacttccgc atttttagag tttttatccg ctaaccatgc
    10621 ctgcacttta gctaagaata tttgtcccat cgggcgagga tcgccagaaa ataatgtttg
    10681 taatttatta ttttcaataa tgtcgcgtct aattgctaag cgttcttcgt ggttttccgc
    10741 taaacgaata gcttgagtaa cgtattcctc tgctgtttgg gtaattaacc aattaggtag
    10801 cccgaggcgc ttaaataaac cttcatcaat atgttcatga acttcagggc ctgttttaca
    10861 gacaccaact aaaccaagcg taaccatatc gataatgccg tttgtatttc caaatgggaa
    10921 tggatttagc atcatatcgc aattatgtag aatatttaga tattcatcat atggcgaatg
    10981 tgggtgtgcg gttgcatcat ttcctaaata gcttttgata aaacgttcca cataaggatg
    11041 cgtaattcca ctagattgcc ctaatgcaaa atggaaatga gtttttacct tcgccctatc
    11101 acgaatggct tttaatgcct ctaagaaata tgggtttaat ttcatagtgg ttgatgcaat
    11161 tccgatatgg ataacctctg gattttcacg taggttatag accacatttt gaggcgctaa
    11221 tgcggaaggc acatagggta gcgcatcttt tggaagacgt aataattgtt cactaaagca
    11281 gctttcggaa ccaacatagt catcttctac gatgacatat tcaataaaat cagagtgtgt
    11341 agttgccgga tgacctagcg caacagcttg aattggtgct aggcgagtgt tactagcgaa
    11401 aatagtggtt aaatccattc caatgctagg catatagaat acggctggat tatttttatc
    11461 acagatatct tttaaaaagc ttaagcggtc aaatagtgag ccatcttgtg gtaataaatg
    11521 aaattcgtcg aatacctgtt gccccatttc atctacagca tcactgccta gcccaataag
    11581 atggaaatgt tcgcgtgcag caaccattga ggttgaatga gtacgataaa tagaatgtga
    11641 tgaatggaaa tgctccaata atactaccat gacaggttta ttatttctgg taccaagctg
    11701 ttcaattttt ctatcttccc aaccgacaga aagtaaatga cgacgaatta cagcatttaa
    11761 cgaccgtttt acattatgtt tatttgcttc aatatcataa ctgcaatgca tataaacatc
    11821 gtgtgaaatg gcgctcggta gcttgttcaa gttttcaatt tgcgctaatt tttctgggaa
    11881 ccattgcaaa atagccgcgc gttttgcaaa agcagaggat gtaccaataa atctaggtga
    11941 ttggagtgca aaacaaagtg atgcggtgag atctgatgaa gcattccatg cagcatctag
    12001 attcaataaa atattagatt ccggtaagta taaaatacag aacttaatta gtgcttgtaa
    12061 tgtggcatct aaatcaaccg tatttggatt agcagattct ttatttctat tgtaagtacg
    12121 caagatatgg tctgcgttta cgtatggaga actggcaaaa attaatgcta tccagcgttg
    12181 taatgtcaga aaacgcatag caccgtgttc ggagatctct aatgcaggat cttcaaacaa
    12241 gcgagtaatc gctaccgcca ttcgagtaca gaaatagata gctttatcat tttctaaatt
    12301 ttcaatctgc tctggcatat tcaattcaat attggaaatg ccaccaaaat tactatctaa
    12361 ttttgaaagg atagacagta gctcggtaca agccgattca taatcttttt tcgcgaccgc
    12421 ctgctcaaaa cggatgacgc taggcatatt ttctgctgac ataatgtatc cttagttgtt
    12481 taaaattccc cacagatcat actcatctgc atgtgtaatg gttactgaaa taatttgccc
    12541 tactgtcact aattggtttg aaggattatc tacatagact acaccgtcaa tttccggtgc
    12601 atctgccatt gagcgaccga taatgccttc ttcgtcaatg tcatcaataa ttacttgtac
    12661 ggttttgccg atttttgctt gtaagcgagc agcggaaatt tcttgttgta gttgcataaa
    12721 acggtggaaa cgttcctctt ttacttcttc cggaacttga tccggcatat cggtagcaac
    12781 agcaccttcc actgggctga atttaaagca accaacacga tctaattgtg cttcttttaa
    12841 gaaatcgagt aatagttgga aatcttcttc tgtttccccc gggaagccga caataaaggt
    12901 agaacgcaga gttaattcag ggcaaatttc acgccatttt ttaatgcgtt ctaaggttct
    12961 ttcgattgaa cccgggcgtt tcatcgcttt taagattttc gggctggcgt gttggagtgg
    13021 aatatccaaa tacggcaaaa ttttgccggc agccataagc ggaattaaat catctacgtg
    13081 tgggtatggg taaacatagt gcaaacgcac ccacacgccc attgagccta attgctcaca
    13141 tagcgtaatt aaattacttt taatcggcat accgttccag aaaacggttt tggttgcttc
    13201 ttcttttttg cgatctaacg aataggctga ggtgtcttgt gagacgatta acagctcttt
    13261 taccccggca tcaactaggc gttttgcttc atctaatact tgcacgatag aacggcttgc
    13321 taaatcgcca cgcattgaag gaataatgca gaaagtgcag cgatgatcgc agccttcgga
    13381 aattttcaaa taagcgtaat gcttcggtgt taatttaatc ccttgttttg gcactaagct
    13441 ggtgtaaggg ttaaattccg gttttggcac atatttatgg acgtggttca ttaccgcctc
    13501 atagctatgt ggccctgtaa tttccaatac tttagggtgt acctcacgaa tttggttttc
    13561 ttttgcccct aaacagccgg tgacaattac ttttccgtta gcttctaacg cttcaccaat
    13621 gctttcaaga gattcttgta ctgcggaatc aataaaaccg caggtgttta caatcacaag
    13681 atccgcattt tcataactag ggatgatgtt ataaccatcc gcacgcagtt cggtcaaaat
    13741 acgttcggaa tcaactaaat ttttagggca gcctaagctg ataaaaccaa tatttggtga
    13801 agcactcata taactctcaa taactaaaaa gaaaaatgcc tacaattttt gtctgtaggc
    13861 aaaaaactaa caagattcta caaaatcttg cccaaaatag cgataacaag cggtcaattt
    13921 ttaataaaca tttacaaact tgaaatttcg ctaacaatta aaattaatcg atattattta
    13981 gcattgctaa tacaatcgtg gaagattttt ctgcggctaa tggcagaaat tcttcaaaag
    14041 aaaggtggga ttctttgtcc gctacatccg atactgctct tacgattaca aatggaaggt
    14101 taaaaccgtg acaaacctgc gcaatggctg ctgcttccat ttcgactgca acgacattcg
    14161 ggaaattctg acgaatttga ttaatcttat cattaccgtt aataaaggca tcgccgctac
    14221 agattaagcc tgaaaccaca ttgtaaccgg cttttttcgc ttccttttga gctaattcga
    14281 ctaattgctc gtttggcgaa aatgttggcg ggtttgccgg tagttgcccg atttcataac
    14341 caaaggcggt cacatcaaca tcgtgataac gaacttcggt tgaaatcaaa atatcaccta
    14401 cgtttaaatc tggatctaat ccaccggcag agcctgtatt aataatcata tccggctggg
    14461 tgagctgtat cagtaaggta gtgccgatgg cggcagcaac tttgccgata cccgattgta
    14521 ataatgccac acgggtattg ttaattttgc cttcaaaaat tttacaacct gctaattcag
    14581 tgactttagg ttcaaccatt acttggcgta aaatctcaat ttcttgtgcc atcgcaccaa
    14641 taataccaat tttcattact ttccttctct aatgtattgt ttattttttg aaaaaaacgc
    14701 tattttaaca gcattaatag tgaggagggg gtgtttcttc tgcttgtgaa gcaacttggc
    14761 ttagttgagc ccctttcaat ttctcagcaa tatggcgaat ctgagtttgt aacttatcaa
    14821 ttgcaaattg ttgctcaata agtgcttgat ttaactcttc aataatcagc tcttggaaag
    14881 caactttagt ctccaattcg gtaatttttg ccgataatgt ataattatta tccatttttt
    14941 actaaaaaaa ggttgtgtga aaaggaatta cactttaccc tatcttaaat tttcttaaca
    15001 gttattttta taaggaaaaa ttatgttaaa aaccaaatta tcattattta ctcttattgt
    15061 tggcacactt tttagtacaa atgtgatggc agaagaaaaa gcagatccta aatttgtgga
    15121 tgattcctct tatgccgtgg gtgtattaat gggtaaaaat attaatggtg tgattgagtc
    15181 acaaaaggat atttttacct ataaccagga taaaatctta gccggtgttc aggacacctt
    15241 aaagaaaacc ggtaaattaa ccgatgaaga tttgcaaaag cagttaaaat cgttagatgc
    15301 ctatttatct gcgaaagaag caaagattaa cgaagaaaaa accaaagcaa cggtagctgc
    15361 aggcgataaa ttccgtgctg attataaaaa acagtctggc gtaaaagaaa cggcttcagg
    15421 cctgttatat aaaattgaaa aagcaggtga aggcaattca ccaaaagcgg aagatactgt
    15481 gaaggtgcat tacaaaggca ctttgactga tggcacggta tttgacagct cttacgaccg
    15541 tggtgagccg attgaatttc agttaaatca attaattccg ggttggattg aagcgattcc
    15601 tatgttgaaa aaaggcggta agatggaaat tgtagtgcca cctgcattag cttatggtga
    15661 tcgtgccgca ggcaaaattc cagcaaattc aaccttgaaa tttgaaattg aattattaga
    15721 ttttaaagca gcagatgcta agaaataatt cgttattcct taattattga agatacgtaa
    15781 gcggttagat ttattataat atttgcaaaa aatgtgataa aactaaccgc ttgtaatttg
    15841 tattatgacc aaaaaattta cgcctttttc tgacgaagat cacgccattc ttgcttctta
    15901 ctttccgatg gtagatggga ttgcggcact gattggtgag cattgcgaaa ttgtattgca
    15961 ttcgttagag tttctggaac attcggcaat ttatattgct aacggacaca atactaaccg
    16021 taaaatcggc tctccgatta ctgaccgtgc attgaaatcg ctgcatcata tggcaacgga
    16081 tagcgtctcc aaaccttatt ttaccaaggc aaaaggtggc gttttaatga agtctatcac
    16141 tattgcgatt cgtaatggta aacagcacgt tatcgggtta ctgtgcatta atattaattt
    16201 ggaagtgcct acctcacagt ttctcaattc ttttattgcc cctgtagata ccgcttcaga
    16261 agttactttt gccagttcag tagaagattt ggtttcacaa acgattcaaa cgaccattga
    16321 tgatgtgatg gcagatcgtc aaatttctaa caataataaa aatcgtcaaa ttgtgatttc
    16381 gttatttgag aaagggattt ttgatattaa agattccatt aaccaagtag cggagaagct
    16441 ggatatttca cgccatactg tgtatctcta tattcgtcaa attaagcagg acaatgatta
    16501 atggattatg tattagcgat aaaatcaccg gtttatggtt cacaaggggc atttttagcc
    16561 taccaagtgg cggaagaatt attaaaagcc aatcatacaa tttgccaaat attctttttt
    16621 caagaaggcg tgagcaatgc taatgcctta gtgaatccag caagcgatga agtgaattta
    16681 gtcgagatgt ggaaaaaatt ggctaaattg caccgcttgc ctctgcattt gtgcattgct
    16741 gctgcccagc gtagaggcgt ggtggatgag caaatctcag ctaatgcaac acataattta
    16801 gccgaaggat ttaccctagc cgggttaggc gaatttagcc aagcagtatt aaaagcggat
    16861 cgattactga ctttttaaga tgaagaaata taaacttgcc tttttattta cccagccacc
    16921 ttttggttcg gcagttagcc gtgaggggct agatgccttg cttgcagcta gtgctttttg
    16981 tgacgagcaa gagatagcta tcctctttat caatgatggc gtatttaatc tcattgccga
    17041 tcaacagccg gaaaaactct tacaaaaaga tcatatttcc accttcaaat tattggagtt
    17101 gtatgactta actgaatgtt ttatttgcca agaaagtgta agtttacgag ggctggataa
    17161 tgcagattgg ttactgcgaa tgcttcaatt taaaactcac gctgagatga tcgcattgct
    17221 caatcaagct gaaaaagtaa tgacgtttta aggaatattt atgctttata ccctttccaa
    17281 agcgaattat gatgaagaaa ccttaaactt ctttttctca catcttagtg agaacgatgc
    17341 ggttgttctg tggcaagatg gcgtgctaca agcggtcaaa agtccgcaat tttttgcaaa
    17401 attgccccgt tgctatttat tggcacaaga tgtgcaagct cgaggattgc aagagaagct
    17461 cactgcattt cagtgcattt cattatccga attagtcaaa ttaacagcgg tttattttcc
    17521 ccaggttgca ctgtaaccta gagaggatat tt
//
LOCUS       DANLVT010000046        17174 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.046, whole genome shotgun sequence.
ACCESSION   DANLVT010000046 DANLVT010000000
VERSION     DANLVT010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17174)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17174)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17174
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.046"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..296
                     /locus_tag="PXC99_001288"
     CDS             <1..296
                     /locus_tag="PXC99_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417743.1"
                     /translation="DTRYNKNGQGAVSERNIIDAKNRFKASHPYAKIISCVRGSETYV
                     TRPAKANATTKSVKEKQSQPQESSSLSSMLLGAAVTAGVGFVANKWFSKKDNT"
     gene            324..809
                     /locus_tag="PXC99_001289"
     CDS             324..809
                     /locus_tag="PXC99_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417744.1"
                     /translation="MAGLLPPYFKKKNSDHYKDAVKQFGKEQVDEVIAQCDELESWVK
                     EMPTKQLIMYVGCFHTFNKLSQSKAYVQENFPNVLENPFLFQTLSAASHNELKINRGY
                     KFKEKMLDEFYNLIELSEKDDEEYSEEEVKLPLWKKIYYVFIIFGIIMFIYRVINWLL
                     F"
     gene            1124..1705
                     /gene="rsxA"
                     /locus_tag="PXC99_001290"
     CDS             1124..1705
                     /gene="rsxA"
                     /locus_tag="PXC99_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxA"
                     /protein_id="HDL5417745.1"
                     /translation="MVDYILLVISTALINNFVLVKFLGLCPFMGVSKKVETAIGMGLA
                     TTFVLTVASLSAYLMETYLLEPLNAQFLRTLVFILVIAVIVQLTEMIVHKTSPTLYRL
                     LGIYLPLITTNCAVLGVALLNVNLANNLVESVLYGFGAAAGFSLVLVLFAALRERLAA
                     ADVPRPFQGASIALITAGLMSLAFMGFTGLVKL"
     gene            1705..2322
                     /gene="rsxB"
                     /locus_tag="PXC99_001291"
     CDS             1705..2322
                     /gene="rsxB"
                     /locus_tag="PXC99_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxB"
                     /protein_id="HDL5417746.1"
                     /translation="MLDLPIIAYILIAIAVIALIFGAVLGYSSIKLKVESDPIVDQID
                     ALLPQSQCGQCGYPGCKPYAEAIANGDVITKCVPGGQPLVVNLAELLGVEVPPMEGMA
                     EPEMKVAFVIEDLCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTNC
                     IEMRPIKPTTQSWNWKFDQDLIIPIVNTTELQRKLVTGGGKNEQS"
     gene            2309..4603
                     /gene="rsxC"
                     /locus_tag="PXC99_001292"
     CDS             2309..4603
                     /gene="rsxC"
                     /locus_tag="PXC99_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxC"
                     /protein_id="HDL5417747.1"
                     /translation="MSNPNLVIERIRQNKETGKLWDFPGGIHPMENKSQSNSKPIRTL
                     NLPKFFYVPLVQHSGWAGELLVKVGDVVLKGQPLTKGDHFRQLPVHSPTSGRVIGIEP
                     YVSAHASGLPEITVIIETDGKDKWVERQPIEDFLSLTSDQIIQKVYQYGIAGLGGAVF
                     PTATKLSLADKRCKLLVINGAECEPYITCDDRLMQDFTADLIEGIRILRYVLRPEEVV
                     IAIEDNKPHAIQALETALKGSNDMFVRAIPTKYPSGASDQLIQVLTGLEIPAGKRTIE
                     MGIVMHNVGTAFAVKRAIIDDEPLIERVVTLTGDKIRNKGNVWARLGTPIQHLLEQVD
                     YQADKRFPVFLGGPMMGFILPALQAPITKTANCLIAPDHFEYAPPEPERSCIRCSSCS
                     DACPVGLLPQQLYWFARAEDHDKSKEYHLDACIECGVCAYVCPSYIPLIQYFRQEKAK
                     IEEIEEKARKAEEAKIRFEAREARLQKERDARTARISQAAEKRREEVANAGGVDPVKA
                     ALERLKAKKAVETVQEIPAEVQVKPNGEPDNSDLMAQRRARRLAKQAEQAVEKSENVT
                     NALIGANNDLPLQSMNETASDKSVGANNYSPEAESEDPRKAAVAAALARAKAKKQAQQ
                     AVEKSENITNAVIGVNNDLPLQSMNETVSDKSVGANNHSPETESEDPRKAAVAAAIAR
                     AKAKKQAQQAVEKPEDIANAVIGVNNDLPLQSMNETTSDKSVGANNHSPKTESEDPRK
                     AAVAAAIARAKAKKAAQQEKSNNV"
     gene            4596..5231
                     /locus_tag="PXC99_001293"
     CDS             4596..5231
                     /locus_tag="PXC99_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HDL5417748.1"
                     /translation="MFSELIPALPWSFLFIQDLIGTIVFAISGAIAARQHKMDIFGMF
                     ILAFVTGVGGGTLRDMMIGSTPVFWMKQPIYVLMITLAVVITAIFRNQISRKSWQTGL
                     LVFDAIGLGVFTVIGVQKGLDFGLHPLICVALGGVTGCFGGLIRDILRNEVPIILQKE
                     VYVTASLIGGVIFVAANSVGLESDWVYLATVFTVIIIRLLAIRFNLNLPRL"
     gene            5277..6332
                     /gene="rsxD"
                     /locus_tag="PXC99_001294"
     CDS             5277..6332
                     /gene="rsxD"
                     /locus_tag="PXC99_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxD"
                     /protein_id="HDL5417749.1"
                     /translation="MFKMVSSPHTHSSNLTANFMLWVIAMMLPAFGVQLYYFGYGVLI
                     QTLLAVSLAIVIEIGIAKLRKKTTAFYLADLSGILTALILAMSIPPYAPYWLVLIGVI
                     VALLLAKHSYGGLGQNLFNPAMVGYALLLVSFPVQMTAWIVPIELLSEPPTFRDAISL
                     IFYGVTSDGFSIHQLVNSVDGIAQATPLDSMKSSLAKSGFDAVMNTPIFNGLFATGWL
                     QLNLAFLFGGLVLIYKRIIHWQIPVAMLATFAFFSGFTELFSQQSHLHFVSHFFSGAM
                     MFGAFFIATDPVTASITPRGKLIFGGLVGLLVYLIRYYGNYPDAIAFSVLLANICVPL
                     IDHYTQPRLYGTKLDNR"
     gene            6332..6964
                     /gene="rsxG"
                     /locus_tag="PXC99_001295"
     CDS             6332..6964
                     /gene="rsxG"
                     /locus_tag="PXC99_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxG"
                     /protein_id="HDL5417750.1"
                     /translation="MNTSKITLNYALILGFIALLCTAVSTGVYLLTKGKIDDVTAMQQ
                     RKLLEEVVPKSHFDNDVLATCKLVQLENAPYLNRIYVAKKSENLTAYLVQGTAPDGYS
                     GDIVLLMGIEPNGNILGVRTLEHKETPGLGDKIETRVSDWILSFTNQLFSLENEADWN
                     VKKDGGKFDQFTGATITPRAVVNHIRQSAKWVVTELAQNPTMFNQFKACK"
     gene            6973..7656
                     /locus_tag="PXC99_001296"
     CDS             6973..7656
                     /locus_tag="PXC99_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit E"
                     /protein_id="HDL5417751.1"
                     /translation="MEREQQIPVTNIDVAPKQSSVWKTIFADGVWKNNGALVQLLGLC
                     PLLAVSNSVTNALGLGLATMFVLICTNITVSLFRKITPHDIRIPIYVMVIATVVTAVQ
                     LLMNAFAFPVYQSLGIFIPLIVTNCIVIGRAEAYASKNEVKFSAFDGFSMGLGMTFSL
                     VVLGALREIIGNGTLFSGLDLLLGDWAKALRIDVLHIDSGLLLAILPPGAFIGLGVIL
                     AVKNIIDKR"
     gene            8097..9047
                     /gene="lpxM"
                     /locus_tag="PXC99_001297"
                     /gene_synonym="msbB"
     CDS             8097..9047
                     /gene="lpxM"
                     /locus_tag="PXC99_001297"
                     /gene_synonym="msbB"
                     /EC_number="2.3.1.243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249087.1"
                     /note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
                     myristoyltransferase, an enzyme characterized in
                     Escherichia coli and involved in biosynthesis of the form
                     of lipid A found in that species and some closely related
                     species; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
                     /protein_id="HDL5417752.1"
                     /translation="MTRITAQDGYTHKFLWSFLHPKYWGVWLGVLGLVILAYVPVRIR
                     DKLSAFVGKMAYRYLKQKNKKGYHRAKVNLRYCFPDWSEKKREEVVEKMFITVAQTML
                     AIGETAIRPASYLQKRCEFTGFENVVKAKESGKNVIMLVPHTWSIDMAGVAMFSLGYP
                     MTSMYNPHRNALVDWLWNITRERLGGRMHTRQNGIKAFLADVRKGDVGYFLPDEDFGE
                     ELSVYADFFATEKATLPGLNKMARVANAEVIPMFSIYNAEKAKYEMEILPPLEFSGDP
                     IQSAREMNRVIEYFVEKNPEQYVWILRLLKTRRNREDIYL"
     gene            9175..9714
                     /gene="apt"
                     /locus_tag="PXC99_001298"
     CDS             9175..9714
                     /gene="apt"
                     /locus_tag="PXC99_001298"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HDL5417753.1"
                     /translation="MNQLDLIKSSIKSIPDYPKAGIIFRDITSLLEVPTAFQATIDAI
                     VAEFKDKGITKIVGTESRGFIFGAPVALALGVPFVLVRKPKKLPREVISQSYTLEYGE
                     DTLEIHKDAVSANDNVLVIDDLLATGGTIDATAKLIRRLGGNVEHAAFVIWLPELGGK
                     ERLEKEGVKSFSLVSFEGH"
     gene            9805..11862
                     /gene="dnaX"
                     /locus_tag="PXC99_001299"
     CDS             9805..11862
                     /gene="dnaX"
                     /locus_tag="PXC99_001299"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HDL5417754.1"
                     /translation="MSYQVLARKWRPQRFSEVVGQQHVLSALENSLREDRLHHAYLFS
                     GTRGVGKTSIARLFAKGLNCVNGITAEPCGECANCKAIEEGHFIDLIEIDAASRTKVE
                     DTRELLDNVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQ
                     KLPITILSRCMQFHLRALEQSQIARHLEFILNAENIPFEPLALEKLAKAAQGSIRDSL
                     SLTDQAIAMSNANITLAIVSQMLGLIDDNQPLELVQATAQADGEKAMAIIEQIAAKGV
                     DWQQLLSDVAEVLHKIAMLQLVKTPTTEETLVHFLAKQIPPEDVQFFYQLILNSKKEL
                     PFAPEQRAGVEMAILRALAFHPKQAEKIATVAVEKVTQPNHSVSAVTTAKPQNQISQL
                     RENFEQNQQKTVTVANTTTAVESIAQPPQAVDTAISPSAPATLSPAMAALEARKKLQA
                     QQANLAQTEKKKPELKAPQVIAKKSANQTASLQERFISLAENQHKAVLQVSKKTESAP
                     KSVEDEDYRWTWLNPELENQADSAKPSDIKQAILQERTPELVAKTIHLSCQQDKWCDI
                     ANSLNLGGFSRQIALNSYLAEQNEQHLALVLKPNMAHLDNPESRKNLEAALAEKGYSY
                     ELTIGDNSEQQTPLEIRRAIFKQLTEAAKSALLNDEKLMLLRNAFDAQIDESTIRAVA
                     ETE"
     gene            11868..12776
                     /locus_tag="PXC99_001300"
     CDS             11868..12776
                     /locus_tag="PXC99_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5417755.1"
                     /translation="MKALELIDLVKTYPTGVKAVKGINLVVEQGDFYALLGHNGAGKS
                     TTIGIISSLVNKTSGSVKVFGYDLDTQKVELKHQIGLVPQEFNFNQFEKVIDVLVQQA
                     GFYGIPRSEALVRAEKWLKLLDLWEKRTHLTRELSGGMKRRVMIARALMHNPKLLILD
                     EPTAGVDIELRRSLWDFLRDLNNQGTTIILTTHYLEEAETLCRHIGIIQHGELIENTS
                     MKALLAKLESEVFVLDLQNSEQNQPLVIQNYPHKWLDENTLEVNVKRQQGLTNLFSQI
                     SAQGAEVLSMRNKSNRLEELFINMAQ"
     gene            12778..13539
                     /locus_tag="PXC99_001301"
     CDS             12778..13539
                     /locus_tag="PXC99_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5417756.1"
                     /translation="MNLIGFYTLAYKECRRILRIWRQTLVPPVITTTLYFLIFGTLIG
                     GRIGEMNGVGYTQFIAPGLIMMTAITASYVNTASSFFLSKFTRDFEEMLISPLSTHNI
                     IWGYVTGSILRAGLAATLVMCVAMVFVSFEIYSVAIIVLTLLLTIIAFALGGVINAVF
                     ARSFDDVGLIPTFVLTPLTYLGGVFYSISLLPEFWQTVSKFNPIVYMINGLRYGFLGI
                     SDVPLGYTFAVLTSLCIGLYIIAYSLIQRGVGLRS"
     gene            13560..14315
                     /gene="modA"
                     /locus_tag="PXC99_001302"
     CDS             13560..14315
                     /gene="modA"
                     /locus_tag="PXC99_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5417757.1"
                     /translation="MKALKKLAITMALTLSGTAFSQEITVFAAASMTNVLQDIQQDFE
                     KAYPQDKITFSFASSSVLAKQIEQDAPADIFISADQKWMDYVAEKQPEKVKHRRNLVR
                     NELVLIAPTESNIEPKAIQAVDFAKELANSYLSVGDPNHVPAGKYAKKALSHYQLWES
                     VEPRLARAKNVRDALSFVERGESPLGIVYSTDAKVSNKVKVVAVFPPESYGEIVYPAA
                     AVSEKASAATFLDFLKTPKAKAKFEAAGFYPVN"
     gene            14499..15191
                     /gene="modB"
                     /locus_tag="PXC99_001303"
     CDS             14499..15191
                     /gene="modB"
                     /locus_tag="PXC99_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HDL5417758.1"
                     /translation="MLNFTPQELNAIVLSLKVASIAVVLALPLAVWVAWLLARKQFWG
                     KNLLNGIMHLPLVLPPVVIGYLLLISMAKRGVIGQYLWEWFHFSLSFSWKGAVLASMV
                     MAFPLMVRSIRLAFEAVDPKLEQAARTLGAIPLKVFFTLTLPLSFSGIIAGGVLGFAR
                     SLGEFGATITFVSNIPNQTQTIPAALFTFIETPDGEMAAARLCLVAILISLIALFCSE
                     WLAERQKRYAQT"
     gene            15178..16233
                     /gene="modC"
                     /locus_tag="PXC99_001304"
     CDS             15178..16233
                     /gene="modC"
                     /locus_tag="PXC99_001304"
                     /EC_number="7.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum ABC transporter ATP-binding protein
                     ModC"
                     /protein_id="HDL5417759.1"
                     /translation="MLKLKLLQQLGNLTLNVNLDLPNKGITAIFGRSGAGKSSLINLI
                     AGLSTAQAGFIELNGQVLFDSQNGINLPPEKRNIGYVFQEHRLFPHYSVEKNLKYGYK
                     RSDSADFLQIVELLGIAPLLNRYPASLSGGEKQRVAIGRALLSSPNILLMDEPLSALD
                     LPRKQELLDYLDKLSARLEIPILYVSHSLEEVVRLADHLVLLENGKVTAFDTLSAVWH
                     SSAFSAWQPNHQRISLLELPVEETLPHYNMLGLSLNAQRLWVNQLPRHQIGEKLRVTI
                     ASKEVSISLQKPTQSSIRNVLKGNVRKIETHLDRVDLAIQVENQQIWSTISLWSFNEL
                     AIQPEQEVYLQIKSVSL"
     gene            16288..16722
                     /locus_tag="PXC99_001305"
     CDS             16288..16722
                     /locus_tag="PXC99_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RatA family
                     toxin"
                     /protein_id="HDL5417760.1"
                     /translation="MPIVNQSALVPYSAEQMYQLVNQYEKYPEFLSGCVSTKTLSTGE
                     NELKAELHIQKLGISQTFSTHNKMTPPYKIEMALIEGPFRHLHGAWTFTPFDEQSCKI
                     ALQLNFEFSSPIVAMVFGKVFNELTLKMVNAFKQRAKEVYGV"
     gene            16712..17047
                     /locus_tag="PXC99_001306"
     CDS             16712..17047
                     /locus_tag="PXC99_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HDL5417761.1"
                     /translation="MVSEQRQNPEEQKSEEQKINVEVLYAYPDKYFLKKLQVPQNATI
                     QTIILLSGVLEKYTEIDLRENKVGIFSRPAKLNETVEEGDRIEIYRPLIADPKEIRRK
                     RAAEQAEKK"
BASE COUNT         4913 a         3547 c         3880 g         4834 t
ORIGIN      
        1 cagataccag atataacaag aatgggcaag gtgctgtttc tgaaagaaat attatagatg
       61 ctaaaaatcg ttttaaagcg agccatccat acgcaaaaat tatttcttgt gttagagggt
      121 ctgagacata tgtaacacgt ccagcaaaag ctaatgctac aacaaaatct gtcaaggaaa
      181 agcaatctca accacaagaa agttcatcgc tcagttcaat gttacttggt gcggctgtaa
      241 ctgctggggt tggttttgta gccaataaat ggtttagcaa aaaagataac acttaattta
      301 tctctaacca atgtggagta aaaatggctg gattattacc accttatttc aaaaagaaaa
      361 atagtgatca ctataaagat gctgtaaaac aatttgggaa agaacaagtt gatgaggtta
      421 tagcacagtg tgatgaactt gaatcttggg taaaagaaat gccaacaaaa caacttatta
      481 tgtatgttgg ttgtttccat acttttaaca aattatctca atctaaagct tatgttcaag
      541 agaactttcc aaacgtactg gaaaacccgt ttcttttcca aacactttcg gcagcgtctc
      601 ataatgaact taaaataaat cgaggatata aattcaaaga aaaaatgctt gatgaattct
      661 ataatcttat agagttgtct gaaaaggatg atgaagaata ttctgaagaa gaggtaaaac
      721 tccctttatg gaaaaagatt tattatgttt tcattatatt tgggattatt atgtttattt
      781 atcgagtaat taattggttg ttattctaat atcctctata tcaaaggagt gagacttttt
      841 aggattaact tagaaaatca agctcctttc acctttcatg ctgtatagct tagtccccac
      901 attctccatt ctaccagaga tagaaacaaa ggtaacaaga tcatatttga tatggtatgt
      961 ttactagaag tacctccgat ttcttattgt gaatgagccg aaaacaagag ataatataac
     1021 gtttattttt aatgagatgc tttaacaaac ggtcagattt tctctgtttt ttgcaaaata
     1081 aaatgcgttt ttgaccgctt gtatatttaa ttttgtggaa tttatggtcg attatattct
     1141 gttggtcatc agcaccgccc ttattaataa ctttgtctta gttaaatttc tagggctttg
     1201 tccgtttatg ggagtgtcga aaaaggtgga aactgctatt ggtatggggt tggcgacaac
     1261 ctttgtgctg acggttgcct cgctctctgc ttatttgatg gaaacctatt tgcttgagcc
     1321 gttaaacgct caatttttgc gtaccttggt gtttatttta gtgattgcgg tgatcgtgca
     1381 attaacggaa atgattgtgc ataaaaccag cccgacactt tatcgcttgc ttgggatcta
     1441 tttaccgctg attaccacca actgtgccgt attaggggtg gcattattaa acgtgaattt
     1501 agccaataac ttggtggaat ctgttcttta tggttttgga gccgctgccg gtttctcgct
     1561 ggtgttagtt ttatttgcgg ctctgcgtga gcgtttggct gccgctgatg tgcctcgtcc
     1621 gttccaagga gcatcaattg ctctgattac cgcaggcttg atgtcgcttg cctttatggg
     1681 ctttacagga ttggtgaaac tctaatgctt gatttgccaa ttatcgctta tattcttatc
     1741 gctattgctg tgatcgcact gattttcggg gcggttttag gctattcctc gattaaactg
     1801 aaagttgaat ccgacccgat tgtcgatcaa attgatgccc ttttaccaca aagccaatgc
     1861 ggtcaatgtg gctacccggg ctgtaagcct tatgctgagg cgattgctaa tggtgatgtg
     1921 atcactaaat gtgtgccggg tggacaacct ttagtggtga atcttgccga attgcttggg
     1981 gtagaagtgc cgccaatgga aggtatggca gagcctgaga tgaaagtggc ttttgtgatt
     2041 gaagatctct gcattggctg tactaagtgc attcaggctt gcccggttga tgcgattatc
     2101 ggcacgaata aagcaatgca caccattatt ccggatcttt gcaccggctg tgaactttgt
     2161 gtcgcccctt gcccgaccaa ctgtattgaa atgcgaccaa ttaaaccgac aacccaatct
     2221 tggaactgga aatttgacca agatttaatt attccgattg tgaataccac tgaattgcag
     2281 agaaaattag ttaccggcgg aggcaaaaat gagcaatcct aatttagtga ttgagcgaat
     2341 ccgccaaaat aaagaaacgg gtaaactgtg ggatttcccg ggcggtattc acccgatgga
     2401 aaataaatcc caatcaaaca gcaagccaat tcgcacctta aatttaccga agtttttcta
     2461 tgtgccactg gttcaacatt ctggctgggc aggggaatta ttagtcaaag tcggcgatgt
     2521 ggtattgaaa gggcagccgc tcacgaaagg cgatcacttc cgtcaactgc ccgtacacag
     2581 cccaacctcc gggcgggtga ttgggattga gccttatgtt tccgctcacg cctcaggttt
     2641 gcccgaaata acggtgatta ttgaaaccga tggtaaagat aaatgggtgg aacgccagcc
     2701 gattgaggat tttttaagcc taacaagcga tcaaattatc caaaaagttt accaatatgg
     2761 cattgccggt ttaggcggtg cggtattccc aaccgcaaca aaattaagtt tggcggataa
     2821 acgctgtaaa ttactggtga ttaacggggc agaatgtgag ccttacatca cctgtgacga
     2881 tcgcttaatg caagatttca ctgcggatct tatcgaaggt attcgcattc tgcgttatgt
     2941 gcttcgcccg gaagaagtgg tgattgcgat tgaagacaac aaaccgcacg ctattcaagc
     3001 tttagaaacc gctttaaaag gctcgaacga tatgtttgtg cgggcgatcc cgactaaata
     3061 tccctccgga gcttctgatc agctgattca agtgttgacc ggacttgaga ttccggctgg
     3121 caaacgcact attgaaatgg gcattgtgat gcacaatgtc ggcacggcgt ttgcggttaa
     3181 acgggcaatt attgatgatg aacctttgat tgaacgggta gtgacgctga caggcgataa
     3241 aattcgcaac aaggggaacg tgtgggcaag attaggcacg ccaattcagc acttgttgga
     3301 gcaggtagat tatcaagccg ataaacgctt tccggtgttt ttaggcggac cgatgatggg
     3361 ctttattttg cctgcattgc aagccccgat taccaaaact gcgaactgct tgattgcccc
     3421 tgatcatttt gaatatgcac cacctgaacc ggagcgtagt tgtatccgct gttcaagctg
     3481 ttccgatgct tgcccggtgg ggttattgcc acagcaactt tattggtttg cccgtgcaga
     3541 agatcacgat aaatcgaaag aataccattt agatgcctgc attgagtgtg gcgtttgtgc
     3601 ttacgtttgc ccaagctaca ttccgttaat ccaatatttc cgccaagaaa aagcaaaaat
     3661 cgaggaaatt gaggaaaaag cccgcaaagc ggaagaggct aaaatccgct ttgaggcgag
     3721 agaagctcgc ttacaaaaag aacgagatgc cagaactgct cgcattagcc aagcggcgga
     3781 aaaacgccgt gaagaagtgg caaatgcagg tggtgttgat cctgtaaaag cggctcttga
     3841 acgcctgaaa gcgaaaaaag cggttgaaac agtccaagaa ataccggcag aagtacaggt
     3901 aaaacctaac ggcgagcctg ataacagcga tttaatggca caacgcagag ccagacgttt
     3961 agccaaacag gcagaacaag cggtcgaaaa atcggaaaat gttacaaatg ccttgattgg
     4021 ggcaaataat gatttgcctc tacaatcaat gaacgaaact gcatcggata aatctgtagg
     4081 ggcgaataac tattcgcccg aagcagaaag cgaagaccca cgcaaagccg ccgttgcggc
     4141 tgcccttgcc cgagccaaag ccaaaaaaca ggcacagcaa gcggtcgaaa aatcagaaaa
     4201 tattaccaat gccgtgattg gggtaaataa tgatttgccc ctacaatcaa tgaacgaaac
     4261 ggtatcggat aaatctgtag gggcgaataa ccattcgccc gaaacagaaa gcgaagaccc
     4321 acgcaaagcc gccgttgcag cagctatcgc tagagctaaa gcgaaaaaac aagctcaaca
     4381 agcggtcgaa aaaccggaag atattgccaa tgctgtgatt ggggtaaata atgatttgcc
     4441 cctacaatca atgaacgaaa ctacatcgga taaatctgta ggggcgaata accattcgcc
     4501 caaaacggaa agcgaagacc cacgcaaagc cgccgttgcg gccgccatcg ccagagctaa
     4561 agcgaaaaaa gccgctcagc aggagaaaag caacaatgtt tagcgagcta attccggcat
     4621 tgccgtggtc gttcctgttt attcaggact taatcggcac tatcgtgttt gcgatttcgg
     4681 gggcaattgc tgcccgccag cacaaaatgg acattttcgg tatgtttatt ttagcgtttg
     4741 tgaccggggt cgggggcggt acgctaaggg atatgatgat tggctccacg ccggtgtttt
     4801 ggatgaaaca accgatctat gtgctgatga ttacccttgc agtggtgatt accgctattt
     4861 tccgcaacca aatttcccgc aaaagttggc aaaccggctt gctggtgttt gatgccatcg
     4921 ggcttggcgt atttaccgtg attggcgtgc aaaaaggctt ggatttcggc ttgcacccac
     4981 tgatctgtgt ggctctgggc ggtgtgacag gctgttttgg tggcttaatc cgtgatattt
     5041 tacgcaacga agtgccgatc attttgcaaa aagaagtgta tgtgaccgcc agccttatcg
     5101 gtggtgtgat ttttgtggct gcaaactcag ttgggctcga aagcgattgg gtttaccttg
     5161 ccaccgtgtt caccgtaatt attatccgcc tgctggcaat acgctttaat ttgaatttgc
     5221 cgagacttta ataagcggtc atttttttgc aattttttac taaaaaggtt ttatagatgt
     5281 ttaaaatggt cagttccccc cacactcatt cgagcaatct cactgcgaat tttatgctgt
     5341 gggtgattgc gatgatgtta cctgcttttg gggttcagct ttattatttc ggctatggtg
     5401 tgctgattca aacgttgctt gccgttagcc ttgcgattgt gattgaaatc gggattgcaa
     5461 aattacgcaa aaaaacaacc gctttctatt tggctgactt atcaggtatt ttaaccgcct
     5521 tgattttggc gatgtcgatt ccgccttatg ctccttattg gcttgtgttg attggcgtga
     5581 ttgtggcgtt attattggca aaacacagtt atggtggctt ggggcagaat ctatttaacc
     5641 cggcaatggt tggctatgcg ttgttgttgg tttctttccc ggtgcaaatg acggcgtgga
     5701 tagtgccgat tgagttatta agtgaaccac cgacatttcg tgatgcgatt tcgttgattt
     5761 tttacggggt aactagcgat ggttttagta ttcatcagct agttaatagt gttgatggca
     5821 ttgcacaagc taccccgctt gatagtatga aaagcagcct tgcaaaatca ggttttgacg
     5881 cggtaatgaa tacgccgatt ttcaacgggc tgtttgcgac cggttggcta caactgaacc
     5941 ttgcgttctt attcggcggt ttggtgttga tttataaacg gattatccat tggcaaattc
     6001 cggtagcaat gttggcaact tttgcctttt ttagtggatt caccgagctg tttagccaac
     6061 aatcgcactt gcattttgtg agccatttct ttagcggtgc gatgatgttc ggggcatttt
     6121 ttattgcgac cgacccggta acagcctcca ttaccccaag aggaaaactg attttcggtg
     6181 gcttggtggg attattggtt tatctaatcc gctactacgg aaattaccct gatgcgattg
     6241 cattttcagt gttattggca aacatttgcg taccgttaat cgaccattat acgcagccga
     6301 gattatacgg cacaaaattg gataacagat aatgaacacc tcaaaaatta ccttaaatta
     6361 cgccttaatt ttaggcttta ttgccttgct ttgcaccgct gtttcaaccg gtgtgtacct
     6421 gcttaccaaa ggcaagattg atgatgtaac cgcaatgcaa caacgcaaat tattggaaga
     6481 ggttgtgccg aaaagccatt ttgataatga tgtgttggcg acttgcaaac tggttcagct
     6541 cgaaaatgcc ccttatttga accgtattta tgttgcaaaa aaatcggaaa atctgaccgc
     6601 ttacctagtt caaggaacgg ctccggacgg ctattccggc gatattgtgc tattgatggg
     6661 gattgagccg aacggcaaca ttttaggcgt tcgcaccctt gagcataaag aaactccggg
     6721 gctgggagat aaaattgaga cccgagtgtc ggattggatc ttatctttta ccaatcaact
     6781 ttttagttta gaaaacgaag cggattggaa tgtaaaaaaa gatggcggca agttcgacca
     6841 atttaccggt gcaactatta cacctcgtgc ggtggtcaat catatccgcc aaagtgcgaa
     6901 atgggtggtg acagagctgg ctcaaaaccc gacaatgttt aatcaattta aagcgtgcaa
     6961 atagggggag aaatggaaag agaacaacaa atccctgtga cgaatattga cgttgccccg
     7021 aaacaatcca gcgtttggaa aacgattttc gctgatggtg tgtggaaaaa taatggtgct
     7081 ttggtgcaat tattagggct ttgcccacta ctggcggttt caaacagcgt aaccaatgca
     7141 cttggactag gcttggcaac aatgtttgtg ctaatttgca ccaatatcac ggtttccctg
     7201 tttcggaaaa tcactccaca cgatattcgg attccgattt atgtgatggt aattgcaacg
     7261 gtggtaacgg cagtacagct tttaatgaat gcttttgctt tccctgttta ccaatcgctc
     7321 gggattttta ttccgctgat tgtaaccaac tgtatcgtga ttggacgagc agaagcctat
     7381 gcctcaaaaa atgaggtcaa attctcggct tttgacggct tttcaatggg gctgggaatg
     7441 acttttagcc ttgtggtgct aggcgcgttg cgtgaaatta ttggcaacgg cacgctgttt
     7501 tcaggcttag atctactcct tggcgattgg gcaaaagccc tacgcattga tgtattgcat
     7561 attgattcag gtttactact ggcaatttta cctccggggg cttttattgg acttggggtg
     7621 atattggcgg tgaagaatat tattgataag agatgatgtg ttatgtcact tttctttgct
     7681 tgtgcaaaga aaagtaacca aaagaaagca caccctgctt tgttgctatc ctcacttggt
     7741 tgaaattttc ttaacgaaaa ataaccctga tgttcgcttc gctctcgctc gagttatttt
     7801 cctaaaaatt tcaagtcgtt cgggcaactc agaagggaac ccgatccgac catacaagcg
     7861 gtgatttttt tggaaaattt tgcaaaatga tgctctgccg ggttcccttc tgaaccgccc
     7921 gaacgacttt gaatttgtag gaaaaattcc ttgtttgagc agcgaagcgg cgagtttgga
     7981 attttttcgt taagcaaatt caaaccaagc gaagatagcg gtgaagtagg gttgcctttc
     8041 tttggttact ttctttggcg aagcaaagaa agtgacaaat aatgaggaat tatagaatga
     8101 cacgaattac cgcccaagac ggctatacgc acaaattcct atggtctttt ctacacccga
     8161 aatattgggg cgtatggtta ggtgtattag gattagtgat tttagcctat gtgccggtgc
     8221 gaattaggga taaattatcc gcttttgtgg gtaagatggc gtatcgctat ctcaagcaga
     8281 aaaataaaaa aggctaccac cgtgctaaag tgaatttgcg ttactgtttt cccgattgga
     8341 gtgagaaaaa gcgtgaagaa gtggtcgaga aaatgtttat cacggtagca caaaccatgt
     8401 tggcgattgg cgaaactgca atccgcccgg cctcttattt acaaaaacgg tgtgaattta
     8461 ccggctttga aaatgtggtg aaagccaaag agagcggtaa aaacgtgatt atgttagtgc
     8521 cacatacttg gtcgattgat atggcggggg tggcgatgtt ctcgctcggt tatccgatga
     8581 catcaatgta caatccacac cgtaatgcgt tggtggactg gctgtggaat attacccgtg
     8641 agcgtttagg tgggcgaatg cacactcgtc aaaatgggat taaagcgttt ttagccgatg
     8701 tgcgtaaagg tgatgttggt tattttctgc ccgatgaaga tttcggcgaa gagctaagtg
     8761 tgtatgccga cttttttgcc accgaaaaag ccactttgcc gggcttaaat aaaatggcaa
     8821 gagtggcaaa tgcggaagtg atcccaatgt tctcgattta taatgcggaa aaagcaaaat
     8881 atgaaatgga aattttgcca ccgcttgaat tttcaggaga cccaattcaa tccgcccgag
     8941 aaatgaaccg agtaattgaa tattttgtgg agaaaaaccc cgagcagtat gtttggattt
     9001 tacgtttgct taaaaccaga cgaaacaggg aagatattta tctataatat agggaaaagg
     9061 aaactgaaaa gtaagctgta ctatcaaacg taaggttatc aatttctcct tgaaatttct
     9121 gctgtttttc tatagagttt tccagttatt tttttattac acgtaggtca aacaatgaac
     9181 caattagatt taattaaatc ttctatcaaa tccattccag attatccgaa agcagggatt
     9241 atcttccgtg atatcacttc acttttagaa gtgccaactg cattccaagc caccattgat
     9301 gccatcgttg cagaatttaa agacaaaggt attactaaaa ttgtcggcac agaatctcgc
     9361 gggtttattt ttggtgcccc tgttgcatta gcgttaggcg tgccttttgt gttggttcgt
     9421 aaaccgaaaa aattaccacg tgaagtgatt tcgcaatctt acacgcttga atatggtgaa
     9481 gacacgctag aaattcataa agacgcagtg agtgctaatg ataatgtatt ggtcatcgac
     9541 gatttactcg caaccggtgg tactattgat gcaactgcaa aactaattcg tcgcttaggt
     9601 ggtaacgtag aacacgctgc ctttgtgatt tggctgcctg agttaggtgg taaagagcgt
     9661 ttggaaaaag aaggggttaa atcctttagc ctagtcagct ttgaaggtca ttaatgggga
     9721 acaagcggtg gctttttgct aaaattttgc aaaatttttc ggaaagatga ccgcttgtga
     9781 tttccaaatt gaatagaaaa atcaatgagt tatcaagttt tagcccgtaa atggagaccg
     9841 caacgcttct cggaagtagt tggtcagcaa cacgttttat ctgctcttga aaacagctta
     9901 agagaagata gactgcacca cgcttacctg ttttcaggca ctcgtggtgt gggtaaaacc
     9961 tctattgccc gtttattcgc caaaggctta aactgtgtaa acgggatcac cgccgagcct
    10021 tgcggtgaat gtgcgaattg taaagcgatt gaagaagggc attttatcga tctcattgaa
    10081 attgatgctg cttctcgtac taaagtggaa gacacccgtg agctacttga taacgttcaa
    10141 tacaaaccca ccgttgggcg ttttaaggtt tatttaattg acgaagtgca tatgctctct
    10201 cgtcatagtt tcaacgcctt actaaaaacc cttgaagagc cgcctgaata tgtcaaattc
    10261 ttgctggcta ccactgatcc gcaaaaactg ccgattacga tcctctctcg ctgtatgcaa
    10321 tttcatctgc gggcattaga gcaatcgcaa attgcccgtc atcttgaatt tattctaaat
    10381 gcagagaaca ttccgtttga gcctttggca ctagaaaagt tggcaaaagc agcacaaggt
    10441 agtatccgag actctctcag cctcaccgat caagccattg caatgagtaa tgccaatatt
    10501 acgcttgcga tagtcagcca aatgctaggg ttgattgacg ataatcaacc actagaatta
    10561 gtgcaagcaa ccgcccaagc cgacggtgaa aaagcaatgg cgatcatcga gcaaattgca
    10621 gcgaaaggcg ttgattggca acaattatta agcgatgtgg cagaagtgtt acacaaaatt
    10681 gcaatgttgc aattagtgaa aacacctaca accgaagaaa cattagtgca ttttctggca
    10741 aaacaaattc cgcccgaaga cgtgcaattt ttctatcaat taatcctcaa cagtaaaaaa
    10801 gagttgcctt ttgcaccgga gcaacgtgcc ggtgttgaaa tggcgatttt gcgtgcgttg
    10861 gctttccacc ctaaacaggc agaaaaaata gcaacagttg cagtggaaaa ggttacacaa
    10921 ccaaaccatt cggtttcagc ggttacgaca gcaaaaccac aaaatcaaat tagccagcta
    10981 agagaaaatt ttgagcaaaa tcagcaaaaa acggttactg ttgccaatac taccacagcg
    11041 gttgaaagca ttgctcaacc gccacaggca gtagataccg ctatttcgcc gtctgctcct
    11101 gcgactcttt caccggcaat ggcagccctc gaagcccgca aaaagctaca agcacagcag
    11161 gcaaatttag ctcaaaccga aaaaaaaaag cctgagctaa aagcccctca agttattgca
    11221 aaaaaatcgg caaatcagac cgcttcattg caagagcggt ttatcagctt ggcggaaaat
    11281 cagcacaaag ccgtactgca agtttcaaag aaaaccgaat ccgcccctaa aagtgtggaa
    11341 gatgaagatt atcgctggac gtggctcaat cctgaattag aaaatcaagc agacagtgcc
    11401 aaaccttctg atattaaaca agcgattttg caagaacgca cccctgaatt agtggcaaaa
    11461 accattcatt tatcttgtca gcaggataaa tggtgtgaca tcgccaactc actcaattta
    11521 ggcggatttt cccgtcagat cgccttaaat agctatttag cggaacaaaa tgaacagcac
    11581 ctcgcattgg tgttaaagcc gaatatggct cacttagata atccggaatc acgtaaaaat
    11641 ttagaagctg cccttgccga aaaaggctat tcatacgaat tgaccattgg tgacaatagc
    11701 gaacagcaaa ctccgcttga aattcggcga gccattttca aacaattaac tgaggcagca
    11761 aaatcagctc tgcttaacga tgaaaaatta atgttacttc gcaacgcttt tgatgcacaa
    11821 attgatgaat cgaccattcg agcggtggcg gaaactgagt aaaacaaatg aaagcattag
    11881 aattaattga tttggtaaaa acctacccaa caggtgtaaa agccgttaaa ggcattaatc
    11941 ttgtggtcga gcaaggtgat ttctatgccc tacttgggca taacggggca ggtaaatcta
    12001 ctactattgg cattatcagc tcactggtaa ataaaaccag cggcagcgtg aaagtgtttg
    12061 gctatgattt agacacccaa aaagtcgaat taaagcatca aatcggctta gtgccacaag
    12121 agtttaattt caatcagttt gaaaaagtga ttgatgtgct agtgcaacaa gccgggtttt
    12181 acggcattcc tcgcagtgaa gccttagtac gtgccgaaaa gtggctgaaa ttgctcgacc
    12241 tatgggaaaa acgcacccac ctcacccgtg agctttctgg tggaatgaaa cgtcgggtga
    12301 tgattgcccg agccttaatg cacaatccaa aactactgat tttagatgaa cctaccgcag
    12361 gggtggatat tgaactccgc cgctcattgt gggatttctt gcgggatcta aacaatcaag
    12421 gcacaactat tattctcact acccactatt tagaagaggc ggaaacccta tgccgtcaca
    12481 tcggcattat tcaacacggc gaattaattg aaaacacctc aatgaaagcc ttgcttgcca
    12541 aattggaaag tgaggtattt gtgttagatt tgcaaaattc tgagcaaaat caaccgcttg
    12601 tgattcaaaa ttacccgcat aaatggcttg atgaaaacac ccttgaagtg aatgtaaaac
    12661 gccagcaagg gctaaccaat ctgttttcgc aaatttccgc ccaaggggct gaggtgctaa
    12721 gtatgcgaaa caaatcaaac cgcttggaag aactatttat caatatggct cagtaaaatg
    12781 aatttaatcg gattttatac cttagcttac aaagagtgcc gccgcatttt gcggatttgg
    12841 cgacaaactt tagtgccacc ggtgattact accacgctct attttttaat cttcggcacg
    12901 ctgattggtg ggcgaatcgg ggaaatgaat ggcgtgggtt acacccaatt tattgcaccc
    12961 ggcttaatta tgatgaccgc catcaccgcc tcttatgtga ataccgcctc ttcatttttc
    13021 ttgagtaaat ttacccgaga ttttgaagag atgctgattt cgccactctc tacccataat
    13081 attatttggg gttatgtcac cggcagtatt ttgcgtgcag gtttagccgc aaccttagta
    13141 atgtgcgtgg caatggtgtt tgtctcgttt gaaatctact cggttgcgat tatcgtctta
    13201 accctgttgc tgacaatcat tgcctttgcg ttaggtggcg taattaatgc ggtgttcgcc
    13261 cgctcctttg atgatgtggg gctgattcca acctttgtgc ttactccctt aacttactta
    13321 ggcggcgtat tttactctat ttcattactg cctgaatttt ggcaaacggt gtctaaattc
    13381 aacccgatcg tttatatgat taacggctta agatatggct ttctcggtat cagcgatgtg
    13441 ccgttaggtt atacttttgc agtgcttact tcactttgca tcggcttgta tattattgcc
    13501 tattccttaa ttcaacgagg ggttgggctg cgttcttaac taattgtgag gttatgaaaa
    13561 tgaaagcatt aaaaaaacta gcaattacaa tggcattaac gttatcaggc acagcctttt
    13621 cacaagagat taccgtgttt gctgccgctt caatgacaaa tgtgttacaa gatattcagc
    13681 aggattttga aaaagcctat ccacaggata aaatcacgtt ctccttcgct tcatcatcgg
    13741 tattagcaaa gcagattgag caagatgcac cggcagatat ttttatttcc gccgaccaaa
    13801 agtggatgga ttatgttgcc gaaaaacaac ctgagaaagt taaacatcgc cgcaatttag
    13861 tcagaaacga gttagtatta attgcaccta ccgaaagtaa cattgagcca aaagcgatac
    13921 aagcggtcga ttttgccaaa gaattagcaa acagctattt atcggtggga gacccaaacc
    13981 acgttcctgc cggcaaatat gccaaaaaag cccttagtca ttaccaatta tgggaaagtg
    14041 ttgaacctcg tttagcgagg gcaaaaaatg tacgagatgc cctctctttt gtcgagcgag
    14101 gcgaatcccc acttgggatt gtctattcca ccgatgctaa agtgtcgaat aaagtcaaag
    14161 tggttgccgt tttcccaccg gaaagctacg gcgaaattgt ttaccctgct gcggcagtca
    14221 gtgaaaaagc ctctgccgcc acatttttag attttctcaa aaccccgaaa gcaaaagcga
    14281 aatttgaggc agctgggttt tatcctgtaa attaaattta ctctctcccc ttgtgggaga
    14341 gagacagaaa aatatgtcgt tcagacatat ttttcagaga gagggcaaat agcgtttaaa
    14401 atattccccc tctccctgat ttttcttctg aacgaagaaa aatctatccc tctcccacaa
    14461 ggggcgaggg taagcttata accaaatagt tttagattat gcttaatttc accccacaag
    14521 aactcaatgc gattgttcta agcctaaaag ttgcctccat tgctgtagtg cttgcattac
    14581 cgcttgccgt gtgggtggcg tggctgcttg cccgcaaaca gttttgggga aaaaatctgc
    14641 tcaatggtat tatgcatctc cctctggtgt taccgccggt tgtcattggc tatttattgc
    14701 ttatttcgat ggcgaaacga ggggtaatcg ggcaatattt gtgggaatgg tttcatttca
    14761 gcttgagttt ttcgtggaaa ggagcagtgc ttgcctcaat ggtgatggcg tttccgctaa
    14821 tggtgcgttc tatccgttta gcctttgagg cagttgatcc taaattggag caagccgcca
    14881 gaacgcttgg agcaataccg ttaaaagtgt ttttcacgct cactttaccg ctctcttttt
    14941 caggcattat tgccggtggc gtgctgggtt ttgcccgctc tttgggggag tttggggcaa
    15001 ccatcacctt tgtctccaac attcccaacc aaacccaaac cattcctgcc gcccttttca
    15061 cctttattga aacccccgat ggcgaaatgg ctgccgcccg tttgtgcttg gtggcgattc
    15121 tgatttcact cattgccctg ttctgttcgg aatggctggc agaaaggcaa aaacgctatg
    15181 ctcaaactta aacttcttca gcaactcggc aatctgacgc tcaatgtcaa tctcgatttg
    15241 ccgaataaag gaatcaccgc tattttcggg cgttccggtg ccggtaaatc cagcctgatt
    15301 aatttaattg cggggctttc aaccgctcaa gccggcttta tcgaattaaa cggtcaggtg
    15361 ctgtttgaca gccaaaacgg catcaattta ccacctgaaa aacgcaacat tggctatgtg
    15421 tttcaagagc atcgcctttt ccctcattat tcggtggaaa aaaacttaaa atatggctac
    15481 aagcggtcgg attctgcgga ttttttgcaa attgtggaac tgttaggcat tgcccctttg
    15541 cttaatcgct atccggcaag cctttccggt ggcgaaaaac aacgtgtggc gattgggcgg
    15601 gcgttattaa gctcaccgaa tattttgctg atggacgaac cattatctgc cctcgatctc
    15661 cctcgtaagc aagagctact ggactattta gataaattat ccgctcggct tgaaataccg
    15721 attctgtatg tcagccacag tttagaggaa gtagttcgat tggcagatca tcttgtgctg
    15781 ttggaaaacg gcaaagtaac cgcatttgat accctttcag cggtttggca cagctcggca
    15841 ttttccgctt ggcagccaaa tcatcagcga attagcctgc ttgaattacc ggtggaagaa
    15901 acacttcccc actataatat gcttggcttg agcttgaacg cacagcgatt atgggtgaac
    15961 caactccccc gccatcaaat aggcgagaag ctaagggtaa ctattgccag caaagaggtt
    16021 tcaatcagct tacaaaaacc gactcaaagc tcaattcgta atgtgttaaa aggcaatgtt
    16081 cggaaaatag aaacgcattt agatcgggtt gatctggcaa ttcaagtcga aaatcagcaa
    16141 atttggagta cgatcagcct ttggtctttt aatgaattag cgattcaacc ggagcaagag
    16201 gtctatcttc aaatcaaaag cgtttcttta taggcttgca aatttacgct aaaatatgac
    16261 cgcttgttaa ttcccaaaag agacattatg ccaatcgtta atcaatctgc cctcgtgcct
    16321 tatagtgccg agcaaatgta tcaacttgtt aatcagtatg aaaaataccc cgaattttta
    16381 tccggctgcg tgagtaccaa aacccttagc accggcgaaa atgaattaaa ggcagagtta
    16441 cacattcaga aattaggcat tagccaaact ttcagtaccc acaataaaat gacgccgccc
    16501 tataaaatcg agatggcatt aattgaaggg cctttccgcc atttacacgg agcttggaca
    16561 ttcaccccct ttgatgagca aagttgcaaa attgccctgc aattaaattt tgaattttcc
    16621 agcccaattg tagcaatggt gttcggcaag gtgttcaacg aattaacttt aaaaatggta
    16681 aatgctttca aacaacgtgc aaaagaggtg tatggtgtct gaacaacgtc aaaatccaga
    16741 agaacaaaaa agtgaagaac agaaaattaa tgttgaggtg ctttatgctt accctgataa
    16801 atattttctg aaaaaactgc aagtaccgca aaacgcgacc attcaaacta ttattttgct
    16861 ctccggcgtg ttggaaaaat ataccgaaat tgacttgcgt gaaaacaaag tcggtatttt
    16921 tagccgcccg gcaaaactga atgaaacggt ggaagaaggc gacagaattg agatctatcg
    16981 cccgttaatt gctgatccga aagaaatcag acgcaaaaga gcggctgagc aagcggagaa
    17041 gaaatagctt tctcctattc aatctagggg tgaataatta ttcgccctat ctattttctc
    17101 cctcgccatt cctgctataa attccctcct ttgattaaat atgaaaatct ttcataaatt
    17161 ttatgtaaat tttg
//
LOCUS       DANLVT010000047        16522 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.047, whole genome shotgun sequence.
ACCESSION   DANLVT010000047 DANLVT010000000
VERSION     DANLVT010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16522)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16522)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16522
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.047"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(117..632)
                     /locus_tag="PXC99_001307"
     CDS             complement(117..632)
                     /locus_tag="PXC99_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL5417762.1"
                     /translation="MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNT
                     GARREVTEWHRIVFYRRQAEVCGQYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQG
                     DVLQMLGSRQGNDMGGQQGGWGNSAPAGNSYNQGNSNYGYNQTQSAAPQSKPAPQPEP
                     AMNNFDDDIPF"
     gene            787..3615
                     /gene="uvrA"
                     /locus_tag="PXC99_001308"
     CDS             787..3615
                     /gene="uvrA"
                     /locus_tag="PXC99_001308"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HDL5417763.1"
                     /translation="MQHIDIRGARTHNLKNINLTLPRDKFIVITGLSGSGKSSLAFDT
                     LYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTVT
                     EIHDYLRLLFARVGEPRCPDHDVPLAAQTISQMVDRVLEEPEGKRLMLLAPVVKERKG
                     EHVKLLENLTASGYLRARIDGEICDLSDPPALELQKKHTIEVVVDRFKVRADLATRLA
                     ESFETALDLSGSTAIIADMDDPNAEEIVFSSSFACPHCGYSLHELEPRLFSFNNPAGA
                     CPTCDGLGVEQFFDAKKVVQNEEVSLAAGAIKGWDRRSFYYFGLLKAVAEHYGFDLET
                     PFGQLPKKYQNIILNGTKEEIEFVYVNDRGDKVKRKHAFEGVLNNMARRYKETESNSV
                     REELAKYINNRPCMDCEGSRLRREARYVFLDKTNLPMVSEKSIGEALTFFEELKLAGQ
                     KEKIAEKILKEIRERLQFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVM
                     YVLDEPSIGLHQRDNERLLNTLVHLRNLGNTVIVVEHDEDAIRAADHIVDIGPGAGVH
                     GGQVIAQGTAAEIMQIEESITGQFLSGKQKIEIPAQRVPYEPTKLLTLSGASGNNLKK
                     VKLEIPVGLFTCITGVSGSGKSTLVNDTLFPLAQNALNRAENSDVAPYESIDGLSHFD
                     KVIDIDQSPIGRTPRSNPATYTGLFTPIREIFAGTQEARARGYNVGRFSFNVRGGRCE
                     ACQGDGVIKVEMHFLPDVYVPCDHCKGKRYNRETLEIRYKGKTIHQVLEMTVEEAREF
                     FAPMPMIARKLQTLMDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILD
                     EPTTGLHFADIKQLLGVLHRLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEI
                     IATGTPEEVAKDKRSHTARFLKEILAKG"
     gene            complement(3707..5440)
                     /gene="dauA"
                     /locus_tag="PXC99_001309"
     CDS             complement(3707..5440)
                     /gene="dauA"
                     /locus_tag="PXC99_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylic acid transporter DauA"
                     /protein_id="HDL5417764.1"
                     /translation="MLNKWFLTKNAFLAVKPFSALKDALNAGYGKQHLIRDIISGLTV
                     GVIAIPLSMALAIASGVPPQHGLYTAIVAGIVIALTGGSRFNISGPTAAFVVILYPVT
                     QQFGLSGLLMATMLSGGILVLMALLRLGRLIEYIPLPVTLGFTCGIGIVIATLQIKDF
                     LGLSIEKMPEHYLGKLEAIFSALPTINWADTLVGVVTLLVLTRWHKLRLPIPGHLPAV
                     FIGTLLSLLLIHFGQNVATIGSAFHYTLSDGTTGYGIPSVLPEFVLPWNLPNAEGNRI
                     DWNLTTIQALLPAAFSMAMLGAIESLLCAVVCDNMTDTKHHSNNELLAQGLGNIASPF
                     LGGITATAAIARSAANVRSGAVSPISSVVHALLVLFALLFLAKALSYLPLSSMAALLL
                     VVAWNMADIPQIIQLTRRSGKNEIAVLLTCITLTVLFDMVIAITVGVLLASLLFIRTI
                     AEMTKSFEMAHPTDLNDVLVYRISGPLFFAAADNLFADLHNKTVHTDHQIKHIVLQCD
                     AVTVLDAGGIHALTRFVQHMLPHQQLHLCNVQFQPMRMLVRSQKTVNEIPQIQFSSDL
                     ESAFDKIRQAN"
     gene            5682..6614
                     /locus_tag="PXC99_001310"
     CDS             5682..6614
                     /locus_tag="PXC99_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5417765.1"
                     /translation="MDSLIHFLSAFLTNITWIGALELGLIYSLVALGVLISYKILDFP
                     DLTADGSFPLGGAVCVISILNQVDPWLATLYGTLAGAVAGMVTASLHIGFKIEKLLAS
                     ILMMIALYSINLRIMGMPNIAILGETTIYDVMPIESDLQLALVRLVMALLVVIIVKGL
                     FDLFFATEIGLAVRATGTNSRMAKAQGIAINKMTILGMAISNALIALGGALYVQSNGG
                     VDISIGVGTIVIGLAAVIIGEAIFSVKRIIWLTFAVIIGSILYRFFIALALNNETLNG
                     IGFGPQDLNLITALLVVIVLAVPRIKHKLLGKRG"
     gene            6616..7413
                     /locus_tag="PXC99_001311"
     CDS             6616..7413
                     /locus_tag="PXC99_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5417766.1"
                     /translation="MIELNNLFITFNKGTAIENPVLRGLSLKVEQGEFVSVIGSNGAG
                     KSTLLNAISGDCAVDSGEILIQGNKVNQSTTWQRANQVARVFQDPMAGTCESLTIEEN
                     MALAYQRGRKRGLGFAIKRQMRELFKDKLALLGLGLENRLTDQMGRLSGGQRQAVSLL
                     MASLQPSNILLLDEHTAALDPKTTDFVLELTNKIVREQKLTTLMVTHSMRQALDYGDR
                     TVMLHQGQVAFDVSGEQRQKMDVPDLLQLFQQSRHEQLSDDGLLLGN"
     gene            7500..7721
                     /locus_tag="PXC99_001312"
     CDS             7500..7721
                     /locus_tag="PXC99_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417767.1"
                     /translation="MLSIFKTPVEKETLDDWAKISVDVAKVAILAIPVILFGKEPTLI
                     KLTNLALLVLSIYVFLTLGRKLRQLKEVL"
     gene            7904..9829
                     /locus_tag="PXC99_001313"
     CDS             7904..9829
                     /locus_tag="PXC99_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HDL5417768.1"
                     /translation="MTKYDDKIQHAFSENGLLSQNISGFRPRQAQLEMAQVVAKAVKF
                     ATPVVVEAGTGTGKTFAYLVPALLSGKKTILSTGSKNLQDQLFNRDLPTIQKALKYKG
                     KIALLKGRANYLCLERLDQVTAMGVLGDKSVLTDLKKVSKWQNATKTGDLSECITIAE
                     DSPILPQLVSTTESCLGSDCPHFKDCYVVQARRKAMEADVVVVNHHLFCADMAVKKTG
                     FGELIPEAELVIFDEAHQLPDIASQYFGQSLSSRQLFDICKDTNIVYRTELKDLSQLG
                     KAADHLTKVVQDFRLLMGGEGQIRGNLRELFRDKKVVDGLVKVAENIDFLSEVAKKSL
                     GRSETLDKIFERLAEVKVQLKKLMDTSVTGYCYWYEANGRSFGLHITPLMVADKFGEQ
                     LKNQQIGWVFTSATLEVGGKFDHFCQRLGIENAEQLVLQSPFDYQHQSLLCVPRYLPD
                     TNKSNTLTALGQLLKPVIEANKGRCFLLCTSYYMMRGLADFLREHSSLNVLLQGETSK
                     SRLLEKFVKEDHSVLVATQSFWEGIDVRGDDLSLVIIDKLPFTSPDEPLLKARMEDCK
                     IQGGDPFNDIQIPEAVITLKQGVGRLIRDVTDRGVVIICDSRLVMRNYGQTFLKSLPP
                     SRRTRDLGNVIQFLKQK"
     gene            9903..10268
                     /locus_tag="PXC99_001314"
     CDS             9903..10268
                     /locus_tag="PXC99_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HDL5417769.1"
                     /translation="MLSTLLRMVASLALLFVMLYLGKLIVYLFPIGIPDSILGMLILF
                     GCLVIGIVKVEWVIPSAKPLTRYITLFFLPICVELIEHLELLRQNLNTFVLATALSTL
                     VSVVAIGVFAQWIFHYKRG"
     gene            10270..10956
                     /locus_tag="PXC99_001315"
     CDS             10270..10956
                     /locus_tag="PXC99_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HDL5417770.1"
                     /translation="MSYLYTVLTVIMFIAGLKISQKLKSSFLNPFLIALALLIGVLLI
                     FNIPYQDYYQGNSPLNNLLGVSVVALAYPFYEQLPHIRKKWRQIVVILLFSTIITMIT
                     GLGFSLLFGASQEILAAILPKSVSMPMAIIITNEINGNVAIAAVGVMIAGLVGSILGF
                     TLLRLAKVRNVMVIGLSMGAASHALGTARCLEHSMKAGSYSSIALVACGVLSSIFAPL
                     IFNVIVTLCY"
     gene            11040..12803
                     /gene="msbA"
                     /locus_tag="PXC99_001316"
     CDS             11040..12803
                     /gene="msbA"
                     /locus_tag="PXC99_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A ABC transporter ATP-binding
                     protein/permease MsbA"
                     /protein_id="HDL5417771.1"
                     /translation="MQEQITQEKDLSTLKTFKRLWPTISPFKAGLITGAVALVLNALV
                     DSSLIYLLKPLLDEGFGQANNDFLKLMAVLVVVFILVRGITNYIASYCLAWVSGKVVM
                     TLRRHIFQHLMYMPVSYFDNNPTGRLLSRVTYDTEMVASSASHSLVTIVREGAYLLSL
                     FVVMIYTSWQLSIVLFVMAPIIGVLISFVSKYFRQLSRNIQSSMGELTVTTEQMLKGH
                     KVVLSFGGQEIEKARFDRVSNDMRRKGMKVVSADGISDGVVQLIASFALSAVLYVATF
                     PEVMSENLTAGSFTVVFSSMMAMLRPLKSLTNVNSQFQRGMAACQTLFEFLDLKTEKD
                     HGLISVAKAEGNVEFKKVSFSYEGKEEKALDNISFTIPKGKTVALVGRSGSGKSTIAN
                     LLTRFYDVTDGQILLDGINIQDYRLKNLREQCSVVSQQVHLFNDTIANNIAYAAIDKY
                     SREEIIAAAKAAHAMEFIEKLENGLDTVIGENGASLSGGQRQRLAIARALLRNSPVLV
                     LDEATSALDTESERAIQSALEVLQKDRTVLVIAHRLSTIEKADEILVVDHGNIIERGS
                     HTELLAQGGAYKQLHSLQFGA"
     gene            12892..13524
                     /gene="lolB"
                     /locus_tag="PXC99_001317"
     CDS             12892..13524
                     /gene="lolB"
                     /locus_tag="PXC99_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein localization protein LolB"
                     /protein_id="HDL5417772.1"
                     /translation="MKKLTKLLSLSALLVLTACNSVLNASTEVQQPTVQIPHDDPQWQ
                     QHLAKLSQIQGYTATGQFGYISPEERFSSHFNWRYTNPIQFGLELSSNLSTKSLKLER
                     NKRGLTVSDNEGNSRSDRDVDALMQEIIGVSFPIDQFAYWVKGLPEKDGNYIVNEKRQ
                     LSQFSYPLNGTLWKASYVEYHEDRVPNLPKLIVLENGTQTLKIRIEKWAY"
     gene            13512..14366
                     /gene="ispE"
                     /locus_tag="PXC99_001318"
     CDS             13512..14366
                     /gene="ispE"
                     /locus_tag="PXC99_001318"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HDL5417773.1"
                     /translation="MGVLMKKVTLPSPAKLNLFLYITNKRADGYHELQTLFQFLDFGD
                     EIEIEITESSEVELINPVEGVATEENLIYRAAKLLQKTTACRQGCRIGIKKNLPMGGG
                     VGGGSSNAATVLVGLNHLWNTELSLEKLAELGLSLGADVPIFVRGMAAFAEGVGEVLT
                     PCDPQEKWYVVLKPEVSISTAAVFTDPNLPRNTPKRPLAELLSLPWENDCEKVVREKY
                     SAVEDLIQELLQYAQFRLTGTGACIFAEFETKAEAEQVFAHKPEAVFGFVAKGQNISP
                     LHQMLFQI"
     gene            14392..15342
                     /locus_tag="PXC99_001319"
     CDS             14392..15342
                     /locus_tag="PXC99_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HDL5417774.1"
                     /translation="MTDIKLFAGNATPELANRIAKHLYTSLGNATVGRFSDGEIQVQI
                     NENVRGGDIFIVQSTCAPTNDNLMELIVMVDALRRASAGRITAVIPYFGYARQDRRVR
                     SARVPITAKVIADFLSSVGVDRVLTCDLHAEQIQGFFDVPVDNVFGSPVLIDDILKKS
                     DLVNPIVVSPDIGGVVRARAVAKLLNDTDMAIIDKRRPKANVSQVMHIIGDVADRDCI
                     LVDDMIDTGGTLVKAAEALKERGARRVFAYATHAVFSGTAAQNLANPALDEIVVTDTI
                     PLSNEIKALNKVRVLTLSGMLAEAIRRISNEESISAMFDA"
     gene            15420..16430
                     /gene="pyrD"
                     /locus_tag="PXC99_001320"
     CDS             15420..16430
                     /gene="pyrD"
                     /locus_tag="PXC99_001320"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HDL5417775.1"
                     /translation="MYSLIRKLLFALDTEKAHQFSIQALALAGKSPFSILPTPDNPTQ
                     VMGLTFKNPIGLAAGADKNGEAIDGFGKLGFGFIEVGTITPLAQDGNPKPRQFRIVDA
                     EGIINRNGFNNKGVDVLVENVKNATYSGILGINIGKNAVTPIEHSFDDYQICLRKVYQ
                     YADYVAVNISSPNTKNLRSLQYGEALDDLLRNLKNEQAQLSQKMGKYRPLVLKIAPDL
                     TDEEIVSVADSLIRYQIDGVIAGNTTLSRESIAGLPYSEQLGGLSGKPLHSLSTRLIS
                     KLSAELGERIPIIGCGGVHSLESGQEKVNAGASLLQVYSAMIYQGPSLIQTLAKHLQL
                     NS"
BASE COUNT         4752 a         3125 c         3826 g         4819 t
ORIGIN      
        1 acttggaagt gttccctatt attttgagta aggtaggggc gctttatatg agtagctttt
       61 tatttcatcg aaatgcggtg tatggaaccc atgagctact taagtcaata ctttgattag
      121 aacggaatat catcatcaaa attgttcatt gccggctcag gctgtggtgc cggtttagat
      181 tgcggtgcag cactttgggt ttggttgtaa ccataattgc tgttgccttg attgtagcta
      241 ttacccgcag gagcagaatt tccccaaccg ccttgctgac cgcccatatc attaccttga
      301 cggctgccga gcatttgtag cacatcgcct tgaatttcgg tggtgtaacg atcttgcccg
      361 ttttggtctt gccatttacg ggtttttaaa cgtccttcta cgtaaacttg agagccttta
      421 cgtaaatatt gcccgcatac ttctgcttga cggcggtaga atacaatacg atgccactcg
      481 gttacttcac ggcgtgcacc ggtgttttta tccgtccagc tttctgaggt tgccacacta
      541 atatttgcaa ccgcttcgcc atttggcatt gtacgcattt cagggtcgtt acctaaatta
      601 ccgacaataa ttactttatt gataccagcc ataaaatcct ctgtttgata aattaaacta
      661 aaatttgcta agtattctac ctgaaaatcc aaaagatgaa caccaaaaaa ctgatatttt
      721 gtacagtttt attaaaatat gcgataatga tcgaaaattg agaaaatagc actggacatt
      781 aaaaatatgc aacatatcga tattcgtgga gcaagaacac acaacttaaa aaacatcaat
      841 ttaaccttgc cgagagataa attcattgta attaccgggc tttccggctc gggcaaatcg
      901 tctctggcgt ttgatacgct ctatgcggaa ggacaacgcc gttatgtaga atcactgtct
      961 gcatacgccc gccagtttct ctccttaatg gaaaagcctg atgtggatca tattgaaggg
     1021 ctttcccctg cgatttcgat tgagcaaaaa tcaacctctc acaacccacg ttcgaccgta
     1081 ggaacggtaa cggaaattca cgactattta cgtttattgt ttgctcgagt gggcgagcct
     1141 cgttgccctg accacgatgt gccattggct gctcaaacta tttcgcagat ggtggatcga
     1201 gtattggaag aaccggaagg aaaacggttg atgctacttg cccctgtggt gaaagagcgt
     1261 aaaggcgaac acgtaaaatt attggaaaat ttgaccgcta gtggctattt gcgggctaga
     1321 attgacggtg aaatttgcga tttatccgac ccaccggcat tagaattaca gaaaaaacac
     1381 accattgaag tggtggtgga tcgctttaaa gtaagggctg atctagccac ccgtttggcg
     1441 gaatcttttg aaacagcgtt agatttatcc ggctctaccg caattattgc agatatggac
     1501 gacccaaatg ccgaagaaat tgtgttttcg tccagctttg cttgtccgca ttgtggttac
     1561 tctttacacg aattagaacc acgccttttc tcgtttaaca acccggcagg tgcttgcccg
     1621 acttgtgatg gtttgggcgt tgagcagttt tttgatgcca aaaaagtagt gcaaaatgaa
     1681 gaggtttcat tagccgccgg tgcgatcaaa ggctgggatc gccgcagttt ctactatttt
     1741 ggcttattaa aagccgttgc cgagcattat ggctttgatt tagaaacccc attcgggcag
     1801 ctaccgaaaa aatatcaaaa cattatttta aacggcacta aagaagagat tgagtttgtt
     1861 tatgtcaatg accgaggcga taaggtcaaa cgtaaacacg cttttgaagg ggtgctgaat
     1921 aatatggctc gccgctataa agaaaccgaa tcaaactcgg tgcgtgaaga gttggcgaag
     1981 tatattaata atcgtccttg tatggattgc gaaggctcac ggttacgccg tgaagcccgt
     2041 tatgtattct tagataaaac caatttgccg atggtttcgg aaaaaagtat cggcgaggca
     2101 ttaacctttt ttgaagagct gaaattagcc ggtcagaaag aaaaaattgc tgagaaaatc
     2161 ctcaaagaaa ttcgtgaacg gctacagttt ttagtgaatg tcggcttgaa ttatctttct
     2221 ctttcccgct cggcagaaac cctttcaggt ggcgaggctc agcggattcg ccttgccagc
     2281 caaattggtg cgggtttagt aggggtaatg tatgtgctgg atgagccttc catcggcttg
     2341 caccaacgag acaatgaacg cctactgaat actttggtgc atttacgcaa tttaggcaat
     2401 accgtgattg tggttgaaca cgatgaagat gcgatccgag ccgcagatca tatcgtggat
     2461 ataggcccgg gtgccggtgt acacggtggg caagttatcg cacaaggtac ggcagctgaa
     2521 attatgcaaa ttgaggaatc tattaccgga caattcctct caggcaagca aaaaattgag
     2581 attccggctc agcgtgtgcc ttatgagcca actaaattgc tcaccttatc gggagcaagt
     2641 ggtaacaact tgaaaaaagt gaaattagag attccggttg gtttatttac ttgtatcacg
     2701 ggtgtatcag gttcgggcaa atcaacttta gttaatgaca cactattccc tctggcacag
     2761 aatgcgttaa accgagcgga aaacagcgat gttgctcctt atgaatcgat tgacggctta
     2821 tcgcattttg acaaggtaat tgatattgac caaagcccga ttgggagaac tcctcgctca
     2881 aatccggcaa cttacaccgg attatttacg ccaattcgtg agatttttgc cggcacgcaa
     2941 gaagctcgag ccagagggta taacgtaggg cggtttagct ttaatgtgcg gggcggacgt
     3001 tgcgaagcct gtcaaggtga cggcgtgatt aaagttgaaa tgcacttctt gcctgatgtg
     3061 tatgtgcctt gcgatcactg taaaggcaaa cgctataacc gtgaaacctt ggaaattcgc
     3121 tataaaggca aaactattca ccaagtgtta gagatgacgg tggaagaggc gagagaattt
     3181 tttgccccta tgccgatgat tgcccgcaag ttgcaaacct tgatggacgt ggggttatct
     3241 tatatccgtt tagggcaatc ttctactacg ctctcaggcg gtgaagccca acgggtgaaa
     3301 ttggcgaccg agctttccaa acgagacacc ggcaaaacgc tctatatttt agatgaaccg
     3361 accaccggct tgcattttgc cgatattaaa cagttactcg gcgtgctaca tcgcctgcgt
     3421 gatcaaggca atacgattgt ggtgatcgaa cataatttag atgtgattaa aaccgcagac
     3481 tggattgtcg atcttggccc tgaaggtggc agtggcggcg gtgaaattat tgctaccggc
     3541 acaccggaag aagtggcaaa agacaaacgt tctcacaccg cacgcttctt aaaagagatt
     3601 ttggctaaag gctaacgttc aacacaagcg gtcatatttt cggaaaatgt tgcaatttgc
     3661 aaaaagttgg aaaatatgac cgcttgtttt atatccggag ttattcctag ttagcctgtc
     3721 tgattttgtc gaaggcagat tcaagatcgc tactgaattg aatttgcggg atttcgttta
     3781 ccgttttttg tgagcggact agcattctca tcggctgaaa ttgcacatta cagagatgaa
     3841 gttgttgatg tggcaacata tgctgtacaa agcgggttag ggcgtgaatg ccaccagcat
     3901 ctaatactgt aacggcatcg cattgcagca caatatgttt aatttggtga tcggtatgta
     3961 cggttttatt gtgcagatcg gcaaagagat tatcggcggc agcaaaaaat aacggaccgc
     4021 tgatccgata aaccaacaca tcgttcaaat cggttgggtg agccatttca aaggatttag
     4081 tcatttctgc aatagtacgg ataaatagca ggcttgccag taacacccct accgtaatgg
     4141 caattaccat atcaaataat accgtgaggg taatgcaagt cagtaaaacc gcaatttcat
     4201 ttttacctga acggcgggta agttgaatga tttgtggaat atctgccata ttccaagcta
     4261 ctaccaataa tagtgcagcc attgaggaaa gaggcaaata ggaaagtgct ttagccaaaa
     4321 agagtagggc aaataaaacc aacaaggcgt gaaccacact agaaatgggg gaaactgccc
     4381 cggaacgaac attggcagcc gatctcgcaa tcgctgctgt ggcggtaatt ccccctaaaa
     4441 atggcgaggc aatattacct aagccttggg ctaatagttc gttgttagag tggtgcttgg
     4501 tatctgtcat attatcgcac actaccgcac ataataacga ttcgatagcc ccaagcattg
     4561 ccattgaaaa ggcagccggt aataaggctt gaatggtggt taagttccaa tctatccgat
     4621 tcccctctgc attcgggaga ttccaaggta acacaaattc aggtaatacg cttgggatac
     4681 catacccagt ggtgccgtca gagagcgtgt agtggaatgc tgagccgata gtggcaacgt
     4741 tttgtccgaa atgaatcagc agtaatgata acagcgtgcc gataaagacg gcgggtaaat
     4801 gcccgggaat aggcaaccgt agcttgtgcc aacgagttaa aaccaacaat gttacgacac
     4861 ccactaaggt gtcagcccaa tttatggttg gcaatgctga aaaaatagcc tctagcttgc
     4921 caagatagtg ttcaggcatt ttttcaatgc ttaagcccag aaaatctttg atttgcaagg
     4981 tggcgatcac aataccgatg ccacaggtaa aacccagtgt gacaggtaga ggaatgtatt
     5041 caattaagcg tcctaatcgg agtaacgcca tcaatactaa aattcctccg gaaagcattg
     5101 ttgccatgag taatccactt aagccaaact gctgcgtgac ggggtataga atcaccacaa
     5161 aagcggctgt tgggcctgaa atattaaatc ttgaaccgcc tgttagggca atcacaatcc
     5221 cggcaacaat cgccgtatat aaaccgtgct gtggtggcac accgctggca atcgccaacg
     5281 ccatagataa cggaatagca ataacgccaa cggttaagcc tgaaataata tctctgatta
     5341 aatgttgttt accataacct gcattgagag catcttttaa tgcactaaaa ggcttgacgg
     5401 caagaaaagc atttttagtt aaaaaccatt tatttaacat agaatgttcg agtgaagaga
     5461 atgtttcgct tattttactg caatgaataa aattaaattt gagctaacgc aagaaaaagc
     5521 aggaaagacg aaatatgttg gagacaagcg gttgttttag gcgaaaaatt tgcaaataca
     5581 aataattagc tgattttatt ttgaaaatag cgtaaaatgc cactttaatt tgtactacta
     5641 tagtagtgca tttgtgtgat ttcattaact ataataaaca aatggacagt cttattcatt
     5701 ttttgagtgc ctttttaact aatatcactt ggattggggc gttagagctg gggttaattt
     5761 attcccttgt tgcccttggg gtattaattt cttataaaat tctggatttt ccggatctga
     5821 ccgcagacgg cagtttccct ttaggagggg cggtgtgtgt gatcagcatt ttgaatcaag
     5881 ttgatccttg gctggcaact ttatacggca cgcttgccgg agcagtagcc ggtatggtta
     5941 ctgcaagttt gcatatcggc tttaaaatcg aaaaattgct tgccagtatt ttaatgatga
     6001 tcgcactcta ttcgattaat ctacgcatta tgggaatgcc gaatattgct attttaggcg
     6061 aaaccacgat ttacgatgta atgccgattg aaagcgatct acagttagcc ttagtacgat
     6121 tagtgatggc attgctggtt gttattatcg taaaaggttt gtttgacctc ttttttgcga
     6181 ccgaaatcgg tttggctgtg cgggcaaccg gtactaatag tcgaatggcg aaagcacagg
     6241 gtattgcgat taataaaatg acgattttag ggatggcgat ttctaatgcg ttaattgcct
     6301 taggtggtgc tttgtatgtg caaagcaacg gtggtgtaga tatttcgatt ggggtaggaa
     6361 ctatcgtgat tggcttggcg gcggtaatta tcggggaagc aattttttcg gtaaaacgga
     6421 ttatttggct tacctttgcg gtgattattg gctcaattct ttatcgtttc ttcatcgcac
     6481 tagcattaaa taacgaaact ttaaacggca ttggctttgg cccgcaagat ctgaatttaa
     6541 ttacggcgtt attggtggtg attgtattag cggttcctcg aattaaacac aaattgctcg
     6601 gtaagcgagg ttaatatgat tgaactcaat aacttattta ttaccttcaa caaagggaca
     6661 gcaattgaga accctgtgct gagaggctta tccctaaaag ttgagcaagg cgaatttgtg
     6721 tcggtaattg gtagcaatgg ggcgggtaaa tctaccttat taaatgcgat cagtggtgat
     6781 tgtgcggtgg actccggtga gattttaatt caaggaaata aggtaaacca atccaccact
     6841 tggcaacggg caaatcaagt cgcccgagtt ttccaagacc cgatggctgg cacttgtgaa
     6901 agtttaacga ttgaagaaaa tatggcactg gcttaccaac gtggacgtaa acgtgggttg
     6961 ggctttgcga tcaaacgcca aatgcgagag ttattcaaag acaaacttgc tttgttaggg
     7021 ctaggtttgg aaaatcggct tactgatcaa atggggcgtt tatcaggcgg gcaacgccaa
     7081 gcggtgagct tgctgatggc atcacttcag ccgtctaata tcttattgtt agatgaacac
     7141 accgcggcac tggatccgaa aaccaccgat tttgtgcttg aacttaccaa taaaattgta
     7201 agagaacaga aattaaccac gctaatggta acgcattcaa tgcggcaagc ccttgactat
     7261 ggcgatagaa ccgtgatgtt acaccaaggg caagtggcgt ttgatgtttc gggcgagcaa
     7321 cggcaaaaaa tggacgtgcc ggatctgtta caacttttcc aacaaagtcg ccacgagcag
     7381 ttgagtgacg atggattatt actcggcaat taattttgcg atctgcatcg aaaaaatgaa
     7441 tttctccttt tgtttttggc tgtcaaattt taaataataa gcccaaaagg aggtattcaa
     7501 tgttaagcat tttcaaaaca ccggtagaga aagaaacgct agacgattgg gctaaaattt
     7561 cggttgatgt agcgaaagtt gcgattttgg caattcctgt tatacttttt ggcaaagaac
     7621 caacgttgat taaattgact aacttagcat tattggtatt gagtatttat gtttttttga
     7681 cgcttgggcg aaaattacgg cagctaaagg aggtgttgtg atggaactag gctggaattt
     7741 aaccataggt ttgctaattt taaacgtctt tgcgtttgct tggctttata ttattaaccg
     7801 gatttctaaa gaacaattat ccaaaaatca ataatattta atttttcaca agcggttgtt
     7861 tttgcaaaat attttgtaaa ttcgaccgct tgcctgtttt taaatgacaa aatacgacga
     7921 taaaattcag catgcattta gcgaaaatgg gttgctcagc caaaatatca gtggatttcg
     7981 accacgccaa gcacagcttg aaatggctca agtggtcgca aaagcagtaa aatttgcgac
     8041 acctgttgtg gtagaggcgg gaaccggcac aggcaaaacc tttgcttatc ttgtgccggc
     8101 actactttca ggcaagaaaa ctattctttc gacaggttct aaaaacctgc aagatcaact
     8161 ttttaatcga gatcttccca ctattcaaaa agccctgaaa tacaaaggca aaattgcgtt
     8221 actcaaaggg cgtgcgaact atttgtgttt agagcgttta gatcaagtga ccgcaatggg
     8281 cgtacttggg gataaatccg ttcttaccga tttaaaaaaa gtcagtaaat ggcaaaatgc
     8341 cactaaaaca ggggatttaa gtgaatgtat taccattgcc gaagatagcc cgattctacc
     8401 gcagttagtt agcaccaccg agagttgctt aggctcggac tgcccgcatt ttaaagattg
     8461 ttatgtggta caagcccgcc gtaaagcgat ggaggcagac gtagtggtgg taaaccatca
     8521 cctattctgt gctgatatgg cagtaaaaaa gaccggtttt ggtgagttga tccctgaagc
     8581 tgagctggtg atctttgatg aagctcacca actgccggat attgccagcc aatattttgg
     8641 gcaatcgctt tcttcccgcc agttatttga tatttgtaag gataccaata ttgtttaccg
     8701 cactgaactc aaagatctgt ctcaattagg caaagcggct gatcacttga cgaaagtagt
     8761 gcaagatttc cgattattga tgggcggaga agggcagatt cgaggcaatt tgcgagagtt
     8821 atttcgtgat aaaaaagtgg tcgatggctt ggtaaaagtg gctgaaaata ttgatttttt
     8881 aagtgaagtg gcgaaaaaat cgctggggcg gtcggaaacg ttggataaaa ttttcgagcg
     8941 gttagcagaa gttaaggttc aacttaaaaa attaatggat actagtgtga caggctattg
     9001 ttactggtat gaggcgaatg gacgatcctt tgggctgcat attacgccgc ttatggtggc
     9061 agataaattt ggtgaacagt tgaagaacca gcaaattggt tgggtgttta cctcagccac
     9121 actcgaagtt gggggcaaat tcgatcattt ttgtcaacgg ctgggcatcg aaaatgcgga
     9181 gcagttggtg ttacaaagtc cgtttgatta ccaacatcaa tctttactct gtgtgccccg
     9241 ctacttgccg gataccaata aatccaatac tttaactgct ctcgggcaat tattaaaacc
     9301 ggtgattgag gcgaataaag ggcgttgttt cttgctttgt acttcctatt atatgatgcg
     9361 aggtttagcc gactttttac gcgaacacag ttcgctgaat gtgttattgc aaggcgaaac
     9421 cagcaaaagc cgtttattgg aaaaatttgt gaaagaagat cacagcgtgt tggtggcgac
     9481 ccaaagtttt tgggagggga ttgatgtgcg aggcgatgat ttatcgttgg tgattattga
     9541 taaattgccg ttcacttcac cggacgaacc attactcaaa gcccgaatgg aagattgtaa
     9601 gatacagggc ggtgatccgt ttaacgatat tcaaattccc gaagcggtga ttaccctcaa
     9661 acaaggtgta gggcgtttaa ttcgtgatgt gaccgataga ggtgtagtga ttatttgtga
     9721 ttcccgtttg gtgatgcgaa attatgggca aactttcttg aaaagtttac cgccgtctag
     9781 acgcactaga gatttgggga atgttattca atttttgaaa caaaaatagg gttacaagcg
     9841 gtcagatttc tgcagatttt tgcaaaaaaa cggataaaaa taaccgcttg ttgaggagtt
     9901 atatgttgtc tacattgctg cgtatggttg cttctttggc attgttattt gtgatgcttt
     9961 atttaggcaa gttaatcgtt tatctattcc ccatcgggat cccggatagt attttaggta
    10021 tgcttatctt attcggctgc ttggttatcg gcattgttaa agtggaatgg gtgataccga
    10081 gcgcgaaacc gctcacacgt tatataacac tatttttcct tccgatttgt gtcgaactca
    10141 tcgaacatct tgagctgtta cgccaaaatc tgaacacttt tgtattagca acggcattaa
    10201 gcaccttagt ttctgtggtc gcgattggcg tgtttgcaca gtggattttt cattacaaga
    10261 gagggtaaaa tgagctatct ttacactgtg ttgacggtaa tcatgtttat tgccggtttg
    10321 aaaatcagcc aaaaactcaa gagcagtttt ctgaaccctt tcttaattgc actcgctttg
    10381 ctaattggtg tattactgat ttttaatatc ccttaccaag actattatca aggtaattcc
    10441 cccttgaata acttacttgg cgtttctgtt gtggcacttg cttacccttt ttatgaacaa
    10501 ttaccccata tccgtaaaaa atggcgacag attgtcgtga ttttgctgtt tagtaccatc
    10561 attacgatga taaccgggct tgggttttca ttattatttg gggcaagcca agagatctta
    10621 gccgccattt tgcctaaatc ggtatcaatg ccaatggcaa ttattattac gaatgaaatt
    10681 aatggaaatg ttgcaatcgc agcggttggg gtgatgatcg caggcttagt gggatctatt
    10741 ttaggcttta cgcttctgcg cctggcaaaa gtaagaaatg tgatggtgat tgggttaagt
    10801 atgggagctg cttcccacgc attaggcacg gcaagatgct tagagcatag tatgaaagcc
    10861 ggtagctata gttctatcgc attagtggct tgtggtgtgc tgtcttctat atttgcacct
    10921 ttaatattta acgttatcgt cacgttatgt tactaaaaac agtgaaatct caaaccttat
    10981 ttggtaactg gctgaaatca aggtacaata ccgtgatttt tcaatgaaaa tagagaatta
    11041 tgcaagaaca aataacacaa gaaaaagatc tttctacgct taaaaccttt aagcgtttat
    11101 ggccgactat cagcccgttt aaagcgggtc tgattacagg tgctgtcgct ttagtattaa
    11161 atgcgttagt ggattctagt cttatctatc tcctcaaacc cttgctagat gaaggctttg
    11221 ggcaagctaa taatgatttt ctgaaattga tggcggtgct tgtagtagtt tttattttag
    11281 tgcgcggtat taccaattat attgccagtt actgtttagc ttgggtgtca ggcaaggtgg
    11341 taatgacatt acgccgccat atttttcaac atttaatgta tatgccggta agctattttg
    11401 ataacaaccc gaccgggcgt ttgctctcac gagtgactta cgataccgaa atggtggcga
    11461 gttctgcttc tcattcttta gtgactattg tgcgtgaagg ggcttatctg ctgtcattgt
    11521 ttgtggtgat gatctatacc agttggcagc tttctattgt gttatttgtg atggctccta
    11581 tcattggggt actgatcagt ttcgtttcaa aatattttcg tcaattaagt cgcaatatcc
    11641 aaagttcaat gggggagctt actgtcacga cagaacaaat gcttaaaggg cataaggttg
    11701 tactttcctt tggtgggcag gaaattgaga aagcacgttt tgatcgagtc agtaatgata
    11761 tgcgtcgtaa agggatgaaa gtcgtttctg ctgatggcat ttctgatggt gtggtacagc
    11821 ttatcgcctc ttttgcgtta tctgctgtgc tttatgttgc gaccttcccc gaggtgatga
    11881 gtgagaattt aaccgcaggt tcattcacag tagtgttttc ttcgatgatg gcaatgttac
    11941 gtcctctaaa atcactcacc aatgtgaact cgcaattcca acgtggaatg gcagcctgcc
    12001 aaacgttatt tgaattttta gatttaaaaa ctgaaaaaga tcacggctta atctccgttg
    12061 ctaaagctga aggcaatgtg gaatttaaaa aggtaagctt tagttatgaa ggtaaagagg
    12121 aaaaagcact cgataatatt tctttcacca ttcctaaagg caaaacagta gcattggttg
    12181 ggcgttccgg ctcgggtaaa tcaactattg ccaatttgct tacccgtttt tatgatgtga
    12241 ctgacggtca aattttgctt gatggaatta atattcaaga ttaccgctta aaaaacttaa
    12301 gagaacaatg ctcggtggtt tctcaacaag ttcatttgtt taacgatact attgctaata
    12361 atattgctta tgctgcaatc gacaaataca gccgagaaga aattattgct gctgcaaaag
    12421 ctgcacacgc aatggaattt atcgaaaaat tggaaaatgg cttagacact gtaattggtg
    12481 aaaatggcgc aagtctttcc ggtgggcaac gccaacgctt ggcaatcgct cgtgcattac
    12541 tgcgaaattc tcctgtgctt gtgctggatg aagctacctc tgcattagat acggagtcag
    12601 aaagagcgat ccaatctgca cttgaagtgc tacagaaaga tcgtacggtg ttggtcatag
    12661 cacaccggtt atcaacgatt gaaaaagccg atgaaatttt ggtagtcgat cacggaaata
    12721 ttattgagcg tggcagccat acggaattgt tagcacaagg tggggcttat aaacaactcc
    12781 atagtttaca attcggagcc taatttgtag gggagaaata tgtttctccc caattaatga
    12841 taaaaacagg gcgaaaaata tttcgtccct acaataattt atttggatac tatgaaaaaa
    12901 ctgacaaaac ttttatctct tagtgcttta ctggtcttaa ccgcctgtaa ttcggtacta
    12961 aatgcctcaa cagaggtgca acaaccaaca gtacaaattc cgcatgacga tccacaatgg
    13021 cagcagcatt tagcgaaact gagccaaatt caaggctata ctgcaacggg gcaatttggc
    13081 tatatttcgc ctgaagagcg tttttcttcc catttcaact ggcgttatac taatccaatc
    13141 caatttgggt tagagctttc ctcgaatctc tcgactaaat cactgaaatt agagcgtaat
    13201 aaacgaggct taacggtttc ggacaatgag ggtaatagcc gttctgaccg tgatgttgat
    13261 gcgttaatgc aagagattat cggtgtttcg tttcctatcg atcagtttgc ctattgggta
    13321 aaaggcttgc ctgaaaaaga tggcaactat attgtgaatg aaaaacgcca gctgtcgcaa
    13381 tttagttatc cgcttaatgg cacgctttgg aaagcaagct atgtggagta tcacgaagat
    13441 cgtgtaccaa acttaccgaa gctgattgtg cttgaaaacg gcactcaaac gttgaagatc
    13501 cgcattgaaa aatgggcgta ttaatgaaga aagtcacctt acccagcccg gcaaaattaa
    13561 acctgttttt atacattacc aataagcggg cagacggtta tcacgagcta caaacgctgt
    13621 ttcagttttt agattttggt gatgaaattg agattgagat cacagaaagt tcagaggttg
    13681 aattaattaa tccggtagaa ggggtggcaa ctgaggagaa tctcatttac cgagcagcaa
    13741 aacttttgca aaaaacgacc gcttgtaggc aaggctgccg tattgggatt aaaaaaaacc
    13801 taccgatggg cggaggtgtt ggtggtggat cttctaatgc tgcaacagta ttagtcggtt
    13861 taaatcactt gtggaatacc gagctttcat tggaaaaatt ggcagaatta ggcttaagtt
    13921 taggggctga tgtgccgata tttgttagag gtatggctgc ttttgccgaa ggcgtggggg
    13981 aggtgttaac tccttgtgat ccacaagaaa aatggtatgt agtgctaaaa ccagaagtgt
    14041 cgatttcaac cgcagcggtg tttaccgacc cgaatttacc tagaaatacg ccaaaacgcc
    14101 ccttagccga attattatct ttaccgtggg aaaacgattg cgaaaaagtt gtacgagaaa
    14161 agtattctgc ggttgaagat cttatacaag aattgttaca atatgctcag tttaggctaa
    14221 caggcacagg tgcttgtatt ttcgccgaat ttgaaacaaa agcagaagcc gagcaggttt
    14281 ttgcacataa accggaagcc gtcttcggtt ttgtggcgaa agggcaaaat atttcgccat
    14341 tacatcaaat gttattccaa atctaaccat cttaacctta aggatcaatc catgacagat
    14401 attaaactgt ttgcgggcaa cgcaactccg gaacttgcta atcgtattgc aaaacatctt
    14461 tatacctcat taggtaatgc aacagttggt cgttttagcg atggtgaaat tcaagtacaa
    14521 atcaatgaaa atgtgcgtgg aggcgatatt tttattgtgc aatccacttg tgcaccaact
    14581 aatgataatt taatggaatt gatcgtgatg gtagatgcgc ttcgccgtgc atcagctggt
    14641 cgtattaccg cagtgattcc gtatttcggt tatgcacgcc aagacagacg cgtgcgttcg
    14701 gcccgtgtgc caattaccgc aaaagtgatt gctgatttct tatccagcgt aggggtagat
    14761 agagtcttaa cctgcgactt acacgcagag caaattcaag gtttctttga tgtgccggta
    14821 gataacgtat ttggttcccc tgtgttaatc gatgatattt tgaaaaaatc cgatttggtc
    14881 aaccctatcg tggtttctcc agatattggt ggggttgttc gtgcaagagc ggtggcaaaa
    14941 ttattaaatg ataccgatat ggcaattatt gataaacgtc gtccaaaagc gaatgtatca
    15001 caggtaatgc acattatcgg tgatgtggct gatcgtgact gtattttagt tgatgatatg
    15061 atcgatactg gtggtacttt agtcaaagcg gctgaagcgc tgaaagaacg tggcgcccgt
    15121 cgtgtctttg cttatgccac acacgcggta ttttcaggca cagcagctca aaatttagcg
    15181 aatcctgctt tagatgaaat tgtagtaact gatactattc cactgagtaa tgagattaaa
    15241 gcattaaata aagtacgtgt tttaacatta tccggtatgt tagcagaagc aattcgccgt
    15301 attagcaatg aagaatccat ttcagcaatg tttgatgcct aatttatgag aaaaaaccca
    15361 gtcgaaagat tgggtttttc atatctgttc actactatat ttagtttaag ataatttgta
    15421 tgtattccct gattcgtaaa ttactttttg cactagatac ggaaaaagca catcaattct
    15481 ctattcaggc acttgcttta gccggaaaat cgcctttttc gattctgcca acacccgata
    15541 atccgaccca agtaatggga ctcacgttta aaaatccaat agggcttgca gccggagcgg
    15601 ataaaaacgg tgaagcgata gatggttttg ggaaattagg atttgggttt attgaggttg
    15661 ggactattac tcctctcgct caagacggaa accctaaacc gaggcaattt cgtattgtag
    15721 atgcagaggg aattattaac cgcaatggat ttaataataa aggcgttgat gttttagtag
    15781 aaaatgtaaa aaatgcaacc tatagtggta ttttaggtat taatattgga aaaaatgcgg
    15841 ttacaccaat tgagcatagc tttgatgact accaaatttg tttgcgtaag gtttaccaat
    15901 atgctgatta tgtggcggtg aatatttcat cacccaatac caaaaatttg cgcagtttac
    15961 aatatggtga ggcattagat gatttgctgc gaaacctcaa aaatgagcag gcacaacttt
    16021 cgcaaaaaat ggggaaatat cgaccgcttg ttttaaagat tgcgcctgat ttaaccgatg
    16081 aagaaatcgt ttctgtagcc gatagtctta ttcgttacca aattgatggg gtgattgccg
    16141 gcaatactac cttgtctcgt gaaagtattg ccggattacc gtattcggaa caactgggtg
    16201 gattaagtgg caagccatta cactcattaa gtacaaggtt aatttcaaaa ttatctgccg
    16261 agttgggcga gagaatacca attataggtt gtgggggagt ccattcgtta gagagtgggc
    16321 aggagaaagt gaatgcaggt gctagtttat tgcaagtcta ttccgcaatg atttaccaag
    16381 gaccatcatt aattcaaacc ttagccaaac accttcagct gaacagttag ggatagattt
    16441 ctagttaaaa atgattggtt aggtttattt ctgtcatctt agtggaatag atggcggtat
    16501 tagctatcta tcaaaaatag ac
//
LOCUS       DANLVT010000048        16192 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.048, whole genome shotgun sequence.
ACCESSION   DANLVT010000048 DANLVT010000000
VERSION     DANLVT010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16192)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16192)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16192
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.048"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..332)
                     /locus_tag="PXC99_001321"
     CDS             complement(<1..332)
                     /locus_tag="PXC99_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase family
                     protein"
                     /protein_id="HDL5417776.1"
                     /translation="MKSLVIKLFGTKKEKKTFKFSKIESVLLKPIGDAIGDAVVHIAH
                     LEQIKKALPNVKIAVLVTSRNKLIFSQANVVDMILEDKVSTYLSQRGHWDLYLDFKPT
                     FTTKSIIL"
     gene            380..1411
                     /locus_tag="PXC99_001322"
     CDS             380..1411
                     /locus_tag="PXC99_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL5417777.1"
                     /translation="MNIKATLRKARLVIGKAILDSKNTDLILSEIPNKILFLRHDGKI
                     GDYVVSSFVFREIKKQSPQTQIGVVCSQKNRYLFENNPYIDKLYLVKTKSIPDYIRGG
                     KQLAKEQYDVVIDPTVTLRNRDLLFLRTISAKHYVGYQKQKYRLFDLNVEDRKQHFSE
                     IYQDALALIGFENIETQYDVPLNATSNQSIKHYLYENQIRNYIALNLFGAGSARRFSE
                     QKINELLSCLKQHSDKPIVLLTFPEVTAKLCSFTKKYKNIFVYEKTKSVFDSIELIRF
                     ADLLISPDTATVHIASGLSKKIIAFYSSDEQNFIHWHPNNQAETHILRFRKSVNDLDF
                     AAIKPEWLK"
     gene            1413..2303
                     /gene="ilvY"
                     /locus_tag="PXC99_001323"
     CDS             1413..2303
                     /gene="ilvY"
                     /locus_tag="PXC99_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator IlvY"
                     /protein_id="HDL5417778.1"
                     /translation="MDFQSLKLFLDIAQSRSFIRSAEKNYMTASTLTRHIQRIEEELG
                     QPLFLRDNRQVRLTEAGERFLAFAQQGWAEWQQLQNQLSPAQGDLEGELKVFCSVTAS
                     YSHLPPILGKFRQKYPKVDIKLSTGDPALALEQVQSLAADISVAGKPEFLPNNIVFHY
                     IDDIQLSIIAPRVASQATQFLQQSPIDWKNIPFILPVNGPVRKRIDRWFKEQKIKDPI
                     IYATVSGHEAIVPMVALGFGVALLPDIVIKHSPMNNQVSYVNLPSPITPFELGICVQQ
                     KRLQEPIINAFWQLLSDNSA"
     gene            complement(2437..4839)
                     /gene="lon"
                     /locus_tag="PXC99_001324"
     CDS             complement(2437..4839)
                     /gene="lon"
                     /locus_tag="PXC99_001324"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HDL5417779.1"
                     /translation="MAPRKKKAIELPLLPLRDVVVFPYMVMPLFVGREKSIQALRSAM
                     DSNKQLFLVTQQDPNKEEPNAEDMYGVGVIANIIQMLNLPDGTVKVLVEGQTRAKIEQ
                     IHDDENGFWAAIQPIYSEYDDENEELKAIAKTTLTEFENYVKNNKKIPAEIIAKLQKI
                     TLEDRLADTIASNLIAPVKKKQELLEQPNLIARFEALLIAMATEMDTLETETRIRNRV
                     KQQMEKNQRDYYLNEQIKAIQKELGNGDDVEQSELDKLKEKIDAAKLPTEVKDKLNTE
                     FKKLKAMPQSSSEATVVRGYIDWILQMPWHKKSAVKKDLAQAQEILDKDHYGLERVKE
                     RIVEYLAVQSRLNKLKGPILCLVGPPGVGKTSLGQSIANATGRKYVRMALGGVRDEAE
                     IRGHRRTYIGSMPGSLMMKMAKVGVRNPLFLLDEIDKMAQDMRGDPASALLEVLDPEQ
                     NKAFNDHYLEVDYDLSDVMFVATSNSMNIPPALLDRMEVIRLSGYTEDEKMHIARGHL
                     LAKQQENNGLKEGELTIEDSAILSIIRYYTREAGVRSLEREIAKICRKAVKALVLDKK
                     LKSITVSEKNIEEYLGVKRFDYGKMDSQNRIGEVTGLAWTEVGGDLLTIETASVAGKG
                     KFSYTGSLGDVMKESIQAAMVVVRSRAEKLGIAEDFHEKRDIHVHVPDGATPKDGPSA
                     GIAMCTALISSLTGNPVRKEVAMTGEISLRGKVLPIGGLKEKLLAAHRGGITTVIIPK
                     ENEKDLEEIPENAKAALDIHAVETIDEVLALALENPPMGIEILSKAEIKVKKSRAKAT
                     VQ"
     regulatory      5043..5161
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            5337..6434
                     /gene="ribD"
                     /locus_tag="PXC99_001325"
     CDS             5337..6434
                     /gene="ribD"
                     /locus_tag="PXC99_001325"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HDL5417780.1"
                     /translation="MTDVQYMAYAITLAEKARGWTSPNPLVGCVIVKNGNIIAEGYHQ
                     KAGSWHAERNAILNCEEDLTGATAYVTLEPCCHHGRTPPCSELLIERGIKKVFIGSRD
                     PNPLVSGKGAAQLRAAGIEVVEDFMRTECDALNPIFFHYIQTKRPYVLLKYGMTADGK
                     IATYTGNSKWITGEAARANVQKSRHEYSAIMVGVETVLADDPMLNSRMENAKQPVRIV
                     CDSQLRTPLDSQLVQTARQYRTIIATLNNDAKKQAEYTACGVEILVTGERDKRVDLAD
                     LLQKLGELGIDSLLIEGGSQLNFSVLEQGLVNRVHCYIAPKLIGGKAAKTPIGGKGIG
                     ELAQAVKLRLKSTELLGEDILLDYEVDLLRN"
     gene            6651..7298
                     /gene="ribE"
                     /locus_tag="PXC99_001326"
     CDS             6651..7298
                     /gene="ribE"
                     /locus_tag="PXC99_001326"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HDL5417781.1"
                     /translation="MFTGIIEEVGQIAQIKKQGEFVVVTVKAKKILTDVHLGDSIAVN
                     GVCLTVTSFTQEQFTADVMSETLKRTSLGELSINSSVNLERAMAANGRFGGHIVSGHI
                     DGTGVVAEITPADNSTWYRIKAEPKLMRYIIEKGSITIDGISLTVVDVDAESFRVSII
                     PHTIKETDLGTKKIGSLVNLENDIVGKYIEQFLLKKEPENPQSKITADFLKNAGF"
     gene            7317..8516
                     /locus_tag="PXC99_001327"
     CDS             7317..8516
                     /locus_tag="PXC99_001327"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP
                     cyclohydrolase II"
                     /protein_id="HDL5417782.1"
                     /translation="MFKFSTVEEAIQAIAQGKIILVSDDADRENEGDFICAAEFATPE
                     NINFMAKYGKGLICTPISTEIAKKLNFHPMVLENEDNHQTAFTVSVDHIQTGTGISAF
                     ERSLTCLKMLDENAKPEDFRRPGHVFPLVAKDGGVLVRNGHTEATVDLARLAGLKPAG
                     LCCEIMAEDGTMMQMPELQAFAQAHNMPFITIQQLQEYRRKHDSLVNVVSVVKMPTKY
                     GEFKAHSFVETISGKEHVALVKGDIGDGENVLCRIHSECLTGDAFGSQRCDCGQQFAA
                     AMNQVEQEGRGVVLYLRQEGRGIGLINKLRAYELQDRGMDTVEANLALGFKDDEREYY
                     IAAQMFEKLGVKSIRLLTNNPAKIEGLIEQGLNVVAREPIMVEPNEHDLEYLKVKQHK
                     MRHMFNF"
     gene            8722..9186
                     /locus_tag="PXC99_001328"
     CDS             8722..9186
                     /locus_tag="PXC99_001328"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HDL5417783.1"
                     /translation="MATFQGNYIATGLKFGIVATNWHKIFIDQLLNGATDKLLRHGVE
                     EKNIDTVWVPGALEISIAAKKMAQSGRYDAIICLGAVVRGATSHYDVVVNESAKGISS
                     SALETGVPIINGILTVENLEQAIERSGTKAGNKGEECAMVAIEMANLLKALA"
     gene            complement(9232..10740)
                     /gene="lnt"
                     /locus_tag="PXC99_001329"
     CDS             complement(9232..10740)
                     /gene="lnt"
                     /locus_tag="PXC99_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HDL5417784.1"
                     /translation="MNFAKNPPFLTACLLAIILGAIGTFAYSPFDIWILAFASAAGLV
                     WSATLANRKTALWATFAWSIGYFCTGVNWVSVSMTQFGGVPTIVSYIAVFLLACYLAI
                     YNLLFSVVSHRLKLNNPFALAAIFTFTEYLRGVVFTGFPWLQFGYSLIDSPFAGIAPI
                     LGVEGLTFLVIVASSYLVKIIQQENKTVPSLMVLAVIFGLSFATRFLQFVQIDTEKQP
                     LVVSLVQGNIEQKMKWDPQHFNHSVRTYEQLILPLLGNSELIILPESAIPALENQISP
                     LLGSLDHLARQHGSEIIIGTLYQNEQEELFNSSVLLGEKEREYALHSNPRYNKHHLVP
                     FGEYVPFGSVLDWMREVFILPINLSQGSFVQPSFLAKNNRFNMAICYEIIFGDQLQQN
                     QKSQNSDYLLTITNDAWFGSSIGPWQHFQMARMRALELGKPLLRAANTGITAIVDANG
                     KVIEQLPQFTADALTATIVPTKGDTPFKQLGHWLIYSFSLFCVIASLLLRRK"
     gene            complement(10799..11698)
                     /gene="corC"
                     /locus_tag="PXC99_001330"
     CDS             complement(10799..11698)
                     /gene="corC"
                     /locus_tag="PXC99_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249295.1"
                     /note="CorC(YbeX) belongs to the Cyclin M Mg2+ Exporter
                     (CNNM) family, and was characterized as belonging to a set
                     of three proteins, at least one of which must be present
                     for CorA to function; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM family magnesium/cobalt transport protein
                     CorC"
                     /protein_id="HDL5417785.1"
                     /translation="MSDEQQSVNTTEKSEKKSILHSLFSGLFQNEPKNREDLVEVIRD
                     SVENELIDSDTKEMIEGVMEISELRVRDIMIPRAQIVFIDANEPLDVCIDLIIESAHS
                     RFPVIRGEKDTIEGILHSKDLLKYLRSDSEPFNLQQVLRPAVIVPESKRLDRMLKEFR
                     SERFHMAVVVDEFGAVSGLVTIEDILEQIVGDIEDEFDEEEVKPIRQLSRHTYAVLPL
                     TDIKKFNEFFATDFNDEEVDTIGGLVMQAFGYFPKRDEQIELNGIDFKVTSANSRQLI
                     QLRVTLSDEQLEKMEKTSPNEEE"
     gene            11836..12444
                     /locus_tag="PXC99_001331"
     CDS             11836..12444
                     /locus_tag="PXC99_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2057 family protein"
                     /protein_id="HDL5417786.1"
                     /translation="MKLTKIALSLTALVVSSMSVAGTLSTSSMVDILAFDGQRVKSGT
                     TSVQMSENKTHQVVVEVGGTVEGDFFTSDQIILTFQGSAENAKLETPRLNSKLDLRKF
                     QENQTVAIKTDSGKVISHKQDFLKGEGFLAKTRVEDNLTKYNLAKKTASVEQFATAPL
                     EAKGQIVVDTNKVSQEELQLLFRKADKDTQKRFLEWAKKNIK"
     gene            complement(12525..12908)
                     /locus_tag="PXC99_001332"
     CDS             complement(12525..12908)
                     /locus_tag="PXC99_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417787.1"
                     /translation="MKTLKLGCIFSLALMLSSCTLTPEQQAERKAKQIRAEQDLQVQL
                     AKQCDVETAELMYQQFNPPLSQTEQEEKAFKKRYAEKVNAPMFQACYKLAWQNYKAQV
                     ELEEIRWNYDRDYMYRGWRYCYYCW"
     gene            complement(12938..13507)
                     /locus_tag="PXC99_001333"
     CDS             complement(12938..13507)
                     /locus_tag="PXC99_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HDL5417788.1"
                     /translation="MNETTINDFSLLCRLFGNLFYRHPTDPILAGTFNWLAQGGLRQV
                     WALNTDSQSENALTLLQKNANPTQLAASYQALFAENGAISPTISAYGLSVNNFVAFRQ
                     ERAMPELENADHIGLLFLTASWIEDNLDSALAQKILFEQFLLPCAGKFLGKIEAFDNG
                     FYKALAQLSRDALSAMADELEESELEAVE"
     gene            13566..14411
                     /gene="nfo"
                     /locus_tag="PXC99_001334"
     CDS             13566..14411
                     /gene="nfo"
                     /locus_tag="PXC99_001334"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HDL5417789.1"
                     /translation="MKYIGAHVSASGGVENAVLRSVEIGANAFALFTKNQRQWQAPAL
                     KAETIEKFKRFCKVHHFSAEQILPHDSYLINLGNPEAEALEKSRVAFIDEMSRANQLG
                     LKLLNFHPGAHLKQISEQDCLARIAESINIAVEKVPNVIAVIENTAGQGSNLGWHFDH
                     LATIIEQVEDKSRVGVCLDTCHLFSAGYDISSYEKSEAVFNDFNQTVGFHYLRGMHLN
                     GSKTPLGSRVDRHHTLREGTIGTEVFAFIMQNMHFNHIPMILETISPEIWADEIKFLR
                     TLELK"
     gene            14539..15111
                     /locus_tag="PXC99_001335"
     CDS             14539..15111
                     /locus_tag="PXC99_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL5417790.1"
                     /translation="MKKNLFATTFKPVFIASILSVFGGYSSIAVASLSSKPATPNQII
                     ASKAERLAKSSSVFTNRANLPTSSAHTANYSGRINSVYHNWVGTRYRLGGTTKAGIDC
                     SAFVREVMGKAFSKDMPRSTAEQRHVGHSISKSDLRPGDLVFFRKNNHVGVYIGNGKF
                     VHASSSRGVTTSSLSESYWSRNYTQSRRVI"
     gene            complement(15178..15636)
                     /locus_tag="PXC99_001336"
     CDS             complement(15178..15636)
                     /locus_tag="PXC99_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5417791.1"
                     /translation="MASIRQISDQTAAYQPIPLYRDFNSSRSVKLDLNSLCIKRPRDT
                     FFIHVKNPNLIAWGIELDDLLIVEQTNQYLVNDLLVLEKDGEYKFYQFFNEIQNGEGI
                     AEKILFSLDVSESNLRITDWAEVKIAGVITNVVHQMRTRGAFTQAKQRVA"
     gene            complement(15810..>16192)
                     /gene="grcA"
                     /locus_tag="PXC99_001337"
     CDS             complement(15810..>16192)
                     /gene="grcA"
                     /locus_tag="PXC99_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="autonomous glycyl radical cofactor GrcA"
                     /protein_id="HDL5417792.1"
                     /translation="IKGVQITESSNSNLLNSFWLLDEAKNEARCLAAKAGFEEDQVVA
                     ISELGDIAYREVPVNVAPTIKVEGGQHLNVNVLRRETLEDAIQNPEKYPQLTIRVSGY
                     AVRFNSLTPEQQRDVITRTFTESL"
BASE COUNT         4819 a         3145 c         3402 g         4826 t
ORIGIN      
        1 tctaaaataa tactttttgt ggtaaatgtc ggtttgaaat ctaaataaag atcccaatgt
       61 ccccgctgcg agagataagt ggatacttta tcttctaaga tcatatctac cacgtttgct
      121 tgagagaaaa tcaatttgtt acgagatgta actaaaaccg ctatttttac atttgggaga
      181 gcttttttaa tttgctccaa atgagctata tgcacaacag catcgccaat agcatctccg
      241 ataggtttga gtaatacgga ttctattttg ctaaatttga aggttttttt ctcttttttt
      301 gtaccaaaaa gttttataac taaggatttc atctctataa taggttgatt cttttaatga
      361 ttggttatag taagtaaaaa tgaatattaa agcaacgtta agaaaagcaa gattggtgat
      421 aggtaaagcc attttagata gtaaaaatac tgatctgata ttatcggaaa ttcccaataa
      481 aattctattt cttcgtcacg atggtaaaat tggtgattat gtcgttagtt cctttgtctt
      541 ccgtgaaata aaaaaacagt ctccccaaac gcaaataggc gtggtttgct cacagaaaaa
      601 ccgatattta tttgagaata atccttatat tgataagctc tatttggtta agacaaaaag
      661 tattcctgat tatattcgtg gtggcaaaca acttgcaaaa gagcagtatg atgttgtaat
      721 cgatccgact gttactttac ggaatcgtga tctcttattt ttacgcacta tatcagccaa
      781 acattatgta ggttatcaga aacaaaaata tcgattattt gatctaaatg tagaggatag
      841 aaaacagcat ttttcagaga tttatcaaga tgcgttagct ttaatcgggt ttgaaaatat
      901 agaaactcag tatgatgtgc cactaaatgc cacaagcaac caatccataa agcattattt
      961 atatgaaaac caaattagaa attatattgc gttaaatctt tttggtgcag gttcggcaag
     1021 acgttttagt gagcagaaaa ttaatgaact gctgagttgc ttaaaacagc atagtgataa
     1081 accgatagtc ttacttactt ttcctgaagt aacggcaaaa ttgtgttcct ttactaagaa
     1141 gtataaaaat atatttgtct atgagaaaac caaaagcgtt tttgattcaa tagaactgat
     1201 tcgttttgcg gacttattaa tttcacctga tactgcaacc gtgcatattg cctcaggctt
     1261 gagtaaaaag ataattgctt tttacagtag cgatgaacag aattttatac attggcatcc
     1321 gaataatcag gctgaaaccc atattctccg ttttagaaaa agcgtgaatg atttagattt
     1381 tgctgcaata aaaccggagt ggctaaaata atatggactt ccaaagcctt aaacttttcc
     1441 tagatatagc ccaaagccgt agttttattc gcagtgcgga gaagaattat atgacggctt
     1501 ccacacttac ccgccatatt cagcgtatag aggaggagct cgggcagccg ttgtttctgc
     1561 gtgataatcg acaagtgcgt ttaactgaag caggggaaag gtttttggcg tttgctcaac
     1621 aaggttgggc agagtggcag cagttgcaaa accagttgtc gcctgctcaa ggtgatttag
     1681 aaggagagtt gaaagtgttc tgctcggtaa cggcttctta cagccattta ccgccgattt
     1741 tgggaaagtt tcgccaaaaa tatccgaaag tggatattaa actgagtacc ggtgatccgg
     1801 ctttggcatt ggaacaggtt cagtcattgg ctgcagatat ttcggttgcg ggtaagccgg
     1861 aatttctgcc gaataatatt gtgtttcact atattgatga tattcaactt tcgattattg
     1921 cccctcgtgt ggcgagccaa gccactcaat ttctgcaaca gtcgccgata gattggaaaa
     1981 atatcccctt tattttgccg gtgaacggac ctgtacgaaa acggattgac cgttggttta
     2041 aagagcaaaa aatcaaagac ccgattattt atgctaccgt ctccggacac gaagcgattg
     2101 tgccgatggt tgcactaggc tttggggtcg cactgctacc ggatattgtg attaagcata
     2161 gcccaatgaa taatcaagtt tcttatgtga atttaccctc gccgatcact ccgtttgagc
     2221 tgggaatttg cgttcagcaa aaacgcttgc aagagccgat catcaacgca ttttggcaat
     2281 tattgtctga taattcagca taacaagcgg ttagattttg ctaaattttt gcaaaaaata
     2341 gagcaaaacc gaccgcttgt agataaaact ttcagataaa aaataaggtg cgtgattgtg
     2401 atctgcgcac cttatgttgt tttagattat tgcactttat tgcactgtgg ctttagctcg
     2461 cgattttttc accttgatct cggcttttga caagatttca atccccattg gcgggttttc
     2521 tagtgccaga gctagtacct cgtcaatggt ttctactgcg tgaatgtcca acgctgcttt
     2581 tgcattttcc ggaatttcct ctaagtcttt ttcattttct ttcggaataa tcaccgtcgt
     2641 aataccacca cgatgggctg ccagtaattt ctcttttaag ccgccgattg gcaatacttt
     2701 gccacgcaag ctgatttcac cggtcatcgc tacttcttta cgcacagggt tacctgttag
     2761 gctggaaatt aatgcagtac acattgcaat ccctgcactc ggaccatctt tcggtgttgc
     2821 accgtccggc acgtgaacgt gaatatcccg tttttcgtgg aagtcttcag caatgcctaa
     2881 tttttctgca cgagagcgta caaccaccat tgccgcttga atagactctt tcattacatc
     2941 gcctaatgaa ccggtgtaag agaatttgcc tttacctgca acagaagcgg tttcaatggt
     3001 taataaatca ccgccaactt ctgtccacgc taaaccggtc acttcgccaa tgcggttttg
     3061 gctatccatt ttgccgtagt caaaacgttt tacgcctaag tattcttcga tatttttctc
     3121 agaaactgta atggatttta atttcttatc caatactaaa gctttcacgg ctttacggca
     3181 gattttcgca atttcacgct caaggctacg cacgcctgct tcacgggtgt agtagcggat
     3241 aatacttaaa attgcactgt cttcaatggt cagctcaccc tcttttagtc cgttattttc
     3301 ttgctgttta gccagtaaat gaccacgagc aatgtgcatt ttctcatctt cggtatagcc
     3361 tgaaagacga atcacttcca tacggtcgag caatgctggc ggaatgttca ttgagtttga
     3421 ggttgccaca aacattacat cggataaatc gtaatccacc tctaaataat ggtcgttaaa
     3481 ggctttattt tgctcaggat ctaacacttc aagcagagca gaagccgggt cgccacgcat
     3541 atcttgagcc attttgtcga tttcatctaa caagaacagc ggattacgca cgccgacttt
     3601 cgccattttc atcattaggc tacccggcat tgagccgatg taagtacggc gatgcccacg
     3661 gatttccgct tcatcacgca cgccacctaa cgccatacgc acatatttac gccctgtggc
     3721 attggcaata gattgcccta atgaggtttt accaaccccc ggcggaccaa ctaagcacaa
     3781 aatcggacct tttaatttat ttagacgact ttgcactgct aagtattcta caatccgctc
     3841 tttcactcgt tctaagccgt agtggtcttt atccaaaatc tcttgagctt gggctaaatc
     3901 ttttttgacc gctgattttt tatgccacgg catttgtaaa atccagtcaa tataaccacg
     3961 cacaacggta gcttcggaag agctttgcgg cattgctttg agctttttga actccgtatt
     4021 cagcttgtct tttacctcgg tcggtaattt tgcagcgtca attttctctt taagcttatc
     4081 taactcgctt tgttcaacgt catcgccatt acctaactct ttttgaatcg ctttaatttg
     4141 ctcgttgagg tagtaatcac gttggttttt ttccatttgc tgtttaacac gattacgaat
     4201 ccgagtttcg gtttcaagcg tatccatctc agttgccatc gcaattaaca aggcttcaaa
     4261 acgggcaatc agatttggtt gctccaataa ttcctgtttt ttcttcaccg gagcaattaa
     4321 gttagaggca atggtatccg ccaagcggtc ttccaacgtg attttttgca gtttagcaat
     4381 aatttccgcc ggaattttct tgttattttt aacgtaattt tcaaattcgg ttaaagtggt
     4441 tttagcaatc gcttttaact cttcgttttc gtcatcatat tccgaatata ttggctgaat
     4501 tgccgcccag aagccgtttt catcatcgtg aatttgctcg attttggcac gggtttgtcc
     4561 ttctaccagc actttaactg tgccgtccgg caggtttaac atttgaataa tgttggcaat
     4621 tacacctacg ccatacatat cttctgcatt cggctcttct ttatttggat cttgctgagt
     4681 gactaaaaac agttgtttat tggaatccat cgccgagcgt agggcttgaa ttgatttttc
     4741 acgtcctaca aataacggca taaccatata aggaaaaacc accacatcac gcaatgggag
     4801 tagtggtaat tcaatcgctt tcttttttct tggtgccata aatttgctct ctctatcaaa
     4861 atataatccc ccattatgag ggcgaatttg ggaaaaacaa gggaaaattt gatttatctt
     4921 aaaaaaactc gaatagtcaa aacagtagat gttggcgatt taatcaattg ttaaaatcag
     4981 ggtaattagc ttaatttccc gcttgacatc aaatcgtaat gcgagcaaaa tcccctgcat
     5041 attttaatct tcagggcagg gtgaaattcc cgatcggcgg taaagtccgc gagccgagca
     5101 atcggcagga tttggtgaaa ttccaaaacc gacagtatag tctggatgaa agaagagtca
     5161 aaaaccgcaa aaaataccgc acaagcggtc attttttgtg tcttttttgc aagccttgag
     5221 tcgtgagatt tcaaggcttc attgttttgc aggcggcgtt tgcaaatttt ttactaaaaa
     5281 cgaccgcttg tattgcaata atcctttcat tacgccctca atttatcaaa atgtatatga
     5341 cagatgttca atatatggct tatgccatca cccttgccga aaaagcacgg ggttggacaa
     5401 gccctaatcc gctagttggc tgtgtgatcg tgaaaaacgg caacattatc gccgaagggt
     5461 atcaccaaaa agccggtagt tggcacgctg aacgcaatgc gattttaaac tgcgaggaag
     5521 atctgacggg ggcaaccgct tatgtaacct tagagccttg ttgccaccac gggcgaaccc
     5581 cgccttgttc cgaactgctg attgaacgtg ggatcaaaaa agtgtttatc ggctctcgag
     5641 atccgaaccc acttgtttct ggcaaaggag cggcacagct tagagccgcc ggcattgagg
     5701 ttgtggaaga ctttatgcga acggagtgcg atgcgctgaa cccgattttc ttccattaca
     5761 ttcaaaccaa acgcccttat gtgttgctga aatatgggat gacggcagat ggtaaaattg
     5821 cgacttatac ggggaattcg aaatggatca ccggcgaggc tgcccgagct aatgtacaga
     5881 aaagccgcca cgaatatagt gcgattatgg tcggggtgga aacggtgctt gccgatgacc
     5941 caatgctcaa cagccgaatg gaaaatgcta aacagccggt gcggattgta tgtgacagcc
     6001 aactgcgtac cccattggat agccaactag tccaaactgc acgccaatat cgcaccatta
     6061 ttgctacgct caataatgat gcaaaaaagc aggcagaata taccgcttgc ggtgttgaaa
     6121 ttttagtgac aggcgaacgt gacaagcggg tggatttagc cgatcttttg caaaagctgg
     6181 gcgaactcgg gatcgacagc ttattgattg aaggtggttc gcaactcaat ttcagcgtgc
     6241 tggaacaggg gttagtcaat cgagtacatt gctatattgc cccgaaactg attggcggca
     6301 aagcggcaaa aaccccgatt ggtggcaagg ggattggcga gttagcacaa gcggttaaat
     6361 tacgtctaaa atccaccgaa ttgctcggag aagatatttt gttggattat gaagtggact
     6421 tgcttcgtaa ttaaattgaa atttccttac tctcgcccgt ttacgggaga gagacagcat
     6481 aaaatttcgt tcagaaattt tatgcagaga gaggggaaaa tgagtgtaat cttccctctc
     6541 cctccgaaaa tcctacggat tttctcttcc ctctcccgta aacgggagag gggaatagta
     6601 agataagcag ttctcagact aaattggaag taaatcggag aaaaatttaa atgttcacag
     6661 gcattatcga agaagttggc cagatagccc aaattaagaa acaaggcgag tttgtggtgg
     6721 taacggttaa agcaaaaaag attctgaccg atgtacattt aggggatagc attgcggtaa
     6781 atggcgtgtg tttaaccgtg acttcattta cgcaggagca atttactgct gatgttatgt
     6841 cagaaacctt aaaacgtaca tcacttggcg aattaagtat caacagctcg gttaatcttg
     6901 agcgggcaat ggcggcaaac gggcgttttg gtgggcatat tgtgtcaggt catattgatg
     6961 gcacgggtgt ggttgcagag attacaccag cagataattc aacttggtat cgcattaaag
     7021 ccgaacctaa gttaatgcgt tacatcattg aaaaaggctc aattactatt gatggcatta
     7081 gtttaacggt ggtggatgtt gatgcggaat ctttccgggt atcgattatt ccgcatacca
     7141 ttaaggaaac cgacctcggt acgaaaaaaa tcggtagttt ggtgaattta gaaaatgaca
     7201 ttgtcggcaa atatatcgaa cagtttttat tgaaaaaaga gcctgaaaat ccgcaaagta
     7261 aaattactgc ggactttctt aaaaatgcag ggttttaacc aaataaagga caaataatgt
     7321 ttaagttttc aacggtagaa gaagcaattc aagcaattgc acaagggaaa attattttag
     7381 tcagcgatga tgccgaccgt gaaaatgaag gggacttcat ttgtgcagcg gaatttgcga
     7441 caccggaaaa tatcaacttt atggcgaaat atggtaaagg gttgatttgt acgccgattt
     7501 cgacagaaat tgccaaaaaa ttaaattttc acccgatggt gctagagaac gaagataatc
     7561 atcaaaccgc atttaccgtt tctgttgacc atattcaaac cggcaccggt atttccgctt
     7621 ttgagcgttc attaacttgc ctgaaaatgc ttgatgaaaa tgctaagccg gaagatttta
     7681 gacgtccggg gcatgttttc ccattagtgg caaaagacgg aggcgtatta gtgcgtaacg
     7741 gtcataccga agcaactgtg gatttagctc gtttggcggg cttgaaaccg gcagggcttt
     7801 gctgtgaaat tatggcagaa gacggcacga tgatgcagat gccggaatta caggcatttg
     7861 cacaagcaca caatatgccg tttattacta ttcagcagtt acaagagtat cgtagaaaac
     7921 acgacagctt ggtgaatgtg gtttcggtgg taaaaatgcc gaccaaatac ggtgagttca
     7981 aagcacacag tttcgttgaa actatttcag gcaaagaaca cgtcgcttta gttaaaggtg
     8041 atattggtga tggcgaaaat gtattatgcc gtatccattc cgaatgttta accggcgatg
     8101 cctttggctc acaacgttgc gattgtggtc agcagttcgc agcggcaatg aaccaagtgg
     8161 agcaagaggg cagaggcgtg gtgctttatt tacgccaaga aggacgtggc atcggtttaa
     8221 ttaataaact gcgtgcttac gaattgcaag atagaggaat ggacacggtt gaagccaacc
     8281 tggcattagg tttcaaagat gatgagcgtg aatattatat cgccgctcaa atgtttgaaa
     8341 aattaggcgt aaaatcgatt cgtttgttaa ccaataatcc ggcaaaaatt gaaggactca
     8401 ttgagcaagg tttaaacgta gtggctcgtg agccgattat ggttgagcca aacgaacacg
     8461 atttggaata ccttaaagtt aaacagcaca aaatgcgaca tatgtttaat ttctaatcca
     8521 atactctctc cccttgtggg agagagacag aaaaatactt cgttcagaag tatttttcag
     8581 agagagggta tattttttag aaaaagtttg caatttcccc tctccctgat ttttcttctg
     8641 aacgaagaaa aatctatccc tctcccacaa ggggagaggg ttattgagta tcaaatttat
     8701 tttaaagaag gaaaacaaac aatggcaaca tttcaaggaa actacatcgc aactggttta
     8761 aaattcggta ttgtggcaac taactggcac aagattttta tcgatcaact gttaaacggt
     8821 gcaaccgata aattattgcg tcacggcgta gaagaaaaaa atatcgacac cgtatgggtg
     8881 ccgggtgcat tagaaatctc aattgcagcg aaaaaaatgg cacaaagcgg tcgttatgat
     8941 gcgattatct gcttaggtgc ggtcgtgcgt ggagcaacca gccactatga tgtggtagtg
     9001 aacgagtcag caaaaggcat cagctcttct gctttagaaa ccggcgtgcc gattattaac
     9061 ggtattttaa cggtggaaaa tttagagcaa gcgattgagc gttcaggcac taaagccggt
     9121 aataaaggcg aagagtgtgc aatggtagcg attgaaatgg cgaacctatt aaaagcctta
     9181 gcgtaatcag cgataaaatc cccttagacc caagagccta aggggatttt tttattttct
     9241 gcgtagtaac aggctggcaa tgacacaaaa taggctgaaa ctgtaaatta accagtgacc
     9301 taattgttta aacggcgtat cgcctttggt tggcacaatg gtggcagtta gtgcatcagc
     9361 agtaaattgc ggtagttgtt caattacttt tccgttggca tcaacaatgg cggtaatacc
     9421 ggtattcgca gctcgaagca atggtttgcc aagttctaac gctcgcattc ttgccatttg
     9481 gaaatgttgc caaggcccga tggaagaacc aaaccacgca tcattggtga tagttaataa
     9541 ataatctgaa ttttggcttt tttggttttg ttgtaactga tcaccaaaaa taatttcata
     9601 gcaaatcgcc atattaaatc ggttgttttt cgccaagaat gatggttgaa cgaaactgcc
     9661 ttgtgaaaga ttaattggta gaataaacac ttcccgcatc caatccagca ccgagccaaa
     9721 cggcacatat tcgccaaacg gcacaaggtg atgtttgttg tagcgagggt tgctgtgcag
     9781 ggcatattcc ctctcttttt cgcctaatag cacgctactg ttaaacagtt cctcttgctc
     9841 attttgatag agtgtgccga taataatttc acttccgtgt tggcgagcta agtgatcgag
     9901 cgagccaagc agcgggctga tttgattttc aagtgccgga atggcggatt caggcaaaat
     9961 aatcagttca ctgttaccta ataggggcag aatgagctgt tcgtaggttc gtacgctgtg
    10021 gttgaaatgt tgcggatccc acttcatttt ttgctcaata ttcccttgta ctaaactcac
    10081 tacaagcggt tgtttttctg tatcaatttg cacaaattgg agaaagcgag tggcaaaact
    10141 taagccaaaa atgaccgcta gtaccatcaa tgatggcaca gttttgttct cttgctgaat
    10201 aattttcact agatagctac ttgcaactat taccaagaaa gtcaaacctt caacgcccaa
    10261 aatcggcgca ataccagcaa aggggctgtc tattaagcta tagccgaatt gtagccacgg
    10321 aaaaccggta aataccacgc ctcgtaaata ttcggtaaag gtaaaaatcg cagccaatgc
    10381 aaacggatta ttcagtttga gcctgtgtga aactacacta aacagcagat tataaatagc
    10441 gagatagcac gccaacagga atactgctat gtagcttact atggtaggaa caccaccaaa
    10501 ttgggtcata ctcacagaaa cccagtttac accggtgcag aagtagccga tagaccaagc
    10561 aaaggttgcc cataatgcgg tttttctgtt tgccagagtg gctgaccaaa ccaagccggc
    10621 tgcggaagca aaggcaagaa tccaaatatc aaaaggcgaa taggcgaaag tgccgattgc
    10681 acccagtatg attgcaagga gacaagcggt taaaaaaggc ggattttttg caaaattcat
    10741 aataactcac taaataaatg aggcacgccg aaacgtgcct tgattgaaac tcactatatt
    10801 attcttcttc gttaggagag gttttttcca ttttctctaa ctgttcatcg gaaagtgtga
    10861 ctcgtagctg aatcaattgg cggctattag ctgaggtgac tttaaaatca attccgttta
    10921 actcaatttg ctcatctcgt ttcgggaaat aaccgaaagc ctgcatcact aaaccaccaa
    10981 tggtatccac ctcttcgtca ttaaagtcgg tagcaaaaaa ttcattgaat tttttgatgt
    11041 cggtgagcgg taataccgca taagtatgtc ttgaaagctg gcgaattggt ttgacctctt
    11101 cttcatcaaa ctcatcttca atatcaccca caatttgttc aagaatgtct tcaatggtga
    11161 ctaagcctga aaccgcacca aattcatcaa ccactactgc catatggaag cgttctgaac
    11221 ggaactcttt tagcattcgg tctaggcgtt tgctttccgg tacaataacc gcagggcgta
    11281 atacctgttg cagattaaag ggttcagagt cagaacgtaa atatttcaat aaatctttag
    11341 agtgaagaat accttcgata gtatctttct caccccgaat caccggaaaa cgagagtgtg
    11401 cggattcaat aattaaatca atacagacat ctaaaggttc attggcatca ataaacacaa
    11461 tttgcgcacg gggaatcata atatcccgca ctcgtaattc cgagatttcc attactcctt
    11521 cgatcatctc tttggtgtcg ctgtcgatca attcattttc aacagagtct cgaatcactt
    11581 cgactagatc ttcacggttt ttaggctcgt tttgaaaaag cccgctaaat agagagtgta
    11641 aaatcgattt tttttctgat ttttcggtgg tgtttacact ttgctgttca tcactcatag
    11701 tttgttccac ttaaataaag tacgcttata ataagcaaat tcagtcacaa agcaaataaa
    11761 acattgctat tttcactcaa attagcatag gataagcaaa aatcttttta tttcttcata
    11821 ttttaggagt ttgaaatgaa attaaccaaa atagcattaa gtttaacagc cttagttgtc
    11881 agttcgatga gtgtggccgg gacgttaagt acatcatcaa tggtggacat tttagccttt
    11941 gacgggcaac gtgttaaatc cggcacgact tcggttcaaa tgagtgagaa taaaacgcat
    12001 caagtggtag tggaagtcgg tgggacagtt gaaggggatt ttttcacctc tgatcaaatc
    12061 attttgactt tccaaggcag tgcggaaaat gcaaaattag aaacgccaag attaaattca
    12121 aagttagatc ttcgtaaatt ccaagagaat cagactgtgg caattaaaac cgattcaggt
    12181 aaggttattt cacataaaca agatttctta aaaggggaag gtttccttgc gaaaacaaga
    12241 gttgaagata atttaacgaa atataactta gcgaaaaaaa cagcttcagt tgaacagttt
    12301 gcgacggcac ctcttgaagc aaaaggacaa attgtggtgg atacaaataa agtttcacaa
    12361 gaagaattac agcttttatt tagaaaggca gataaagaca cccaaaaacg tttcttagaa
    12421 tgggcgaaga aaaatataaa ataaacctat atcaattaat aagcggtcat ttctcgccaa
    12481 ttttttgcaa ggtgttaaaa aaatgaccgc tcatacaatg agatttacca gcaataatag
    12541 cagtaacgcc agcctctata catatagtct ctatcgtaat tccaacgaat ttcttcaagt
    12601 tctacttgtg ccttgtaatt ttgccaagca agcttataac aggcttggaa cattggggca
    12661 ttgacttttt cggcatagcg tttcttaaat gctttctctt cttgttcggt ttggctaagc
    12721 ggcggattaa attgttggta cattaactcc gccgtttcta catcacattg tttggcgagc
    12781 tgaacttgca aatcttgttc tgcccgaatt tgcttcgctt tacgttcagc ttgttgctct
    12841 ggagttaaag tacagctact taacataagt gcgagtgaaa aaatgcagcc taatttgagt
    12901 gttttcattg ctgaatcctc tagttgaaat tggtgattta ttctaccgct tctaactcac
    12961 tttcttcaag ttcatcagcc atagcactaa gggcatcacg gctaagttgt gcgagggctt
    13021 tataaaaacc attgtcgaaa gcttctattt ttcctaagaa tttgcctgca caaggtagta
    13081 aaaattgttc gaataatatt ttttgagcta aggcagaatc gagattatct tcgatccaag
    13141 atgccgtgag aaatagtaac ccaatgtgat cggcattttc taattcaggc attgcccgct
    13201 cttgtctaaa agctacaaaa ttattaactg ataatccata ggctgaaatt gttggagaaa
    13261 tagccccatt ttcagcaaaa agcgcttgat agcttgctgc taattgcgta gggttagcat
    13321 tcttttgtaa gagagtcagc gcattttcac tttggctatc cgtatttaat gcccagactt
    13381 ggcgtaatcc tccttgggca agccagttaa atgtgccagc taaaataggg tcggtagggt
    13441 gacgataaaa taagttgcca aacaaacggc aaagcaggga aaaatcgtta atggtagttt
    13501 cgttcataat ttgaaataga tagaaaaaag aattgttagt atagcagaac acaagagagg
    13561 actgaatgaa atatataggc gcacacgtta gtgcttcagg tggggtggaa aatgcagttt
    13621 tgcgttccgt agaaattggt gctaatgcat ttgcgttatt tactaagaat caacgtcaat
    13681 ggcaggcacc ggcattaaaa gccgaaacta tcgaaaaatt taagcgtttt tgtaaagtgc
    13741 atcatttttc agcagagcaa atcttaccac acgatagcta tttgattaat ttaggaaatc
    13801 cggaagcgga ggcattggag aaatctcgtg tagcatttat tgatgagatg tctcgagcaa
    13861 atcaattagg tttaaaattg ttgaattttc acccgggggc gcatttaaag caaatttccg
    13921 agcaagattg tttggctaga attgcagaat cgatcaatat tgcagttgaa aaagtaccga
    13981 atgttattgc cgtgattgaa aatacggcag gacagggttc taatttaggt tggcatttcg
    14041 atcatttggc aactattatt gagcaagttg aggataaaag ccgagtgggg gtgtgtttag
    14101 atacttgtca cttattttct gccggctatg atattagttc ttatgaaaag agcgaggcag
    14161 tatttaatga ttttaaccaa acggttggtt ttcattattt aaggggaatg cacttaaatg
    14221 gttcaaaaac accattaggc agcagagtgg atcgtcatca taccttaaga gaaggcacaa
    14281 taggaaccga agtgtttgca tttattatgc aaaatatgca ttttaaccat attcctatga
    14341 ttttagagac aatttcgcct gaaatttggg cagatgaaat aaaatttcta cgcacattgg
    14401 aactaaaata ggttatactg gtctgagtag tgggtctagc agagtctaga ccttattttg
    14461 ttatcttttt taatctttta gaagatttag ttaaggaatt taccgctgta attgttctgg
    14521 cgagacgaga cataaattat gaaaaaaaat ctttttgcaa caaccttcaa gcccgtattt
    14581 attgcttcta ttttgtctgt ttttggaggg tattcttcca ttgctgtagc aagtttaagt
    14641 tctaaaccgg ccacaccaaa tcaaatcatt gcaagtaaag cagaaagatt agctaagtct
    14701 tcttcagtat ttaccaatcg agcaaatctt ccaacttctt ccgctcatac agcgaattat
    14761 agtggtcgta ttaatagtgt ttatcataat tgggtaggga cacgctatcg tttaggcggc
    14821 acaacaaaag caggaattga ttgttccgcc tttgtgcgtg aagtaatggg caaagcattt
    14881 agtaaagata tgcctcgttc aactgcagaa caacgccatg tcgggcattc catttcaaaa
    14941 tctgatttac gcccaggtga tttagtcttt ttccgtaaga ataaccatgt aggggtttat
    15001 attggtaatg gtaaatttgt acacgctagt tcaagtagag gggtaaccac cagctcattg
    15061 tcagaaagct actggtcaag aaactacaca caatctcgcc gtgtaattta ataaattaca
    15121 attccaagat gaaaagaaca ctcacttttg cgagtgttct tttttaatta aaaaagttta
    15181 tgctacgcgt tgcttagctt gtgtaaatgc tccacgagta cgcatttgat gaaccacatt
    15241 agtaattaca cctgctattt ttacttcagc ccaatcagta attctaagat ttgattcgct
    15301 cacatctaat gaaaataaaa ttttttcagc aataccttcc ccattctgaa tttcattaaa
    15361 gaattgatag aatttatatt ccccatcttt ttcaagcacc aatagatcat taactaaata
    15421 ttggttggtc tgttctacaa tcaataaatc gtctagttca attccccacg cgattaaatt
    15481 tgggtttttc acgtggataa aaaaagtgtc tcttgggcgt ttgatacaaa gtgagttaag
    15541 atcgagcttt acagagcggc tgctattgaa atcccgataa agcggaatcg gctgataagc
    15601 tgccgtttga tctgaaattt gtctaattga agccatagta aaatcctcta tctgtttttt
    15661 tatacagggt attttactgg ctaaaatacc agtgtcaacc attattttgg aattttttgt
    15721 aaatttaacc agtgttttga ccgcttgtta tcctttaaaa agcaataaaa aagcacccat
    15781 agggtgcttc ttatgcttaa aagctgttat tataggcttt cagtgaatgt acgagtaata
    15841 acatcgcgtt gttgctcagg ggttaatgag ttgaaacgaa ctgcataacc tgaaacacgg
    15901 atcgttaatt gaggatattt ctcagggttt tgaatcgcat cttctaatgt ttcacggcgt
    15961 aaaacgttta cgtttaagtg ctgaccacct tcaactttaa tcgttggtgc aacattaacg
    16021 ggtacttcac ggtatgcgat atcacctaat tcgctgatag caacaacttg atcttcttca
    16081 aatcctgctt ttgcagctaa acaacgagct tcatttttag cttcgtctaa taaccagaaa
    16141 gagtttaata agttgctgtt tgatgattct gtgatttgta cacctttaat ca
//
LOCUS       DANLVT010000049        16184 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.049, whole genome shotgun sequence.
ACCESSION   DANLVT010000049 DANLVT010000000
VERSION     DANLVT010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16184)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16184)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16184
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.049"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..279
                     /locus_tag="PXC99_001338"
     CDS             <1..279
                     /locus_tag="PXC99_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417793.1"
                     /translation="PNLDEWYSASDKERREFIAKHFAEETVRSDRNTPYDYAMCTGRM
                     FAKQLTRDEVKDYPLANTKPQYLTRDRRIEIMSNLPREILQNCAKYIQ"
     gene            complement(315..1067)
                     /locus_tag="PXC99_001339"
     CDS             complement(315..1067)
                     /locus_tag="PXC99_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HDL5417794.1"
                     /translation="MAYKPPFTVTTKMLNLVVEISHKLGTLQLDFERNLHLRKNNRLR
                     SIQASLAIEANSLTIEQVTAIIKGKKVLGHPKDIREVKNAYDAYDEMMHYNPYSIKDF
                     LKAHKFLTADLVNDAGAFRSKDVGIYNFSGQLVHMGARPQFVENLINELFSWAKQDDT
                     PALIKSSVMHYEIEMIHPFSDGNGRMGRLWQNVLLAQWNPLFAWLPIETMVYENQQRY
                     YQMLSLADSQNDSTGFIEFMLEMILETLLKLK"
     gene            complement(1106..2353)
                     /gene="clpX"
                     /locus_tag="PXC99_001340"
     CDS             complement(1106..2353)
                     /gene="clpX"
                     /locus_tag="PXC99_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATP-binding subunit ClpX"
                     /protein_id="HDL5417795.1"
                     /translation="MAFEKEPHCSFCGKKRTEVDQLVEGTEGYICNECIEESYALLHG
                     EEEPLIDENQDDEGSFFTNVPTPHELHAHLDDYVIGQEHAKKVLSVAVYNHYKRLRSA
                     LSNHQATNGVELGKSNILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGE
                     DVENVIQKLLMKCDFEAEQAERGIVFIDEIDKITRKSESASITRDVSGEGVQQALLKL
                     LEGTVANINPQGGRKHPKGETIPVDTSKILFICGGAFAGLDKIVEARTNTQGGIGFAA
                     ALKKDKDRQDLTELFKQVEPEDLVKFGLIPELIGRLPVVTPLQELDEEALIQILTEPK
                     NAIIKQYQALFEMEGVELHFTKDALISIAQKAISRKTGARGLRSIVENLLLDTMYDLP
                     TLNAKKVTIGKGCVENGDKPKVE"
     gene            complement(2353..2946)
                     /gene="clpP"
                     /locus_tag="PXC99_001341"
     CDS             complement(2353..2946)
                     /gene="clpP"
                     /locus_tag="PXC99_001341"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HDL5417796.1"
                     /translation="MALVPMVVEQTSKGERSYDIYSRLLKERIIFLNGQVEDNMANLI
                     VAQLLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQAASMGAF
                     LLSAGAKGKRFALPHARIMIHQPLGGARGQATDIQIQAEEILRLKATLTRRMAEHSGQ
                     SYEKVLADTERDNFMSAEEAAEYGLIDKVLTSRSEVA"
     gene            3058..3441
                     /locus_tag="PXC99_001342"
     CDS             3058..3441
                     /locus_tag="PXC99_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufE family protein"
                     /protein_id="HDL5417797.1"
                     /translation="MTLTEIYQKFERCKSWEERYRLLIQLSRLLPKPSEQELAQIAEI
                     EGCESRLWFEFQAEPRKVVAYSDARLMQGILFIVSVALTEKTAEELKGFDLKTMFDEL
                     KISQNLTSTRLNGLGQLQKHIMMNL"
     gene            complement(3545..3621)
                     /locus_tag="PXC99_001343"
     tRNA            complement(3545..3621)
                     /locus_tag="PXC99_001343"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3585..3587),aa:Asp,seq:gtc)
     gene            complement(3710..4465)
                     /locus_tag="PXC99_001344"
     CDS             complement(3710..4465)
                     /locus_tag="PXC99_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5417798.1"
                     /translation="MKKSIYDTPIFFERYQQLRQNPISMNEVVEKPTMFSLLPDLTGK
                     KVLDLGCGTGVHLAHYLTLGAEKVVGLDLSELMLQQAESDLSAHWQKGNDFSLYCLPM
                     ERLNEISEGDFDVVTSSFAFHYIADFSELLAKISQKMTACGTLIFSQEHPIVTCYREG
                     YRWEKNQEKQQVAYRLNYYREEGERDRSWFQQPFKTYHRTMATIVNNLIQGGFEIVQM
                     EEPMLAGQPRWHNEFKDLQHRPPLLFIKAIKQK"
     gene            complement(4525..5520)
                     /gene="trpD"
                     /locus_tag="PXC99_001345"
     CDS             complement(4525..5520)
                     /gene="trpD"
                     /locus_tag="PXC99_001345"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HDL5417799.1"
                     /translation="MQALLDKLFANQALAQAESHRFFSEVIKGNVSNEQLAAALIALK
                     LRGETVDEIAGAAKAALENANPFSTPDYPFADIVGTGGDGHNTINISTTSAIVAATMG
                     YKIAKHGNRSVSSKTGSSDVLSHLGINVDVSPETARLALDETNICFLFAPTYHSGFKY
                     AAPVRQALKTRTIFNILGPLVNPAHAKRQLLGVYSPELVKVYAETVKALGYEHTIVVY
                     GAGLDEVAVHGETQVAEIQNGQIDYYTLTPEDFGIERHSLEDLKGGEPAENAEKVTAI
                     LQGKGKLAHIDAVAANVALLMKTFGEDDLKANVQKVKETLESGKALETLRKLSTY"
     gene            complement(5538..5924)
                     /locus_tag="PXC99_001346"
     CDS             complement(5538..5924)
                     /locus_tag="PXC99_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005543439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tautomerase family protein"
                     /protein_id="HDL5417800.1"
                     /translation="MISVYGLKQTLADRRALIADVIFDCMQMSLGVPKQRHALRFDLL
                     DAENFYPPINRSQDFIVIEINLMQGRSEQLKKRLIKGLFSALHTKVGIVPMDVEITIK
                     EQPEHCWGFRGMTGNEATDLEYQAHR"
     gene            complement(5917..6507)
                     /locus_tag="PXC99_001347"
     CDS             complement(5917..6507)
                     /locus_tag="PXC99_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HDL5417801.1"
                     /translation="MANILFIDNFDSFTYNLVDQFRELGHQVTIFRNDYPLEDFLAKA
                     ETTENCLVALSPGPGNPAEAGNLLEIIRRLKDKVPMIGICLGHQALIEAFGGKVVHTG
                     TVLHGKVSRIEHDNQAMFSGINNPMLVARYHSLMGDELPAEFIVNAKFEHIVMAIRHK
                     TLPICGFQFHPESILTVQGTKLLKQSVEWLLGEKND"
     gene            complement(6517..8073)
                     /gene="trpE"
                     /locus_tag="PXC99_001348"
     CDS             complement(6517..8073)
                     /gene="trpE"
                     /locus_tag="PXC99_001348"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HDL5417802.1"
                     /translation="MPQLTITQTELPYFADTTRVYYALCGERPHTLLLDSAEIQSKNS
                     VKSLLFAKSAVHIFCEDQTVTFHALTPNGEAVLPLIANALSLLNPAPTCKFLDKNDRL
                     QAIFPTISNQLDEDSKLKTTTVFDGLRTVSQLFADSTSPIYLGGLFSYDLVANFIPME
                     NISLQDDGLSCPDYTFYLAEQLVTIDHQTETAVLNTFCFEPNEQTNLNQQAVEFTQKL
                     ANLSHIELPLANQTATSEATANIEDEDFKAIIRKLKHHINIGDVFQIVPSRRFSLPCP
                     NTLASYKQLKINNPSPYMFYMQGENFTLFGASPESALKYSQANRQLEIYPIAGSRPRG
                     FDEQGNIDPELDSRLELELRLDQKELAEHLMLVDLARNDVARVSESGTRRVVDLMQID
                     RYSQIMHLVSRVIGTLRKDLDALHAYQACMNMGTLTGAPKIKAMQLIYQVEQQKRHSY
                     GGAVGYLTSDGNLDTCIVIRSAFVQNGIAYVQAGCGEVLDSDPQLEADETRHKARAVL
                     KAIGQVNAKA"
     gene            8215..8832
                     /locus_tag="PXC99_001349"
     CDS             8215..8832
                     /locus_tag="PXC99_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HDL5417803.1"
                     /translation="MTQFFYIHPDNPQQRLINQAVEIIRNGGVIVYPTDSGYALGCAM
                     GDKHAMDRIVAIRKLPENHNFTLVCSDLSELSIYALVNNQAYRLIKNNTPNPYTFILP
                     ATKELPRRLMTKRKTVGIRVPDNAIALALISALGEPILSCSLMLPETEMTESDPDEIR
                     DHLQNRVDLIIHGGYLGQQPTTVVDLTDDVPVIIREGSGDPTSFN"
     gene            8978..10045
                     /gene="rluB"
                     /locus_tag="PXC99_001350"
     CDS             8978..10045
                     /gene="rluB"
                     /locus_tag="PXC99_001350"
                     /EC_number="5.4.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2605) synthase RluB"
                     /protein_id="HDL5417804.1"
                     /translation="MTTFQKKSTATFRADKRGESRPSFKKEEQKSERKFGKTSEKPPR
                     PTSKPLTQRIAKKVEKTTASEVASQEKKAKVVGEKLQKILARAGQGSRRELEEIIAAG
                     RVSVDGKMATLGDRVQVSSSTKIRIDGHLVNLMPAQKEICRVLMYYKPEGELCTRSDP
                     EGRSTVFDRLPRLSGARWIAVGRLDINTSGLLLFTTDGELANRLMHPSREVEREYSVR
                     VFGNIDDAMLQRLRKGVQLEDGPANFKQIKVVGGTGLNQWFDVTLTEGRNREVRRLWE
                     SQGVEVSRLIRIRYGNIKLDKGLPRGGWEEMGLEQVNYLRELVGLPPETETKVEVGVN
                     RRRTNIRQIRKAVKQHQKYRG"
     gene            10111..11883
                     /locus_tag="PXC99_001351"
     CDS             10111..11883
                     /locus_tag="PXC99_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDL5417805.1"
                     /translation="MSWDIVATLAVTGIAVFLFATEKMRMDVVAILVLCSLVLLGQVD
                     TKSALSGFSNSATVTVTAMFVLAAGLQNSGALDSVGSLLAKVKSPWLFLLVLCGVNAA
                     VSPFVNNTAVVAVLIPIVIAAAQNIKMAPSKALIPLSFSSQMAGVCTLIGTSTNLLVN
                     AIAQKQGHSGFGMFEFAPLGIIFLVVGVAYLLVTSRFLLPESHLQLEDGEGFGKYVSE
                     LKVNKDSVLIGKSTFESGLNEEFNLFTIGVLRDGERLSTPSHQVLQKHDILLLRGESE
                     NLAKVREKYGLHHVVYGRRENDEDNLDEDLMVAEVMISPISRWIGGTIPILQQRWNKN
                     ATVLGIQRQSKVIRERLRTTAFKMGDILLLTLPKEDMETLRQDKDFIVLSSDLVKTEE
                     SWKSKFALGVMVLVVATAALGWVPISVSALIGAVAMCVAGCLTAEEAYQSIDWKIILV
                     LAGLLPLGEAMANSGAAQFIVDNTLGKVGEFGPLVVLAVLYLLTMVLTEFMSNAGTAV
                     LLTPIAVSTAKMLGVDASPFIIAVMFAAATSFMTPVGYQTNTMVYGAGGYKFTDFIKI
                     GLPLNVIYWILGIVLIPIFFPFNP"
     gene            complement(11973..16124)
                     /locus_tag="PXC99_001352"
     CDS             complement(11973..16124)
                     /locus_tag="PXC99_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL5417806.1"
                     /translation="MNKIYRIVWNHAKRTWIVASELSRSANKSNATNTSLTTNIIKLS
                     TLSLALSAGFASAATYSPTYGTIPDNNPQTSIAIGDGSKVNSTLVSTITGLEGNSGKV
                     STALGYNTTATADFSTALGGFANASFASTAVGGQATADKRSVAVGYNATAMGLREVFI
                     GDHAGLNHSNSTEYNIGIGYSASSNVTGNNTISIGNTAGDGTSGSHNIAIGTYANAKL
                     AGPTTNVTSDDNIAIGNSALANGVNNYKTTAATGETVIGKATAVGSHANATGIVSSAY
                     GAEANATAIHSTAIGAKSQANGDNSTAIGYEAKTSGHGATSLGYYANATANLTTAVGT
                     NAGATSDYASAFGREANASGGSATALGNRATASGAASVALGVSAKATNQRTIAIGESS
                     NASAFNATAIGRNATAEHTDSIALGSNSVTAIAIPTTNATVNGITYSDFAGTNPIATV
                     SIGAEGKERTITNVAAGRISLSSTDTINGSQLYLTQQAIGNVAATTANILGGGAAVTE
                     NGNITFPTYALVNGTPDADKEGKQGRYTTVSAALSALNTAVISPLTFAGDTGTNFERH
                     LGSTVKIKGGSTGILTENNIGVVADGNSTLTIKLAEKVNLGANGSLTTGDTVVNNTGI
                     TIANGVADKPVSLTKSGLDNGGNKIANVAAGDVDTDAVNVSQLKQAISKFATHYVSIS
                     DDGIQRANYDNSGSSGVNPMAIGVATSANGELATALGSEAEANGERTTAVGPRATADG
                     MNATSIGYNANANATNALAVGSAANANADTSTAIGTASTATATRATALGSKSEATGEN
                     STAVGYEASSIGADSLAAGYNANASGTQSTALGNSANAGGIWSTSVGRNANAAGSSAI
                     ALGNSANAAGVASIALGVSSQATTTAAVALGQNAKATHQGSVALGTNSETVATVATKS
                     ATLNGNTYTFAGTTPSSTVSIGSVGNERTLTNVAAGRILDSSTDAINGSQLYAAYTEI
                     DGLNTKVNELSNGALTFVDDAGTEIVRKLGTSLNVKGGADATILTDNNIGVVATDANT
                     LTVKLAKDIDLTPAGSVAVGNSKLNNNGLTINNGPSVTMTGVDAGKLKITNVADGDIS
                     PISADAVNGSQLYDTANTIATALGGNSSVNANGAVSAPSYTVVDGAPTNEVSKTVNNV
                     GSAITALNDAVTSPLTFAGDTGTPSQRKLGSTVTVKGGVSNESQLTDNNIGVISNGNG
                     SLTVKLAKDIKVNSVTAQTVTANIAVADTVKTGDTTIDTNGLTIVGGPSITKTGINAA
                     GTKVTNVKAGTEDTDAVNFSQLKATEKNINNKINNIDSKVNKVDKRLRAGIAGATATA
                     GLPQAYLPGKSMLATAGDTYRNEAAIAVGYSRISDNGKVIYKLTGNSNTRGDFGGSIG
                     MGYQW"
BASE COUNT         4452 a         3298 c         3464 g         4970 t
ORIGIN      
        1 cctaatttag atgagtggta ctcagcttca gataaagagc gaagagaatt tatcgcaaaa
       61 cattttgcag aagaaacagt aagaagtgat agaaatacac cgtatgatta tgctatgtgc
      121 actggtagaa tgtttgctaa acaactgact cgagatgaag tcaaagacta ccctttggca
      181 aacactaagc cgcaatattt aacccgtgat agacggattg agattatgtc taatttacct
      241 cgtgaaatat tacaaaattg tgctaaatac atacagtaat tttatgagta acaccacttt
      301 ggaattaagt ggtgttattt taattttaat aatgtctcta aaatcatctc caacataaac
      361 tcaataaagc cggtagaatc attttggctg tctgcgagag aaagcatttg ataataacgt
      421 tgttgatttt cgtaaaccat tgtttcaatc ggcaaccaag cgaaaagtgg gttccattgt
      481 gctaaaagga cattttgcca taatcgaccc attctgccgt ttccatcact aaaggggtga
      541 atcatttcta tttcatagtg cataaccgag cttttaatga gtgcaggtgt atcatcttgt
      601 ttagcccaag agaacaactc attaatcaaa ttctctacga attgaggacg agcccccata
      661 tgcacaagtt gcccactgaa attataaatg ccgacatctt ttgaacgaaa agcccctgcg
      721 tcatttacta agtcagcagt aagaaactta tgtgctttga gaaaatcttt aatcgagtaa
      781 ggattatagt gcatcatttc atcgtaagcg tcataggcat ttttgacttc acgaatatct
      841 ttggggtgtc cgagaacctt tttgccctta atgattgcgg taacttgctc aatcgttaat
      901 gaatttgcct caatagctaa agaggcttga attgatctca agcggttatt ttttctaaga
      961 tgtaaattac gctcaaaatc caattgtagc gttcccaatt tatgagaaat ttctacaacc
     1021 agattcagca ttttagtggt aactgtaaaa ggtggtttat aagccatttt gcaataatcc
     1081 taaaaaatta aaccgcttgt cattgttact ccaccttcgg cttatcgccg ttttcaacac
     1141 agcctttgcc gatggtgact tttttcgcat tgagggttgg gagatcgtac attgtgtcaa
     1201 gtaataagtt ctcgacaata gaacgtaacc cacgagcccc ggttttgcgg ctaatcgctt
     1261 tttgggcaat tgaaattaat gcatctttgg tgaagtgcaa ttcaacgcct tccatttcga
     1321 ataaggcttg atattgcttg atgatcgcat ttttcggctc ggttaagatt tgaatcagag
     1381 cttcttcgtc caattcttgc agcggagtca ccaccggtaa acgcccgatt aattcaggaa
     1441 ttaagccgaa tttgactaaa tcttccggtt caacttgttt gaatagctcg gttaaatctt
     1501 ggcgatcttt atcttttttc aatgccgctg caaaaccgat accaccttga gtgttggtac
     1561 gggcttccac gattttatct aaaccggcaa aagcaccgcc gcaaataaag agaattttgg
     1621 aggtgtccac cggaatggtt tcgcctttcg ggtgtttgcg accgccttgt gggttaatgt
     1681 tcgccaccgt gccttcaagt agttttaata aggcttgttg aacaccttcg cccgatacat
     1741 cacgggtaat ggatgcactt tccgatttac gggtgatttt gtcgatttca tcaataaaaa
     1801 caatgcctcg ttccgcttgt tcggcttcaa aatcgcattt cattaataat ttttgaatca
     1861 cgttttcgac atcttctccc acatagcctg cttgggtaag ggtagtagca tcagctaccg
     1921 caaaaggtac gtttaaacgg cgggcaaggg tttctgccaa caaggtttta ccgctaccgg
     1981 tcggcccgat taataaaata ttacttttac ctaactctac gccattagtg gcttgatggt
     2041 ttgacaatgc acttcttaag cgtttgtagt ggttataaac ggccaccgaa agcacttttt
     2101 tcgcgtgttc ttgaccgatg acataatcat ctaaatgagc gtgtaattcg tgaggtgtcg
     2161 gcacattggt gaaaaaactg ccttcatcgt cttggttttc atcaattaac ggctcttctt
     2221 caccgtgtaa taaggcgtag gattcctcga tacattcatt acaaatatag ccttccgtgc
     2281 cttcgactaa ttgatcgact tcggtacgtt ttttaccgca aaaactacag tggggttctt
     2341 tttcaaatgc cattacgcca cctcactgcg agaagttaat actttgtcga ttaagccata
     2401 ctcagcggct tcttccgcag acataaaatt atcacgctcg gtatcggcta acactttttc
     2461 atagctctga ccgctgtgtt ctgccatacg gcgggtaagg gtagctttca agcgtaaaat
     2521 ttcttccgct tgaatttgaa tatcggttgc ttgacctctc gctccaccta aaggttggtg
     2581 aatcataata cgagcgtgcg gcagagcaaa gcgtttacct tttgccccgg ctgaaagcaa
     2641 aaatgccccc attgaagccg cttgccctgt gcaaagggtt gctacatcgg gtttgatgaa
     2701 gttcattgta tcgtaaattg ccaagcctgc tgttaccacg ccacccggtg agttaatgta
     2761 taaatagatg tctttttccg gatcttcggc ttctaaaaac agaagttgtg ccacaatcag
     2821 gtttgccata ttgtcttcca cctgaccgtt taaaaaaata atacgttctt ttaataaacg
     2881 tgaataaatg tcgtaagaac gttcgccttt tgaggtctgt tccaccacca ttgggactaa
     2941 tgccattttg ttttcctctg tcgtaataca aaatctcgct attctagcaa attttcagaa
     3001 aatcattaac aacaagcggt cagattgtta aaatcttttg caaatgatga ggaaattatg
     3061 acattaacag aaatttacca aaaatttgaa cgttgtaaat cgtgggaaga aagataccgc
     3121 ttgttaattc agctaagtcg cttgttacca aaaccaagtg agcaagagtt ggcacaaata
     3181 gcggaaattg agggctgtga aagccgttta tggtttgaat ttcaagctga gccacgaaaa
     3241 gtagtggcat atagcgatgc ccgtttaatg caggggattt tatttattgt gagtgtagct
     3301 ttaactgaaa aaacggcaga agagctgaaa ggctttgact taaaaacgat gtttgatgag
     3361 ctaaaaattt cacaaaattt aaccagcaca aggttaaatg ggttgggtca gttacagaaa
     3421 catataatga tgaatttgta attcaccctc gccccttgtg ggagagggtg aataaaatcc
     3481 gcaggatttt attcgggaga ggggaatata aaaaacctct gatttctcag aggcttaaat
     3541 ttgttggcgg aacggacggg actcgaaccc gcgaccccct gcgtgacagg caggtattct
     3601 aaccagctga actaccgctc catactggtg ctaaaataat agtggtttcc tcaacattga
     3661 gcaaatagtt tttgcaaaat agtgtttaat tggttgtaaa ataaccactt tatttctgct
     3721 tgatcgcctt gataaacagc aacggcggac ggtgctgtaa atctttaaat tcattgtgcc
     3781 accgaggttg gcctgccagc attggttctt ccatttgcac aatctcaaac ccgccttgaa
     3841 taaggttatt cacaatggtt gccattgtgc ggtggtaggt tttaaagggt tgttgaaacc
     3901 aacttctgtc ccgttcgccc tcttcccgat aatagttcaa gcggtaagca acttgttgtt
     3961 tttcttggtt tttctcccaa cgatagcctt ctcggtaaca ggtgacaatc gggtgttctt
     4021 gcgagaaaat cagcgtgcca caagcagtca ttttttgcga aatttttgca agtagttcgg
     4081 aaaaatcagc aatataatga aacgcaaaag agctggttac tacatcgaaa tcgccctcgc
     4141 tgatctcatt taatcgctcc atcggcaggc agtaaaggga aaaatcgttg cctttttgcc
     4201 aatgagcaga aagatcgctt tctgcctgtt gtagcattaa ttcagataaa tccaacccca
     4261 ccactttttc tgcaccgagc gttaaataat gggctaaatg aactcctgtg ccacaaccta
     4321 aatccagcac ttttttgccg gttaagtctg gcagtagaga gaacattgtt ggcttttcca
     4381 ccacttcatt catacttatt ggattttgtc gaagttgttg gtaacgctca aagaaaatcg
     4441 gagtgtcgta aatgcttttt ttcacttaat agcctttaaa caaatataaa ataaggcggg
     4501 ttaaaacccg ccactacgat atgattagta agtcgataat tttcgcaaag tttctaacgc
     4561 ttttccactc tcaagcgttt cttttacttt ttgcacattg gcttttaaat catcttctcc
     4621 aaaggttttc attaataatg cgacatttgc tgccaccgca tcaatatgag ccagtttacc
     4681 ttttccttgt aaaatagcgg ttactttttc ggcattttct gcaggttcac cgcctttgag
     4741 atcttctaac gaatggcgtt caatgccgaa atcttccggc gttaaggtgt aatagtcgat
     4801 ctgtccgttt tgaatttccg caacctgcgt ttcgccgtga acggcaactt catctaaacc
     4861 tgcaccgtat accacaatag tgtgttcgta acctaaggct tttacggttt cagcatagac
     4921 tttcactaac tcaggggagt acacaccgag taattggcgt ttagcgtgag ccgggtttac
     4981 caacggccct aaaatattga aaatcgtgcg ggtttttaag gcttggcgaa caggggcggc
     5041 atatttgaat ccgctgtggt aggttggggc aaacaaaaag cagatgttgg tttcatctaa
     5101 agcaaggcgt gccgtttcag gtgaaacgtc aacattaata cctaaatggc ttaatacatc
     5161 gcttgagccg gttttacttg atacgctacg gttgccgtgt ttggcaattt tatagcccat
     5221 tgtggcggca acaatcgcac ttgtggtaga aatgttgatg gtattatgcc catcgccacc
     5281 tgtgccgaca atatccgcaa aagggtaatc aggcgttgag aacggattgg cattttcaag
     5341 tgcggctttt gcagcacctg caatttcatc aacggtttcg ccacgcagtt ttagagcgat
     5401 taaggcagca gcaagttgtt catttgatac attgccttta ataacttcac taaaaaaacg
     5461 gtgagattcc gcttgggcta aggcttggtt ggcgaataat ttatctaaaa gtgcttgcat
     5521 agtctcttcc tttttaatta gcgatgtgcc tgatattcca aatcggttgc ctcgttgccg
     5581 gtcattccac gaaagcccca gcaatgctct ggctgttctt taatggtgat ttcaacgtcc
     5641 attggcacaa tgccgacttt ggtgtgtaag gcactaaata gtcctttaat taagcgtttt
     5701 ttgagctgtt cgctccgccc ttgcatcagg tttatttcaa tcacaataaa atcttggcta
     5761 cggttaattg ggggatagaa attttccgca tccaataagt caaaacgcaa agcgtggcgt
     5821 tgttttggta cgccaaggct catttgcata cagtcaaaaa tcacgtctgc aatcagggct
     5881 ctgcggtctg ctaaggtttg ttttaatcca tatacactaa tcattttttt ctcctaataa
     5941 ccattccacc gactgcttaa gtaattttgt gccttgcacg gttaaaatgg attccgggtg
     6001 gaactggaaa ccgcaaatcg gtaaggtttt gtggcgaatt gccatcacaa tatgttcaaa
     6061 tttcgcatta acgataaatt ctgccggtaa ttcatcgccc attaatgagt gataacgagc
     6121 gacaagcatt ggattgttaa tgcctgaaaa catcgcttgg ttatcgtgtt caatacgaga
     6181 aactttgccg tgcaatactg tgccggtatg cactactttg ccgccaaagg cctcaattag
     6241 agcttgatgt cctaaacaaa tgccaatcat cggtactttg tctttcagac ggcgaataat
     6301 ttccaataaa ttgcctgcct cagccggatt acccgggccg ggggaaaggg caaccaaaca
     6361 attttcggtg gtttcagctt tggctaaaaa atcctcaagc ggataatcat tgcggaaaat
     6421 cgttacctga tgccctaatt cacgaaattg atcgaccaag ttataggtaa aagagtcgaa
     6481 attatcaata aaaagaatat ttgccatagt ttgtccttat gcttttgcat tcacctgccc
     6541 aatcgctttt aacaccgcgc gtgctttatg gcgtgtttca tctgcctcta attgtggatc
     6601 ggaatccagc acctcaccac aaccagcttg cacataggca atgccatttt gaacaaaggc
     6661 ggaacggatc acgatacagg tatctaaatt gccgtctgag gttaaatagc ccaccgcacc
     6721 gccgtagcta tggcgttttt gttgctcgac ttggtagatc agttgcattg ccttaatttt
     6781 cggagcacca gttagcgttc ccatattcat acaagcttga taagcgtgca gagcgtcaag
     6841 atcttttcta agtgtgccga tcacacgaga aactaagtgc ataatttgcg aatagcggtc
     6901 aatttgcatt aaatcaacca cacggcgagt gccggattcg ctcacacgag ccacatcatt
     6961 gcgggcaaga tcgactaaca ttaaatgttc ggcaagctct ttttggtcta aacgcagttc
     7021 taattccaaa cgggaatcta attcaggatc gatattacct tgttcatcaa aaccgcgtgg
     7081 gcgagagccg gcaatcgggt aaatttccaa ctggcggttg gcttgcgaat atttcaacgc
     7141 actttcaggc gacgccccaa acagagtgaa attttcgccc tgcatataga acatatacgg
     7201 gcttggattg ttgattttga gctgtttata gctggcaaga gtattcgggc aaggcaagct
     7261 gaaacggcga gagggcacaa tttggaacac atcaccgata ttaatatggt gtttgagttt
     7321 gcggataatc gctttgaaat cttcatcttc aatattggcg gttgcctcac tcgttgcggt
     7381 ttggttcgct agaggcagct caatatgtga cagatttgca agtttttgcg taaattcgac
     7441 cgcttgttgg ttcaaattgg tttgttcatt cggttcaaaa cagaaggtgt ttagcaccgc
     7501 agtttcggtt tggtggtcga ttgtaaccag ttgctctgct aaatagaaag tgtaatctgg
     7561 gcaacttaag ccatcatctt gcaggctgat attttccatc ggaataaaat ttgccaccaa
     7621 atcgtagcta aataatccgc ccaaatagat aggcgatgtg gaatcagcaa acagttggct
     7681 caccgttctt agcccgtcaa acacggtggt ggttttgagc ttgctgtctt catctaactg
     7741 gttgctgatg gttgggaaaa tcgcttgcaa gcggtcgttt ttgtctaaaa atttgcaagt
     7801 cggagcaggg tttaacaggc tcaatgcgtt tgcaatcaaa ggtaaaaccg cttctccgtt
     7861 tggggttaaa gcgtggaaag tcacggtttg atcttcacag aaaatatgca ctgccgattt
     7921 cgcaaacagc aaacttttta cactgttttt actttgaatt tccgctgaat ctaataatag
     7981 cgtatgtggg cgttcgccgc ataatgcgta ataaacacgg gtcgtatcgg caaaataggg
     8041 taattctgtt tgagtaatcg ttaattgagg catagcaaat tcctattcaa tttttcgtac
     8101 tattaaacta gtacattaaa aagaagtcaa gcaattattc cagataatta tgcgagcttg
     8161 ggcgaacttg gtgtataatt agcccaattt ttagaaagtc gaaggcttga gactatgaca
     8221 caattttttt atatccaccc cgacaaccca cagcaacgct taattaacca agcggtagag
     8281 attattcgaa acggtggcgt aattgtttac cctaccgatt caggctatgc tctcggttgt
     8341 gcaatgggcg ataagcacgc aatggataga attgtagcaa ttcgtaaatt gccggaaaat
     8401 cacaatttta ccttagtttg tagtgattta tccgagcttt ctatctacgc gttggtcaat
     8461 aatcaagcct atcgcttaat taagaataat accccgaatc cttatacttt tattctgccg
     8521 gcaactaagg aacttcctcg caggctgatg acaaagcgta aaacagtggg gattcgtgtg
     8581 ccggataatg cgatcgcatt ggcgttaatt tccgccttag gtgagccgat tctttcttgc
     8641 tcgttaatgt tgccggagac ggaaatgacc gagtcagacc ctgatgaaat tcgggatcat
     8701 ttgcaaaatc gggtggattt aattatccac ggtggttatt tagggcagca gcctacaacg
     8761 gtagttgact taaccgatga cgtgccggtt attattcgag aaggatcggg cgatccaaca
     8821 tcgtttaatt aaattgatgt tgtatgatta atatatagaa ttatgcgtag gggggctgtg
     8881 ccagtccgta ttaatatcgt tatttggaca ggcacaggac ctgtccctac aatgaaaatc
     8941 aaattcagac gcttgtgaaa gcgacaaaag gaaccttatg acaacttttc aaaaaaaatc
     9001 aactgcgact ttccgtgcag acaaacgtgg tgaaagccgt ccctcattta aaaaagaaga
     9061 gcaaaaatct gaacgcaaat ttggtaaaac gtcagaaaaa ccaccacgtc caacttctaa
     9121 gccattaacg caaagaattg caaaaaaagt ggaaaaaacg accgctagtg aagtggcatc
     9181 tcaagagaaa aaagccaaag tagtaggtga aaagctacaa aaaatcttag cgcgagcagg
     9241 gcaaggttct cgccgtgaat tagaagagat tatcgctgct ggacgagtga gcgtggacgg
     9301 taaaatggct actcttggtg atcgtgtgca ggttagctca tcgactaaaa tccgcattga
     9361 cggacattta gttaatttaa tgccggcaca aaaagagatc tgccgtgtat taatgtatta
     9421 caaaccggaa ggggaacttt gcacccgttc cgatccggaa ggacgatcca ccgtatttga
     9481 ccgcttgcct cgtttaagtg gcgctcgttg gattgcggtc gggcggttag atattaacac
     9541 ctcaggctta ttattgttca ctaccgatgg cgaattagcc aaccgtttaa tgcacccaag
     9601 ccgtgaagtc gaacgtgaat attcggtgcg tgtgttcggc aacattgacg atgcgatgtt
     9661 acaacgctta cgcaaaggcg ttcagttgga agacggaccg gcaaacttta aacaaattaa
     9721 ggttgtgggt ggcacaggct tgaaccaatg gtttgatgtg actttaaccg aagggcgtaa
     9781 ccgtgaggtt cgccgcctgt gggaatcgca aggggtagaa gtcagccgtt tgattcgtat
     9841 ccgttacggc aatatcaaat tagataaagg cttacctcgt ggcggctggg aagaaatggg
     9901 cttagaacaa gtcaattact tgcgtgagct ggtagggtta ccgccggaga ctgaaactaa
     9961 agtggaagtg ggggtaaacc gccgccgaac caatatccgt caaattcgta aagcggtaaa
    10021 acaacatcaa aaatatcgtg gctaaacacc atctttgggg ctgcattagt tctgctaatg
    10081 cagctatttt ctttcaaaaa aggagcattt atgtcttggg atattgttgc aacattggcg
    10141 gtcactggga ttgccgtatt tttatttgca actgaaaaaa tgcgaatgga cgtagttgcg
    10201 attttagtgc tgtgttcatt agtattatta gggcaggttg ataccaaatc tgctctgagt
    10261 ggattttcaa actcagctac tgtaaccgta actgcaatgt ttgtattagc tgctggttta
    10321 caaaatagtg gtgctttaga tagtgtaggc agtttacttg ctaaggtaaa atctccttgg
    10381 ttattcttgc ttgtactctg tggcgtaaat gctgctgttt ctccttttgt gaataatacg
    10441 gcagtggtcg cagtattaat tccgattgtg attgccgcag cacagaatat aaaaatggct
    10501 ccttccaaag cccttattcc gttatcattt tcttctcaaa tggcaggtgt ttgtacactg
    10561 atcggcactt ccactaatct attagttaat gcaatcgctc aaaagcaagg gcattccggt
    10621 ttcggtatgt ttgaatttgc ccctttgggg attatttttt tagtggttgg ggttgcctat
    10681 ttattagtga ccagccgttt cttattaccc gaatcacatt tgcaacttga agatggtgag
    10741 gggtttggaa aatatgtttc tgaacttaaa gtaaataaag actctgtatt aattggcaaa
    10801 agtacatttg aatcaggatt aaatgaagaa tttaatctat ttactattgg tgttttgcgt
    10861 gatggggaaa gattatcgac accgagtcat caagtattgc aaaaacatga tattttattg
    10921 ttgcggggtg aatcggaaaa tttagcaaaa gtacgagaaa aatatggatt gcaccacgtt
    10981 gtgtatggac gccgtgagaa tgatgaagat aatctggatg aagacttgat ggtggctgaa
    11041 gtgatgattt ctcctatttc tcgttggata ggagggacta ttcctatttt acaacagcgt
    11101 tggaataaaa atgcaacggt gttaggcatt caacgccaaa gtaaagtaat tcgtgagcgt
    11161 ttacgcacca ctgcttttaa aatgggggat attttattac tcacattacc aaaagaggat
    11221 atggagacgt tacgccaaga taaagacttt attgtgttat cttctgattt agtcaaaacg
    11281 gaggaatcgt ggaaaagtaa atttgcttta ggggtaatgg ttttggtggt ggcaacagca
    11341 gccttaggct gggttcctat ttcagtgagt gccttaattg gtgcagttgc gatgtgtgtt
    11401 gctggttgtt taacggctga agaagcctat caatctattg actggaaaat cattttagtc
    11461 ttagctggat tactgccatt aggtgaagcg atggcaaata gtggggcggc gcaatttatt
    11521 gttgataaca cgcttggtaa agtaggggag ttcgggcctt tagtggtgtt agctgtatta
    11581 tatttactga caatggtgtt aaccgaattt atgagtaatg cagggactgc cgtgttgctt
    11641 acgcctattg cggtttctac cgctaaaatg ttaggggtag atgcttcccc attcattatt
    11701 gccgtaatgt ttgcggctgc gaccagcttt atgacccctg ttggctatca aaccaacacg
    11761 atggtatacg gtgcaggtgg ctataaattc acagatttta ttaaaattgg tttaccgcta
    11821 aatgtaatct attggatttt agggatagta ttaattccga ttttcttccc ttttaatcca
    11881 taattgatag ataattatag aaaaaaggtt tacagatcag aaactctgta aacctttttt
    11941 attcagcaat aaatcaattt tctattggaa aattaccatt gataacccat gccaatacta
    12001 ccaccaaagt cgcctctggt attgctgtta ccagttaatt tatagataac cttcccgtta
    12061 tctgaaatcc gagaataacc tactgcgatt gcagcttcat tacggtatgt atctccagcc
    12121 gttgctaaca tacttttacc tggtagatat gcttgcggta aacctgcggt tgcagttgca
    12181 ccagcaatac cagcgcgtaa acgtttatca actttgttta cttttgaatc aatattattg
    12241 atcttattat tgatattttt ttctgttgct tttaattggc taaagttaac tgcatcagta
    12301 tcttcagttc ctgcttttac gttagtcact tttgttcctg ctgcattaat acctgtttta
    12361 gttatactcg gtccccctac aatagttaat ccattagtat caatggttgt atcaccagtc
    12421 ttaacagtat cggctacagc aatgttagct gttactgttt gagctgtgac agaattaact
    12481 ttaatatctt tagctaattt aaccgttaat gaaccattac catttgaaat aaccccgata
    12541 ttattatcag ttagttgtga ttcgttagat accccacctt ttactgtaac agtagaacct
    12601 aatttacgtt gagatggcgt gccggtatca cctgcaaatg ttagtgggct ggttactgca
    12661 tcatttaacg cagtaattgc agagcctaca ttattgaccg ttttactaac ttcatttgta
    12721 ggagcgccat caaccacagt atagcttggg gctgaaacag caccatttgc atttacactt
    12781 gaattaccac ctaaagcggt agcaatagta tttgccgtat cgtaaagttg gctaccatta
    12841 actgcatctg ctgagatagg tgaaatatca ccatcagcta cattagttat ttttaatttg
    12901 ccagcatcga cacctgtcat tgtgacactt gggccattat taatggttaa gccgttgtta
    12961 tttagttttg aattaccaac agctacggag ccggcaggag ttaaatcaat gtctttcgct
    13021 aatttaactg ttaatgtgtt agcatctgtt gccactacac cgatattatt atcagtcaat
    13081 atggttgcat cggccccacc tttaacattc agagaagtac ctaatttacg aacaatttca
    13141 gtaccagcat catctacaaa agtaagtgct ccattactta actcattcac tttcgtgttt
    13201 aaaccatcaa tttcggtata agcagcataa agttgtgaac cgttgatagc atccgttgat
    13261 gagtccaaaa tacgacctgc tgcaacattc gttaaagtac gttcattgcc tacagaacca
    13321 atacttacag ttgagcttgg cgtagtacct gcaaatgtgt atgtattgcc atttagcgtt
    13381 gcactttttg ttgcaactgt ggctactgtt tcagagttag tacctaatgc aacagaacct
    13441 tggtgtgttg cttttgcatt ttggccaaga gccactgcag cagttgttgt tgcttgtgat
    13501 gaaacaccta atgcaataga agctacaccg gctgcatttg cactattacc taaagcaatc
    13561 gcagagctac ctgcagcatt ggcatttcta cccacagaag ttgaccatat tccacctgca
    13621 ttagcagagt tacctaaagc ggttgactgt gtacccgaag catttgcgtt atagcctgca
    13681 gcaagagaat ctgcaccgat tgaacttgct tcataaccta cagcggttga attttcaccg
    13741 gtagcttcag atttagagcc taatgcagtt gcacgggtag ctgtcgctgt tgaagctgta
    13801 ccaatagctg ttgaggtatc agcatttgca ttggctgcag aaccaaccgc gagggcattt
    13861 gttgcatttg cattcgcatt gtagcctata gaagtggcat tcataccatc agctgttgcg
    13921 cgaggaccaa ctgcagttgt acgttcaccg tttgcttctg cttcagagcc taatgcggtt
    13981 gccagctcac cattagcact tgttgcaacg ccgatagcca ttggattaac accgctagag
    14041 cctgaattat catagttagc acgttgaatg ccatcatctg aaatactaac ataatgagtt
    14101 gcaaatttgc tgatagcttg tttgagttga ctgacattga ccgcatcagt atctacatcg
    14161 cctgcggcaa cattggcgat tttattaccg ccattatcta agccagattt agtaagactt
    14221 accggtttgt ctgcaacgcc gttagcgatg gtgatacctg tattgttaac aacggtatca
    14281 cctgttgtta atgaaccatt agcgcctaag ttaacttttt ctgctaattt tatggttaaa
    14341 gtactattgc catcagctac aacaccaata ttattctcgg ttaatatgcc tgtagatccg
    14401 cctttgatct tgactgttga acctagatgg cgctcaaaat tagttcctgt atcaccggca
    14461 aaggttaacg gactgatcac cgctgtgttt aatgcgctta gtgctgcaga aacagtagtg
    14521 tatctccctt gtttgccttc tttatctgca tctggtgtgc cattcactaa agcgtaggtt
    14581 gggaaagtga tatttccatt ttcagtaaca gctgccccac cacctaagat atttgcggtt
    14641 gttgcagcaa cattacctat agcttgttgt gttaaatata attgtgaacc gtttatggta
    14701 tctgtagagc ttaaagatat acgtcctgca gcaacattgg tgatagttct ctctttgcct
    14761 tccgccccaa tacttactgt agcaattgga tttgttccag caaagtcact atatgtaata
    14821 ccatttacag ttgcatttgt agttggtatg gctatagctg taactgagtt gctacctagc
    14881 gctatcgaat cggtatgttc agcagtggca tttcgaccta tagcggttgc attaaaggcg
    14941 gaagcatttg atgattctcc gattgcaatt gtgcgttgat ttgttgcttt agcgcttacc
    15001 cctagtgcaa cagaagccgc gcctgatgca gtagcacgat tgcctaaagc ggttgcagaa
    15061 cctccacttg cattggcttc acgaccaaat gcagaagcat aatcgctggt tgcacccgca
    15121 ttagtaccaa cagcagtagt taaatttgct gttgcatttg cataataacc taatgaggtt
    15181 gcaccgtggc ctgaagtctt cgcttcataa ccaattgctg ttgagttatc gccatttgct
    15241 tgagattttg caccaattgc tgtggagtga atagctgttg cgttagcttc agcaccatag
    15301 gcggagctaa caataccagt tgcattggca tgactaccta cagcagttgc ttttcctatt
    15361 accgtttctc ctgttgctgc tgtagttttg taattattaa caccatttgc aagagcggaa
    15421 ttaccgatgg cgatattatc atcactggtt acatttgtag taggtcctgc tagttttgca
    15481 ttagcataag taccaattgc aatattgtgg ctaccactag taccgtctcc agcagtatta
    15541 ccaatagaaa tcgtattgtt tcctgttaca ttagagctag ccgaataacc aataccaata
    15601 ttgtattctg tgctgttaga gtgatttaat ccggcatgat cgccaataaa aacttcacgt
    15661 aagcccattg cggttgcatt gtaccctact gctacggaac gtttatcggc agtggcttgc
    15721 ccaccaacag ctgttgaagc aaaactagcg ttagcaaagc ctcctaatgc agttgaaaaa
    15781 tcggctgtcg cggttgtgtt ataccctaat gctgtagaaa ctttaccgct atttccttct
    15841 aagcctgtta ttgtgcttac tagtgttgag ttaactttag atccatcacc aattgcgata
    15901 gatgtttgtg ggttattatc tggtatggtc ccataggttg gtgaataggt tgcagcactt
    15961 gcaaaacctg cagaaagcgc aagacttagt gtgctgagtt taataatatt agtggttagt
    16021 gatgtatttg ttgcattaga tttattagca cttcttgata attcagaagc aacaatccaa
    16081 gttcgttttg catggttcca aacaatgcga taaattttat tcatagaact actcctgttc
    16141 ttatttttta ataattttaa tgatttgagt attgcctagc caaa
//
LOCUS       DANLVT010000050        15771 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.050, whole genome shotgun sequence.
ACCESSION   DANLVT010000050 DANLVT010000000
VERSION     DANLVT010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15771)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15771)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15771
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.050"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..406)
                     /locus_tag="PXC99_001353"
     CDS             complement(<1..406)
                     /locus_tag="PXC99_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL5417807.1"
                     /translation="MSKNRLEQILLFLKNHNIATVEQLVKVTEASPATIRRDLIKLDE
                     EGVVIRTHGGVSLNQFIPFQPTTNEKQFKQIVEKERIAEYAVSLISPGNSILLDAGTT
                     TLCIAKKIAHMPLRVITTDLHIALLLSEYKQIE"
     gene            complement(514..1740)
                     /locus_tag="PXC99_001354"
     CDS             complement(514..1740)
                     /locus_tag="PXC99_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four-carbon acid sugar kinase family protein"
                     /protein_id="HDL5417808.1"
                     /translation="MKETLLVIADDLTGANDTAVMFAESGFDTVLKTKVSALAQIHPD
                     KAQVISVSTDSRAIGEKAKELTQIAISNAIQNSIGQIYLKIDSTMRGSVKYQIEGAIK
                     AWAGLYPDVKAIICPAYPEMGRTIEAGHLYVNGVPVNETASGKDPICPVHSSSMQKLL
                     PDAQVIPCDTVDNLQASIENSEYKQIVIDAKTHEDLSMIAQVINHIGNKIIPVGSAGL
                     AQKLKNIQNQQQPERNLKLGRALIVVTSIHETSQLQVDEYISTLGGKSIVFNPSPSQL
                     INYSQSEHSLKLQLNALIRFSRDHVIIRANPAKVVNAKSANITETSKEISQHLADLSK
                     FCLDNEKFDSLILFGGDGAAALLDQMNVTEMNVQYAVVPGVPLCSIEKGNYSGITVMT
                     KSGGFGNNTLLSNIMN"
     gene            complement(1737..2735)
                     /locus_tag="PXC99_001355"
     CDS             complement(1737..2735)
                     /locus_tag="PXC99_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxygluconate permease"
                     /protein_id="HDL5417809.1"
                     /translation="MSTQTSKSIVPIYDGMNKIPGGAMVIPLILGSIIGTFFPEFLNL
                     GSFTTALFKSSAGPLIALLIFATGMQITVRSSGPVLAHTGVVLLFKTIIPALLVVILG
                     LWVGNDGVMGVSLLAMLTVVANSNGGIWLAFTGKYGDYRDKGAYVASAVNDGPFFVLL
                     FLGVSGLADIPLSLMLAAVIPLIIGMVIGNLDPKWTELMKPTGAIVIPFFAFALGTGI
                     NLQSIITGGATGIILGIVASLFTGFLVFIGYKTILRRGNQSGIGFAAGTTAGNAIITP
                     EIVAQADPTLAPFVQTATAQIAAAVLVSAILAPLFAAWVLKRQGGLEQDTIKGENL"
     gene            complement(2746..3747)
                     /gene="pdxA"
                     /locus_tag="PXC99_001356"
     CDS             complement(2746..3747)
                     /gene="pdxA"
                     /locus_tag="PXC99_001356"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HDL5417810.1"
                     /translation="MKPILGITMGDAAGIGPEVIIKALANQRIYELAHPVVIGDRKII
                     QRALPIVHSELKLRILNNLDNFVAEYGVIDILDLNNLPEDLPFAQVDPRAGKAAYEYI
                     EEAVNLAMGGKIHAIVTAPLNKEALHAGGKPFPGHTEILATLSNTKDYSMMLTSEKLN
                     VIHVTTHVQLRKACDLITKERVATVIDLAEENARILGFKEPRIAVAGLNPHSGENGMF
                     GDEDQKEIVPAIQEAQAKGFNVTGPVPPDTLFHRAANLNEFDIVVVMYHDQGHIPIKL
                     LGFDTGVNVTVGLPFIRTSVDHGTAFPIAGKGTADSRSMTEALYLGAKMANIKYATH"
     gene            4181..5545
                     /locus_tag="PXC99_001357"
     CDS             4181..5545
                     /locus_tag="PXC99_001357"
                     /EC_number="2.6.1.76"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005820549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminobutyrate--2-oxoglutarate transaminase"
                     /protein_id="HDL5417811.1"
                     /translation="MTIKTPIQAVLASNQYFLDRQDAMESNVRSYPRKLPFAYQKAQG
                     VWVTDVEGNEYLDFLAGAGTLALGHNHPKLIQAVKDVLDSGLPLHSLDITTPLKDAFT
                     EELLSFFPKDKYILQFTGPSGADANEAAIKLAKTYTGRGNVIAFSGGFHGMTHGALSL
                     TGNLSAKNAVQGLMPGVQFMPYPHEYRCPFGIGGEAGAKAVEHYFENFIEDVESGVVK
                     PAAVILEAIQGEGGVVPAPISFLQKVREVTQKHGILMIVDEVQAGFCRSGKMFAFEHA
                     GIEPDIVVMSKAIGGSLPLAVLAIKKEFDAWQPAGHTGTFRGNQLAMATGYVSLKIMR
                     EENLAKNAQERGEYLTNALRELSKELPCIGNVRGKGLMMGIDIVDERQPKDATGAYPR
                     DCDLAVAIQKYCFKNKLLLERGGRGGNVVRVLCAVNITQAECEEFIKRFKQSVAEAVK
                     AVRG"
     gene            5635..7170
                     /gene="ddc"
                     /locus_tag="PXC99_001358"
     CDS             5635..7170
                     /gene="ddc"
                     /locus_tag="PXC99_001358"
                     /EC_number="4.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-2,4-diaminobutyrate decarboxylase"
                     /protein_id="HDL5417812.1"
                     /translation="MSNLEKHRQSLFCSDPKSIADYESAMNNAVKAVSDWLKEEKMYT
                     GGSIKELRAKINGFNPTQAGVGVQKSLEHLVEIFLKPSLKVHHPHSLAHLHCPTMVTS
                     QIAEVLINATNQSMDSWDQSPAGSIMEEHLIDWLRQKVGYGKGTSGVFTSGGTQSNLM
                     GVLLARDWAIANHWKKADGSEWSVQADGIPADAMQKVKVVCSENAHFSVQKNMAMMGM
                     GFQSVVTVPSNANAQMDVEALAKTLADLKAEGKIVACIVATAGTTDAGAIDDLKAIRK
                     LADEHQAWVHVDAAWGGALLLSKDFRHFLDGIELTDSITLDFHKHFFQSISCGAFLLK
                     DEANYRFIDYKADYLNSEYDEEHGVPNLVSKSLQTTRRFDALKLWFTVEALGEELYAS
                     MIDHGVYLSKEVEAYINATDGLEMLVPAQFASVLFRVVPQGYPAEFVDTLNQNVADEL
                     FARGEANIGVTKVGEHQSLKMTTLSPIATLENVRALLAQVLAEADRIKDSIVNGTYVP
                     PID"
     gene            7273..7635
                     /locus_tag="PXC99_001359"
     CDS             7273..7635
                     /locus_tag="PXC99_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NirD/YgiW/YdeI family stress tolerance protein"
                     /protein_id="HDL5417813.1"
                     /translation="MKKVLGLTLMAMALSACNSTASNGSSQANTGVAPANVISVKQAL
                     AAADDSYVTVEGTLLNKVGDETYLFKDATGQIRVEIDDEVWAGQHVGSEGNKVRLYGE
                     IDKGFNKTELDVKTLTVL"
     gene            complement(7725..8312)
                     /locus_tag="PXC99_001360"
     CDS             complement(7725..8312)
                     /locus_tag="PXC99_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL5417814.1"
                     /translation="MNHLIIYAHPNPSSFNHAILEKTIAASVPNKVVVRDLYQLNFKP
                     ILDWAEFQGTLSKHYEADVAIEHQYWLEADVITLIYPLWWMGFPAILKGYLDRVLSYD
                     FAYRNGEIESIGLLTGKKMQQFVTLGNSNEKYERKGFLAAFEHTLGKGLFEFCGIRDV
                     KMHYFGNIGLKETDYTAILQQITASCSTILKEQAV"
     gene            8488..9036
                     /gene="napF"
                     /locus_tag="PXC99_001361"
     CDS             8488..9036
                     /gene="napF"
                     /locus_tag="PXC99_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapF"
                     /protein_id="HDL5417815.1"
                     /translation="MTDYPNQSLPRRSFLRGQFLDSLKSQKVSQQGYEPIRPPWANLA
                     NFLEKCTACGNCIQACETQIIVKGAAGYPEIDFSRGECTFCEKCVHSCEAEVFRAVSE
                     QPWSHKIEIQAGCLLKLGTECRSCGDSCEMRVIRFRPSLGGIAEMVLNLESCNGCGAC
                     LSVCPTSAIKIQPLQTQANRDE"
     gene            9029..9295
                     /locus_tag="PXC99_001362"
     CDS             9029..9295
                     /locus_tag="PXC99_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HDL5417816.1"
                     /translation="MSEKLSEQENWYVCSLVVQAKPEKLEEVKAEILKIPHTEIHGEK
                     TDEGKLVVTIESNVHLALSDRIDQVRDIKGVIVVSLISNYIDEQ"
     gene            9334..11832
                     /gene="napA"
                     /locus_tag="PXC99_001363"
     CDS             9334..11832
                     /gene="napA"
                     /locus_tag="PXC99_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005566990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase catalytic subunit NapA"
                     /protein_id="HDL5417817.1"
                     /translation="MELNRRDFMKANAAVAAAAAAGIMIPVKNVQADDTGIRWDKAPC
                     RYCGTGCSVLVGTKDGKVVATQGDPDAEVNRGLNCIKGYFLSKMMYGADRMQEPMLRM
                     KDGKFDKNGDFTPVSWDQAFSIMAEKIKTTIKNDGPNAVGMFSSGQTTIFEGYAKVKL
                     WKGGFRSNTIDPNARHCMASAAVAFMRTFGMDEPMGCYNDIEKTDAFVLWGSNMAEMH
                     PILWSRISDRRLSDNKVKVVVMSTYEHRSFELADTPIIFKPHSDLAILNYIANYIIQN
                     DKVNWDFVNKHTKFKRGETNIGYGLRPEHKLQQNTNAKTAGKMYDSDFEEFKKIVAPY
                     TLEEAHRISGVPKDQLETLAKLYADPNQKLVSFWTMGFNQHTRGVWVNHMMYNVHLLT
                     GKIALEGCGPFSLTGQPSACGTAREVGTFIHRLPADMVVTNPKHREIVENSWKLPAGA
                     IPDVPGFHATAQSRALKDGKMKFLWQMCTNNMQGGPNINEEIFPGWRNPETFIVVSDP
                     YPSVSAVAADLILPTCMWVEKEGAYGNAERRTQFWRQQVKGPANARSDTWQLVEFSKY
                     FKVEEVWPEELLAKAPELRGKTLYEILYRNGKVDSYQVPTNIPGYMNDEADHFGYYIQ
                     KGLFEEYAEFGRGHGHDLADFDTYHKVRGLRWPVVKDEKTGEYKETLWRYREGYDPYV
                     KAGEEVAFYGNADKKAVILGVPYEPPAEAPDEEYDLWFCTGRVLEHWHTGTMTRRVPE
                     LHKAFPTNLVWMHPNDAKKRGLRHGDKVKVISRRGEYVSNLDTRGRNKCPEGLIYSTF
                     FDAGQLINKVTLDATDPISFETDFKKCAVKVVKA"
     gene            11921..12826
                     /gene="napG"
                     /locus_tag="PXC99_001364"
     CDS             11921..12826
                     /gene="napG"
                     /locus_tag="PXC99_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HDL5417818.1"
                     /translation="MKMDPNRRQFLKNATRTAAGVCGVGMILGLQQQQSFARQGVALR
                     PPGALPEQDFLSACTRCGQCVQACPYDMLHLASLISPVEAGTPYFIARDKPCEMCLDI
                     PCMNACPTGALSEELKDIDDARMGLAVLLDHETCLNWQGLRCDVCYRVCPLIDKAITL
                     EKVHNDRTSIHAKLIPTVHSDACTGCGKCEQACVLEEAAIKVLPMDLAKGLLGRHYRL
                     GWQEKQNAGKSLIEDVHPEGLRPAYDARMPEGLHEPVYQHMEVKPDVKVATPSRATQN
                     YVPNSTTVEAPEHFPDLDLNLKGVK"
     gene            12826..13704
                     /gene="napH"
                     /locus_tag="PXC99_001365"
     CDS             12826..13704
                     /gene="napH"
                     /locus_tag="PXC99_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HDL5417819.1"
                     /translation="MAANSPKNAGLEARQKLGWWHAYRFLILRRLSQLSIILMFLSGP
                     LWNVWILKGNYSGSLLLDTVPMTDPLMTAEVLATGYRPEWTVLVGALIMVAFYGIVGS
                     KLFCSWVCPMNMVTDTAAWLRRKLGIRQTAKIPRNLRYVILAVILVGSAISGTLLWEW
                     INPVAALGRVFVFGLGATLWLVLVVFLFDLLVAEHGWCGHLCPIGATYALIGAKSLIK
                     VKVVDRNRCDNCMDCYNVCPEPQVLRVPLHGKPEESTVILSKDCITCGRCIDVCAENV
                     FAFGMRFQGSIDVKNI"
     gene            13750..14178
                     /locus_tag="PXC99_001366"
     CDS             13750..14178
                     /locus_tag="PXC99_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HDL5417820.1"
                     /translation="MRKYLAFILAVMSGFAMAEAPKLSGSIDETTESVAPGFHNPQKD
                     VGTIPTTFPFQPPLVPHSIRGLQVSKNVNHCLGCHAIEPSKTTGATRLPPSHFTDRDG
                     KVYENESPRRYFCLQCHVQQTDVNPIIQNKFESVRESQAK"
     gene            14189..14797
                     /locus_tag="PXC99_001367"
     CDS             14189..14797
                     /locus_tag="PXC99_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NapC/NirT family cytochrome c"
                     /protein_id="HDL5417821.1"
                     /translation="MLRRFCNWLRSPSKMAIGAVILISALGGIFAWSGFNAGLAMTNT
                     EEFCSDCHMNDVVPEYRASAHYSNRSGVKAICSDCHVPHEFFPKWQRKIIAAKEVYAH
                     FTGKVDTKEKFEAHRGEMAEREWARMKANSSQECRNCHNFDDMDFTQQKNIAQQMHAL
                     AQEQGKTCIDCHKGIAHNLPHMEAIQKNFIPDDLLKKAEEKK"
     gene            complement(14859..15701)
                     /gene="cpdA"
                     /locus_tag="PXC99_001368"
     CDS             complement(14859..15701)
                     /gene="cpdA"
                     /locus_tag="PXC99_001368"
                     /EC_number="3.1.4.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3',5'-cyclic-AMP phosphodiesterase"
                     /protein_id="HDL5417822.1"
                     /translation="MDAKRMHEYIKLPVTGVIKLLQITDPHLFSNPEETLLNVKTVKS
                     FSAVIEQINKQAKQYFDLVLATGDLIQDNNIAGYHYFAQITNSLNSPIVWLEGNHDVQ
                     PSMSEILAQYKHILPHKQILLGEQWQLLMLNTQVVGMPYGELSYSQLKWLEEKLAQYP
                     QRFTLVALHHNILPTNSAWLDQHSLKNSNELSEIFAKFKNVKAIVHGHIHQQVDDIWH
                     GIPIYATPSTCIQFKPNCDQFTLDLQPQGWREIELHENGTIETVVKRLNSNDFLPNVN
                     AIGY"
BASE COUNT         4676 a         3090 c         3456 g         4549 t
ORIGIN      
        1 attctatttg cttatattca gagagtaata aagcaatatg tagatcagtt gtaatcactc
       61 gaagtggcat atgagcgatt tttttcgcaa tgcatagcgt tgtagtgcca gcatctaata
      121 aaatagaatt tcccggtgaa ataagcgaaa cggcatattc agctatgcgt tctttttcga
      181 caatttgctt aaattgcttc tcatttgttg ttggttgaaa cggtataaat tggtttaagc
      241 tgacccctcc gtgtgtgcga atcacgacgc cttcttcatc taattttatt aaatcacggc
      301 ggatagttgc aggagaagcc tcagtcactt ttaccagttg ctctacggta gcaatattgt
      361 ggttttttag gaatagtaaa atttgttcta gacggttttt agacatataa actctctaat
      421 ttttaactgc ttttactata agtaattttt taaaaataag atagttaaaa ttaaagaacc
      481 taaaacattg ttgctttagg ttctttgttg ttactagttc attatattgc ttaagagtgt
      541 gttgtttcca aatcctccag atttagtcat tacagtgatg cctgagtagt tgcccttttc
      601 aatggagcat aaaggaacgc ccggtactac cgcatattgt acattcatct ctgttacatt
      661 catttgatct aataatgctg ctgcaccatc tccaccaaat aatataaggc tatcaaattt
      721 ttcattatca aggcagaatt tacttaaatc agctaaatgt tgagaaattt ctttagaagt
      781 ttccgtgata ttggcagatt ttgcatttac aacttttgca gggtttgccc gaataataac
      841 atgatctcta ctaaaacgta ttagagcgtt taattgtagt ttcagtgaat gttctgattg
      901 cgagtagtta atcaactgtg aaggcgaagg attaaataca atagattttc ctcctaaagt
      961 tgaaatatat tcatcaactt gcagttggct tgtttcgtga attgaggtta cgacaattaa
     1021 tgctctacct aatttaagat ttcgctctgg ttgttgttga ttttggatat ttttcaactt
     1081 ctgtgccaat ccggctgagc caacaggaat aattttatta cctatgtgat ttatgacttg
     1141 ggcaatcatt gagagatctt cgtgcgtttt agcatcaata acgatctgtt tatattcact
     1201 attttcaata gatgcctgca aattatcgac cgtatcacac gggattactt gagcatcagg
     1261 caatagtttt tgcatagaag atgaatgcac agggcagata ggatcttttc ctgaagcagt
     1321 ttcatttaca ggaacaccat taacatataa atgaccagct tctatagttc ttcccatttc
     1381 tggatatgca ggacaaataa ttgctttaac atcgggatat aaaccagccc aagctttaat
     1441 agcaccttca atctgatatt taacagagcc tctcattgtg gaatcaattt taaggtaaat
     1501 ttgcccgata ctattttgaa tagcattgct aattgcaatt tgagtcagct cttttgcttt
     1561 ctctccaatt gctcttgaat ctgtagaaac agaaattact tgggctttat caggatgaat
     1621 ttgggctaat gccgaaactt tagtttttaa gacagtgtca aatcctgatt cagcaaacat
     1681 aaccgcggta tcatttgcac cagtaaggtc atcagcaata actaagagtg tctctttcat
     1741 agattttctc cttttatagt gtcttgttct aagccacctt gacgttttaa aacccacgct
     1801 gcaaataatg gagctaagat tgctgaaact aatacagctg cggcaatctg tgcagtcgca
     1861 gtttgaacaa aaggtgctaa tgtagggtct gcttgagcaa caatttcagg tgtaataatg
     1921 gcatttccag cagtagttcc tgctgcaaac ccgattcctg attgattacc acgtcttaaa
     1981 attgttttgt aaccgataaa tacaagaaaa cctgtaaaga gagaagctac gatacctaaa
     2041 ataattcctg ttgctcctcc agtaataata gattgcagat tgattcctgt tcctaatgca
     2101 aaagcaaaga aaggaatgac tattgcacct gttggtttca ttaactctgt ccatttagga
     2161 tctaagttac caataaccat accaataata agaggaataa cagctgcaag cattaatgaa
     2221 agaggaatat ctgctaatcc tgatacacct aaaaatagta aaacaaagaa aggtccatca
     2281 ttaacagccg aagcgacata agctccttta tctctataat caccatattt ccctgtaaac
     2341 gctaaccaaa taccaccatt tgaatttgca acaacagtta gcatagctaa taaagaaacg
     2401 cccataacac catcattacc tacccataat cctaaaatca caactaaaag agcgggaata
     2461 atagttttaa atagtaatac aacaccggta tgggcaagta caggtccaga acttctcacg
     2521 gtaatttgca tacctgtagc gaaaattaat agtgcaataa gtggtcctgc tgatgatttg
     2581 aataaagccg tcgtaaatga acctaaattt aaaaattcag gaaagaatgt accaataata
     2641 gaaccaagaa ttagcggtat taccattgca ccgccaggaa ttttattcat accatcatat
     2701 atcgggacga tggatttaga tgtttgagta gacatattaa tctccttagt gtgtcgcata
     2761 tttgatattt gccatttttg cacccaaata gagtgcttca gtcatactac gactatctgc
     2821 tgttcctttg cctgctattg ggaaagcagt tccgtgatcg acagatgttc gaataaatgg
     2881 aagaccgaca gtaacgttta cacctgtatc aaagcctaat aatttgatag ggatatgccc
     2941 ttgatcgtga tacatcacaa caacaatatc gaattcattt aggttagctg cacggtgaaa
     3001 taaagtatcc ggagggacag gccctgtaac attaaaccct ttggcttgag cctcttgaat
     3061 tgcgggaaca atttcttttt gatcttcatc gccaaacatt ccattttcac ctgaatgagg
     3121 atttaaacca gcgactgcaa tacgaggttc tttaaaccca agaatgcgag cattttcttc
     3181 tgctaaatca ataactgtag caactcgttc tttggtaatt aaatcacagg ctttacgaag
     3241 ttggacgtga gtagtaacgt gaataacatt gagtttttca ctggttagca tcattgagta
     3301 atctttagta ttactgaggg ttgcaaggat ctctgtatgg ccaggaaatg gtttaccacc
     3361 tgcgtgtagg gcttctttat tcagtggtgc tgtaacaata gcgtggattt ttcctcccat
     3421 tgctaaatta actgcctctt caatatattc ataagctgct tttccagcac gcggatcaac
     3481 ttgagcaaaa ggcaaatctt caggcaggtt attcaaatct aaaatatcaa taacgccata
     3541 ttcggctaca aagttatcta gattattgag aattcttaat ttcaattctg aatgaacaat
     3601 aggtaaggct cgttgtataa tttttcgatc accgatcaca acagggtgtg ctaactcata
     3661 aatccgttga ttagctaatg ctttaataat aacttctggt ccgataccgg cggcatctcc
     3721 catcgtaatt cccaatatag gtttcatatt tactccttga ttgaaattaa tcattttgaa
     3781 cgaagtatag cttatatgaa atcataaaag tgtgataaac atcacaaaag tgaacttttt
     3841 taatcttatt gatttaattt aatcaatttt aaggtggtaa attggatagg gtatgaaagt
     3901 gaaaggcatt tattgctaga taaaagcttc ccttttcaat aaaaaagagt atcatacgct
     3961 ctcttaaacg taaccctaca tttaagtctg tttccaacct atcccaattt ctttattcct
     4021 taggggcata tagggtaaaa acaaaaaagc tgaaacgctt tttttaataa gtagcgagtc
     4081 aaatgcccca tggcatctat tcttttagga atagaaagct taggctttcc gcaaggcacc
     4141 cgacttattt ttttcacctc ttgtagaagg tttattttca atgacaatta aaactcctat
     4201 tcaagccgtt cttgcttcaa accaatattt tttagatcgc caagatgcaa tggaatcaaa
     4261 cgtgcgtagc tacccacgta aattaccttt tgcttaccaa aaagcacaag gcgtttgggt
     4321 aactgatgtt gaaggcaatg aatacctcga tttcctagca ggtgcaggaa cgcttgcatt
     4381 aggtcataac caccctaaat taatccaagc agttaaagat gtattagaca gtggtttacc
     4441 tttacactcg ttagatatta cgactccgtt aaaagatgct tttacggaag aattactctc
     4501 tttctttcca aaagataaat atatcctcca atttactggc ccgtctggtg cagatgctaa
     4561 cgaagcggca attaaattag ccaaaaccta cactggtcgt ggcaacgtaa ttgctttctc
     4621 cggtggtttc cacggaatga cccatggtgc gttatcgctc accggtaatt taagtgcgaa
     4681 aaatgcagta caaggcttaa tgccgggcgt acagtttatg ccttatccgc acgaataccg
     4741 ctgtccgttt ggcattggtg gcgaagccgg tgcaaaagca gttgaacatt attttgagaa
     4801 ctttattgaa gatgttgaaa gtggtgtggt aaaaccggca gcggtgatcc ttgaagccat
     4861 tcaaggtgaa ggcggtgtgg ttccggctcc aatcagcttc ttacaaaaag tgcgtgaagt
     4921 cactcaaaaa cacggcatct taatgattgt ggacgaagtt caagctggtt tctgccgttc
     4981 agggaaaatg tttgcctttg aacacgcagg cattgagccg gatatcgtag taatgtcaaa
     5041 agcgattggt ggtagcttac cgcttgcggt attagcgatc aaaaaagagt ttgacgcttg
     5101 gcaaccggca ggtcataccg gtacattccg tggtaaccaa ttagcaatgg caaccggcta
     5161 tgtatcgctt aaaattatgc gtgaagagaa tttagcgaaa aacgcacaag agcgtggcga
     5221 atacttaact aacgcattac gtgaattaag caaagaatta ccttgtattg gcaatgtgcg
     5281 tggtaaaggc ttaatgatgg gaattgatat tgttgatgaa cgtcagccaa aagatgcaac
     5341 aggtgcatac ccgcgtgatt gcgatttagc cgttgcaatt caaaaatact gctttaaaaa
     5401 caaattgtta ttagagcgtg gcggacgtgg cggtaatgtg gtgcgtgttc tttgtgccgt
     5461 gaatattacc caagcagaat gtgaagagtt tattaaacgc tttaaacaat ctgttgctga
     5521 agcagtgaaa gcggtgcgtg gttaatagtt agaatggtag gagcgaaaca tttttcgccc
     5581 taatgtaaaa aggggcgaat atttattcgc ccctacacca ataggataga aataatgtca
     5641 aacctagaaa aacacagaca atccctgttt tgtagcgatc caaaatcgat tgcggattat
     5701 gaatcggcaa tgaataacgc tgtgaaagcg gtttcagact ggctgaaaga agaaaaaatg
     5761 tacaccggtg gctcaattaa agagttgcgt gccaaaatca acggttttaa cccaacccaa
     5821 gctggtgtgg gcgtgcaaaa atcactggag catttggtgg aaattttctt aaagccaagc
     5881 ctcaaagttc accaccctca ttctttggcc cacttacatt gcccgacaat ggtaaccagc
     5941 caaattgcag aagtgttaat taatgccacc aaccaatcaa tggactcttg ggatcaaagc
     6001 ccggcaggtt cgattatgga agagcattta attgactggc tacgtcaaaa agtcggctat
     6061 ggcaaaggaa cttcaggagt ctttacctca ggtggtacgc aatcaaacct gatgggcgta
     6121 ttattggctc gtgactgggc gatagcgaac cattggaaaa aggcagacgg ttcagagtgg
     6181 tcggtgcaag ccgacggtat tcctgccgat gcaatgcaaa aagtgaaagt ggtttgttcc
     6241 gaaaacgctc acttctcggt gcagaaaaat atggcaatga tgggaatggg tttccaatcg
     6301 gtagtgactg taccgtcaaa tgccaatgca caaatggacg ttgaagctct tgcgaaaacg
     6361 ttggcggatt taaaagccga aggcaaaatt gtggcttgta tcgtcgcaac cgcagggacg
     6421 accgatgccg gtgcgattga tgatttaaaa gcgatccgta aattagccga tgaacatcag
     6481 gcttgggttc acgttgatgc tgcttggggt ggtgcattat tactgtcgaa agatttccgc
     6541 cacttcttag acggcattga attaaccgat tccattaccc ttgatttcca caagcatttc
     6601 ttccaatcaa tttcgtgtgg ggcattcttg ctaaaagatg aagcgaatta ccgctttatt
     6661 gattacaagg cagactacct gaattcagaa tatgacgaag aacacggcgt gccgaattta
     6721 gtgtcaaaat cattgcaaac tacccgccgt tttgatgcgt taaaattatg gtttaccgtt
     6781 gaagccttgg gtgaggagct atacgcttca atgatcgacc acggggttta tctttctaaa
     6841 gaagtggaag cctacattaa tgccaccgat ggcttggaaa tgttagtgcc ggcacaattt
     6901 gcctcagtct tattccgtgt cgtaccacaa ggttacccgg cagaatttgt ggatacctta
     6961 aaccaaaatg tggcagatga gttatttgct cgtggcgaag ctaacattgg tgtgaccaaa
     7021 gtcggtgagc atcaatcact gaaaatgact actttaagcc cgattgcaac gcttgaaaac
     7081 gtaagagcat tattagctca ggtgttggca gaagcagatc ggattaaaga ttcgattgta
     7141 aatggaactt atgttccgcc aattgattaa actgcgttaa aaataaaaag gtgttttcga
     7201 catttatttg tgttttaatg tttgcattcg gtagtcttta tcgaatgcaa atttttttaa
     7261 caaggagttt ttatgaaaaa agtcctgggt ttaacattga tggcaatggc gttatcggcg
     7321 tgtaattcaa ctgcttccaa cggttcttca caagcaaata caggtgttgc accggcgaat
     7381 gtgattagcg tgaaacaggc gttagcggca gcagatgaca gctacgtgac ggtagaaggc
     7441 acactcttaa acaaagtcgg tgacgaaact tacttattta aagatgcgac agggcaaatc
     7501 cgtgttgaga ttgacgatga agtatgggca ggtcagcacg ttggtagcga aggcaataaa
     7561 gtccgtttat acggagagat tgacaaaggt ttcaataaaa ccgagttaga tgttaaaaca
     7621 ctcactgttc tgtagaagat caaaccttaa tttggttccc cgccttgttt ggcggggttt
     7681 ttacgttaat taatcaaacc atccttttgc aaaaaaacgc aaaattatac cgcttgttcc
     7741 ttcaatattg tgctacaaga tgctgtgatt tgctgcaaaa tagcggtgta atcagtctct
     7801 tttaaaccaa tattaccgaa atagtgcatt tttacatcac gaatcccaca gaactcaaac
     7861 agcccttttc ccagcgtatg ttcaaatgct gctaaaaagc cttttcgttc atatttttca
     7921 ttggaattac cgagcgttac aaattgttgc atttttttgc cggtcagcaa gccgatactt
     7981 tcaatttccc cgttacgata ggcaaaatca taacttaaca ccctgtctaa atagcctttt
     8041 aaaattgccg gaaagcccat ccaccaaagc gggtaaatta acgtaatcac atcagcttca
     8101 agccaatatt gatgctcaat tgccacatct gcttcatagt gtttactgag tgtgccttga
     8161 aattccgccc agtctaatat cggcttgaag ttgagttggt agagatctcg tacaaccacc
     8221 ttatttggaa cggaagctgc tatcgttttt tccaaaatcg catggttaaa gctggaggga
     8281 ttcgggtgtg cgtaaataat caggtgattc atagcgtttt cctttactgt gtcgaggcag
     8341 ctactagaag attttagcga aactttcttt gatgaaaatc aatattttgg cgaatatacc
     8401 ggcaaatacc ccgtttgagg aatgaacggt tttaagtgaa cattagataa tttagcctat
     8461 tatagtgatg agtaaaaagg tgttttcttg actgattatc ctaatcaatc acttcctcgc
     8521 cgtagctttt tgcgagggca atttttagac tcgttaaaaa gccaaaaagt cagtcagcaa
     8581 gggtatgagc cgattcgtcc gccttgggct aatttagcaa attttttaga aaaatgcacc
     8641 gcttgcggta actgcattca ggcttgcgaa acccagatta ttgtaaaagg tgctgcgggc
     8701 taccctgaaa ttgattttag ccgtggtgaa tgcacttttt gtgaaaaatg tgtgcattct
     8761 tgcgaggcag aggtattccg agcagtttca gaacagcctt ggagccataa aattgagatt
     8821 caagccggct gtttattaaa gctcggaacg gaatgccgaa gctgtggcga tagctgtgag
     8881 atgagagtga ttcgtttccg cccgagttta ggtggcattg ccgaaatggt attaaatttg
     8941 gaaagctgta atggctgtgg ggcttgtttg agcgtttgtc cgacaagtgc gataaaaatt
     9001 cagccattac aaacacaggc aaacagagat gagtgaaaaa ttatccgaac aggaaaactg
     9061 gtatgtgtgc agtctcgtgg tgcaagcaaa accggaaaaa ttggaagaag taaaagccga
     9121 gattctgaag attcctcata ccgaaattca cggtgagaaa acagatgaag gcaaattggt
     9181 cgtgacgatt gaaagcaatg tgcatttagc cctttccgat cgaatcgatc aagtaagaga
     9241 tattaaaggc gtgattgtgg tgtctttaat ttctaattac attgatgaac agtgattaat
     9301 gattattttt gaagccaaac gtgggacata gttatggaac tcaatcgtag agattttatg
     9361 aaagcgaacg ccgctgtggc agctgctgca gccgcaggaa ttatgattcc tgtgaaaaac
     9421 gttcaggcag atgacaccgg tattcgttgg gataaagccc cttgtcgtta ctgtggtaca
     9481 ggttgtagcg tgctagtcgg tactaaagac ggtaaagtag tggcaaccca aggtgacccg
     9541 gatgcagaag taaaccgtgg tttaaactgt attaaaggtt atttcttatc caaaatgatg
     9601 tacggtgcag accgtatgca agagccaatg ttgcgtatga aagacggtaa gttcgacaag
     9661 aacggcgatt tcacgccggt ttcttgggat caagccttta gcattatggc ggagaagatt
     9721 aaaaccacta ttaaaaatga cggcccgaat gctgtaggta tgttctcatc aggtcaaaca
     9781 accatttttg aaggttatgc gaaagtgaaa ctttggaaag gtggtttccg ttcaaatacg
     9841 attgacccga atgcccgcca ctgtatggcg tccgctgcgg ttgcctttat gcgtaccttt
     9901 ggtatggacg agccgatggg ctgctataac gacatcgaaa aaaccgatgc gttcgtgctt
     9961 tggggttcaa atatggcaga aatgcacccg attttatggt ctcgtatttc tgatcgccgt
    10021 ttatcagaca ataaagtgaa agtggtggta atgtccactt acgaacaccg ttcgtttgaa
    10081 ttagccgata caccgattat cttcaaacca cactcagatt tagcaatttt aaactacatt
    10141 gcgaactaca ttatccaaaa cgataaagta aattgggatt ttgttaacaa acacaccaaa
    10201 tttaaacggg gtgaaaccaa tatcggttac ggtttacgtc ctgaacacaa attacaacaa
    10261 aataccaatg cgaaaactgc cggtaaaatg tatgacagcg attttgaaga gtttaagaaa
    10321 atcgttgccc cttatacatt agaagaagct caccgtattt caggcgtgcc gaaagatcag
    10381 cttgaaacat tagcgaaatt atatgcagat cctaaccaaa aattagtgtc gttctggacg
    10441 atgggcttta accaacatac ccgtggtgtg tgggtaaacc atatgatgta caacgtccat
    10501 ttattaaccg gtaagatcgc attagaaggt tgtgggccgt tctcactcac gggtcagccg
    10561 tccgcttgtg gtactgcccg tgaagtgggt acatttattc accgcttacc ggcagatatg
    10621 gtggtcacaa atccgaaaca ccgtgagatt gtagagaatt cttggaaatt accggctgga
    10681 gcaattcctg atgtaccggg ctttcacgct acagctcaaa gccgtgcctt aaaagacggc
    10741 aaaatgaaat tcttatggca gatgtgtacc aacaatatgc agggcggccc gaatatcaat
    10801 gaagagatct tcccgggctg gcgtaatcct gaaaccttta ttgtggtttc agatccgtac
    10861 ccatctgttt cagcagtggc tgctgactta attcttccaa cctgtatgtg ggtggaaaaa
    10921 gaaggggctt acggtaacgc agaacgccgt acccaattct ggcgtcagca agttaaaggg
    10981 ccggcaaatg cccgttcaga tacttggcag ttagtagagt tctctaaata cttcaaagta
    11041 gaagaagtat ggccggaaga gttattagct aaagcaccgg aattgcgtgg taaaactcta
    11101 tacgaaatcc tttaccgcaa cggcaaagta gatagctacc aagtgccaac taacattccg
    11161 ggctatatga atgacgaagc agatcacttc ggttactaca ttcaaaaagg cttatttgaa
    11221 gagtatgcgg aatttggccg tggtcacggt cacgatttag ccgactttga cacctaccac
    11281 aaagtacgtg gcttacgttg gccggtggta aaagacgaga aaaccggcga atacaaagaa
    11341 actttatggc gttaccgtga aggctatgac ccatacgtta aagccggtga agaagtggca
    11401 ttctatggca atgcggacaa aaaagcagtg attttaggtg tgccatacga accacctgcg
    11461 gaagcaccgg acgaagaata tgacttatgg ttctgtaccg gtcgtgtact agaacattgg
    11521 cacaccggta cgatgacccg ccgtgtgccg gagttacata aagcattccc aaccaacttg
    11581 gtttggatgc acccgaatga tgcgaaaaaa cgaggcttac gtcacggtga taaagtgaaa
    11641 gtgatttcac gccgtggtga atatgtatcg aacttagata cccgtggacg taataaatgt
    11701 ccggaaggtt tgatttactc gactttcttc gatgccggtc agttaatcaa caaagtgaca
    11761 cttgatgcga ctgatccaat ttcatttgaa accgacttca aaaaatgtgc ggttaaagtg
    11821 gtgaaagctt aattgtaggg gcaaattatt tgcctcagac aagcggtcaa atttgcaaat
    11881 ttttttacaa aaacgaccgc ttacctaaga ggaacccaca atgaaaatgg atccaaatcg
    11941 tcgccagttt ttaaaaaatg caacccgtac cgcagccggt gtttgcggtg taggaatgat
    12001 tttagggcta cagcaacaac aaagttttgc ccgtcaaggg gtagcactac gcccaccggg
    12061 tgcattgccg gagcaagatt tcctgagtgc ttgcacccgt tgcggacaat gtgtgcaggc
    12121 ttgtccttac gatatgttgc atttggcatc gcttatttca ccagtggaag ccggcacgcc
    12181 atactttatt gcacgggata aaccttgcga aatgtgcttg gatattccct gtatgaatgc
    12241 ttgcccaacc ggggcattaa gcgaagagct aaaagacatt gacgatgcac gaatggggct
    12301 tgcggtgttg ctcgaccacg aaacttgtct taactggcaa ggcttgcgtt gtgacgtgtg
    12361 ttaccgtgtt tgtccgttaa tcgacaaagc gattactctt gagaaagtgc ataacgaccg
    12421 tacctcgatt cacgccaaac tgattccgac cgtgcattct gatgcttgca ccggttgcgg
    12481 taaatgtgaa caggcttgcg tattggaaga ggcagcgatc aaagtgttac cgatggattt
    12541 agccaaaggc ttgctcggtc gtcactatcg tttaggctgg caagagaaac aaaatgccgg
    12601 taaatcgctg attgaagatg ttcacccaga gggtttacgc ccagcttatg atgccagaat
    12661 gccggaaggc ttacacgagc cggtgtatca gcatatggaa gtaaaacctg atgtgaaagt
    12721 ggctacgcca agtcgggcga cacaaaacta tgtgccgaac tctacgacgg tggaagctcc
    12781 ggagcatttc cctgatttag acttgaatct caagggggtg aaataatggc agccaattct
    12841 ccaaaaaatg cgggcttaga ggctcgtcag aaactaggtt ggtggcacgc ttaccgcttt
    12901 ttgattttaa gacgcttaag ccaactcagc attattttga tgtttttaag cggcccactt
    12961 tggaatgtct ggattttaaa aggaaactac agcggtagct tattactaga taccgtgccg
    13021 atgacagacc cattaatgac cgctgaagtg ctggcaaccg gctatcgccc tgaatggacg
    13081 gtattggttg gggcgttaat tatggtggcg ttttacggca ttgtcggcag caagctgttt
    13141 tgtagttggg tctgcccgat gaatatggta acagatactg ctgcttggtt aagacgcaaa
    13201 ctcggtattc gccaaactgc taaaattcca cgcaatttac gctatgtgat tttggcggtg
    13261 attttagtcg gtagtgcgat ttccggaaca ctattgtggg agtggatcaa cccggttgcg
    13321 gctctcggtc gggtgtttgt attcggttta ggggcaacgc tttggctggt tttagtggtg
    13381 ttcttgtttg acttattggt ggcagaacat ggctggtgtg gtcatctttg cccgattggt
    13441 gcaacgtatg ccttaattgg ggcgaaaagc ctgattaaag tcaaagtggt agatcgtaac
    13501 cgttgcgata attgtatgga ttgttacaac gtttgtccgg aacctcaagt gttgcgtgtg
    13561 ccgctacacg gtaaaccgga ggaaagcacg gttatcttat ctaaagattg cattacctgc
    13621 ggacgttgta ttgacgtttg tgccgaaaat gtatttgcct tcggaatgcg ttttcaaggc
    13681 agtattgatg tgaaaaatat ttaattttta tctttttgaa aacaagaatt ttaatggagt
    13741 gaacctcaaa tgagaaaata tctcgccttc attttagccg tgatgtccgg ctttgcaatg
    13801 gcggaagccc ctaagttatc cggatcaatt gatgagacaa ccgaaagtgt tgcaccggga
    13861 tttcataacc cacaaaaaga tgtgggcacg attccaacca ctttcccttt ccaaccaccg
    13921 cttgttccac atagtattcg tggcttacaa gtgagcaaaa acgtaaacca ttgtttaggt
    13981 tgccacgcta ttgaaccatc taaaaccaca ggtgcgaccc gtttaccgcc aagccatttt
    14041 accgaccgtg atggcaaggt gtacgaaaac gaatctcctc gtcgttattt ctgtttgcaa
    14101 tgccacgtgc aacaaactga tgtaaacccg attattcaaa ataaatttga atctgtacgt
    14161 gaatctcaag ctaaataagg agtaagtaat gttgagaaga ttttgtaact ggttacgtag
    14221 cccaagcaaa atggcaattg gtgctgtaat ccttatttct gcattaggtg gtattttcgc
    14281 ttggagtggt tttaatgcag ggttagcaat gacaaatact gaagagtttt gttcagattg
    14341 ccatatgaac gatgttgtgc cggaataccg tgcctctgct cactattcaa accgcagcgg
    14401 tgtgaaagcg atttgttcag attgccacgt accgcacgaa ttctttccaa aatggcaacg
    14461 taaaatcata gccgcaaaag aagtttatgc acactttacc ggtaaagtag ataccaaaga
    14521 gaaatttgaa gctcatcgtg gcgaaatggc agaacgtgaa tgggcacgta tgaaagcgaa
    14581 cagctctcaa gagtgccgta actgtcataa ttttgatgat atggacttca ctcaacaaaa
    14641 aaacattgcg cagcaaatgc acgcattggc acaagagcaa ggtaaaacct gtattgactg
    14701 ccacaaaggg attgcacaca atctcccaca tatggaagcg atccagaaaa actttatccc
    14761 tgatgatttg ctgaaaaaag cagaagagaa gaaataactt aacgtgtttc aatagaaaac
    14821 cctcaatttc cattgagggt ttctttttag tagccaagtt agtaaccaat ggcattgaca
    14881 tttggtaaaa aatcgttgga atttaaccgc ttgacgaccg tttctatcgt gccgttttcg
    14941 tgcaattcaa tttcacgcca gccttgtggt tgtaagtcta aggtaaactg gtcgcaattc
    15001 ggcttaaatt gaatgcaagt agatggggtg gcataaatcg gaataccatg ccaaatatca
    15061 tcaacctgct gatgaatatg accatgcaca atcgctttta cattcttaaa ttttgcgaaa
    15121 atctcggata attcattgct gttttttaag ctatgctgat ccagccacgc tgagtttgtc
    15181 ggcaaaatat tgtggtgcag agcaaccaag gtaaaccgtt gcggatattg tgccaatttt
    15241 tcttctaacc atttaagctg tgagtaagag agttcgccat aaggcatacc taccacctgg
    15301 gtatttagca tcagaagctg ccattgctca ccgagtaaaa tttgtttatg gggaaggata
    15361 tgtttatatt gcgccaaaat ttctgacata ctcggctgaa catcgtgatt cccctctagc
    15421 cacactatcg gcgagtttag cgaattagtt atctgtgcaa aatagtgata accagcaata
    15481 ttgttatctt gaatcaaatc acctgtggca agaactagat caaaatattg cttcgcttgt
    15541 ttgtttattt gctcaataac tgccgaaaaa ctttttactg ttttgacatt aagtagagtt
    15601 tcctccggat tggagaaaag gtgagggtca gttatttgta ataacttaat tacccctgtt
    15661 acgggtaact taatatattc gtgcattcgt tttgcatcca ttcaaattct agtaattttt
    15721 aactggtgag attctatcag taagctaaaa gtaaaaatgt ggactatgcc g
//
LOCUS       DANLVT010000051        15607 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.051, whole genome shotgun sequence.
ACCESSION   DANLVT010000051 DANLVT010000000
VERSION     DANLVT010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15607)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15607)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15607
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.051"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(199..1074)
                     /gene="ubiA"
                     /locus_tag="PXC99_001369"
     CDS             complement(199..1074)
                     /gene="ubiA"
                     /locus_tag="PXC99_001369"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HDL5417823.1"
                     /translation="MNNETLFSKQKWIAYAQLMRFDKPIGTLLLLHPTLWALFIAAEG
                     MPPVAILAIFTLGVIVMRAAGCVINDYADREIDGHVKRTSQRPLATGRVTTTEAKVIF
                     AILLLFAFLLDLMLNRYAFLLSFVAVFLAVIYPFMKRFTHLPQVVLGMAFGWSIPMAF
                     GAVTETLPLECWLLFFANLAWTVAYDTQYAMVDRDDDLRIGVKSTAILFAQYDNKIIA
                     LLQFITLILLGLLGVVKDYHIGYFVVLALSATLFIYQCWLTKKRERSECFKAFLNNHY
                     FGLGVFVAILVGIYF"
     gene            complement(1067..1828)
                     /locus_tag="PXC99_001370"
     CDS             complement(1067..1828)
                     /locus_tag="PXC99_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family transcriptional regulator"
                     /protein_id="HDL5417824.1"
                     /translation="MKQANRHKKIIELVNQLGYVSTEQLVAELNVSPQTIRRDLNEMA
                     ENNLIRRHHGGAAAPSNTENSDYTHRKQFFSHEKNAIAQQVAKLIPNGASLFLDIGTT
                     SEAVALALLSHKNLKVVTNNLNAAHILMQNEDCQITVAGGGLRSDGGLIGEETVRFIN
                     QFRLDFGILGISAVDMDGSMLDYDYHEVQVKRALMECSRQVVLVTDHSKFTRTAIARL
                     GNVKEVNYLFTDQDLPLELQTHLSQSDVIVKICNE"
     gene            complement(1895..3262)
                     /gene="purB"
                     /locus_tag="PXC99_001371"
     CDS             complement(1895..3262)
                     /gene="purB"
                     /locus_tag="PXC99_001371"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDL5417825.1"
                     /translation="MELTALTALSPIDGRYQDKVASLRPIFSEFGLLKFRVTVEVRWL
                     QKLASHTQINEVPVFSEKANDYLNQIVADFSLEDANRIKTIERTTNHDVKAVEYFLKE
                     KCEALPELQAVNEFIHFACTSEDINNTSHALMLKTAREEVLLPEWKKVIDAVAELAKC
                     YQHIPLLSRTHGQPASPTTMGKEMANVAYRLQRQYKQLENLEILAKINGAVGNYNAHL
                     SAYPEIDWHTFSQEFVESLGVTWNPYTTQIEPHDYIAEFFDCVARFNTILIDFDRDMW
                     GYIALNHFKQRTIAGEIGSSTMPHKVNPIDFENSEGNLGLANAVMAHLGQKLPISRWQ
                     RDLTDSTVLRNLGVGLGYALIAYASTLKGISKLEVNEQHLRDELNQNWEVLAEPIQTV
                     MRRYGIEKPYEKLKELTRGKRVDETAMREFIDKLEIPENEKNRLKEMTPASYIGYAVE
                     LVDKL"
     gene            complement(3296..3925)
                     /gene="hflD"
                     /locus_tag="PXC99_001372"
     CDS             complement(3296..3925)
                     /gene="hflD"
                     /locus_tag="PXC99_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high frequency lysogenization protein HflD"
                     /protein_id="HDL5417826.1"
                     /translation="MADYHDITLAYAGVCQAATLVQQFAHKGMADREAFKCALESLLI
                     TQPESTLSVFGDDLSHLKMGLETALAQTGGGNGKLDTEVGRYWISLLALSQKLNKNPE
                     AKQQLAQRLQQVERQLALYEDNVMADQMIANLAAIYSDIISPLGTKIHVMGMQDYLVR
                     PDIQNKIRASLLAGIRAGILWQQVGGSRWQFLFSRKKIFNQAQKFYRQI"
     gene            complement(4057..5721)
                     /gene="cydC"
                     /locus_tag="PXC99_001373"
     CDS             complement(4057..5721)
                     /gene="cydC"
                     /locus_tag="PXC99_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter ATP-binding
                     protein/permease CydC"
                     /protein_id="HDL5417827.1"
                     /translation="MKSLFPFFALYQTHFGRLLLGVVLAILGLAASIGLLSLSGWFLA
                     ASFLAGNALIFNFFYPSSGVRGLAVGRTISRYFERLVTHDATFRVLANLRASVFKKLI
                     PLSPSGLNRFRNSELLNRLVADVDTLDTLYLNLVSPFVSAVMIIAFMAIGLSFVSVPL
                     MLIICGTLLVLLAVIPTVFYRLGLKLGRNAIQSRANYRSQFIEWVQLNAEFLLFGNLN
                     QMSEKLQQTEQQWLNAQSKESRLSGLSNSLIMLSNGILTCVVIYLVSTSINVPTAKYP
                     EALIALVIFCVMASAEILSPIGIAFLHLGQVITAAERISEITEQQPNVTFGSKAEWQN
                     LSQNQPLVRCENVSFAYYGEQNVLNNLSFKVLKGQKVAILGKTGSGKSTIFQLLNRNY
                     DPTSGQIWLNNCKIDEYSEPMLRSKLVTLSQRVHIFSQTLKDNLLMGNAQATDEQMQE
                     AVRKVGLGHLLETDGLNLWLGEGGRPLSGGEQRRLGLARLLLSSAELVLLDEPTEGLD
                     RETEQQILNLILTHCCDRTLIMITHRQSGLDKFDVVYRIDNGRLVG"
     gene            complement(5721..7487)
                     /gene="cydD"
                     /locus_tag="PXC99_001374"
     CDS             complement(5721..7487)
                     /gene="cydD"
                     /locus_tag="PXC99_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter
                     permease/ATP-binding protein CydD"
                     /protein_id="HDL5417828.1"
                     /translation="MEKQRQRELQKWLKSQQKVIKKYMHLNILLGSFSSLCMIGQMWL
                     IATMLDKMLIGKQSPNSFLVEIMLLFCCFAARAFFIFLRERVGFKAGQTLRLHLRRQI
                     LAKMEAVGPMSIQQKPAGSWATLMLEQVENLHNFYARYLPQQFLSLIVPLLILCFVFP
                     INWAAGAILFATMPLLPLFMILAGMKAVEANQRNIGILSRISGQFLDKLKGLETIRLF
                     GQAEKQTEQIYQSTEDFRISTMDVLKMAFLSSAVLEFFTAVSIAVTAVYFGFIFLGEL
                     DFGYYGTGVTLFIGFFCLMVAPEFYQPMRELGVFYHDKAAAISAADNIETFLKEKVKT
                     QGGNLQENVENQPLVIQAKDCVIFSPQGKALTQALNFELNAHQHIALVGQSGAGKSSL
                     MNMLLGFLPYEGSVTINGTELRDLNLSQWRAKLAWVGQNPQLMHGSLKENILIGNPNA
                     TDSELAKALQLSKADEFVARLGLEHQVQDSNIGISGGQAQRIAIARALLRPYELLLLD
                     EPTASLDMDSEQQVLAALHNLSREQTTLMITHRVEDLTQCDEIWVMKQGQIIQKGRFT
                     ELEHTGFFAELIHNELVHQGEI"
     gene            complement(7602..11699)
                     /locus_tag="PXC99_001375"
     CDS             complement(7602..11699)
                     /locus_tag="PXC99_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translocation/assembly module TamB"
                     /protein_id="HDL5417829.1"
                     /translation="MTDENKQTATNQTDSAQEPQATQPKKSKWRFLKHGFCLTFILLL
                     LAILFLCTGYGQRKVLSWVDKFVEPLQLGQVQGSLQDGLQLSDARFVMDGVNVTVGQA
                     DLHIGFSCLLHYEMCLNNLSLKDTEVLIDTTKLPPSQPKEETEPFTELNLPLGISAQN
                     INLENIKVKVDDMDIHLNHFHTALSGKGRAITVHPTQLEGLNLLLALKLDETDTEQAV
                     DFAQKNAKTEALSATNPQEIADKVIQEAVEKTSEKVVEGFHQLQRKTVAQAEQVDNKV
                     DWAAIKAQLAQPLLDKNIRFSLPLDLNIEQIDIANVAIAQKAKDEKGNLIEPISLLNV
                     ASLQLQAQAKDQHINLKSLDFKSDQGDLTASGSLSLQDNYPLSWTLSGHEAKTAKVKL
                     PFNQIEASLSGELYDKTSLKVKTAGAISASLEGNVALAQAKTPFDLSLKSESMRYPFA
                     PQQNGDVLSLENIAMRLNGNLLDYALEAKVSAKGMGVPASSASLTGKGELTHFNIQDL
                     SLNTLEGTAKIDGLVDWSEGVAWRSNLKLQHINTKSLLADWPAVLSGSLSSEGYAGRG
                     NSASGWKADVSNIDIKGSLLQKNLHLSGNLKADHQQLLDVPGLSLVYGENKIDLKGVL
                     GEKSDFYADIKAPNLQGLVPNLKASVNGNAKLSGKVSEPNIDLDLVASNVGYEQFKLQ
                     NLTAKGKITTEKTIQGDLTLGLRQFAYNEIKVGNATLLLKGNEENHSLKLSAKGNPVG
                     ADLQISGKFDRLKEIWEGQLSQVSIQSTEFGQFQADKAVNVKYDNKAINANISAHCWH
                     NRKINLCFPTAFNAGVEGKVPFEIRNFDLAVLQQFLEKNSQLSGIVNAKGDAAWFKNK
                     QPQVNLDLTSNAIKFIQKMEGGKSFPLTVSPLKIDLKMSDNNLTLKSDLRVENNGRLS
                     TDLVMKDLSKARALSGNIHLDQLSLKLIRPLLERGDSVDGNVNARLTVSGTATSPLLH
                     GNLNVTELKARSVTMPFDITGGNLAMNFHGATSTLSGKLQTKQSELRLEGDADWRDLN
                     AWKTRVHAQANRFQVDIPNIAKVAVSPDIQVTATPTLLTLSGNVDIPWARIEVEQLPE
                     SAVSVSGDEVIMDGSVKNKVPFSQRNIPAQTSGGMAINADIKINIGNDVKLKAYGLNS
                     NVNGLLSVRQGKQGLGLYGQVHLREGRFAAYGQDLLIRKGDISFAGSPSQPTLDIEAI
                     RNPEAMEDPTITAGVRVTGLADNPTVKVFSDPAMSQNEALSYILTGRSLESSGDTSSS
                     NAVAAALLSMSLSKSSKLVGDVGSTFGLKDLSVTTAGIGDNTKVEVSASLAPKFRVKY
                     GVGIFAPLTELTLRYNLTPRLYLQWVSSINQAVDLMYRFEFDELF"
     gene            complement(11780..13615)
                     /locus_tag="PXC99_001376"
     CDS             complement(11780..13615)
                     /locus_tag="PXC99_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor"
                     /protein_id="HDL5417830.1"
                     /translation="MNTKLHFLTFCCLVAFASMAQANQEQRLSDVDRERVENLQEKLA
                     EDSDDEPEIEPLVTLEVKGIQGKDAKKNVELYLDQIANEYADGSERYQYLVQTTVDKA
                     LRALGYYNSRYQFVQLPQEGKKPLLVLNVELDKETVKIDETDIVLQGDAKTDEDFAHL
                     VSKAPKQGSRLNHKTYDNFKGDIESTAFSKGYFDGHWLYHRLEVYPTDHKADWRLGYD
                     SGKRYHYGQIRFVDSQIKEEYLQNILKIHSGEPYLANDLSILTQDYLSSNWFSSVMVE
                     PHLNEQDKLVDLNVLFQPKKRNEVEIGIGYETEVGPRLQLNWKKPWLNSRGHSIESRT
                     YVSKPEQTFEFGYNIPLREDPLHYYYQLSGTLENEDQNDTKSTAATLGLQRFWTHETG
                     WSFSVGLKARYDSFTQANDRFKTLLVYPTASLNRTRTDGKPYPLWGDTQKLTVNWGSR
                     AVGSDVNFYSYKASTSWARTYFDNHRFYLRAELGYLKANQFERIPPALRYFAGGDMSV
                     RGFGYKDISPRDPSNGKRVGGSHLATGTVEYQYQVYPNWWGAIFYDAGLASNKFKTQD
                     LYYGTGLGVRWASPIGAIKFDVATPVKSPDNSKGIQIYIGLGSDL"
     gene            complement(13627..14472)
                     /locus_tag="PXC99_001377"
     CDS             complement(13627..14472)
                     /locus_tag="PXC99_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HDL5417831.1"
                     /translation="MFKQINKRLNFNIFLQMFVLFTPLVQAAQMAIVIDDVGYRIKED
                     REILALPKAVSVAIIPVAPYATERAKDAYNQKRDILIHLPMEPKSKQPIEEGGIHIGD
                     NEEKIRKLIHTSRGQVPYAIGLNNHMGSGATSDSATMQHLLKVLKENTLFFLDSKTIG
                     SSVAAKTARQFGINTLERDIFLDDSDLLADVQKQFAHAINHARKNGVAVVIGHPRKNT
                     ISVLKQNLAQLPQDIELVSVGNLWRNEKTVPDKPFIMLFEQEPALSSVPPYDSIPLLR
                     GIPKE"
     gene            complement(14473..15582)
                     /locus_tag="PXC99_001378"
     CDS             complement(14473..15582)
                     /locus_tag="PXC99_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDL5417832.1"
                     /translation="MSFSTPFSFANNLNQIQQKIQQQTSKINEQKQKRNALQSTLKNQ
                     EVEMGKVLDKLQKTEMSLTEVRQTIKATETEIARLEKLEKQQKEKLKEQLDSAYRSGV
                     NPSVLERLMSEEAKNAERMTAYYQHMNNIRIDAIVEIRKTQADLKARRDELKGQQKDH
                     QTQLNEQKKQEKDLKKVQSQRESTLRLIDKTLEQDQSRLENLRSNEQALKQQLEQAQR
                     EAQQAEKREQQREKQAKSGQSKTTENVERTPIKAGRYTMPVSGNIITPFGNNWHGVVI
                     GASAGTSVRAMASGRVIMAQWLAGYGNMVAIDHGNGDISLYGYNQSISVSKGSRVQGG
                     QVIAKVGNSGGQSRSALYFGVTRKGTPINPLNLVK"
BASE COUNT         4366 a         3510 c         2926 g         4805 t
ORIGIN      
        1 gtaatgtccc ttttttgaat gtctactaca aaatgggata ttttacaaac cgattgacta
       61 atgaagcaag aatataatta actacaactg gatatatttt gcaaatttcc cgataaattt
      121 caccgcttgt agataaaaac cgtagataaa aaccatagat aaaaaatagg agctaaacat
      181 ttttagcccc taccgtcatc agaaataaat cccgactaaa atcgccacga acacacctaa
      241 gccgaaatag tggttattta gaaacgcttt aaagcattcg ctacgttctc tttttttggt
      301 cagccaacat tggtagataa acagcgtggc acttaaggct aatacgacaa aatagccgat
      361 gtgataatct tttaccacgc ccaataaccc caataaaatc aaggtgataa actgtaataa
      421 cgcaataatt ttattatcgt attgagcgaa taaaattgca gtggatttaa ctccaattcg
      481 taaatcatcg tcacgatcaa ccattgcata ttgggtgtcg taggcgactg tccacgctag
      541 attggcaaaa aacagcagcc agcattcaag tggaagagtt tccgttaccg caccaaatgc
      601 catcggaatc gaccaaccga atgccattcc aagcactact tgtggcaagt gggtaaaacg
      661 cttcataaag ggataaatca ccgccagaaa aactgccaca aaggaaagca gaaacgcata
      721 gcggtttagc attaaatcga gcagaaaagc gaacaacagc aagatggcaa aaatgacttt
      781 tgcctcagtg gtggtcactc tgccggtagc taatgggcgt tgagaggtgc gtttaacgtg
      841 tccgtcaatt tctctatcgg cataatcatt aatcacacaa cctgccgcac gcataacgat
      901 taccccaagg gtaaaaatgg ctaaaatcgc aacaggcggc attccctctg cggcaataaa
      961 taacgcccat agtgtggggt gtaataataa taacgtgccg atgggtttat cgaaacgcat
     1021 taactgggcg taggcaatcc atttttgttt agaaaaaaga gtttcgttat tcattacaaa
     1081 ttttgacgat aacgtccgat tggcttaaat gagtctgtaa ttctaacggt aaatcttgat
     1141 ctgtaaacaa ataatttact tctttaacat ttcctaaacg tgcaatagct gtacgggtaa
     1201 actttgaatg atcggtcact aaaaccactt gtcgggaaca ttccattaat gcacgcttta
     1261 cctgcacttc gtggtaatcg taatcgagca tagagccgtc catatccacc gcactaatgc
     1321 ctaaaatccc aaagtccaaa cggaattggt taataaagcg aaccgtttct tctccgatta
     1381 gcccgccatc acttcttagc cctccgcctg ctaccgtaat ttggcaatct tcattttgca
     1441 tcagaatatg agccgcattt aaattattgg taactacttt taaattttta tgcgaaagta
     1501 aggctaatgc cactgcttct gaagtcgtgc caatatctaa aaataatgat gctccatttg
     1561 gaatcagttt tgccacctgt tgggcaatcg catttttctc gtgtgagaaa aattgcttgc
     1621 ggtgggtgta atcactattc tccgtattgg aaggagcggc tgccccaccg tgatgacggc
     1681 gaatcagatt attttctgcc atttcattca gatcacggcg aatggtttgc ggactcacat
     1741 tcaattcagc cactaattgc tcggtactca catagccaag ctgattaacc agctcaatga
     1801 tctttttgtg tctgtttgcc tgtttcatat ttcctctttt gcaaataatt tgcagaaaaa
     1861 gaccgcttgc aagcggtctt ttttcagtta aattttacaa tttatcaaca agttcaaccg
     1921 catagccgat atagcttgcc ggtgtcatct ctttcaaacg atttttttca ttttccggaa
     1981 tttccaactt atcgataaac tcacgcattg cggtttcatc aacccgtttg cctcgagtca
     2041 gctctttaag tttttcatac ggtttttcaa tgccataacg acgcataaca gtttgaattg
     2101 gctctgccaa tacttcccag ttttggttga gttcatcacg caagtgttgt tcattcactt
     2161 ctaatttgct aatacctttt aaggtggacg cataagcaat taacgcataa cctaaaccta
     2221 cacctaaatt acgcaacacg gtggagtcag ttaagtcacg ctgccagcga gaaatcggca
     2281 atttttgccc caaatgagcc attaccgcat ttgccaagcc aagattgcct tcggaatttt
     2341 caaaatcaat cgggttcact ttatgtggca ttgtgctaga gccgatttca ccggcaatag
     2401 tgcgttgttt gaagtgattt aaggcaatgt agccccacat atcacgatca aaatcaatta
     2461 aaatcgtatt aaaacgagcc acgcaatcaa agaactccgc aatataatcg tgcggttcaa
     2521 tttgggtggt gtatgggttc cacgtcacac ctaacgattc cacaaattct tggctgaaag
     2581 tgtgccaatc aatctccgga tatgctgata aatgtgcgtt atagttgccc actgctccat
     2641 tgattttagc gagaatttct aaattttcta actgtttata ttggcgttgt aaacgatatg
     2701 ccacatttgc catctcttta cccattgtgg tcgggcttgc cggctgaccg tgtgtgcgag
     2761 aaagcaacgg aatatgttgg taacatttcg ccagctctgc tacagcatca atcacttttt
     2821 tccattcagg taataatact tcttcacgag cggttttaag cattaaagcg tgcgaagtat
     2881 tattgatatc ttcagaagta caagcaaaat gaataaattc attcaccgct tgtaattcag
     2941 gcaacgcttc acatttctct tttaggaaat actccaccgc ttttacatcg tggttggtgg
     3001 tacgttcaat cgttttaatc cgattggcat cttctaacga aaaatcagcc acaatttggt
     3061 ttaggtaatc gtttgctttt tcagaaaaca ctggaacttc attaatttgt gtatgcgatg
     3121 ccaatttttg taaccagcga acttccaccg tcacacggaa ttttaataag ccaaattcac
     3181 taaaaatcgg acgaaggctc gcaactttgt cttgataacg tccatcaatc ggggataacg
     3241 cagttaaagc ggtaagttcc attgttttat attctccaaa taggtaaatg ttcggttaga
     3301 tttgacgata aaatttctgt gcttggttaa aaattttctt gcgtgaaaat aaaaattgcc
     3361 aacggcttcc gccgacttgc tgccacaaaa taccggctcg aataccggct agtagcgagg
     3421 ctcgaatttt attctgtata tccgggcgaa ccaagtaatc ttgcattccc atcacgtgaa
     3481 ttttcgtacc taacgggctg ataatatcgc tataaatagc ggctaaattg gcaatcattt
     3541 gatctgccat cacattatct tcatacaggg ctaactggcg ttccacttgc tgtaaacgct
     3601 gggctaactg ttgttttgct tcagggtttt tattgagttt ttggctaagg gcgagcaggc
     3661 ttatccaata acgtccgact tcggtatcta atttgccgtt accgccgcca gtttgagcta
     3721 atgcggtttc taagcccatt tttaaatggg aaagatcatc gccaaataca cttaacgttg
     3781 attccggctg agtgattaac aggctttcta aagcacactt aaaagcctct ctgtctgcca
     3841 tgcctttatg tgcaaattgt tgcactaacg tcgccgcttg gcaaacgccg gcataagcaa
     3901 gggtaatatc gtggtaatcc gccatctctg taaaattcaa tatgataaaa cattagtggg
     3961 aatatagcat tttttcagct tcttttgaat ggcaaaaggc atttattcta ttgaaaaata
     4021 aatgcctttt cattaatacg caatttgctg caaaaactat cctaccaatc gcccattatc
     4081 tattcgataa accacatcaa atttatccag tccgctttgg cggtgagtga tcataattaa
     4141 ggtgcgatca cagcagtgag tcaaaattag gtttaaaatc tgctgttcgg tttctctgtc
     4201 cagtccttct gttggctcat caagtaagac taattcagca gaactcagga gcaaacgggc
     4261 aagccctaaa cggcgttgtt cgccaccaga aagcggtctg ccgccctcgc ctaaccataa
     4321 atttaagccg tctgtttcaa gcaaatgccc taagcctact tttcttactg cttcttgcat
     4381 ttgttcgtct gtagcttgag cattccccat taataaatta tcttttaggg tttggctaaa
     4441 aatatgcact cgttggctta aggtaactaa ttttgagcgt aacatcggct ctgaatattc
     4501 gtcaatttta caattattca gccaaatttg accgcttgta gggtcgtagt tgcggtttaa
     4561 cagttggaat atggtcgatt ttccgctacc cgttttacct aagattgcca ctttctgccc
     4621 ttttaatacc ttaaaggaaa gattatttag tacgttttgc tcgccgtaat aagcaaagct
     4681 cacgttttca cagcgtacaa gcggttgatt ttggctcaaa ttttgccatt ctgccttgct
     4741 accaaatgtt acattaggct gttgttcggt aatttcacta atccgctcgg cggcggtaat
     4801 cacttgccct aaatgcaaaa aggcgatacc aatcggggaa agaatctccg ccgatgccat
     4861 tacacagaaa atcactaacg caattaaggc ttcagggtat tttgcagtgg gcacattaat
     4921 cgaagttgaa accaaataga tcaccacaca agtcaaaatg ccgttggata acattatcaa
     4981 gctatttgat aagccggaca gtcggctttc tttgctttga gcgttcagcc attgttgttc
     5041 agtttgctgt agtttttcgc tcatttggtt caagttgcca aagagtaaaa attctgcatt
     5101 taactgtacc cactcaataa attggctgcg gtaatttgct cggctttgta ttgcattacg
     5161 ccctaatttc aaacccaatc gataaaatac ggtaggaata acggcaagca ataccaatag
     5221 tgtgccgcaa atgatcagca ttaatggcac ggaaacaaaa gaaagcccga ttgccataaa
     5281 tgcaataatc atcactgcac tgacaaaagg cgagactaaa ttcagatata gggtgtctaa
     5341 cgtatccaca tctgccacca agcggtttaa caattcgctg tttctaaagc gatttagccc
     5401 gcttggactc agtggaatca attttttaaa gacgctagca cgcaaattcg ccaatacccg
     5461 aaaagtcgca tcgtgggtga ctaaacgttc aaagtaacgt gaaattgtcc gccctactgc
     5521 caaccctctc acccccgatg aagggtagaa aaagttaaaa ataagcgcat tgccggctag
     5581 aaatgaggca gctaaaaacc aaccggaaag gctgagcaaa ccgatacttg ccgctaatcc
     5641 taaaattgcc agcacaacac ctaataatag tcgcccaaaa tgggtttggt agagagcaaa
     5701 aaacgggaac aacgatttca ttagatttct ccctgatgca ctaattcatt atgtattaat
     5761 tccgcaaaaa agccggtgtg ttctaattca gtgaaacgac ctttctgaat gatttgccct
     5821 tgtttcatca cccaaatttc atcgcattgg gttaaatctt ccactcgatg agtaatcatt
     5881 agcgttgttt gctctcggct gagattatgc agagcggcta acacttgctg ttccgaatcc
     5941 atatcaaggc ttgcagtcgg ctcgtctaac agtaataatt cgtacgggcg aagcaacgct
     6001 cgtgcaatcg caatccgctg tgcttgcccg ccagagatac cgatattact gtcttgcact
     6061 tgatgctcca accctaaacg tgccacaaat tcatcggctt ttgaaagctg taatgccttg
     6121 gctaattcag aatctgtcgc attagggttg cctattaaaa tattctcttt caaactgcca
     6181 tgcattaatt gcggattttg ccccacccac gctaatttcg ctcgccattg gcttaaattt
     6241 aaatctcgca gttcggtgcc gttaatcgta accgaccctt cataaggcaa gaaaccaagt
     6301 aacatattca ttaatgaact ttttcctgca ccactttgcc caaccaaagc gatatgttgg
     6361 tgtgcattca actcgaaatt taacgcttgg gttaaggctt tgccttgtgg tgagaagatc
     6421 acgcaatctt tggcttgaat cacaagcggt tgattttcaa cattttcttg caaattgcca
     6481 ccttgcgttt tcaccttttc ttttaagaaa gtttcgatat tatctgcggc actaatcgct
     6541 gctgccttgt cgtgataaaa cacgccaagt tcacgcatcg gttggtaaaa ctcaggtgcc
     6601 accattagac aaaagaagcc gataaataag gtcacgcccg taccataata gccaaaatcc
     6661 agctcaccta aaaaaataaa gccaaaatag accgccgtca ccgcaatcga taccgccgtg
     6721 aaaaactcca ataccgcaga ggataaaaac gccattttta gtacgtccat cgtactgatt
     6781 cggaaatctt cggtgctttg gtagatttgt tcagtctgct tttccgcttg cccaaataag
     6841 cgaatggttt ctaaaccttt taatttatct aagaactgtc cgctaatacg ggaaagaatg
     6901 ccgatattac gctgatttgc ctccactgct ttcattccgg ctaaaatcat aaataaaggt
     6961 aataatggca ttgttgcaaa taaaatagcc cctgctgccc agttaatcgg gaatacaaaa
     7021 cagaggatca gtaatggcac tatcagcgat aaaaattgct gtggcaaata gcgtgcgtag
     7081 aaattatgta gattttccac ctgctcgagc attaaggttg cccagctgcc cgccggtttt
     7141 tgttgaatgc tcatcggccc gactgcttcc attttggcta gaatttggcg gcgaagatgt
     7201 aaacgcaagg tttgccctgc tttgaaaccg acacgctcac gcagaaaaat gaagaatgct
     7261 ctggcagcaa aacaacagaa taagagcata atttcaacca gaaagctatt cggtgactgc
     7321 tttccgataa gcattttgtc taacattgtg gcaatcagcc acatctgtcc aatcatacat
     7381 aaactactga aactccctaa cagtatgttt aagtgcatat attttttgat gactttttgc
     7441 tgacttttaa gccatttttg taattcgcgt tggcgttgtt tttccataat tttgtcaatt
     7501 tttttgtttt ttcaaccgct tgtaaatcgg gtttgccatt ctactataaa gcaaaaaggt
     7561 tgttaatggc gaaacattaa caacctttca ttcagcctta actagaatag ctcgtcaaat
     7621 tcaaagcgat acattaaatc taccgcttgg ttaatacttg agacccattg taagtacaat
     7681 cttggcgtta aattatagcg taaggttaat tcggtaagcg gtgcaaaaat gcccacgcca
     7741 tacttcactc tgaatttagg ggcaaggctg gcacttactt ctactttggt gttatcgcca
     7801 atacctgcgg tggtcacgct taaatctttg agtccgaaag tgctaccaac atcacccacc
     7861 aatttactgc tttttgataa gctcatactg agtaatgccg ctgcgactgc attactggag
     7921 ctggtatcgc cactgctttc caatgaacga ccagttaaaa tataggaaag tgcttcattt
     7981 tgcgacattg ccggatcaga gaatactttt accgttggat tgtctgccaa accggtcact
     8041 cttaccccag ctgtaatggt cggatcttcc attgcctccg gattgcgtat agcttcaata
     8101 tctaaggttg gctgagacgg tgagccggca aaactaatat cacctttacg aatcagcaag
     8161 tcttgaccat aagcggcaaa tcgtccttca cgcaaatgaa cttgcccgta aagccctaaa
     8221 ccttgtttgc cttgcctgac agacaataag ccattcacgt tactgtttaa accataggct
     8281 ttgagtttga catcattacc gatgttaatc ttaatatctg cattaattgc cattccacct
     8341 gaggtttgag ccggaatatt acgttggcta aacggcactt tatttttcac agagccgtcc
     8401 ataatcacct catctccact tacactgacc gcactttcag gtaactgctc gacttcaatt
     8461 cttgcccaag ggatatctac atttccactt aaggttaaaa gagttggcgt tgccgtcact
     8521 tgaatatccg ggctaactgc cacttttgcg atattaggaa tatccacttg gaaacggtta
     8581 gcttgagcgt gaacccgtgt tttccacgca tttagatctc gccagtctgc atcaccctcc
     8641 aaacgcagtt cgctttgttt ggtttgtaat ttaccgctta aagtcgatgt tgccccgtgg
     8701 aaattcattg ctaaattccc acctgtaata tcaaacggca ttgtaacaga gcgagctttt
     8761 aactctgtaa cgtttagatt tccgtgcaat aacggagagg ttgcggtgcc gctcacggta
     8821 agacgagcat tcacattgcc atcaaccgaa tcgccccgtt caagtagcgg tcgaatcagc
     8881 tttaagctta attggtcaag atgaatattg ccggataacg cacgagcctt acttaaatct
     8941 ttcatcacta aatcagtcga aagtctgccg ttattttcga cccttaaatc agatttaagg
     9001 gttaaattat tgtcagacat tttcagatca attttaagcg gtgaaacggt gagtgggaaa
     9061 ctttttcccc cctccatttt ttgaataaat ttaatcgcat tagaggttaa atccagattc
     9121 acttgaggct gtttgttttt aaaccaagct gcatcgcctt tggcattcac aatccctgaa
     9181 agctggctgt ttttctccaa aaattgttgc aataccgcta aatcaaagtt acggatttca
     9241 aaaggcactt taccctcaac accggcatta aatgcagtcg ggaaacaaag attaattttc
     9301 cggttatgcc aacaatgtgc ggaaatattg gcgttaatgg ctttattgtc atatttcaca
     9361 ttcactgctt tatctgcttg gaattgacca aactcggtgg attgaatcga aacttggctt
     9421 aattgccctt cccaaatttc tttcaaacgg tcaaattttc cagaaatttg caaatcagca
     9481 ccaaccggat tgccttttgc acttaatttc aagctatgat tttcttcatt tccttttagc
     9541 aataaagtgg catttcccac tttgatttca ttataggcaa attgacgtaa ccccaaggtt
     9601 aaatcccctt gaatggtttt ctcagtggta attttgcctt ttgcggttaa attttgcagt
     9661 ttaaattgct catagcctac atttgaggcc actaaatcta aatcaatgtt aggttctgaa
     9721 accttacccg ataatttggc attaccattc acgctggctt ttaaattcgg cactaaccct
     9781 tgcaaattag gggctttaat atccgcatag aaatcagatt tttcgcctaa cacgcctttt
     9841 aaatcgatct tattttcacc atacaccagc gataagcccg gaacatctaa aagttgttga
     9901 tgatcggctt ttaaattacc gcttaagtgt agatttttct gtaataacga acctttaata
     9961 tcaatattcg agacgtccgc tttccatccg ctagctgaat tgccccgtcc tgcataacct
    10021 tcggaagata aagaaccgga caataccgcc ggccagtctg ccagtaggga tttagtgtta
    10081 atatgctgaa gtttcaaatt tgaacgccac gcaacgccct cgctccaatc cactaaaccg
    10141 tcgatcttcg ccgtaccttc cagcgtattg agacttaaat cttgtatatt aaaatgggtt
    10201 aattcccctt tgccagttaa actagccgag cttgcaggca cgcccattcc tttggcactg
    10261 actttagcct ccaaagcgta atccaggaga ttgccattaa gcctcatggc gatattctct
    10321 aaactcagca catcaccatt ttgctgagga gcaaacggat aacgcattga ctcactcttc
    10381 agcgataaat caaagggagt tttcgcctga gccagtgcaa cattgccctc caacgaggcg
    10441 ctaattgcac cagccgtctt cacttttagg ctggttttgt catatagctc accggaaaga
    10501 gaggcttcaa tttgattgaa cggcaatttt actttcgccg tttttgcctc gtgaccactt
    10561 agcgtccaac ttagcggata attatcttgt aacgataaag aaccgcttgc ggttagatcc
    10621 ccttggtcgc ttttgaaatc taaacttttt aggttgatat gctgatcttt tgcttgagcc
    10681 tgaagctgta aagaggcaac atttaacaat gagatcggct caatcaaatt ccctttttca
    10741 tctttagctt tttgagcaat cgctacattc gcaatatcaa tctgttcaat attgagatca
    10801 agaggcaaac taaagcgaat atttttatcc aataacggct gtgctaattg tgctttaatc
    10861 gctgcccaat ccactttatt atccacctgt tcggcctgtg caacagtttt tctctgtaat
    10921 tggtgaaagc cctctacgac tttttcactg gttttttcca ccgcctcttg aatcacttta
    10981 tcagcaatct cttgtggatt tgtcgctgat aacgcctctg tttttgcatt tttttgtgca
    11041 aaatcgaccg cttgttcagt atcagtttcg tctaacttta aggctaaaag cagatttagc
    11101 ccctctaact gtgtcgggtg aacggtaata gcccgccctt taccagaaag tgcagtgtgg
    11161 aaatgattaa gatgaatatc catatcatca actttgacct tgatattctc taaattgata
    11221 ttttgagctg aaatccccaa tggcaaattt aattcggtga aaggttcggt ctcttctttt
    11281 ggctgagaag ggggtaattt agtcgtatca atcaacacct ctgtatcttt aaggctgaga
    11341 ttattcaaac acatttcata gtggagcaag cagctaaaac caatatgcag atctgcttgc
    11401 ccaaccgtta cattcacacc gtccatcaca aatcgggcat cagaaagctg taacccatct
    11461 tgcaggctac cttgcacttg cccaagttgt aatggctcta cgaatttatc tacccagctt
    11521 aacactttac gttgcccgta acctgtgcat agaaagagaa tggcgagtaa aagtagaata
    11581 aacgtcagac aaaagccgtg cttcaaaaac cgccactttg attttttagg ctgtgttgct
    11641 tgtggctctt gtgctgagtc cgtttgattt gtggctgttt gtttattttc gtcagtcata
    11701 atcgtgcata tttatgaggt gataaaaagt aaacaagcgg tatgcgaaat tttactgaaa
    11761 ttcgaccgct tgttttcatt tacagatcgg aacctaaacc aatataaatt tgtattcctt
    11821 tggaattatc tggtgatttt accggcgtgg cgacatcaaa tttaatcgcc ccgataggtg
    11881 atgcccaacg cacccctaag cccgtaccgt agtagagatc ctgagttttg aatttattcg
    11941 atgccaagcc tgcatcataa aaaattgcac cccaccaatt agggtaaacc tgatactgat
    12001 attctactgt gcctgtggct aaatgagagc ctccgacacg tttgccatta ctcggatcac
    12061 ggggggaaat atccttatag ccaaagcccc gcacactcat atcgccaccg gcaaaatagc
    12121 gtaacgccgg tggaatacgt tcaaattgat tggctttcaa ataccccaac tccgccctta
    12181 aatagaaccg atggttatca aagtaagttc tcgcccaaga tgtcgaggct ttataactat
    12241 aaaagtttac atctgaacct actgcacgac tcccccagtt taccgttaat ttttgtgtat
    12301 ccccccataa tgggtaaggc ttgccatctg ttctggttcg attcaatgat gccgttgggt
    12361 aaactaataa ggttttaaat cgatcattag cttgagtaaa agaatcgtaa cgggctttta
    12421 aaccaacaga aaatgaccaa ccggtttcgt gagtccagaa acgttgtaag ccaagggtgg
    12481 cagcggttga ttttgtatcg ttttgatctt cgttttctaa agtgccggat aattggtaat
    12541 aataatgtag cggatcttct ctaagtggaa tattataacc aaattcaaat gtctgctccg
    12601 gcttagaaac gtacgttcgg ctttcaatac tatgacctcg gctatttaac caaggtttct
    12661 tccagttaag ctgtaacctt gggccaactt cagtttcgta gcctatccca atttccactt
    12721 cattgcgttt tttaggctga aataacacat ttaaatccac taatttatcc tgttcattta
    12781 aatgtggctc aaccatcact gatgaaaacc aattactgga aaggtaatct tgggttaaaa
    12841 tcgaaagatc gttagctaaa tatggctcac cggaatgaat tttaagaata ttttgcaaat
    12901 attcttcttt gatttggcta tcaacaaacc ggatttgtcc ataatggtat cgttttccgc
    12961 tatcatagcc taaacgccaa tccgctttat gatcggtcgg ataaacttcc aaacggtgat
    13021 aaagccaatg accgtcaaaa taccctttac taaaagcggt actttcaata tcacctttaa
    13081 aattatcata ggttttatgg tttaaacgac taccttgttt tggggcttta ctgactagat
    13141 gagcgaaatc ttcgtccgtt tttgcatcgc cttgcaaaac aatatcggtt tcatcaattt
    13201 ttaccgtctc tttatctagc tcaacattta atactaagag cggtttcttt ccctcttgag
    13261 gtagctgcac aaattggtat cggctattat aatagcccaa ggctctcaga gctttatcta
    13321 ctgtggtttg caccaaatat tgataacgct ctgaaccatc tgcatattca ttggcaattt
    13381 gatctaaata tagctccaca tttttcttgg catctttacc ctgaatgcct ttgacttcta
    13441 aagtgactaa tggctctatt tctggctcat catcactatc ttccgctaat ttttcttgca
    13501 gattttcaac tcgctcacga tctacgtcag acagcctttg ctcttgattt gcttgtgcca
    13561 ttgaagcaaa agccactaaa cagcagaatg ttaaaaaatg tagttttgta ttcattagta
    13621 acctttttat tcttttggaa tgccacgcaa aagcggaata ctgtcataag gcggaacaga
    13681 acttaacgct ggctcttgct caaagagcat aatgaatggt ttgtcaggca ctgttttttc
    13741 attacgccac aagtttccaa cactcaccaa ttcaatatct tgaggtagtt gtgctaaatt
    13801 ttgcttcagt acactaatcg tattcttgcg agggtgtcct atcaccaccg ctaccccgtt
    13861 ttttcgtgcg tgattaattg catgtgcaaa ctgtttttgt acatcagcaa gcagatcgct
    13921 atcatctaaa aaaatgtctc tctccagcgt attaatacca aattgacgag ccgttttagc
    13981 cgccacacta ctgccaatag ttttactgtc taaaaagaaa agcgtatttt cttttaacac
    14041 tttcaacaaa tgttgcattg tagcagagtc tgaagttgct ccactgccca tatggttatt
    14101 taaaccaata gcatatggta cttgaccacg agaagtatga ataagtttcc gaattttctc
    14161 ttcgttatca ccaatatgaa tacccccctc ttcaattggc tgtttcgatt taggttccat
    14221 tggcaaatga atcaaaatat cccgtttttg gttataagcg tcctttgccc gttctgttgc
    14281 atagggtgca acaggaataa tcgccacgct taccgccttg ggtaaggcta agatttctcg
    14341 atcttctttt attcgatagc ccacatcatc aattacaatc gccatttgag ctgcttgtac
    14401 aagcggtgta aaaagcacaa acatttgcaa aaaaatgtta aaattcaacc gcttgttaat
    14461 ttgtttaaac atctatttca ccaaatttag aggattaatc ggcgtgcctt tacgggtaac
    14521 accaaaatag agtgcagaac ggctttgtcc cccactgtta ccaaccttcg caataacctg
    14581 tccgccttgc actcggctac ccttgctgac tgaaatagat tggttatagc cataaaggga
    14641 aatatcacca ttgccgtggt caatcgcaac catattgcca taccctgcaa gccattgagc
    14701 cattatgact cgcccgctcg ccattgctct aaccgaagta ccggcagaag caccaatcac
    14761 tacaccgtgc caattattac caaaaggagt gataatattg ccagacaccg gcatcgtata
    14821 tcgaccagcc ttgatcggtg ttctctcaac attctcagtt gttttggact gaccggattt
    14881 tgcctgtttt tcccgctgtt gttcacgttt ttctgcttgc tgagcctctc tttgcgcttg
    14941 ttctaattgt tgttttagtg cctgttcatt gctgcgtaaa ttctctaatc ggctttgatc
    15001 ctgctcaagc gttttatcga ttaaacgtaa ggtactttca cgctggcttt gtactttctt
    15061 taaatctttc tcttgtttct tttgttcatt aagttgcgtt tgatgatctt tttgctggcc
    15121 tttcaattca tcacgtctgg ctttaagatc agcttgggtt ttacgaattt caacgatcgc
    15181 atcaatgcga atattattca tatgctgata ataagcggtc attctttccg cattttttgc
    15241 ctcttcagac attaaacgct ctaagaccga agggttcacc ccagaacggt aggcagagtc
    15301 caactgctct tttaattttt ctttctgctg tttttccaac ttttctaaac gggcaatttc
    15361 agtctcagtc gctttaatgg tctggcgaac ttccgttaaa gacatttcgg ttttttgtaa
    15421 tttatccaac accttcccca tttctacttc ttggtttttt agggtagatt gcaacgcatt
    15481 acgtttttgc ttttgttcat taatttttga ggtttgctgt tggatttttt gctgaatctg
    15541 attaagatta tttgcaaaag aaaaaggggt agaaaagctt attaccccac tgaaaatagc
    15601 agtccaa
//
LOCUS       DANLVT010000052        15591 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.052, whole genome shotgun sequence.
ACCESSION   DANLVT010000052 DANLVT010000000
VERSION     DANLVT010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15591)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15591)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15591
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.052"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            23..619
                     /gene="nfuA"
                     /locus_tag="PXC99_001379"
     CDS             23..619
                     /gene="nfuA"
                     /locus_tag="PXC99_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S biogenesis protein NfuA"
                     /protein_id="HDL5417833.1"
                     /translation="MEEQTIHISISDAAQAHFARLLEQQEEGTNIRIFVVNPGTPGAE
                     CGVSYCPPNAVEETDTEFKFNRFSAFVDDISLPFLDEAEIDYVTDPMGSQLTLKAPNA
                     KMRKVADDAPFIERLDYVIQTQVNPQLASHGGKVTLIEITEDKYAVLQFGGGCNGCSM
                     VDVTLKEGIEKQLLAMFPDELVGVKDITEHQHGEHSYY"
     gene            complement(787..2424)
                     /gene="pyrG"
                     /locus_tag="PXC99_001380"
     CDS             complement(787..2424)
                     /gene="pyrG"
                     /locus_tag="PXC99_001380"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase (glutamine hydrolyzing)"
                     /protein_id="HDL5417834.1"
                     /translation="MTTNYIFVTGGVVSSLGKGIAAASLASILEARGLNVTIMKLDPY
                     INVDPGTMSPTQHGEVFVTEDGAETDLDLGHYERFIRSKMSKANNFTSGKIYSEVLRK
                     ERRGDYLGATIQVIPHITNEIKARVLEGGKGRDVAIVEVGGTVGDIESLPFLEALRQL
                     AVDIGREKTLFMHLTLVPYIPTAGEVKTKPTQHSVKELLSIGIQPDVLICRSDRAIPE
                     NEKKKIALFCNVPERAVISLKDVDSIYRIPELLKSQGLDSFVCDRFRLDCKEADLSEW
                     EQVLYCQANPTGEVTIGMVGKYVELPDAYKSVNEALKHAGLTHRLTVNIKYIDSQDIE
                     TKGTELLAGLDGILVPGGFGYRGVEGKIRTAQYARENKIPYLGICLGMQIALIEYARN
                     VAGLTEANSSEFDKDCSQPVIGLITEWQDAEGNVETRSDESDLGGTMRLGSQQCHLIE
                     GSKARELYGAETIVERHRHRYEVNNKLLPQIEAAGLKVSGLSADRKLVEIIEVPNHPW
                     FIAAQFHPEFTSTPRDGHPLFAGFVKAAKDHQESRKA"
     gene            2688..3737
                     /gene="ansB"
                     /locus_tag="PXC99_001381"
     CDS             2688..3737
                     /gene="ansB"
                     /locus_tag="PXC99_001381"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparaginase 2"
                     /protein_id="HDL5417835.1"
                     /translation="MKIKKLLLPTLLSIATMPIQAADLPNITILATGGTIAGSQKNTA
                     TSAYQAGQLNIETLIEAVPDIKKLANIKGEQIVKIGSQDMSDEVWLKLAKAINQQCPN
                     TDGFVITHGTDTMEETVYFLDMTVKCEKPVVLVGAMRPATEKSADGVLNLYNSVVVAK
                     DSKSSGRGVLVAMNDIVLGARDVTKTSTTSVQTFNSPNFGALGYIHNSKVDYERSPES
                     KHTVNTPFKVDELTELPKVGIIYAYSNMPTEPLQALLDASYQGIVVAGVGNGNMNAAN
                     LALLEEAAKKGITVVRSSRVPTGYTTRDAEIDDSKYGFIASGTLNPQKARVLLQLALT
                     QTNDIKTIQQYFEDF"
     gene            complement(3811..4455)
                     /locus_tag="PXC99_001382"
     CDS             complement(3811..4455)
                     /locus_tag="PXC99_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417836.1"
                     /translation="MRIWQKLASVIVVTLGLISNASAENFKLKYSSNYLMPAYINFNN
                     GGGQYNIQAKINVPLYNIVFSAKGTEKNEQFHMLSYRDTRNGKTYAMAEIDSKTVKYG
                     KVKEPLKEEALTMPTYDLFTTAFQLSYYDKLPSSFQTTNGKKLYPTPNVQLRKAQKEV
                     KVGGKTYQEITYKFRTSDKKDITVKKFEGEKFPRYIAYSRDGDNYELTFDSFVK"
     gene            complement(4456..5439)
                     /gene="cysB"
                     /locus_tag="PXC99_001383"
     CDS             complement(4456..5439)
                     /gene="cysB"
                     /locus_tag="PXC99_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator CysB"
                     /protein_id="HDL5417837.1"
                     /translation="MKLQQLRYIVEIVNQNLNITEAAEVLYTSQPGISKQVRLLESEL
                     GINIFERNGKHVKGLTPAGEKIVAIARELLVKAQSIKSVAEEQTRPNKGILRIATTNT
                     QARYMLPSVIEKFKARYPEVSLHLHQGSPNQIYDALVAGEVDLAITTEAQYLFDEAVL
                     LPCYWWNRSVIVKPEHPLAAFVNQSKNLTVEQLGRYDLITYTFGFTGQSDLDHAFNKE
                     GILPNIVFTATDADVIKTYVRLGLGVGIMASMAHTETDKDLVAINASHLFQPSMTQIA
                     FKRGTFLRNYMYDFINYFSPHLTRVQVEKAEQLRDNNAISRLFESISLEEK"
     gene            complement(5436..6119)
                     /gene="yjjG"
                     /locus_tag="PXC99_001384"
     CDS             complement(5436..6119)
                     /gene="yjjG"
                     /locus_tag="PXC99_001384"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HDL5417838.1"
                     /translation="MKYQWVLFDADETLFSFNSYLGLKAMLARYQIDFSEQDYQDFQA
                     VNKPLWVAYQNNEITAQDIQTRRFVKLSAQTGVDPLQLNQELMAEMAFVSQPLEGVMD
                     MLNALYGKVKMGIITNGFTDLQQKRLDNTQTSHFFDIVVISEQIGAAKPDRQVFDYAF
                     ALMDEFDRTKVLMVGDTLASDILGGNNAGIDTCWLNLLSKENDTDIKPTYEVHTMQQI
                     IAIVEGKSL"
     gene            complement(6195..7088)
                     /locus_tag="PXC99_001385"
     CDS             complement(6195..7088)
                     /locus_tag="PXC99_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GcvA"
                     /protein_id="HDL5417839.1"
                     /translation="MNKKLPPLNALKAFESAARHLNFTKAAEDLFVTQAAVSHQIKLL
                     EDFLGASLFHRRNRLLELTELGAQYFYEVQPLLEQIALATDKIRQQSSRQILTISVPQ
                     TFGMHWLVPRLADFHEKYPEVEVRIKGVDQDEGLLGKETDVAIYYGKGDWQGLESIRL
                     TESRIVILASPEYLSQNTIHLPADLAGKHLLHSSTHNKWKRMVEHLHIEDIVDAETGS
                     IFSHTFMVLQAAMHQQGIAIANQLLAQHEIEKGTLIEPFPTTLFDEKSFYVVYPSQSA
                     QVQKVQFFVEWIQQKMKECCA"
     gene            7534..8571
                     /gene="rsgA"
                     /locus_tag="PXC99_001386"
     CDS             7534..8571
                     /gene="rsgA"
                     /locus_tag="PXC99_001386"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small ribosomal subunit biogenesis GTPase RsgA"
                     /protein_id="HDL5417840.1"
                     /translation="MSKPKLTHNQQRRIQSNHHKRINKKEIEWQDEMLGEMQQGIVVT
                     RHVKHADVETAEGQIFRCNIRRTLKNVVVGDQVSWRKGSEQLQGISGVIEAVFPRKNE
                     LTRPDYYDGIKVMASNIDQIIIVSAVLPTLSLNIIDRYLVICETANIPALIVLNKIDL
                     LNESERQAVKEQLKIYEEIGYETLCLSADTGENMQALHQYLAKGTSIFVGQSGVGKSS
                     LINQLLPEVNALTGSVSDNSGLGQHTTTASRLYHLPQGGQLIDSPGIREFGLWHLEPE
                     QITLGYREFQSVLGTCKFRDCKHKTDPGCALRQEVENGEISAIRFENYHRLIESLSET
                     KSQRHFRKEEV"
     gene            8568..9167
                     /gene="rnhB"
                     /locus_tag="PXC99_001387"
     CDS             8568..9167
                     /gene="rnhB"
                     /locus_tag="PXC99_001387"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HDL5417841.1"
                     /translation="MMNEFIYPNARLIAGVDEVGRGPLVGAVVTAAVILDPNNPIQGL
                     TDSKKLSEKKRQALAEEIKAKALSWSLGRAEPTEIDELNILNATMLAMQRAVAGLHIQ
                     PDFVLIDGNRPPKLPMPAQAVVKGDSLVAEISAASIIAKVARDQEMDELDQQFPQYGF
                     AQHKGYPTKLHFEKLAEFGATPYHRKSFAPVRKVLGLID"
     gene            9180..9539
                     /locus_tag="PXC99_001388"
     CDS             9180..9539
                     /locus_tag="PXC99_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HDL5417842.1"
                     /translation="MTTEYQKTIFTKIINKEIPANIVYQDELVTAFRDIAPQAPTHIL
                     IIPNKFIPTVNHVSNEDELALGRLFTVAAKLAQEEGIAEEGYRLVMNCNKNGGQEVFH
                     IHMHLLGGQKLGPLVAK"
     gene            9542..9913
                     /locus_tag="PXC99_001389"
     CDS             9542..9913
                     /locus_tag="PXC99_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HDL5417843.1"
                     /translation="MRISYFAFAIFSIFLTACGSKPVSYLPTGSEPIVNIESDIAEKI
                     ELETNSKQFSTTNLTEFPLNLTYKLFWYNKDGVTQSHNGISDSIGWQHLWLQPKQKQT
                     IALIKPTEESHNYRLYLRGVK"
     gene            complement(9948..10577)
                     /locus_tag="PXC99_001390"
     CDS             complement(9948..10577)
                     /locus_tag="PXC99_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL5417844.1"
                     /translation="MFNLQIIPVSPFQQNCTVIWDENKNAAIIDGGDNAEGIIQFVES
                     QQLKVQKLLITHGHLDHIMAVEKLREHFQVEVFGSHLADKPLFERLPEMCQQFGLPPV
                     NGFLPDHWLEEGDRVEVGELSYTVRHLPGHAPGHIGFFDFDNRIAFSGDVLFQNSIGR
                     TDLYLGNHSQLLETIREKMFDLDDDFIIIPGHGPHTTIGREKQTNPFLK"
     gene            complement(10594..11148)
                     /locus_tag="PXC99_001391"
     CDS             complement(10594..11148)
                     /locus_tag="PXC99_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbK family protein"
                     /protein_id="HDL5417845.1"
                     /translation="MKQINVQRRKWLSLGGLVLGASLLPGQVMAALSTPAPAALRFRN
                     VNTGDTYTAKFGAGGLNKTDLSQLNYLMRDRHINQVKAIDPKLFVKLNQLQRRLGFHN
                     AEILVLSGYRSAQTNARLRRRSRGVASHSYHILGQAVDFQVSGVPLYKVKQAAESLNN
                     GGVGYYPRSNFVHVDTGPVRTWRG"
     gene            complement(11318..12823)
                     /locus_tag="PXC99_001392"
     CDS             complement(11318..12823)
                     /locus_tag="PXC99_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010129962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HDL5417846.1"
                     /translation="MVAFSGMALAETATVAQVASEPVVQDNILPQLSFAAQQARAAEL
                     VKQADYALEQEQIRQEQARKFAEAEARIKQEIGNNALLLSQATTKVYLDSEFATMWND
                     KAAEKAFLKEYALFAVSGVSSKSAKALQQILNQPEGLGRDILLTDGFLDYLYYNKNVF
                     KNANNWLYNLGSYVPKSPSSEQIFQWTNAVREGDSGQFVTDLVPRNHLYRDTAQRVLA
                     MAGGSSAPKAKKGKAVTEVAGGGNGASFYKLALNAQRLRIIPSFNNGIFVNIPSYQLY
                     YFRDGNLALQSKVIVGREDRRTPVMYSKLSNVVVNPPWNVPTSIMTKDIIPKLARDPG
                     YADRASFEILDSSGNKINPRSVNWSQYLNAKSSPYRIRQKAGDDSALGRYKFNMPSSD
                     AIYLHDTPNRGLFGKTGRALSSGCVRVEKSDELATILLKEAGWGSDKKNQVLGSKKTT
                     SAQIRSDNPVYLYYVTAWVEGGKVQTLPDIYNFDAKIPQHSVNWGKLKSII"
     gene            complement(12941..14953)
                     /gene="prc"
                     /locus_tag="PXC99_001393"
     CDS             complement(12941..14953)
                     /gene="prc"
                     /locus_tag="PXC99_001393"
                     /EC_number="3.4.21.102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy terminal-processing peptidase"
                     /protein_id="HDL5417847.1"
                     /translation="MKLTRLNKIFALALGLMIGNAFAVQPDIKESAIVMPKPNEQHSL
                     STKRVTARLTQSHYHKFQLNDEFAGKIFNRYVDWLDPSHNTFLQADIDEMRSKYATTL
                     DDDLYAGKLDAAFAMYELMSKRRYERYSYALSLLDKEPDLKGNDEIEIDREKAAFPKS
                     VEEANTLWEQRVKNDIINLYLKDKKWPEIKKTLTKRYNFAIKRLTQVKADDILQTYLN
                     SFSREIDPHTSYLSPRAAKAFQESMNLSLEGIGATLTQEDDVTSIRALVPGAPAAKSK
                     KLVVGDKIVGVGQGERGEIEDVIGWRLDNVVDKIKGKKGTKVRLEIEPEKGGKTKIIT
                     LVRDKVRIEDSAAKLTVEKVDGKNVGVIKIPTFYIGLTSDVRKLLTQIEKKNVEGLII
                     DLRENGGGSLTEVIELTGLFIKDGPVVQVQDAFNRIKVHEDPESKSVYDGKVMVMINR
                     HSASASEIFAAAMQDYNRAIIVGQQTFGKGTVQQSRSLNFVYDLDQEPLGFIQYTIQK
                     FYRINGGSTQLKGVEADIKFPEIINAAKTGESFEDNALPWDKIPAANYKEAGNARNAV
                     AALTAKHQERIAKNPEFIVLNENIAIRKERDERKFLSLNLEERLKENKADESKRLKDI
                     NARFAREGKKALKDIDDLPKDYEAPDFFLKEAEQMMLDWSEFDKKS"
     gene            complement(15039..15575)
                     /gene="proQ"
                     /locus_tag="PXC99_001394"
     CDS             complement(15039..15575)
                     /gene="proQ"
                     /locus_tag="PXC99_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone ProQ"
                     /protein_id="HDL5417848.1"
                     /translation="MSEQIEQKVEQTQNKTNPSTKEVIAYLAEKFPLCFTLEGEVKPL
                     KVGLFQELAEALKDDEKISKTLLRQVLRNYTNSWRYLAASQANVARVGLQGEEVGVVT
                     EDEATHAAEALAAAKAVVAERKAQERKAQRKEYFKQKAREENAKKRAEFKAKKAIDNL
                     PKASEEKLAALADKFGRK"
BASE COUNT         4687 a         3337 c         2800 g         4767 t
ORIGIN      
        1 attaaaaaac aggataattt aaatggaaga acaaaccatt catatttcaa tatcagatgc
       61 agcacaagcc cattttgcca gactattaga acagcaagaa gagggaacta atatccgtat
      121 ttttgtggtc aatcccggca caccgggggc agaatgcggt gtctcttact gcccacccaa
      181 tgcagttgaa gagacggata ccgaatttaa atttaaccgt ttctctgcat ttgtcgatga
      241 tattagctta ccgtttttag acgaagcgga aattgattat gtaaccgacc caatgggttc
      301 acaacttacc ctcaaagccc ctaacgccaa aatgcgtaaa gtggctgatg atgcaccgtt
      361 tatcgagcgt ttagattatg tgattcaaac ccaagtcaat ccacaacttg ccagccacgg
      421 cggtaaagtg accttaattg aaatcaccga agataaatat gccgtgctac aattcggcgg
      481 tggttgtaac ggttgctcaa tggtggatgt gaccttaaaa gagggaattg agaaacagct
      541 tctggcaatg ttccctgatg aattagttgg tgtgaaagat attaccgaac accaacacgg
      601 tgaacattct tactattaaa aatactaaaa gggataaatc attgatttat ccctttctta
      661 taattaatga gcaagcggtc aaatttactc gctttcgctc gcacttcgtg ccatcagcaa
      721 agccgatgtt caaacgcaag cgtttgtaca aaaaaatgag taaattcgac cgcttgttaa
      781 gtttgattaa gccttacgac tctcttggtg atctttcgca gctttcacaa aacctgcaaa
      841 taatggatga ccatcacgcg gagttgaggt aaattccgga tggaattgtg ctgctataaa
      901 ccaagggtga tttggcactt caataatttc cactaattta cgatctgccg ataaaccgct
      961 cacttttaag cctgccgctt caatttgtgg taacagctta ttgtttactt cgtaacggtg
     1021 gcgatgacgt tcaacaatcg tttccgcacc atataactca cgagcttttg agccttcaat
     1081 taaatggcat tgttgtgagc ctaaacgcat tgtaccacct aaatctgact catcgctgcg
     1141 ggtttccaca ttcccttccg catcttgcca ttcggtaatt aagccaatca ccggctgtga
     1201 gcaatcttta tcaaattcag aagaatttgc ctcggttaaa cctgccacat tacgggcata
     1261 ttcaattagg gcgatctgca tacctaaaca gatacctaag taaggaatct tgttttcacg
     1321 ggcatattgt gcggttcgaa ttttgccttc cacgccacga tagccaaagc cgcccggcac
     1381 aagaatgccg tctaagcctg ccaataactc tgtgcctttg gtttcaatat cttgtgaatc
     1441 aatgtattta atattcactg ttaaacgatg cgttaaacct gcgtgtttca aagcctcatt
     1501 caccgattta tacgcatcag gtaattccac atattttccg accataccga tagtcacttc
     1561 gccggttggg tttgcttggc agtatagcac ttgttcccac tctgaaagat cggcttcttt
     1621 gcaatctaaa cggaaacgat cgcacacaaa ggaatctaac ccttgcgatt tcaataattc
     1681 cggaatgcga taaatcgaat ctacatcttt aagcgaaata accgcacgct ccggcacatt
     1741 acagaaaagg gcgatttttt tcttctcatt ttccggaata gcacgatctg aacggcaaat
     1801 taacacatcc ggctgaatac cgattgaaag caactctttt actgaatgct gagtcggctt
     1861 agttttcact tcccctgcgg ttggaatata aggcactaag gttaaatgca taaacaaggt
     1921 tttttcacga ccgatatcca ccgctaattg gcggagtgct tctaagaatg gcagtgattc
     1981 aatatccccc accgtgccac ctacttctac aatggcgaca tcacgccctt taccgccttc
     2041 taacacacgg gctttaatct cgttggtaat atgcggaata acctgaatgg ttgcacctaa
     2101 atagtcgcca cggcgttctt tacgcaacac ttcagagtaa attttaccgc tggtaaagtt
     2161 gttggctttg ctcatttttg aacggataaa acgctcgtag tgacctaaat ccaaatcggt
     2221 ttccgcaccg tcttcggtca caaatacctc cccgtgctga gttggactca ttgtacccgg
     2281 atcgacattg atataaggat caagcttcat aatggttaca tttaaaccac gagcttccag
     2341 aatagatgct aaagaggctg ccgcaatacc cttccctaaa gaagatacaa caccgcctgt
     2401 gacgaaaata taattcgttg tcattgtgat tgcctttgct gattgattag gttggaaatt
     2461 cagaatatca gtttacttcg taaaaaagaa actatcagga cgggaaagta gtttacatca
     2521 aattacattt ttttgctaat ggaaaatcgg caagcagtca gattaattct tttttcaata
     2581 atgccgacta atcttaatta atacactatt atttgcgata gatcagaatt aacctacatg
     2641 tttatagata tcataatacc tgtttttcta atactggaga cgatacaatg aaaatcaaaa
     2701 aattactact gccaactctg ttaagcattg ctactatgcc aattcaagca gccgacctac
     2761 ctaatattac aattcttgca actggaggga caattgccgg tagccaaaaa aatacggcaa
     2821 cctcagctta tcaagctggg cagctaaata ttgaaacact catagaagcc gtcccggata
     2881 ttaaaaaatt agcaaatatc aaaggagaac aaatcgttaa aatcggatct caggatatgt
     2941 ctgatgaagt atggctaaaa ctggcaaaag caattaatca acaatgccca aacacagatg
     3001 gcttcgttat tacgcacggc acagacacta tggaggaaac cgtatacttc cttgatatga
     3061 ctgtaaaatg cgaaaaaccc gtagtattag tgggggccat gcgaccagca actgaaaaaa
     3121 gtgccgacgg cgtattaaat ttatataact cagttgttgt cgccaaagat tctaaatcta
     3181 gtggcagagg ggtgttggtt gcaatgaatg atattgtatt gggcgctcgc gatgttacaa
     3241 aaaccagtac tacatcagtg caaacattta actcaccaaa ctttggcgca ctaggctata
     3301 tccataatag caaagttgat tatgagcgct ctcctgaaag taaacacacc gtaaacaccc
     3361 ctttcaaagt agatgaatta acggaattgc caaaagtcgg cattatttat gcttattcaa
     3421 atatgccaac cgaaccgctt caagcattat tagatgcgag ttatcaaggc atcgtggttg
     3481 caggagttgg caatggcaat atgaatgcgg ctaatttggc tttacttgaa gaagcagcta
     3541 aaaaaggaat taccgtggtt cgctcgtctc gagtgccaac cggatatact acccgagatg
     3601 cagaaattga tgatagcaag tatggtttta ttgcttccgg cacattaaat cctcaaaaag
     3661 ctcgagtatt actgcagctc gccttaacac aaacaaatga tataaaaact attcaacaat
     3721 attttgaaga tttctaaaaa gtaaataaca agcggtctat tttgcaaaac aaatcacaaa
     3781 atagaccgct tgtctcatta ctaatcttta ttattttaca aagctatcaa aagttagctc
     3841 ataattgtcg ccatcacgac tataggcgat atagcgaggg aatttttcac cttcaaattt
     3901 tttcaccgta atgtcttttt tatcactggt tctaaacttg taggtaattt cttggtaggt
     3961 tttgccgcct acttttacct ctttttgggc tttgcgtagc tgcacattcg gtgttgggta
     4021 aagtttttta ccgttagtag tttgaaaact gctcggtaat ttatcgtaat agctcaactg
     4081 aaaggctgtg gtgaacaaat cataagttgg catagtcagc gcttcttctt ttagtggctc
     4141 tttcactttg ccatatttta ccgttttaga atcaatttct gccatcgcat aagttttgcc
     4201 gttacgggta tctcggtagc tcaacatatg aaattgttcg tttttttctg ttcccttcgc
     4261 agaaaagaca atattatata aaggcacatt aatttttgcc tgaatattat attggccacc
     4321 accgttatta aagttaatgt aggctggcat taaataattt gagctgtatt tcaacttaaa
     4381 attctccgca ctggcgtttg aaatcaagcc caaagtgacc acgattacgc tcgctaactt
     4441 ctgccaaatt ctcatctatt tctcctctaa agatatactt tcgaacaacc ttgaaattgc
     4501 attgttatct cgtaattgtt ccgctttctc cacttgtacc cgtgttaaat gtggcgaaaa
     4561 ataattaata aaatcataca tatagttacg aagaaaagtt cctcgtttaa aggcgatttg
     4621 cgtcatactc ggttgaaaca ggtgacttgc attgatagcg actaagtctt tatccgtttc
     4681 cgtatgtgcc attgatgcca taataccaac ccctaagcct aagcgtacat aagttttgat
     4741 tacatcagca tctgtcgccg taaatacgat attaggcaaa ataccttcct tattgaaggc
     4801 atgatctaaa tccgattgcc ctgtaaaacc aaaagtatag gttatcaaat catatctacc
     4861 taattgttcg acagtcaaat ttttactttg gttcacaaaa gccgcaagag gatgctctgg
     4921 tttgacaata actgaacgat tccaccaata acacggcaat aaaaccgctt catcaaataa
     4981 atattgagct tctgtggtaa tggctaaatc cacttctcca gccaccaaag catcataaat
     5041 ttgattcggg gagccttggt gcaaatgcaa acttacttca ggatagcgag ccttaaactt
     5101 ctcaattaca ctcggtagca tataacgggc ttgggtattg gtggtcgcaa tgcgtaagat
     5161 gcctttgttg ggtcgagttt gttcttcagc aaccgattta atgctctggg cttttaccaa
     5221 taattcacga gcaatcgcca caattttttc accagcaggc gttagcccct taacgtgctt
     5281 accgttacgc tcaaaaatat taattcccaa ctcactttcc aacaaacgaa cttgtttgct
     5341 aatccccggt tgagaagtgt aaagcacctc tgcggcctcg gtaatattca agttctggtt
     5401 tactatttca acgatataac gtaactgttg tagcttcata atgatttccc ctctacaatc
     5461 gcaataatct gttgcatcgt atgcacttcg taagttggct taatatccgt atcattctct
     5521 ttactaagca aatttaacca acaagtatca attccagcat tattacctcc taaaatatca
     5581 gaagcgaggg tatcgcctac cataagcact ttagtacgat caaattcgtc cattaatgca
     5641 aaagcgtaat caaacacttg gcgatcaggc tttgcggcac caatttgttc tgatatcact
     5701 acaatatcaa aaaaatgtga agtttgagta ttatctaaac gtttttgctg caaatcggta
     5761 aaaccattgg tgataatgcc catttttact ttaccatata aagcatttaa catatccatt
     5821 acaccttcta aaggctgact gacgaatgcc atctccgcca ttaactcttg attaagttgt
     5881 agcggatcta cgcctgtttg agcagataat tttacaaaac gtctggtttg aatatcttga
     5941 gcagtgatct cattattttg gtaagccacc caaagtggtt tatttaccgc ttgaaagtct
     6001 tgataatctt gttcactaaa atcaatttgg taacgagcca gcatcgcttt taaaccaaga
     6061 taagaattaa atgaaaacaa ggtttcatca gcatcaaata atacccattg atatttcata
     6121 atattccttt tttaacttag ataacaagcg gtcaaatttt tctaattttt cgcataccgc
     6181 tgataaagcc acgcttaagc acaacactct ttcatttttt gctgaatcca ctcaacaaaa
     6241 aattgtactt tctgaacttg ggctgattgc gaaggataga caacatagaa cgatttttca
     6301 tcaaacaatg tggttgggaa aggctctatt aaagtacctt tttcaatttc gtgctgtgcc
     6361 aacaactggt tggcaatcgc aatgccttgt tggtgcattg cagcttgaag caccataaaa
     6421 gtatggctaa aaattgagcc agtttccgca tctactatat cttctatatg caaatgttca
     6481 accattcttt tccacttatt atgggtggag gaatgtaata aatgcttacc tgctaaatcc
     6541 gccggtaaat gaatggtatt ttgcgataaa tactcaggcg aagctaaaat aacaatacgg
     6601 gattccgtca aacggataga ttccagacct tgccaatccc ccttaccata ataaatagca
     6661 acatctgttt ctttacctaa taatccctca tcttgatcaa cacccttaat acgtacttcc
     6721 acttctggat atttttcgtg gaaatccgcc aaacgtggga ctaaccaatg cataccaaat
     6781 gtttgtggta cgctaatagt cagaatttga cgactacttt gctgcctaat tttatctgtt
     6841 gcgagagcaa tttgttctaa taatggctga acttcataga aatattgtgc gcctaactca
     6901 gttaattcca gcaaacggtt acggcgatgg aacagggaag cacctaaaaa atcttctaat
     6961 agtttaattt ggtggctcac tgcagcttgt gtgacgaaga gatcttctgc cgctttagta
     7021 aaatttaaat ggcgtgcagc agattcaaat gctttcaatg cattgagtgg tggaagtttt
     7081 ttgttcataa tttttcaatc taatagatta ctaaacaagc aactctatta ttttttctga
     7141 tagtttaaat aaaaaaaatt cgtttgatgc ttgcaaatag aaataataaa atatccgcat
     7201 acttagatgg atagtttaga atttatttct attcctaaat tttaagtatg atgttgtgtt
     7261 tgcatattgg tctaggaaac tagactagag taacgaaagt tacttgtttc acttcctgta
     7321 tattttgaac cgtattggtt tataaccgcc cactttgggc ggtttttttc tatgtaaaaa
     7381 aacagcacaa aacctagatc gcattctata ttattcgcta cctttattct agcctttctg
     7441 cttttttatt ctttcacttt aatctattat aaaaagaggt tttatagtat gctaaagcct
     7501 atttttcatt tgcaataatt accgagagtt cttttgagta aaccgaaatt aacccataac
     7561 caacagcgta gaatccaatc taaccatcat aagcgtatca acaaaaaaga gattgaatgg
     7621 caagatgaaa tgttaggaga aatgcaacag ggcatcgtcg ttactcgcca cgttaaacac
     7681 gctgatgttg aaaccgcaga ggggcaaatt ttccgctgta atatccgccg tacattgaaa
     7741 aatgtagtgg tgggcgatca ggtttcttgg cgtaaaggta gtgagcaact acaagggatt
     7801 agtggggtca ttgaagccgt cttcccacgt aaaaatgaac ttacccgccc cgattattat
     7861 gacggtatta aggtgatggc atcgaacatc gatcaaatca ttattgtatc agctgtgcta
     7921 cctacacttt cgctgaatat tatcgaccgt tatttagtga tttgcgaaac ggcgaatatt
     7981 cctgccttaa tcgtgctaaa caaaattgat ttattaaacg aaagcgaacg gcaagcagtt
     8041 aaagagcagc tcaaaatcta tgaagagatt ggctatgaaa ccctatgttt atcggctgat
     8101 acgggtgaaa atatgcaggc gttacaccaa tatcttgcta aaggtacgtc tatttttgtc
     8161 ggacaatccg gcgtggggaa atccagccta attaaccaac tgttacctga agtcaatgct
     8221 ctcactggct cagtgagcga taactcaggg ttaggtcagc acaccaccac tgcctctcgc
     8281 ttataccatt taccgcaagg cggacagctg attgactcgc cgggcattcg agaatttggc
     8341 ttatggcatt tagaacctga gcaaatcacc ttaggctatc gagaatttca atcggtttta
     8401 ggcacgtgca aattccgtga ttgcaaacac aaaaccgacc cgggttgtgc cttaagacaa
     8461 gaggtcgaaa atggcgaaat ttctgcaatt cggtttgaaa attaccatcg cttaattgaa
     8521 agcctgtctg aaaccaaaag ccaacgccat ttcagaaaag aagaagtata atgaatgaat
     8581 ttatttaccc taacgcccga ttaatcgccg gtgttgacga agtcggacga ggacctttag
     8641 tcggagcggt tgtgaccgca gccgtgattt tagatccgaa taacccgatt cagggcttaa
     8701 ccgattccaa aaaattatcc gagaaaaaac gccaagcttt ggcagaagag attaaagcca
     8761 aggctctgag ctggtcgcta ggacgtgccg agccgacaga aattgatgag ctgaatattt
     8821 taaatgcgac aatgttggca atgcaacgtg cggttgccgg cttgcatatt cagccggatt
     8881 ttgtgctaat tgacggcaat cgtccgccaa aactgccaat gccggcacaa gcggtggtga
     8941 aaggagacag cttagtggct gaaatcagtg ctgcttcgat tattgccaaa gtcgcccgag
     9001 atcaagaaat ggacgaatta gaccaacaat ttccgcaata cggcttcgca cagcacaaag
     9061 gctacccgac taaactccat tttgaaaaat tagcagaatt tggggcaaca ccttatcatc
     9121 gtaagagttt tgcccctgta agaaaagtat taggtttaat cgattagaag gaaaacacaa
     9181 tgactacaga gtaccaaaaa acgattttca ccaaaatcat caataaagaa attccggcaa
     9241 atattgtcta tcaagatgaa cttgtgaccg catttcgtga tattgctcca caagcaccca
     9301 cgcatatttt gattattccg aataaattta ttccaaccgt caatcacgtg agtaatgaag
     9361 atgaattagc cctagggcgt ttatttacgg tggcggcaaa attagcccaa gaagaaggca
     9421 ttgccgaaga aggctatcgc ttagtgatga attgtaataa aaacggcggg caggaagtgt
     9481 tccatattca tatgcacttg ttaggcggac aaaaactagg acctttagtg gcaaaataac
     9541 tatgcgtatt tcctactttg catttgcaat tttttcgatt tttttgaccg cttgtggtag
     9601 caaacctgtc agctatttac caaccggctc agagcctatt gtcaatattg agtctgacat
     9661 tgctgaaaag atagagctgg aaacgaatag caagcaattt agcaccacaa atttaactga
     9721 atttccgctt aatcttactt ataaattatt ttggtataat aaagatgggg taacacaatc
     9781 ccataacggt atatcagata gtatcggctg gcaacatcta tggttgcaac ctaagcaaaa
     9841 acagaccatt gcactcatta aaccgacgga agaaagccat aattaccgcc tctatttacg
     9901 aggcgtaaaa tagcaaaaaa gcagagccaa ctgctctgct tctttattta tttcaaaaac
     9961 gggttggtct gtttttcccg cccgatagtt gtgtgtggac catgtcccgg tatgatgatg
    10021 aaatcatcat ctaaatcaaa cattttttcc ctgatcgttt ccaataactg gctatggttg
    10081 cctaaataga gatctgttcg acctatgcta ttttggaata aaacatcgcc actaaaagca
    10141 atacgattgt caaaatcaaa aaaaccgata tgacccggag catgacccgg caaatgtcga
    10201 acggtatagc tcagctcgcc gacttcgacc cgatcacctt cctccaacca atgatccggc
    10261 aaaaagccat ttactggtgg taatccaaat tgttggcaca tttccggcaa acgttcaaat
    10321 aaaggtttat ctgcaagatg cgagccgaaa acctctactt gaaaatgctc tctcaacttt
    10381 tccaccgcca taatatgatc taaatgaccg tgcgtaatca ataatttctg aaccttaagc
    10441 tgctgagatt caacaaattg aataatgcct tcggcattat cgccgccatc aataatagcc
    10501 gcattcttat tttcgtccca aatcaccgtg caattttgtt gaaatggact aacaggaata
    10561 atttgcaaat taaacataaa ataagaccgc ttgttagcct ctccaagtgc gaactgggcc
    10621 agtatctacg tgaacaaagt tactacgagg ataataacct acgccaccat tattcaagct
    10681 ctcagccgct tgttttactt tatataacgg cacacctgat acttggaaat ctactgcttg
    10741 cccaagaata tggtaactat ggctggcaac accacggctt ctacgacgaa gtcttgcatt
    10801 tgtttgtgcg gagcgatagc cacttaatac taggatttcc gcattatgga aacctaaacg
    10861 gcgttgtaat tgattcaatt tgacaaataa ttttggatca attgctttaa cttgattgat
    10921 atgacgatcc cgcattaaat agtttaactg gcttaaatcg gttttattta atccacctgc
    10981 accaaattta gcagtgtaag tatcgcctgt attcacatta cgaaaacgta acgcagctgg
    11041 ggcaggagta gaaagcgctg ccattacttg acccggcaga aggctagccc ctaaaacaag
    11101 tccgccgagt gatagccact tacggcgttg aacattaatt tgtttcattt tttcctcata
    11161 ggttagctaa tgatttatag aaaatcactc acaaatgagc gaatttctat acaccatact
    11221 taaagtaaaa atttacaatc gtaaatttat gtaagctata ttttcaaaaa gttccaagaa
    11281 gatgatatct tcttggaatt tatcagaaat agcacgatta aataatgctc tttaattttc
    11341 cccaattcac agaatgttgt gggattttgg catcaaagtt ataaatgtcc ggaagggttt
    11401 gcacttttcc accttcaacc caagccgtca cataatagag ataaaccggg ttatctgaac
    11461 gaatctgagc cgaggtcgtc ttcttactgc ctaagacttg attcttttta tcagatcccc
    11521 aacccgcttc ttttaataaa atggttgcca attcatcaga tttttctaca cggacacaac
    11581 cagaacttaa cgcacgcccc gttttaccaa ataatcctct atttggcgta tcatgcaaat
    11641 aaattgcatc cgaacttggc atattaaatt tataacgtcc taaagcgcta tcatcacctg
    11701 ctttctggcg aatacggtat ggtgaacttt tagcatttaa atattgtgac caatttacgc
    11761 tacgcggatt aattttattg ccactactat caagaatttc gaaactagca cgatctgcat
    11821 aacctgggtc acgcgctagt ttaggaataa tatctttagt cataatacta gtcggtacat
    11881 tccaaggtgg attcactacc acattgctca gcttactata cattaccggt gtacggcgat
    11941 cttctcgccc aacaatcact ttagattgaa gagctaaatt accatcacgg aaataatata
    12001 attgatagct tgggatattc acaaaaattc cattgttaaa acttggaata atacgtaaac
    12061 gttgagcatt gagcgctaat ttatagaaag aagccccatt accgccacca gctacctccg
    12121 taacagcttt accttttttg gctttaggtg ctgaagagcc tcctgccatt gccaatactc
    12181 tctgtgccgt atcacgatat aaatggtttc ttggaacaag gtctgttaca aactgcccag
    12241 aatcgccttc cctcacggca ttagtccatt ggaagatttg ctctgaagag ggcgattttg
    12301 gtacataact gcctaagtta tataaccaat tatttgcatt tttaaacaca tttttgttgt
    12361 aatacaaata atctaagaag ccatcagtta ataaaatatc tctacctaaa ccttccggtt
    12421 gatttaagat ttgctgcaat gccttagctg atttagagga taccccactt actgcaaata
    12481 atgcatattc tttcaaaaat gctttttctg cggctttatc attccacatt gtcgcaaatt
    12541 cactgtctaa ataaacctta gttgttgctt ggctcagcaa taaggcatta ttacctattt
    12601 cttgcttaat tcttgcttcc gcttctgcaa attttcttgc ttgctcttga cgaatttgtt
    12661 cctgttctaa cgcataatcg gcctgtttta ccaattctgc agcacgagcc tgctgagctg
    12721 caaaacttaa ttgtggtaaa atattatctt gtacaacagg ctcagaagcc acctgagcaa
    12781 ctgtggctgt ttcagccaaa gccatgccag aaaacgccac cataataggt aataatttaa
    12841 aggttttcac ccactcttcc tcttaatatt tgcaaattta taaaaaaata aaccgcttag
    12901 cggagctaag cggtacgtta tgtgcgcatt ataaacacat ttatgatttt ttatcaaatt
    12961 ctgaccaatc aagcatcatc tgttcagctt cttttaagaa aaagtccggt gcttcatagt
    13021 cttttggtaa atcatcaata tcttttaatg cttttttgcc ttcacgggca aaacgagcat
    13081 taatatcttt taagcgcttg ctttcatctg ctttattttc tttcaggcgt tcttctaaat
    13141 ttaacgataa aaacttacgc tcatcacgtt cttttcgaat cgcaatattc tcgtttaata
    13201 ctataaactc tgggttttta gcaatacgct cttgatgttt cgctgttaat gcagcaaccg
    13261 cgttacgagc attcccagcc tctttataat tagctgctgg aattttatcc caaggaagcg
    13321 cattatcttc aaaactttca cctgtttttg cagcattaat gatttccggg aatttaatat
    13381 ccgcctcaac cccttttagc tgggtacttc caccattgat acggtagaat ttttgaatcg
    13441 tatattggat aaaaccaaga ggctcttgat ccaaatcata tacaaaattc aatgaacggc
    13501 tctgttgaac agttccctta ccaaaggttt gttgccctac aataattgca cggttgtaat
    13561 cttgcattgc cgcagcgaag atttcagagg ctgaagcact atggcgatta atcatcacca
    13621 tcacttttcc atcataaact gattttgatt ctggatcttc gtgtactttg atacgattga
    13681 atgcgtcttg tacttgcact acaggcccat ctttaataaa taaaccagtt aattcaatca
    13741 cttcagttaa cgaaccacca ccgttttcac gtaaatcaat gatcaatcct tcaacatttt
    13801 ttttctctat ttgagtaagt aatttacgta catctgaagt caaaccgata taaaaagtag
    13861 ggatcttaat tacccctaca ttttttccat ctactttttc taccgttaat ttagcagcac
    13921 tatcctcaat acgaacttta tcacgcacaa gggtaataat tttagttttt ccaccttttt
    13981 caggctcaat ttctaaacga actttagtgc cttttttacc tttgatttta tcgactacat
    14041 tatccaaacg ccaaccgata acatcttcaa tctcacctct ctcaccttga cctacaccga
    14101 caattttatc gccgactacc agcttcttac ttttagcggc aggggctcct ggcactaatg
    14161 ctctaatgct ggttacatca tcttcttggg ttagcgttgc accaattcct tctagcgaca
    14221 gattcatgct ctcttggaac gcttttgccg cacgaggaga caaatagcta gtgtggggat
    14281 cgatctcacg agagaatgaa tttaagtaag tttgtaaaat atcatcagcc ttaacttgag
    14341 ttaaacgctt aatcgcaaag ttataacgtt tagtgagtgt tttcttaatt tcaggccatt
    14401 ttttatcttt aagatataaa ttgataatat cgtttttaac tcgctgctcc caaagtgtat
    14461 ttgcctcttc tacacttttt ggaaatgcgg ccttctcacg gtcaatctca atttcatcat
    14521 tcccttttaa gtcaggctct ttatctagta aagataaggc atagctataa cgctcataac
    14581 gacgtttaga cattaactca tacattgcaa atgctgcatc taatttacca gcatataaat
    14641 catcatctaa tgttgtagca tatttactac gcatttcatc aatatcggct tgaagaaaag
    14701 tattatgaga aggatcaagc caatcgacat agcggttaaa aatcttccct gcaaactcat
    14761 cattcagttg aaatttatga taatgcgatt gagttaatcg ggctgttaca cgcttggttg
    14821 ataagctatg ctgctcatta ggttttggca tcacaatcgc actttcttta atgtccggct
    14881 gaacggcaaa agcgtttcct atcattaaac ctagggctag ggcaaaaatt ttatttaatc
    14941 ttgttaattt catcttcttt tccaaataat caagcggtca tttttttgca aaattttact
    15001 aaaatccgac cgcttgtaag cacaaagcga cttgaaaact atttacgacc gaatttatct
    15061 gctaatgcag ctaatttttc ttctgaagct ttaggtaaat tatctattgc ttttttcgcc
    15121 ttaaattctg cacgcttttt cgcattttct tcacgtgctt tctgtttgaa gtactcttta
    15181 cgttgtgctt tacgctcttg tgctttacgt tctgcaacca ccgctttcgc agcagccaaa
    15241 gcttctgcgg cgtgagtagc ttcgtcttct gttaccacgc caacttcttc accctgtaag
    15301 ccgacacgag caacattagc ttggctggca gccaagtaac gccaagaatt agtgtaattc
    15361 cgcaatactt ggcgcaataa cgttttactg attttctcat catcttttaa tgcttcagct
    15421 aattcctgaa acaacccaac tttcaatggt tttacttcac cttcaagcgt gaaacaaagc
    15481 ggaaatttct ccgctaaata agcaatcact tccttggtac ttggattggt tttattctga
    15541 gtttgttcta ctttttgctc aatttgctct gacataataa gtcctattta a
//
LOCUS       DANLVT010000053        15098 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.053, whole genome shotgun sequence.
ACCESSION   DANLVT010000053 DANLVT010000000
VERSION     DANLVT010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15098)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15098)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15098
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.053"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            11..358
                     /locus_tag="PXC99_001395"
     CDS             11..358
                     /locus_tag="PXC99_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417849.1"
                     /translation="MFREEAIEYQSKKWKSTAVLFSRVPALVVFSISFFIFTAFILFI
                     VFGNYTRRETVVGELVMQSHPILLSAPKSGYISENYIQPHQQVKKRAIRWLKLRWIEL
                     RIAKILMLILFFR"
     gene            355..1272
                     /locus_tag="PXC99_001396"
     CDS             355..1272
                     /locus_tag="PXC99_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HDL5417850.1"
                     /translation="MKSQIQATEQAITALYKNKSETINSLEKQIKNSQKIYQDKQSYL
                     VEIEKSMNDYAELVKRYEKLLKVGHSSHDEVNIQKSRYFQQKSLFNELKQELIQLKST
                     QLSLENEIETRKTEFNNQIIRYEMQKSDLNIRLMEFESVSDIIVNASLDGKIESTSVT
                     VGQIIKENDPLAQILPQNKGNYQLVMWVPNSAISFIKQGDEVNIRYEAFPFEKFGQFK
                     GKITSISTLPASLQELSFYKNLPVNLEQGIPLYKILIELADQNVKYNDTSLYFMSGMK
                     AEATLFLEKRKLYEWIFFPMYQLRKNMEQ"
     gene            1272..2063
                     /locus_tag="PXC99_001397"
     CDS             1272..2063
                     /locus_tag="PXC99_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase C39"
                     /protein_id="HDL5417851.1"
                     /translation="MTGIKQLKFDFRRRIPVILQTETAECGLACLAMMLGYYDKNTNL
                     FELRSQYGTSSRGVTLHTLISIANDCGLITRPLSLELDEVPQLRLPCILHWDFNHFVV
                     LTHASEKQFIIHDPAFGKRKLSRAEFSNHFTGVALEVWSEVKFEKSNNENTISLYETL
                     KHISGIKGALVKIFALSMLIELIALLMPIGTQLVMDHVMQAKDQSLLLIICIGLFLFT
                     LFRTMVSMFRAWVSLKMNYLIDFQWTASFFSHLLKLPLDFFENAK"
     gene            2441..3358
                     /locus_tag="PXC99_001398"
                     /pseudo
     CDS             2441..3358
                     /locus_tag="PXC99_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167835.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
     gene            complement(3360..4028)
                     /locus_tag="PXC99_001399"
     CDS             complement(3360..4028)
                     /locus_tag="PXC99_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HDL5417852.1"
                     /translation="MKYLYALIFSLFFSSVYAAERQLQCKVVGISDGDTLTCLVNKTP
                     LKIRLQHIDAPEQAQPYGNKAKQALAQFVFQQNITAIVSGYDRYQRLLATLYLNDKNI
                     NLALVENGMAWAYTTKREYIEAQDQAQQAKIGLWQDKFPINPSQWRKTHTSTLPQAVK
                     KPENIANQPPTIDCQIKLSCNQIGNYAQAKRYFQQCGWKELDGNNDSIPCNKLYRQEQ
                     KNRN"
     gene            complement(4072..5439)
                     /locus_tag="PXC99_001400"
     CDS             complement(4072..5439)
                     /locus_tag="PXC99_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HDL5417853.1"
                     /translation="MSIDTILNQINSFVWGPPLLILISGVGLYLTFSLKGIQLSQLGQ
                     AFRYMFKPEKGKGQSGDISAFAALSTALAATIGTGNIVGVATAIHSGGPGALFWMWLI
                     ALFGMATKYAEGLLAIKYRTKDRAGFVAGGPMYYIELGMGKKWRWLAKAFAFFGVLVA
                     LLGIGTFPQVNGITHALESTFDVPIIFSAIILTLIVTAIILGGVQRISKIATIVVPFM
                     AIGYVIAALSVILLNMEKVPQAIITIVHAAFNPQAALGGAVGFTVMQAIQLGVARGIF
                     SNESGLGSAPIAAAAAQTKEPVRQGLISMTGTFLDTIIVCTMTGLVIVISGAWAGDVK
                     GAELTTTAFTQGLNSSFGAIIVTVGLVFFAFTTILGWCYYGERCFVYLTRGRTQYIKL
                     YRLLFIALIASAPFLQLDTIWTLADIVNGLMAFPNLIALIALRKVIISETKDFFARLK
                     TGKAE"
     regulatory      complement(5558..5653)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            complement(5824..6876)
                     /locus_tag="PXC99_001401"
     CDS             complement(5824..6876)
                     /locus_tag="PXC99_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDL5417854.1"
                     /translation="MTHSTKTLVAIASIIIILAGIKLSNEIVVPFLLSLFIAIICSPM
                     IKFMTKRKVPLWLAITILLIVFILGFSFLAGIINNTLQEFTNAIPQYKIQLSSRIQVI
                     LELAHRWHIPLTLSQEEIMSKFDPSSIMNLVSKLLMGLSGALSNIFVIFLVVIFMLLE
                     MPVAKYKLALALSPDDDLSNEKEYINQVLEGVIGYLGVKTFVSLLTGGLVWILLEILG
                     VEYAILWAILTFLLNYVPNIGSILAGIPIVIQALVLNGFSIGLGTLIGIVVINMVVGN
                     ALEPKLMGKKLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMACKVALESNKATQKYA
                     VLFSDLEEVPKEQKYR"
     gene            complement(6923..7348)
                     /gene="ruvX"
                     /locus_tag="PXC99_001402"
     CDS             complement(6923..7348)
                     /gene="ruvX"
                     /locus_tag="PXC99_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HDL5417855.1"
                     /translation="MTETTTKTVIAFDFGTNSIGCAVGQSITGTAQGLTTFKAQDGIP
                     NWEEIGKLLQDWKPDMLVVGLPLNMDGTEQPLTQRARKFANRLNGRFNLPVELQDERL
                     TTVEAKAEIFSRGGYKALKKDKVDSISACLILESWFENH"
     gene            complement(7348..7908)
                     /locus_tag="PXC99_001403"
     CDS             complement(7348..7908)
                     /locus_tag="PXC99_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HDL5417856.1"
                     /translation="MLENLQGKFLIATPEMDDDYFERTVVYICEHNPQGAMGVVINTP
                     TDLSVLELITRMDFQMANQRDYKKDQMVLSGGPVNQDRGFIIHTKTANDFIHTYPITD
                     KITLTTSGDVLDSFGTLASPEKFIVCLGCSTWRGSQLEQEIAQNYWIVSDANEKTLFE
                     TGYLERWAEAYEMMGLSSIPSRAGRA"
     gene            complement(7908..8639)
                     /gene="rsmE"
                     /locus_tag="PXC99_001404"
     CDS             complement(7908..8639)
                     /gene="rsmE"
                     /locus_tag="PXC99_001404"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HDL5417857.1"
                     /translation="MRIPRIYQPQPLAGLQSCVLSEDAANHVGRVLRMKQGEQIILFD
                     GSNHVFHATLQAVEKKQIIAKIDSSELDDRESNLPIHLGQVISRGDRMEFTIQKSVEL
                     GVKTITPLWSERCGVKLNDERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMKLTDWC
                     KEQDDMLKLNLHPRAKYTIRELPNVPKAGVRLLIGSEGGLSAEEIAMTESEGFTEVLL
                     GKRVLRTETASLAAITALQVCFGDI"
     gene            complement(8699..8989)
                     /locus_tag="PXC99_001405"
     CDS             complement(8699..8989)
                     /locus_tag="PXC99_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5417858.1"
                     /translation="MPKKLHNIYYTEEALIDLENIAISVSEFTGYASSGIRILEELEN
                     SINNLAIFPTMGVKGAIINTRELYHNGYRIVCEVKENEISIITIVHCSRLYP"
     gene            complement(8970..9143)
                     /locus_tag="PXC99_001406"
     CDS             complement(8970..9143)
                     /locus_tag="PXC99_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417859.1"
                     /translation="MNNPYHNVSQEYLDYLAKKVKQGKEDIKNGRIYSPEEVRKRVIA
                     AAFRGAENAKKVA"
     gene            complement(9315..9902)
                     /locus_tag="PXC99_001407"
     CDS             complement(9315..9902)
                     /locus_tag="PXC99_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417860.1"
                     /translation="MKRSKKTLVLATTFVAALLAGCQSQSNTLTFSTPTPTAVFNTNN
                     QTAAVNVMTQDLRTSREIASYTKNGEVIRLTAVPEVAAMFQQAVQQDLNAKGFQIVQG
                     AANANVVVNIRKFFATVEQGNLRYKADAQVSVKVAVQGSKGNFSKNFNATRGYEGAFG
                     ASNDEIKKVLDQAYSDVVKAIYNDNEIANAIHQFK"
     gene            9994..10305
                     /locus_tag="PXC99_001408"
     CDS             9994..10305
                     /locus_tag="PXC99_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA/IbaG family iron-sulfur metabolism protein"
                     /protein_id="HDL5417861.1"
                     /translation="MSVEQTIIQKIKTEFQPIFFNVENESYMHSSGRGAESHFKLTLV
                     SDKFEGQRTVARHRAVYACLAEELANGVHALALHLYTQGEWEATGGLVPKSLNCLGVG
                     Q"
     gene            10397..10486
                     /locus_tag="PXC99_001409"
     tRNA            10397..10486
                     /locus_tag="PXC99_001409"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10431..10433,aa:Ser,seq:gga)
     gene            complement(10662..11036)
                     /locus_tag="PXC99_001410"
     CDS             complement(10662..11036)
                     /locus_tag="PXC99_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein NlpE N-terminal
                     domain-containing protein"
                     /protein_id="HDL5417862.1"
                     /translation="MKKIALIGFTTAMLGACSLLPQKSVSGTYAGELPCADCEKIQAQ
                     LTLNADKTYQYDTVYFKDKKEYTYRDKGTYSWEPNKPNVIRLEKASGNLAFQVSEQHV
                     ELCDPNGNTVKNSNNYKLGKVR"
     gene            complement(11061..11363)
                     /locus_tag="PXC99_001411"
     CDS             complement(11061..11363)
                     /locus_tag="PXC99_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF721 domain-containing protein"
                     /protein_id="HDL5417863.1"
                     /translation="MKNSAPKKINDILQNSSLSRIVEKANFINDLNQKIQKRWPESYR
                     GLYRVVNLVDNQLIVSVKNATVRQGLILQQNMLLKQIQTDLPEITQLEFRVNPSVT"
     gene            11484..11804
                     /locus_tag="PXC99_001412"
     CDS             11484..11804
                     /locus_tag="PXC99_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2547 family protein"
                     /protein_id="HDL5417864.1"
                     /translation="MSLFLKHFHRTPFWSQLFLGMVAILALPEIQVAYANESEQETVL
                     NQSFLQYAQSANDIEQQSLFIAELIHKIVEIKPQAVHFCEFFANSYRLDRQNAYPIRA
                     GPQT"
     gene            11863..14589
                     /gene="secA"
                     /locus_tag="PXC99_001413"
     CDS             11863..14589
                     /gene="secA"
                     /locus_tag="PXC99_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HDL5417865.1"
                     /translation="MISKLLTSIFGSSNDRTLKRLRKRVAQINKLEPTFEQLSDEALK
                     DKTAEFKQRLADGVSLDSLLPEAFATVREASKRVLGMRPFDVQLIGGMVLTGRNIAEM
                     RTGEGKTLTATLSCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGLTVGVNIPG
                     LPSDAKRAAYQADITYSTNSELGFDYLRDNLAHDKNERFQRELHYALVDEVDSILIDE
                     ARTPLIISGPAEDATQIYQAVDQIIPHLIAQDKEDSEEYTGEGDFTLDLKNKQAHLTE
                     RGMVKVEDFLTQMGLMEEGESLYHPARISLLHHVSAALRAHKLFERNVDYIVKDGEIV
                     IIDEHTGRTMAGRRWSDGLHQAIEAKERVAIQGENQTVASITYQNYFRLYEKLAGMTG
                     TADTEAFEFQQIYGLNTVVIPTNRPVIRDDRTDLMFKSEAEKFAAIITEIRDCIERKQ
                     PVLVGTASVEKSELLSAELTKAGIAHNVLNAKFHAQEAEIVAEAGAPGAVTIATNMAG
                     RGTDIVLGGNWKMEVAKLENPTQEQIDAIKAAWQERYDIVMQAGGLHIIGTERHESRR
                     IDNQLRGRSGRQGDPGSSRFYLSLDDALMRIYLNEGKLNMMRKAFTEEGEAMESKLLT
                     KVIASAQAKVEAHNFDGRKHLLQYDDVANEQRKVIYEQRNHLLETDNIASMIESIRQD
                     VFESTINQYIPPQSIEEMWNVPGLEERLRREFGLDLPISHWLETEKDLHEETLRERIL
                     NIAIAEYNAKEEIVGAEVMRNFEKGVMLQNLDELWKEHLASMDYLRKGIHLRGYAQKD
                     PKQEYKKESFAMFTNMLDTLKLNVISILSRIQVRSKEEVEEAQRQQAEMDAASTPVTQ
                     ATDSAAGSREENSAESLSEEELANLNIGRNDPCPCGSGKKYKHCHGNKARYS"
     gene            14676..15074
                     /gene="mutT"
                     /locus_tag="PXC99_001414"
     CDS             14676..15074
                     /gene="mutT"
                     /locus_tag="PXC99_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase MutT"
                     /protein_id="HDL5417866.1"
                     /translation="MSKPIIQVSAGIIRNEFGQIYLTQRLEGQDFAQSLEFPGGKVDP
                     NETPEEALKRELEEEIGIQVLSAFPYENFCFEYPTKIIEFFFYLVEEWVNEPYGREGQ
                     EGFWIAQSDLDEGAFPPANAQLIKRLKEHA"
BASE COUNT         4533 a         2830 c         3062 g         4673 t
ORIGIN      
        1 ttggtattat atgttcagag aagaagctat tgaatatcaa tcgaaaaaat ggaaaagcac
       61 agctgtacta tttagcagag ttccagcttt ggttgtcttt tccatttctt tctttatctt
      121 tactgccttt attctattta ttgtgtttgg taattatacc cgccgtgaaa cggttgtggg
      181 tgaattagtg atgcaatctc atccgatttt attatctgcc ccaaaatccg gctatatatc
      241 cgaaaattat attcaaccac atcagcaggt aaaaaaaagg gcgatccgct ggttaaaatt
      301 acgctggata gaattacgca tagcgaaaat attaatgtta attctattct ttcgttgaaa
      361 tcacaaattc aagcaacaga acaagcgata actgctttat ataagaataa atcagaaact
      421 attaatagcc ttgaaaagca gatcaaaaac agtcaaaaaa tttatcaaga taagcagagt
      481 tatttagtgg aaattgaaaa aagtatgaat gactatgcgg agttggttaa acgctatgag
      541 aaattattaa aagtagggca ttccagccac gatgaagtga atattcagaa aagccgttat
      601 ttccaacaaa aatcactgtt taatgagcta aagcaagaat taattcaatt aaaatccacc
      661 caacttagct tggaaaatga aattgaaacc cgtaaaaccg aatttaataa tcagattatt
      721 cgctatgaaa tgcaaaaaag cgatttaaac attcgtttaa tggaatttga atctgtttca
      781 gatattattg ttaatgcctc tttagatgga aaaattgaaa gtaccagcgt aacagttggg
      841 caaattatta aagaaaatga cccgcttgca caaattctgc cacagaataa aggaaattat
      901 cagctagtga tgtgggtacc gaatagtgcc atttcattta ttaaacaagg cgatgaggtg
      961 aatattcgct atgaggcttt tccgtttgaa aaattcgggc agtttaaggg caaaattacg
     1021 tcaatttcaa ccttaccagc ttctttgcaa gaacttagtt tttataaaaa tctccctgta
     1081 aatttagagc aaggtattcc gctttataaa attctgattg agcttgccga tcaaaacgta
     1141 aaatataatg atacctccct ttattttatg agtggaatga aagccgaagc cacgttattt
     1201 ttagaaaaac gtaaactgta tgagtggata tttttcccta tgtatcaatt acgcaaaaat
     1261 atggagcaat aatgacagga attaagcagt taaaatttga ttttcggaga agaatacctg
     1321 ttattttgca aactgaaaca gctgaatgtg gcttagcctg tttagcgatg atgttgggct
     1381 attacgataa aaacaccaat ttatttgaat tgcgaagtca atatggtact tcctctcgtg
     1441 gcgtaacgct gcatacttta atttctattg caaatgactg tggtttaata actcgccctc
     1501 tttctctaga gttagatgaa gtaccacaac ttcgtctgcc ttgtattctt cattgggatt
     1561 ttaatcattt tgtagtatta actcacgcaa gtgaaaaaca gtttattatc cacgatcctg
     1621 ctttcggtaa acgtaaatta tcccgtgctg aattttccaa ccattttacc ggagtcgctt
     1681 tagaagtttg gtctgaagtt aaatttgaga aaagcaacaa tgaaaatacc attagtttgt
     1741 atgaaacctt aaagcatatt tctggcataa aaggtgcatt agtgaaaatt tttgcccttt
     1801 caatgctcat tgaactcatt gccttattga tgccaattgg aacacagtta gtgatggatc
     1861 acgttatgca agcgaaagat caatcattac ttttaattat ctgtattggg ctatttttat
     1921 ttaccctttt tcgcacaatg gtcagtatgt ttagggcttg ggtttccttg aaaatgaatt
     1981 atttaattga ttttcaatgg acagccagtt tcttttctca tctcttaaaa ttaccgcttg
     2041 atttctttga aaacgccaag taggtgatat tcattcccga tttagttcat taaaaaccat
     2101 tcagaaaact ctaacttcaa gcattattac cacgattatt gatacgatta tgataatcag
     2161 tttaattatt atgatggtgt tatatggcgg ttggctcttt tgggtagtat tagctttttc
     2221 ctttatctat tttattcttc gaatggttac ttatttagtt tatcgtcaac tgaatgaaga
     2281 gcagattatt aaaggagcaa aagcccattc gcattttatg gaaactttat atggtattac
     2341 aacgttaaaa tcattaggat tggaaaataa acgacaagaa cagtggatgt cgctcaatgc
     2401 ggatgctttt aacacatcaa ttaaggtaac taaatttgat atgctgtttt ccggtattca
     2461 tacctttatt tctaccatcg aacagatttt aattctttgg attggggcga caatgatgat
     2521 tgaaaatgtg atgacattag gaatgtttgt cgcttttaat gcctatcgag gctctttctc
     2581 ttcacgaatg gggaatttaa ttgatattat ttttagccta aaaattcttt cattacatag
     2641 agagcggatt gcagacattg ctttaaatga agtcgaagat gaaagtaaat atcaagaact
     2701 cagatttgaa cataaccaaa cagatataga agttaaagac ctttgtttca aatacgatcc
     2761 tttttctaaa aatgtgcttg aaaatgtcaa tttagtgatc agaagtgggg aaagtgttgc
     2821 tattaccgca ccatcaggtt atggcaaaac aacgttatta aaattaattg caggtttatt
     2881 aaaaccaacc tcaggttctg tgtattttaa cggcattgat atttatcagt taggattaag
     2941 tcaatatcgg agccaaattg cttgcgtatt acaggaagat aaattctttt ctggttccat
     3001 tttagagaat attgttagtt ttgaaagtaa ttatgatcga gaatgggcta tcgaatgtag
     3061 caaacttgcg aatattcaca atgatattat ggcaatgccg atgaattatg aaaccttatt
     3121 aggagaatta ggaaataatt tgtctggcgg acaaagataa cgattgttta ttgctcgagc
     3181 tttatataaa aagcctaaaa ttcttttgat ggatgaggcg actagccatt tagatgaaga
     3241 aaatgagaag cttgtcaatc aagctatttc acgaatgaag ataacaagga ttattattgc
     3301 tcatagacaa tcgactattc agtcggcgga tagaattatt gccctgaatg acaggtaaat
     3361 taattcctat ttttctgttc ttgccgataa agtttattgc acggaatgct gtcgttgttg
     3421 ccgtctagct ctttccagcc gcattgttga aagtagcgtt ttgcctgtgc gtaattgccg
     3481 atttggttgc agcttaattt aatttggcaa tcaatcgttg gtggctggtt tgcaatattt
     3541 tccggttttt tgaccgcttg tggtaaggtt gaggtgtgtg tttttcgcca ttggctcggg
     3601 ttaatcggga atttgtcctg ccataagccg attttagctt gctgtgcttg atcttgtgct
     3661 tcgatatatt cccgctttgt ggtgtaagcc cacgccatac cgttttccac taaggctaag
     3721 ttgatgtttt tatcgtttaa gtagagggtg gcaagtaatc gttggtaacg atcatagcct
     3781 gaaactatgg cagtaatgtt ttgttgaaac acgaattgag ccagagcttg tttggctttg
     3841 ttgccgtaag gctgcgcttg ttcgggggca tcaatatgtt gtagccttat ttttagtggt
     3901 gttttattga ccaaacaagt gagggtgtcg ccatcgctaa tgccaacgac tttgcattgt
     3961 agttggcgtt cggcggcata taccgatgag aaaaataagc taaaaatcag ggcgtaaaga
     4021 tatttcatta ttaaaaaaga gagggctaat aagccctcat tctatcattt tttattcggc
     4081 tttacctgtt ttaaggcgag cgaagaaatc ttttgtttca ctaataatca ctttgcgtaa
     4141 cgcaatcaat gcgattaaat tcgggaatgc cattaagccg ttcacgatgt ctgccagcgt
     4201 ccaaattgta tcgagttgta aaaatggagc agaggcgatg agtgcaataa acagcaagcg
     4261 gtataattta atgtattggg tgcgacctcg agtgagatag acaaaacagc gttcaccgta
     4321 gtagcaccag cctaaaatgg tggtaaaggc aaagaagact aaaccaactg tcacaattat
     4381 cgcaccgaat gagctgttta aaccttgagt aaaagcggtt gtggtgagtt ctgcgccttt
     4441 tacatcgcct gcccaagccc ctgaaatcac aattactaag ccggtcattg tgcagacgat
     4501 aatagtgtct aagaacgtgc cggtcattga aattaggcct tgacgtaccg gctctttggt
     4561 ttgggcggca gcggcggcga tgggggcaga gcctaatcct gattcattcg agaaaatacc
     4621 acgtgcaacc cctaattgaa tcgcttgcat gacggtgaat ccgactgctc cgcctaatgc
     4681 cgcttgtggg ttgaaagctg cgtgtacaat agtaataatt gcttgtggga ctttttccat
     4741 attcagtaga atgacggata aagcggcgat gacataccca atagccataa acggtacaac
     4801 aatggttgca attttagaaa tccgctgcac gccacctaaa ataatagcgg taacgataag
     4861 ggttaaaatg atcgcactga agataatcgg cacatcaaag gtgctttcta aggcgtgggt
     4921 aatgccattc acttggggga acgtgccaat accaagcaaa gcgaccaata cgccaaaaaa
     4981 cgcaaaggct ttagcaagcc aacgccattt ttttcccatt cccagttcga tatagtacat
     5041 cggaccacca gccacaaatc cggctctatc tttagttcga tatttaattg ccaataagcc
     5101 ttcggcatat ttcgtagcca taccgaataa ggcaatcagc cacatccaaa ataatgctcc
     5161 aggcccgccc gaatgaatag cggttgccac gccgacaata ttccccgtgc cgatagtagc
     5221 tgctagggca gtggaaaggg ctgcaaaagc ggaaatatcg cccgattgcc ctttgccttt
     5281 ttccggtttg aacatatagc gaaaggcttg ccctagttgg cttaattgaa tacctttgag
     5341 tgaaaaggtt aaatataacc ctacgcctga aattaaaatc aggagtggcg ggccccaaac
     5401 aaaactgttg atttgattaa gaatagtgtc gatagacatt tgatgttcct cgtaaaaact
     5461 gcttacaagg aaagaaaagg aatgcaagag acaagcggtc aaaaaacgga aattttttgc
     5521 aaagaattag caaaaaaaca ccgcttgtat cgtataactt ttctcccctg tccttttgcc
     5581 tgagcgtttc acacattgct gtattttcgc cttcggcggc ggattttaat ccgctctctc
     5641 caagggttcg tccagtaaca gtccccgcag tgttcactgc acctgaaaga gtttacctcg
     5701 tcggtgaaat gttaattcat ttctctccag ctaccttcat ccgaacaatc taatttattt
     5761 tataatgtaa aataaaaaag atttgccaaa ttctagcaac tcttttgctt ccgtcaagtg
     5821 aatttaacga tatttttgtt ctttcggtac ttcttctaaa tcgctaaata atacggcata
     5881 tttttgggtg gctttattgg attctaatgc cactttacac gccatcgtaa gtggaacaga
     5941 aagtaacatt cctacggtgc caagtaacca cccccaaaat agaagtgaga ggaacactac
     6001 aagggtagaa agcccgagtt tcttgcccat taatttaggt tcaagcgcat tacccacaac
     6061 catattaatc acgacaatgc cgattaaagt gcctaatcct atagaaaagc cattgagtac
     6121 caaggcttga atcacaattg gaattcccgc caaaatagag ccgatattcg ggacgtagtt
     6181 aagcaggaag gttagaattg cccataaaat cgcatattct acgcctagaa tttctagtaa
     6241 gatccaaact aaccctccgg tgagtaggct cacaaaggtt ttaactccaa ggtaaccaat
     6301 caccccttca agtacttggt tgatatactc tttttcgttg cttaaatcat catctgggct
     6361 aagtgcgagg gctaatttat atttggcaac cggcatttcc aatagcataa aaatgacgac
     6421 taagaaaatc acaaaaatat tcgataatgc accggatagc cccattagca gtttgctgac
     6481 caaattcatt attgagcttg ggtcaaattt gctcataatc tcttcttgtg agagggtaag
     6541 tggaatatgc catctatggg cgagttctag aatcacctgg attctagatg aaagctgaat
     6601 tttgtattgc ggaatagcat tagtaaattc ttgcaaggtg ttattaataa tgcctgctaa
     6661 gaaactgaat cctaagataa aaacaataag taaaatggta atggctaacc ataatggcac
     6721 tttacgctta gtcataaatt tgatcattgg tgaacaaata atggcaataa atagcgaaag
     6781 taaaaatggc acaacaattt cattggataa tttaatccct gccagaataa tgataatgga
     6841 ggctatcgcc acgagagttt tggtggaatg tgtcataatt tttcctttta caagcggtta
     6901 aaaatcagca attttttaca aattagtgat tctcaaacca actttctaaa attaaacaag
     6961 cggaaatgga atccacttta tcctttttta atgctttgta accaccacga gaaaaaattt
     7021 ccgcttttgc ttcaacagta gtgaggcgtt catcttgtag ctcaaccggc agattaaagc
     7081 gtccgtttaa gcgattggca aattttctgg cacgctgagt taaaggctgc tctgtgccgt
     7141 ccatattcaa gggtagccca acaaccagca tatctggttt ccaatcttgc aagagttttc
     7201 cgatctcttc ccagtttgga ataccgtctt gggctttaaa tgtagttaaa ccttgagctg
     7261 tgccggtaat actttgtcca actgcacagc cgatgctatt tgtgccaaaa tcaaaggcaa
     7321 tcacggtttt tgttgtggtt tctgtcatta agctctccca gctcttgacg gtatgcttga
     7381 aagccccatc atttcatagg cttctgccca acgctctaaa taaccggttt caaacagcgt
     7441 tttttcattc gcatcagaca caatccaata attttgagca atttcttgct caagctggct
     7501 gccacgccaa gtggaacaac ctaaacacac aataaatttt tcaggtgaag ccagtgtgcc
     7561 aaaggagtct aacacatcac cggaggtagt gagcgtaatt ttatcggtga tcggataagt
     7621 gtgaataaaa tcattggcgg ttttggtgtg aataataaag ccacgatctt gatttaccgg
     7681 cccaccgctt aacaccattt ggtctttttt gtaatcacgc tggttcgcca tttggaaatc
     7741 cattcgggta atcagctcta gaaccgacag atcggtagga gtgttaatta ctactcccat
     7801 tgcaccttgc ggattatgtt cgcaaatata gaccaccgta cgctcgaaat agtcatcgtc
     7861 catttccggc gtggcaatta aaaatttacc ttgtaaattc tctaacatta aatatctcca
     7921 aaacaaactt gtaacgcagt aattgccgca agtgaggcgg tttctgtgcg taacactcgt
     7981 ttacccagta atacttcagt aaaaccttcg ctctcggtca tggcgatttc ttcggcagat
     8041 aatccgccct cagagccaat cagtaaacga acaccagctt tcggcacatt cggcagttca
     8101 cgaatggtat atttggctct tgggtgcaaa ttcagtttca acatatcgtc ttgttctttg
     8161 caccagtcgg tgagtttcat aatcgggcga atttcaggga tttcatttcg tccgcattgt
     8221 tcacaggcgg caatcgcaat tttctgccat tgctgtaatt ttttatcttg ccgttcatca
     8281 ttgagtttca cgccacaacg ttccgaccaa agtggggtaa tagtttttac ccccagctcc
     8341 accgattttt gaatggtaaa ttccattcta tcgcctcggg aaatcacttg ccctaaatgg
     8401 atcggcaggt tggattctcg gtcatctaat tcacttgaat caatttttgc aataatttgc
     8461 tttttttcga ccgcttgtaa cgtagcgtgg aaaacgtggt ttgaaccatc aaataaaatg
     8521 atttgctctc cttgtttcat tcgtagcact cgcccaacgt ggttagcggc atcttcactt
     8581 aacacgcaac tttgaagacc agctaacggc tgtggttggt aaattcttgg gattctcata
     8641 attatctagt tataaattaa aggcagacga ttgtctgcca taggtaagtt aaaacgggtt
     8701 aaggataaag tcttgaacaa tgcacaatag taataatcga aatttcattc tctttaactt
     8761 cacacactat tctatagccg ttatgatata gttctctcgt attaataatt gcacctttta
     8821 cacccattgt aggaaaaatg gctaaattat taatactatt ttccaattct tctagtatcc
     8881 taattccact acttgcataa ccggtaaatt cactaactga gatggcaata ttctctaaat
     8941 ctattaaggc ctcttcagta taataaatat tatgcaactt ttttggcatt ttcagcacct
     9001 ctaaaagcgg cagcaataac tctttttctg acctcttcgg gtgaataaat ccgaccgttt
     9061 ttaatatctt cctttccttg ctttactttt ttagcaagat aatcaagata ttcttggcta
     9121 acattatgat aaggattatt catatttttc ctccctgcga tgagtctcta ttgtgggggc
     9181 tactgatcgt ttaatcaagt taatttatct tatttttcga gccacatcac aaaacgagaa
     9241 aacaacaagc ggtcattttt ccacgttttt tgcaaaaaat cgaagaaaga tgaccgcttg
     9301 ccagaaaaaa ttaattattt gaactggtga attgcattgg cgatttcatt atcgttgtaa
     9361 atagctttca ccacatcaga ataggcttgg tctaacactt tcttgatttc atcattgctt
     9421 gcaccaaatg caccttcgta accacgggta gcgttgaagt ttttgctaaa gtttccttta
     9481 gaaccttgca ctgccacttt tacactcact tgtgcatcgg ctttgtagcg taagtttcct
     9541 tgttctactg tggcaaagaa tttacgaata ttcactacca cattggcatt cgctgcacct
     9601 tgtacaattt ggaaaccttt tgcattcagg tcttgttgga cggcttgttg gaacattgca
     9661 gcaacttcag gcactgcggt taaacgaatg acctctccgt ttttagtgta gcttgcgatt
     9721 tcacgcgagg tgcgtaaatc ttgtgtcatt acattcaccg cagccgtttg attgtttgtg
     9781 ttaaatacag cagttggcgt tggggtagag aatgttaatg tgttggattg gctttggcag
     9841 ccggctagta atgcggcaac aaaagtagtg gctaacacta acgttttttt agagcgtttc
     9901 atagtaaatc cttctatatt gaataaattt cgagaaaatt tctgcttagt atagtattat
     9961 ttcgttttga ttttcaatga acgagagcaa aaaatgtcgg tagaacagac aattattcaa
    10021 aaaattaaga cagaatttca gccgattttc tttaatgtcg aaaacgaaag ctatatgcac
    10081 agctcaggta gaggagcaga atcgcatttt aaattaactt tggtgtcaga taaatttgaa
    10141 gggcagagaa cagttgcacg tcatcgtgct gtctatgctt gcttagctga ggaattagct
    10201 aatggcgttc acgcacttgc tttgcaccta tatacccaag gtgaatggga agcgactggc
    10261 ggacttgtac ctaaatcgct aaattgctta ggtgttgggc aataagtgga taaaaatgat
    10321 ttattttatt ttgtgaagaa aatacttgaa agagccgtgt aaaattgcta tatttacgcc
    10381 atctttttgt tgattcggtg agatgtccga gtggttgaag gagcacgcct ggaaagcgtg
    10441 tatatgggaa actgtatcgg gggttcgaat ccccctctca ccgccattca tactgaaaga
    10501 ttccttactg ttttcataga tatttccttg gttaagttaa agtagataat actttttcat
    10561 ttttaggtta tccccgagca aacattgctt gggggttttt ttatgcgatc ggcgatagat
    10621 tacaaagaaa aaggattcct aagaatcctt tttatctgct tttaacgtac tttacctagt
    10681 ttatagttat tgctgttttt taccgtgttg ccatttgggt cgcaaagttc aacgtgttgt
    10741 tcagacactt ggaaggcaag attgcctgat gctttttcca gacgaatcac atttggctta
    10801 ttgggttccc aactgtatgt gcctttgtct cggtaagtgt attctttttt atctttaaaa
    10861 tataccgtat catattggta ggttttatct gcatttaagg ttagctgggc ttggattttc
    10921 tcacagtcag cacacggtaa ttcacctgca taagtaccgc taacgctttt ttgtggtagc
    10981 aatgagcaag cccctagcat tgcggtggta aaaccaatga gtgcgatttt tttcatacta
    11041 ttttcctctt caaaattaaa ttatgtaaca ctcggattta ctctaaattc aagttgggtt
    11101 atttcaggta aatcggtttg tatctgtttt agtaacatat tttgttgcaa gattaaacct
    11161 tgccgtacgg ttgcattctt aacgctcaca ataagctgat tatcaactaa attcactact
    11221 cggtaaagcc cacgataaga ttctggccat cttttctgaa ttttttggtt taaatcgtta
    11281 atgaagtttg ctttttcgac aatacggctt aagcttgagt tctgtaaaat gtcattaatc
    11341 tttttaggtg ctgaattttt catctgtttc tttacatttc gtcttatttt aggcttgatt
    11401 ttacgatact tgacccaata atttactcat tcggctttac tttagcgtat aattagccca
    11461 attttttcat ttatcttaat ttaatgagct tatttttaaa acactttcat cgaacgcctt
    11521 tttggtcgca actctttttg ggaatggttg cgatacttgc tttacctgaa attcaggttg
    11581 cgtacgccaa tgaaagtgaa caggaaaccg ttcttaatca atcttttctt caatatgctc
    11641 aatccgctaa tgatattgag caacaatcgc tttttattgc agagttaatc cataaaattg
    11701 tggaaattaa accacaagcg gtgcattttt gcgaattttt tgcaaactcc taccgcttgg
    11761 atagacaaaa tgcttacccc attcgagccg ggccacaaac ctaaatataa tttaatttta
    11821 ccattaattg attaacccat ttttatattt aggaataaca caatgatttc aaaattactg
    11881 acttctattt ttggctcaag caacgatcgc actttaaaac gtttaagaaa gcgagtggca
    11941 caaattaata agcttgaacc aaccttcgag caattatctg atgaggcgtt aaaggataaa
    12001 acagcggagt ttaagcaacg ccttgcagat ggtgtatcgc tagatagcct attacctgaa
    12061 gcttttgcga cagtgagaga agcaagcaaa cgagtattag gtatgcgacc atttgatgta
    12121 cagctgatcg gcggtatggt gctaacgggg cgtaatattg cagaaatgcg tactggggaa
    12181 ggtaaaaccc taactgcaac tttatcttgt tatttgaatg ctttgaccgg taaaggtgtt
    12241 catgttgtta cggtgaatga ttacctcgcc cgccgtgatg cggaaaccaa ccgtccgtta
    12301 tttgagtttt taggcttaac cgttggagtg aatattccgg ggttaccttc cgatgcaaaa
    12361 cgtgctgcat accaagcaga tattacctat tcgactaaca gcgaattagg ttttgattac
    12421 ttgcgtgata acttagctca cgataaaaac gaacgtttcc aacgtgagtt acactacgca
    12481 ttagttgatg aagtagactc tattttaatt gatgaagctc gtacgccgtt aattatttca
    12541 gggcctgcgg aagatgcgac ccaaatttat caagcggtag atcaaatcat tccgcatttg
    12601 attgctcaag ataaagaaga cagtgaagag tacaccggtg agggcgattt taccttagat
    12661 ctgaaaaaca aacaggctca tttaaccgag cgtggtatgg tgaaagtaga ggatttctta
    12721 actcaaatgg ggttaatgga agagggcgaa agtttatatc accctgctcg tatttcgctg
    12781 ttacaccatg tgagtgcagc attgcgtgcc cataaattat ttgaacgcaa cgtagattac
    12841 attgtaaaag acggtgaaat tgtgattatt gatgagcaca ccggtcgtac aatggctgga
    12901 cgtcgttggt ctgacggctt acaccaagcg attgaagcta aagagcgtgt ggctattcag
    12961 ggcgaaaacc aaactgttgc ctcaattact taccaaaact atttccgttt gtacgaaaaa
    13021 ttagccggta tgactggtac ggcagacacc gaagcctttg aattccagca aatttatggc
    13081 ttaaatacgg tggtgattcc aaccaacaga ccggtgatcc gtgatgaccg tacagactta
    13141 atgtttaaaa gcgaagcgga gaaatttgcg gcgattatta ctgaaattag agactgtatc
    13201 gagcgtaaac agcctgtttt ggttggcaca gcatcggtgg aaaaatcaga gttattatcg
    13261 gcagaattaa ccaaagccgg tattgctcat aacgtattaa atgcgaaatt ccacgctcaa
    13321 gaggctgaaa ttgtagcgga agcgggagct ccgggggcgg ttactatcgc aaccaatatg
    13381 gctggtcgtg gtacggatat tgtgcttggc ggtaactgga aaatggaagt agccaagctt
    13441 gagaacccga cacaagaaca aattgatgcg attaaagctg cgtggcaaga gcgttatgac
    13501 atcgtaatgc aagccggtgg tttacatatt attggtacag aacgccacga atcccgccgt
    13561 atcgacaacc agttgcgagg tcgttctggt cgtcaaggtg acccggggtc atcacgtttc
    13621 tatctctctt tagatgatgc cctaatgaga atttacctca atgaaggtaa attaaatatg
    13681 atgcgtaaag cctttaccga agaaggtgaa gcgatggagt ctaaactgtt aaccaaagtg
    13741 attgcctctg cacaggcgaa agtagaagcg cataactttg atgggcgtaa gcatttatta
    13801 caatatgatg atgttgccaa tgaacagcgt aaagtaattt acgaacaacg caatcatcta
    13861 ttagaaacag ataatattgc ctcaatgatc gaaagcattc gccaagatgt atttgaaagc
    13921 acgattaacc aatatattcc gcctcaatct atcgaggaaa tgtggaatgt gccgggctta
    13981 gaagagcgtt tacgccgtga atttgggttg gatttaccga tttctcactg gcttgaaact
    14041 gaaaaagact tgcacgaaga gactttgcgt gaacgtatct taaatattgc gattgcagag
    14101 tacaatgcga aggaagaaat agtaggcgca gaggtaatgc gtaattttga aaaaggtgta
    14161 atgctacaaa acttagatga gctttggaaa gagcatctag cctcaatgga ttatttacgc
    14221 aaaggtattc acttgcgtgg ttatgcacaa aaagatccga agcaagagta taaaaaggaa
    14281 tcttttgcga tgtttaccaa tatgcttgat accttaaaat tgaatgtaat tagcatttta
    14341 agccgtattc aagtgcgtag caaagaagag gtggaagaag cgcaacgcca gcaagctgaa
    14401 atggacgctg caagtacgcc agttacacaa gctaccgatt ctgctgctgg tagtagagaa
    14461 gaaaatagcg cagagagctt aagtgaagaa gagttggcaa acttaaatat tggtcgaaat
    14521 gacccttgcc cttgtggttc gggcaaaaaa tataagcatt gccatggtaa caaagcgaga
    14581 tattcgtaat taacaagcgg tcatattcag tcaggaattt gcaaattttc tgcttaatat
    14641 gaccgcttga atttatagaa agagtgaagg aaactatgtc aaaaccgatt attcaagtct
    14701 cagcagggat tattcgtaac gaatttgggc aaatttactt aacccaacgt ttagaagggc
    14761 aagattttgc tcagtctctt gaatttcccg gggggaaagt cgatcccaat gaaacccctg
    14821 aagaagcact aaaacgagaa ttagaagaag aaattggtat tcaagtgtta agcgcttttc
    14881 cgtatgaaaa tttttgcttt gaatatccaa caaaaatcat tgaatttttc ttttatttgg
    14941 tggaagagtg ggtaaatgaa ccttacggaa gagaagggca agaaggtttt tggatcgcac
    15001 aatcggattt agatgaggga gctttcccac cggcaaatgc ccaattaatt aaacgcttaa
    15061 aagaacacgc ataatttgta ttgagaactg tatctaaa
//
LOCUS       DANLVT010000054        15033 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.054, whole genome shotgun sequence.
ACCESSION   DANLVT010000054 DANLVT010000000
VERSION     DANLVT010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15033)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15033)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15033
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.054"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            38..1471
                     /gene="mepM"
                     /locus_tag="PXC99_001415"
     CDS             38..1471
                     /gene="mepM"
                     /locus_tag="PXC99_001415"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005823339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein DD-endopeptidase MepM"
                     /protein_id="HDL5417867.1"
                     /translation="MVLALKDQSSINNTSSQEDIIAIDKQEKYQSINTNLAENNTLHQ
                     EQHSSFINYVTDLLTQSALVIEHDDEIVDDQTATSYEDELVGQDDEVEEGIETVENQV
                     PGEKLPEEAEKALEDLLDVADQALRIQNQFSYTVARGDKLKDVLEQSGLTASVAKNLI
                     KQHSALAQLEPGQQFYWVLDNDGELEYMNWLVSEKEERVYERKENGKFSFQRFEKKGE
                     WKLDVVRGTIQNSFAVSLKAVGLSDRQINQLAVGLQSQIATNKLKKGDRFAILIKREY
                     IDGKVTDLGNVEGIHVISSKKSYYAIQADNGRYYSRYGETLSGGFARHPLLFAARVTS
                     SFNPKRRHPITGRISPHKGVDYGVPIGTPIIAPSDGVVEHVAYQARGAGRYIRIKHGH
                     ITTVYMHLSKTLVKPGQSVKKGERIALSGNTGGSTGPHLHYEFHINGRPVNPITVKLP
                     GSNSGMGNKERQAFLNKAKNVESRLKM"
     gene            1481..2164
                     /gene="dsbC"
                     /locus_tag="PXC99_001416"
     CDS             1481..2164
                     /gene="dsbC"
                     /locus_tag="PXC99_001416"
                     /EC_number="5.3.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional protein-disulfide
                     isomerase/oxidoreductase DsbC"
                     /protein_id="HDL5417868.1"
                     /translation="MKKNLITLGLMCLSTITFASDAKLKSQLEKIGATDVKISDSPLT
                     GFKMATSNEGVVYISQDGRYVIQGKVFELKNGKAIDITNQGLLAELNSYTNEMIVYPA
                     KNEKHVITVFMDITCHYCHLLHTKIKEYNDLGITIRYLAFPRGGMNTQTAKQMEAIWT
                     SADKVKALNDAEDGKLPTQIKTPDIVKKHYQLGIKFGVTGTPNMVTSEGELIGGYVEP
                     KELAKMLSE"
     gene            2249..3970
                     /gene="recJ"
                     /locus_tag="PXC99_001417"
     CDS             2249..3970
                     /gene="recJ"
                     /locus_tag="PXC99_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HDL5417869.1"
                     /translation="MEKIIKRRPLLTTEIVSTNPLLNRIYQSRGIKNTQELEHNLKNL
                     HRPQQLANIEQAVDLLLQAFREKSRIIIVGDFDADGATSTSLALIALRQLGFDKVDYL
                     IPDRFSQGYGLSVAVAEMVLAKGADLVLTVDNGISSTEGIALLKSHQIQVLVTDHHLP
                     PESLPNADALVNPNLAFCEFPSKSLAGVGVIFYVMMALRSRMREQHLFENKPEPNFAE
                     LLDLVALGTVADVVPLDQNNRILVHQGLQRIRSGHCRLGIKALAEVGKRDLSTLQAAD
                     LGFAIAPRLNAAGRLENMSLGVELLICENMELARRLALDLDSLNQTRKEFEQEMKAEA
                     LSICANLPSLAQSEQAHGIVLYQADWHQGVIGILASRIKDQFNRPVIAFAQESEESEY
                     LKGSARSINGVHMRDLLEHIDMRHPDLIEKFGGHAMAAGLTIHQSKLDLFKQIFDQSI
                     NAIIEPEQLQGIIYTDGELNALEFTLANAEMIRQGGPWGQHFPEPSFEGEFSILQQKL
                     LAGKHLKLMLQSEKGQLFDAIWFNVDVRAFPDLSIKKARLVYRLDINEFRGEKSLQLK
                     VEYLKYI"
     gene            4098..4946
                     /locus_tag="PXC99_001418"
     CDS             4098..4946
                     /locus_tag="PXC99_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HDL5417870.1"
                     /translation="MEKKALFRGFLLSTVALAVAACGNLSKVSDEGTTENPVFPKISE
                     SEFNHDGSQFGSWPNWENVRQIEKGMNKDQLYNLIGRPHFEEGLYGVREWDYAFNYRE
                     NGVHKICQFKILFDKNMNAQSFFWYPNGCNGNSSFALTGDFLFDFDKATLTTKGKEVV
                     DNVAQQLKASKAQQVKVAGYTDRLGSAAYNLDLSQRRSNTVKARLVQQGVTAQIEAVG
                     YGKANQVKACDGETGQALKDCLRPNRRVEISANCGVMKQNEGGNVAGPNGPAPLYQTP
                     AYDGSK"
     gene            5034..5852
                     /locus_tag="PXC99_001419"
     CDS             5034..5852
                     /locus_tag="PXC99_001419"
                     /EC_number="3.1.3.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphatase"
                     /protein_id="HDL5417871.1"
                     /translation="MNYQAIAFDLDGTLLSSNATILESSKEAIKKVREKGIKVYFVTG
                     RHHTAVRPYYVELGLDTPVVCCNGTYVYDFKNEKVLSGNPLSAEIASKLVNDAQAQGI
                     HTAVYFEDAMTYESLNIHFTKFQKWVESCAPEVRPNVYQVENFQQEIDKGVTVWKVLI
                     SDPDLAKMQKFVEKLPPDQVSPEWSWVDRVDITSVGNSKGARLAEVLKTEGIDLQKVI
                     AFGDNFNDVSMLETVGLGIAMGNSEPDIQQKAKKTIGSNNEDSIANELKAQFNL"
     gene            5855..7546
                     /gene="narQ"
                     /locus_tag="PXC99_001420"
     CDS             5855..7546
                     /gene="narQ"
                     /locus_tag="PXC99_001420"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite two-component system sensor
                     histidine kinase NarQ"
                     /protein_id="HDL5417872.1"
                     /translation="MIKAKYSIARRIGLYFLIMIGFASIISGISLGIMWSNKSDASLI
                     NVSGSLRMQSYRLLSEMDSKKALLPERLLEYHRTLHATELSSLKQSVLLPDSVIESYQ
                     QLLKDWYEMQSYVAQGDKVNYASHIEDYVQRVDDFVFRLQEFAELKLKIATGVIAIAM
                     LLIIALAYIGVWYTRKKIIGPLRQLVKASWQIQNKDFDHVKLAVNEPNELGLLSSTFT
                     EMSNELLKLYTSLEDKVQDKTRRLLAVNRSLLVLYQCSQLLTAKPINKEVLNQVLKTV
                     FDNEHLLGIDLQVYGAEYWNVSIDNKPSLDWVSAEIAIENEKLGILSWKPSLVCPGER
                     LIQNVSEMIGRSLYVVQMQKQQQQLVLMEERAIIARELHDSLAQSLTFFKIQVSLLKL
                     AKTDEKRNEILTVFEKALNDAYSQLRELLTTFRLTIQEANLQQALEKILESLRPKTSA
                     QIRLSCKLPSHMFNAQQQVHVLQIVREAVINAIKHSQATEINVIAETNDDGEHCLTIQ
                     DNGVGLAAHTQPEGHYGLTIMQERAAELKAEFSIENVESGGVKVQVLLPSMISKR"
     gene            7597..8115
                     /locus_tag="PXC99_001421"
     CDS             7597..8115
                     /locus_tag="PXC99_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDL5417873.1"
                     /translation="MQFRKAVEADFETILAIYNQAIPTHQITADLELATTQNRRKWFD
                     FHLETAQYPIWVVEDEKGIAGWFSFSPFYERPAFLHTSEISIYLDRYSKGKGYGSKII
                     EFMQAEMLNHNIHTLMAYVFELNTVSQNLMRKHGFEQWGRFPNIANMGKDEKGEDKWR
                     TLLMMSYQKGIE"
     gene            8158..8757
                     /gene="rdgB"
                     /locus_tag="PXC99_001422"
     CDS             8158..8757
                     /gene="rdgB"
                     /locus_tag="PXC99_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HDL5417874.1"
                     /translation="MEKTKIVLATSNADKVKEMADVLSQFGFEVVAQSEFGIESPEET
                     GLTFVENALIKARFAAKMTGLPAIADDSGLSVMALGGEPGLYSARYAGEQATDADNRQ
                     KLLAKMQGQENRLAKFVSCIVFLKHETDPTPYIASGECFGEILTEERGENGFGYDSLF
                     FYPPKACTFAELETKEKKAISHRAIALEQLKQQLAGENK"
     gene            8754..9074
                     /locus_tag="PXC99_001423"
     CDS             8754..9074
                     /locus_tag="PXC99_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjQ family protein"
                     /protein_id="HDL5417875.1"
                     /translation="MIITTTPTIEGKQIVEYKGLVFGEVVSGANFIRDFLAGITDIIG
                     GRSGAYESKLNGARKEALAELAKEAQKVGANAVVGVSMEYQSMGGDKGMFIVVATGTA
                     VVIR"
     gene            9078..9530
                     /locus_tag="PXC99_001424"
     CDS             9078..9530
                     /locus_tag="PXC99_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgN family cysteine cluster protein"
                     /protein_id="HDL5417876.1"
                     /translation="MQFEQHFEANFWQNKSLLEMNDAEWEALCDGCGKCCYRKYIQGR
                     GRRERLYYTSVACNLLDVNTGRCMNYSNRFKIESDCTKLTKKNLPDFGWLPKTCAYRL
                     LYEGKPLFDWHPLISKDPDSVKNAGMLIANGIHEKDVIDWFEFVIDEV"
     gene            complement(9571..10152)
                     /gene="lpcA"
                     /locus_tag="PXC99_001425"
     CDS             complement(9571..10152)
                     /gene="lpcA"
                     /locus_tag="PXC99_001425"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HDL5417877.1"
                     /translation="MYLEQIKAELQEAADVLDKFMSDEKNIKLIQDAAMLIANSFKQG
                     GKVISCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYEYVFS
                     RYLEAVGQKGDVLFGLSTSGNSKNVLNAIKVAKEKGMKVIAMTGKDGGQMAGLADVEI
                     RVPHFRYADRIQEIHIKVIHILMMLIEFEMEKA"
     gene            10461..11420
                     /locus_tag="PXC99_001426"
     CDS             10461..11420
                     /locus_tag="PXC99_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HDL5417878.1"
                     /translation="MVVNPESFEQIIGQSVKIKEVVEQAKKFANLDAPLLIQGETGTG
                     KDLFAKSCHHFGSRRMQKFIAVNCAGLPAEEAESEMFGHRGNGVESVGFFEYAHGGTV
                     LLDSISELSLEMQAKLLRFLNDGSFRRVGEDQEIQVNVRVICTSLQPLSLLVEKGKVR
                     EDLFHRLNVLTLNLPPLRDRKEDIPLLADYFIAQISNQLGVSKLEYDNVFLQALQNYH
                     WRGNLRELYNALYRACTLSHSYRLAVKDLHLPRDMEAMIEVREEATLEEMMSQYEAQL
                     LHQFYAEYPSTRKLAQRLGLSHTAVANKLRQYGLTKNGNSKDE"
     gene            11413..13164
                     /locus_tag="PXC99_001427"
     CDS             11413..13164
                     /locus_tag="PXC99_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5417879.1"
                     /translation="MNKLAVIFSVCFANLGLNSTAYAAPSIPQELLENSLVYCTTSSG
                     FSFNPQKSDVSSNMNVVTEQIYDKLVEFNPKKNRLEPALAESYSISDDGLVITLRLRK
                     NVAFHTTPWFTPSRKLNAEDVVFSLKRMIGKESDLPEVKSEPESVLHHQRQSYIYQKT
                     AGQIYFPYFESVDLANKIASIHSPSNDIVKIELVRPDSALLAHLASQYAVILSKEYAL
                     QLNADDNLVQLDLLPVGTGVYQLESYENNDYVRLKPNMNYWGKKAYIQNMVVDFSTEA
                     TGRMAKFLNNECDVVAFPEPSQLSVLNNRQLISSKGANLVYLAFNMQRGIGQDLALRQ
                     RIARGINRKRIAEKLFYGTGEVADNLLPTALWSKKNNGSYPYQPHQNSGEQAVEMHDS
                     IINRSLDSKTETEEVNQKQRLKLWVIDEKRVYNQHPLKMAEMIRADLATQNLEVEIRA
                     VSRAYLVQQLANKSADYDLILGGWLANNLDPNSFLEALLSCKAAETVTNLSNWCNEDF
                     DFWLQTARLSDDPASANLLYEFAQKLLEEQLPILPLMNANRVLVIKDGVKQADISPFG
                     QVKLSELRLGLGHKKGN"
     gene            13167..14132
                     /locus_tag="PXC99_001428"
     CDS             13167..14132
                     /locus_tag="PXC99_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL5417880.1"
                     /translation="MLIVFFRKIFLTLITLIFLSLISFNILLRDPLNHLAELGWFEAY
                     CYYVKSLLNGDFGISFSNGEPLTAQILQVFPATITLCLSALIVSLIIGLPLGFFAATQ
                     QKNMVGRLLNTLGSLSLAVPVFWLALVLMYYASLNQWEVSAIGEIHSLYPKQMVTGFL
                     LLDIWLSDVPYKLKMMQSALHHLALPTLVLAVPATLEVMHITQARAGYVMKQNYIKIA
                     KTRGWTPFRVWRTHIICNTLPALLPMIARTFILIFAFGMLIENIFSWGGIGRWLINAL
                     AIQDYNAISAGVVAIGVFVLLVDMVTGFVRVMLDPSDKKDWYGSY"
     gene            14119..15012
                     /locus_tag="PXC99_001429"
     CDS             14119..15012
                     /locus_tag="PXC99_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL5417881.1"
                     /translation="MAVIKEPEQFRETNAFKAFWFHFRQDKLALGSFYLFLLLLALIF
                     VGSLLAPYNYNEQFVGLELMPPSWDDKGQISHFLGTDDLGRDILSRIMYGFYYTLGSA
                     LMITLLIAIIGGMIGIYAGLKKGRSFWLISHLFDTFLFMPILLIAIIIATLMEASLVN
                     AMLAIFLAMLPHFIHKIYQATEKQLKKEYIITLKLDGASCWYLIREVIIPNLTGVAIK
                     ALSHIFVIAILDISALSFIMLGAKSPTPEWGAMIRESMELIYIAPWTVILPGLAIIFS
                     IFTVTILGTRLSVIFEKYRKE"
BASE COUNT         4829 a         2445 c         3211 g         4548 t
ORIGIN      
        1 ggttttctta ttagcggtat ttagtctatt tgttgatatt gttctcgcac taaaagatca
       61 atcctcaatc aataatacat cttcacagga agatattatt gccattgata aacaggaaaa
      121 atatcagagt atcaacacta atttggcgga aaataatact ctccatcagg agcaacattc
      181 cagttttatt aattatgtga ctgatttact gactcagtcg gcattagtaa tcgaacatga
      241 cgacgaaatt gttgatgatc aaacagcgac ttcttatgaa gatgaattag ttgggcaaga
      301 cgatgaagta gaagaaggga ttgaaacggt tgaaaatcaa gttcctgggg aaaaactccc
      361 agaagaagct gaaaaggcat tagaagattt acttgatgtg gctgatcaag cactacgaat
      421 tcaaaaccaa ttcagttata ccgtagctcg aggtgataaa cttaaagatg tattagagca
      481 atcaggctta actgcatccg ttgcgaaaaa tttaattaag caacattcgg cattagcaca
      541 attagaaccg ggtcaacaat tttattgggt attagataat gacggtgaat tagaatatat
      601 gaactggctg gtttccgaaa aagaggaacg ggtttatgag cgaaaagaaa atggtaaatt
      661 ttcttttcaa agatttgaga aaaaagggga atggaagtta gatgttgtaa gaggaactat
      721 tcagaatagt tttgcggtta gcttaaaagc cgttggctta tcagaccgcc aaattaacca
      781 gctagcggtt ggattgcagt cacaaattgc gacgaataaa ttaaaaaaag gggataggtt
      841 tgcaattctg attaagcggg aatatattga cggcaaagta acggatttag gaaatgtgga
      901 aggaatccat gtaattagca gtaaaaaaag ttattatgct attcaagcag ataatggacg
      961 ctattatagt cgatatggtg aaacattaag tggaggattt gctcgtcatc cattattatt
     1021 tgcagcaaga gtaacttctt ctttcaaccc caaacgcaga caccctatta cagggagaat
     1081 tagtccgcat aaaggggttg actatggcgt gccaataggt actccgatca tcgcaccaag
     1141 tgatggtgtc gtagagcatg tggcatatca agcccgtgga gcaggacgtt atattcggat
     1201 aaaacacgga catattacga ctgtttatat gcacctcagc aaaacgttgg taaaaccagg
     1261 gcagagtgtt aaaaaagggg agcggatagc attatcgggt aatacaggcg gttcaaccgg
     1321 gcctcattta cactatgaat tccatattaa tggtcgaccg gtcaacccga ttacggtaaa
     1381 attgcctggc tcaaattcag gtatgggtaa taaagaacgt caagcattct taaataaagc
     1441 gaagaatgta gaaagtagat taaaaatgta aggattctca atgaaaaaaa atctaatcac
     1501 tttaggatta atgtgtttat caaccatcac gtttgcttca gatgcaaaac taaaaagcca
     1561 gcttgaaaaa attggagcca cagatgttaa aatttcagat tctccattaa caggctttaa
     1621 aatggcgact tcaaatgaag gtgttgtata tatcagccaa gacggtcgtt atgtaattca
     1681 aggtaaagta tttgagctaa aaaatggtaa agcgattgat attactaatc aaggattgtt
     1741 ggcagaattg aattcataca ctaatgaaat gatcgtatat ccagcgaaaa atgagaaaca
     1801 tgtgattacg gtgtttatgg atattacttg ccattattgc catttactac atactaaaat
     1861 caaagaatat aatgatttag gtattaccat tcgctatttg gcattcccgc gtggtggaat
     1921 gaatacccaa acagcaaaac aaatggaagc tatttggaca tcagcagaca aagtaaaagc
     1981 actgaatgat gctgaagatg gtaaattacc aacccaaata aaaacgccgg atattgtgaa
     2041 aaaacattac caattaggga ttaaatttgg tgtgacaggt accccaaata tggtaacttc
     2101 agaaggtgag ttgattggtg gttatgtaga gcctaaagaa ttagcgaaaa tgttaagtga
     2161 gtaattcatt aacttgaata caagcggtct ttttttgtaa aatttttgca aaagaagacc
     2221 gcttgttgtt tcattaaaga agagtattgt ggaaaaaata attaaaaggc gcccattatt
     2281 aacaacggaa atagtctcta caaacccgtt attaaatcga atctatcaaa gtcgaggcat
     2341 aaagaatacg caagaactag agcataattt aaagaatttg catagaccac agcaacttgc
     2401 caatattgag caagccgttg acttgctatt acaagccttt cgtgaaaaaa gccggatcat
     2461 tattgtgggt gattttgatg cagatggtgc aaccagtaca tcgcttgccc ttattgcgtt
     2521 acgccaattg ggtttcgata aggtagatta tttaattccg gatcgttttt ctcaggggta
     2581 cggattgagt gtagcggttg ctgaaatggt attagcaaaa ggggcggatt tagtcttaac
     2641 ggtagataat ggaatttctt cgactgaagg cattgctctg ctaaaaagcc atcagattca
     2701 agttttggtt accgatcatc atttaccgcc agagagccta cccaatgcag atgcactggt
     2761 aaaccccaat ttagcttttt gtgaatttcc gtctaaatct ttagccgggg taggcgtgat
     2821 cttctatgta atgatggcat tgcgttctcg tatgagagaa caacatttat ttgaaaataa
     2881 accagagcca aattttgctg aattactgga tttagtcgct ttaggcacag tggctgatgt
     2941 agtgccgtta gatcaaaata atcggatatt ggtgcatcaa gggttacagc gaatccgttc
     3001 agggcattgc cgtttaggga taaaagcttt agcggaggtg ggcaagcgag atctttctac
     3061 tttgcaagca gcagatttgg gttttgctat cgcaccacgt ttgaatgcag ctggtcggtt
     3121 agaaaatatg tctttagggg ttgagttact aatttgtgaa aatatggaat tagctcgccg
     3181 gcttgcgctt gatcttgatt ctcttaatca aacccgaaaa gagtttgaac aagaaatgaa
     3241 agcagaagca ctgtcgattt gtgcgaattt gccaagtctt gcgcagtctg aacaggcaca
     3301 cggaatagtg ttatatcaag cagattggca ccaaggtgta attgggatct tagcttctcg
     3361 cattaaagat caatttaacc gtcctgtcat tgcttttgca caagaaagtg aggaaagtga
     3421 atatctaaaa ggttctgctc gctcgatcaa cggagtacat atgcgagatt tactggaaca
     3481 tatcgatatg cgacatccag acttgattga aaaatttggt ggacacgcaa tggcggctgg
     3541 tttgactatc catcaatcaa aattagattt atttaaacag atatttgacc aatctattaa
     3601 tgcaattatc gagcctgagc aattacaagg catcatttat accgatggtg agttaaatgc
     3661 actagagttt actttagcca atgccgagat gattaggcaa ggtgggcctt ggggacaaca
     3721 ttttccagaa cctagttttg aaggggagtt tagcattctc caacaaaaat tactcgcagg
     3781 taaacattta aaattaatgt tgcaatcaga gaaagggcaa ctatttgatg caatttggtt
     3841 taatgtggat gtaagggcgt ttcctgactt atcgatcaaa aaggcaagat tagtttatag
     3901 gttggatatt aatgaatttc gaggagagaa atctttgcaa ttaaaagtgg agtatcttaa
     3961 atatatttga aatgttattt tatgtaaatt taatagaatt aattatattt gtattgtaga
     4021 atccgtccga atgcaacttt aataggttgt gaagctattt ttttatacag attactataa
     4081 ggaaacttaa tatgaaaatg gaaaaaaaag cccttttccg tggattttta ttatcgacag
     4141 tggcattagc agtggctgct tgtggtaact taagtaaagt gagtgatgaa ggaacaactg
     4201 aaaacccggt attcccgaaa atctcagaat ctgaatttaa ccacgatggt tcacaatttg
     4261 gttcatggcc aaactgggaa aacgttcgtc aaattgaaaa agggatgaac aaagatcaat
     4321 tatataatct aattggtcgt cctcattttg aagaaggctt atatggtgtt cgtgaatggg
     4381 actatgcatt caattaccgt gaaaatggcg tacataaaat ttgccaattt aaaattttat
     4441 tcgataaaaa tatgaatgca caaagtttct tctggtatcc aaatggatgt aatggaaact
     4501 catcatttgc tttaactggc gatttcttat tcgatttcga taaagcgact ttaactacaa
     4561 aaggtaaaga agttgttgat aatgttgctc aacaattaaa agcatctaaa gcacaacaag
     4621 ttaaagtagc aggctataca gaccgtttag gctctgctgc ttataactta gacttatcac
     4681 agcgtcgttc taatacagtt aaagctcgtt tagtacaaca aggcgttaca gcacaaattg
     4741 aagcggtagg ttatggtaaa gcgaatcaag taaaagcttg tgatggtgaa actggtcaag
     4801 cattaaaaga ttgtttacgc cctaaccgtc gtgttgaaat ttctgcaaat tgtggtgtaa
     4861 tgaaacaaaa tgaaggtggc aatgttgcag gtcctaatgg tccggctcca ctttatcaaa
     4921 ccccagcata tgatggcagt aaataatttc tagttttgac taacttagag tagaatatta
     4981 aggcaaccaa atggttgcct tttcttttat ctatttattt ataggggaat actatgaact
     5041 accaagctat tgcatttgat ttagacggaa cactactttc atcgaacgca acaattttag
     5101 aatccagtaa agaggctatt aaaaaggtaa gagaaaaggg aattaaagtc tactttgtta
     5161 ccggtaggca ccatactgcg gttcgccctt attatgtaga actagggctg gatacgccag
     5221 ttgtgtgttg caatggcact tatgtgtatg attttaaaaa tgaaaaagta ttaagcggta
     5281 atccgttatc agcagaaatt gcttcaaaat tagttaatga tgcacaagct caagggattc
     5341 atactgcggt ttattttgaa gatgcaatga cttatgagtc tttgaatatt cacttcacta
     5401 aattccaaaa atgggttgag tcttgcgcac cagaagttcg tccgaatgtt tatcaggtag
     5461 aaaatttcca acaagaaatt gataaaggtg taaccgtatg gaaagtgctt attagcgatc
     5521 cagatcttgc caaaatgcaa aaatttgttg aaaaattacc gcctgatcaa gtaagcccgg
     5581 aatggtcttg ggttgatagg gttgatatta ccagtgttgg taacagcaaa ggggcaagat
     5641 tagcggaagt attaaaaaca gaaggtattg atttacaaaa ggtgattgcc tttggcgata
     5701 atttcaatga tgtttctatg ctagaaaccg ttggattagg cattgcaatg ggaaattcag
     5761 aaccagatat tcagcaaaaa gcgaagaaaa ctataggttc aaataatgaa gatagtattg
     5821 ctaatgaatt gaaagctcaa tttaatcttt aattatgata aaagcaaaat actctattgc
     5881 taggcggata ggactctatt ttttaattat gatcggattt gcttcgatta tcagtggaat
     5941 ctcacttggt attatgtgga gcaataaatc tgatgcgagc ctgattaatg tttcaggctc
     6001 acttcgtatg caaagttatc gattgttatc agaaatggat tcaaaaaaag cgctgctacc
     6061 tgagcgattg ttggaatatc atcgaacgct acatgctaca gagcttagtt cattaaagca
     6121 aagtgtttta ttgccagata gcgtgataga aagctatcaa caattactta aagattggta
     6181 tgaaatgcaa tcttatgtcg ctcagggaga taaagttaat tatgcttcgc acattgaaga
     6241 ttatgtgcag agagttgatg attttgtttt ccgcttacaa gagttcgctg agttaaaatt
     6301 aaagattgca acaggcgtga ttgcgattgc aatgttactg attattgccc ttgcttatat
     6361 tggcgtttgg tatactcgaa aaaagattat tggaccttta aggcaattgg taaaagcgag
     6421 ttggcaaatt caaaataaag attttgacca cgtaaaatta gcggttaatg aacccaatga
     6481 attagggcta ctttcctcta cttttactga gatgtctaat gaattattaa aattatatac
     6541 ttcattagaa gataaagttc aggataaaac acgtcgttta ttggcggtaa atcgttcttt
     6601 actggtatta tatcaatgct ctcaattatt aactgctaag ccgattaata aagaagtgtt
     6661 aaatcaagta cttaaaacgg tatttgataa tgaacatttg ctagggattg atttacaagt
     6721 atatggggct gaatattgga atgtatcaat agacaataaa ccaagtttag attgggtttc
     6781 tgctgaaatt gcaatagaaa atgaaaaatt gggtatctta agctggaaac cctcactggt
     6841 ttgtcctggt gaacgattga tccaaaatgt gtcggaaatg attggtcgta gcctttatgt
     6901 agtgcagatg caaaagcaac agcaacaatt ggtactcatg gaggagcgtg caattattgc
     6961 tcgtgagtta cacgattcct tagcccaatc tcttacgttt ttcaaaattc aggttagcct
     7021 gcttaagctt gctaaaacag atgaaaagcg taatgaaatt ttaactgtat ttgaaaaagc
     7081 gttaaatgat gcttacagcc aattaaggga gctgttgacg acgtttaggc taacgattca
     7141 agaagcgaat ttacaacaag cgttagaaaa aattttagaa agcttaagac cgaaaacctc
     7201 agcacagatt cgcttaagtt gcaaattacc ttcgcatatg tttaatgctc agcagcaagt
     7261 tcacgtattg caaattgtac gagaagctgt gattaatgct attaagcatt cgcaagccac
     7321 tgaaattaat gtgattgctg aaacaaatga tgatggtgaa cattgtttga ctattcaaga
     7381 taatggcgta gggcttgctg cccatacgca accagaaggg cattatggac tgacgattat
     7441 gcaagaacgg gcggctgaac tcaaagccga attttcgatt gaaaatgtgg aaagtggcgg
     7501 agtaaaagta caggttttat tgccgagtat gattagcaag cggtaataaa atattaattt
     7561 tttgcgtatt attggcaacg aataaaagga taacaaatgc aattccgaaa agcagtagaa
     7621 gcggattttg agacaatatt ggcaatttat aatcaagcaa ttcccactca ccaaattacc
     7681 gccgatttag aactggcaac tacgcaaaat cggcggaagt ggttcgattt tcaccttgaa
     7741 acagcccaat atcctatttg ggtggtcgaa gatgaaaaag gcattgctgg ctggtttagt
     7801 ttttcaccat tttatgaaag accggcattt ttacatactt cggaaatcag tatctattta
     7861 gaccgctatt ccaaaggaaa aggctatggc tcaaaaatta ttgagtttat gcaagctgaa
     7921 atgcttaatc acaatattca tacgttgatg gcgtatgtgt ttgaattaaa tacagtgagc
     7981 caaaatctaa tgagaaaaca cggctttgaa caatggggaa gatttccgaa tattgctaat
     8041 atgggaaaag atgagaaagg tgaggataaa tggcgaacgt tgctgatgat gtcttaccaa
     8101 aaaggtatcg aataacaagc ggtgattttt tagaatattt ttgcaaataa ggacaatatg
     8161 gaaaagacaa aaattgtact tgcaacaagt aatgcagata aagttaaaga aatggcagat
     8221 gtactctcac aatttggttt tgaggtggtg gctcaaagtg aatttgggat tgaatcaccg
     8281 gaagaaaccg gtttgacttt tgttgaaaat gcgctgatta aagcacgatt tgctgctaaa
     8341 atgacaggtt taccggcgat tgccgatgat tcaggtttat cggttatggc acttggtggt
     8401 gaaccggggc tatattctgc acgttatgcc ggagagcagg caaccgatgc cgataatcgc
     8461 caaaaattac tagccaaaat gcaagggcaa gagaatcgtc tggcgaaatt tgtcagttgt
     8521 atcgtgtttt taaaacacga aactgaccca acaccttata ttgcgtcggg tgaatgtttc
     8581 ggtgaaattt tgacggaaga aagaggtgaa aatggtttcg gctacgattc cctgtttttc
     8641 tacccaccga aagcttgcac ttttgccgaa ttagaaacca aagagaaaaa agcgatttca
     8701 caccgtgcaa tcgcactaga gcaattaaaa cagcaattag caggagagaa taaatgatta
     8761 ttacaactac acctacgata gagggtaaac aaattgtaga atacaaaggg ttagtatttg
     8821 gcgaagtagt ttctggggct aattttatcc gtgatttctt agccggtatc accgatatta
     8881 ttggcggacg ttcaggtgct tatgaaagca aattaaacgg tgcaagaaaa gaggcattag
     8941 ctgaattagc taaggaggca caaaaagtgg gggcaaatgc ggtggttggc gtttctatgg
     9001 agtatcaatc aatgggcggc gataaaggaa tgttcatcgt ggtagcgact ggtactgcgg
     9061 ttgtaatacg ttaatttatg cagtttgaac aacactttga agcaaatttc tggcagaaca
     9121 aatcgctact tgaaatgaat gatgctgaat gggaagcatt atgtgacggt tgtggtaagt
     9181 gctgctaccg gaaatatatt cagggaagag ggcggcgtga acggctttac tatacctcgg
     9241 ttgcctgtaa tttattagat gtgaatacag gccgttgtat gaattactcg aaccgtttta
     9301 aaattgagtc ggattgtaca aaattaacta aaaagaactt acctgatttt ggctggttgc
     9361 caaaaacctg tgcttatcgt ttactttatg aaggaaagcc tctttttgat tggcaccctt
     9421 taatctctaa agatcctgat tctgtaaaaa atgccggaat gctgattgct aacggtattc
     9481 acgaaaaaga tgtgattgat tggtttgagt ttgttattga tgaagtatga gaaaaaggcg
     9541 tttggtgcaa acgccttttt gttatagaga ttaggctttt tccatctcaa attcaattaa
     9601 catcatcaaa atatgaatca ctttaatgtg aatttcttgg atgcggtctg cgtaacggaa
     9661 atgaggtact cggatttcca catcggctaa tcctgccatt tgcccgccat ctttgccggt
     9721 cattgcaatc actttcatgc ctttttcttt ggcaactttg atcgcattta acacattttt
     9781 agagttacca gaggttgata gaccaaagag tacatcgcct ttttgcccaa cggcctctag
     9841 ataacgagag aagacatatt cataaccgaa gtcattactt acacagctta aatggctgac
     9901 atcggaaata gcgattgccg ggtatccggg acggttttca cggtaacgac ctgttaattc
     9961 ttcggcaaag tgcatcgcat cacagtgcga accgccatta ccgcaagaaa tcaccttacc
    10021 accttgcttg aaactatttg caatcagcat ggcggcatct tgaattaatt taatattttt
    10081 ttcatcagac ataaatttgt ctaatacatc tgcagcttct tgaagctcag ctttaatttg
    10141 ttctaaatac atcatttgct cctttgtttg caaaacgctt acctttaaac atcggcttta
    10201 ccaatggggg tagcgagtaa aaaattcgtt ttttatgacc gcttgaggca taaaaagtgc
    10261 aataagttta gaagatctat gctgtattgt aaacctaata acttaaataa tctgaatagg
    10321 gttgtaaaca aaagtttcca aaagagaaaa atagcggtat gatcgcctca caatccctct
    10381 cgcattgtta actctagtag ctaatatcag gctttaagcg tattaaacaa tgcacaaatt
    10441 tgctatttat aggagactat atggtcgtaa atccagaatc ttttgaacag ataattggac
    10501 aatctgtaaa gataaaagag gttgttgaac aagcaaaaaa atttgccaac cttgatgcac
    10561 cattattgat tcaaggtgag acgggaacag gaaaagattt atttgccaaa tcttgtcacc
    10621 attttggatc tcgtcgaatg caaaaattta ttgccgtgaa ctgtgccggt ttaccggctg
    10681 aagaagcaga atcggaaatg ttcggacatc gtggcaatgg cgttgagtcc gtcggtttct
    10741 ttgaatatgc tcacggtggt acagtattat tagactctat ttctgagtta tcgctggaaa
    10801 tgcaagccaa attattgcgc tttttaaatg atggctcttt tcgtcgagtg ggcgaagatc
    10861 aagagattca agtcaatgtt agggtgatct gtacttcatt acagcctttg tcattattag
    10921 ttgaaaaagg caaagtaaga gaagatctgt ttcatcgttt aaatgttctc actttaaatt
    10981 taccaccttt gcgagatcga aaagaggata ttccattatt agctgattac tttatcgccc
    11041 aaattagcaa tcagttgggg gtgagcaaat tagagtatga taatgttttt ttgcaagcat
    11101 tgcagaatta tcactggcga ggcaacttaa gagagcttta taacgcactt tatcgagctt
    11161 gtacactttc gcatagctac cgtttagcgg taaaagatct tcatttaccc agagatatgg
    11221 aggcgatgat tgaagtacgt gaggaggcga cacttgagga aatgatgagc cagtatgaag
    11281 cccaattatt gcaccaattt tatgcagaat atccgagtac ccgaaaatta gcacaacggc
    11341 tcggactttc acatactgcg gtggcaaaca aattgcgtca atatgggtta acaaaaaatg
    11401 gaaacagtaa agatgaataa actagcggtc attttttcag tatgttttgc aaatttaggg
    11461 ctaaattcga ccgcttacgc agcgccaagt attcctcaag agctacttga aaatagcctt
    11521 gtgtattgca ctacttcatc gggattctct tttaacccac aaaaatccga tgtgagttcg
    11581 aatatgaatg tggtaacaga gcagatctac gataaattag ttgagtttaa tccgaaaaaa
    11641 aatcgactag agcctgcttt agctgaaagt tattcaatca gcgacgatgg tttagtgatt
    11701 acattacgtt taagaaaaaa tgtcgctttt catacaactc catggtttac tccgagtcgt
    11761 aaattaaacg cagaagatgt ggtgttttcg ctaaaacgaa tgattggtaa agaaagtgat
    11821 ttacctgaag tgaaaagtga gcctgaaagt gtattacacc accagcgaca aagctatatt
    11881 taccaaaaaa cagcggggca gatttatttt ccttattttg aaagtgttga tttagcgaat
    11941 aaaattgcca gcattcattc tccgtcaaat gacattgtaa aaattgaatt agtccgtcct
    12001 gattcagcat tgttggcgca tttagccagc caatatgcag ttattctgtc taaagaatat
    12061 gctttacagc tcaatgcaga tgataactta gttcaactgg atttattacc ggtaggaaca
    12121 ggcgtatatc aacttgaaag ttatgaaaat aatgattatg tgcgtttaaa accaaatatg
    12181 aattactggg gcaaaaaagc atatattcaa aatatggtcg tagatttttc cacagaagcg
    12241 accggcagga tggcaaaatt tttaaataat gaatgtgatg tggttgcttt tccggaacct
    12301 agccaattat cagtgttaaa taatcggcag cttattagta gtaaaggtgc taatttggtt
    12361 tatttagcat tcaatatgca acggggtatt gggcaggatt tggcattacg ccaacgtatt
    12421 gcacgcggca taaatcgcaa acgtattgca gagaaattat tttatggtac aggtgaagta
    12481 gcggataacc tattaccaac agctttgtgg tcgaaaaaaa ataatggaag ctacccttat
    12541 caaccacacc aaaattcagg tgagcaagcg gttgaaatgc atgacagtat tataaatcgg
    12601 tctttagata gcaaaacaga gaccgaagaa gtaaaccaaa aacagcgctt aaaactgtgg
    12661 gtaattgatg aaaaacgagt ttataatcaa cacccattaa aaatggcaga aatgatacgt
    12721 gctgatttag ctacgcaaaa tttagaggtc gaaattcgcg cagtaagtcg agcttatttg
    12781 gtgcaacagc ttgctaataa aagtgcggat tatgatttga ttttaggtgg ttggttagca
    12841 aataatcttg atcctaacag ttttttggag gccttactca gttgtaaagc tgcggaaacg
    12901 gtgactaatt tatcaaattg gtgcaatgaa gattttgatt tttggttaca aacagcccgt
    12961 ctaagtgatg atccggcatc agctaattta ttgtatgaat ttgcacaaaa attattagaa
    13021 gagcaattgc ctattctccc tttaatgaat gctaatcgtg tattagtcat aaaagatgga
    13081 gtgaaacagg cagatatttc ccctttcggc caggtaaaat tatcagagtt acgtttgggc
    13141 ttggggcata aaaaaggaaa ctaattatgc tgattgtctt ttttcgaaaa atttttctaa
    13201 ccttgattac gttgattttt ttgtcactta tcagttttaa tattctgtta cgagatccat
    13261 taaaccactt agccgagtta ggctggtttg aggcttattg ttattatgta aaatctctgc
    13321 taaatggtga ttttggtatt agtttcagta atggagaacc gctcacagcg caaattttac
    13381 aggtgttccc ggctacaatt acgctttgtt tatcggctct cattgtttct ttaattattg
    13441 gtttgcctct tggttttttt gcggctactc agcaaaaaaa tatggttggg cgattattaa
    13501 atacactagg ttcattgagt ttagccgtgc cggtattttg gctggcatta gtgctaatgt
    13561 attacgcttc tctcaatcag tgggaagtgt cagcaattgg agaaatccat tcgctttatc
    13621 cgaaacagat ggtaaccggc tttttgctat tagatatttg gttatctgat gtaccttata
    13681 aattaaaaat gatgcagagt gctttacatc acttagcttt gccgacatta gtcttggctg
    13741 tgccagctac attagaagtt atgcatatta ctcaagctag agcaggttat gtaatgaaac
    13801 aaaattacat taaaatagcg aaaacgcgtg gctggacacc gtttagagtt tggagaacgc
    13861 atattatttg taatacttta cctgcattat tacctatgat tgcccgtacc tttattttaa
    13921 tttttgcctt cggtatgtta attgagaaca tatttagctg gggaggaatt ggacgttggc
    13981 tgataaatgc ccttgctatt caagactata atgcgatttc agcgggagta gttgcaatcg
    14041 gggtgtttgt gttattagta gatatggtta caggctttgt gcgggtgatg ttagacccat
    14101 cagataaaaa ggattggtat ggcagttatt aaagaacccg agcaatttag agaaaccaac
    14161 gcatttaagg cattttggtt tcatttccga caagataaac ttgcacttgg cagtttttat
    14221 ctttttttgc tattactggc tctcattttt gttggtagtt tgcttgctcc ttacaattat
    14281 aatgaacaat ttgttggttt agaattaatg cctccctctt gggacgacaa aggtcaaatc
    14341 agccattttt taggcactga cgatttagga cgggatattt taagccgtat tatgtatggt
    14401 ttttactaca cgcttggttc cgcactgatg attaccttat taattgcgat tatcggcggt
    14461 atgatcggga tttatgccgg gctgaaaaaa ggacgttcat tttggttgat tagccatttg
    14521 ttcgatacct ttttatttat gccgatttta ttgattgcga tcatcattgc aaccttaatg
    14581 gaagcgagtt tggtcaatgc aatgttggcg attttcttag cgatgttgcc gcattttatc
    14641 cataaaattt atcaagcaac cgaaaaacaa ctcaaaaaag agtacatcat taccttaaag
    14701 ctagacggtg caagctgctg gtatttaatt cgagaagtga ttattcctaa tcttaccggc
    14761 gtggcaatta aagcactttc acatattttt gtgatcgcca tattagatat tagtgcgtta
    14821 agttttatta tgctgggggc taaaagcccg acccctgaat ggggagcgat gattcgtgaa
    14881 tccatggaac tgatttatat agctccttgg acggtgatat tacctggctt agcaattatt
    14941 tttagtattt ttaccgttac aatacttggt acacgcttaa gcgtgatttt tgaaaaatac
    15001 cgtaaagaat agtatttaaa taggatactg aca
//
LOCUS       DANLVT010000055        15008 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.055, whole genome shotgun sequence.
ACCESSION   DANLVT010000055 DANLVT010000000
VERSION     DANLVT010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15008)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15008)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15008
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.055"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..167)
                     /locus_tag="PXC99_001430"
     CDS             complement(<1..167)
                     /locus_tag="PXC99_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5417882.1"
                     /translation="MKAQQLKNAILQLAIQGKLVPQDPNDEPASELLCKIQAEKDRLI
                     AEGKIKKNKKTA"
     gene            complement(373..2034)
                     /locus_tag="PXC99_001431"
     CDS             complement(373..2034)
                     /locus_tag="PXC99_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HDL5417883.1"
                     /translation="MLTWEHIEKMIAHQQFIREKAEIEYKEAKNSVPKDLWHTYSAFA
                     NSNGGFILLGIKENEQGHFPELLISGVNDPDKVIDELFSQSRSEKVSKSLLKDNDVKI
                     FQVENKSVIAIYVKAADILDRPIHLNGDYRLSYVRLNSGDHKLTSSELRSFISSYSQK
                     DADGRIVPYASIDDISLSTLDKYRNLLKAHNSTSKLLTLSDEKLLQEIGAYKKDLAQN
                     SEGITNAGLLMFGKHYAITSIFPHFFFEYYEEAGDVKRYTLRITDFDLEEGNLFEFYL
                     KIVPLIQELGKDKHFKLDNLTRTEENEITDGLREALINAITHADYFNNVRHLKVIKTK
                     DNKLIFENAGVMLVDIPTAIAGQRSECRNSIIHNLFHRLGLCERQGQGVRDIYSYWQS
                     RNFNSPLLESEIDYTKLTLTFQSGMIADFEEKFTACFGENFSELQPIQKDCLLFIAFN
                     QGKAMFAELAQKLPQYPRRNITLALARLKEKGLLTSSGSPRKQLYTLVNLEWIITEKS
                     QDDYFNPPFDQLDKASESKGAPPKKSKVKQVKQLPQNKANKLPPK"
     gene            complement(2047..3516)
                     /locus_tag="PXC99_001432"
     CDS             complement(2047..3516)
                     /locus_tag="PXC99_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
                     /protein_id="HDL5417884.1"
                     /translation="MSLNNIVKRLQDVMRNDAGINGDAQRIEQIVWILFLKIYDAKEQ
                     EWELENDEYHSILPNFLRWQNWAEDKKDGKAMTGDELLSFVNNELFPTLKNLPISADT
                     PMNQRIIRAAFEDNNNYMKNGVLLRQVINIIDEIDFAHYQERHAFGDIYENILKSLQS
                     AGNAGEFYTPRAVTDFMVQAIKPKLGERIADFACGTGGFLTSALKVLESQIQTLSDRT
                     LFNNSVYGIEKKALPHLLCITNLLLHDIDNPNVHHDNALEKSVKDYTENDKFDVILMN
                     PPYGGSEIEQIKKNFPTALQSSETADLFMSVIMYRLKQNGRAAVVLPDGFLFGTDNAK
                     VAIKKKLLEEFNLHTIIRLPHSVFAPYTSITTNILFFDKTEPTRETWVYRLDMPQGYK
                     NFSKTKPMKLEHFNEVVEWWGNRQVIEVEGFDKAKSFTLKEMSDRQYNLDLCGFPHEE
                     EEILPPDELIADYQRKRTAYNADIDKILAEITDILGIKL"
     gene            complement(3564..5915)
                     /locus_tag="PXC99_001433"
     CDS             complement(3564..5915)
                     /locus_tag="PXC99_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL5417885.1"
                     /translation="MYTLQELKQMNEQEIRSRLISPAIRNAGWSDRQIGEEYTFKTNK
                     RFTDGQVVVDPKTTQTKRIEAKRVDYLLYTSANQKIAVVEAKDNHHSSRHGLQQAMTY
                     ARLLDVPFAYSSNGDEFVEHDFITGVQRTLPMSAFPTPDELHQRWAKQYTTEELKIIQ
                     QPYYTSSTDTFKEPRYYQEIAINRTVEAVAKGQQRILLVMATGTGKTYTAFQIIHRLK
                     TSGAKKKILFLADRNVLVDQPMMQDFKPFKDKMVKVSNKKLDSAYEVYLALYQQLDGE
                     TDNELFKQFQPSFFDLIVIDECHRGSAKEDSDWRAILKYFKDATHIGMTATPKETDDA
                     SNITYFGEPIYTYSLKQGIEDGFLAPYRVIRVDLDCDLKGWRPTKGLKDHQGNEIEDR
                     LYTVKDFDYNIVLNDRTRLVAERICEFLRKTDRLQKTIVFCANINHAERMVAELSRLN
                     ADMLKHNSKYVCQITGDQSGKGVDLEEFCDVANEGKDYPVIAVTSKLMTTGVDSKTCK
                     LVVLDANIQSMTEFKQIIGRGTRLRPDFGKEFFTILDFRGVTRLFADPAFDGEPVVIL
                     DVPENKPLVEQPLPKPSDKDIIKDPELKPYKIPVVVDFGTLKLRILDEKVQYLNEQGE
                     LVSEDIDLFSKREMQKEFGSYEQFQQQWTTSGEIFSKFYTDPKWLAALRQTRQFSHDV
                     EDFDVLSHISFGKKPLTKTERAEKVKQSGYVEQYSPENQQVLGLLLNEYVKSGNQDLT
                     KTEILKTPQFSRFGGLVSIIKNFGGKELYQKAVKGLEKMIYSE"
     gene            complement(5987..6880)
                     /gene="psd"
                     /locus_tag="PXC99_001434"
     CDS             complement(5987..6880)
                     /gene="psd"
                     /locus_tag="PXC99_001434"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251643.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDL5417886.1"
                     /translation="MQLKKYPVPTYFQRVKIALHYLLPQLAITRAAGWLAEQKWGVVT
                     HLIIKLFAKQYKVNLSEAKKTEPSDYATFNEFFIRELKENARPINQDPNTLCLPAEGK
                     VSESGEISDNRLLQAKGHHFTLETLLANDEEMAAKFKDGTFITTYLSPTDYHRVHMPC
                     DGTLRKMIYVPGELFSVNPFLAEHVPNLFARNERVICEFDTAFGPMLQILVGATVTAS
                     MSTVWAGVINPPRADEVVVWNYETEGEKAIKLQKGEEMGAFRLGSTVINLFPKGKVHL
                     NPALIAGMQTRMGEELGRIIN"
     gene            complement(7045..7383)
                     /locus_tag="PXC99_001435"
     CDS             complement(7045..7383)
                     /locus_tag="PXC99_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HDL5417887.1"
                     /translation="MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQI
                     TNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRTKNGNFKNIEQLAEVSGIGQATV
                     EKNRANIILE"
     gene            7676..8995
                     /locus_tag="PXC99_001436"
     CDS             7676..8995
                     /locus_tag="PXC99_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="opacity-associated protein A"
                     /protein_id="HDL5417888.1"
                     /translation="MTQNNFRKEPVFGESSVTSQDAEATKTDTAQAPYVSLRSTKAPG
                     HTFTPIMKRPDAKVEDHTADVFSAKQAKEFQFTPSSEATEAVEPDNTIHSVEESVSTA
                     SFNAVEAQENVEKEVVKPAPESFTTERIIPNAATAAAAATAAAAATKTKEIKAKMPPK
                     TRRLLLVALLALALLVLFFLLKPSTPETVEELQSQQGGSLPIEFRPVDEAEAKRAEEQ
                     ARAEQEAAEAAKAQEQAQAAQQESVTVAPAQTEQTMAKPSQDSQSQTQSQAVVEQPVA
                     VKPVENKPVVAQPAIKPKTENSVVFQPETTVKQQPKAPAKTEVKTERATLAAKETAKT
                     AAKPVEKAPTKTEAVKAAPAAESANAVATKTMTVPKGVSLMQVFRDNNLNISDVNAMS
                     KVNNVVSNLKVGERVTVRLDKNNRVVEMSIGSGGKFTRQANGSYTFK"
     gene            9113..9475
                     /locus_tag="PXC99_001437"
     CDS             9113..9475
                     /locus_tag="PXC99_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MliC family protein"
                     /protein_id="HDL5417889.1"
                     /translation="MLVACSTVVTPVEQIHQVQKEKESVKKVTKLIAQAPKVSLYRCE
                     NDKKVEVERQGRTKKALKKEIVTVSYQGTTHQLSPSVTRDGKKYTNIRWTWHETRSGK
                     AFLYNNTKKTLAANCIKQ"
     gene            9586..10623
                     /gene="waaF"
                     /locus_tag="PXC99_001438"
     CDS             9586..10623
                     /gene="waaF"
                     /locus_tag="PXC99_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HDL5417890.1"
                     /translation="MNILVIGPSWVGDMMMSHALYQQLKIQYPNCQIDVMAPDWCCPL
                     LARMPEVRNAISMPIGHGSFRLCERYRLGKSLRNQYDMAIVLPNSLKSAFIPLFAKIA
                     RRRGWKGESRYFFLNDLRSNKNDYPMMVQRYVALAFEKATVPTAQQLPIAYPYLTTDS
                     EQIEQTKAKFEKQLAYAENRPAIGFCPGAEFGPAKRWPHYHYAILAKMLIEQGYSVRL
                     FGSKKDEAAGEQIRLALPENLQRYCLNLAGQTDLNQAVDLIADCNAVVSNDSGLMHIA
                     AALNKPLVALYGPTSPQYTPPLSQNAEIMRLIEGGLIKIRKGEGAEGYHQSLIDIQPE
                     MVMDKLAELLV"
     gene            10690..11649
                     /gene="rfaC"
                     /locus_tag="PXC99_001439"
     CDS             10690..11649
                     /gene="rfaC"
                     /locus_tag="PXC99_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase RfaC"
                     /protein_id="HDL5417891.1"
                     /translation="MKILIVKTSSMGDVLHTLPAITDMQNAIPDLKVDWVVEENFTEI
                     PAWHSAVNKVIPVAIRRWRKNLCQRQTWVEWQQFLKQLKSEQYDAVIDAQGLIKSAVL
                     VTRQAKGKKFGYDKNSAREGLSSLFYDETFNIPYQQHAVERIRKLCAKSLGYALPTER
                     GDYCIAQHFAKNPQKTTAYIMLIHATTRADKHWQEAYWAELIQALDKHNLAVRLPWGN
                     QAEKERAERLASVANNAKVLPKMSLTDIATQLAGAAAVVSVDTGLSHLAAALDKPNVI
                     LYGATDPKLIGAYGQNQFYLKADKMENITSSQVLEKLLPLINK"
     gene            11770..12144
                     /gene="rpsL"
                     /locus_tag="PXC99_001440"
     CDS             11770..12144
                     /gene="rpsL"
                     /locus_tag="PXC99_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005306278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HDL5417892.1"
                     /translation="MATINQLVRKPRVKKVVKSNVPALEACPQKRGVCTRVYTTTPKK
                     PNSALRKVCRIRLTNGFEVTSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGAL
                     DCAGVKDRKQGRSKYGVKRPKA"
     gene            12275..12745
                     /gene="rpsG"
                     /locus_tag="PXC99_001441"
     CDS             12275..12745
                     /gene="rpsG"
                     /locus_tag="PXC99_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HDL5417893.1"
                     /translation="MPRRRSIEPRKILPDPKFGSELLAKFINVLMVDGKKSTAEKIVY
                     GALETLTQRSGKEALEAFEIALENVRPTVEVKSRRVGGSTYQVPVEVRPTRRNALAMR
                     WIVEAARKRGDKSMALRLANELSDAADNKGSAVKKREDVHRMAEANKAFAHFRW"
     gene            12847..14949
                     /gene="fusA"
                     /locus_tag="PXC99_001442"
     CDS             12847..14949
                     /gene="fusA"
                     /locus_tag="PXC99_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020455498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HDL5417894.1"
                     /translation="MARTTPISLYRNIGISAHIDAGKTTTTERILFYTGVSHKIGEVH
                     DGAATMDWMEQEQERGITITSAATTAFWSGMSQQYPQHRINVIDTPGHVDFTIEVERS
                     MRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRTGANFLRVVEQIKT
                     RLGGNSVALQLPIGAEDSFKGVVDLIKMKAINWNEADQGMTFTYEDIPADMLEACEEH
                     RAMLVEAAAEASEELMEKFFSGEELTEDEIKAALRQRVLAGEVIPVCCGSAFKNKGVQ
                     AMLDAVIDYLPAPTDIPAIKGINEDETEGERHASDDEPFASLAFKIATDPFVGNLTFF
                     RVYSGVINSGDTVYNSVKQKRERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVGTG
                     DTLCAIDAPIILERMEFPEPVISVAVEPKTKADQEKMGLALGRLAQEDPSFRVHTDEE
                     SGETIISGMGELHLDIIVDRMKREFKVEANIGKPQVSYRETIRTRVNDVEGKHAKQSG
                     GRGQYGHVVIDLYPLDAEGPGYEFVNEIKGGVIPGEYIPAVDKGIQEQLKSGPLAGYP
                     VVDLGVRLHFGSYHDVDSSELAFKLAASLAFKAAFAKASPVLLEPIMKVEVETPPDYV
                     GDVIGDLSRRRAMVNGQEANEFVVKINAEVPLSEMFGYATDLRSQTQGRASYSMEPLK
                     YAEAPKNVADAIIEARRK"
BASE COUNT         4441 a         2923 c         3158 g         4486 t
ORIGIN      
        1 gcagtttttt tgtttttttt gatctttcct tctgcaatca agcggtcttt ttctgcttgg
       61 attttgcaaa ggagttcgct tgccggttca tcatttggat cttgtggaac gagcttgcct
      121 tggattgcta gttgtaggat tgcgtttttt agctgttggg ctttcatttt ttattctcaa
      181 taatcggttg ttatttctta aagtatcttt gattacggtg ttttgggttt tctgggaatt
      241 gcatttcgat cacaccaagc gttagtgcag gttttaaata ctgcatacgg aaatgcttat
      301 catcttttaa cctgagtttt ttcataattt ctttgctctt catcggctca agcaacactg
      361 aaagtaagcg atttacttcg ggggtaattt gtttgctttg ttctggggta attgtttgac
      421 ttgcttcact ttgcttttct tcgggggggc gcccttactc tcactagctt tatcaagttg
      481 gtcgaaaggt ggattaaaat aatcatcttg tgatttctct gtgattatcc attctaaatt
      541 cactagggta tagagttgtt ttctcggact ccccgaactg gttagtaagc ctttttcttt
      601 cagtcgtgct agtgccaaag taatatttct gcgtggatat tggggcagtt tttgtgctaa
      661 ttctgcaaac attgctttac cttgattgaa ggcgataaag agtaagcaat ctttttgaat
      721 aggctgtaac tcagagaaat tttcgccaaa gcaagcggta aatttttcct caaaatctgc
      781 aatcatacct gattgaaaag ttaaggtgag tttagtgtaa tcaatttcac tttctaaaag
      841 cggtgaattg aaatttcggc tttgccaata tgaataaata tcccgaacgc cttgtccttg
      901 tcgctcacat agccctaaac ggtggaataa gttatgaata atagaattac ggcattccga
      961 tctttgccct gcaatagccg tgggaatatc aaccaacatt actcctgcat tttcaaaaat
     1021 cagtttgtta tctttggttt taatgacttt tagatggcga acattgttaa agtaatctgc
     1081 gtgagtaatt gcattgatta gagcttcccg tagcccgtca gtaatttcat tttcctcagt
     1141 acgggttaaa ttatctaatt tgaaatgttt atctttacca agctcttgaa taagtggcac
     1201 aattttcaag taaaattcaa agagattgcc ttcttcaaga tcaaaatcgg taatccgtaa
     1261 tgtatagcgt tttacatcac cagcttcttc gtaatattca aaaaagaagt ggggaaatat
     1321 gcttgtaatg gcatagtgct taccaaacat caataagcct gcattggtaa tgccctcgct
     1381 attctgtgct aaatcttttt tataagcccc aatttcttgc agcaatttct catcggataa
     1441 cgtaagtaat tttgatgtgc tgttatgggc tttcagcaga tttctgtatt tatccaatgt
     1501 gcttaaactg atatcatcaa tagaagcata aggcacaatt ctcccatcag catctttttg
     1561 gctatagctt gaaatgaaag aacgcagttc agaggaggtg agtttatgat cgcctgaatt
     1621 taaacgaaca taagaaagtc gataatcacc atttaaatgg ataggacggt ctaaaatatc
     1681 agctgctttc acataaattg caatcacgct tttattttca acttgaaaga ttttcacatc
     1741 attatccttt aataaggatt tactgacttt ttcactacga gattgggaaa ataattcatc
     1801 aatgacttta tcaggatcat taacaccaga aattagcagt tcaggaaaat gtccttgttc
     1861 attttccttt attcctaata aaataaagcc accattgctg tttgcaaaag ccgaataagt
     1921 atgccaaaga tcttttggca cactattttt tgcctcttta tattcaattt ctgccttttc
     1981 tcggataaat tgctgatgtg caatcatttt ttcgatatgt tcccaagtca gcattttatg
     2041 ctcctattac agtttaatgc ctaaaatatc ggtaatttct gctagaatct tatcaatatc
     2101 agcattgtaa gcggtgcgtt ttcgctgata atctgcaatt agttcatcag gcggaaggat
     2161 ttcctcttct tcgtgaggaa agccacataa atcgaggttg tattgacggt cggacatttc
     2221 ctttaatgta aaacttttcg ctttgtcaaa cccttcgact tcaatcactt ggcgatttcc
     2281 ccaccattca acaacttcgt tgaaatgttc caatttcatc ggtttagttt tggagaaatt
     2341 tttataaccc tgtggcatat caaggcgata aacccaagtt tcacgggttg gctcggtttt
     2401 atcaaaaaac agaatattag tcgtaatcga ggtataaggg gcaaagacac tatgcggtaa
     2461 gcggataatc gtatgcagat taaactcttc taatagcttt ttcttaatcg caactttggc
     2521 attatctgtg ccgaacaaaa atccgtcagg cagcaccacc gcagcccgtc cattctgttt
     2581 taggcggtac ataattaccg acataaacag atcagcggtt tcactgctct gtaaagccgt
     2641 agggaaattc tttttaattt gctcaatttc tgaacctccg taaggtggat tcatcaaaat
     2701 cacatcaaat ttatcatttt cggtgtaatc tttgaccgat ttttctagag cattatcgtg
     2761 atgtacattc ggattatcaa tatcgtgcaa caataaattg gtaatacaaa gcaggtgagg
     2821 aagggctttt ttctcaatgc catacacaga attattgaat aaagtgcggt cagaaagggt
     2881 ttgaatttga ctttccaata cctttaacgc cgaagttaaa aaaccacccg tcccacaggc
     2941 aaaatcggca atgcgttcgc caagtttcgg tttgattgct tgtaccataa aatcggttac
     3001 agcgcgaggg gtataaaatt cccctgcatt acctgcactt tgtaaacttt tgaggatatt
     3061 ttcataaata tcgccaaagg cgtgtcgttc ttggtaatgg gcaaaatcaa tttcatcaat
     3121 gatattgata acctgacgta ataacacccc atttttcata tagttgttat tatcttcaaa
     3181 agcagcacgg ataatccgtt ggttcatcgg cgtatcggct gaaataggca gattttttaa
     3241 agtcgggaaa agttcgttat tgacgaaaga gagtaattca tcaccagtca tcgctttgcc
     3301 gtctttttta tcttccgccc aattttgcca gcgtaaaaaa ttcggcaaaa ttgagtgata
     3361 ttcatcgttt tccagttccc actcttgttc tttagcatcg taaattttca agaataagat
     3421 ccagacgatc tgttcaatgc gttgggcatc accgttaatc cctgcatcgt tacgcattac
     3481 atcttgcagg cgttttacta tgttgttgag gctcattgtg atccttgttt atctgtaaaa
     3541 ttttgttgta aaataaccgc ttgttattcc gaataaatca tcttttctaa gccttttacc
     3601 gctttctggt agagttcttt accgccgaaa tttttaataa tagacactag acctccaaaa
     3661 cggctgaatt gcggtgtctt taaaatttcg gttttagtca gatcttgatt gccggatttg
     3721 acatattcat taagcagcaa ccctaaaact tgctggtttt cgggcgaata ctgctccaca
     3781 tagccacttt gtttcacttt ttctgctcgt tcggttttag tcagtggttt tttgccaaag
     3841 gagatgtggc ttaatacatc aaagtcttca acatcgtggc tgaattggcg tgtttggcga
     3901 agggctgcca gccattttgg atcggtgtaa aatttcgaga aaatttcacc gcttgttgtc
     3961 cattgctgtt ggaactgttc gtaactgccg aactcttttt gcatttcccg ttttgagaac
     4021 agatcaatat cttcagaaac cagctcgccc tgctcattca gatattggac tttctcgtct
     4081 aaaatgcgta atttgagtgt gccgaaatcg acaactaccg ggattttata tggctttagc
     4141 tcggggtctt taatgatgtc cttatcactg ggtttaggaa gcggttgttc gacaagtggc
     4201 ttattttccg gtacatctaa aatcaccacc ggctcaccat caaatgccgg atcagcaaac
     4261 aggcgagtaa cgcctcgaaa atctaaaatg gtgaaaaatt ctttgccgaa atcagggcga
     4321 agacgagtgc ctcgtccgat aatttgttta aattccgtca ttgattgaat gtttgcatca
     4381 agtacaacca gcttacaggt tttgctatct acacctgttg tcatcaattt agaggttacg
     4441 gcaatcacag ggtaatcttt cccttcattt gctacatcac aaaattcttc taaatcaacg
     4501 cctttgcctg attggtcgcc tgtaatttgg cagacatatt tggaattgtg tttcaacata
     4561 tcggcattga ggcgtgaaag ctctgccacc attcgctctg catggttgat gttggcacag
     4621 aagactattg ttttctgcaa gcggtcggtt ttgcgtaaaa attcgcaaat tctctccgca
     4681 accaagcggg tgcgatcatt tagcacaatg ttgtaatcga aatctttgac tgtatagagg
     4741 cgatcttcaa tctcattacc ttgatgatct tttaaacctt tggttggtcg ccagcctttt
     4801 aaatcacagt ccagatcaac acgaatcact cgataagggg caagaaagcc gtcttcaata
     4861 ccttgtttga ggctataggt ataaatcggc tcgccaaaat aggtaatgtt gctggcatca
     4921 tcggtttctt tgggggttgc agtcataccg atatgggtgg cgtccttgaa atacttcaaa
     4981 atagcacgcc agtcagaatc ttcttttgct gaaccacgat gacattcatc gatcacaata
     5041 agatcaaaga aagagggttg gaactgctta aacagttcgt tatcggtttc accgtcaagc
     5101 tgttgataaa gtgcaagata gacttcataa gcactgtcga gctttttatt gctgactttc
     5161 accattttgt ctttaaacgg tttgaagtct tgcatcattg gctgatcgac tagtacattg
     5221 cgatcggcaa gaaataaaat tttctttttc gcaccactgg tttttaaacg atggataatt
     5281 tggaaagccg tataggtttt acccgtgcct gttgccatta ccaataaaat cctctgctga
     5341 ccttttgcta cagcttcaac agtacggtta atcgcaattt cttggtagta acgaggctct
     5401 ttaaaggtgt cagtgctact ggtgtaataa ggctgttgaa taattttcag ctcttcggtg
     5461 gtatattgtt tcgcccaacg ttggtggagt tcgtcgggag taggaaatgc tgacatcgga
     5521 agggttcgtt gtacgccagt gataaaatcg tgttccacaa actcatcacc atttgagcta
     5581 tatgcaaaag ggacatcaag caatcgagcg tatgtcattg cttgctgtaa gccgtgtcgg
     5641 gaagagtgat ggttatcttt ggcctcgacc acggcaattt tttgatttgc ggaagtatag
     5701 agcagataat caacccgttt tgcttcgatg cgtttagttt gcgtcgtttt tggatcaaca
     5761 actacttgcc catctgtaaa tcgtttattg gttttaaatg tgtactcttc gccaatttgt
     5821 ctatccgacc atcctgcatt tctaattgca ggagagatta atcgagagcg aatttcttgc
     5881 tcgttcatct gctttaattc ttgaagtgtg tacatatttt tccttccgat aagagtttct
     5941 tatcggaaga ttatagcaaa cagtttaggt aaaattaact caggatttaa ttgataattc
     6001 tacccaactc ttcccccatt cgggtttgca ttcctgcaat aagtgcaggg ttgagatgta
     6061 ctttaccttt cgggaagagg ttaattacgg ttgagcctaa acggaaagct cccatttctt
     6121 cgcctttttg gagtttgatg gctttttcgc cttcggtttc gtaattccaa actaccactt
     6181 catcagcgcg aggcggatta attacgccag cccaaaccgt actcatactt gcggtaaccg
     6241 ttgcaccgac caaaatctgt agcattggtc cgaatgcggt gtcaaattca caaatcacac
     6301 gctcattgcg agcgaataag tttggaacgt gttcggctaa aaacggattg acggagaaca
     6361 attcgcccgg cacataaatc attttacgca atgttccatc gcacggcata tgtacacgat
     6421 ggtaatcagt tggcgataag taggtggtaa taaatgtgcc gtctttaaat tttgccgcca
     6481 tttcttcatc atttgccaat aaggtttcta gcgtaaaatg atgccctttt gcttgtaata
     6541 aacggttatc cgaaatttcg cctgattcgc tgactttacc ttctgccggt aagcaaagtg
     6601 tatttggatc ttgattaatc gggcgtgcgt tttcttttaa ttcacggata aaaaattcat
     6661 taaaagtagc ataatctgac ggctcggttt ttttagcttc agataaattg actttatact
     6721 gttttgcaaa cagtttgatg ataaggtgag taactacgcc ccatttttgc tctgctaacc
     6781 aacctgccgc acgggtaatt gccagttgtg gcagtaaata gtgcagagcg attttcacac
     6841 gttggaaata ggttggaact ggatattttt ttaattgcat tgcgttttcc ttttatttaa
     6901 aaacgagaat ttgcgtttaa ttgggggcga agtatagcaa atacaatgca aaatagataa
     6961 aaaatcttta aggtgttgaa gtggctacaa agaaaaaaac agataggggc tttgtaggaa
     7021 ttccacttca acaatttggt tgtcttattc taaaataata ttggctcgat ttttttctac
     7081 cgttgcttgc ccaattccgg agacttcagc aagttgctca atgtttttaa aattgccgtt
     7141 tttagtacgg taatcgacaa tcgcttgagc ttttttctgc ccaattccca ctagcttgtc
     7201 ttgcaattca gcagcactag cagtattgat atttaccgca ttagcgttgg tgatttgtgt
     7261 ttgctgtacg ggttgagtga ctgcattttg ttcaacaggc attgtagttg gcggtgtttg
     7321 ggcaaaagcc attgcattta agccaaacaa gaatgttaga ccaagttgtt tgattttctt
     7381 cataggattt ccttattagt tgttgaaagg tcgaaaggaa gattaagagg gaataaaata
     7441 gaactcaacc ggcaaaaata aatttttcga cacagatcga aaaaatagaa aatggctaaa
     7501 cttctagacg tgcatttggt ctgaaattca atgaaagtaa atagatttgc aaaaaattag
     7561 gcaaaaatga ccgctagttg cgtaaattta gttaaataaa ttcaaatagc ggctgaattg
     7621 ctttagaata tcgccatttt tatactcatt aacaacgcta ttatttggaa ttaatatgac
     7681 acaaaataat tttcgcaaag aaccggtttt tggtgaatct tcggttacct ctcaagacgc
     7741 tgaagcaacc aaaacagata cagctcaagc cccttatgtt tcgttgcgtt caaccaaagc
     7801 accggggcat acgtttaccc caattatgaa aagacctgat gctaaagtag aagatcatac
     7861 ggctgatgtc ttttcggcta agcaggcaaa agaattccaa tttactccaa gttcagaagc
     7921 tacagaagca gtagagccgg ataataccat tcattcggtt gaagaaagtg tatcaaccgc
     7981 atcttttaac gcggttgaag cacaagaaaa tgtggaaaaa gaagtggtta aacctgcacc
     8041 cgagagtttc actactgagc gtattattcc aaatgcggca acagctgccg cagcagccac
     8101 tgcggcagct gcagccacta aaaccaaaga gattaaagct aaaatgccac ctaaaacccg
     8161 ccgtttatta ttagtggcat tgttggcgtt agcattattg gtactgtttt tcttgttaaa
     8221 accaagtacg ccggaaactg tcgaagagct acaatctcag caaggtggta gcttgccgat
     8281 tgaattccga ccggttgatg aagctgaagc gaaacgtgcg gaagaacaag ctcgtgcaga
     8341 acaagaagcc gctgaagctg caaaagctca agaacaagct caagccgctc aacaagagtc
     8401 tgtaacagtt gctccagccc aaaccgagca aacaatggct aaaccgtcac aagatagcca
     8461 gtcgcaaaca caatcacaag cagtagttga gcaacctgtt gcggtgaaac cggtggaaaa
     8521 taaaccggtt gttgcacaac cggcgattaa gcctaaaacg gaaaatagcg tggtgttcca
     8581 acctgaaaca acggtaaaac aacagcctaa agcccctgct aaaactgaag tgaaaaccga
     8641 acgtgctaca ctggcagcaa aagaaacggc aaaaacagca gctaaaccag ttgagaaagc
     8701 tccgacaaaa actgaagcgg taaaagcagc accggctgcc gagtcggcaa atgcggtagc
     8761 aaccaaaaca atgactgtgc caaaaggtgt atcactaatg caagtgttcc gtgataacaa
     8821 tttaaatatc tcagacgtta atgcgatgag caaagtcaat aacgtggtga gtaatttaaa
     8881 agtaggcgag cgagtaaccg ttcgtttaga taaaaataac cgtgtggttg aaatgagcat
     8941 tggctcaggc ggcaaattta cccgtcaagc aaacggtagc tatactttta aataaataaa
     9001 atgaagaaaa agagcaacgc tacaaacgtt gctcttttat ttaaaaagga gataaaggat
     9061 gaatttattt tgcccctctt acaaacttat ctacttaacg ctaagctcag cgatgttagt
     9121 tgcttgtagt acagtggtta cccctgttga gcaaattcat caagtacaaa aggaaaaaga
     9181 gtcagtaaag aaagtgacta aactgatagc acaagcacct aaagtgagtt tatatcgttg
     9241 tgagaatgat aagaaggttg aagttgaacg ccagggacga acaaaaaaag cgttaaaaaa
     9301 ggaaatagtc acagtgagtt atcaagggac aacgcatcag ctttcacctt ctgtaacgag
     9361 agatggtaaa aaatacacta atatccgttg gacttggcat gaaacccgta gtggtaaagc
     9421 atttttgtat aacaacacta aaaaaacgtt agcggcaaat tgcataaagc agtaacaagc
     9481 ggacacaaaa agtatcgctt tttgaacgtt ggctttgcca acggcagcga agctgtgaac
     9541 aatccttaca aggattgtga ataaattttt aagagaattt tgcaaatgaa tattttagtt
     9601 ataggaccgt cttgggtggg tgatatgatg atgtcgcacg cactttatca acagcttaaa
     9661 atacagtatc cgaattgcca aattgatgta atggcacccg attggtgttg tccgctttta
     9721 gcccgtatgc ctgaggtgcg taatgcgatt tcaatgccga ttggacacgg ttcatttcgt
     9781 ttgtgtgaac gctaccgact cggaaaatcc ctgagaaatc aatatgatat ggcgattgta
     9841 ttgcctaatt cattaaagtc tgcctttatt ccactgtttg cgaaaattgc gagacgtcgt
     9901 ggttggaaag gggaaagtag atattttttc ttaaatgatc ttcgcagtaa taaaaacgac
     9961 tacccaatga tggtgcaacg ctatgtagcc ttggcgtttg aaaaggctac tgttccaacc
    10021 gcacaacagt tgccgattgc ttatccatac ctcacaactg atagcgaaca aattgagcag
    10081 accaaagcga aatttgaaaa acagttggct tatgcggaaa accgtcctgc catcggcttt
    10141 tgtccagggg ctgaatttgg accggcaaaa cgttggccgc attatcatta tgcaatattg
    10201 gcaaaaatgt tgattgagca aggctattcg gtacggttat ttggctcgaa aaaagatgaa
    10261 gccgccggtg agcaaattcg cttggcatta cctgaaaatt tacaacgcta ttgcctgaat
    10321 ttagccgggc aaaccgattt aaaccaagcg gtagatttga ttgcagattg taatgcagtc
    10381 gtgagcaatg actccggctt aatgcacatt gccgcagcac taaataaacc gctggtcgcc
    10441 ttatatggac cgaccagccc acaatatacg ccgccgttat cccaaaatgc cgagatcatg
    10501 cgcttaattg aaggcggttt gattaaaatc cgcaaaggcg aaggggcaga gggctatcac
    10561 caaagtttaa ttgatattca gcctgaaatg gtgatggaca aattagctga actgttagtt
    10621 taaatggata acaagcggtt gaatttgcca attttttgca aaaaaagacc gcttgtttgt
    10681 ttataaaaga tgaaaatttt aatcgttaaa acctcatcaa tgggagatgt attacatacg
    10741 cttccagcca taaccgatat gcaaaatgct attcccgatt taaaagtaga ttgggtggtg
    10801 gaggagaatt ttaccgaaat tcctgcgtgg cattcagcgg taaataaagt aattccggtg
    10861 gctattcgcc gctggcggaa aaacctttgc caaagacaga cttgggtaga atggcagcag
    10921 tttttaaaac agctaaaaag tgagcagtat gatgcggtaa ttgatgctca agggctgatt
    10981 aaaagtgcgg tgttagtaac tcgccaagcc aaaggcaaaa aatttggcta tgataaaaac
    11041 tctgcccgag aagggttaag tagtctgttt tacgatgaaa cgtttaatat cccctaccaa
    11101 caacacgctg tagaacgcat cagaaaatta tgtgcaaaat cattaggtta tgctttgcca
    11161 accgaacggg gcgattattg cattgcacaa cattttgcaa aaaatcctca aaaaacgacc
    11221 gcttacatta tgctgattca cgccactacc cgagcggata aacattggca agaagcctat
    11281 tgggcggagt tgattcaagc gttggataag cacaatctgg cagtcagatt gccttgggga
    11341 aaccaagccg aaaaagaacg ggcggagcgt ttagcgagtg tggcgaataa tgctaaggta
    11401 ttgccaaaaa tgagcttaac cgatattgct actcaacttg cgggagcagc ggcagtggtg
    11461 tcggtggata ccggcttgag ccatttggcg gctgcgttag ataagccaaa tgtgatttta
    11521 tatggggcaa ccgatccaaa acttatcggg gcttacgggc aaaatcagtt ttatctaaaa
    11581 gcagataaaa tggaaaatat tacctcttca caagtgctag aaaaattact tccattgatt
    11641 aacaaatgat cattgttgtt ctcttactgt gcttgacttt tatccacgtt caatttagaa
    11701 ttcaccgtcc tttcgtgtga aaggatgttt ttaattttat ttttaataat tttaactgga
    11761 gcttttttaa tggcaactat caaccagcta gtacgcaaac cgcgtgtgaa aaaggttgta
    11821 aaaagtaacg ttcctgcatt agaggcttgc ccgcagaaac gtggcgtgtg tactcgtgta
    11881 tacactacta cacctaaaaa accgaactca gcattacgta aagtatgtcg tattcgttta
    11941 acaaatggct ttgaagtaac ttcatacatc ggtggtgaag gtcacaacct tcaagaacac
    12001 agtgttgtat taatccgtgg tggtcgtgtt aaagacttac cgggtgttcg ttaccatact
    12061 gtacgtggtg cacttgactg tgcaggcgtt aaagatcgta aacaaggtcg ttctaaatac
    12121 ggcgttaaac gtcctaaagc ttaatggttc tccgttgagt aaggccaaac gtctaaattt
    12181 taatatttaa accataaact ccagtcaaga tgccttaagg cagattagat gagttttgga
    12241 tatcctgaag atttaatata cggagaaatt tccaatgcca cgtcgtcgta gtattgaacc
    12301 acgcaaaatt cttccagatc cgaagttcgg ttcagaatta cttgcaaaat ttattaacgt
    12361 gttaatggta gatggtaaaa aatctactgc agaaaaaatc gtttacggtg cattagaaac
    12421 tttaacacaa cgttctggta aagaagcgtt agaagctttc gaaatcgcat tagaaaacgt
    12481 acgtccaact gttgaggtta aatctcgccg tgtgggtggt tctacttacc aagttcctgt
    12541 agaagttcgc ccaacccgtc gtaatgcttt agcaatgcgt tggatcgtag aagccgctcg
    12601 taaacgtggt gacaaatcaa tggcattacg tttagctaac gaattatcag atgcagcaga
    12661 caacaaaggt tcagcagtga agaaacgtga agacgttcac cgtatggctg aagctaacaa
    12721 agcgtttgct cacttccgtt ggtaatcgtt taagcaaact tatcaaaggc ttcatctcag
    12781 tttgcggtga agccttaccc ttattaagaa ttttaattta aaccccaaac aaggtaataa
    12841 ataaaaatgg ctcgtacaac ccctatttca ctttaccgta acatcggtat cagtgcgcac
    12901 atcgatgcgg gtaaaacaac tactacagag cgtatcttgt tctatacagg tgtaagtcac
    12961 aaaatcggtg aagttcacga tggtgctgca acaatggact ggatggaaca agaacaagag
    13021 cgtggtatca cgatcacatc tgctgcaaca acagcattct ggtctggtat gtcacaacaa
    13081 tatccacaac accgtatcaa cgttattgat actccgggac acgttgactt tactatcgaa
    13141 gtagaacgtt caatgcgtgt acttgatggt gcggtgatgg tttattgtgc agttggtggt
    13201 gttcaaccac aatctgaaac tgtatggcgt caagctaaca aatataaagt gccacgtatc
    13261 gcgttcgtaa acaaaatgga ccgtacaggt gcaaacttct tacgtgttgt tgagcaaatc
    13321 aaaacgcgtt taggtggtaa ctcagttgca ttacaacttc caatcggtgc agaagacagc
    13381 ttcaaaggtg ttgttgattt aatcaaaatg aaagcaatca actggaacga agctgatcaa
    13441 ggtatgacct tcacttatga agatattccg gcagatatgc ttgaagcttg tgaagaacac
    13501 cgtgcaatgc ttgttgaagc agcagctgaa gcttctgaag aattaatgga aaaattcttc
    13561 tctggtgaag aattaactga agatgaaatc aaagcagcat tacgtcaacg tgtattagca
    13621 ggtgaagtaa tccctgtttg ctgtggttct gcatttaaaa acaaaggtgt acaagcaatg
    13681 cttgatgcgg taatcgatta cttaccggca ccaactgata ttcctgcaat taaaggtatc
    13741 aatgaagatg aaactgaagg tgagcgtcac gcaagcgacg atgagccatt tgcttcatta
    13801 gcattcaaaa ttgcaacaga cccattcgta ggtaacttaa ccttcttccg tgtttactct
    13861 ggtgtaatta actctggtga tacagtttac aactcagtaa aacaaaaacg tgaacgtttt
    13921 ggtcgtatcg tacagatgca cgcaaacaaa cgtgaagaga tcaaagaagt tcgtgcgggc
    13981 gatatcgctg cagcaatcgg tttaaaagat gttggtacag gtgacacatt atgtgcaatc
    14041 gatgcaccaa tcattcttga gcgtatggaa ttccctgagc cggtaatctc tgttgcggtt
    14101 gaaccaaaaa ccaaagctga ccaagagaaa atgggcttag ctttaggtcg tttagcacaa
    14161 gaagaccctt cattccgtgt tcacacagat gaagaatctg gtgaaacgat catttcaggt
    14221 atgggtgagt tacacttaga catcatcgtt gaccgtatga aacgtgagtt taaagtggaa
    14281 gcaaatatcg gtaaaccaca agtatcttac cgtgaaacta tccgtactcg tgttaatgat
    14341 gttgaaggta aacacgcaaa acaatctggt ggtcgtggtc aatatggtca cgttgtgatc
    14401 gacttatacc cattagatgc tgaaggtccg ggttatgagt ttgtaaacga gatcaaaggt
    14461 ggtgtaatcc ctggtgaata cattcctgcg gttgataaag gtatccaaga acagcttaaa
    14521 tctggtccgt tagcaggtta cccggtagta gatttaggtg tgcgtttaca cttcggttca
    14581 taccacgatg ttgactcatc tgaacttgcg tttaaacttg ctgcatcatt agcatttaaa
    14641 gcggcgttcg caaaagcaag cccggtatta cttgagccaa tcatgaaagt ggaagttgaa
    14701 actccaccgg attacgtggg tgatgtaatc ggtgacttaa gccgtcgtcg tgcaatggtt
    14761 aacggtcaag aagcgaacga gttcgttgtt aagatcaatg ctgaagttcc actttcagaa
    14821 atgtttggtt atgcaacaga cttacgttca caaactcaag gtcgtgcatc atactctatg
    14881 gaacctttaa aatatgctga agcaccgaaa aacgttgctg atgcaattat tgaagctcgt
    14941 agaaaataat ttgtttaacc tgagccatag caatagggct atggctcatt ttttaggaag
    15001 atattaaa
//
LOCUS       DANLVT010000056        14847 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.056, whole genome shotgun sequence.
ACCESSION   DANLVT010000056 DANLVT010000000
VERSION     DANLVT010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14847)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14847)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14847
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.056"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(81..569)
                     /gene="sixA"
                     /locus_tag="PXC99_001443"
     CDS             complement(81..569)
                     /gene="sixA"
                     /locus_tag="PXC99_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohistidine phosphatase SixA"
                     /protein_id="HDL5417895.1"
                     /translation="MNIWIMRHGEAGFNASSDAARCLTDNGIKNTISQGKWLGEHLAN
                     QQIQLDKILVSPYLRAQQTLENVLIGMQAVNFPQHFTNLIESWDEVTPDGNPHTVESY
                     LHFLREEGAKNILLISHLPLVFDLVQILTNNQSNVQFPTSTIAEINWVKTKAELIRVK
                     HT"
     gene            696..2135
                     /gene="pyk"
                     /locus_tag="PXC99_001444"
     CDS             696..2135
                     /gene="pyk"
                     /locus_tag="PXC99_001444"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HDL5417896.1"
                     /translation="MSRKLRRTKIVCTMGPATDRGNTLEKIIAAGANMVRMNFSHGIP
                     EDHIERANKVREIAARLGRHVAILGDLQGPKIRVSTFKDGKIFLNIGDKFTLDADLPR
                     GEGHQEAVGLDYKNLPNDVVPGDILLLDDGNVQLKVLEVEGVKVHTEVTVGGPLSNNK
                     GINKLGGGLSAPALTDKDKEDIKLAAKIGVDYLAVSFPQSSADLHYARELAKEAGLEA
                     KIVAKVERAETVATEEAMDDIILGADVVMVARGDLGVEIGDAALVGVQKRLIRRARKL
                     NRVVITATQMMESMIKKPMPTRAEVMDVANAVLDGTDAVMLSGETANGDYPVETVKSM
                     AEVCLGAETMPSINISRHRMEGTFKSIEEAVAMSAMYTANHLEGVSAIISLTHSGETA
                     KLTSRISSGLPIYAMSRNQKALNLCALYRGVTPVYYNEDSRTMEGAKKAIAQLKEQGY
                     LLTGELVLLTHGDELKAGGTNTCRILRVE"
     gene            2231..3268
                     /locus_tag="PXC99_001445"
     CDS             2231..3268
                     /locus_tag="PXC99_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL5417897.1"
                     /translation="MHNKLLSICILRLSAIGDVCHTLAVIQAIQRKYPSAEITWIIGK
                     TEAYLMKDIPNVHLIPYDKKIGWKGIFTLWQKLSHKRFDFLLNLQTAFRASILSLGIK
                     AKKKIGFNQDRAREMQWLFTNQKVEMTDSPHVLDGQMMFAKAIGIMDLSAQWNLPVSD
                     EDLAYGKQFIDFTRKNILIAPCSSKKEKDWLPERYAEIANWLSKQNINVLIAGSPSQY
                     EMETAAKIQQLAPNCTSIAGKTTLKQLAGVIRQVDLVISSDSGPAHIATTQNTPVIGL
                     YAIHNPRRTGPYNDLDKVVSVYDEAILQSYGKPWQQLAWATKAKGKNWMEKITVESVK
                     QKVVETLKITL"
     gene            3308..4366
                     /locus_tag="PXC99_001446"
     CDS             3308..4366
                     /locus_tag="PXC99_001446"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HDL5417898.1"
                     /translation="MNTVFNQDSVHNVNIQDEKVLLTPQELKQEFPLPEHLRNQIERS
                     RKTISDIIHRRDKRQLIVIGPCSIHDPVAALEYGKKLKALSEQVSDKLYIVMRVYFEK
                     PRTTVGWKGLINDPKMDGSFDVETGLRIARKLCLDLAELGLPLATEALDPMTPQYLAD
                     LFSWSAIGARTTESQTHRELASGLSMAVGFKNGTDGDLAVALNAMQSSAQSHSFIGIN
                     QQGQVTLLKTKGNADGHIILRGGKTPNYEKQYVDDCEWVLKQANLPTAIMIDCSHGNS
                     NKDYRRQPLVAENVLEQLLAGNTSIIGLMIESNLHAGNQSSELPFEQMKYGVSITDAC
                     IDWQTTEELLTHFAEKLR"
     gene            4421..5542
                     /gene="tyrA"
                     /locus_tag="PXC99_001447"
     CDS             4421..5542
                     /gene="tyrA"
                     /locus_tag="PXC99_001447"
                     /EC_number="1.3.1.12"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate mutase/prephenate
                     dehydrogenase"
                     /protein_id="HDL5417899.1"
                     /translation="MNPLAPLREQIDQVDQQLIALLSERLALVAEVGKVKSEHGIPVY
                     APERETAMISARRSEAEKQGIPADLIEDVLRRIMRESYANENKHGFKRVNSDIQKIVI
                     VGGKGKLGGLFGNYLTLSGYNVEALGRDDWDNAEQILANADVVIVCVPIANTLATIER
                     LQSYLTENMILADLTSVKHQPLQKMLEVHNGAVVGLHPMFGPDIASQAKQVVACCHGR
                     FPERYQWLLEQIKIWGAKIEEIEAAAHDNAMTYIQALRHFSTFAFGLHLSRQPVQLSQ
                     LLALSSPIYRLELAMIGRLFAQDGSLYADIIADKPENLATIETLKESFEQGLDFFKRN
                     DKAGFIKAFEEVHHWFGDYSEQFLKESRVLLQQAHDSRK"
     gene            complement(5733..6818)
                     /gene="recF"
                     /locus_tag="PXC99_001448"
     CDS             complement(5733..6818)
                     /gene="recF"
                     /locus_tag="PXC99_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HDL5417900.1"
                     /translation="MALTRLLINHFRNIQHTDLAFSPHFNFLVGANGSGKTSLLESIF
                     YLGHGRSFKSHISNRIIHYDKDDFVLHGKIDEAKHSWSVGIQKFRSGETTLKINGEDG
                     NKIADLAHLLPMQVITPEGLTLLNGGPSFRRAFLDWGLFHQHPDFYAHWNNLRRLLKQ
                     RNSALQQVRSYQELKAWDIELVKTTYAVSEMRAEYAEALRPEIEKTCQFFLPEIEIGL
                     SFHQGWEKGADYAEILAQGFERDKALGYTMIGAQKADFRFKANGLPVEDVLSRGQLKL
                     LMCALRLAQGEHLVAQKQRQCLFLIDDFASELDPTKRELLAHRLRESGSQVFVTAITQ
                     DQLNQMQWQDRSDDCLFTVKNGEIQPQ"
     gene            6958..7287
                     /locus_tag="PXC99_001449"
     CDS             6958..7287
                     /locus_tag="PXC99_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001364632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HDL5417901.1"
                     /translation="MFGKGGLGGLMKQAQQMQERMQKMQEEIAQLEVTGESGAGLVKV
                     TINGAHNCRRIEIDPSLMEDDKEMVEDLVAAAFNDAVRRAEEMQKEKMASVTAGMQLP
                     PGMKFPF"
     gene            7295..7900
                     /gene="recR"
                     /locus_tag="PXC99_001450"
     CDS             7295..7900
                     /gene="recR"
                     /locus_tag="PXC99_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HDL5417902.1"
                     /translation="MQTSPLLENLMEALRALPGVGPKSAQRMAYHLLQRNRSGGVALS
                     KALNEAMSHIGHCKSCRTFTEEEECTICKNPRRQMSGQLCVVEMPEDIQAIEQTGQFS
                     GRYFVLMGHLSPIDGIGPREIGLDLLQQRLEQESFHEVILATNPTIEGDATANYIAEM
                     CRMYNVKATRIAHGVPVGGSLEMVDGTTLSHSFAGRRDIDI"
     gene            7972..8298
                     /gene="grxD"
                     /locus_tag="PXC99_001451"
     CDS             7972..8298
                     /gene="grxD"
                     /locus_tag="PXC99_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005705415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Grx4 family monothiol glutaredoxin"
                     /protein_id="HDL5417903.1"
                     /translation="METIDKIKQQISENPILLYMKGSPKFPSCGFSARAVEAVINCQV
                     PFGYVDILTNPDIRAELPKFANWPTFPQLWVEGELVGGCDIVLEMLQKGELQTLLKET
                     AAKHAA"
     gene            8440..9477
                     /locus_tag="PXC99_001452"
     CDS             8440..9477
                     /locus_tag="PXC99_001452"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HDL5417904.1"
                     /translation="MALKELDWANLGFSYIKTDYRFIAHWKDGKWNEGELTQDNTLHI
                     HEGSTALHYGQQCFEGLKAYRCKDGSINLFRPDQNAERMQRTADRLLMPRVPTELFIR
                     ACKKVVKANQDWLGPYGSGATLYLRPFLIGVGENIGVKAAPEFIFSVFCCPVGAYFKG
                     GLAPSNFITTDYDRAAPMGTGGVKVGGNYAASLLPHELAVEQSSTTRKFADAIYLDPK
                     THTKIEEVGAANFFGITKDNKFITPISESILPSITKYSLLHLAQERLGMEAIEGDVYI
                     DQLDQFAEAGACGTAAVITPVGGIQHKDKFHVFYSETEVGPVTRRLYAELTGIQFGDV
                     EAPQGWIVKVE"
     gene            9504..10052
                     /locus_tag="PXC99_001453"
     CDS             9504..10052
                     /locus_tag="PXC99_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane lipoprotein lipid attachment
                     site-containing protein"
                     /protein_id="HDL5417905.1"
                     /translation="MAKLFANSTACLYLENMKKLIFLGLSALALAGCSSTISNPNQLI
                     GQWQCTIEYDDFNIRTVDNLRFSTNGTMTNQGGIYYPIQKSIFEYSLQQNGRWSVKNG
                     AIVYRIVSESVQRSHRSQIWSELQRDAELQQFEENLFSSLSDSDNNKTVELIITDFDE
                     KEMDIKQEIKGHKAYKGQCIKQ"
     gene            10061..10405
                     /locus_tag="PXC99_001454"
     CDS             10061..10405
                     /locus_tag="PXC99_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDL5417906.1"
                     /translation="MIQRFEVGSRFSEMAIHNGVAYLAGQVPLDDTADAYTQTQQVLA
                     EIDKWLAKANSDKSKILMATVYLKEMADYAEMNRAWDEWVAPNNAPPRAAVEAKLANP
                     NWKVEIVVTAAV"
     gene            complement(10438..12216)
                     /locus_tag="PXC99_001455"
     CDS             complement(10438..12216)
                     /locus_tag="PXC99_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HDL5417907.1"
                     /translation="MSTLDFHFIHRFHQQVQALSHHPALRFMQDEKWSEISWLELQKQ
                     VNNLSYALLANGLAVQEKIAIFAQNMPRWTITDIAAMQIRAVAVPIYATSTTKQLEYI
                     LNDGDIKILFVGDQEQYDQAIEIANNCSLLIKIVAMKDSIDLRDFPIAQHWQDFIKVN
                     QDEAELTKRLNDKCLEDLFTLIYTSGTTGEPKGVMLDYANLAHQLQAHNKALPHIDEN
                     DISLSFLPLSHIFERAWVTYVLYRGAVNCYLEDPQQVRQALSTVRPTLMCAVPRFYEK
                     IYTAVWDKVQQAPIHRRALFKWAIRTAEDNLFGKKSAFFHRLQYIMADKLVLGKLRAL
                     LGGRIRMMPCGGAKLDPSIGLFFQSIGINVKLGYGMTETTATISCWQEKGFNINSTGT
                     LMPDVEVKISEENEILVRGGLVMKGYYKKPEATAQAFTAEGFLKTGDAGELDSEGNLY
                     ITDRIKELMKTSNGKYIAPQYIEGKIGKDKFIEQIAVIADAKKYVSALIVPCFDSLEE
                     YAKKLNIRYQDRLELIKHYEVVRMFEQRINELQKDLASFEQIKKFTLLSQAFSTKMEE
                     ITPTLKLRRKVILERYKQQIEKMYES"
     gene            complement(12442..13011)
                     /locus_tag="PXC99_001456"
     CDS             complement(12442..13011)
                     /locus_tag="PXC99_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005821628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P hydroxylase"
                     /protein_id="HDL5417908.1"
                     /translation="MNQENHKIEDIIRIFNQCFSDEYNTRLERGGNYPIYLPEFMDED
                     GVPSERPYNVILFAHGYYSSALHEIAHWLVAGEARRKLEDFGYWYEPDGRSAERQREF
                     ESAEIKPQAIEWVLATAAGFRYFASADNLSGNPGDNSAFKQAVYDQVKLYAERGYLPK
                     RAETLRKALCAFYGTPDVIDLAQFDIERI"
     gene            complement(13021..14784)
                     /locus_tag="PXC99_001457"
     CDS             complement(13021..14784)
                     /locus_tag="PXC99_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HDL5417909.1"
                     /translation="MIRYFFSLVLSLLMINSSHANLFSQPKFLKSEEAFVFSIQNENE
                     TLQLNWDIADNYYLYKKEIRVTPQNIEIGDITFPAAEQYNDEFFGQVEIYRNHLGLKV
                     PFKEIKDNASIVVEYQGCTKGFCYPPERVELKLDSILSATPEELAQLEAQAVEKSENF
                     AKTDNMAPPENVAKAEQDQLAENLANNRFSIFWFFVLGVGLAFTPCVLPMLPLLSAIV
                     IGNKQRPSTAKALLLSIAYVQGMAVTYTLLGLIVAAIGLPFQIALQSPPVLIGLSIVF
                     ILLACSMFGLYEIQLPNSWQQKLNAMSQKQQGGALGSVFLMGMIAGLIASPCTSAPLS
                     GALLYVAQSGDLVTGGLALYLLALGMGLPLILITLFGNKILPKSGEWLLKVKAAFGFV
                     MLALPVFLLSRVLPSHYEPFLWSALAVAFLIWLVDAIPSNSITKKIIKVLLLLALAIA
                     AKPWADLAWNGSTTQQQTTPHLALEKIQSLADLETKLTASKGKKVMLDLYADWCVACK
                     EFEKYTFSDQNVQNKLNEMVVLQIDMTKNSAENIELMKHFNVLGLPTILFFDENGNEM
                     SQSRVTGFLDAEQFLAWLNKL"
BASE COUNT         4476 a         2856 c         3208 g         4307 t
ORIGIN      
        1 aggtattttg gaagtctata aattcgacaa tttataaaaa aattgaaaat ttttatattg
       61 acattctaaa aatgaaagaa ttaagtatgc tttactcgaa ttagctcagc ttttgtcttt
      121 acccaattaa tttctgctat ggttgaagtt ggaaattgta cattgctttg gttattcgtt
      181 aaaatttgga cgagatcgaa cacaagtggg agatgtgaaa tcagaagaat attttttgcg
      241 ccttcctctc ttaaaaaatg tagatagctt tctactgtat gcgggtttcc gtcaggcgta
      301 acctcgtccc aactttcaat gaggttggta aaatgttggg gaaaattgac cgcttgcata
      361 ccaataagca cattttcaag cgtttgttgc gccctaaggt atgggctgac gagaatttta
      421 tctaattgaa tttgttggtt ggctaaatgt tctcctaacc attttccctg tgaaatggtg
      481 ttttttatac cattgtcggt taaacagcga gcagcatcac tcgaagcatt aaagcctgct
      541 tccccatggc gcataatcca aatattcata acattctcct ttagttgtat ttaaactctc
      601 ttgatttagg cgtataatga ccctcgttta acgcataatc aagatgctta gaaagatttt
      661 aacttaattt ttaaatttat tgatggagtc aaataatgtc tagaaaactc agaagaacga
      721 agatcgtttg tacaatggga cctgcaacag atcgtggcaa tacgttggaa aaaatcattg
      781 ctgccggtgc aaatatggtt cgtatgaatt tctctcacgg tattcctgaa gatcacatcg
      841 aacgtgcgaa taaagtgcgt gaaattgctg caagattagg tcgccacgtt gcgattttag
      901 gcgatttgca aggtcctaaa attcgtgttt cgacatttaa agacggtaaa attttcttaa
      961 atattggtga taaattcacc ttagacgcag atttaccgcg tggagaaggc catcaagaag
     1021 ctgtaggttt agattacaaa aacttaccaa atgatgtagt acctggtgat attctattgt
     1081 tagatgacgg taatgttcaa ctgaaagtgt tggaagtgga aggcgttaaa gttcatactg
     1141 aagtgacagt tggtggcccg ttatcaaaca ataaagggat taacaaatta ggtggtggtt
     1201 tatcagctcc tgcattaacc gacaaagata aagaagacat taaattagcg gcgaaaatcg
     1261 gtgtggatta cctagcggtt tcattccctc aatcaagtgc agatttacat tatgcacgtg
     1321 aattagcaaa agaagcaggc ttagaagcga aaattgtagc gaaggttgaa cgtgccgaaa
     1381 ctgttgcgac tgaagaagca atggacgaca tcattttagg tgcggacgtt gtgatggttg
     1441 ctcgtggtga cttaggggtt gaaattggtg atgcggcttt agtgggtgtg caaaaacgtt
     1501 taatccgccg tgctcgtaag ctaaatcgtg tggtaattac cgcaacccaa atgatggaat
     1561 cgatgattaa aaaaccaatg ccgacccgtg ctgaagtgat ggatgttgca aatgctgtgt
     1621 tagatggtac tgatgcggta atgctttccg gcgaaactgc aaacggtgac taccctgttg
     1681 aaacggtaaa atcaatggca gaagtgtgct taggtgctga aacaatgcca agcattaaca
     1741 tttctcgcca ccgtatggaa ggtacgttta aatctatcga agaagctgtg gcaatgtctg
     1801 caatgtacac cgcaaaccat ttagaaggtg tatcggcaat tatttcatta actcattcag
     1861 gcgaaacggc taaattaacc agccgtatca gctcaggttt accgatttat gcgatgtctc
     1921 gtaaccaaaa agcattaaac ctttgtgcgt tatatcgtgg tgtaacaccg gtatattaca
     1981 atgaagacag ccgcacaatg gaaggggcga aaaaagccat tgctcaatta aaagaacaag
     2041 gctatttatt aaccggcgaa ttagtgcttt taactcacgg agatgaatta aaagctggcg
     2101 gtacaaatac ttgtcgtatc ttaagagttg aataatctaa acgattaacg caaaagccac
     2161 ataaaacact ttatgtggct ttttttctgt cttaatatag cttaatgtaa tctgaactat
     2221 tgatattatt atgcacaata aacttctttc tatctgtatt ctccgccttt ctgccattgg
     2281 cgacgtttgc cataccttag cggttattca agctattcaa cgaaaatatc ctagtgctga
     2341 aattacttgg attatcggca aaacggaagc gtatttaatg aaagatattc cgaatgttca
     2401 cttaattcct tatgataaaa aaatagggtg gaaaggtatc tttacacttt ggcaaaaact
     2461 ttctcacaag cggtttgatt ttttattaaa tttacaaacg gcattccgag cttcaattct
     2521 atcgcttggg attaaagcaa agaaaaaaat cggctttaat caagacagag caagggaaat
     2581 gcaatggttg tttaccaacc agaaagtaga aatgacagac tctcctcacg tgcttgacgg
     2641 gcaaatgatg tttgccaaag ccattgggat aatggattta tcggcacaat ggaatttacc
     2701 tgtgagtgat gaagatttag cttatggcaa acaatttatt gattttacaa ggaaaaatat
     2761 actcattgct ccttgttcaa gcaagaaaga gaaagattgg ttgccggaac gctatgcaga
     2821 aattgctaac tggctaagta agcaaaatat caatgtatta attgcaggtt ctccatcgca
     2881 atatgaaatg gaaaccgcag ccaaaattca acaacttgcc ccgaattgta cgagtattgc
     2941 cggtaaaacc acgctaaaac agcttgcagg tgttattcgt caggttgatt tggtgatctc
     3001 ttcagattca ggtcctgccc atatcgccac tacgcaaaat acgccggtga ttgggttgta
     3061 tgcgattcat aatccaagac ggacaggccc ttacaatgac ttagacaaag tggtttcggt
     3121 atatgatgaa gcgattttgc aatcttatgg taaaccttgg cagcaattag cttgggcaac
     3181 taaagctaaa ggcaaaaatt ggatggaaaa aatcacggtg gagagtgtga aacaaaaagt
     3241 agttgaaact ttaaaaatta cgttgtaaag tttgtgtatt aaaagattta cacaaaagga
     3301 aattaaaatg aacacagtgt ttaatcaaga tagcgtgcat aacgtaaata tccaagatga
     3361 aaaggtatta ctgaccccac aagagttaaa acaagaattt ccgttgccgg aacatttacg
     3421 caatcaaatt gaacgttcac gcaaaacgat ttccgatatt attcacagac gagataaacg
     3481 ccaactgatt gtgattggac cttgttcgat tcacgaccca gttgctgccc ttgaatatgg
     3541 taaaaaatta aaagctcttt cggagcaagt gagtgataag ttgtatattg tgatgcgggt
     3601 ttattttgaa aagccccgca ctactgtagg ttggaaaggg ctgattaacg atccgaaaat
     3661 ggacggctct tttgatgtcg aaaccggctt acgtatcgca cgaaaactct gtttggattt
     3721 agccgaactt ggcttgccgt tagcgaccga agccttagat ccgatgacac cacaatattt
     3781 agcggatttg ttcagctggt cggcaattgg agcaagaaca actgagtctc aaactcaccg
     3841 tgaattagcc tcaggtttgt caatggcggt aggctttaaa aatggtacag atggtgattt
     3901 agccgttgca cttaatgcga tgcaatcttc cgctcaaagc catagcttta tcggcattaa
     3961 ccaacagggg caagttactt tactcaaaac aaaaggtaat gcagacggac atattatttt
     4021 acgtggcggt aaaaccccaa attatgaaaa gcaatatgtt gatgattgtg aatgggtgct
     4081 aaaacaagca aacttaccta cagcgattat gattgattgc agccacggca attccaataa
     4141 agattaccgc cgccaaccgc tggtggcaga aaatgtatta gagcagctac ttgctggcaa
     4201 tacttcgatt atcggtttaa tgattgaaag caatttacac gcaggtaatc aatcatcaga
     4261 attgccgttc gagcagatga aatacggtgt ttctattacg gatgcttgta ttgactggca
     4321 aactacagaa gagcttttaa ctcactttgc tgaaaagttg cgttaaagat aatttgcaaa
     4381 aaattgcata aaaacgaccg cttgtaaatt ggtaacaaat atgaacccat tagccccatt
     4441 acgagaacaa attgatcaag ttgatcaaca acttatcgcc ttactttctg aacgcttagc
     4501 tcttgtggca gaagttggga aagtcaaatc agaacacggc attcctgttt atgctccgga
     4561 gcgagaaacc gcaatgattt ccgcccgccg ctctgaagcg gaaaaacaag gtattccggc
     4621 ggatctcatt gaagatgtgc tacgccgtat aatgcgtgaa tcttatgcca atgaaaacaa
     4681 acacggcttc aaaagagtta attcggacat tcaaaaaatc gtgattgttg gtggtaaagg
     4741 gaaattaggt gggctgtttg gcaattattt aaccctatcc ggctataatg ttgaggcatt
     4801 aggacgtgat gattgggaca atgccgagca gattttagcc aatgcagatg tggttattgt
     4861 gtgtgtgccg attgccaaca ccctagcaac catcgagcgt ttacaatctt atttaaccga
     4921 aaatatgatt ttggcggatt taacctccgt caaacatcag ccgttgcaaa aaatgctgga
     4981 agtgcataat ggagcggtag tcggtttaca cccgatgttc ggaccggata ttgcaagtca
     5041 ggcaaagcaa gtggtcgctt gctgccacgg gcgtttccct gaacgttatc aatggttgct
     5101 tgagcaaatc aaaatttggg gggcaaaaat tgaagagatt gaggcagcag cacacgataa
     5161 tgcaatgacc tacattcaag ccctacgcca cttttccact tttgcattcg ggctacatct
     5221 ttctcgccag ccggtgcaac tctctcaatt attggcacta tcttcgccga tttaccgctt
     5281 agagttggca atgattgggc gtttatttgc ccaagacggc agcttatatg ccgatattat
     5341 tgccgataaa ccggaaaatt tagccaccat cgaaacctta aaagagagtt ttgaacaagg
     5401 gctagatttc tttaaacgca acgacaaagc cggttttatc aaggcttttg aggaagtgca
     5461 tcactggttt ggcgattatt ccgagcagtt cttgaaagag agtagagtat tgctccaaca
     5521 ggctcacgat tcaagaaagt aaaggtaggt tgaggttttg ctctgatagc actagcgtcc
     5581 acgctagtgc tatttaatat tctacaagcg gttaataaag agctgttttt tgcaaatttt
     5641 tatgcaaaat tatccgcttg ttttggcacg agcgtggacg ctcgcgccat cggaagaaac
     5701 atttttgtaa aattgccccc aaatctgacc gcttactgtg gctgaatttc tccatttttt
     5761 accgtaaaca aacaatcatc gcttctgtct tgccattgca tttgattgag ctgatcttga
     5821 gtaatggcgg taacgaatac ttgtgagcca ctttctctta aacgatgtgc taaaagctca
     5881 cgtttggttg ggtcgagttc ggaggcaaaa tcgtcaatta aaaataggca ttggcgttgt
     5941 ttttgggcga ccaaatgttc gccttgagcc agtcttaacg cacacatcaa tagctttaat
     6001 tgcccacggg aaagcacatc ttccaccggt aagccgttcg ctttaaaacg gaaatcggct
     6061 ttttgagctc caatcatcgt atagccaaga gctttatccc gctcaaaacc ttgtgccaga
     6121 atctcggcat aatccgcccc tttttcccag ccttgatgaa agctcaagcc gatttcgatt
     6181 tccggcagga aaaattggca ggttttctca atttcggggc gtaacgcttc ggcgtattcg
     6241 gctcgcattt cgctcacggc ataagtggtt ttcaccaatt cgatatccca cgctttgagt
     6301 tcttgataag agcggacttg ttgcaaagcc gaattacgtt gctttaataa acggcgaaga
     6361 ttgttccaat gagcgtagaa atcagggtgc tggtgaaata agccccagtc caaaaaagca
     6421 cggcgaaagc tcggaccacc gttaagtaag gttaagcctt cgggggtgat cacttgcatc
     6481 ggcaataaat gggctaaatc ggcaattttg ttgccgtctt caccgttgat tttaagtgtc
     6541 gtctcgccac tgcgaaattt ctgaatgccg accgaccaac tgtgctttgc ctcgtcaatt
     6601 ttaccgtgta gtacgaaatc gtctttatcg taatggataa tgcggttgct gatatggctt
     6661 ttgaatgaac gcccgtgtcc aagatagaaa attgattcca acaaactggt tttgccactt
     6721 ccgttcgccc cgactaaaaa attaaaatgc gggctaaatg ctaaatcggt atgttggata
     6781 tttctaaaat ggttgattaa taaacgggtt aaagccatag ttaaagtgcg aggaataaaa
     6841 agagtagcca ttttagcaaa tttgcaaaat tttgggaaaa attaaccgct tgcggattag
     6901 aaagtggttc agtagaataa gccgtttatt ttttattgaa aattaagagg aaaaattatg
     6961 tttggaaaag gtggcttagg cggcttaatg aaacaggctc agcaaatgca agagcgtatg
     7021 caaaaaatgc aagaagagat cgcccaatta gaagtaacag gcgagtctgg tgcgggtttg
     7081 gtaaaagtca ctattaacgg ggctcacaat tgccgccgaa ttgaaattga tccatcatta
     7141 atggaagatg ataaagagat ggtggaagat ttagttgccg ctgcctttaa cgatgcggtt
     7201 cgccgtgcag aagaaatgca aaaagagaaa atggcaagtg tgactgccgg tatgcaactg
     7261 ccgccgggta tgaaattccc attctaattt aagtatgcaa accagtcctt tacttgaaaa
     7321 tttgatggaa gccttgcgtg cattgcccgg tgtcggaccg aaatcggcac agcgaatggc
     7381 ttaccatctg ttgcaacgta atcgttccgg cggtgtggcg ttgtcaaaag ccttaaatga
     7441 ggcaatgagc catatcggac attgcaaatc gtgccgtact tttaccgaag aggaagagtg
     7501 tacgatttgt aaaaatcctc gccgtcagat gagcgggcaa ctttgtgtgg tagaaatgcc
     7561 ggaagacatt caagcgattg agcaaaccgg gcaattttca gggcgttatt ttgtgctgat
     7621 ggggcatttg tcgccgattg atggtatagg ccctcgtgaa atcggcttag atttattgca
     7681 acaacgcttg gaacaggaat ctttccacga agtgattttg gcgactaatc cgaccattga
     7741 aggtgatgct accgcaaact acattgctga aatgtgcaga atgtataacg tgaaagctac
     7801 tcgtattgct cacggtgtgc cggtcggtgg ttcattagaa atggttgatg gcacaacgct
     7861 ttctcactct tttgcaggac ggcgtgatat tgatatttaa agctatttct gtgctaactt
     7921 aattctgata taattactca actattttaa attattattt tgaggctaaa aatggaaact
     7981 attgacaaaa tcaaacaaca aatcagcgaa aatccgattc tactttatat gaaaggttca
     8041 ccgaaattcc catcttgtgg tttctccgct cgtgcggtgg aagcggtaat taactgccaa
     8101 gtgcctttcg gttatgtgga tattttaacc aatccggata ttcgtgcgga attgccaaaa
     8161 tttgcaaact ggccgacttt cccacaatta tgggtagaag gtgaattagt tggcggttgt
     8221 gacatcgtat tagaaatgct ccaaaaaggc gaacttcaaa ccttattaaa agaaaccgca
     8281 gcaaaacacg cagcataatt tcaaaccagt atgttaaggc tcttatgttt aagagcctta
     8341 attttttctt gcgatttagg cttaaacttc ttacctcaag agctattttg ttttagaatg
     8401 tcaaaattat ttcgtaacat aaaaataaaa ggacacaaca tggcattaaa agagttagat
     8461 tgggcaaatt taggcttttc ttatatcaaa accgattacc gtttcattgc acattggaaa
     8521 gacggaaaat ggaatgaagg cgaattaact caagacaata cactgcatat tcacgaaggc
     8581 tcaactgccc tgcactatgg gcaacaatgt tttgaggggt taaaagccta tcgctgtaaa
     8641 gatggctcaa ttaacttatt ccgcccggat caaaatgccg agcgtatgca acgcaccgca
     8701 gatcgtttat taatgccacg tgtgccaacc gagctgttta ttcgtgcctg taaaaaagtg
     8761 gtaaaagcca atcaagattg gttagggcct tacggttcgg gggcaaccct ttatttacgt
     8821 ccgtttttaa tcggcgtggg cgaaaatatt ggggtgaaag ctgcacctga atttattttt
     8881 tccgtattct gctgtccggt gggggcatat ttcaaaggtg gcttagcacc ctcaaacttc
     8941 attacaaccg actatgaccg tgcagcccca atgggaacag gtggtgtgaa agtaggcggt
     9001 aactacgctg cgagtttatt accgcacgaa ttggcggttg agcaaagttc aactacccgt
     9061 aaatttgccg atgcgattta tttagatccg aaaacccata ccaaaattga agaagtgggg
     9121 gcggcgaact tctttgggat taccaaagac aacaaattca tcaccccgat ttcagagtcg
     9181 attttgccaa gtattaccaa atactcattg ctacaccttg ctcaagagcg tttaggtatg
     9241 gaagcgattg agggagatgt gtatatcgac cagttagacc aatttgccga agccggtgct
     9301 tgtggtacgg ctgcggtgat tacgccggtt ggtggtattc aacataaaga caaattccac
     9361 gtcttctatt cagaaaccga agtggggcct gtcacccgcc gtttatacgc agaattaacc
     9421 ggtattcaat ttggcgatgt tgaagcaccg caaggctgga ttgtaaaagt agagtaattt
     9481 tacacaagta acaagcggtc gaattggcaa aactttttgc aaattcaacc gcttgtcttt
     9541 atttagagaa tatgaaaaag ttaatttttt taggtttatc agcacttgca ttagctggtt
     9601 gttcctcaac aatttctaat cctaatcaac tgattgggca atggcaatgc actattgagt
     9661 acgatgattt taatattcgt acggtggata atttacgatt ttccacaaat gggactatga
     9721 ccaatcaagg tggtatatat taccctattc aaaagtcgat ttttgagtat tcattacaac
     9781 agaatgggcg ctggagtgtg aaaaacgggg ctattgttta tcgtatcgtc tcagaatctg
     9841 tacagcgtag ccatcgttca caaatatggt ctgaattaca acgtgatgcg gagctacaac
     9901 aatttgaaga gaatttattt agctcacttt ctgatagtga taataataaa acagtggaac
     9961 taatcatcac tgattttgat gaaaaagaaa tggatatcaa gcaagaaata aaagggcata
    10021 aagcttataa agggcaatgt ataaaacagt agaggtaaaa atgattcaac gttttgaagt
    10081 aggtagccgt ttttcggaaa tggcaataca taacggtgtg gcttacttgg cagggcaagt
    10141 gccgttagat gacaccgccg atgcttacac ccaaacccag caagtgcttg cagaaattga
    10201 taaatggctg gcaaaagcca acagcgataa aagtaaaatt ctaatggcta cggtttattt
    10261 aaaagagatg gcagattatg cggaaatgaa ccgtgcgtgg gacgaatggg ttgccccaaa
    10321 taacgctcca ccaagagcgg cggtggaggc taaattagcc aatccaaatt ggaaagtcga
    10381 aattgtggtt accgctgcgg tataaatgaa aagcagaaag acgatctctg tttttcatta
    10441 tgattcgtac attttttcga tttgttgctt atagcgttct agaatgacct ttcgtcttaa
    10501 ttttaatgta ggcgtaattt cttccatttt ggtgctaaat gcttgcgaaa gtagtgtaaa
    10561 ctttttgatc tgttcaaaac ttgcaaggtc tttttgtaat tcgttaatgc gttgttcaaa
    10621 cattctgaca acctcataat gtttaatgag ttctaatctg tcttgatagc gaatattgag
    10681 cttttttgca tactcttcga ggctatcaaa gcaaggaact atcaacgcag aaacatattt
    10741 tttggcatca gcaatcaccg caatttgctc aataaactta tctttaccta tttttccttc
    10801 aatgtattgt ggggcaatat atttaccgtt tgaagttttc attaattctt taatacgatc
    10861 ggtaatataa agattgcctt ccgaatccag ttcaccggca tctcccgttt ttagaaaacc
    10921 ttcagcagta aaggcttgag cagtggcttc cggttttttg tagtaacctt tcataaccaa
    10981 gcctccacgc actaaaattt cattttcttc actaattttg acctcaacat caggcattaa
    11041 ggtaccggtt gagttgatat taaagccttt ttcctgccag catgaaatag tggcagtagt
    11101 ttcggtcatt ccgtatccaa gttttacatt gatgcctata ctttggaaaa atagcccgat
    11161 agacggatct aatttagctc ctccacacgg catcatacga atacgaccgc ctagtaaggc
    11221 tcgtaatttt cctagcacca atttatctgc cataatgtac tgcaagcggt ggaaaaaggc
    11281 tgatttttta ccaaacagat tgtcttcggc ggtacggatt gcccatttaa ataacgctcg
    11341 gcgatgtatc ggtgcttgtt ggactttatc ccacaccgca gtatagattt tttcatagaa
    11401 ccttggtacg gcacacatta atgtaggtcg taccgttgag agtgcttgac gtacctgttg
    11461 aggatcttcc agatagcaat ttactgcccc tctgtatagc acataagtga cccaagcacg
    11521 ttcaaagata tgcgataaag gtaaaaatga aagggatata tcattttcgt caatatgagg
    11581 gagtgcttta ttatgtgcct gaagttgatg agctaaatta gcataatcta acataacacc
    11641 tttaggctca ccggttgttc ccgaggtata aattaaagtg aataaatcct ctaagcattt
    11701 atcatttaaa cgtttggtta attcagcttc atcttgatta accttaatga aatcttgcca
    11761 atgttgagcg atagggaaat cacgcagatc tattgagtct ttcatcgcga caatttttat
    11821 taatagcgaa cagttgttcg ctatttctat ggcttgatca tattgttcct gatcgccaac
    11881 aaagaggatt tttatatccc cgtcattcag gatatattca agttgtttgg tggtactggt
    11941 tgcataaatc ggcactgcta ccgcacgaat ttgcattgca gcaatatcgg taattgtcca
    12001 acgaggcata ttttgtgcaa aaatagcgat tttctcttga acggcaagac cgtttgccag
    12061 caaggcataa gaaagattat tgacctgttt ttgtaattct aaccaactta tttctgacca
    12121 tttttcatct tgcataaaac gtaaagctgg gtggtggcta agagcctgaa cttgctggtg
    12181 gaaacggtgg ataaagtgaa aatctaaagt gctcataatc ttatttttac tttctatttc
    12241 agtgaacagt tgtacgctaa tataatagaa aatatgaaaa aaagaaacag ttgtactctg
    12301 aaacaaaggg ttttggatag gaagtaatca aggcaataga aatagataag tagggtatcg
    12361 tttagtacaa atgcaatatt tttcaaaaat gagaccgctt gtatatgcaa caagcggtct
    12421 gttttgttaa aaattttgca actaaattcg ttcaatatca aattgagcta aatcaatcac
    12481 atcaggtgta ccgtaaaaag cacagagggc tttacgcaag gtttcagctc gtttgggaag
    12541 gtagccacgt tctgcataga gcttgacttg gtcgtacact gcttgtttaa aggctgaatt
    12601 atcgccggga ttgcccgaga gattgtcggc actagcaaaa taacgaaaac cggcagcagt
    12661 tgctaacacc cattcaatcg cttgcggttt gatttccgca ctttcaaatt cacgttggcg
    12721 ttcggcagag cgtccgtccg gctcgtacca atagccaaaa tcttcaagtt tacgccgagc
    12781 ttctccagca acgagccaat gggcaatttc gtgcaaggca ctgctgtaat agccgtgagc
    12841 aaataaaatc acattgtaag ggcgttcgct cggcacacca tcttcgtcca taaattcggg
    12901 caagtaaatc ggataattac ccccccgctc taggcgagtg ttatattcat cagaaaagca
    12961 ttgattaaaa atgcgaataa tgtcttcaat tttatgattt tcttgattca tttcttttct
    13021 ttataactta ttcagccaag ctaaaaattg ctcggcatcc aaaaagccag taacacgaga
    13081 ttggctcatt tcattgccgt tttcatcaaa aaacagaatc gttggcaaac ctaatacatt
    13141 aaagtgtttc atcagctcga tattttcagc cgagtttttc gtcatatcga tttgcaacac
    13201 taccatttca ttcagtttgt tctgaacatt ttggtcacta aaggtgtatt tttcaaactc
    13261 tttgcaggcg acacaccagt cggcatagag atcgagcatc acttttttac ctttggaagc
    13321 ggtcaatttt gtctctaaat cggcaagtga ttgaattttt tctaacgcta agtgcggtgt
    13381 agtttgctgt tgagtggttg agccgttcca agctaaatct gcccaaggtt tagcggcaat
    13441 ggctaaagcg agcaataata agactttgat gatctttttc gtgattgaat tagatggaat
    13501 cgcatccacc aaccagatca aaaatgcaac cgcaagggcc gaccataaaa acggttcata
    13561 gtggcttggc agcacacggc ttaataagaa caccggtaag gcaagcataa caaaaccgaa
    13621 tgcagctttc acttttaaca gccattcgcc ggattttggc agaattttgt tgccgaataa
    13681 ggtaatcaaa atcagcggta agcccattcc cagtgcgagt agatagaggg ctaagccacc
    13741 ggtgactaaa tcgccacttt gtgccacata aagcaacgca ccggaaagtg gggcagaagt
    13801 acaaggggaa gcaattaagc ctgcgatcat ccccattaaa aacacgctac ccaacgcacc
    13861 accttgctgt ttttggctca ttgcattgag tttttgttgc cagctatttg gtagctggat
    13921 ttcgtataag ccaaacattg agcaggcaag cagaataaag acgatagata aaccaatcaa
    13981 caccggtggg ctttgtaagg cgatttggaa aggcaagccg atagccgcta caattaagcc
    14041 aagtaaggtg taagtaactg ccattccttg cacataggca atacttaaca gcaatgcttt
    14101 agcggtagaa gggcgttgct tatttccaat tacaatcgca gagagaagtg gtagcatcgg
    14161 cagtacgcaa ggagtgaatg ctaatccaac gcctaataca aaaaaccaaa aaatggaaaa
    14221 acgattgtta gctaaatttt cagccagttg atcttgctct gcttttgcca cattttcagg
    14281 gggcgccata ttgtcggttt ttgcaaaatt ttcgctcttt tcgaccgctt gtgcttccag
    14341 ttgcgccagt tcttcaggtg tagcagagag aatactgtct aatttaagct caacccgttc
    14401 cggtggatag caaaagcctt tggtacaccc ttgatattcc actacgattg aggcgttgtc
    14461 tttaatttct ttaaacggta cctttagccc taagtggttg cgatagattt ccacctgccc
    14521 gaaaaattca tcgttatatt gctcggcagc gggaaaagtg atgtcgccta tctcaatatt
    14581 ctgtggcgtg acacggattt cttttttata aagataataa ttgtctgcaa tatcccaatt
    14641 taactgtaat gtttcatttt cattttggat tgaaaaaaca aaggcttctt ccgattttag
    14701 gaatttgggt tgagagaaaa gatttgcgtg agatgagttt atcatcaata aactcaagac
    14761 gagtgaaaaa aagtatctaa tcatattgaa atcctatttt taattgtctc ggcgaaaatt
    14821 atagcgtaat cagtattcat attccaa
//
LOCUS       DANLVT010000057        14690 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.057, whole genome shotgun sequence.
ACCESSION   DANLVT010000057 DANLVT010000000
VERSION     DANLVT010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14690)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14690)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14690
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.057"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            50..322
                     /locus_tag="PXC99_001458"
     CDS             50..322
                     /locus_tag="PXC99_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005709555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HDL5417910.1"
                     /translation="MKKGIHPENYREVLFYDASVQQGWVIRSCAATNKTMVWEDGKEY
                     PLYTLDTSSASHPVYTGKRREVNTEGRASQFKDRFKGFASTLSNQK"
     gene            331..456
                     /gene="ykgO"
                     /locus_tag="PXC99_001459"
     CDS             331..456
                     /gene="ykgO"
                     /locus_tag="PXC99_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L36"
                     /protein_id="HDL5417911.1"
                     /translation="MKILNSLKTAKSRHPDCQIVRRKGKLYVICKTNPRFKARQR"
     gene            636..1409
                     /locus_tag="PXC99_001460"
     CDS             636..1409
                     /locus_tag="PXC99_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5417912.1"
                     /translation="MLKKLSIAALALTLSVSAFAKESLLERINNKGTITVGTEGTYAP
                     YTYHDASGKLTGYDVEVTRAVAEKLDVKVEFKETQWDAMLAGLKGERFDLVANQVALT
                     SPERRATFDKSESYSWDGAALLVREDETKIKTPADVKGVKTAQTLSSNYGEIARENGA
                     DIVPIDGMAQGLLLIQQKRADATFNSHLSLLDYLKKNPNSGLKIVWEKEEKVGAGLIA
                     NKGNDEALAKISKAIVELREDGTLKKLGEQFFGKDISVQ"
     gene            1492..2208
                     /locus_tag="PXC99_001461"
     CDS             1492..2208
                     /locus_tag="PXC99_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDL5417913.1"
                     /translation="MLNDLLLSIPFMTQARVDLVLSGFWPMVQAAFLVSIPLAIASFI
                     IGMLIAVAVALVRISPATGFFHRLLLWLVKGYISIIRGTPMLVQICIVFYGLPAIGIF
                     IDPIPAAIIGFSLNIGAYGSETIRAAISSVPKGQWEAGYTIGMTYMQTFRRIIAPQAF
                     RVAVPPLSNTFIGLFKDTSLASVVTVTEMFRVAQQVANMSYDFLPVYIEAGLIYWCFC
                     WVLFLIQARLEVRFNRFVAK"
     gene            2218..2970
                     /locus_tag="PXC99_001462"
     CDS             2218..2970
                     /locus_tag="PXC99_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDL5417914.1"
                     /translation="MLKIRNIHKTFGNNAILRGIDLDIQKGQVVVILGPSGSGKTTFL
                     RCLNALEMPEQGTLEFSGNAPLKIDFAVKQSKKEILALRRKSGMVFQNYNLFPHKTAL
                     ENVMEGPVFVQQQAVEIAQKNAKALLEKVGLADKAELYPFQLSGGQQQRVGIARALAI
                     QPELMLFDEPTSALDPELVQDVLNTMKELANEGWTMVVVTHEIKFALDVADVVVVMDG
                     GEIVEQGSPQQLFNHPQHERTKRFLNQIRADK"
     gene            complement(3186..3719)
                     /locus_tag="PXC99_001463"
     CDS             complement(3186..3719)
                     /locus_tag="PXC99_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HDL5417915.1"
                     /translation="MEFLAPVISLIVGFLSFVLVLRTWLQFCRVDPRLPISQTLLKIT
                     EPMVSPVGKLIPTVKNICFPALLIAAALVTLQFILFGVDLPRAVLIGLLSVVKTFGQI
                     LFFTTLIRALMSWVTQGNHPLDYTVAQITEPVLGFIRKLLPRTGMLDFSVMVLGFGLL
                     LLNSLFYQIFGGLWAAA"
     gene            complement(3825..4166)
                     /locus_tag="PXC99_001464"
     CDS             complement(3825..4166)
                     /locus_tag="PXC99_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggL family protein"
                     /protein_id="HDL5417916.1"
                     /translation="MAIQRNARQRKKMHLGEYQELGFLIKFTFAEGTGIDQIDETVDR
                     FIDEVIRPNGLALEANGYLNWEGLVCLEKLGKCDESHRQLVKTWLETNGLKEVQVSEL
                     FDIWWDYPAQA"
     gene            complement(4190..4939)
                     /gene="trmB"
                     /locus_tag="PXC99_001465"
     CDS             complement(4190..4939)
                     /gene="trmB"
                     /locus_tag="PXC99_001465"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HDL5417917.1"
                     /translation="MSEKQTFADKKRKTVEQAEFTEDGRYLRKVRSFVLRTGRLSDYQ
                     RDMMNNNWANLGLDYQPMPFNFEQIFGNNNPVVLEIGFGMGKSLVEMAEQNPNRNYIG
                     IEVHTPGVGACIAYALEKGVKNLRVICHDATEILRDSIADGTLGGLQLYFPDPWQKAK
                     HHKRRIVQPEFISRVIRKLSPNGFIHFATDWENYAEHMLEVLRQFESELQNTSATNDF
                     IPRPNFRPLTKFEERGHRLGHGVWDLYFTKK"
     gene            complement(4949..5899)
                     /locus_tag="PXC99_001466"
     CDS             complement(4949..5899)
                     /locus_tag="PXC99_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000288132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HDL5417918.1"
                     /translation="MNSRILATGSYLPTKVRTNADLEKMVDTSDEWIVTRSGIRERRI
                     AEPDETVATMGAKAAQQALEMAGIEANDIDLIVVGTTTNSHAYPSAACQIQGLLQIED
                     AIAFDVAAACTGFVYALTVADQFVRNGQVKKALVIGSDINSRMLDETDRSTVVLFGDG
                     AGAVILEASEELGIISTHLHASPDLENNLTLRSQKRGEERSGFIEMQGNATFKIAVNQ
                     LSSVVEETLEANNLQKSDLDWLIPHQANLRIITATAKKLEMEMDQVVVTLDKYANTSG
                     ATVPVALDEAVRDGRIQRGQLLLLEAFGGGWTWGSVLVKF"
     gene            complement(6045..7064)
                     /gene="hemB"
                     /locus_tag="PXC99_001467"
     CDS             complement(6045..7064)
                     /gene="hemB"
                     /locus_tag="PXC99_001467"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HDL5417919.1"
                     /translation="MQVIQSQYPLRRMRRLRKHDFSRRLVAENQLTVNDLIYPVFVIE
                     GENQRVQVPSMPGVERLTIDQLLVEAAELVKYGVPAVALFPVVGDVKKSLMAEEAYNP
                     QGLAQRAVRALKAQFPELGVITDVALDPFTTHGQDGIIDETGYVLNDVTTEVLVKQAL
                     SHAEAGADIVAPSDMMDGRIGKIREALEQNGFINTQIMAYSAKYASNYYGPFRDAVGS
                     AGNLKGGNKYTYQVDPANGNEGLHEVAMDIQEGADMVMVKPGMPYLDMVWRVKENFGV
                     PTFAYQVSGEYAMHMAAIQNGWLKERECIMEGLLCFKRAGADGILTYFAKRVAKWLYE
                     EAQAK"
     gene            complement(7145..7900)
                     /gene="tatC"
                     /locus_tag="PXC99_001468"
     CDS             complement(7145..7900)
                     /gene="tatC"
                     /locus_tag="PXC99_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HDL5417920.1"
                     /translation="MSQVDESQPLITHLIELRNRLLRSFICVLLVFCGLVYWANDIYT
                     LLATPLTDNLPDGATMIATNVATPFFTPIKLTIVVSVFLSVPFILYQIWAFVAPALYK
                     QEKRLVYPLLVSSTLLFYCGVAFAYYVVFPLVFGFLTSTAPEGVTMATDISSYLDFVL
                     TIFMAFGICFEVPVAIILLCWAGVTTPEDLKAKRPYIIVAAFVIGMLLTPPDIFSQTL
                     LAIPMCLLFEVGVLFARFYRPKDDDEPSEQVAQ"
     gene            complement(7887..8531)
                     /gene="tatB"
                     /locus_tag="PXC99_001469"
     CDS             complement(7887..8531)
                     /gene="tatB"
                     /locus_tag="PXC99_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HDL5417921.1"
                     /translation="MFDIGFSELVLIMIVGLVVLGPKRMPIAIRTVMGWVSTIRGLAA
                     NVQNELAQELKLQELKESIKKAEELNLSSLSPELNKTVEDLKMSATQLQDSLNSAKNE
                     LEKTAAESSTIPKLTDEQVAEIQQKIEQESQVLEAQELQKNAQNKPLEVDSLSEQLNV
                     TRTEKPLSADELAEQAEMDESLLTLESYYPPDDDLATPQSSESAQKSEANNVAS"
     gene            complement(8535..8756)
                     /gene="tatA"
                     /locus_tag="PXC99_001470"
     CDS             complement(8535..8756)
                     /gene="tatA"
                     /locus_tag="PXC99_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HDL5417922.1"
                     /translation="MGGISIWQLLIVVAIIVLLFGTKKLRTLGSDLGESVKGFKKAMA
                     DEKKDAEFEKVEAKDAISAEQKAKEKEQA"
     gene            complement(8867..10504)
                     /gene="ubiB"
                     /locus_tag="PXC99_001471"
     CDS             complement(8867..10504)
                     /gene="ubiB"
                     /locus_tag="PXC99_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HDL5417923.1"
                     /translation="MNIKNLNRFYHIIRTFLRYGIDEAIPNLPITRKIKLGRKALFWV
                     KNQHSDKPYGVRLRLALQELGPVWIKLGQMLATRRDLFAPELADQLALLQDNVEPFDG
                     KIARQIIEQALGGKLETWFENFDETALASASIAQVHTAKFNQNQPLAGKDVVLKVIRP
                     GIEPVIKADLELMYEIAHFIPKLSNDGKRLRAVEVVREYEKTILDELDLRKEMHNAIR
                     LRANFENSEMLYVPEMYQDFCHKNLIAMERIYGIPVSNIAELEANSTDMKLLAERGVQ
                     VFFTQVFRDSFFHADMHAGNIFVNREHPENPQYIGIDCGIVGTLNHNDKRYLAESFVA
                     FFNRDYRRVALMHVESGWTPPDTDIDKFEQAFREVCEPIFAKPLSEISFGHVLLNLFN
                     VAREFNMEVQPQLVLLQKTLLYIEGLGRQVYPQLDLWQTAKPFLQNWLNEQVGVKAMV
                     RDIKQRLPQYREHFAEFPEALFKALQEQKQINFRLAEINESLKAQNSNANSRFLVLSI
                     SAIVICGAFWKFESLPIWLSVPLLTLFPLVLILSQRK"
     gene            complement(10578..11555)
                     /locus_tag="PXC99_001472"
     CDS             complement(10578..11555)
                     /locus_tag="PXC99_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005825116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL5417924.1"
                     /translation="MKQIIAQARENAVRAVDFQRVLMYWHIGKRIFEQEQQGQERADY
                     GTYLIKMLAKELEPEFGSGFCSRQLERYRQFYRAFPIATALRSQLNWTQYRRLIQISD
                     SDKREFYLAESCKNNWSSRQLERQINSSLYERLLLSNDKESVLAVARNEQQPVDPKQL
                     IKDPMVLEFLGLKRESAYYEKDLEQAIITHLQDFLLELGNGFSFIARQKRLHLDGDDF
                     FVDLVCYNRLLQCFVIFEIKTHKLTHQDLGQLQMYVNYFDRVEKLPHENATIGVLLCA
                     DKNDAVVKFSLPENQNKIFASQYQLYLPSEQTLIAEVQKEIENFEQKYP"
     gene            complement(11716..12363)
                     /locus_tag="PXC99_001473"
     CDS             complement(11716..12363)
                     /locus_tag="PXC99_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 sterol-binding domain-containing protein"
                     /protein_id="HDL5417925.1"
                     /translation="MLNNVKQQLMLPQFTFGLIETAFNALLKRSPHIEPNLRKLSGKV
                     LKIALTSPKIDFFVLFSESRTDWLGNYEGEADCTVQLAFDTLPKLADKQKLTELINNK
                     SLVLTGDIQVLQHFTALLEQLEKDPAELLSPFVGDVVAQTSTDLAKKLLGKVKAQFEQ
                     NNQHLVENLIQERPVLVHRLQAVHFYDQVEELAQQALKLEQKFTHYVRSSSHQQS"
     gene            complement(12554..13306)
                     /gene="ubiE"
                     /locus_tag="PXC99_001474"
     CDS             complement(12554..13306)
                     /gene="ubiE"
                     /locus_tag="PXC99_001474"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HDL5417926.1"
                     /translation="MQQSAETTHFGFKTVAKEEKQQLVANVFHSVAGKYDLMNDLLSF
                     GIHRVWKRFTIDCSGVRKGQKVLDLAGGTGDFTAKFSRIVGESGEVILADINSSMLEV
                     GREKLRNLGVVGNVSYVQANAECLPFADNTFDCIVISFGLRNVTDKDKALRSMFRVLK
                     PGGRLLVLEFSKPIIDPISQLYNFYSFNILPKVGEVVVNDAESYRYLAESIRMHPKQD
                     ELKAMMEQTGFESVNYYNLSAGIVALHRGYKF"
     gene            13651..14604
                     /gene="corA"
                     /locus_tag="PXC99_001475"
     CDS             13651..14604
                     /gene="corA"
                     /locus_tag="PXC99_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HDL5417927.1"
                     /translation="MIRAFGLDNACLISVDETNPTLLNDAIWIDLIDPSEAERTVLEN
                     RLDQTLAEERELEDLEASARFFEDEDGLHLHSFFYCLDDDDYADIATVAFTIRDGRLF
                     TLRDRDLPAFRLYRMRSRREKLIDSNAYELLLDLFETKIEQLADVIEEVYADLEKLSR
                     VILNGQQENENFNDALSRLTEFEDASSKVRLCLMDTQRALSFLLRKTRLPNNQLEQAR
                     DIMRDIESLQPHNESLFQKVNFLMQAAMGYINIEQNRIMKFFSVVSVMFLPATLVAST
                     YGMNFEFMPELHFQYGYPMAIGLMIVAASAPYLYFKRKGWL"
BASE COUNT         4197 a         3275 c         2864 g         4354 t
ORIGIN      
        1 cccatatttt aattatggtt aatgacctta tctaaattct ggagaaaata tgaaaaaagg
       61 gattcatcct gaaaattatc gtgaagtgtt gttctatgat gcctcagtgc aacaaggctg
      121 ggttatccgt tcttgtgcgg caaccaacaa aacaatggta tgggaagatg gcaaagaata
      181 cccactttac accttagata cctcatcggc gtctcaccct gtttacacag gtaaacgccg
      241 tgaagtgaat acagaaggtc gtgcaagtca atttaaagat agatttaaag gctttgcttc
      301 aacgctttca aatcaaaaat agaggataaa atgaaaatct taaactcact taaaaccgca
      361 aaatcacgcc acccggattg ccaaattgtc agacgcaaag gcaaacttta tgtgatttgc
      421 aaaaccaacc cgagatttaa agctcgtcag cgttaaaaac cagcacctta ataagctaat
      481 ttattaaggt gttttttatt tcatcttctc aatattacct attttaacca catcaacgat
      541 tttattattt cttattccat ttagttattt gcaagcggtc aattttcccc ttaaatttgc
      601 aaaaaattta ttttaccaat taaaaggaaa tgattatgtt gaaaaaatta tcaattgctg
      661 cattagctct taccctttct gtttctgcat ttgctaaaga gagcctactt gagcgtataa
      721 acaacaaagg gactattact gtgggtacgg aaggaactta tgccccttac acctatcacg
      781 atgcgagcgg taaattaacc ggttacgatg tagaagtaac ccgtgcggtg gctgaaaaat
      841 tagacgtaaa agtggaattt aaagagacac aatgggacgc tatgttagcc ggtttaaaag
      901 gtgagcgttt tgacttagtg gcaaaccaag tggctttaac cagcccggaa cgtcgagcga
      961 catttgataa atccgaatct tacagctggg acggtgccgc cttattagtg cgtgaagatg
     1021 aaactaaaat caaaacccct gctgatgtaa aaggcgtgaa aactgcccaa accttgagct
     1081 caaactatgg cgagattgcc cgtgaaaacg gtgcagacat cgtgccaatt gacggtatgg
     1141 ctcaaggctt actgttaatt caacaaaaac gcgccgatgc aactttcaat agccacttat
     1201 cgctattaga ttacttgaaa aagaacccga attccggctt aaaaattgtg tgggaaaaag
     1261 aagaaaaagt gggtgcaggc ttaattgcga ataaaggcaa tgacgaagca ttagcgaaaa
     1321 tcagcaaagc aatcgtagaa ttacgtgaag acggcacgtt aaaaaaattg ggcgagcagt
     1381 tcttcggtaa agatattagt gtacaataat ccatattgga ttaggcttgg ggcgaattcg
     1441 ccccttttat ttttaaatct ccctcaaaac gggagatttt aggtttttca gatgttaaac
     1501 gatctacttc tctcaatccc ctttatgacc caagctcggg tcgatttagt gctaagcggt
     1561 ttttggccga tggtacaagc ggcattttta gtctctattc cgctggcaat cgcctcattt
     1621 attatcggta tgttaattgc cgttgcagtt gcattagtgc gaattagccc tgcaacaggc
     1681 ttttttcacc gcttgctact gtggctggta aaaggttata tctcgattat tcgcggcacg
     1741 ccgatgttgg ttcagatctg tattgtgttt tatggtttgc ctgcaatcgg catttttatc
     1801 gatccgattc cggcggcaat tatcgggttt tcactcaata tcggggctta tggctcggaa
     1861 acgatccgtg ctgcgatctc ctccgtgcca aaaggacaat gggaagccgg ttatactatc
     1921 ggtatgactt atatgcaaac ttttcgccgt atcattgccc cgcaagcgtt tcgagttgct
     1981 gttccgccac ttagcaacac ctttatcggt ctgtttaaag atacctctct tgcctccgtt
     2041 gttaccgtaa ccgaaatgtt ccgggttgct caacaggtag caaatatgtc ttatgacttc
     2101 ctacctgttt atattgaagc cggtttgatt tattggtgct tctgctgggt gctattttta
     2161 attcaggcga gattggaagt ccgctttaac cgatttgtgg cgaaataagg aggaattgtg
     2221 cttaaaattc gcaatattca taaaaccttt ggcaacaacg ctattctacg cggcattgat
     2281 ttagatattc aaaaagggca agtggtagta attttaggcc cttccggttc aggcaaaacc
     2341 acctttcttc gttgcttaaa tgcactggaa atgcccgagc aaggcacatt ggaatttagt
     2401 ggtaatgctc cgctgaaaat tgattttgcc gtaaaacaga gcaaaaaaga gattttagcg
     2461 ctacgccgca aatccggtat ggtgttccaa aactacaacc tgttcccgca taaaaccgca
     2521 ttggaaaatg tgatggaagg accggtattt gtgcaacaac aagcggtcga aattgctcaa
     2581 aaaaatgcaa aagccctgtt agaaaaagtc ggactggcgg ataaagcaga actctacccg
     2641 tttcaactgt caggcgggca acagcaacgg gttggcattg cacgagcatt agcaattcag
     2701 ccggagctga tgttatttga tgaaccaact tcggcacttg atcctgagtt agtgcaagac
     2761 gtgctaaata cgatgaaaga actggcaaat gaaggctgga caatggtcgt ggttactcac
     2821 gaaatcaaat ttgcccttga tgttgccgat gtagtggtgg taatggacgg cggtgaaatc
     2881 gttgaacaag gctcgccaca gcaactgttt aaccacccac aacacgaacg aactaaacgt
     2941 tttttaaatc aaatcagagc ggataaataa gaaacgatag cgctagcgtc cacgctagtg
     3001 ctatctaata aatggtacaa gcggttaatt atgtataaat tgttatactg ttttggcacg
     3061 agcgtggacg ctcgcgccat cgtacagtaa aatcagctaa caaggttccc cataaaggat
     3121 aaataagaca aggctcctta atcttttaga ttaaggagct tatttttaga ttttagaaat
     3181 ccgatttaag ccgcagccca tagtccacca aaaatttggt agaacaagct atttagtagc
     3241 aataagccga aacctagcac cattaccgag aaatctaaca ttcccgttct tggcaggagc
     3301 ttgcggataa aacctaacac cggttcggta atttgtgcta ccgtgtagtc taatgggtgg
     3361 ttgccttgag tgacccagct cattaatgca cgaatcaagg tggtgaaaaa tagaatttgt
     3421 ccgaaggttt tgaccacact taataagccg attaatactg ctctgggtaa atctacgcca
     3481 aacagaataa actgtaacgt taccaaagcg gcggcaatta atagtgccgg aaagcaaata
     3541 tttttaacgg ttggaatcag cttgccaacc ggtgaaacca tcggttcggt aattttaagt
     3601 aaggtttgtg aaatcggtaa acgaggatca acccgacaaa attgcagcca agttcttagc
     3661 accagcacaa aacttaaaaa gccaacaata agcgaaataa caggagctaa aaattccatc
     3721 tctttttctc tttctataca aaacaagcgg tcgtttttta gaaaaaattt gcaaattttc
     3781 agtaaaatct gaccgcttgt atcttattaa attaactagg caaattaagc ttgtgctggg
     3841 tagtcccacc aaatatcaaa taattcgctc acttgaacct cttttaagcc gttagtttct
     3901 aaccaagttt tcactaattg gcggtgagat tcatcacatt tgcctaattt ttctaagcag
     3961 actaaacctt cccagtttaa gtagccgttc gcttcaaggg ctaaaccgtt tggtcgaatc
     4021 acttcatcga taaaacgatc tacggtttca tcaatttggt caatgcctgt gccttcagca
     4081 aaggtgaatt taattaagaa acctaattct tggtattcac ctaagtgcat ttttttacgt
     4141 tggcgtgcgt tacgttgaat agccattttt tctctcctct atgaataaat catttctttg
     4201 taaaatataa atcccacacc ccgtgtccta aacgatgccc tcgctcttca aatttggtta
     4261 gcgggcggaa attcggacgt ggaataaaat cattagttgc tgatgtattt tgcaactcgc
     4321 tctcaaattg gcgtaatact tcaagcatat gttctgcgta attttcccag tcggtggcaa
     4381 aatgaataaa gccgttaggg cttaattttc tgatcacacg gctgataaat tcaggctgca
     4441 caatacggcg tttgtggtgt tttgcttttt gccaagggtc tgggaagtaa agctgtaagc
     4501 cacctaatgt accgtcagca atgctgtctc gcaaaatttc ggtggcatcg tggcaaatta
     4561 ctcttaaatt cttcacgcct ttttctaacg cataagcgat acaagccccc accccgggcg
     4621 tgtgcacctc aatgccgata tagttgcgat tcgggttttg ctctgccatt tccaccagcg
     4681 attttcccat tccgaagccg atttctaaca ctaccgggtt gttattgccg aaaatctgct
     4741 caaaattaaa gggcattggc tggtaatcta agcctaaatt tgcccagttg ttgttcatca
     4801 tatcacgttg ataatcgctc aaacgaccgg tacgcaatac aaaactccgc acttttcgta
     4861 aataacgccc atcttcggta aactcggctt gctcaacggt tttacgtttt ttatctgcaa
     4921 aagtctgttt ttctgacatt ttcttgcctt aaaacttcac taataccgaa ccccaagtcc
     4981 agccaccgcc gaatgcttca aggagtagta attgcccacg ttgaattcgc ccgtcacgca
     5041 ccgcttcatc taatgccacc ggcactgttg ctccactggt attggcatat ttatcaaggg
     5101 taaccaccac ttgatccatt tccatctcta attttttcgc cgttgcggtg ataatgcgta
     5161 aattcgcttg gtgcggaatc agccaatcta aatcggattt ttgtagatta ttcgcttcta
     5221 aggtttcttc taccacgctt gaaagttggt ttactgcaat tttaaaggtg gcattgccct
     5281 gcatttcaat aaagccggaa cgctcttcgc cacgcttttg gcttcttaag gttaagttat
     5341 tttctaaatc cggtgaggcg tgcaagtggg ttgaaataat acccagctct tcactcgcct
     5401 ctaaaatcac cgccccagct ccgtcaccaa ataatactac tgtgctgcgg tcggtttcgt
     5461 ctaacattct ggaattgatg tctgaaccaa taaccaatgc ctttttcact tgcccgttac
     5521 gcacgaattg atcggcaaca gttaaagcat acacaaatcc tgtacaagcc gctgccacat
     5581 caaaagcaat cgcgtcttca atctgaagca agccttgaat ttggcaagct gcacttgggt
     5641 aagcgtggga gttggtagtt gttcccacca caattaaatc aatgtcattt gcctcaattc
     5701 ctgccatttc cagtgcttgt tgagcggctt ttgcccccat tgttgccact gtttcgtcag
     5761 gctcggcaat acggcgttca cgaatgccgg aacgggttac gatccattca tcagaggtat
     5821 cgaccatttt ttctaaatca gcattggtac gcacctttgt cggtaaatag cttcccgttg
     5881 ctaaaattct actattcata tttttattat tctcaatcaa ttaaatgata atccgttatt
     5941 atagcttgaa aaccaacaaa tatataggct ttacaagcgg tcatttttag caaaaaagtt
     6001 gcattcacga acgattttgc actagaacca ccgcttgcta gtatttattt cgcttgagcc
     6061 tcttcgtata gccacttcgc tactcgcttg gcgaaataag ttagaatacc gtctgctcct
     6121 gcccgtttaa agcagagtaa tccctccata atgcactcac gctctttcag ccagccgttt
     6181 tggattgccg ccatatgcat cgcgtattcg cccgaaactt ggtaggcgaa ggttggcacg
     6241 ccaaaattct ctttcacacg ccacaccata tccaaataag gcatacccgg tttcaccatc
     6301 accatatctg ccccttcttg aatatccatc gccacttcgt gcaagccttc gttgccgtta
     6361 gccggatcga cttggtaagt gtatttatta ccgcctttta agttgccggc agaacctact
     6421 gcatcacgga acggtccgta ataattagac gcatatttag ccgaatacgc cataatttgc
     6481 gtattgataa aaccgttttg ctcaagggct tcacgaattt tgccgattcg accgtccatc
     6541 atatcgctcg gggcaacaat atccgccccc gcttctgcgt gcgataacgc ctgttttacc
     6601 aatacttcag tagtcacatc attcagtaca tagcctgttt catcaataat gccgtcttgt
     6661 ccgtgcgtgg taaacgggtc taacgccaca tcagtaatca cgcctaattc cggaaattga
     6721 gcttttaaag ctcgcacggc acgctgtgcc aacccttgcg ggttataggc ctcttctgcc
     6781 atcagtgatt ttttcacatc acccaccaca gggaaaagag ccaccgcagg cacgccatat
     6841 ttaaccagtt ctgcggcttc aactaaaagc tggtcgatag ttaaacgctc tacacccggc
     6901 atagaaggca cttgtactcg ctgattttcc ccttcgatga caaaaacagg gtaaatcaaa
     6961 tcattaacgg taagttgatt ttctgccact aagcggcggc tgaaatcgtg cttgcgtaaa
     7021 cgacgcatac ggcgtaaagg atattgggat tgaattactt gcatttttaa tttcctaatt
     7081 cttaaaatac ctattcttga aataagaaag gcatagcaaa caggtgctat gccttttcaa
     7141 aatattactg tgcaacctgc tctgatggtt catcatcatc tttggggcga taaaaccgag
     7201 caaatagcac accaacttca aacaataaac acattggaat tgccaataat gtttgcgaga
     7261 aaatatctgg tggggtgagc aacataccaa ttacaaatgc tgccacaata atataagggc
     7321 gttttgcctt taaatcttcg ggtgtggtta cgcctgccca acataacaag ataatcgcaa
     7381 ccggcacttc aaagcagatc ccgaatgcca taaaaatggt taaaacgaaa tcaagatagc
     7441 tactaatatc cgttgccatt gttacccctt ccggagcggt agaggttaaa aagccaaata
     7501 caagcggaaa tacaacataa taggcaaaag cgacaccaca ataaaacagc aatgtgctag
     7561 ataccaataa tgggtaaacc aaacgctttt cctgcttgta taaagcaggg gcgacaaacg
     7621 cccaaatttg gtacaaaata aaaggaactg ataaaaacac cgaaaccaca atggttaatt
     7681 taattggggt aaaaaacgga gtggctacat tggttgcaat cattgttgca ccgtctggta
     7741 aattgtccgt taaaggtgtt gccaataagg tgtaaatatc attggcccag taaaccaatc
     7801 cgcaaaacac caagagcaca cagataaaac tacgcagtaa tcggtttctc agctcaatta
     7861 aatgtgtaat cagaggttga gactcatcaa cttgcgacat tatttgcctc cgatttctgc
     7921 gctgattctg atgattgagg cgtagctaaa tcatcatctg gcggatagta agattccaac
     7981 gttaaaagcg attcgtccat ttctgcttgt tcagccagct catcagccga aagtggcttt
     8041 tctgtccgcg taacattaag ttgctcagat aaactatcca cttcaagcgg tttattttgc
     8101 gcattttttt gcaattcttg cgcctctaac acctggcttt cttgctcgat tttttgctga
     8161 atttctgcga cttgctcatc ggttaattta ggaattgtgc tgctttccgc agccgttttt
     8221 tccaactcat tttttgcaga attaagcgaa tcttgcaact gggtggctga cattttcaga
     8281 tcttccaccg ttttatttaa ttctggcgaa agggagctta aattcaactc ttctgccttt
     8341 ttaatgctct cttttaattc ttgcagtttc agctcttgag ccagttcatt ttgtacgttt
     8401 gcggctaaac ctcgaattgt actcacccag cccattacgg tacgaatcgc aatcggcata
     8461 cgtttcgggc ctagcaccac caagcccaca atcataatca gtactaattc agaaaaacct
     8521 atatcaaaca cggattaagc ctgctctttc tcttttgctt tctgctctgc tgaaattgca
     8581 tcttttgctt ccactttttc aaattcagca tcttttttct catctgccat tgcttttttg
     8641 aagcctttta cagattcgcc caaatccgaa cctaaagtac gtaatttctt cgtaccgaaa
     8701 agtaatacga tgattgcaac cacaatcaga agctgccaaa tactaatacc gcccataaaa
     8761 actcctttca tttaataggg aatagataaa ataaaacgct gtttattata tgttactttg
     8821 acatataaaa aagtaatttt gcaaaaaatt tgtcaaaaac aaccgcttat ttgcgttgac
     8881 tcaaaatcaa taccagtgga aataaagtta ataacggcac acttagccat atcggcaaag
     8941 attcaaattt ccaaaatgcg ccacagatca caatcgctga aattgacagc acaagaaaac
     9001 ggctatttgc gtttgaattc tgtgctttta aactttcgtt aatttccgct aaacggaaat
     9061 taatttgctt ttgctcttgt aaggctttaa acaatgcctc cggaaactcc gcaaaatgct
     9121 cccgatattg cggtaaacgt tgcttaatgt ctcgaaccat cgctttcaca cctacctgct
     9181 cattcagcca gttttgtaaa aacggttttg cggtttgcca taaatccaac tgtggataaa
     9241 cctgcctgcc caaaccttca atataaagaa gtgttttttg caacaacacc aactgcggct
     9301 gcacttccat attaaattct cttgccacat taaacaggtt gagcaaaacg tgtccgaatg
     9361 aaatttccga taacggctta gcaaaaatcg gctcacatac ctcacgaaag gcttgctcaa
     9421 atttatcaat atcggtatcc ggcggcgtcc agcccgattc cacgtgcatt aaggcaacac
     9481 ggcggtaatc tcggttgaaa aatgcgacaa aactttcggc taaatagcgt ttgtcattgt
     9541 ggttcaacgt gccgacaatc ccgcagtcaa tgccgatata ttgcggattt tccgggtgtt
     9601 ctctgttcac aaaaatattg ccggcgtgca tatcggcgtg gaaaaaactg tcacggaata
     9661 cttgggtaaa aaatacctgc acaccacgct ctgccagcaa tttcatatcg gtgctgttcg
     9721 cttccaactc ggcaatgtta gacactggaa tgccataaat ccgctccatc gcaatcaagt
     9781 ttttatggca aaaatcttga tacatttcag gcacatacag catttcgcta ttttcaaaat
     9841 tcgcccgaag ccgaatggca ttgtgcattt ctttgcgtaa atccagctcg tctaaaatag
     9901 ttttttcgta ctctcgcacc acttcaaccg cccgtagccg tttgccgtca ttcgataatt
     9961 tcgggataaa gtgagcaatt tcatacatca actctaaatc cgccttaatc accggctcaa
    10021 tgcccgggcg aatcactttt aacaccacat ctttgcctgc aagcggttga ttttggttaa
    10081 attttgccgt gtgaacctgt gcaatcgaag cagaagctaa ggcagtttca tcaaagtttt
    10141 caaaccaagt ttcaagcttt ccgcccaaag cctgctcgat aatttgacga gcgattttgc
    10201 cgtcaaacgg ttcaacatta tcttgtagca aggcgagctg gtcggcaagc tccggtgcaa
    10261 acagatcacg tctggtagct aacatttgcc cgagcttgat ccaaaccggt ccaagctctt
    10321 gcaaagccaa acgtaaacgt acaccgtaag gtttgtctga atgttgattc ttcacccaaa
    10381 acaaagcctt acgccctagc tttattttgc gggtaattgg cagattcgga atggcttcat
    10441 caataccata gcgaagaaaa gtgcggataa tatggtaaaa gcggttgaga tttttgatgt
    10501 tcattgaaat atatatttaa tggtaattag gaagatttta gcaaaattct gtaaaaattt
    10561 aaccgcttgt tgggctacta tgggtatttc tgctcaaaat tctcaatttc tttctgtact
    10621 tccgcaataa gtgtttgttc agaggggagg taaagttggt attggctggc aaaaatttta
    10681 ttctgatttt ccggtagcga aaattttacc accgcatcat ttttatcggc acaaagcaag
    10741 acaccaatag tggcattttc gtgcggcagt ttttcaactc ggtcaaaata attgacgtac
    10801 atctgtaatt gccccaaatc ttgatgggtg agcttgtggg ttttaatttc aaaaatcaca
    10861 aaacattgaa gtaaacggtt gtaacaaacc aaatcgacaa aaaaatcatc accgtctagg
    10921 tgcaaacgct tttggcgtgc gataaacgag aaaccgttac ccaattctag tagaaaatcc
    10981 tgcaaatgcg taatgatggc ttgctctaaa tccttttcgt aataagcact ttcccgtttt
    11041 agtccgagaa attccaatac catcgggtct ttaatgagct gtttcggatc aaccggctgc
    11101 tgctcatttc tggcaacagc aagcacactt tccttatcat tactgagcaa taatcgctcg
    11161 tatagactac tattaatttg ccgttccagc tggcgtgaac tccaattatt cttacaactt
    11221 tcagccaaat aaaattccct tttgtcagaa tcggagattt gaattagacg acgatattgt
    11281 gtccaattca attgcgaccg cagtgcggtc gcaattggaa acgcacgata aaactggcga
    11341 taacgctcta attgacggct acaaaaacca cttccaaatt ctggctcaag ctcttttgcg
    11401 agcattttaa tcaggtatgt tccataatca gcacgctctt gcccttgttg ctcctgttca
    11461 aaaatccgtt ttccgatgtg ccaatacatc agcacacgtt ggaaatctac cgcacgaacc
    11521 gcattttcac gagcttgagc aataatttgt ttaatatctt agatcatcgt tgtttctatt
    11581 aacataaaag cctccgtttt ggattaagtt tatgcttaat ctatccggag gcaatttctt
    11641 tcactcaact tttcgagtca tatcacaatt ttattttgtt aaatttaatt ttgcacaaac
    11701 gcttgcgttt gaacatcagc tttgctgatg gctcgaagag cgaacgtagt gagtaaattt
    11761 ttgctctaat ttgagcgctt gttgggcaag ttcttcgact tggtcataga aatgcaccgc
    11821 ctgtaaacga tgcaccaaca ccggtctttc ttggattaaa ttctcaacca aatgttgatt
    11881 attttgctca aattgagctt ttactttacc tagcaatttt ttagcaagat cggtgctagt
    11941 ttgagccact acatcgccaa caaaagggga aagcagttcg gcagggtctt tttcgagctg
    12001 ttcaagtaat gcagtgaaat gttgcaacac ttgaatatcg cccgtcagca ccaacgattt
    12061 attattaatc agctcggtta atttttgctt atccgctagt ttcggcaggg tgtcaaatgc
    12121 cagttgcacc gtacaatctg cttccccctc gtagttgcca agccaatcgg ttcggctttc
    12181 gctaaacaac acaaaaaagt cgattttagg cgaagttagg gcgattttta gcacttttcc
    12241 ggacaattta cgcaaattcg gctcaatatg aggcgagcgt ttaagtaacg cattaaaagc
    12301 ggtttcaatc agaccaaagg taaattgcgg gagcattaat tgttgtttta cattatttaa
    12361 cattcgtacc tacttaccct cttcactttt gggagaagga tagattgttc ttcattaaga
    12421 agcaaaatca gggagagggg tatttgcaaa atattgaata aatatgaccg cttgccccct
    12481 ctctctgctt atttcgctaa acgctcataa gcggtctctc tcccacaaag ggagagagtc
    12541 atttaagaga aaactaaaat ttataacctc tgtgtaatgc cacaatgccg gcacttaagt
    12601 tgtagtaatt cacgctttca aagccagttt gttccatcat tgcttttagc tcgtcttgtt
    12661 tcgggtgcat tcggatcgat tcagctaaat agcggtaact ttcggcgtca tttaccacca
    12721 cttcgcccac tttcggcaaa atattgaatg agtagaaatt ataaagctgg ctgattgggt
    12781 cgataatcgg ttttgagaat tccaacacaa gtaagcgacc gcccggtttt agcacgcgga
    12841 acattgaacg tagggctttg tctttgtcgg taacattacg caagccaaaa ctaatcacaa
    12901 tacaatcaaa agtgttatca gcaaaaggca agcattcggc attcgcttga acgtagctca
    12961 catttccaac cacgcctaaa ttgcgtaatt tttcccgccc gacttccaac attgagctgt
    13021 taatatcggc taaaatcacc tcaccacttt caccaacaat gcgagagaat tttgcggtaa
    13081 aatcacccgt gccgccggca agatccagca ctttttgccc tttacgcacg ccactgcaat
    13141 caatggtaaa gcgtttccac actcgatgaa tgccgaaaga aagcaaatcg ttcattaggt
    13201 catatttgcc tgccaccgag tgaaacacat ttgcgaccag ttgctgtttt tcttctttcg
    13261 ctacggtttt aaacccaaag tgggtggttt ctgccgattg ttgcacttct tgttgcactt
    13321 catctttagg tgctaattgt tctacatcgc tcattttctt gtctctagtt gcaaaattta
    13381 ggcgtaacca tagcaaaaaa gcggtcgttt ttctttaact ttttgcaaat tttcttaagt
    13441 aaataaccgc tttcttgact agaaaagcca aattctgtaa cattcgcaca ctattttttc
    13501 ttgaggatta cacattttgg acagtcatag tcgatactta cccgtttaac ctatcttgtc
    13561 taacctcaat gttaccgaca aggtcggtaa tgctcgccta gtatctttgt tcctttttgt
    13621 tccaagcctc ctaactattt ggagctaaac atgatccgtg cttttggact agataacgca
    13681 tgtttaatca gcgttgatga aactaaccca actttattaa atgatgcgat ttggattgat
    13741 ctcatcgatc catcagaagc tgaacgaacc gtattagaaa accgcttaga ccaaacactc
    13801 gctgaagaac gtgaattgga agacttagag gcgtctgccc gtttctttga agatgaagac
    13861 ggtttgcacc tgcactcgtt cttttactgc ttagatgatg acgattacgc cgatattgcc
    13921 actgtcgcct tcactattcg tgacgggcgt ttgtttacct tgcgtgatcg ggatttaccc
    13981 gcatttcgct tgtatcgaat gcgttcccgc cgtgagaaat tgattgacag caacgcctat
    14041 gaactcttac tcgatttatt tgagaccaaa atcgagcagc ttgcagacgt aattgaagaa
    14101 gtctatgctg acttagaaaa attaagtcgg gttattctaa acggtcagca agaaaatgag
    14161 aatttcaatg atgccctttc tcgcttaact gaatttgaag atgcaagttc aaaagtgcgt
    14221 ttatgtttga tggatacgca acgggcgtta agtttcttac tgcgtaaaac ccgtttgccg
    14281 aataatcagc tagaacaagc ccgtgacatt atgcgagata ttgaatctct gcaaccgcac
    14341 aatgaatcct tgttccaaaa agtgaatttt ttaatgcaag cggcaatggg ttatatcaat
    14401 attgagcaga accgaattat gaaattcttc tcggtggtgt cagtgatgtt cctacctgct
    14461 acgctggttg cttctactta cggtatgaac tttgaattta tgccggaact tcatttccaa
    14521 tatggctacc ctatggcgat tggtttaatg attgttgccg cctccgcccc ttatctttat
    14581 tttaaacgta aaggttggtt ataatttatt tttaaagcct atagttgaat aacttaggct
    14641 ttcttatttt aatgaatatg ttcacctcta aaaacaaata aagattaaaa
//
LOCUS       DANLVT010000058        14367 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.058, whole genome shotgun sequence.
ACCESSION   DANLVT010000058 DANLVT010000000
VERSION     DANLVT010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14367
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.058"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            120..1841
                     /locus_tag="PXC99_001476"
     CDS             120..1841
                     /locus_tag="PXC99_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 3 large subunit"
                     /protein_id="HDL5417928.1"
                     /translation="MKKLSGAEMIVQSLKDEGVEYVFGYPGGSVLDIYDAIHTLGLNH
                     VLVRHEQGAVHMADGYARSTGKVGCVLVTSGPGATNTITGILTAYTDSVPLVILSGQV
                     PSSLIGTDAFQESDMIGISRPVVKHSFLVKNTEEIPEIIKKAFYIASTGRPGPVVIDI
                     PKDVVNPLNKYPYEYPQEVSMRSYNPTVQGHKGQIKKALKALLVAKRPVLYVGGGVIS
                     AEGSPEITEFAQKLNLPVTCSLMGLGAYPASDKQYLGMLGMHGTFEANNAMHESDLIL
                     GIGVRFDDRTTNNLAKYCPNAKVIHVDIDPASISKTVQAYIPIVGSAKDVMEEFLSLL
                     GEENLAKNQVDLTAWWQQIDAWKARNCLAFEENSDVIKPQQVIRMIHKLTNGEAYVAS
                     DVGQHQMFAALHYGFDKPRRWINSGGAGTMGFGLPAAMGVKFAHPDATVVCVTGDGSI
                     QMNIQELSTAKQYDTPIVIVSLNNRFLGMVKQWQDIIYSGRHSQVYMNSLPNFAKLAE
                     AYGHVGIQIDHPSELEAKLTEAFSIKDKLVFVDVLVDETEHVYPMQVRGGAMNEMMLS
                     KTERTDA"
     gene            1834..2325
                     /gene="ilvN"
                     /locus_tag="PXC99_001477"
     CDS             1834..2325
                     /gene="ilvN"
                     /locus_tag="PXC99_001477"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HDL5417929.1"
                     /translation="MRRTLAVLLENESGALSRVVALFSQRGFNIESLTVAPTDDPSLS
                     RMTIVAQGEEQVLEQIEKQLHKLIDVFKVSNLSAYEHVEREVLLVKVRATGSSRDELK
                     RMVDIYRGQIVDLTPKLYTIQLSGSTEKLNAFIEAVKEETTIVEIVRSGVISLSRGDK
                     NAL"
     gene            complement(2404..3291)
                     /locus_tag="PXC99_001478"
     CDS             complement(2404..3291)
                     /locus_tag="PXC99_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5417930.1"
                     /translation="MKKHQPIKGAMAIITAGVLFACINTLIPKLTSISPIDSNVIALV
                     QYLAAFIFLVPSMNNIGFFSSLKTEHFGQHCFRIFLSAIGIQCWTMALANQLPIWQGI
                     ALLMTSPLFVTIGSGLFLKEKVDKKRWIATAMGFVGAMIILEPWSDHFEMIALLPIAA
                     AFFWAGYSLMVKKLSRYDSPTTMVAYLFILITPFNLLIALTNLSPSGFSLPSWSDFGF
                     LILLGFFTALAQLAVAKAYSVADASYIQPFDFIKLPLNVLAGWLVFNWVPPGKLWLGA
                     AIIIAATIYITHAETKQSN"
     gene            complement(3345..4661)
                     /gene="argA"
                     /locus_tag="PXC99_001479"
     CDS             complement(3345..4661)
                     /gene="argA"
                     /locus_tag="PXC99_001479"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HDL5417931.1"
                     /translation="MQNTELALAQWFRQSTPYVNMHRGKTFVIMLDGDVIESPNFVNI
                     INDISLLHSLNIKLVIVFGARPQINQLLKQNHIEPEYYHNIRVTNPQSLEYVKQAVGK
                     VHYDFFARLSLRLPHSEVINVVSGNMILAQPIGVVDGVDYTLSGKIRRINIESIKQQL
                     AQNSIVLLGPIAPSVTGEMFNLPFEDIATQVAIKLRADKLIGFCEEQGILDENGKPIP
                     DYLPQDGETLLQQLIERGEYHTPKARFLQAAITVCREGVKRSHLLSYKEDGSLLQELF
                     SRDGIGTQFSMESSEQVRIANSSDIPGLLDLIRPLEQQGILVKRSREQLEMEITNYTI
                     IERDGVVIACAALNPYPEEKMAEMACVAVHPDYRDSSRGDILLENIQKRAVQLGMEKL
                     FVLTTRTTQWFQERGFRLAGAQDLPRYKRENYNYQRRSKVLILPLW"
     gene            complement(4790..4975)
                     /locus_tag="PXC99_001480"
     CDS             complement(4790..4975)
                     /locus_tag="PXC99_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1508 domain-containing protein"
                     /protein_id="HDL5417932.1"
                     /translation="MYFEIYKDAKEEFRWRLKAGNHEVIATNQAYTTKQGCQKGIEAV
                     KKVTPETEVKDLTKAEA"
     gene            complement(5091..6413)
                     /gene="pepP"
                     /locus_tag="PXC99_001481"
     CDS             complement(5091..6413)
                     /gene="pepP"
                     /locus_tag="PXC99_001481"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro aminopeptidase"
                     /protein_id="HDL5417933.1"
                     /translation="MDLAYLAKMPQEEFTARRERVLEQMQDNSALLVFTESEKRRNSD
                     SEYLFRPDSYFWYLTGLAEPKSAVLLVKSEGKTESIIFVRKKDPLMETWNGRRLGIEE
                     APKTLQLNAAFDIDDIETVLAKKLENLTACYCALGIQEWGDNILFATFEKMKVNRQKV
                     PTTLIDWQPMLSEMRLIKSEFEIALIQQACHISSMAHIRAMKQARPNRYEWEIEGEIQ
                     HEFSRFGARFPAYNSIVAGGENACILHYNENDQVLKGGDLLLIDAGAEFAYYAGDITR
                     TFPINGKFSEPQKELYELTLTMQKEAINLLVPNSSIKAANDKAVQILTQGLVRLGILN
                     GDVESLIEQKAYRQFYMHGLGHWLGLDVHDVGDYGTERDRPLQIGMVLTVEPGIYIPK
                     DADVPEQYKGIGIRIEDNLLITEYGNKNLSSGCPKEIADVEQLMQSLN"
     gene            6629..6952
                     /locus_tag="PXC99_001482"
     CDS             6629..6952
                     /locus_tag="PXC99_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5417934.1"
                     /translation="MKLSSELQNQINQLNQLRKQALKQEQDEQKLFEKNKIEDLPHFG
                     TQLNAQRKLLGIELTTLEMQTGISSSTLKRLFKDPSQVKFQTICIVAETLGFNLCAIN
                     THKQE"
     gene            complement(7029..8047)
                     /gene="glpX"
                     /locus_tag="PXC99_001483"
                     /pseudo
     CDS             complement(7029..8047)
                     /gene="glpX"
                     /locus_tag="PXC99_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484632.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
     gene            8244..8462
                     /gene="zapB"
                     /locus_tag="PXC99_001484"
     CDS             8244..8462
                     /gene="zapB"
                     /locus_tag="PXC99_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapB"
                     /protein_id="HDL5417935.1"
                     /translation="MSLSVLDQLEEKIKQAVETIQLLQLEVEELKGKNDAAKQENDTL
                     RSEYEQLKVEQQNFQDRLRSLLGQIDNV"
     gene            8518..9099
                     /locus_tag="PXC99_001485"
     CDS             8518..9099
                     /locus_tag="PXC99_001485"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014064645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HDL5417936.1"
                     /translation="MAKLYFYYSSMNAGKSTTLLQSSYNYQERGMNTLVYTAAIDDRF
                     GVGKVNSRIGISQEANLFTADTNLFAEIKALHSNKALHCILIDEAQFLTKTQVYQLSD
                     VVDKLKIPVLCYGLRTDFQAELFEGSKYLLAWADELEELKTICDCGKKAHFVVRLNEK
                     GEAIKDGEQIQIGGNDRYLSVCRYHYKQKLGKL"
     gene            complement(9190..10308)
                     /locus_tag="PXC99_001486"
     CDS             complement(9190..10308)
                     /locus_tag="PXC99_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfatase maturase"
                     /protein_id="HDL5417937.1"
                     /translation="MTTTYFHLMAKPSSFHCNIQCEYCFYLSKEQTIPPEKSQFMNDE
                     TLQNYIRHYIEANQSQRVDFVWQGGEPTLLGLDFYKQAVKYQQKFANGKQITNAIQTN
                     GIALNRQWASFFKENHFLVGLSIDGLSDIHDRYRISTNGKPTFERVKSAVDLLKEVGV
                     EFNTLTVVNDRNWQRGRETYQALKALGSRYMQFIPVVESHKGELQPFSVPPQGYGQFL
                     VDVFHEWLPDRGQIFVIEFDNLLGQWLGYPSNNCVFRPTCGSSLVVEACGDVYSCDHF
                     VYPDYHIGNLNQQQLAEIVSSAAQRQFGQNKQAKLSQACLNCKFRILCHGGCPKHRIV
                     PQANSENHNYLCPSYQQFFAETSSVMRQMSEQIRFAGK"
     gene            complement(10398..11846)
                     /locus_tag="PXC99_001487"
     CDS             complement(10398..11846)
                     /locus_tag="PXC99_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HDL5417938.1"
                     /translation="MNNIIYILLDQVRKDMLGTYGHQVVKTPNLDRLAKDGIRFNNAF
                     TPASVCGPARTSLFTGLMPSSHGIIKNGEKGGTGEIPQQNPNIAGVEGYNSFVIGKWH
                     VGTKSVPEDYGIAGHNFDGYGYPGSQVYKNLVFNQPPTHSNRYREWLAEKGYDAPEVS
                     RAYFGDNPHLRVQELCGLLSGSREQTIEWFIIDEAKKYIQASLDEKKPFFAWINFWGP
                     HTPCVVPEPYYSMYDPSQVVLDESFFKPLEGKPNHFRTISQMWGMWEASEDRWKEVIS
                     KFWGYITLIDDAIGELFRFLEENNLYENTFLVATADHGDAMGAHKMIEKGEFMFETTY
                     NIPLIIKDPHSTRVNEVDDNLVYLHDLTSTVYDVANQPIPTAFQGESILPITRQSQNN
                     DRKGLLCQLAGHFVYFEQRMWRRKDYKLVFNATDRCELYDVRKDPEEMHNLFYDEAYQ
                     AVKKEMLEEMRQEMKRLNDPLENWVYRIIDEI"
     gene            complement(11993..13690)
                     /locus_tag="PXC99_001488"
     CDS             complement(11993..13690)
                     /locus_tag="PXC99_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="solute:sodium symporter family transporter"
                     /protein_id="HDL5417939.1"
                     /translation="MLLTIITFLVVTGLVGYISWLKTRNDDLSTSKGYFLAGRGLSAT
                     VIGCSMVLTSLSTEQLIGVNANSYAGNFSIIAWTVPAVIPLCFLALYLLPKYIRNGYT
                     TIPEFFENRFDRQTRLIMSGLFLVFYLFIVIPTALYTGAIAFNKIFNLETAFGLSYGA
                     AITYTVIAIGIVGAIYAIFGGLKAVAVSDTWNAVLLVIGALLVPVFALIYLGNGSMAE
                     GVKIITTTHVEKWNAVGSATDAVPWPTIFTGIMVVHFFYWTTNQAIVQRALGARDLKA
                     GQKGILIAALFLLLLPLILNLPGLLSFHILGEGLKPIDVSYPELVNKTFPTVLQGFFI
                     AALFGAILSTFNSFLNSAATIYCKDLLPSISKKQFTDAELISYAKKVSAVMAVITMIF
                     GPLLMFGTDGIFLLTKRFAGFVNIPIVALFVIGLFNKTVSGKAARIALLAHVILYFCI
                     VWVFDVKINFVYVQAGLFVFDVALMLILGIFLKRATPYEDNKINHANVDLTSWEYAPL
                     AVASIVLGLFTLYAFLSPLGLASPDGNPAMVLAVYAVLQAVVCVVFFAKCKGKKAVN"
     gene            complement(13834..14355)
                     /locus_tag="PXC99_001489"
     CDS             complement(13834..14355)
                     /locus_tag="PXC99_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HDL5417940.1"
                     /translation="MSCQLSVMSDLEKGVVIYSQGYHAREFYFLKSGLIGLYHMLENG
                     KESLVRVYKANDYFGFRTFFGDNRYHCSARVLQPAELIRITPLNFIEFWSNNSALIIS
                     LLKQLSTELQDAEHRLSMVSYQKTQERVMNSIHYLHQRYPNYHWTNREIAEFAGCETE
                     TAIRLRRELKKIS"
BASE COUNT         4238 a         3098 c         2928 g         4103 t
ORIGIN      
        1 agaatataaa tctagcaaat ctagcatttg atcccataat aagaactaga catcaataaa
       61 attttactgc aaaatccaac catcttagag aagaaaatgc tattttgttg gaggattcaa
      121 tgaaaaaact ttctggtgca gaaatgattg tacagtcctt aaaggatgaa ggcgtagaat
      181 acgttttcgg ctatccgggt ggctctgtac tcgatattta tgatgcaatt catacacttg
      241 gattgaatca cgttttagtt cgacacgagc aaggtgctgt acatatggct gatggctatg
      301 cccgttcaac aggtaaagtc ggctgtgtgc tagtgacttc aggtccggga gcaacgaata
      361 caattactgg tattttaact gcttataccg actctgttcc gttagtaata ctgtcgggcc
      421 aagttccatc aagtttaatt gggacagatg cattccaaga aagtgatatg atcggcattt
      481 ctcgtccggt tgtaaaacac agtttcttag taaaaaatac agaagaaatt cctgaaatta
      541 tcaaaaaagc cttttatatt gcatcaaccg gtcgaccagg cccggtagtt attgatattc
      601 ctaaagatgt agtcaatcca ttaaataaat atccctatga atatccgcaa gaagtatcaa
      661 tgcgttctta taacccaaca gttcaagggc ataaagggca aattaaaaaa gcattaaaag
      721 cactattagt agcaaaacgt ccagtgcttt atgtaggcgg tggtgtaatt agtgcagagg
      781 gttcgccaga aattacagag tttgcacaaa agctaaatct acctgtaacc tgttcattaa
      841 tgggattagg tgcttatcct gcctctgata agcaatattt aggtatgtta ggcatgcacg
      901 gcacttttga ggcaaataat gcaatgcacg aaagtgattt gattttaggt attggggtac
      961 gttttgatga tcgtacaaca aataacttag caaaatattg cccgaatgca aaagtgatcc
     1021 acgtggatat tgatccagcc tcaatttcca aaacagtaca agcttatatt ccaattgtag
     1081 gcagtgctaa ggatgtaatg gaagaatttt tatctttatt aggtgaggaa aatcttgcaa
     1141 aaaatcaggt agatttaacc gcttggtggc aacaaattga tgcttggaaa gctcgtaatt
     1201 gcttagcctt tgaagaaaac agtgatgtga ttaagccaca acaagtgatt agaatgatcc
     1261 acaagttgac caatggggag gcttatgttg cctcagatgt tggacaacat caaatgtttg
     1321 ctgcattgca ttatgggttc gataaaccac gtcgttggat taattcaggc ggtgcaggca
     1381 caatgggctt tggcttacct gctgcgatgg gggtaaaatt tgcccaccct gatgccactg
     1441 ttgtttgtgt aaccggtgat ggtagtatcc aaatgaatat ccaggaactt tccaccgcaa
     1501 agcaatacga cacaccgatt gtgattgtca gcttaaataa ccgtttctta ggtatggtga
     1561 aacagtggca agatattatt tactctggcc gccattcaca ggtgtatatg aattctctac
     1621 ctaactttgc taaattagca gaggcttatg gccacgttgg gattcaaatc gaccaccctt
     1681 ctgaattgga ggcaaaatta actgaggcat tctcaattaa agataagctt gtatttgttg
     1741 atgtattggt cgatgaaacg gaacatgttt acccaatgca agtgcgtgga ggagcaatga
     1801 atgaaatgat gttaagtaaa acggagagaa cagatgcgta gaacattagc cgtattatta
     1861 gaaaatgaat caggtgcatt atctcgtgta gttgcccttt tctcgcagcg tggttttaac
     1921 attgaaagct tgaccgttgc ccctactgat gatccaagcc tttcccgtat gacaattgtc
     1981 gcgcaaggcg aagaacaggt gttagaacaa atcgaaaagc aactacacaa actcattgat
     2041 gtgtttaaag tgagtaactt aagtgcttat gaacacgttg agcgtgaagt gttattggta
     2101 aaagtgcgag ctacaggttc atctcgtgat gaactgaaac gtatggtaga tatttaccgt
     2161 gggcaaatcg tagatttaac accgaaactt tacaccattc aattatccgg ttctaccgag
     2221 aagctcaatg catttattga ggcagttaaa gaagaaacaa cgattgtaga gattgttcgc
     2281 tctggcgtga ttagtctatc tcgtggcgat aaaaacgctc tgtaagcggt caattttagc
     2341 ttaaaatttg caaatccctt tatctttgag ataaagggat ttttatgtag cgtgaatttg
     2401 ttgctaatta ctctgtttag tttcagcgtg agtaatataa atggtcgcag caataataat
     2461 cgcagctcct agccataatt tacccggtgg cacccagtta aatacaagcc aaccggctaa
     2521 tacgttcaaa ggtaatttaa taaaatcaaa cggctgaatg taggaagcat ctgctacact
     2581 gtaggctttg gctaccgcca gttgcgctaa cgccgtaaag aaaccaagta agattaaaaa
     2641 gccgaaatcg ctccaagaag gcagactaaa cccactaggg ctaaggttcg tgagtgcaat
     2701 caacaaatta aaaggcgtaa ttagaataaa caggtaagcg accatcgtag ttgggctatc
     2761 gtaacgagag agttttttca ccattagcga ataacctgcc cagaaaaaag ccgcggcaat
     2821 cggcagtaac gcaatcattt caaaatgatc gctccaaggc tctagaataa tcatcgcccc
     2881 aacaaacccc attgcggttg caatccaacg ctttttatcc actttctctt tcaaaaacag
     2941 accggagccg atggtcacaa acaatggaga agtcatcaat aacgcaattc cctgccaaat
     3001 aggtaattgg ttagcgagtg ccattgtcca acattgaata ccaatcgcag atagaaaaat
     3061 acggaaacag tgttgcccaa aatgctcggt ttttaatgaa gagaagaaac cgatattatt
     3121 catgctggga acgaggaaaa taaaggcagc taaatattgc accaatgcaa tcacgttcga
     3181 gtcaatcggt gaaatggacg ttaatttggg aattaaggta ttgatacagg caaataacac
     3241 accggcagta ataattgcca tagccccttt gatgggttga tgttttttca tagttctcct
     3301 tttatagttc tcttggtaac aagcggtcaa aaacattgaa tattttacca aagtggtaaa
     3361 attaatactt tagaacgacg ttgataattg taattttccc gtttatagcg aggtaaatct
     3421 tgggcacctg ccagcctaaa tcctcgctct tggaaccatt gtgtggttct tgtagtcagc
     3481 acaaagagtt tctccattcc cagttgcact gcccgttttt gaatattttc cagtagaata
     3541 tcccctcttg aggaatcacg ataatcaggg tgaaccgcca cacacgccat ttccgccatt
     3601 ttttcttccg gatacgggtt aagtgccgca caagcaatca ccacaccatc acgctcaata
     3661 atggtgtagt ttgtgatttc catttctaat tgttctcgag agcgtttgac taaaatgccc
     3721 tgctgttcaa gtgggcggat taaatccaat aatcccggaa tatcactgga attagcaata
     3781 cgtacctgtt ccgagctttc cattgagaac tgtgtgccaa taccatcacg agagaataac
     3841 tcttgaagca atgagccatc ttctttatag cttaataaat gcgagcgttt cactccctct
     3901 cggcataccg tgatcgccgc ctgcaaaaac cgagctttcg gggtgtgata ttcgccacgc
     3961 tcgattaact gctgtaacaa ggtttcgcca tcttgcggaa gataatctgg aattggcttg
     4021 ccgttttcat ctaaaatccc ctgctcttca caaaaaccga ttaatttatc ggcacgaagt
     4081 ttaattgcaa cctgtgtggc aatatcttca aacggcagat taaacatttc accggtaaca
     4141 gacggggcaa tcggaccaag taatacaatc gaattttgtg ccagttgctg cttaatgctc
     4201 tcaatattaa tacgacggat tttaccgctt agtgtataat ctaccccatc caccacgcca
     4261 atcggctgag ctaaaatcat attaccactg actacattaa tcacttcaga atggggtaaa
     4321 cgcaaagaaa ggcgggcaaa gaaatcataa tgaactttcc ctaccgcttg tttcacatat
     4381 tctagcgatt gtggattagt cacacggata ttgtggtaat actccggctc aatatgattt
     4441 tgttttaaca attggttaat ttgcggtctt gccccaaata caatcactaa tttgatattc
     4501 aggctgtgca ggagactgat gtcattgata atattgacaa aattcgggct ttcgataaca
     4561 tcgccatcaa gcataatcac aaaggttttg cctctgtgca tattaacata aggtgtagat
     4621 tgcctaaacc attgagctaa tgcgagttct gtgttttgca tatatttcct ctttataata
     4681 taaacgcata ttatcttttt tagaaaaatc cgcaagcctt aaattgaata attaagcatt
     4741 atatttgcat aaataacaaa gccctgaaat aatatcaggg ctttatagat tatgcttcag
     4801 ctttggttaa atcttttact tctgtttcag gtgtaacttt tttaactgct tcaatgcctt
     4861 tttgacaacc ttgcttagtc gtataagctt ggttggttgc aataacttcg tggttacccg
     4921 cttttaaacg ccaacgaaat tcttcttttg catctttgta aatttcaaaa tacatataaa
     4981 cactccttcg tgttgtgatt gcccaaacac tgtgtttgtg tcgggttagc ttaagctaaa
     5041 ttccccaaaa tatcaaagca agcggtcatt tttttacaaa aatttgcgaa ttaatttaac
     5101 gattgcatca actgctcaac atccgcaatt tctttagggc aaccgctgct taagtttttg
     5161 ttgccgtatt cggtaatcag caaattatct tcaatccgaa tcccaatacc tttatattgc
     5221 tccggtacat ccgcatcttt aggaatatag ataccgggtt caacagttaa caccatacca
     5281 atctgcaaag gacgatcccg ctccgtgccg taatccccca catcgtgaac atctagccct
     5341 agccaatgcc ctaatccgtg catataaaat tggcgatagg ctttttgctc aatcaggctt
     5401 tccacatcac cgtttaaaat tcctaagcga accaagccct gcgtgagaat ctgtacagcc
     5461 ttatcgtttg ccgctttaat cgagctgttt ggcacaagaa gattaatcgc ctctttttgc
     5521 atagttaagg ttaattcgta cagctctttt tgcggttcgg agaatttccc attaataggg
     5581 aaggttcggg taatatcgcc ggcgtaatac gcaaattccg cccctgcatc aatcagtaat
     5641 aaatcgccgc ctttaagcac ctgatcattt tcattgtagt gaagaataca ggcattctca
     5701 ccgccggcaa cgattgaatt atatgccgga aaccttgctc caaaacggct aaattcgtgt
     5761 tgaatttccc cctcaatttc ccactcataa cgattcgggc gagcttgttt catcgctcga
     5821 atatgtgcca ttgaagaaat atgacacgcc tgctgaatta aggcaatttc aaattctgat
     5881 ttaatcaacc gcatttccga taacattggc tgccaatcaa tcaaggttgt cggcactttt
     5941 tgccgattga ctttcatttt ttcaaatgtt gcaaacaaaa tattatcgcc ccactcttgt
     6001 atccctaacg cacaataaca agcggtcaga ttttctaatt tttttgcaag aacggtttca
     6061 atgtcatcaa tatcaaaagc tgcgttaagc tgtaacgttt ttggagcttc ctcaatccct
     6121 aaacgtctgc cattccaggt ttccattaaa gggtcttttt tacgcacaaa aataatactt
     6181 tccgttttac cttcgctttt taccagcaat acggctgatt taggttctgc caaaccggtt
     6241 aaataccaaa agtaactatc aggtctaaac aagtattcag agtcactatt acggcgtttt
     6301 tccgattcgg taaaaaccaa taacgcagaa ttatcctgca tttgctcaag cacacgctca
     6361 cggcgtgcgg taaattcttc ttgtggcatt ttagccaaat aagcgagatc cattatttct
     6421 cctttttatt atatctatat cgaaacctgc cttattttag cacaaacgca gcataaattc
     6481 agcctaacca aaacagatga aagattatat ttgagatctt gattgcaaaa acaaaacaga
     6541 ttaagattaa atataacctt tacatatcta aacaggttat atttaaccta tgaacacata
     6601 aataatctac ttttagctca aaaataaaat gaaactatca agcgaactac aaaatcagat
     6661 aaaccaacta aatcagttac gaaaacaggc actcaaacaa gagcaagacg agcagaaatt
     6721 gtttgaaaaa aataaaattg aagatttgcc acattttggc acgcagctta atgctcagag
     6781 gaaactatta ggcatagaat taaccaccct tgaaatgcaa accggcattt caagctctac
     6841 cctaaaacgc ttatttaaag acccaagcca agtgaaattt cagacaattt gtattgtggc
     6901 agaaacactc ggctttaatt tatgtgcaat taatactcac aaacaagagt aagcgtgaca
     6961 atgtagtgat tttgattact ttgggaagac aaaaaatcgg gctaaaagcc cgatttatca
     7021 gagaaaagct ataaatccaa taaagaaagg agttcgttat ctttacgatc gacataatgg
     7081 tcggattgaa ttttacgaat ggttctagat ttgccacgaa taagtaaggt ttcagtgctg
     7141 gcaatattgc ctctacgttt aatccctttt aacaattcac ctgaagtaat gccggttgca
     7201 acaaagacga tattgtcatc acgcaccaaa tcttctaatt tcaacaccgt attcaccggt
     7261 acattcattt cattacagcg taaaagctct ttttcggtag cagttaaatt ttccgggcta
     7321 ttccccttca cttggttgcg aggaattaaa cgtgcttgca tatcgccacc caatgcacga
     7381 accgcagccc ccgccactac cccttcaggt gctccgccga taccataaag cagatccaat
     7441 tcgctctctg gcaaacagca ttgcaccgca gccgcaacat cgccatcagg aatcgcaatc
     7501 actcttaccc ctaatttttg cacatcggca attatttttt cgtggcgagg cttagcaaga
     7561 tagcaatggt taattgggaa agtaatttgc cctttttcga ggcgacacgg cgaagatttt
     7621 gttcaagcgg aagatttaaa tcaatcattc ctttgcattc ctgccccacc actaattttt
     7681 ccatatacat atcaggggct tttaaaaagg tttctttgcc gcctgctgct aataccgaca
     7741 acgcatttgc ctgccccatt gcagtcatac gagtaccgtc aatcgggtca accgcaatac
     7801 tgatttcctc atcttctagg cgggatagac cgattttctc gccaatataa agcatcggtg
     7861 cttcgtcaat ttcgccctca ccaattacca cttcgccacg gatttccatt tggttcagca
     7921 taaaccgcat tgctttcacc gcagcttcat cagcggcatt tttatcccca cggcctagcc
     7981 aagagtaagc tgctagagcc gctgcttccg taacacgaga aaattcaaaa gaaagagttc
     8041 gtttcatttt tgttccttag tttcttgaaa gaaaaacttt aaaagaagag agattatatt
     8101 ttatcagtaa cctgcaagct acgttactaa aaaatcagcg tttgaataaa aattcacaaa
     8161 tagccaaact tttttataaa aataaagtca gatttagagt ataatcttta caagttttta
     8221 tattatttta gagggaattt actatgtcat tatcggtttt agaccaatta gaagaaaaaa
     8281 ttaaacaagc tgttgaaact attcaattac ttcaattaga agttgaagaa ttaaaaggta
     8341 aaaacgatgc agcgaaacaa gaaaacgaca ccttgcgcag cgaatatgaa caattaaaag
     8401 tggaacaaca aaacttccaa gatcgtttac gttcactttt aggtcaaatc gacaacgttt
     8461 aattctattt tcagcacaaa cggctaaatt tttagccgtt ttttatttgt tacagctatg
     8521 gcaaaactct atttttacta ctcctcaatg aatgcaggca aatctactac tctgcttcaa
     8581 tcttcttata attaccaaga acgtggaatg aacactttag tttataccgc cgctattgat
     8641 gaccgtttcg gtgtggggaa agtcaactct cgtatcggta tttcacaaga agccaattta
     8701 tttaccgctg ataccaatct atttgcggaa attaaggcat tacactcaaa caaagcgtta
     8761 cactgtatct tgattgatga ggctcagttt ttaactaaaa cacaggttta tcaattaagt
     8821 gatgtggtcg ataaactcaa aattccggtg ctttgctacg ggctacgcac cgatttccaa
     8881 gctgaattat ttgaaggtag caaatatttg ttggcttggg cagatgagct ggaagaactc
     8941 aaaaccatct gtgattgtgg caaaaaagcc cattttgtcg ttcgattaaa tgaaaaaggc
     9001 gaagccatta aagacggtga acaaatacaa atcggcggca atgatagata tctctctgtt
     9061 tgccgttatc attacaaaca aaagttaggt aagctataag ctacaagaag cagcaagcgg
     9121 ttaaattttc gggaattttt gcaaattttc agcgaaattt aaccgcttgt ttgtgttatt
     9181 tacctctctt tactttcctg caaaccgaat ttgctcactc atttgtctca tcacactcga
     9241 agtctcggca aaaaactgtt ggtaagaggg gcaaaggtag ttgtggtttt cgctgtttgc
     9301 ttgggggacg atgcggtgtt tggggcagcc gccgtggcaa agtatgcgga atttgcagtt
     9361 taggcaggct tgcgagagtt ttgcctgttt attctgcccg aattggcgtt gggcggctga
     9421 tgagacgatc tctgccagct gctgttggtt gaggttgccg atgtggtaat cgggatagac
     9481 gaaatggtcg caactgtaca catcgccaca ggcttccacc accagcgagc tgccacaggt
     9541 cgggcggaat acacagttgt tggagggata gccaagccat tgcccgagca ggttatcaaa
     9601 ctcgatcaca aaaatctgcc cacggtcagg cagccattcg tgaaaaacat ccactaaaaa
     9661 ttgcccgtag ccttggggcg gaacggaaaa gggttgtaat tcccccttgt ggctttccac
     9721 caccggaatg aactgcatat aacggctacc gagggctttg agggcttgat aggtttctct
     9781 gccccgttgc cagttgcggt cgttcaccac cgtgagggtg ttaaattcca cgccaacctc
     9841 tttcaataaa tcgaccgcac ttttcacccg ttcaaaggtc ggtttaccgt tggtggaaat
     9901 gcggtagcgg tcgtgaatgt cgctcagtcc gtcaatggat aagcccacca gaaaatgatt
     9961 ctctttgaaa aagctcgccc actggcggtt tagggcaatg ccgttggttt ggattgcgtt
    10021 ggtgatctgc ttgccgtttg caaatttttg ttgatatttg accgcttgtt tgtagaaatc
    10081 taagcccagc agggtcggct cgcccccctg ccacacaaaa tccacccgtt ggctttggtt
    10141 ggcttcaatg taatgacgaa tgtagttttg cagcgtttca tcgttcataa actgcgattt
    10201 ttctggcgga atggtctgtt ccttgctcag ataaaaacag tactcgcact gaatattaca
    10261 gtgaaaactg ctgggttttg ccattaggtg gaagtaggtg gtggtcattg tatctctaaa
    10321 ttgtaggggc ggactttatg ttcgcccatt gtttacatta attttcgggc gggtataaaa
    10381 cccgcctcta caaacaatta tatctcatca ataatccgat acacccaatt ttccagtggg
    10441 tcgttgaggc gtttcatttc ctgtcgcatt tcttccaaca tctctttttt cacggcttgg
    10501 taggcttcgt cataaaagag gttgtgcatc tcttcggggt cttttctgac atcgtagagt
    10561 tcgcagcggt cggtggcgtt gaagaccaat ttgtaatcct tacgccgcca cattcgctgt
    10621 tcaaaataga caaaatgccc tgccagttgg cacaacaagc ctttgcggtc gttgttttgg
    10681 ctttgtctgg ttatcggcag aatactctcg ccttggaaag cggtcgggat cggttgattt
    10741 gccacatcat acacggtgga agtgagatcg tgcaaataaa cgaggttgtc atcgacttcg
    10801 ttcacccttg tagagtgcgg atctttaata atcagcggaa tgttgtaggt ggtttcaaac
    10861 ataaactcgc ctttttcgat catcttatgc gcccccatcg catcgccgtg gtcggcggta
    10921 gcaacgagga aggtattttc atagagattg ttctcttcca agaaacggaa cagctcgcca
    10981 atggcatcgt caatcagcgt gatgtagccc cagaatttag aaatcacctc tttccaacga
    11041 tcttcgctcg cctcccacat tccccacatt tgtgaaatgg tgcggaagtg gttcggtttg
    11101 ccctcaagcg gtttgaagaa actctcgtcc aataccactt ggcttgggtc atacattgaa
    11161 taatacggct ccggcactac acacggagtg tgcggccccc agaagttgat ccacgcaaag
    11221 aacggttttt tctcatcaag ggaggcttga atgtattttt tcgcctcgtc aatgataaac
    11281 cactctattg tctgctcgcg actgccggaa agcaaaccac agagttcctg cacacgcagg
    11341 tgtggattgt cgccaaaata ggctcgactg acttcgggtg cgtcatagcc cttttccgcc
    11401 agccattcac gataacggtt ggagtgtgtt ggcggctgat taaacacgag gtttttatac
    11461 acttggctgc ccgggtagcc atagccgtca aagttatgac cggcgatgcc ataatcttcg
    11521 ggaacggatt ttgtaccaac gtgccatttg ccgatcacaa aggagttata gccctccacg
    11581 ccggcaatat tagggttttg ttgtggaatt tcgcctgtgc cgcctttttc gccgtttttg
    11641 ataatcccgt ggctggacgg cattaagccg gtaaacagcg aggtgcgagc cggcccgcag
    11701 accgaagccg gcgtaaaggc gttgttaaac cgaatgccgt ctttcgccaa gcgatccaaa
    11761 ttcggggttt ttaccacctg atgcccgtaa gtgccgagca tatctttacg cacttgatct
    11821 aacaaaatat agatgatgtt attcataatg acctctttaa ggcttgttaa taaccgataa
    11881 attatcaagt ttcggagatc tgttcccctc tttagcaaag aggggatttt tgatctcgag
    11941 ccttttccgt tcttggtatt tttatactaa tgaggagaag gctcacattc atttaattca
    12001 ccgccttttt gcctttacat tttgcaaaaa acacgacaca aaccaccgct tgtagcacag
    12061 catacaccgc cagcaccatt gccggattgc cgtctggtga ggctaaaccg agcggagaga
    12121 ggaaagcgta tagcgtgaat aagcccaaca cgatagaagc cactgccagt ggggcatatt
    12181 cccagctggt taagtccaca ttggcgtggt tgattttgtt gtcttcgtat ggagtcgcac
    12241 gttttaggaa aattcctaaa atcagcatta acgccacatc gaacacgaac aagccagctt
    12301 gcacatacac gaagttgatt tttacatcaa acacccaaac gatgcagaag tagagaataa
    12361 cgtgtgcgag taaggcaatg cgtgcggctt tgcctgagac ggttttgttg aataagccga
    12421 tgacaaacag tgccacaatc ggaatgttca caaaaccggc gaaacgtttg gtcagcaaga
    12481 aaataccgtc tgtgccgaac atcagtaacg gcccaaagat catcgtaatc accgccatta
    12541 ccgcagagac ttttttcgca taacttatca gttccgcatc tgtgaactgt tttttgctga
    12601 tagacggcag taagtcttta cagtaaatgg ttgccgctga gtttaagaac gagttgaagg
    12661 tactcaaaat cgccccgaac agtgcggcaa taaagaagcc ttgtagcacg gttgggaaag
    12721 ttttattcac taattcaggg taagacacat caatcggttt caagccctca cctaaaatat
    12781 ggaaactgag taagcccggt aagtttaaga taagcggtag caataataag aacagtgccg
    12841 caattaagat ccctttttga ccggctttta agtctctcgc ccccaaggca cgttgcacaa
    12901 tggcttggtt ggtcgtccag tagaagaaat gcaccaccat aataccggtg aaaatggtcg
    12961 gccaaggcac tgcatcggtg gcactaccca ccgcattcca tttttcaacg tgagtagtgg
    13021 tgatgatttt caccccttct gccatactgc cattacctaa atagataagt gcaaacaccg
    13081 gcactaataa tgccccaatg actaacaaga ccgcattcca agtgtctgac accgccaccg
    13141 cttttaagcc accgaaaatg gcataaatcg ccccaacaat accaatcgca atcaccgtat
    13201 aggtaatcgc tgccccatag cttaagccga aggcagtttc aaggttgaag attttattga
    13261 aggcaatcgc accggtgtaa agtgcagtcg gaatgacgat gaaaagatag aacaccaaaa
    13321 acaagcccga cataatcaaa cgggtttggc ggtcgaaacg gttttcaaag aactccggaa
    13381 tggtggtata accgttgcgg atatatttcg gcaacagata aagtgccaag aagcaaagcg
    13441 gaattaccgc cggcacagtc cacgcaataa ttgagaaatt accggcataa gagttggcat
    13501 tcacgccgat aagttgctcg gtagaaaggg aggttaagac catcgaacag ccgataaccg
    13561 tagcactcaa gccacgccct gccaagaaat aacctttaga tgtcgaaaga tcgtcgtttc
    13621 tggtttttag ccaagagata tacccgacta atccagttac aaccagaaag gtaattattg
    13681 ttaataacat attcttcacc tcaatatgac tatataaatg atatatccca ttagagacgg
    13741 caatagcata aatcttattt ttaacgatag aatatgatgt ttgtcataat agatatgtga
    13801 tggtgatcac aactatgaat aatttatgac aatttaactg attttcttta attctcgcct
    13861 taatcgaatg gctgtttcgg tttcacaacc tgcaaattcg gcgatttcac ggttagtcca
    13921 gtgataattg ggataacgtt ggtgtaaata atgaatactg ttcattaccc gctcttgcgt
    13981 tttttgatag gaaaccattg ataaacgatg ctctgcgtct tgtaattctg tcgagagctg
    14041 ttttaacaga gagataatta aggcggaatt attcgaccaa aactcaatga aatttaaggg
    14101 ggtaatacgt atcaattctg ccggctgtaa cacccgagcc gagcaatggt agcgattatc
    14161 gccaaaaaag gttctaaacc caaaataatc gttggcttta tataccctca ccaagctctc
    14221 tttaccattt tcaagcatat ggtacagccc tattaatccg ctttttaaaa aataaaattc
    14281 tctggcgtga taaccctgag aataaatgac gactcctttt tctagatcag acattacact
    14341 taattggcaa gacatcaatt gttcggg
//
LOCUS       DANLVT010000059        13944 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.059, whole genome shotgun sequence.
ACCESSION   DANLVT010000059 DANLVT010000000
VERSION     DANLVT010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13944)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13944)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13944
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.059"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            387..2663
                     /gene="gshAB"
                     /locus_tag="PXC99_001490"
     CDS             387..2663
                     /gene="gshAB"
                     /locus_tag="PXC99_001490"
                     /EC_number="6.3.2.2"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate--cysteine ligase
                     GshA/glutathione synthetase GshB"
                     /protein_id="HDL5417941.1"
                     /translation="MKLQKLIRENHLALLFQQGNFGLEKESQRVDRNGNIVTTPHPAV
                     FGNRSYHPYIQTDFAESQLELITPPNAKLEDSFRWLSAIHEVVLRSLPEEEYIFPLSM
                     PAGLPPEEQIQEAQFDNPEDVQYRQHLSKNYGKYKQMVSGVHYNFQLSTEFVEKAFAL
                     QTEYSELKAFQNALYMKLANNFLRYQWILLYLLAATPTVESQYFYEKSPLARGQLVRS
                     LRSSPYGYVNSEKVVVNHDSLESYVESLEANVANGLLIAEKEFYSNVRLRGGKKAREL
                     LENGVKYAEFRLFDLNPFAPYGIELNDAKFIHYFLLGMLWLEETSGQKEVEIGKQKLY
                     QVALEDPRTETAFRAEGEAILNQLLAMLEELSAGQESLDLVREKLAQFADPSKTLNGR
                     LIAAIEEVGSYKALGAKLAQTYKAQAFERFYALSAFDNMELSTQALFFDLIQQGIEVE
                     VLDENDQFLALKFGDHLEYVKNGNMTSRDQYISPLIMENKVVTKKVLAKAGFNVPKSV
                     EFTNLEQAVAHYPLFEGKAVVIKPKSTNYGLGITIFQQAVKNREDFAKAVEIAFREDK
                     EVMVEDYLVGTEYRFFVLGDETLAVLLRVPANVVGDGIHSVKELVERKNDDPLRGDGS
                     RSPLKKIALGEIEQLQLKEQGLTVDSVPAKGQTVQLRANSNISTGGDSIDMTDQMHES
                     YRQIAVGIAQAMGAKVCGVDLIIPDLTKPAEPNLSSWGVIEANFNPMMMMHIFPYQGK
                     SRRLTKAVIKMLFPEIGN"
     gene            2985..3962
                     /gene="manX"
                     /locus_tag="PXC99_001491"
     CDS             2985..3962
                     /gene="manX"
                     /locus_tag="PXC99_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HDL5417942.1"
                     /translation="MSIAIIIATHGVAAEQLLKTTEMLIGEQEDVAYIDFVPGENAET
                     IMGKYQALVEGPLSHCDQVLFLVDMWGGSPFNAANRFQDGKSGMDVVAGVNIPMLVNT
                     CMARDDVESLEELVEVALEAGSTGIRSLNHQPEVAEVQTATPAQETAAVQQPEIVDDG
                     RRMTIALARIDDRLIHGQVATVWTKESKVNRIIVVNEGVAKDSVRTTMLKSVAPLGVT
                     AHVVDVPKMIRVYNNPEYADDRVMLLFTNPSDVLALIEGGVPLNSINVGGISHKEGKQ
                     MVSHSVAVDQNDIDAFKAIDAKGVELEVRKVSSDSRQYMMDLLKKHNLI"
     gene            3974..4774
                     /locus_tag="PXC99_001492"
     CDS             3974..4774
                     /locus_tag="PXC99_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005716709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HDL5417943.1"
                     /translation="MELSALQIVLLFLVACISGMGSILDEWQTHRPLIACTMIGLVLG
                     DVTTGVIVGGSLELLALGWMNIGAAVAPDAALASIVSTILVIVGRQDISTGIAIAIPL
                     AAAGQVLTYVVRAITVGFQHAADKSIEDGNLSRLDWLHRGALLLQAMRIAIPALIVAL
                     TAGTDAVQTMLNAIPEVVTTGLKIAGGFIAVVGYAMVINMMRAGHLMPFFFAGFVIAG
                     FTDFNLVALGVLGTVIAMVYIHMHPKYNKSQQVVVAAAPKNDLDNRLD"
     gene            4788..5624
                     /locus_tag="PXC99_001493"
     CDS             4788..5624
                     /locus_tag="PXC99_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005564636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IID"
                     /protein_id="HDL5417944.1"
                     /translation="MTTEIKKVTKSDLNAVVRRSNLFQGSWNFERMQALGFAYAMVPV
                     IKRLYPDPNGPGRKEAIKRHSEFFNTQPFVGAPILGVTIAMEEERANGKEIDNAAING
                     IKVGLMGPLAGVGDPIFWGTVRPVFAALGAGLALKGELLGPILFFALFNIVRLAARYY
                     GVVYGYKKGLDVVQDMSGGLLQKLTEGASILGLFIMGALVQKWTSINVPLVLSTIQKQ
                     DGTIEVTTVQSILDSLMPGLLPLLLTFACMWLLRNRVNAIWIILGFFVIGILGAATGA
                     LA"
     gene            5717..6202
                     /locus_tag="PXC99_001494"
     CDS             5717..6202
                     /locus_tag="PXC99_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF986 domain-containing protein"
                     /protein_id="HDL5417945.1"
                     /translation="MTNTILILFILLGLVFAIYDQVFMHKLKGTTLLEIRLKKQKTID
                     TWLLIGLIVLSISYGVQNQIQPFTLYLLATCIILSVYLAFFRSPRLLLKQHGFFFANV
                     FFNYDKIYQVNIAEGKADEKILVIDLHSGRRLLAYVENAEDLQPVVDFFGGYKKESEQ
                     K"
     gene            complement(6288..7079)
                     /gene="tpiA"
                     /locus_tag="PXC99_001495"
     CDS             complement(6288..7079)
                     /gene="tpiA"
                     /locus_tag="PXC99_001495"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HDL5417946.1"
                     /translation="MARRPLVMGNWKLNGDKAFTKTLIADLKAELHGVEGCDVAIAPP
                     VMYLAHAEASLAGCGCGCSDKGLIALGSQNVDVNVKGAFTGDISPEMLKEFGAKYIII
                     GHSERRTYHKESDEFIAQKFKVLKDAGLVPVLCIGESEAENEAGKTEEVCARQIDAVI
                     NAHGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAAKSQAVADQVIIQY
                     GGSVNDANAAELFTQPDIDGALVGGVSLKAPAFAVIVKAAAAAKA"
     gene            7239..8153
                     /locus_tag="PXC99_001496"
     CDS             7239..8153
                     /locus_tag="PXC99_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HDL5417947.1"
                     /translation="MKLNYLYSPPQAVGRLKAEYADFIVREELGYELAGEGEFVAVKI
                     RKTNASTLFVGEKLAKFVGISEREMSYAGLKDRHNRKIRVGSLAGNHFELLLRDVAES
                     EELIYRLQQLQAVGFPNYFTEQRFGRDGHNLTQALRWANGEISVKDRKKRSFYLSAAR
                     SEVFNLVVSQRINDCLTQKILENDYVQLAGSNSFFCVKSDEIAETQARLAQQDLLLTA
                     PLIGERSLELECNPAEKAIIEQHAQLVALMQKERMAAARRAMLCKPQNLEWQFEQEGL
                     RLKFFLDSGSYATALVRELILLTEESEA"
     gene            8324..9112
                     /gene="surE"
                     /locus_tag="PXC99_001497"
     CDS             8324..9112
                     /gene="surE"
                     /locus_tag="PXC99_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HDL5417948.1"
                     /translation="MRILISNDDGFHAVGIQTLAKALRDAGHIVTIIAPDRNRSAASS
                     CLTLVDPLRVHRFDEYNYAVIAGTPADCVHLALNGLFDGKFAEKFDLVVSGINHGANL
                     GDDVVYSGTVAAALEGRHLPLPSIAVSLVGRKHSSFLDGENHFGTAAQVVLDLLEKME
                     TQRFPSNHVLNVNVPNLPYSELKGTMITRLGERSPAAEIVKQKDPRNADVYWIGVTGE
                     PLDESFGTDFYALNRDCVSITPIQVDMTAHKTIATLKGIFNETV"
     gene            9099..9683
                     /locus_tag="PXC99_001498"
     CDS             9099..9683
                     /locus_tag="PXC99_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL5417949.1"
                     /translation="MKLFETIYDKTMQWSKHRFAAFWLSFVSFIEAIFFPIPPDVMLI
                     PMSMAKPQNAFKYAVYTTLASVAGGVIGYFIGLYATDWVQGVIANWGMQANFDKAKLW
                     FETWGVAVVFLAGFSPIPYKVFTICAGVMQMAFFPFVITAAISRFARFILVAKLSAWG
                     GKKYEQKIRRSIELIGWGTIVLAVVAYIIYTLMK"
     gene            9701..10201
                     /locus_tag="PXC99_001499"
     CDS             9701..10201
                     /locus_tag="PXC99_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HDL5417950.1"
                     /translation="MKKSLFVLSLISFALVGCSSNSGESTSAVETTEANATWQSADSI
                     QTAPMPASMNQPIATQPTYQQPTYSAPQPISAAPAPMPVSSGSDSSQVETVGNCQVVR
                     DANNAPIYSQITKGCYTESHYTVGKSDTLYLIGYLTGTNANQIAQLNGLNTGSPLKVG
                     QVLRVR"
     gene            10214..10414
                     /locus_tag="PXC99_001500"
     CDS             10214..10414
                     /locus_tag="PXC99_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417951.1"
                     /translation="MNRTLLAFAISCAFLTACSSPTQPQVEDPNMLPAGTLQPIEGSG
                     ASQDSYSWPSDIQSTSMPDSMK"
     gene            10433..11713
                     /locus_tag="PXC99_001501"
     CDS             10433..11713
                     /locus_tag="PXC99_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDL5417952.1"
                     /translation="MKKQFILLPLVSAVLAACSSNNPAPVVNASGNNELSPGVMQPVD
                     VSAGAINSSGGWQSDIQSAPMPSSMNTTPVQTMPQPVSVPQPVATVPQPITNPVITEQ
                     PPQPTTTTKIVKKTKTVEKKVDQNFEIPRDANNAPMYNQIQKGFYDGSTYTVRKGDTM
                     FLIAYIVGKDVKEIAALNNMSEPYQLSVGQKLKTGKSATETITVEEKVTVPVEPQITY
                     QQGANGTTYASGGNITGPVKAGTANADVTPVNNGIKATTATAPAVTASVGTVNATEDR
                     TASTIRAIDGTASGAVQSSNTVSAPASSIKWQWPTSGRVISGFSSAEGGNKGIDIAGN
                     KGQDVRAAAAGKVVYAGNALQGYGNLIIIKHTDDFLSAYAHNNTIEVDEQETVKAGQK
                     IATLGSTGTNTNKLHFEIRYKGKSVDPARYLPRK"
     gene            11954..12145
                     /locus_tag="PXC99_001502"
     CDS             11954..12145
                     /locus_tag="PXC99_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417953.1"
                     /translation="MDPTEPSHRIYILLSEDRFQAEVFSTKLSESSMLLEAVKGGYIS
                     KDGKVRLLKKAEGWKIYYE"
     gene            12138..12704
                     /locus_tag="PXC99_001503"
     CDS             12138..12704
                     /locus_tag="PXC99_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HDL5417954.1"
                     /translation="MSETKIRCDWCKSSEIYMKYHDEEWGKPEFDSLKLFEKICLEGQ
                     QAGLSWITVLKKREAYRQAFHQFNPEKIAKMGEEEIDLLMQNTSLIHHRAKLEAIIKN
                     AKAYITMQQNGEDFSRFIWSFVNYQPQINDVPTLEAVPAHTETSKAMSKALKKRGFVF
                     VGETTCYAFMQSMGLVNDHLNNCVFKHK"
     gene            complement(12751..12981)
                     /gene="acpP"
                     /locus_tag="PXC99_001504"
     CDS             complement(12751..12981)
                     /gene="acpP"
                     /locus_tag="PXC99_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDL5417955.1"
                     /translation="MSIEERVKKIIVDQLGAKAEDVKPEASFIEDLGADSLDTVELVM
                     ALEEEFDIEIPDEEAEKITTVQSAIDYVQNNQ"
     gene            complement(13168..13845)
                     /gene="rpe"
                     /locus_tag="PXC99_001505"
     CDS             complement(13168..13845)
                     /gene="rpe"
                     /locus_tag="PXC99_001505"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HDL5417956.1"
                     /translation="MSKNPYLIAPSILSADLARLGDDVAEVLKAGADLIHFDVMDNHY
                     VPNLTFGPAICKALRDYGIQCPIDVHLMVKPVERLIPDFAKAGADYITFHPEATEHID
                     RNLQLIRDLGCKSGLVFNPATPLSYLDYVMDKVDVVLLMSVNPGFGGQSFIPSTLDKL
                     KEVRRRIDESGYNIRLEVDGGVKINNIADIAAAGADMFVAGSAIFDQPDYQAVIAQMR
                     DELRKVG"
BASE COUNT         4142 a         2867 c         2909 g         4026 t
ORIGIN      
        1 tatagaatat ctcccttttc aggattacaa cggctgaaaa tttcattatg aatttctttt
       61 gttacatagc taatttttga taaatctaat ccatctttct ttatattttt agctgtaata
      121 taaagaaaat cactcttatc gatatttggg ggagaatgat gagttccatc tgtaattttt
      181 aggcatatat cccccaacct cacccacacc caactctcag gaatctcaaa aggtggttca
      241 atggtataag gggctttatc cgaagcagta tttctgttat aaccaaatca tctacttcat
      301 tccaataaac taaaacccac tatttcacta agtctttcat ttgtgttatt gtgccgatac
      361 atttttttga ctacaaagga tagatgatga aactacaaaa acttatccga gaaaatcatt
      421 tagcattgct gtttcaacaa gggaattttg ggcttgagaa agagagccaa cgggttgatc
      481 gcaacggcaa tatcgttact actccccacc ctgccgtatt cggtaatcgc tcttaccacc
      541 cttatattca aaccgatttt gccgaaagtc agctagagtt aatcactccc ccgaatgcta
      601 aattagaaga cagttttcgt tggctctctg ctattcacga agtggtattg cgttcgttgc
      661 cagaggagga atatatcttc cctctcagta tgccggcagg cttgccgccg gaagagcaaa
      721 ttcaagaagc acaatttgac aaccctgaag atgtgcaata tcgccaacac ctttccaaaa
      781 actatgggaa atataagcaa atggtaagcg gcgtgcatta taattttcaa ctttcaacgg
      841 aatttgtcga aaaagccttt gctttacaaa cggaatatag cgagctgaaa gccttccaaa
      901 acgcacttta tatgaagtta gctaataact ttttgcgtta tcaatggatt ttgctctatt
      961 tattggctgc cacgcctacg gtggaatcgc aatattttta tgaaaaatca ccgcttgcga
     1021 gagggcaact tgtccgcagc ttgcgttcaa gcccttatgg ttatgtgaat tcggaaaaag
     1081 tggtggttaa tcacgacagc ttagaaagct atgttgaaag ccttgaagcc aatgttgcca
     1141 acggattatt aattgccgaa aaagaattct attccaatgt gcgtttacga gggggcaaaa
     1201 aagcccgtga gctattggaa aacggtgtga aatacgccga attccgttta tttgatttaa
     1261 accctttcgc cccttacggc attgagctga atgatgccaa atttatccat tatttcttac
     1321 tcggtatgct ttggctggag gaaacaagcg gtcaaaaaga ggtcgaaatc ggcaaacaga
     1381 aactttacca agtcgcactt gaagatccaa gaacagaaac cgctttccgt gccgaaggtg
     1441 aagccatttt aaatcaactt ttagcgatgc ttgaagaatt atctgccggt caggaaagcc
     1501 tagatttggt gcgggaaaaa ttagctcaat ttgctgatcc aagcaaaacc ctgaacggac
     1561 gtttaattgc cgcaatagag gaagtcggca gttataaagc attgggggct aaattggctc
     1621 aaacctataa ggcacaagcc tttgagcgtt tttatgcgtt atcggcattt gataatatgg
     1681 aactttccac tcaagccctg ttttttgatt tgatccaaca agggattgag gtggaagtac
     1741 tggacgaaaa cgatcaattc ctcgccctaa aatttggcga tcatttggaa tatgtgaaaa
     1801 acggcaatat gaccagccga gatcaataca tttcaccgct gattatggaa aacaaagtgg
     1861 tgacgaaaaa agtattggca aaagccggct ttaacgtgcc gaaaagcgtt gaatttacca
     1921 accttgaaca ggctgtggca cattatccgc tatttgaagg caaagcggtg gtgattaagc
     1981 cgaaatcgac taactatggt ttagggatta ccatcttcca acaagcggtc aaaaatcgag
     2041 aagattttgc aaaagcggtt gaaattgcgt tccgtgaaga caaagaggtg atggtggaag
     2101 actatttagt cggtactgaa taccgcttct ttgtactggg cgatgaaacc cttgcggtgt
     2161 tactgcgtgt accggcgaat gtagtgggag atggcattca cagtgtaaaa gagctggtgg
     2221 agcgtaaaaa tgacgatccg ctacgtggcg atggctctcg tagcccgttg aaaaaaattg
     2281 ccttaggtga aattgagcag ttacaactta aagagcaagg cttaaccgta gattccgtac
     2341 cggcgaaagg tcaaacagtt caactgcgtg ccaattccaa catcagcacc ggcggcgatt
     2401 cgattgatat gaccgaccaa atgcacgaaa gctatagaca aattgcagtg ggaattgctc
     2461 aggcaatggg ggctaaagtg tgtggggtgg atttgatcat tcctgatctc accaaacctg
     2521 ccgagccaaa tttaagctct tggggcgtca ttgaggcaaa cttcaaccca atgatgatga
     2581 tgcacatttt cccttaccaa ggcaaatccc gccgtttaac caaagcggta atcaaaatgc
     2641 tgtttcctga gataggcaat taaattttct ctctatacct cttttaagga gaatttactc
     2701 aagaattctc cttaatttat ttctaaagtt ttactccaat taaatttcac tttgtgcaaa
     2761 acactccaaa agaagaattt ttttgtataa gtaaaaacga tcgaaaatat ctccgttaac
     2821 aaaatgttat aaagaaaaga catttagccc aatttatagc caaaaaagct tattgtctgt
     2881 gatatagatc acacttttgt aattaataca ttgtgtgaaa taattatcat attaaaatct
     2941 cgccccagta aataaacaac ttaaaaaacc gcaaggagta acaaatgagc attgctatta
     3001 tcatagcaac ccatggtgtt gctgcagagc aacttctcaa aacaactgag atgttgattg
     3061 gtgaacaaga agatgttgct tacattgact ttgttcccgg cgaaaatgca gaaacgatta
     3121 tgggcaaata tcaagcattg gttgaaggtc cactatcaca ctgtgatcaa gtgctgtttt
     3181 tggtggatat gtggggagga agcccattca acgccgcaaa ccgattccaa gatggaaaat
     3241 cgggtatgga tgttgttgcg ggtgtgaata ttcctatgtt agtgaacacc tgtatggctc
     3301 gtgatgatgt ggagtcgttg gaagaattgg tggaagtcgc attagaagcc ggctcaaccg
     3361 ggattcgttc acttaatcac caacctgaag tggctgaggt gcaaaccgct actcctgcac
     3421 aagaaactgc agctgttcaa cagcctgaaa ttgttgatga cggacgtcgt atgaccattg
     3481 cccttgcccg tattgatgac cgcttgattc acggtcaagt tgcgacggtt tggacaaaag
     3541 aaagtaaagt caatcgcatt attgtggtaa acgaaggtgt agcaaaagat agtgtacgaa
     3601 ctactatgct aaaaagtgtt gctcctcttg gcgtaacggc tcacgttgtt gatgtaccta
     3661 aaatgattcg tgtctataac aaccctgaat atgccgatga tcgtgtaatg ttactcttta
     3721 ccaacccaag tgatgtctta gccttaattg aaggcggtgt accactcaat agcattaacg
     3781 tgggcggtat ttcgcataaa gaagggaaac aaatggttag ccattctgtg gcggttgatc
     3841 aaaatgatat tgatgccttc aaagcaattg atgcgaaagg cgttgaatta gaagtacgca
     3901 aagtctcaag cgatagccgt cagtatatga tggatttatt gaaaaaacat aacttaatct
     3961 aaaggaaatt actatggaac tttcagcatt acaaattgtg cttttattcc tcgttgcctg
     4021 tatctcaggt atgggctcaa ttcttgatga atggcaaacc caccgtccgt taattgcctg
     4081 tacgatgata ggcttagtgc ttggtgatgt gactaccggc gttattgttg gtggctcatt
     4141 agagttatta gctttaggtt ggatgaacat cggtgccgct gttgcaccag atgcggcatt
     4201 agcctctatt gtctcaacca ttttagtcat tgtaggtcgt caagatattt caactggtat
     4261 cgccatcgct attccgcttg cagctgccgg tcaagtatta acctatgttg tgcgtgcaat
     4321 caccgtaggt ttccaacacg cagcagataa atcaattgaa gacggtaact taagccgttt
     4381 agactggtta catcgtggtg ctttattgct tcaagcaatg cgtattgcca ttccggcatt
     4441 aattgtggca ttaacagcag gtacagatgc ggttcaaaca atgttaaatg ccattcctga
     4501 agtggttaca accgggctga aaattgccgg tggcttcatc gccgtggtgg gttatgcgat
     4561 ggtgatcaat atgatgcgtg caggtcattt aatgccgttc ttcttcgcag gctttgtaat
     4621 tgcaggcttt accgatttca atcttgttgc ccttggggta ttaggtacgg ttattgcaat
     4681 ggtttatatc catatgcacc ctaaatataa caaaagccaa caggtagtgg tggcagctgc
     4741 accaaaaaat gatttagaca accgtttaga ctaagagggc atttaaaatg acaactgaaa
     4801 tcaaaaaagt aacaaaaagc gatttgaatg ccgttgtacg tcgttcaaac ttattccaag
     4861 gttcgtggaa ctttgagcgt atgcaggctc ttggttttgc gtatgcgatg gtaccggtta
     4921 tcaaacgttt atatccggat ccaaatggcc cgggtcgcaa agaagcaatt aaacgccatt
     4981 ctgagttctt taacacccag ccattcgtcg gtgcaccgat tttaggggta accattgcta
     5041 tggaagaaga acgtgccaac ggtaaagaaa tcgacaatgc cgcaattaac ggtattaaag
     5101 ttggtttaat gggaccatta gccggtgtgg gtgacccaat tttctgggga actgttcgcc
     5161 ctgtatttgc cgcattagga gcaggcttag ccttaaaagg tgagctttta ggcccaatcc
     5221 tgtttttcgc cttatttaac atagtgcgtt tagccgcacg ctattatggc gtagtgtatg
     5281 gctataaaaa agggttagat gttgtacaag atatgagcgg cggtttattg caaaaattaa
     5341 ccgaaggtgc ttcaatctta ggtctgttta ttatgggggc attggtacaa aaatggacga
     5401 gcattaacgt tccgcttgtg ctttcaacca ttcaaaaaca agacggtacc atcgaagtta
     5461 ccacagtgca aagcattctc gacagcttaa tgccgggcct actcccatta ttattaacct
     5521 ttgcttgtat gtggttactt cgtaatcgag taaatgctat ctggattatc ctcggtttct
     5581 ttgttatcgg tatcctcggc gctgcaaccg gtgcattagc ttaattgcaa aattttctgt
     5641 gaaaacgacc gcttgaactt gaacattcaa gcggtttttt atacgcttta gcccaaataa
     5701 attcacttgc ttaattatga ccaataccat ccttattctc tttattttac ttggcttagt
     5761 attcgccatt tatgaccaag tttttatgca caaactcaaa ggcacaacct tactggaaat
     5821 ccgtttaaaa aagcaaaaaa caattgatac ttggttattg attggtttaa tcgtcttgtc
     5881 aattagctat ggcgtacaaa atcaaatcca gccttttaca ctttacctgc tggcgacttg
     5941 cattattctg tcggtctatc tcgccttttt ccgttcccct cgcttgttgt taaaacagca
     6001 cggttttttc tttgcgaatg tcttttttaa ttacgacaag atttatcaag tcaatattgc
     6061 agaaggaaaa gcagacgaaa aaattttggt aattgattta catagcggaa gaaggctgct
     6121 tgcctatgtt gaaaatgcgg aagatcttca accggtagtg gatttttttg gcggttataa
     6181 aaaggaaagt gagcagaaat agtttgcgaa caaaacacaa gcggtcattt ttccctgaaa
     6241 ttttgcaaaa aactgaggaa aaatgaccgc ttgtaaaatc ggttaaatta ggctttagca
     6301 gccgctgccg ctttaacgat caccgcaaaa gcaggcgctt taagtgaaac accgcctact
     6361 aatgcaccgt caatatccgg ttgagtgaat aactctgctg cattggcatc gtttacagag
     6421 ccaccgtatt gaatgatcac ttggtcagcc actgcttgcg atttagctgc aatatggtca
     6481 cgaataaatt tatgcactgc ttgtgcttgt gccggagtcg ctgatttgcc ggtaccgatt
     6541 gcccaaattg gttcgtaagc aataactgca ccgttgaatg cttccacacc gtgcgcgttg
     6601 atgaccgcat caatttgtct tgcacacact tcttcagttt tacctgcttc attttcggct
     6661 tcagattcac cgatacataa tacaggcact aagccggcat cttttaatac tttgaatttt
     6721 tgagcaataa attcatcgct ttctttgtgg taagtacggc gttctgaatg cccgataata
     6781 atatattttg ccccaaactc ttttaacatt tcaggtgaaa tatcaccggt gaatgcccct
     6841 tttacgttca catcaacgtt ttgtgaacca agtgcgatta agcctttatc actgcaacca
     6901 cagccacaac cggcaagtga tgcttcagcg tgtgccaaat acatcaccgg tggagcgatt
     6961 gctacatcac agccttcaac gccatgtaat tctgctttta aatctgcaat taaggtttta
     7021 gtaaacgctt tatcaccgtt taatttccag ttacccatta caagtggacg acgtgccatt
     7081 ttgtttctcc tatatgaagt tgaacttaaa tataaacgtt gcaaactata ccaaatttta
     7141 atgtcgtttt gttgttttta ttttgctttt tctgatctag atcgaaaggt ttaacgtata
     7201 atgccgaaat cttatttttt atgttattcg agaagtgaat gaaactgaat tatttatact
     7261 ctcctcctca agctgttggg cgactaaaag ccgaatatgc agactttatt gtgcgtgaag
     7321 aactgggcta cgaactagcc ggcgaagggg aatttgtggc ggttaaaatc cgcaaaacca
     7381 acgccagcac gctgtttgtg ggggaaaagt tagccaaatt tgtcggtatt tccgagcgtg
     7441 aaatgagtta tgcaggctta aaggaccgcc acaaccgcaa aattcgtgtt ggttcgctcg
     7501 ccggcaatca ttttgaatta ttgctacgtg atgtagcaga aagcgaagag ttgatttacc
     7561 gtttgcaaca gttgcaagcg gtcggatttc ccaattattt taccgaacaa cgtttcgggc
     7621 gagacggaca taacctgact caagccttgc gttgggcaaa cggggaaatt agcgtgaaag
     7681 atcgcaaaaa acgcagtttc tacctttccg ctgcccgctc ggaagtgttt aatttagtgg
     7741 tttcacagcg gattaatgac tgcttaaccc aaaaaatctt ggagaatgat tacgttcaac
     7801 ttgccggctc taacagcttt ttctgcgtga aatcggacga aattgctgaa actcaagccc
     7861 gtttagcaca gcaagatcta cttctcaccg ctccgctgat aggcgaaaga tcgcttgaat
     7921 tagaatgcaa tcctgctgaa aaagccatca tagagcaaca cgctcaattg gttgccttaa
     7981 tgcaaaaaga gcgtatggca gccgctcggc gagcaatgct ttgtaagcca caaaatctgg
     8041 aatggcaatt tgaacaagaa gggctacggt taaaattctt tttagattca ggcagttatg
     8101 ccactgcact ggtgcgagag ttaattctgc ttaccgaaga gagcgaagct tagtccataa
     8161 cacataacaa gcggtaagat tttaatcatt ttttgcaatt tgcaaaactt taacaaaatc
     8221 ttaccgcttt ttgcactttt agactaaaaa aactgtcgaa aaattgttag aattgcgatc
     8281 tttgtattta gagtctatca agatgtaaga tctaaaggaa attatgcgaa ttttaattag
     8341 taatgacgat ggttttcacg ctgtcggcat tcaaacttta gccaaagcct tgcgagatgc
     8401 aggccatatc gtcaccatta ttgcaccgga tcgtaaccgc agtgcagctt caagctgcct
     8461 aaccttagta gatccacttc gggtgcatcg ttttgatgaa tataattatg cggtgatcgc
     8521 cggcacacct gccgattgcg tgcatttagc cttaaacggc ttgtttgacg gcaaatttgc
     8581 agaaaaattt gatttggtgg tctccggcat taatcacggg gcaaatttag gcgatgatgt
     8641 ggtttactcc ggtacggtag cggcagcatt ggaaggccgc cacttgccat taccaagtat
     8701 tgcagtatca ctggttgggc gtaaacactc ttcgttttta gacggtgaaa atcattttgg
     8761 aacggcagca caggtagtgt tagatttatt ggaaaaaatg gaaacgcaac gttttccatc
     8821 aaaccacgtt ctcaatgtta atgtgccgaa tttaccttat tcagagctaa aaggcacaat
     8881 gatcacccgc ttaggtgaac gttcacccgc tgcggaaatt gtgaagcaaa aagatcctcg
     8941 taatgctgat gtctattgga ttggtgtaac aggtgaacca ctggatgaaa gttttggtac
     9001 tgatttttat gcattaaacc gagattgcgt ttctatcaca ccaattcaag tggatatgac
     9061 cgctcataaa acgatagcaa ccttaaaagg catttttaat gaaactgttt gaaacaattt
     9121 atgacaaaac aatgcagtgg tctaagcacc gcttcgctgc cttttggttg agttttgtca
     9181 gttttatcga ggcgatcttt ttcccgattc cgccggatgt gatgttgatt ccgatgtcga
     9241 tggcaaaacc gcaaaatgcg tttaaatatg cagtttacac tacccttgct tcggttgccg
     9301 gtggtgttat tggttatttt attggcttat atgctaccga ttgggtgcaa ggcgtcatcg
     9361 caaattgggg aatgcaagca aactttgata aagcaaaatt gtggtttgaa acttggggtg
     9421 tcgcggtagt atttttagcc ggtttttcgc cgattcccta taaggtattt accatctgtg
     9481 ccggtgtaat gcagatggcg ttcttcccgt ttgtgattac tgctgcgatt tctcgctttg
     9541 cccgttttat tttggtagca aaactctctg cttggggtgg caaaaaatat gaacaaaaaa
     9601 ttcgccgctc aattgaatta attggttggg gaacaatcgt tttagccgtt gttgcctata
     9661 taatttatac attaatgaaa taaattttaa ggatataaaa atgaaaaaat cactttttgt
     9721 tttatctctg atttcttttg ctttagtggg ttgttcaagc aattcgggtg aatccacttc
     9781 tgcggtagaa acaacagaag caaatgcaac ttggcaatca gcagatagca ttcaaactgc
     9841 accaatgcct gcctcgatga atcaacctat tgccactcag ccaacctatc agcagccgac
     9901 ttactctgca ccacaaccaa tttcggcagc accagcacca atgcctgttt caagtggtag
     9961 tgatagctct caagttgaaa cagtagggaa ctgccaagtg gtgcgtgatg cgaataatgc
    10021 tcctatctat tcacaaatta ccaaaggctg ctacacagaa agtcactata cggtaggtaa
    10081 aagtgatacg ctttatttaa tcggttatct aaccggcacc aatgccaatc aaattgcgca
    10141 gctaaatggt ttaaataccg gctctccact gaaagtcggg caagtcttac gtgttcgtta
    10201 ataggcagag aaaatgaaca gaaccctttt agcatttgca atttcttgtg catttttgac
    10261 cgcttgtagc tcgcctactc agccacaagt tgaagatcca aatatgttac ctgcaggcac
    10321 attacaaccg attgaaggct caggcgcaag ccaagacagt tacagttggc cgtctgatat
    10381 tcaatcaacg tcaatgcctg acagtatgaa ataattttag gacaatcatt taatgaaaaa
    10441 acaatttatt cttctccctt tagtctctgc tgttttggca gcctgttctt caaacaatcc
    10501 agcaccggtg gtgaatgctt ccggtaataa cgaattaagc ccgggcgtga tgcagcctgt
    10561 tgatgtgagt gcaggtgcaa ttaattcaag cggtggctgg cagtctgata ttcaatctgc
    10621 accaatgcca agctcgatga ataccactcc ggtgcaaaca atgccccagc cggtttcagt
    10681 gccacaacct gtggcgactg taccgcagcc aattaccaat ccggtgatta ccgaacaacc
    10741 accacagccg acaaccacga ccaaaatcgt gaaaaaaacg aaaacggtcg agaaaaaagt
    10801 ggatcaaaat tttgagatcc cgcgtgatgc caacaatgcc ccaatgtaca accaaattca
    10861 aaaagggttc tacgatggct ctacctatac cgtacgcaaa ggcgacacaa tgtttttgat
    10921 tgcctatatt gtgggtaaag atgtaaaaga aatcgccgct cttaataata tgagcgaacc
    10981 ttaccaatta agcgtagggc aaaaactcaa aaccggcaaa tctgcaacgg aaactattac
    11041 cgtggaagaa aaagtcaccg taccggttga accacaaatt acctaccaac aaggtgcaaa
    11101 cggcacaacc tatgcttctg gcggtaatat tactgggccg gtaaaagcag gcacagccaa
    11161 cgctgatgtc acgccggtta ataacggtat taaagcaaca actgcaactg ctccggcagt
    11221 aactgcttct gtcggtacag taaatgcaac agaggaccgt accgcctcca ccattcgtgc
    11281 tatagatggc acagcaagtg gtgccgtaca aagtagtaat actgtttctg caccagcttc
    11341 atcaattaaa tggcaatggc caaccagcgg gcgtgtaatt tcaggcttct cctcagcaga
    11401 aggaggtaat aaaggcattg atattgccgg caataaagga caagatgtac gtgctgccgc
    11461 cgcaggtaaa gtggtatatg ccggtaatgc cttgcagggt tacggtaact taatcatcat
    11521 caaacatacc gatgatttct taagtgctta tgcacacaac aatactattg aagttgatga
    11581 gcaagaaacg gtgaaagccg gtcagaaaat cgcgacttta ggtagtacag gaaccaatac
    11641 gaataaatta cattttgaaa ttcgttacaa aggaaaatct gtcgatccgg ctcgttattt
    11701 accaagaaaa taagagtaac tttttagcat aatccgaccg cttgtgtact acaagcggtc
    11761 aatttttagg aaaattatgc aaatgaaaaa atatatcgca cacatgataa gttcgttact
    11821 gctgatagtt tgttcggact accgagcaac accaactagc ccaagcgatg cttacacttg
    11881 ctctccttct tttcgctact ctttcttaaa aaaaacgtgc atacctttat tcagtatagc
    11941 cgacattcaa ttattggatc caaccgagcc ttcacatcgc atttatattt tgttatctga
    12001 agatcgattt caagccgaag tcttctcaac gaagctctct gaatcttcta tgttattgga
    12061 ggcggttaaa ggaggctata tttcaaaaga cggaaaagtt cgtttactca aaaaagctga
    12121 aggttggaaa atttactatg agtgagacta aaatacgttg tgattggtgt aaaagcagtg
    12181 aaatttatat gaaatatcac gacgaagaat ggggaaaacc ggagtttgac agcctcaaac
    12241 tgtttgagaa aatctgcctt gaagggcaac aagccggact ttcttggatt acggtgttga
    12301 aaaaacggga agcctaccgc caagcattcc atcagtttaa tcctgaaaaa attgccaaaa
    12361 tgggtgaaga agaaattgat ttgttaatgc aaaacactag cttaatccac caccgagcaa
    12421 agttagaagc cattataaaa aatgcgaaag cttatatcac aatgcagcaa aatggcgaag
    12481 acttcagtcg gtttatttgg tcttttgtga attatcagcc gcaaattaat gatgtaccaa
    12541 cacttgaagc tgttcctgct catacagaaa cctcaaaagc aatgtcaaaa gcgttgaaaa
    12601 aacgtgggtt tgtgtttgta ggcgagacta cttgctatgc ttttatgcag tcaatggggc
    12661 tggttaatga ccatttgaat aattgcgtgt tcaaacataa ataaacacaa aaaattaggc
    12721 gaccatttgg tcgcctaaca ttaattcaga ttattgattg ttttgaacgt aatcaattgc
    12781 tgattgaact gtagtaattt tttcagcttc ttcatctgga atttcgatat cgaattcttc
    12841 ttctaaagcc attactaatt caacagtgtc taaagaatct gcacctaaat cttcaatgaa
    12901 tgaagcttct ggttttacat cttctgcttt cgcgccaagt tgatcaacaa tgattttttt
    12961 tacgcgttct tcaatgctca ttttgttttt cctatagtga atatcgcata agtgcgagag
    13021 ttaaatagtg taatcgaaat aagtttaaat acaacctttt ataaaaaggt caaaccagac
    13081 tattcctata caccagaata tatctgtttt tccattctat cattatgttt gtgtttaatc
    13141 tatagagata aatcaaattt catttgatta ccctactttc cgtaattcat ctcgcatttg
    13201 tgcaatcact gcttgataat ctggctggtc aaaaatcgca gaacctgcca caaacatatc
    13261 tgctcctgcg gctgcaatgt cggcaatgtt atttattttc acaccaccat caacctctaa
    13321 gcgaatgtta taaccgctct catcaatacg acgacggact tctttcaatt tatctaaggt
    13381 ggacggaata aatgattgtc cgccaaagcc cggattcaca gacatcaata aaaccacgtc
    13441 aactttatcc atcacataat ctaaatagct caatggcgtt gccgggttaa acaccaagcc
    13501 tgatttacaa cctaaatcac ggataagctg taaatttcga tctatatgtt ccgttgcttc
    13561 agggtggaat gtaatataat ccgctccggc tttggcaaaa tccggaatca aacgctcaac
    13621 cggttttacc attaaatgca catcaatcgg gcattgaatg ccgtaatcac gtaaggcttt
    13681 gcagatcgcc ggcccgaagg tcaaattcgg cacgtagtgg ttgtccatta catcaaagtg
    13741 aattaagtct gcaccggctt ttaacacctc tgccacatca tcacccaagc gagctaaatc
    13801 ggcagataaa atagacggtg caattaaata aggattctta ctcatatttc ctcactatca
    13861 aaaaataaat ctacgttaga ttaccataat tttaacagcg aaaagagtct ctcttcctaa
    13921 aaatccgttt ttttacaaaa cacc
//
LOCUS       DANLVT010000060        13819 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.060, whole genome shotgun sequence.
ACCESSION   DANLVT010000060 DANLVT010000000
VERSION     DANLVT010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13819)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13819)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13819
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.060"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..829
                     /locus_tag="PXC99_001506"
     CDS             <1..829
                     /locus_tag="PXC99_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL5417957.1"
                     /translation="NYKAVSAGNLTNYTLDVKTTSAGTLLKELFETKLPVFSAPKNPN
                     FLRHLITLFEDKNFISLDFFAGSSSFPHAILESNRIDKGNRKFIAVQYPEEIDIKSKN
                     GKVAKQFCQRKNLPLYITEISKERIRRAGKQILQNNPENRPLDVGFKVFKLTESHFKQ
                     WQSPTSENLADQLEMFIDPVSEKADTQAVLYELLLRLGLKLTAKVRLENKVFWVEENG
                     LIFALLLNAADEEIIQTVIAQQPKKVIALDRLFNGNDARKKNTELQMQDAGITFFVI"
     gene            839..3475
                     /locus_tag="PXC99_001507"
     CDS             839..3475
                     /locus_tag="PXC99_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL5417958.1"
                     /translation="MELQFETLEYQLQAVNATVNLFVGQPNAATEFSLKAQNDMRFVP
                     NLGLQISDEQLQQNLANLQNRQKIDRTLLVEQGKNFTVEMETGTGKTYVYLRTIFELN
                     RQYGWQKFVIVVPSVAIREGVLHTLETTKSHFNTVFDNPSVNQKFEYKSNQTSRLKSF
                     ASANHIEILVMNIDAFTKESNVINTVNESGDAPIFYIQQANPIVIIDEPQNMETEIRR
                     NAIESLSPLFTLRYSATHKNAYNPIFSLNPVQAYEMGLVKQIEVDSVLAENEVNGAYL
                     SLKEIKTGAKSWSAKIEILFNDKKAMKKKVISVKPNQDLYELSNQNEMYRSGFILSGM
                     DTDSQMVSFSNGTQIFQGAEHSQLKEDVQKMQIRRTIGEHLQKEKKLRPLGIKVLSLF
                     FIDKVDNYRPSAQSPTGGKFAKWFEEIYLELAKEEPQGVHNGYFSQDKKGVAKDTNGT
                     TQADNETYQLIMRDKEKLLSLENPLRFIFSHSALKEGWDNPNVFQICTLNDTASEMKK
                     RQEIGRGLRLPVNQQGLRIYDRHLNTLTIIANESYEQFAATLQREIEEDCGVQFAKSN
                     VKKREDKKAVRYRKDFSLHPEFAAIWERIKHQTTYRVDFSNAELIESAVEKIRKMPDI
                     EATKIKHSKVKLEMNETGISTNYRSSNETAVNTQWAIPDLLSEIQKKTGLTRATLCKI
                     LQKSDRLQEVFRNPQRFIDLIAEKINLALQQIMTDGVEYHKIAGKTYEMTLFGDFDFY
                     LNQYTFEVQDKTKTIYEDYIALDSQTENIFARHCESSEQVEFYFKLPKRFKIPTPLGS
                     YNPDWAVVFKGENKIYLVAETKNTGKGIQAGVDEEKLDESERMKIDYARKHFKGLQRD
                     YKDLDYRVVQKVEELSAEYCKI"
     gene            3607..6039
                     /gene="gyrB"
                     /locus_tag="PXC99_001508"
     CDS             3607..6039
                     /gene="gyrB"
                     /locus_tag="PXC99_001508"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HDL5417959.1"
                     /translation="MSEQTQATSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHM
                     VFEVVDNAIDEALAGHCKDIIVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTV
                     LHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLA
                     IIGNTEKTGTSVRFWPSLDIFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDERDGKE
                     EHFKYEGGIKAYVEYLNEGKTHIHNTPFYLTTEKDGIGVEISLQWNDSYNENVYCFTN
                     NIPQRDGGTHLAGFRGALTRALKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKV
                     PDPKFSSQTKDKLVSSEVRGAVESSMNEALSDYLAENPDDAKNIVTKIIDAARAREAA
                     RKAREMTRRKGALDLGGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAI
                     LPLKGKILNVEKARFDKMLSSQEVATLITALGTGIGRDDYNLEKLRYHKIIIMTDADV
                     DGAHIRTLLLTFFYRQMPELIENGYIYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDI
                     ALEGAGLYVSEDAPALSGVALENLIAQYNGVQKLIERLSRRYPTLLLNELIYSKPLSV
                     EFAKNQANMTAWSEQFVATLMAKEVGGSFYRINTLFNEERQIYEPEIIVTTHGMDSTY
                     RLDYNFINGNEYARIVALGNELNDLLSDSAYVVRGERRQEISSFAEALDWLVKESRKG
                     LTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAIAADKLFSTLMGDEVEPRRDF
                     IETNALYAQLDI"
     gene            complement(6092..7054)
                     /gene="cmoB"
                     /locus_tag="PXC99_001509"
     CDS             complement(6092..7054)
                     /gene="cmoB"
                     /locus_tag="PXC99_001509"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005707797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HDL5417960.1"
                     /translation="MIDFRPFYQQIATTDLSAWLETLPLQLKQWEKTPHADYAKWAKV
                     ADFLPNSTACINLKDKVESISSKPLSEGEVKQITHHLKQLMPWRKGPYHLHGIHIDTE
                     WRSDFKWDRVLPHLAPLKDRTILDVGCGSGYHMWRMVGEGAKMVVGIDPTELFLCQFE
                     AVRKLLGNDRRANLIPLGIEQMQPLAAFDTVFSMGVLYHRKSPLDHLSQLKAQLVRGG
                     ELVLETLVIDGDINDVLVPADRYAKMKNIYFIPSVAALINWLEKVGFKNVRCVDEAIT
                     TLEEQRKTDWLENESLVDFLDPNDHSKTIEGYPAPKRAVILANA"
     gene            complement(7151..8914)
                     /locus_tag="PXC99_001510"
     CDS             complement(7151..8914)
                     /locus_tag="PXC99_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     accessory protein YcaO"
                     /protein_id="HDL5417961.1"
                     /translation="MSEQTFITGKDAALEDSIATFQHKLKTLGFNIEEASWLNPVPNV
                     WSVHIRDADCPQCFSNGKGASKKAALASALGEYFERLSTNYFWADFYLGQEIANSEFV
                     HYPTEKWFPIDDEAIPPMEMMDEFLWEYFDPNGEITPELLVDLQSGNYDRGIVTLPYV
                     RQSDNETVYIPQSIIGNLFVSNGMSAGNTKNEARVQGLSEVFERFVKNRIITEAISLP
                     EIPQSVIDGYPTIKASIEKLEQEDFPILCYDASLGGEFPVICVILLNPNNGTCFASFG
                     AHPNFQVAFERTVTELLQGRSLKDLDVFAPPSFNNEDVADHANLETHFIDSSGLISWD
                     LFKRDADYPFVHWDFSGTTEQEFNNMMAIFNKHNQPVYIMDYEHLGVYACRILAPGMS
                     NIYPSDDLVYANNNMGMDWREILLDLPHFHHDAETYQELLDELDEQSIDDLTRVREFI
                     GVVAEKGSAMQTLRIGELKSMLHLALGNLEQASDWANWTANMNASVFSAERNNYYRCL
                     IQSIELFLDEERDSEQYRMVFEKMYGKQAVEAAWGAIQGGNPFHGLTASDESLENMTA
                     HQKLLNAYRKVQKAKVNPIAR"
     gene            9178..11466
                     /locus_tag="PXC99_001511"
     CDS             9178..11466
                     /locus_tag="PXC99_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated helicase/endonuclease Cas3"
                     /protein_id="HDL5417962.1"
                     /translation="MEEHTIQSFYAHSGKLSDHSDWQTLLSHANNVGLLAAEFAAPFA
                     SQEIARCTGLLHDLGKYSERYQKRLHGGERVNHSTAGAKIAVERWGPLGKMMAFCIAG
                     HHAGLANGSGEGKNRSTLTQRLQEQFGYGHKDLPVLDAIWQQELNLPEKLPLPPLKPS
                     KNEPFFSYAFFIRMLYSCLVDADFLDTEAFYANLEKRPLERGNYPNLTALHQQFNQFI
                     AQFRERIATQTPNTQEAQRKAEVNRLRSEILDYAVSQAKQETGLFSLTVPTGGGKTFT
                     SMAFALEHAKQYGLCRIIYVIPFTSIIEQNAAEFRKAFGELGTEAVLEHHSTFDHDSL
                     PDKSSRDKLKLASENWDTPVVVTTAVQFFESLFADRSSRCRKLHNIVGSVIILDEAQM
                     LPLNLLRPIMAAIDELARNYQCSVVLCTATQPAIHQANGFYKGFENVREIAPNPTALF
                     EKLKRTTVKHIGIQTDVELQSKLADNPQMLIIVNNRRHARALYDSAKQLEGAYHLTTL
                     MCAKHRSQTLTEIRLRLKQNLPCRVIATSLIEAGVDVDFPLVMRAEAGLDSVAQAAGR
                     CNREGKRLSVESNVWVFQPEEQWKAPPELGLLSGCMRSTVQVHADDLLNPKAINHYFQ
                     AVYEAKGKELDKPNILKACHDAGQSLNFPFQKIAEDFRMITSHLIPVIIPFDQEAENL
                     IDRLRYADQVGGILRKLQPYTVQVPEKALAELYNAGRVETINETNFGKQFYCLIGMDL
                     YDEVAGLSWENVDFLESEKLVL"
     gene            11597..12190
                     /locus_tag="PXC99_001512"
     CDS             11597..12190
                     /locus_tag="PXC99_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417963.1"
                     /translation="MREPLLDEDELKKWLQTIFTDNLVIIVGSGLSCAEGLPGMGALA
                     DRLKERMPECLDDIDKVTWNTISDCLDSEGLEGALLKHQANETIEAAIIKITAEYVLS
                     EEQKAINKCIAENQKLKFSYLLPHISASNPKIARVITTNYDRLIEFAAEYENWGIDSM
                     MVGRYWGKHNPDLSRKLQIRDIRVKGKCPKLVYLIVP"
     gene            complement(12252..12668)
                     /gene="tnpA"
                     /locus_tag="PXC99_001513"
     CDS             complement(12252..12668)
                     /gene="tnpA"
                     /locus_tag="PXC99_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005720092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
                     /protein_id="HDL5417964.1"
                     /translation="MKKETEIRRGRHVVFNLHVHLVFVTKYRREVFTQAILNDLHSIF
                     ATICADFEATLVEFDGEDDHVHLLVEYPPKVAISHLVNSLKGVSSRMIRKKNYPSIRK
                     KLWGNQLWSPSYFAGSCGGAPISIIRQYIEQQQTPD"
     gene            12715..>13819
                     /locus_tag="PXC99_001514"
     CDS             12715..>13819
                     /locus_tag="PXC99_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5417965.1"
                     /translation="MLLRKAFKFEIRPNGEQVRKMKQFCGCSRFVFNKALAWQNEQYE
                     QDNHHKFSYTKLANLLPQWKKELVWLKDCHSQVLQQSLKDLESAFKNFFQKRADLPKF
                     KKKGVKESFRFPQGCKIEQKNDRLYLPKIGWVRYRNSREIVGEVKNVTVSMKCGRFFV
                     SIQTEFKQEIPTHKGGEIGIDMGIARFATLSNGEFFEPLNAFKTHKGKLAKLQKQLKN
                     KVKFSKNWQKLKDKIGKLHHKIANCRKDFLHKISTQISKNHAMIYVEDLQVANMSKSA
                     KGTAEVHGKNVKQKSGLNRVILDQSWFEFRRQLDYKTQWLGGFLLAVPPQNTSRTCPC
                     CNYTAKENRQTQENFECVECGYTENADVVGAMNV"
BASE COUNT         4403 a         2645 c         2939 g         3832 t
ORIGIN      
        1 aaactataaa gcagtttcgg ctggtaattt aaccaattac accctagatg ttaagacaac
       61 ttcggcagga acactgctaa aagaattatt cgaaacaaaa ctccctgttt tctctgcacc
      121 taaaaatcct aattttttaa gacatttaat aactctattt gaagataaaa attttatttc
      181 tttagatttc tttgctggca gttcatcatt tccacacgca atattggaaa gtaatagaat
      241 tgataagggt aatagaaaat ttattgcggt tcaatatcct gaagaaattg atatcaagag
      301 taagaatgga aaagtagcaa agcaattttg ccaaagaaaa aatttaccac tatatataac
      361 tgaaatttca aaagaacgta ttcgccgtgc cggaaagcag attttgcaaa ataaccccga
      421 aaaccgaccg cttgatgtag gttttaaagt cttcaaactg acagaaagcc attttaaaca
      481 atggcaatcg cccacatctg aaaatttagc cgatcaactt gaaatgttta ttgatcctgt
      541 tagtgaaaaa gcggatacgc aagccgtttt atatgagctt ttattgcgtt tagggttaaa
      601 actcacggca aaagtgcggt tggaaaataa ggtgttttgg gtggaagaaa acgggctgat
      661 tttcgccttg ctgttaaatg cagccgacga agaaattatt caaactgtta tcgctcaaca
      721 accgaaaaaa gtcatcgctt tagaccgttt attcaacggc aatgatgccc ggaagaaaaa
      781 caccgaattg caaatgcaag atgccggcat tacgtttttt gtgatttaag gagaaaaaat
      841 ggaactccaa tttgaaacct tagagtatca attacaagcc gttaatgcca cagtaaattt
      901 gtttgtcgga cagccgaatg ccgcaactga attttcactc aaagcccaaa atgatatgcg
      961 gtttgtgccg aatttaggct tgcagattag tgatgagcag ttacaacaga atttggctaa
     1021 tctgcaaaac aggcaaaaaa tcgaccgcac tttgcttgtc gaacagggaa aaaattttac
     1081 cgtggaaatg gaaactggta cagggaaaac ctatgtctat ttacgcacga tttttgaatt
     1141 aaaccgtcaa tacggctggc aaaaatttgt gattgtcgtg ccgagtgtgg caattcgtga
     1201 gggagtgttg catacgttgg aaactacaaa aagccatttt aatacggtat ttgataaccc
     1261 gagcgtcaat caaaaatttg aatataaaag taaccaaact tcacgcttaa aatcctttgc
     1321 tagtgctaat catattgaaa ttttagtgat gaatattgat gctttcacca aagaaagtaa
     1381 cgtgattaat accgtgaatg aaagcggtga tgctccgatt ttctatattc aacaggcgaa
     1441 tccgattgtg attattgatg aaccgcaaaa tatggaaacg gagattcgcc gtaatgcgat
     1501 tgagagttta agtccgcttt tcactttgcg ttattctgcc acccataaaa atgcgtataa
     1561 cccgattttt agcctcaatc cggtgcaagc ctatgaaatg ggattagtta aacaaattga
     1621 ggtagatagc gtattggcgg aaaatgaggt aaatggagct tatctttccc tcaaagagat
     1681 taaaacaggg gcaaaaagct ggtcggcaaa aatcgaaatt ttatttaacg ataaaaaagc
     1741 gatgaaaaag aaagtgatta gcgtgaaacc gaatcaggat ttgtatgagc tttccaacca
     1801 aaatgaaatg tatcgttcag ggtttatatt aagcggaatg gataccgata gccaaatggt
     1861 tagcttctcc aacggcacac aaatttttca aggggcggaa cattcccaac ttaaagaaga
     1921 tgtgcaaaaa atgcagattc gccgcactat tggcgagcat ttgcaaaaag aaaagaaatt
     1981 acgaccgctt gggatcaagg tgttgtcttt gttctttatc gataaagtgg ataattatcg
     2041 cccttctgca caaagcccta cggggggaaa atttgcaaaa tggtttgagg aaatttattt
     2101 ggagctagcc aaagaagagc ctcaaggcgt gcataacggt tatttctcac aggataaaaa
     2161 aggcgtagca aaagatacta atggcacaac gcaagcggat aacgagactt atcaactgat
     2221 tatgcgggat aaagaaaaat tgctttcgct ggagaatccg ttacggttta ttttctcgca
     2281 ttctgcctta aaagaaggat gggataatcc gaatgtgttt caaatttgta ctttaaacga
     2341 tactgcaagc gaaatgaaaa aacgccaaga gattgggcgg ggcttgcgtt tgcctgtgaa
     2401 tcaacaagga ttgcggattt atgatcgtca tctaaatacg ctgacaatta tcgcaaatga
     2461 aagttacgaa caatttgccg ccacattaca gcgtgaaatt gaggaagatt gtggtgtaca
     2521 gtttgccaaa agcaatgtta aaaaacggga agataaaaaa gccgttcgct accgtaaaga
     2581 tttcagctta catccggaat ttgcggcaat ttgggaacgg attaaacacc aaaccactta
     2641 tcgggtagat ttcagtaatg cggaattgat tgaaagtgcg gtggaaaaaa tccgcaaaat
     2701 gcccgatatc gaggcgacaa aaattaagca ttccaaagtg aaattggaaa tgaatgaaac
     2761 agggatttca actaattatc gctcatctaa tgaaacagcg gtaaatacac aatgggcgat
     2821 acctgattta ttgagtgaga ttcaaaagaa aaccgggctg acgcgtgcga ccctttgcaa
     2881 aattttacaa aaatccgacc gcttgcaaga agtcttccgc aatcctcaac gctttattga
     2941 tttaattgca gagaaaatca accttgcttt acaacaaatt atgacagacg gggtggaata
     3001 tcacaaaatt gccggaaaaa cctatgaaat gacgttattc ggcgattttg atttttacct
     3061 caatcaatat acttttgaag ttcaagataa aacaaaaacg atttatgaag actatattgc
     3121 actggattcc caaacagaaa atatcttcgc ccgacattgt gaatctagtg agcaagtgga
     3181 gttttatttt aaattaccca aacgttttaa aattccaacg ccattaggca gctataatcc
     3241 cgattgggca gttgtgttta agggagaaaa taaaatttac ttggttgccg aaacgaaaaa
     3301 tacaggcaaa ggtattcaag caggagtaga tgaagaaaaa ttagatgaaa gtgaacgaat
     3361 gaaaatcgac tatgcccgta agcatttcaa aggcttacag agagattata aggatttgga
     3421 ttatagggtt gtacagaaag tggaggagct gtctgcggag tattgtaaaa tttaatctgt
     3481 ggtcttgtag aattgagata gactgcaatt tcaactaaaa tttaaccgct tgttttgcga
     3541 tacttttacg catttttctg ctataatcgg cacaattttt tcgatttcaa attagtagga
     3601 ataagaatgt ctgaacaaac tcaagcaaca agttatgatt cttccagtat taaggtgtta
     3661 cgcggcttag atgcggtgcg taaacgcccg ggaatgtata tcggcgatac cgatgacggt
     3721 acgggcttac accatatggt gtttgaggtg gttgataatg cgattgacga agcattagcc
     3781 gggcattgta aagacattat tgtcacaatt cattccgata attcggtttc tgtgcaagat
     3841 gacggtcgtg gaattccggt ggggattcac ccggaagaag gcgtttcggc agcagaagtc
     3901 attatgactg ttcttcacgc aggcggtaaa tttgacgata actcctataa ggtttccggc
     3961 ggtttgcacg gtgtgggcgt atcggtggtg aatgcacttt cctctaaatt acaactcact
     4021 attcgccgtg aaggacacgt tcacgagcaa ttctatagct taggtgagcc tgatgcacct
     4081 ttagcgatta tcggcaatac cgaaaaaacg gggacgtcgg ttcgtttctg gccaagtttg
     4141 gatattttca aaaataaaac cgaatttgaa tataaaattc tgtctaaacg cttgcgtgaa
     4201 ctatcatttt tgaattcagg cgtttcgatt aaattaattg atgaacgaga cggcaaagaa
     4261 gagcatttta aatatgaggg cggtattaaa gcctatgttg agtatttaaa cgaaggcaaa
     4321 actcatattc acaatacgcc attctatttg accactgaga aagacggcat tggcgtggaa
     4381 atttccctac agtggaatga cagttacaac gaaaatgtgt actgctttac caataatatt
     4441 ccacagcgtg atggcggtac gcacttagcc ggtttccgtg gggcattaac tcgtgcgttg
     4501 aaaaactata tggataacag cggggtattg aaaaaagccg atgcgaacat tgatgcctca
     4561 ggtgatgatg cccgtgaagg tttagtagcg gtgatttcgg tgaaagtgcc ggatccgaaa
     4621 ttctcctcac aaaccaaaga taaattggtg tcgtcagaag tgcgtggagc agtggaaagc
     4681 tcaatgaatg aggctttatc cgactattta gccgaaaatc cggacgatgc aaaaaatatc
     4741 gttaccaaaa ttattgatgc agcccgtgca agagaagcag ctcgtaaagc ccgtgaaatg
     4801 acccgccgta aaggggcgtt agatttaggc ggcttaccgg gtaaattagc tgattgtcag
     4861 gaaaaagatc cggcgttatc ggagctttac ttggtggagg gtgactctgc cggtggctcg
     4921 gcaaaacaag ggcgtgaccg taaaaaccaa gcgattttgc cgttaaaagg gaaaattctg
     4981 aacgtggaaa aagcccgctt tgataaaatg ctttcttcac aagaagtagc aaccttgatt
     5041 accgctttag gcacaggcat cgggcgtgat gattataatt tggaaaaatt acgttaccac
     5101 aaaatcatta ttatgaccga tgcggacgtg gatggtgcac atattcgtac gcttttatta
     5161 actttcttct accgtcaaat gccggagctg attgaaaacg gctatattta tattgcacag
     5221 ccaccgcttt ataaagtgaa aaaaggcaag caagagcgtt atattcaaga taacgatgaa
     5281 atgtcgcaat atgaaattga tattgcatta gaaggtgcag gcttatatgt gagtgaagat
     5341 gctccagcgt taagtggcgt agcgttagag aacttaattg cccaatataa cggcgtacaa
     5401 aaattaattg aacgtttaag ccgtcgttac ccaacattat tacttaacga attaatttat
     5461 tcaaaaccgc tttcggtgga atttgcaaaa aatcaagcaa atatgaccgc ttggagcgag
     5521 caatttgtcg ctacattgat ggcaaaagag gtgggcggca gtttctaccg tattaatacc
     5581 ttgttcaatg aagaacgcca aatttatgag ccggaaatta ttgtgactac acacggtatg
     5641 gacagtacct atcgtttaga ttacaacttt atcaacggta atgaatacgc tcgcattgtg
     5701 gcattaggca acgagctgaa cgatttacta tctgattcag cctatgtggt gcgtggtgaa
     5761 cgtcgccaag aaatcagcag ttttgctgaa gccttagatt ggttggtgaa agaatctcgt
     5821 aaaggcttaa ctattcaacg ttataaaggg ttaggtgaga tgaatccgga acaattatgg
     5881 gaaaccacga tggatccggt ggctcgtaaa atgctacagg tcaatattac cgatgcgatt
     5941 gcggcagata aactcttcag tacgctgatg ggcgatgaag ttgaaccacg ccgagatttc
     6001 attgaaacta acgctttgta tgctcagtta gatatttagt taaaaaatcc gcatttgaca
     6061 tgcggatttt ttattctctt aaactagcat tttaagcatt cgctaaaatc accgcccgct
     6121 tcggagcagg gtagccttca atggttttgc tatgatcgtt tggatctaaa aaatccacta
     6181 aactttcatt ttccaaccaa tcggtttttc gctgctcttc tagtgtagtg attgcctcat
     6241 caacacaacg cacattttta aagccgactt tttccagcca attaatgagt gcagcaacag
     6301 aaggaataaa atagatattt ttcattttcg catagcgatc agccggcact aaaacatcat
     6361 taatatcgcc atcaatcacc agcgtttcta acaccaattc accgcctctg actaattggg
     6421 ctttgagttg agaaagatga tcaagcggtg atttgcgatg ataaagcacc cccattgaaa
     6481 acacggtatc aaaagcagca agcggttgca tttgctcaat accaagtgga atcagattag
     6541 cccgtctatc attccctaag agtttccgca ctgcctcaaa ttggcacagg aacagctcgg
     6601 tcgggtcaat accaactacc atttttgccc cttcgcctac cattcgccac atatgataac
     6661 cgctaccgca gccgacatct aaaatggtgc ggtcttttaa cggtgcaaga tgcggaagca
     6721 cacgatccca tttaaaatcg gaacgccatt cggtatcaat atgaatcccg tgtagatgat
     6781 aagggccttt acgccacggc attagttgct ttaaatggtg ggtaatttgc ttgacttccc
     6841 cctcagataa aggcttgctt gaaatagact caaccttgtc ttttagattg atacaagcgg
     6901 tcgaatttgg taaaaaatct gcaacttttg cccacttggc atagtcagcg tggggggtct
     6961 tttcccattg tttgagttgt aagggtaagg tttctaacca agcagaaagg tcggttgtgg
     7021 caatttgttg ataaaaagga cgaaagtcaa tcattttgaa atttatgtct aggggagaga
     7081 cctatgccct cccgaaaggt agtaaataga aaggacaggc acagaaccta cccctacgaa
     7141 aaatataaaa ttatctcgca atcggattta ctttcgcttt ttgcactttg cgataagcgt
     7201 tcagtaattt ctgatgtgca gtcatatttt caagcgattc gtccgatgca gttaaaccgt
     7261 ggaacgggtt accgccttgg attgcacccc aagcagcttc aaccgcttgt ttaccgtaca
     7321 ttttctcaaa caccatacga tattgttccg aatcacgctc ttcatctaag aacaactcaa
     7381 tcgattggat taagcagcgg taataattgt tacgttctgc tgagaatacg cttgcattca
     7441 tattcgctgt ccagtttgcc cagtctgagg cttgctctaa gttacctaaa gctaaatgca
     7501 gcatcgattt aagctcaccg atacgcaatg tttgcattgc agagcctttc tctgccacca
     7561 cgccaataaa ttcacgcaca cgggttaaat catcaatgct ttgctcatct aattcatcaa
     7621 gcagttcttg gtaagtttca gcatcgtgat ggaaatgtgg caaatctaac aagatttcac
     7681 gccaatccat acccatattg ttattggcat agaccaaatc atcgcttgga tagatattcg
     7741 acatacccgg tgcaagaata cggcaagcgt acacacctaa atgctcataa tccataatat
     7801 acacaggctg attatgcttg ttgaaaatcg ccatcatatt attaaattct tgctccgttg
     7861 tgccggagaa gtcccaatgc acgaacggat aatccgcatc acgtttgaaa agatcccacg
     7921 aaattagacc gcttgaatca ataaagtgtg tctcaaggtt cgcatgatct gctacatctt
     7981 cattattaaa tgaaggtggg gcaaacacat ctaaatcctt taagctacgg ccttgtaata
     8041 actcggttac ggtacgttca aacgccactt ggaaattcgg gtgtgcacca aaagaggcaa
     8101 aacaagtacc gttatttggg tttaacaaga tcacacaaat aactggaaat tctccgccta
     8161 atgaagcgtc atagcataaa atcgggaagt cttcttgctc tagtttctcg atagaggctt
     8221 tgattgtcgg ataaccgtca atcacacttt gcggaatttc cggcaagctg attgcctcag
     8281 taataatacg gtttttgaca aaacgctcga acacttcgga taagccctgc actcgagctt
     8341 cattttttgt gttgcctgcc gacataccgt ttgaaacaaa caggttgccg ataatgcttt
     8401 gcggaatgta aaccgtttca ttgtcagatt ggcgaacgta aggtagggta acaattccac
     8461 gatcataatt tcctgattgt aaatcaacca ataattccgg cgtgatttca ccattcggat
     8521 caaaatattc ccataaaaac tcgtccatca tctccattgg tggaatggct tcatcatcaa
     8581 tcggaaacca tttttcggtt ggataatgca caaattcact attagcaatc tcttgaccta
     8641 aataaaaatc cgcccagaaa tagttggtag ataaacgctc aaaatactca cctaatgcag
     8701 aggcaagagc ggcttttttg cttgctccct taccgttaga aaaacattgc ggacagtctg
     8761 catcacgaat atgcaccgac cacacattcg gaacaggatt taaccaagag gcttcttcaa
     8821 tattaaaacc taaggttttt aatttatgct gaaaggtcgc aatgctgtct tcaagtgcag
     8881 catctttacc ggtaataaaa gtttgttctg acatgataat acctttaact tgtcgtaaaa
     8941 atggcaacat tctagcaaaa atccccatag ataagtaaat tttttgtgaa atttctgctg
     9001 aaagaacaga tttcaaaact tagaaaaaat gattacaagc ggtcaaattt tacttgaatt
     9061 ttgcaagtga aatttgtgtt tgatttagat taagaaaata ttatctagga tatatacaga
     9121 ataaaaggtt agaggtagta ttgcttgtgt taggaaggaa atattgaagg tataaaaatg
     9181 gaagaacata ctattcagtc tttttatgcc cattcgggga agctttcaga tcattcagat
     9241 tggcaaactt tactcagcca cgccaataat gttggcttgc ttgccgccga atttgctgcg
     9301 ccgtttgctt cacaagaaat tgctcgctgc acggggctat tgcacgattt aggcaaatat
     9361 agtgaacgtt accaaaagcg tttacatggc ggagaacggg taaatcactc tactgctggt
     9421 gcaaaaattg cagtggaacg ttgggggcct ttgggcaaaa tgatggcgtt ttgtatcgca
     9481 ggccaccacg ctgggttagc aaatggttct ggagaaggga aaaatcgttc tacacttaca
     9541 caacgtttgc aagagcaatt tggctatggt cataaagatc taccggtact tgacgctatt
     9601 tggcagcaag aacttaattt gcctgaaaaa ttgcccttac cgccgttaaa gccttctaaa
     9661 aacgaacctt tcttttctta cgcctttttt atccgaatgc tctattcttg ccttgtcgat
     9721 gccgactttc ttgatacaga agctttttat gccaatctcg aaaaaagacc gcttgaacga
     9781 ggaaattacc ccaatttaac cgcactccat cagcaattta atcaatttat tgcacagttt
     9841 agggagcgaa ttgccactca aacgcctaat acgcaggaag cacaacgtaa agcggaagta
     9901 aaccgcttgc ggagtgaaat tttggattat gccgtatctc aagcaaaaca ggaaacaggt
     9961 ctgttttctc tgactgtgcc aacgggcggt ggtaaaacct ttacttcaat ggcgtttgcc
    10021 cttgagcatg ctaaacagta tggtttatgc cgcattattt atgttattcc gtttaccagc
    10081 attattgaac aaaatgctgc ggaatttcgt aaagcttttg gcgaattagg aacagaggcg
    10141 gtattggaac atcacagcac ttttgatcac gatagcctac ctgataaatc aagccgagat
    10201 aagctgaaat tggcatcaga aaattgggat actcctgttg tggttacaac tgcagtgcaa
    10261 ttctttgaaa gtttgtttgc cgaccgttct tcacgctgtc gcaaattgca taatatcgtc
    10321 ggtagcgtga ttattttgga cgaagcccaa atgctaccgt tgaatttatt acgcccaatt
    10381 atggctgcga ttgatgaatt agctcgcaat tatcaatgtt cggtagtgct ttgcacagcg
    10441 acacaacccg ctattcatca agcgaacggt ttttataaag gatttgaaaa tgtgcgagaa
    10501 attgccccta atccaaccgc actttttgaa aaattgaaac gtactacggt aaagcatatc
    10561 ggtattcaaa cagatgtgga gttgcaaagc aaactcgcag ataacccaca aatgctgata
    10621 atcgtgaata accgccgtca cgcccgagcg ttatatgatt cagcgaaaca gttagaggga
    10681 gcttatcacc tcaccacgct aatgtgtgct aaacaccgct cacaaacgct gactgaaatt
    10741 cgtcttcgcc taaaacaaaa cctaccttgc cgagtgattg ccacttcttt aattgaagcc
    10801 ggtgttgatg tcgatttccc actggttatg cgagctgaag caggactaga ttcagtggct
    10861 caagcagcag ggcgttgcaa ccgagagggg aaacgtttat ctgtagaaag caatgtttgg
    10921 gttttccaac ctgaagaaca gtggaaagca ccaccagagc taggcttact ttctggctgt
    10981 atgcgttcaa cggttcaggt tcacgcagat gatctactta atccgaaagc aatcaatcat
    11041 tatttccaag cggtttatga ggctaaagga aaagagctgg ataagccaaa tattttaaag
    11101 gcgtgtcacg acgctgggca aagccttaat ttcccattcc aaaaaatagc tgaagatttc
    11161 cgaatgatca caagccattt aattccggtg attatccctt tcgaccaaga agccgaaaac
    11221 cttattgacc gtttacgcta tgcggatcaa gtaggcggta ttttaagaaa actccagcct
    11281 tacactgtgc aagtaccgga aaaagcatta gccgaactct ataacgctgg cagagttgaa
    11341 accattaatg aaaccaactt cggcaaacag ttttactgct taattggaat ggatttgtat
    11401 gatgaagtgg cggggttgag ttgggagaat gtggattttc ttgagtcgga gaaattggtt
    11461 ttatagatga atgtttattt taacttcttt ataagtttaa ttttgcatag atatacttta
    11521 atataccaaa tagcctatga cgtctcgtag taaacagcta gtttgtaaga atagatattt
    11581 ggaagggaaa cgtaaaatga gagaaccatt attagatgaa gatgaattaa aaaaatggtt
    11641 gcaaactatt tttactgaca atttggtcat tattgtcggt tcgggtttgt cctgtgccga
    11701 aggtttgccg ggaatgggag cattagctga tagattaaaa gaacgaatgc ctgaatgtct
    11761 tgatgatata gataaggtaa catggaatac catttctgat tgtctggatt ctgaaggctt
    11821 ggaaggtgca ttgttgaagc atcaagcaaa tgagacgata gaagccgcta ttattaaaat
    11881 aacagccgag tatgtactct ccgaagagca aaaagcgata aacaaatgta ttgctgagaa
    11941 tcagaagctc aaattttctt atttgcttcc ccatatttca gcttcaaatc ctaaaattgc
    12001 ccgtgtaatt actactaatt atgatagatt gattgagttt gcggcagagt atgaaaattg
    12061 gggaatagat tcaatgatgg tcggtcgtta ttggggaaaa cataatcctg atttgagtag
    12121 gaaattgcag ataagagaca ttagagtaaa aggtaaatgt ccaaaattgg tttatctaat
    12181 cgtgccgtaa aaccacgtcc tttagggcgt ggatataagg tataaacggc aaagccgttt
    12241 caaatttcta actaatcagg tgtttgttgt tgctcgatat attggcgaat aatcgatatt
    12301 ggtgcaccac cacaactacc agcaaagtaa gacggtgacc aaagttgatt tccccataat
    12361 tttttgcgaa tgctcggata gtttttcttt ctaatcattc ggctcgaaac gccttttaaa
    12421 ctgtttacaa gatgagaaat agcgacttta ggcggatatt ccacaagtag atgaacgtga
    12481 tcatcttcac catcaaattc cactaatgtg gcttcaaaat cagcacaaat cgttgcaaaa
    12541 attgagtgta agtcgttcaa aattgcttga gtaaaaactt ccctgcgata tttagtcacg
    12601 aaaactaaat gaacgtgtaa gttaaaaaca acgtggcgac cacgtctaat ctctgtttct
    12661 tttttcatag gccaagtgta gaataagcac aatttttgta ttctaattcg tgcaatgtta
    12721 ctacgtaaag cctttaaatt tgaaatcaga ccaaatgggg aacaagttcg caaaatgaag
    12781 cagttttgcg gctgttctcg ctttgtgttt aacaaggcat tggcgtggca aaatgagcag
    12841 tacgaacaag ataaccatca caaattcagt tataccaagc tcgccaactt gcttccgcaa
    12901 tggaaaaaag aattggtatg gcttaaagat tgccattcac aagtgcttca acagtcgtta
    12961 aaagaccttg aaagtgcgtt taaaaacttc tttcaaaagc gtgcggattt gcccaaattc
    13021 aagaaaaaag gcgtaaaaga gagtttccgt tttccgcaag gttgcaaaat cgagcagaaa
    13081 aacgaccgct tgtatctgcc gaaaatcggt tgggtgcgtt atcgcaacag tcgtgaaatt
    13141 gttggggaag taaaaaatgt caccgtttca atgaaatgcg gacgcttttt tgtgagcatt
    13201 caaacggaat ttaaacagga aattcccacg cataaaggcg gagaaatcgg cattgatatg
    13261 ggcattgctc gttttgcaac cctttccaat ggagaatttt ttgagccgtt aaatgcgttt
    13321 aaaacccaca aaggaaaatt ggcaaaactg caaaaacagc taaaaaataa agtgaagttc
    13381 agtaaaaact ggcaaaaact gaaagataaa atcggcaagt tacatcacaa aatcgccaac
    13441 tgccgaaaag atttcctgca taaaatctca acgcaaatca gcaaaaacca cgcgatgatc
    13501 tatgttgaag atttgcaagt ggcgaatatg tccaaatcag ccaaaggcac agcggaagta
    13561 cacggcaaaa atgtgaaaca gaaatcaggc ttaaaccgag tgatattaga ccagtcttgg
    13621 tttgaattta gacgacaact ggactacaaa acgcaatggt taggcggatt tttgctagca
    13681 gttcctccac aaaataccag tcgtacttgc ccttgttgca actatacagc aaaagaaaat
    13741 cgccaaacac aggaaaattt tgaatgcgta gaatgtggct atacggaaaa tgccgatgta
    13801 gtgggagcaa tgaatgttc
//
LOCUS       DANLVT010000061        13790 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.061, whole genome shotgun sequence.
ACCESSION   DANLVT010000061 DANLVT010000000
VERSION     DANLVT010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13790)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13790)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13790
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.061"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(79..795)
                     /gene="rph"
                     /locus_tag="PXC99_001515"
     CDS             complement(79..795)
                     /gene="rph"
                     /locus_tag="PXC99_001515"
                     /EC_number="2.7.7.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001261764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HDL5417966.1"
                     /translation="MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVE
                     ESVPRFLKGQQQGWVTAEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVV
                     DLKALGERTVTVDCDVIQADGGTRTASITGACVALYDAMNKLVANGTLKTNPMKGLVA
                     AISVGIVAGEAVCDLEYLEDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHQELLTLL
                     DLAKQGISQLVEAQRKALAE"
     gene            1076..1939
                     /locus_tag="PXC99_001516"
     CDS             1076..1939
                     /locus_tag="PXC99_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011272075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YicC family protein"
                     /protein_id="HDL5417967.1"
                     /translation="MIYSMTAFAHLEMKKEWGNAVWEIRSVNQRFLETYFRLPEQFRN
                     LEMTLRERLRSALTRGKVECSLRIDLSKTQNSEIALNKEYAAQVVQSLKWLKETANEG
                     EINLVDVLRFPGVVDNESQDLDQIAQDLLAGFEQILADFIAMRAREGENVQALILQRL
                     EAISVEAAKVQAQMPEILQWQKDRLQQRFDELNLQLDPQRLEQEMVLLAQRVDVAEEL
                     DRLQLHVKETTNILKKGGAVGRKLDFMMQELNRESNTLASKSINADVTNSAVELKVLI
                     EQMREQIQNLE"
     gene            1948..2838
                     /locus_tag="PXC99_001517"
     CDS             1948..2838
                     /locus_tag="PXC99_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein YgfZ"
                     /protein_id="HDL5417968.1"
                     /translation="MAMNFKQVSQSYPNLCVPLSQYCLIEIAGVDAEKYLQGQLTCDV
                     AKISVGEHTLTSHCDPKGKMSALLRLYRAENEKFMAIIHRSLLPEALTQLKKYAVFSK
                     VTFTELDTPLYGMAGEAAFAKLSENMTALRLTTGQPRAIVWGEELETTADEQLWTLMD
                     IQDGIPVLLQQNQFELIPQATNLQALESAISFTKGCYIGQETVARAKYRGANKRALFT
                     LAGNFESEISLPEVASAIEMQLGENWRATGTVLTSATDENTLWVQVVLNKDVEPNTKF
                     RANGVALEMVELPYSLAENE"
     gene            complement(2870..3130)
                     /locus_tag="PXC99_001518"
     CDS             complement(2870..3130)
                     /locus_tag="PXC99_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001196283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HDL5417969.1"
                     /translation="MALLITHKCTNCDMCLPECPNEAISVGDDIYIIDPVLCTECVGH
                     YEKPTCQKVCPITNCIIKDPDNIETEEQLWERFVMIHHPDQI"
     gene            3360..3779
                     /gene="rbsD"
                     /locus_tag="PXC99_001519"
     CDS             3360..3779
                     /gene="rbsD"
                     /locus_tag="PXC99_001519"
                     /EC_number="5.4.99.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005753460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-ribose pyranase"
                     /protein_id="HDL5417970.1"
                     /translation="MKKTLNLNAQLSHSIATLGHTDSLTVCDAGLPIPNTIERIDLAL
                     TAGVPSFLQTFDVVVSELFVERVLLAEEIKHKNPQVLAALLERLTQLEQTQQNKIQID
                     YVNHEIFKEQTHYSKAVVRSGECSPYANIILYSGVPF"
     gene            3789..5285
                     /gene="rbsA"
                     /locus_tag="PXC99_001520"
     CDS             3789..5285
                     /gene="rbsA"
                     /locus_tag="PXC99_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter ATP-binding protein RbsA"
                     /protein_id="HDL5417971.1"
                     /translation="METLLKMSGIDKEFPGVKALSNACLSVYGGRVMALMGENGAGKS
                     TLMKVLTGIYSKDAGSISYLGKEVTFKGPKDSQEAGISIIHQELNLVGNLTIAENIFL
                     GRESKTAWGAIDWKKMYAEADKLLARLGVKHSSHQLCAELSIGEQQMVEIAKALSFES
                     QVIIMDEPTDALTDTETASLFKVIRELKAENRGIVYISHRLKEIFEICDDVTVLRDGQ
                     FIGERVIADIDEDQLIEMMVGRRLEEQYPHLHQERGELLLEVKNLSGSGVNNVSFQLH
                     KGEIVGISGLMGAGRTELMKVLYGALPKTAGSIELNGKAISNHCPQDGLNNGIVYISE
                     DRKGDGLILGMSVKENMSLTSLDHFSKAGSIRHDAEKLAVDDFIEMFNIKTPSREQQI
                     GLLSGGNQQKVAIAKGLMTRPNVLILDEPTRGVDVGAKKEIYQLINEFKKDGLSILMV
                     SSDMPEVLGMSDRILVMHEGQISAEFSRAEATQEKLLAAAIGKSTGLN"
     gene            5295..6263
                     /gene="rbsC"
                     /locus_tag="PXC99_001521"
     CDS             5295..6263
                     /gene="rbsC"
                     /locus_tag="PXC99_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005753457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter permease"
                     /protein_id="HDL5417972.1"
                     /translation="MATQTKQFQLGRFLIEQRSFVALFILIVSVSMINPDFFSVDNIL
                     NILRQTSVNAIIAVGMTFVILIAGIDLSVGSVLALTGAVAATLVGSELPILLVIPLVL
                     LLGTAFGGISGAIVAKGKVQAFIATLVTMTLLRGITMVYTDGRPISTGFSDQADAFAF
                     IGTGYLFGIPVPIWIMAVVFGLAWYILKHTPIGRYIYALGGNESATQLSGINVNKIKI
                     FVFAVSGFLSALAGLIVTSRLSSAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTL
                     VGALIIGFLNNALNLLDISSYYQMIAKALVILAAVLADNYLGTKKV"
     gene            6286..7164
                     /gene="rbsB"
                     /locus_tag="PXC99_001522"
     CDS             6286..7164
                     /gene="rbsB"
                     /locus_tag="PXC99_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006995182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter substrate-binding protein
                     RbsB"
                     /protein_id="HDL5417973.1"
                     /translation="MKKLTTIASAVMLSLSVAATASAKETIALAVSTLDNPFFVSLKD
                     GAQKKADELGYKLVVLDSQNDPAKELSNVEDLTVRGAKVLLINPTDSEAVGNAVAIAN
                     RNKIPVITLDRGAAKGEVVSHIASDNVAGGKMAGDFIAQKLGSGAKVIQLEGIAGTSA
                     ARERGEGFKQAIEAHKFNVLASQPADFDRTKGLNVTENLLSSKGDVQAIFAQNDEMAL
                     GALRAVSSAKKEVVIVGFDGTDDGVKAVESGKLAATIAQQPELIGSLGVETADKVLKG
                     EKVEAKIPVDLKVISK"
     gene            7285..8214
                     /gene="rbsK"
                     /locus_tag="PXC99_001523"
     CDS             7285..8214
                     /gene="rbsK"
                     /locus_tag="PXC99_001523"
                     /EC_number="2.7.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribokinase"
                     /protein_id="HDL5417974.1"
                     /translation="MKKLTVLGSINADHVISVPYFAKPGETLTGHSCHIAYGGKGANQ
                     AVAAARLGAKVSFIGCIGSDDIGKAMKSAFEQDGIDTRSIKTIPNEMTGIAMIQVAES
                     GENSIVISAGANGHLDETVVAKCAAEITQADYLLMQLETPLPAIVQAAKLAQQNGTKV
                     ILNPAPARALPDELLNLLDMITPNETEAEILTGVKVVDEASAIQAAQVFHQKGIEKVL
                     ITLGSKGVFVSENGVGKIVAGFRVQAVDTTAAGDTFNGALVTAMLEDKPLDQAIRFAH
                     AAAAISVTRKGAQPSIPTRQETLDFLSQQAVSF"
     gene            8228..9238
                     /locus_tag="PXC99_001524"
     CDS             8228..9238
                     /locus_tag="PXC99_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL5417975.1"
                     /translation="MATMKDIARLAQVSTSTVSHVINNSRFVSEEIRERVQRVVKELN
                     YTPSALARSLKVNETKTIGMLVTATGNPFFAEVMAGVEQYCQQHQYNLIIATTNGDTE
                     RLQHHLQMLMQRKVDGLLLMCGDTRLNADESLNIPLPLVVLDWWFTELNADKIFENSI
                     SGGYLATKTLIEAGHSKIAIITGNLKKSLAKNRLEGYKKALAEANIPLNPNWVFESHF
                     DFAGGVNGMNALLAQSEKPTAVFACSDTIALGAYQAIWQQGLRIPQDISIIGYDDIEL
                     AKYLSPPLSTISQPKAELGRLAVETLLKRIRFKSTDFQTIMLEPELVLRHSIQTINKN
                     AE"
     gene            complement(9274..9903)
                     /locus_tag="PXC99_001525"
     CDS             complement(9274..9903)
                     /locus_tag="PXC99_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDL5417976.1"
                     /translation="MTAPTQILLIDDHPLMRQGMRQLLELDHQFSVVGEASNGTDGIK
                     LALRLEPDVIILDLNMKGLSGLDTLRSLRAQGIDARIIVLTVSDEQSDVFALMDAGVD
                     GYLLKDTDTPELLDNIRKAAAGEVVLSETVRQHLLNRQPENDPLSCLTDRELDVLQWL
                     ATGMSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLEQQKG"
     gene            10101..12260
                     /gene="rlmKL"
                     /locus_tag="PXC99_001526"
     CDS             10101..12260
                     /gene="rlmKL"
                     /locus_tag="PXC99_001526"
                     /EC_number="2.1.1.173"
                     /EC_number="2.1.1.264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 23S rRNA
                     (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA
                     (guanine(2445)-N(2))-methyltransferase RlmL"
                     /protein_id="HDL5417977.1"
                     /translation="MTNQTTYFATAARGFEEILKTELEQICAAECKVAQGGVHFTTTQ
                     KGAYQALLHSRLASRILLPLISTKIFSDSDLYASIVSFNWADLFDPRDTFYIDFSGTN
                     REIRNTQFGAMRVKDGIVDYFERKGFARPTVDKDNPDVRIHVYLDRENVVVSLDLSGD
                     ALHIRGYREETGKAPLRETLAAAIILRSGWKVGTPLVDPMCGSGTLLIEAAQMAANIA
                     PQLHRKHWGFNAWKGHQQAMWKAVLDEAFRNVELGAVGENCNSSLQKMFFGFDLDHRV
                     LTKAKQNAKNAGVDHLIQWQQGDVAALKNPIPEKIGTVVCNPPYGERLGTTPALIALY
                     SVFGQRLKQQFAGWNASIFSGEPELLNCLRLRSARQFKAKNGPLDCVQKNYSISEHNK
                     RSDLDENLQFEQNAQVAPDFANRLTKNIKKIEKWAKQQGIDAYRLYDADLPEYNLAVD
                     RYGDHIVVQEYQAPKNIDEQKARQRLLDAVSATLYVTGVETNKLVLKVRQKQKGTNQY
                     EKLANKGEYFYVNEYGAKLWVNLTDYLDTGLFLDHRLTRKMVGEMAKGKTFLNLFAYT
                     GSATVHAALNGAKSTTTVDMSNTYLNWAEQNLELNNLSLRHHRLFQADCLQWLAECRE
                     RFELIFVDPPTFSNSKRMENSWDVQRDHIELMKQLKRILTADGTIVFSNNKRGFKMDF
                     DGLAALGLTAENISHKTLPLDFERNPQIHNCWIVKNV"
     gene            12437..12916
                     /gene="trmL"
                     /locus_tag="PXC99_001527"
     CDS             12437..12916
                     /gene="trmL"
                     /locus_tag="PXC99_001527"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HDL5417978.1"
                     /translation="MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPFGFGWDDKKL
                     RRSGLDYHEFVDIQKYKNFEDFLERAKPKRLFALTTRGEQNHSDVKYELGDFLMFGPE
                     SRGIPKPLLAEMPMSQKIRIPMCKDSRSMNLSNSVAVVVYEAWRQFGYQNAVAAQSI"
     gene            complement(13010..>13790)
                     /locus_tag="PXC99_001528"
     CDS             complement(13010..>13790)
                     /locus_tag="PXC99_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Bro-N domain-containing protein"
                     /protein_id="HDL5417979.1"
                     /translation="SHYDEEKDKWYFSIIDVIAILTESLDPSAYWRKLKQRLKAEGNE
                     TVTNCHGLKMPSADGKMRLTDVADTEQLFRLIQSIPSPKAEPFKQWLAKVGYERLQEI
                     NDPSQSLDRARENWQKMGRSEKWIQQRMMGQETRNKLTDYWKSSGVEQPQDFAFLTNV
                     IHQEWSGLSVQKHKSLKGLKSQNLRDHMSEAELLFTALAELSSRQIAESMQAVGVDEN
                     AQAGKQGGNIAKNARQELENKTGKSVVTGENFLPPAKNEEE"
BASE COUNT         3976 a         2707 c         3205 g         3902 t
ORIGIN      
        1 tacatctgaa tcagaacggt tattctgttt tgtcagatgt agattttatt taaaaagaaa
       61 atcaaaaaga gaagtgaatt attcagctaa cgctttacgt tgagcttcaa ctagctggct
      121 aatgccttgc ttcgctaaat ctagcaatgt cagtaattct tggtgcgaga acggttcgcc
      181 ttctgccgtg ccttgtactt ccactaaacg accatcttcg accatcacca cgttcatatc
      241 agtttcagcg ttggaatctt ccagatattc taaatcgcac accgcttcgc ctgctacaat
      301 accgacagaa attgctgcga ctaaaccttt cattgggtta gtttttagtg ttccattagc
      361 tactaactta ttcattgcat cgtacaatgc tacgcacgca ccggtaattg aggcggtgcg
      421 agtgcctcca tcggcttgaa taacatcaca atctacggta acggtacgtt cgcctaaggc
      481 ttttaaatct accaccgcac gcagagaacg ggcaatcaag cgttggattt ccattgtgcg
      541 tccgccttgt ttgccttttg ccgcttcacg ctgagtgcga gagtgggtgg ctcgtggcaa
      601 cataccatat tctgcggtaa cccaaccttg ttgctgacct tttaaaaagc gtggcacgct
      661 ttcttctacc gtagcgttac acaatacttt ggtttcgcca aactcaatta ataccgagcc
      721 ttcggcatag cgagtgtagt tacgggtaat tttaatttct ctaacttggt tgtttgctcg
      781 attatttgga cgcattttct tttccttttg ctaaaatttt taccatttta gcaaagaaca
      841 cagtaaaatg tgatttttct ttagcaaaga atttacatag ccctcgcccc ttgtgggaga
      901 gggacggatt tttcttcgtt cagaagaaaa atcagggaga ggggtaagcg gttattttta
      961 tctcaaattt tacaaattcc tccctctctc tgaaaaatat ttctgaacga aatatttttc
     1021 ggtctctctc cctcaagggg agagagcttt acttataaaa acacaaggaa taccaatgat
     1081 ttatagtatg acagcatttg cccatttaga aatgaaaaaa gagtggggca atgcggtgtg
     1141 ggaaattcgc tcggtaaatc aacgcttttt agaaacctat tttcgtttgc cggagcagtt
     1201 tcgcaaccta gaaatgacct tgcgtgagcg tttacgttct gcactgacac gaggcaaagt
     1261 agagtgtagc ttacgcattg atttaagcaa aacccaaaac agtgaaattg cgttaaacaa
     1321 agaatatgcc gcacaggtgg ttcaatcatt aaaatggtta aaagaaaccg caaatgaagg
     1381 cgaaatcaac cttgttgatg tgctacgttt cccgggcgtg gtggataatg aaagccaaga
     1441 tttagaccaa attgctcaag atttattagc cggctttgaa caaattctgg cagattttat
     1501 cgcaatgcga gccagagagg gcgagaacgt gcaagccctg atcttacaac gtttagaagc
     1561 aatttcagtt gaggctgcaa aggtacaagc ccaaatgccg gaaattctgc aatggcagaa
     1621 agatcgttta caacaacggt tcgatgaact gaatttacag cttgatccac aacgcttaga
     1681 acaagaaatg gtgttacttg cccaacgtgt tgatgtggcg gaggaattag accgcttgca
     1741 attacacgtt aaagaaacca ccaatatcct gaaaaaaggc ggtgcggttg ggcgtaaact
     1801 ggattttatg atgcaagaac taaaccgtga atccaacacg ctcgcctcaa aatcgattaa
     1861 tgcggacgtg accaattcgg cggtggagct gaaagtgttg atcgaacaga tgcgtgaaca
     1921 aattcagaat ttagaatagg acagattatg gcaatgaatt tcaagcaagt gagccagagc
     1981 tatccaaatc tctgcgtgcc gctttctcag tattgtttaa ttgaaatcgc aggggtagat
     2041 gctgagaaat atcttcaagg gcaattaacc tgcgatgtgg caaaaatttc ggtgggcgaa
     2101 catacgctaa ccagccattg tgatccgaaa ggcaaaatga gtgcgttact gcgtttgtat
     2161 cgtgcagaaa atgagaaatt tatggcgatc attcaccgca gcttattgcc tgaagccctg
     2221 acgcaactta aaaaatatgc ggttttttca aaagtgacct tcacggaatt agacacccca
     2281 ctttatggta tggcaggtga agcagcattt gcaaaattaa gcgaaaatat gaccgctttg
     2341 cgtttaacca caggacagcc tcgggccatt gtttggggcg aagagcttga aacgactgcc
     2401 gatgaacagc tctggacatt aatggatatt caagacggca ttcctgttct cttgcaacaa
     2461 aaccagtttg agctgattcc acaggcaacc aatttacagg cacttgaatc tgcgatttca
     2521 ttcaccaaag gttgctacat cgggcaagaa acggtagcga gagcgaaata tcgtggggcg
     2581 aataaacgtg ctttatttac ccttgccggc aactttgaaa gcgaaatcag cttaccggaa
     2641 gttgcttctg cgattgaaat gcaactgggc gaaaattggc gagcaaccgg cactgtgttg
     2701 accagtgcga ctgatgaaaa taccctgtgg gtgcaagtgg tgctgaataa agatgttgaa
     2761 cctaacacca agtttagagc caatggtgta gcgttggaaa tggtcgagtt accttatagt
     2821 ttggcagaaa atgagtaaaa cgaacggtca tcagggtatg accgtttttt tatatctgat
     2881 cagggtgatg aatcatcaca aaacgttccc acaactgctc ttcggtttcg atattatcag
     2941 gatctttgat aatgcagttg gtaatcgggc aaactttctg gcaagtcggc ttttcataat
     3001 gcccgacaca ttcggtacat aacaccggat cgatgatata aatatcatcg cccaccgaaa
     3061 tcgcctcgtt cgggcattcc ggcaagcaca tatcacagtt ggtacatttg tgggtaatta
     3121 ataaagccat agtttatatt gagaaaataa aaattaaaca agcggtcgat tttgcaaaaa
     3181 aatttgcaaa tcttaccgct tgtcactaaa tgctacctat tataaagcaa aataatttga
     3241 actacttcac atttttgcaa tttggttgtt tatccgatta agaaaatttt ttatgatgcc
     3301 atcgaaacgt ttcgatggag tattttccaa cgtgatggag cgaaaataaa ggggttagta
     3361 tgaaaaaaac gctaaatcta aatgcacaac tttcgcacag tattgcgaca ctcgggcata
     3421 ccgatagttt aacggtttgc gatgccggtt tgccgattcc aaacacaata gagcggatcg
     3481 atttggcttt aaccgccggt gtgccaagtt ttttacaaac atttgatgta gtagttagtg
     3541 aattatttgt tgaacgagtg ctacttgctg aagaaattaa acataaaaat ccgcaagtgt
     3601 tagcagctct tttggagcgt ttaacccaat tagaacaaac tcaacagaat aaaattcaaa
     3661 ttgattatgt gaaccacgaa atctttaaag agcagacaca ttacagtaaa gctgttgtgc
     3721 gttcgggtga gtgttcaccg tatgccaata ttattttata ttcgggcgtg ccgttttagg
     3781 gtggaatgat ggaaacctta ttaaaaatga gcgggataga taaagaattt cccggcgtga
     3841 aagccttgag caatgcgtgc ttatctgttt acggtgggcg agtaatggca ttaatgggcg
     3901 aaaatggggc aggtaaatcc accttgatga aagtattgac ggggatttat agcaaagatg
     3961 ccggctctat tagctattta ggcaaagaag ttacctttaa aggcccgaaa gattcacaag
     4021 aagccggtat tagcattatt caccaagagc tgaatttagt cggtaattta accattgctg
     4081 aaaatatttt tttgggccgt gagtccaaaa ccgcttgggg agctattgat tggaaaaaaa
     4141 tgtatgccga ggcggataaa ctgcttgccc gacttggggt aaaacacagt agccatcagc
     4201 tttgtgcgga gttatccatt ggcgagcagc aaatggtgga aattgcgaaa gccctgagtt
     4261 ttgagtctca agtaattatt atggacgaac cgaccgatgc tttaaccgat acagaaacag
     4321 catcgttgtt taaagttatt cgagagttaa aagcggaaaa tcgaggcatt gtttatattt
     4381 cccatcgttt aaaagagatt tttgaaattt gtgatgatgt gacggtgcta agagacgggc
     4441 aatttatcgg cgagcgagta attgccgata ttgatgaaga tcagttaatt gaaatgatgg
     4501 ttggtcgccg tttggaagag caatatccgc atttacacca agagcgtggc gagttattac
     4561 ttgaagtgaa gaatttaagt ggaagtgggg tgaataatgt gtcattccaa ttacacaaag
     4621 gtgaaattgt gggtatttcc ggcttaatgg gggcagggcg tacagaatta atgaaggtgc
     4681 tttatggtgc attgccgaaa acagccggct cgatagagtt aaatggaaaa gcgatttcca
     4741 accattgtcc gcaagatggg ttgaataacg gcattgtgta tatttcagaa gatcgtaaag
     4801 gcgatggtct gattttggga atgtcggtaa aagaaaatat gtctttgacc tctctcgatc
     4861 atttctccaa agccggcagt attcgccacg atgcagaaaa attggcggtc gatgatttta
     4921 ttgagatgtt taacattaaa accccaagtc gggagcaaca aatcgggctg ctttccggtg
     4981 gtaatcagca aaaagtggcg atcgctaaag ggttgatgac ccgcccgaat gtgctgattt
     5041 tagacgagcc gacacggggt gttgatgtgg gggcgaaaaa agagatctat caattaatta
     5101 atgaatttaa aaaagatggg cttagtattt tgatggtttc gtccgatatg ccggaagtgt
     5161 tgggaatgag cgaccgcatt ttagtgatgc acgaagggca aatcagtgca gaattttcac
     5221 gagcagaagc gacacaagaa aagctactgg cagcagctat tggcaaaagt acaggattaa
     5281 attaaggtgt gtttatggca actcaaacaa agcagtttca acttggcaga tttttaatcg
     5341 agcaacgttc ttttgtagcg ttatttattt taattgtcag tgtttcaatg attaaccctg
     5401 attttttcag cgtggataat attttaaata ttctacgcca aacctcggtg aatgcgatta
     5461 ttgcggtcgg aatgaccttt gtgattttaa ttgcaggcat tgatttatcg gtcggttcgg
     5521 ttttagcctt aaccggtgcg gttgcagcga ccttagtcgg ttctgaattg ccgattttgt
     5581 tggtgattcc gctggtttta ttattaggga cggcatttgg tggtattagt ggggcgattg
     5641 ttgctaaagg taaagtgcag gcatttattg cgactttggt cacaatgacc ttattgcgtg
     5701 ggattacgat ggtttatacc gatggcagac cgattagcac cggcttttct gaccaagcag
     5761 acgcctttgc gtttattggg acaggctatt tatttggtat tcctgtgccg atttggatta
     5821 tggcggtagt gtttgggtta gcttggtata ttttgaaaca caccccgatt gggcgttaca
     5881 tttacgcttt aggtggcaac gaatcggcaa cccagctttc aggcatcaat gtgaataaaa
     5941 ttaagatctt cgtatttgcc gtgagtggtt ttttatctgc tcttgccggc ttaattgtga
     6001 cttcacgtct ctcttctgct cagccaacgg caggtgtgtc ctatgagtta gacgcaattg
     6061 cagcggtagt tgttggtgga accagtctaa tgggcggtaa agggcgtgta atgggaacgc
     6121 ttgtcggggc attaattatc ggtttcttaa acaatgccct taatttattg gatatttctt
     6181 catattatca gatgattgct aaagcgttgg ttattttagc agctgtatta gctgataatt
     6241 atctaggcac taaaaaagtt taatctatct ttaaaggaga tttctatgaa aaaattaact
     6301 acgattgcat cagcggttat gttaagttta tcggttgcag ccactgcttc ggcaaaagag
     6361 actatcgctc ttgcagtatc gactttagat aacccattct ttgtgagcct taaagacggt
     6421 gcacagaaaa aagcagatga attaggctac aaattagtgg tgcttgattc ccaaaatgac
     6481 ccggctaaag agctttccaa tgtggaagac ttaacggtgc gtggggcaaa agtgttattg
     6541 attaacccaa ccgattcgga agcggtcgga aatgcggtgg ctattgcaaa tcgcaacaaa
     6601 attccggtta ttacacttga ccgtggtgca gcaaaaggcg aagtggttag ccatatcgct
     6661 tccgataacg ttgccggcgg caaaatggcg ggagatttca ttgctcagaa attaggctca
     6721 ggggcgaaag tgattcaatt agaaggcatt gccggcactt ccgccgctcg tgaacgtggt
     6781 gaaggcttta aacaagcgat tgaagcacat aaattcaatg tattagccag tcaaccggct
     6841 gattttgacc gcactaaagg cttaaatgtg actgaaaact tgctctcaag caaaggggac
     6901 gtacaagcta tttttgctca aaatgatgaa atggcactag gagctttgcg tgcagtgagt
     6961 tcagcgaaga aagaggttgt aattgtgggc tttgacggca cagatgatgg cgtaaaagcc
     7021 gttgaaagcg gtaaacttgc cgcaacgatt gctcaacaac ctgaactgat tggctcatta
     7081 ggcgtagaaa ctgccgataa agtgctaaaa ggcgaaaaag tggaagcaaa aattccggtt
     7141 gatttaaagg ttatttcaaa ataattatac ttgaagatag cgttcgtctc tgacgaacgc
     7201 tttgaattaa taaaatagca ctcgtcagag actagtgcta tcagaatcct agttttgttg
     7261 tactaggtaa tttgagggct taatatgaaa aaactcaccg ttctcggtag cattaacgct
     7321 gatcacgtga tttccgttcc ctattttgcc aaaccggggg aaacgctcac cggacatagc
     7381 tgccacattg cttatggcgg taaaggggca aatcaggcgg tggcggcagc acgtttggga
     7441 gctaaggttt ctttcatcgg ttgtattggc agtgatgaca tcggcaaagc aatgaaatca
     7501 gcctttgagc aagatggcat tgacactcgc tcgattaaaa cgattccgaa tgaaatgacc
     7561 ggcattgcaa tgattcaagt ggcggaatcg ggcgagaaca gtattgtgat ttcagccgga
     7621 gcgaacggtc atttggatga aacggttgtg gcaaagtgtg cagccgaaat cacacaggcg
     7681 gattatttgc taatgcagct agaaacaccg ttgccggcga ttgtgcaagc agcaaaattg
     7741 gctcagcaaa acggcacgaa agtaatatta aaccctgcgc ctgctcgagc gttacccgat
     7801 gaactgttaa acttactgga tatgattacc ccaaatgaaa cggaagcgga aatattaacc
     7861 ggtgtgaaag ttgttgatga agccagtgcg attcaagccg cacaagtgtt tcaccaaaag
     7921 ggcatcgaaa aagtgttgat tacacttggc tcaaaagggg tatttgtaag cgaaaacggt
     7981 gtaggcaaaa tcgttgcagg cttccgtgtt caagcggtgg ataccactgc cgcaggggat
     8041 acttttaacg gagcattagt gactgcaatg ttagaagata aaccgctgga tcaagccatt
     8101 cgttttgctc acgcagcggc agcgattagt gtgactcgca aaggggctca accttctatt
     8161 ccgacccgtc aggaaacact ggattttcta agccaacaag cggtgagttt ttaggaaaat
     8221 tttgcaaatg gcaacaatga aggatattgc acggcttgca caggtttcca cctcgaccgt
     8281 ttctcacgtt atcaacaata gccgatttgt cagcgaggaa attcgggaaa gagtgcagag
     8341 ggtggtgaaa gaactgaatt acacgccttc tgcattggct cgtagcctca aagtgaatga
     8401 aactaaaacc atcggaatgc tggtaacggc aaccggcaat ccgttttttg cggaggtgat
     8461 ggcgggggtg gagcaatatt gccagcaaca tcaatataac ctgattattg ccactaccaa
     8521 cggtgacacc gagcgtttgc aacaccattt gcaaatgctg atgcaacgaa aagtagatgg
     8581 cttgttactg atgtgtggcg ataccagatt gaatgccgat gagagcttga atattccgct
     8641 gccattggtg gtgttagact ggtggtttac cgagctcaat gcagataaaa tctttgaaaa
     8701 ttcaatatcc ggcggctatc tcgcaacaaa aaccttaatt gaagcagggc attctaagat
     8761 tgcgattatt actggaaacc taaaaaaatc attggcaaaa aatcgtttag aaggctacaa
     8821 aaaagcactt gccgaggcga atattccact caatccaaac tgggtgttcg aaagccattt
     8881 tgattttgcc ggcggggtta atggaatgaa tgctttgctt gcccaaagcg aaaagccgac
     8941 agcggtattt gcctgtagcg acaccattgc tctaggggct taccaagcaa tctggcaaca
     9001 aggtttacga ataccgcaag atatttcgat tatcggctat gacgatattg aactggcaaa
     9061 atacctttcc ccaccgctga gtaccattag ccagcccaaa gcggaactcg ggcggcttgc
     9121 ggtggaaact ttgctaaaac gaattcgttt taaatccact gattttcaaa ccataatgct
     9181 tgaacctgaa ttagttttaa ggcattcaat ccaaacaata aacaaaaacg ctgaataatg
     9241 tgaagttatt cagcgttttt tatccgattt caattagcct ttttgctgtt ccaaataaag
     9301 cacggtggcg gcaactcggg aatgcacgtt taatttacgc agtaaattgc ggatatgcac
     9361 ttttacggtt tcttcggaaa taaagagctg agccgcaatt tgtttgttcg acataccggt
     9421 tgcgagccat tgtaaaacat ccagttcacg atctgttaag caacttaaag gatcattttc
     9481 tggctggcgg ttgagtaaat gttggcgaac ggtttcgctt aataccactt caccggcagc
     9541 cgctttacgg atattatcta gtagttccgg ggtgtcggta tcttttaata aatagccgtc
     9601 cacaccagca tccattaatg caaatacatc ggattgctcg tctgacactg ttaaaacaat
     9661 gattctggca tctatacctt gagcgcgcaa tgagcgtaaa gtatctagcc ctgaaagccc
     9721 tttcatattt aaatccagaa taatcacatc cggctcaagt cgtaatgcaa gtttgatacc
     9781 gtcggtgccg ttgcttgctt cacccactac actaaattgg tgatctaatt ccaatagttg
     9841 acgcattccc tgacgcatta atgggtggtc gtcaatgagt aaaatttgag ttggagctgt
     9901 catttatttc tcctttcctt tctcttaatc ggttaatttt gcaattatta attcaaaata
     9961 gcaagtttag ggatttacta aatgccgctt ttttgatctt agctaatttt taactaaaaa
    10021 agaaattgca aaactttgca agaaaaagac cgcttgttcg gctataatta ctgccaattt
    10081 ttatttcaag tgtgaaaaga atgacaaatc aaacaaccta ttttgccacg gcagcccgtg
    10141 gttttgagga aatactaaaa accgaactgg agcagatttg tgcggcagaa tgcaaagtcg
    10201 ctcaaggcgg tgtgcatttt accaccacgc aaaaaggggc ttatcaggca ttattacaca
    10261 gccgtttagc ctctcggatc ttactgccgc tcatcagcac caaaattttt agtgatagcg
    10321 atttatatgc ttccatcgtg tcatttaact gggcggattt attcgatccc cgtgatacct
    10381 tttacattga tttcagcggc actaaccgag aaatccgcaa cacccaattt ggggcaatgc
    10441 gagtgaaaga cggcattgtg gattactttg aacgcaaagg ttttgcccgc ccaacagtag
    10501 ataaagataa tccggatgtt cgcattcatg tttatttgga tcgtgaaaat gttgtggttt
    10561 cgcttgattt aagtggagat gccttacata ttcggggcta tcgggaagaa accggtaaag
    10621 ctccgttgcg tgaaacattg gcggcagcca ttattttgcg ttccggctgg aaagtcggca
    10681 cgccattggt tgatccgatg tgtggttcag gcacgttact gattgaagca gcacaaatgg
    10741 cagcgaatat tgcccctcaa cttcaccgta aacattgggg ctttaatgcg tggaaagggc
    10801 atcaacaagc gatgtggaaa gccgtgttag atgaggcatt ccgaaatgtt gaattgggtg
    10861 cggtagggga gaattgcaat tcgtccctac aaaaaatgtt cttcggtttt gatctcgatc
    10921 atcgtgtgct gactaaagca aagcaaaatg cgaaaaatgc aggggtagat catctcattc
    10981 aatggcaaca aggtgatgtg gctgcgttaa aaaatccgat tccggaaaaa atcggcacgg
    11041 tggtgtgtaa ccccccttat ggtgaacgtt taggcacaac gccggcgtta attgctcttt
    11101 attcggtgtt cgggcaacgc ctaaaacagc aatttgccgg ttggaatgcc tcaattttta
    11161 gcggcgagcc tgaattgtta aattgcctgc gtttacgttc agcccgtcaa ttcaaagcga
    11221 aaaacggtcc gttggattgt gtgcagaaaa attactccat cagcgagcat aacaagcggt
    11281 cagatttaga tgaaaattta caatttgaac agaatgctca agtcgctccg gattttgcaa
    11341 atcgcttaac caaaaatatc aaaaagatcg aaaaatgggc gaaacaacaa ggcattgatg
    11401 cctaccgttt atacgatgcc gatctgcctg aatataattt agcggtggac agatatggcg
    11461 accacattgt tgtgcaggaa taccaagccc cgaaaaatat tgatgagcaa aaagcccgcc
    11521 aacgcttgtt agatgcagtc tctgctacgc tttatgtgac aggtgttgaa actaataaat
    11581 tagtgttgaa agttcgccaa aaacaaaaag gcacgaatca gtacgaaaaa cttgccaata
    11641 aaggcgagta tttctatgtg aacgagtatg gggcgaaact gtgggtgaat ttaaccgatt
    11701 acttggatac gggtttgttc ctagaccatc gcttaacccg taaaatggtg ggcgaaatgg
    11761 caaaaggcaa aacattcctg aatctgtttg cctacacggg ttcagctacg gttcacgctg
    11821 ctcttaatgg ggcaaaatcg accactacag tggatatgtc gaacacctat ttgaactggg
    11881 cggagcaaaa tttagagctg aataatttat cacttcgcca tcatcgtttg ttccaagccg
    11941 attgcttgca atggctggca gaatgccgtg agcgatttga gctgattttt gtcgatccgc
    12001 cgactttctc caactcaaaa cgaatggaaa acagttggga cgtgcaacga gaccatattg
    12061 agttaatgaa acagcttaaa cgtattttaa ccgctgatgg taccattgtg ttctcgaaca
    12121 ataagcgtgg ctttaaaatg gattttgacg gtttggcagc attaggctta acggcggaaa
    12181 atatttcgca taaaacctta ccgttggatt ttgaacgcaa tccgcaaatc cataattgtt
    12241 ggattgtgaa gaatgtatag ataataccct cgacccttgt gggagaggga tagatttttc
    12301 ttcgttcaga agaaaaatca gggagagggt aagaagttac tgatgaaaga gttatttccc
    12361 cctctctctg aaaaatattt ctgaacgaaa tatttttcgg tctctctccc acaaggggag
    12421 agagtaaggc taaaaaatgt tagatattgt tttatacgaa cctgaaattc cgcaaaacag
    12481 cggaaatatt atccgccttt gtgccaactg tggctttcgt ttgcatatga ttgaaccgtt
    12541 cggctttggt tgggacgata aaaagctccg ccgttcgggg ctggattatc acgaatttgt
    12601 ggatattcaa aaatataaaa attttgaaga tttccttgag cgtgctaagc ctaaacgctt
    12661 gttcgcctta accaccagag gggagcagaa ccacagtgat gtgaaatatg aacttggcga
    12721 ttttttaatg ttcgggccgg aaagcagagg cattccaaag ccattattag cggaaatgcc
    12781 gatgtcgcaa aaaatccgca ttccgatgtg caaagacagc cgcagtatga atttatctaa
    12841 ctcggtggcg gtggttgtgt atgaggcgtg gcgacaattc ggctaccaaa atgcggtagc
    12901 ggcacaatct atttaacttg caagcggtgt gattttggct attttttgca agtttgtggt
    12961 caaggttggg ggaggctcga ccttgactaa ttaagaacat ctattgtgtc tattcttctt
    13021 catttttagc tggaggtaaa aaattctctc cggtaacaac tgatttacct gttttattct
    13081 ccaattcctg acgggcattt ttggcaatat tgccaccttg ttttcctgct tgggcatttt
    13141 catcaacccc aactgcctgc atactttctg caatttgccg actggaaagt tcagcaagtg
    13201 ctgtaaataa caattcagct tcgctcatat gatctcgcag attttggctt tttaaacctt
    13261 taagcgattt atgcttttgt acagatagtc cgctccattc ttgatgaatc acattggtta
    13321 aaaatgcaaa atcttgtggc tgttcaaccc ctgacgattt ccaataatcg gtcagtttat
    13381 ttcgggtttc ttgtcccatc attctttgct gaatccattt ttcacttcgt cccatcttct
    13441 gccaattctc ccttgctcga tctagacttt gacttggatc gtttatttcc tgtaagcgtt
    13501 cataacctac ttttgctaac cattgtttga agggctctgc tttcggacta gggatagatt
    13561 gaataagtcg gaaaagttgt tcggtatctg ctacatcagt caaacgcatt tttccgtcag
    13621 cagagggcat tttcaacccg tgacaatttg tcacggtttc attgccttct gcctttagcc
    13681 tctgttttag cttacgccaa taagcagagg gatctaggct ttcggttaaa atagcaatca
    13741 catcaataat agaaaaatac catttatctt tttcttcatc gtaatgactg
//
LOCUS       DANLVT010000062        13599 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.062, whole genome shotgun sequence.
ACCESSION   DANLVT010000062 DANLVT010000000
VERSION     DANLVT010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13599
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.062"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            33..587
                     /gene="srlA"
                     /locus_tag="PXC99_001529"
     CDS             33..587
                     /gene="srlA"
                     /locus_tag="PXC99_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725059.1"
                     /note="catalyzes the phosphorylation of incoming sugar
                     substrates along with their translocation across the cell
                     membrane; the IIC domain forms the PTS system
                     translocation channel and contains the specific
                     substrate-binding site; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIC"
                     /protein_id="HDL5417980.1"
                     /translation="MIEAITHGAEWFIGLFQKGGETLVGMINGILPLLISLLVVMNAL
                     IKFVGQDRIERLAQRSAGNPISRYLILPVIGTFVFCNPMTLSLGRFLPERYKPSYYAA
                     ASYSCHSMNGLFPHINPGELFVYLGIASGLTTLGLPLGPLAISYLLVGMFTNFFRGWI
                     TDFTTAFFEKRMGITLDREVHLSH"
     gene            618..1619
                     /locus_tag="PXC99_001530"
     CDS             618..1619
                     /locus_tag="PXC99_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIB"
                     /protein_id="HDL5417981.1"
                     /translation="MSNKAIYIEKGNGGWGGPLTLPVVEGKKVLYMTGGTRPAIVNKL
                     VELTGWEAVDGFKEGEPPAEEIGIAIIDCGGVLRCGLYPKRRIPTINIHSTGKSGPLA
                     EFIVEDIYVSAVKENNIRLIDADGSVPVATEQAKPTSSTTATAKEYDSSKKITEQSDG
                     LLAKIGMGMGSVAALFFQAGRDTIDTVLKTILPFMAFVSALIGIIIASGLGDVIAHGL
                     TPLANSPIGLVTLALICSFPLLSPFLGPGAVIAQVIGVLVGTQIGLGNIPPHLALPAL
                     FAINAQAACDFIPVGLSMAEAKQDTVRVGVPSVLVSRFLTGAPTVLIAWAVSAFIYQ"
     gene            1664..2062
                     /gene="srlB"
                     /locus_tag="PXC99_001531"
                     /gene_synonym="gutB"
     CDS             1664..2062
                     /gene="srlB"
                     /locus_tag="PXC99_001531"
                     /gene_synonym="gutB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIA"
                     /protein_id="HDL5417982.1"
                     /translation="MHRLSKRENIYMTIIYQTTFTKIGNFAQESLTDDMLITFKQGAP
                     ADLQDYCFIHNPSELSSPLEVGDIAEFDGVAYPITAVGSVASENLSALGHITFRFDGA
                     NDAEFPGSVHVIGTPPQGLTENSTLIIKRD"
     gene            2110..2898
                     /gene="srlD"
                     /locus_tag="PXC99_001532"
     CDS             2110..2898
                     /gene="srlD"
                     /locus_tag="PXC99_001532"
                     /EC_number="1.1.1.140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sorbitol-6-phosphate dehydrogenase"
                     /protein_id="HDL5417983.1"
                     /translation="MNNEKKVAIVVGGGQTLGAFLSEGLADAGYRVVVADLNGENAQK
                     VAADINAKQGEGNAIGVQVDAADEPSVEALAKATDTVFGRADVLVYSAGTAKASPIWD
                     FNLNDFDLSVKVNLTGYFLTAKHFSRLMIRDGIKGRIIQINSKSGKVGSKYNSGYSAA
                     KFGGVGLTQSLALDLADKGITVHSLMLGNLLKSPMFQSLIPQYAAKLGIPESEVEQVY
                     IDKVPLKRGCDYQDVLNVLKFYAGEEAAYCTGQSINITGGQVMF"
     gene            3067..3447
                     /gene="gutM"
                     /locus_tag="PXC99_001533"
     CDS             3067..3447
                     /gene="gutM"
                     /locus_tag="PXC99_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GutM"
                     /protein_id="HDL5417984.1"
                     /translation="MDSITLLIILAMIMWLLQAVLGWLQIKAFNQAFMEISKKGKVTV
                     GRNSGRFNPKSVIVLAFDDEKKVVDSLCMKGFSVFARPQKLASVIGLSLDQIVPEKIF
                     PSDKRSQFALKVAISSGYSCSDQK"
     gene            3510..4157
                     /gene="hxpB"
                     /locus_tag="PXC99_001534"
     CDS             3510..4157
                     /gene="hxpB"
                     /locus_tag="PXC99_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HxpB"
                     /protein_id="HDL5417985.1"
                     /translation="MQINSVIFDMDGVMIDSEPQWAEAQIAVLADLGINITEQDCEQL
                     TRGKRIDELSDTWIKKFQLSVSNQALSEAILAHGCAAIEQHGKALTGLYELLDFLKSN
                     QIKLAVATSSPPVVIKAVFDRLKLWDYFPIRCSAMDEEYGKPHPAVYLSAVKKLGIEK
                     QECIVIEDSVTGLIAAKAANLTTFLVNTDYQNEKFSIADKRMASLLDVIEKLKQH"
     gene            4200..4997
                     /locus_tag="PXC99_001535"
     CDS             4200..4997
                     /locus_tag="PXC99_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor"
                     /protein_id="HDL5417986.1"
                     /translation="MKPFERRQQILAYLAQHGRTEVDVLADYFKLTGATIRKDLTSLE
                     EDKKVLRTYGSVVLIDEEILEREEKINKEDKDDKPLAQKTGINLQQKQAIGQKAAELI
                     NEGNSIIFDAGSTVLQMIPHLKAFDNLSLMTNSLTIFNEILKLNKSYNLLISGGTFRE
                     KSASFHGYFAESAFIGSNFDILFIGTDGLDLDVGLTTFNEVYKVSSLMCDAANKIVLL
                     ADSSKFGRKSPNIVCGLEKIHTIITDEGLSQEMREQIKAKGIELLVV"
     gene            5008..5943
                     /locus_tag="PXC99_001536"
     CDS             5008..5943
                     /locus_tag="PXC99_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HDL5417987.1"
                     /translation="MNHLDSAKETLNLYAQQIITLNHRLSEEFNEVVNMILACQGRVV
                     VGGIGKSGLVGKKMVATFASTGTPSFFLHPTEAFHGDLGMLKPIDMVILISNSGETDD
                     VNKLIPSLKNFGNKIIAMTGNPYSTLGRNADVILNIGVEREACLNNLAPTSSTLVTMA
                     LGDALAIALMKARDFRPEDFARYHPGGSLGRKLLNRVRDVMVRKVPTASLDTTFTECL
                     SVMNEGRMGVAVIMQDDKLEGIITDGDIRRTLAKFGAESLNKTADEIMTRNPKTINDT
                     EFLAKAEDLMKELKIHSLIAVNDEGKVTGLMEFSS"
     gene            complement(5987..6537)
                     /locus_tag="PXC99_001537"
                     /pseudo
     CDS             complement(5987..6537)
                     /locus_tag="PXC99_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005752768.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            6839..8698
                     /locus_tag="PXC99_001538"
     CDS             6839..8698
                     /locus_tag="PXC99_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICBA"
                     /protein_id="HDL5417988.1"
                     /translation="MSNLKVKVQGFGRFLSNMVMPNIGAFIAWGFITALFIPTGWLPN
                     ETFAKLVGPMITYLLPLLIGYSGGKLVGGERGAVVGAITTMGIIVGSEIPMFLGAMIV
                     GPLGGWAIKTFDKAIDGKVKSGFEMLVNNFSVGIIGMILAMLSFAFIGGIVTQISAAL
                     GAGVGALVEAGLLPVTSIIVEPAKILFLNNAINHGVFTPLGTAQAQEVGKSILFLIEA
                     NPGPGFGILLAYMFFGRGTAKQTAGSASIIHFLGGIHEIYFPYVLMSPRLILAVIAGG
                     ATGVLTNSLLGGGLIAPASPGSIFAILAMTAPGAHFAVVASVILSCAVTFAIASILLK
                     TQKGEASLEDAQAQTQAMKAESKGVVNGNINKIYVACDAGMGSSAMGASMLRKKVQAA
                     GLNIEVQNLAINDLPQDAQLVITHKDLTARATQRVATAQHLSLTNFLDSAFYDSLVAK
                     LANHQPQQAVQNTQNFANPVEEPQAEGLKLQAAQVFLGLQANSKEEAIRFAGEQLVKA
                     GFVQPSYVDAMFAREQMVSTYLGEGLAVPHGTSDAKDSVLKTGIVVCQYPNGVRFTDE
                     EDGVAKLVVGIAAKGNDHIQILSAITNALDDEQAMKTLTSTNDVEKVLALLSK"
     gene            8802..9941
                     /locus_tag="PXC99_001539"
     CDS             8802..9941
                     /locus_tag="PXC99_001539"
                     /EC_number="1.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005557909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HDL5417989.1"
                     /translation="MNALHFGAGNIGRGFIGKLLADARIFVTFADINQTQIDQINQNK
                     QYGVKIVGDDSRVEIVKNIAAINSKDENAVIEQVKNTDLITTAVGPNVLGFIAPLFAK
                     ALVARVESGNTQPLNIIACENMVRGTTFFKGKIFEHLTAEQQAEIEKVVGFVDSAVDR
                     IVPPAEPNPADPLEVTVEEFSEWIVDQTQFKGDIPNIKGMELTDNLMAFVERKLFTLN
                     TGHLICAYLGKQAGVKWIKEAIAIEEIKTQVKATMEESGAVLIKRYGFDPQAHSAYIE
                     KILKRFANPYLNDDVNRVGREPIRKLSENDRLIKPLRGTLEYGLPYQNLVKGVVMALQ
                     YRNEEDPQAVELAEFIANHGVAAAVEKYTGLTDQAVIAQVVELYQ"
     gene            9953..10468
                     /locus_tag="PXC99_001540"
     CDS             9953..10468
                     /locus_tag="PXC99_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MltR family transcriptional regulator"
                     /protein_id="HDL5417990.1"
                     /translation="MMDYIDKLSEETTLRGFLSIANQRFAKAVEQLIERVFRKTDFAL
                     KSVVDSLFEHQGPLADIEVRLKVLLGLGVISPKVFEDISLFLEVKQHLNEEEDEFAFS
                     HPAVVKFAKDLHHIDFLPINELLNMKASAANKDSMLFQMQQMRLEKMVRSSLILAVTE
                     IDEQLNVESPL"
     gene            10608..12473
                     /locus_tag="PXC99_001541"
     CDS             10608..12473
                     /locus_tag="PXC99_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HDL5417991.1"
                     /translation="MQSLLSFVPDFLKQELFWVMALLVFAIWQFIQNKLRMDVVALIV
                     MLFFSLTNILSVKEVLAGLSDPNVVLIALLFIVGEGLVRTGVANQVSDWLMRVSGASE
                     TKVLVLLMLCIAGLGSFMSSTGIVAIFIPVVLAICSGMGISPRRLMMPLSVAGLISGM
                     MTLIATPPNLVAHSELVKSGFEGFNFFSFTPIGLIILVMGIGYMLIARRWLDNGEQSN
                     THSQAQKFSMSQLIEEYQLKERAKMVLVEADSDCVGKSIGQLNLRIEQGLNIIAIQRT
                     KRFRKITVSASVNEIFQPKDILLLDTALDDETYQQRCEQLKLRPIELKGEYFSSQYRS
                     VGMAEISVMPEAECIGKTIRELKFRSRYHLSIVGLKRGDEIIQEELLDTPLKFGDILL
                     VMGVWQQIHRMDDDHRDFFLLRDPAESKNAPPALSQAPHALFSVLTMVLLMITGIVPN
                     VMAALIACLMLGKFRCVDMKSAYDSIHMPSIVLIVGMMPFSIALQKTGGVDLTVRLLL
                     DAMQGLDVHFVLIVLFVVTAIISAFISNTATAILVMPIAIAIANQLGYSPAPFVMTVA
                     VSASAAFMTPVSSPVNTMVLAPAGYKFIDFVKVGVPFTVLVMLVSVFVIPMLFPL"
     gene            complement(12763..13014)
                     /locus_tag="PXC99_001542"
     CDS             complement(12763..13014)
                     /locus_tag="PXC99_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5417992.1"
                     /translation="MDKQAILKLFRDNSTAGNSQPSQEPIQVFNNSNVIIQNGDNATV
                     IAGCTVDNNTNLTCADKQRVHDLIHSLEQRNRASRDEGA"
     gene            complement(13026..13508)
                     /locus_tag="PXC99_001543"
     CDS             complement(13026..13508)
                     /locus_tag="PXC99_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5417993.1"
                     /translation="MKIECKKVIGFGNRIEQSRKNAKLSRSEVCDALGGIAISTLQAW
                     EADTREPPISKLMALSQILNVEPCYLLTGERHSQSLNVTREPQPVYATKPQTEEGEVV
                     VIKAKLQEAIETLEEVLEITQREMKPAGKAQMVWAFYELLTQEKSEKEKMVGLLKLVA
                     "
BASE COUNT         3857 a         2652 c         3102 g         3988 t
ORIGIN      
        1 aaaatatttt attttgaaaa acggagatcg gtatgattga agcaattaca cacggagcag
       61 aatggtttat cggcctgttc caaaaaggcg gtgaaacctt agtcggtatg ataaacggta
      121 ttttgccact cttaatttca ttattggttg taatgaatgc cctgattaaa tttgtagggc
      181 aagatcggat tgaacgactt gctcaacgta gtgccggaaa ccctatttca cgttatttga
      241 tcttaccggt gatcggcact ttcgttttct gtaacccgat gacattaagc ttagggcgtt
      301 tcttaccgga gcgttacaaa ccaagctact acgccgcagc ctcttatagt tgccactcta
      361 tgaacggctt attccctcac atcaacccgg gtgaattatt cgtttattta ggtattgcca
      421 gcggtttaac caccttaggc ttaccacttg ggcctttagc catcagttat ttattagtcg
      481 gtatgtttac caatttcttc cgtggctgga taacagactt caccaccgca ttctttgaaa
      541 aacgaatggg gatcacctta gatagagaag tacatttatc ccactaacca agtaactgaa
      601 atacagagga atagattatg agcaacaaag cgatttacat tgaaaaaggc aacggtggtt
      661 ggggtggtcc attaacatta cctgttgtgg aaggcaaaaa agtgctttat atgaccggcg
      721 gcactcgccc tgcgattgtt aataaattgg tggaattaac cggctgggaa gcggttgatg
      781 gttttaaaga aggcgaaccg ccggcagaag aaatcgggat tgcgattatt gattgcggtg
      841 gggtattacg ctgtgggctt tacccaaaac gccgtattcc aaccattaac attcactcca
      901 ccggtaaatc cggcccttta gcagaattta ttgtggaaga tatttatgtt tcagcggtga
      961 aagaaaacaa tattcgctta attgatgccg atggaagtgt gcctgtggca acagagcaag
     1021 caaaaccaac ttcatcaacg acagcaacgg caaaagagta tgactccagc aaaaaaatca
     1081 ccgaacaaag tgatggttta ttagcaaaaa tcggtatggg aatgggatcg gtggcggcgt
     1141 tattcttcca agccggacga gacactattg atacggtgct taaaaccatt ttaccgttta
     1201 tggcatttgt ttctgcgtta atcgggatca tcattgcgtc aggtttaggt gatgtgattg
     1261 cccacggctt gacccctctg gcaaacagcc caatcggttt agttacactg gcgttgattt
     1321 gttccttccc tctcctttcc ccattcttag ggccgggagc cgtgattgca caagttatcg
     1381 gcgtgttagt cggtacgcaa atcggtttag gcaatattcc gccacattta gcactgccgg
     1441 cactctttgc tattaatgct caagccgctt gtgattttat tcctgtgggt ctttcaatgg
     1501 cggaagcaaa acaagatacc gtacgggtgg gtgtaccgtc agtattagtc agccgttttt
     1561 taaccggtgc accgaccgtg ctgattgcgt gggcagtttc cgcattcatc taccaataat
     1621 taaccacgat acaagcggtg gaatttgaaa aattttttgc aaaatgcacc gcttgtcaaa
     1681 acgagagaac atttatatga cgattattta tcaaacgacc tttaccaaaa tcgggaattt
     1741 tgctcaggaa tcattaacag acgatatgtt aatcactttt aaacaaggcg caccggcaga
     1801 tttacaagat tactgcttca ttcataatcc atctgaatta agtagccctt tagaagtagg
     1861 cgatatcgct gaatttgatg gcgtagctta tccgattacg gcagttggta gcgttgcatc
     1921 tgaaaactta tccgccctcg gacacattac cttccgtttt gacggggcaa atgatgcgga
     1981 atttccggga agcgttcacg ttatcggaac accgccgcaa ggcttaacag agaactcaac
     2041 cttgattatc aagcgtgatt aatgacggat taaaaataat ttcaaattga aaatttagag
     2101 gaatacatta tgaacaatga aaaaaaagtt gctatcgttg ttggcggcgg tcaaacactt
     2161 ggagcttttt tatctgaagg cttggcagat gccggttatc gtgtggtggt tgctgactta
     2221 aacggcgaaa atgcacaaaa agtggcagcc gacattaatg ccaaacaagg cgaaggaaat
     2281 gcgattgggg tgcaagtcga tgcggctgat gaaccaagcg ttgaagcact agctaaagca
     2341 acagataccg tattcgggcg tgccgatgta ttggtttaca gtgcaggcac agcgaaagca
     2401 tcgcctattt gggatttcaa cttaaacgat tttgatttgt cggtaaaagt gaatttaacc
     2461 ggttatttct taaccgcaaa acacttctcc cgcttaatga ttcgtgacgg tattaaaggg
     2521 cgtatcattc aaattaattc taaatcgggt aaagtaggga gtaagtataa ttccggttat
     2581 agtgcagcga aatttggtgg tgttggttta acacaatcgt tagcattaga cttggcagat
     2641 aaaggcatta ccgtgcattc attaatgtta ggcaatttat tgaaatcgcc gatgttccaa
     2701 tcgttaattc cgcaatatgc ggcaaaactc ggcattccgg aaagcgaagt agagcaagtt
     2761 tatattgata aagtgccttt aaaacgtggc tgtgattatc aagatgtgtt gaatgtctta
     2821 aaattctatg ccggcgaaga ggcagcttat tgcacaggac agtctattaa tattaccggt
     2881 ggtcaggtaa tgttctaagc aaacaagcgg tcaaatttgt cgattttttt acaacaattt
     2941 gcaaaaaatg actaaaataa accgcttgtt aattcgccac accggttaat atgccacagg
     3001 ggaaagcgta ttgttttgaa atcgcaggta cgtttaggct ctgtggcttt ttattaagga
     3061 gcaatgatgg attcaattac acttctgatt atattggcaa tgataatgtg gctgttacaa
     3121 gccgttttgg gttggcttca aattaaagcc tttaaccaag cctttatgga aatcagtaag
     3181 aaaggcaaag taacggttgg gcgtaatagt ggtcgtttta atcctaaatc ggttattgtg
     3241 ttggcgtttg atgatgagaa aaaagtggta gatagccttt gtatgaaagg attttccgtc
     3301 tttgccagac cgcagaaatt agcgtctgtg attggtttgt ctcttgatca aattgtgccg
     3361 gaaaaaatct ttccaagcga taaacgttca caatttgcct taaaagtggc gatatcttcc
     3421 ggatatagtt gctcagatca aaaataatgc gattttttat ttcattttga atattttttt
     3481 agttaaaaat gagataatgg agaataaata tgcagatcaa tagtgtcatc tttgatatgg
     3541 acggggtaat gattgattca gaaccccaat gggcagaggc tcaaattgca gtattagccg
     3601 acttaggtat taatatcacc gagcaagatt gcgaacaact caccagaggt aagcggattg
     3661 atgagttgag cgacacttgg attaaaaaat ttcagttatc tgtttccaac caagcattaa
     3721 gtgaagccat tttggcacac ggttgtgctg cgattgaaca acacggcaaa gcattaacgg
     3781 gtttatatga attattggat ttcttaaaat ctaatcagat caagttagcc gttgcaacct
     3841 catcgccgcc ggtggtgatt aaagcggtgt ttgatcgctt aaaactgtgg gattatttcc
     3901 cgattcgatg cagtgcaatg gacgaagaat atggcaagcc acaccctgcg gtctatttga
     3961 gtgcagtgaa aaaattaggc attgaaaaac aagagtgtat tgttattgag gacagtgtaa
     4021 ccggcttaat tgccgccaaa gccgctaatt taactacatt tttggtgaat accgattatc
     4081 aaaatgaaaa attttcaatt gccgataaaa gaatggcatc gctactagat gtcattgaaa
     4141 aattaaaaca gcattagcac agattagctc gctccaatct ttgctaaatt ggaggaacaa
     4201 tgaaaccttt tgaaagaaga cagcaaattt tagcctattt agctcagcac ggtagaaccg
     4261 aagtggacgt gctggcagac tattttaagc taactggtgc aaccattcgt aaagatttaa
     4321 cttcacttga agaagataag aaagtcttgc gtacttatgg cagtgtagtc ttaattgatg
     4381 aagaaattct tgaacgggaa gagaaaatca ataaagagga caaagacgat aaaccgcttg
     4441 cacagaaaac cggcattaat cttcaacaaa agcaagctat cgggcaaaaa gctgcagagt
     4501 taattaatga gggaaactct attatttttg atgcaggcag cacagtgtta caaatgattc
     4561 cccatttaaa agcatttgat aacctctctt taatgacaaa tagtttaact attttcaatg
     4621 agattttgaa actcaataaa tcctataact tactgatttc cggtggtaca tttcgtgaga
     4681 aatcagcttc atttcacggt tattttgctg aatccgcttt tattggttca aattttgaca
     4741 tactctttat tggcacagac ggactagatt tagacgttgg attaacgact ttcaatgaag
     4801 tatataaagt cagttcgcta atgtgtgatg cggcaaataa aatcgtctta cttgccgact
     4861 ccagtaagtt tggacgtaaa agtccgaata ttgtgtgtgg gttagaaaaa attcatacta
     4921 tcattaccga tgaaggatta tctcaagaaa tgagagaaca gattaaagcg aaagggattg
     4981 agctgttagt tgtataaggg cgtaaaaatg aatcatttag acagtgcaaa agaaacgtta
     5041 aacctctatg ctcagcagat tatcacgcta aaccatcgac tttctgaaga atttaatgag
     5101 gtggtaaata tgatactcgc ttgtcaaggg cgagtggttg ttggcggtat tggaaaatcg
     5161 gggctggttg gcaaaaaaat ggtggcaact tttgcctcca ccggtacacc gagctttttc
     5221 ttgcacccga cagaggcttt tcacggcgat ttgggaatgc tgaaaccgat tgatatggta
     5281 attctgattt ctaacagtgg tgaaactgat gatgtgaata aactgattcc aagcctgaaa
     5341 aatttcggca ataaaattat tgcgatgaca ggtaatcctt actccacact tgggcgaaat
     5401 gccgatgtga ttttaaatat tggtgtagag cgtgaagcct gcctgaataa tctagctcca
     5461 accagctcta ctttggtaac gatggcttta ggcgatgcgt tagccattgc gctaatgaaa
     5521 gcccgtgatt tccgccctga agattttgcc cgctaccacc cgggtggcag tcttggtcgt
     5581 aaattattga acagagtgcg agatgtgatg gtgcgtaaag tgccaaccgc cagcttagac
     5641 accaccttta ccgaatgttt atctgtgatg aacgaagggc gtatgggggt ggcggtaatt
     5701 atgcaagacg ataaattgga aggcattatt accgatggtg atatccgccg cacattagcg
     5761 aaattcgggg cggagagcct aaataaaacc gctgacgaaa ttatgacccg taatccaaaa
     5821 accattaacg ataccgaatt tttagccaaa gccgaagatt taatgaaaga gctgaaaatt
     5881 cactcattaa ttgcagtgaa tgatgagggt aaagtaacgg gattgatgga gttctctagt
     5941 taatttatag atgtaacgat ggcgcaagcg tttacgcttg tgccgttcac tgacatatat
     6001 caatatctaa taaaacaggt aagttgttag cataatttct tgcactgcta tatttccatt
     6061 caaatgcctc gcatacaaaa ccgcttacga tagggttgtt gtgaatatgg tttagctttt
     6121 catcaaaaaa tttctgagaa tagattgtta tcggttggtt atgatgttgc caaagttggt
     6181 attgcttgac attatttcgt tgtttagctg cccgagtaaa catccataat aaccattctt
     6241 ttctactttc ttggggattt gttttaattt gctgaatcaa catttagatg taaatgtttt
     6301 aaaatctctt attaaatctg acgggttttg gtcttttgct tgaaataata aatgaatatg
     6361 gcttggcata atgcagtagc catataaaat catccctttt tgttttcgac aataattcaa
     6421 tgattggata atggtttgaa aataatcttc tcgaataaat agatcaatcc aataaactgt
     6481 tgcaaaacta acaaaatagg ctccgctctt ctcataaaac ttatattttc tactcattat
     6541 gaacctctaa agtgcagttt atgctgatag taatataggt gaacagttag ggttagcaat
     6601 tcattttatt ttttcgatgt agatcgcaaa aatagaatta tgcttggcac aagcgaggac
     6661 gcttacgcca tctttactcc aaaaatgtga gatagatcac attttcaaat ctgcccaaaa
     6721 aaatttaatg tgatctactt cacatttctg agagaaacat ttttgtaact tttgaaagtg
     6781 gtgctaattt aagcacgatt ttttcaaccc taattttctc tccttttttg aggtttctat
     6841 gtctaattta aaagtgaaag tccaaggttt tgggcgtttc ttatcgaata tggtgatgcc
     6901 gaatatcggt gcctttattg cgtggggctt tatcaccgcc ctgtttattc caaccggttg
     6961 gttgccgaac gagacttttg ctaaactggt cggtccgatg attacttact tgctgccact
     7021 gttaatcggt tacagcggtg gtaaattagt cggtggtgag cgtggtgcgg ttgtaggtgc
     7081 gattactaca atgggtatta tcgtgggttc tgaaatcccg atgttcttag gtgcgatgat
     7141 tgtaggtcca ttaggcggct gggcgatcaa aaccttcgat aaagcgattg acggcaaagt
     7201 aaaaagcggt tttgagatgt tggtaaacaa cttctcggtc gggatcatcg gtatgatttt
     7261 ggcaatgctt tcatttgctt tcattggagg tatcgtcacc caaatctctg cggcattagg
     7321 tgcaggtgtg ggggcgttgg ttgaagctgg tcttctgcca gtaacctcta tcatcgttga
     7381 accggcgaaa atcctattct taaacaatgc gatcaatcac ggtgtgttca cgccattggg
     7441 tacagcacaa gcacaagaag tgggcaaatc tattctgttc ttgattgaag cgaacccggg
     7501 tccgggcttt ggtatcttgc ttgcctatat gttctttggt cgtggcacag caaaacaaac
     7561 cgctggtagt gcgtcaatca ttcacttctt aggcggtatt cacgaaattt atttcccgta
     7621 tgtgttaatg agcccacgct taattcttgc agtgattgca ggcggtgcaa ccggcgtttt
     7681 aaccaactca ttattaggtg gcggtttaat cgcaccggct tccccgggtt ctatttttgc
     7741 gattttagca atgaccgcac cgggtgctca ctttgcagtt gttgcctccg tgattctttc
     7801 ttgtgccgtg acttttgcga ttgcgtcaat cttactcaaa acccaaaaag gtgaagcctc
     7861 attggaagat gcacaagcac aaactcaagc gatgaaagca gaaagcaaag gcgtagtaaa
     7921 tggtaacatc aacaaaatct atgtagcgtg tgatgccggt atgggttcaa gtgcgatggg
     7981 tgcgagtatg ttacgcaaaa aagtgcaagc ggcaggttta aacattgaag tacaaaactt
     8041 agcgatcaac gacttaccgc aagacgcaca actggtgatt acccacaaag acttaaccgc
     8101 tcgtgcaaca caacgtgtgg caacggctca acacttatcg ctcactaact tcttagacag
     8161 tgcgttctat gacagcttag tggcaaaact ggctaaccac cagccacaac aagcggtgca
     8221 aaatacacaa aattttgcaa acccggtgga agaacctcaa gccgaagggt taaaattgca
     8281 agcagcccaa gtctttttag gcttacaagc taacagtaaa gaagaagcga tccgctttgc
     8341 cggtgagcag ttagttaaag cgggctttgt tcaaccaagc tatgtagatg caatgttcgc
     8401 ccgtgagcaa atggtttcaa cttacttagg cgaaggctta gctgtgccac acggtacatc
     8461 tgatgccaaa gacagcgtac tgaaaaccgg tatcgtggtc tgccaatacc cgaacggcgt
     8521 tcgcttcacc gatgaagaag acggcgtggc gaaactggtg gtcggtattg cagcaaaagg
     8581 caacgaccat atccaaattt taagtgcaat taccaacgca ctggacgatg aacaagcaat
     8641 gaaaacactg acctcaacaa atgacgtgga aaaagtgtta gcattattat ctaaataatc
     8701 accctgttgt gtaggggcgg gtcctgtgcc cgcccattat cctacaaaat ttagggcggg
     8761 cacaggaccc gcccctacgt tttatagagg aacaatcatc aatgaacgca ctccattttg
     8821 gtgccggtaa tatcgggcgt ggctttatcg gcaaattgct tgctgatgct cgcattttcg
     8881 tgacttttgc cgatattaac caaactcaaa tcgaccaaat caaccaaaac aagcaatacg
     8941 gcgtgaaaat cgtgggcgat gacagccgtg tggaaattgt caaaaacatt gcggcaatta
     9001 actcgaaaga cgaaaatgcc gtgattgagc aagtgaaaaa caccgattta attaccaccg
     9061 cagtcggccc gaatgtgctt ggctttattg ccccactgtt cgccaaagcg ttagtggctc
     9121 gtgtggaaag tggcaacacc caaccgctga acattatcgc ctgtgaaaat atggtgcgtg
     9181 gcacaacttt ctttaaaggt aaaatttttg agcatttaac tgccgagcag caagcagaaa
     9241 ttgaaaaagt ggttggtttt gttgatagtg cggtggacag aattgtacca cctgccgagc
     9301 cgaaccctgc tgatccgttg gaagtcacgg tggaagagtt cagcgagtgg attgtggatc
     9361 aaacccagtt caaaggtgac attccaaaca tcaaaggaat ggaattaacc gataacctga
     9421 tggcgtttgt ggaacgcaaa ctgttcaccc tgaacaccgg gcatttaatc tgtgcctact
     9481 tgggcaaaca agcgggcgtg aaatggatta aagaggcgat tgcgattgag gaaatcaaaa
     9541 ctcaggtgaa agccacaatg gaagagagcg gtgctgtgct gattaaacgt tacggcttcg
     9601 acccacaagc ccattcagcg tatatcgaaa aaatcctcaa acgttttgcc aacccgtact
     9661 taaacgatga cgtaaaccgt gtagggcgtg agccaatccg caaactgagc gaaaacgacc
     9721 gcttgatcaa accgttgcgt ggcacgttgg aatatggctt accgtatcaa aacttggtca
     9781 aaggcgtggt gatggcattg caatatcgca atgaggaaga cccacaagcg gtcgaacttg
     9841 ccgaatttat tgcaaatcac ggtgtggcgg cagcggtgga aaaatacacc ggtttaaccg
     9901 accaagcggt cattgctcaa gtggtggaat tatatcaata attcttgaca ctatgatgga
     9961 ttacatcgac aaactcagtg aggaaaccac cctgcgtggt ttccttagca ttgccaatca
    10021 acgctttgcc aaagcggttg aacagttgat tgaacgagtg tttcgcaaaa cggactttgc
    10081 gttaaaatcc gtggtggatt ccttgtttga acatcaagga ccgctggctg acattgaagt
    10141 acgtttaaaa gtgttgcttg ggttgggggt gatctcacct aaagtgtttg aagatatctc
    10201 gcttttcctt gaagtcaaac agcatttgaa tgaggaagaa gacgagttcg cattttctca
    10261 cccggcggta gtgaaatttg ccaaagattt gcaccatatt gattttttgc ctatcaatga
    10321 attgctgaat atgaaagcga gtgcagcgaa taaagattcg atgctctttc aaatgcagca
    10381 aatgcggttg gaaaaaatgg tacgttcaag cctgattttg gcggtaactg aaattgacga
    10441 acaactgaat gtggaaagcc cattgtaaaa atttcgtcaa aactaaccgc ttgtactgag
    10501 cattcacgcc gtacgtgatt gctttttcct ttctttttga tcttatcggc ttttttcttt
    10561 gcttaaagcg gtgtaatcta tccctaacta ttttggagga tatggttatg caatcgttgc
    10621 tctcttttgt gccggatttt cttaagcaag aactgttttg ggtaatggcg ttattggtat
    10681 ttgcgatttg gcaatttatc caaaacaagt tgcgtatgga cgtggttgcc ttaattgtaa
    10741 tgctgttttt tagcctgact aatattttat cagtcaaaga agtgttggca ggcttaagtg
    10801 acccaaacgt ggtgctgatt gcgttgctct ttattgtcgg agaaggtttg gtgcgaaccg
    10861 gcgtggcgaa ccaagtcagc gattggttga tgcgggtgtc gggagcgagc gaaaccaaag
    10921 tgctggtgct gctaatgctc tgtattgccg ggcttggatc ttttatgagt tccaccggca
    10981 ttgtggcgat tttcattccg gtggtgcttg ccatttgctc gggaatggga atttctcctc
    11041 gccggttaat gatgccgtta agtgttgccg gacttatcag cggtatgatg accttaattg
    11101 ccacaccacc caaccttgtt gctcattccg aattagtaaa atcaggtttt gaaggcttca
    11161 atttcttcag ttttactccg attggattaa ttattttagt gatgggcatc ggctatatgc
    11221 tgattgcccg ccgttggttg gataatggtg agcaaagcaa tactcacagt caggctcaaa
    11281 aattttcaat gtcgcagtta attgaagagt atcaacttaa agagcgagcc aaaatggtgc
    11341 tggtggaagc agattcagac tgtgtcggca aatctatcgg gcaactgaat ttacggattg
    11401 agcaagggct aaacatcatt gcaattcaac gcactaagcg gtttagaaaa attaccgtca
    11461 gtgcctcggt aaacgaaatt ttccagccga aagatatttt actgcttgat actgccctcg
    11521 atgatgaaac ttaccaacaa cgctgtgaac agctcaaact tcgcccgatt gagctaaaag
    11581 gcgaatactt ttcctcacaa tatcgctcgg tgggtatggc ggaaatttcg gttatgcctg
    11641 aagcagaatg tatcggtaaa actattcggg aactcaaatt ccgctcaaga taccatttaa
    11701 gcattgtcgg cttaaaacgt ggtgatgaaa tcatacaaga ggaactgctc gatacgccac
    11761 tcaaattcgg cgatatttta ttggtgatgg gcgtatggca acaaattcac cgtatggacg
    11821 acgatcatcg agatttcttc ttgcttagag atccggcaga aagtaaaaac gcccctccgg
    11881 cgttaagcca agcccctcac gctctgttct cagtgctgac tatggtgttg ctgatgatta
    11941 ccggcattgt gccaaacgtg atggcagcgt tgattgcctg cttaatgtta ggcaagttcc
    12001 gctgtgtgga tatgaaaagt gcttatgatt cgattcatat gccaagcatt gtgttgattg
    12061 tggggatgat gccgttttct attgccttac aaaaaaccgg tggtgtggat ttaaccgtta
    12121 ggcttctact tgatgcaatg caaggcttag atgtacattt tgttctaata gtattatttg
    12181 tagtaacagc gattatcagt gcttttattt ccaacacagc gactgcaatt ttggttatgc
    12241 cgatagccat tgcgattgct aaccaacttg gctactcacc ggcacctttt gtgatgacgg
    12301 tcgctgtttc agcctccgcc gcttttatga cgccggtttc ttcaccggta aatacgatgg
    12361 tattagcacc ggcaggctat aaatttattg atttcgttaa agttggtgtg ccgtttactg
    12421 tactggtgat gctggtgtcg gtgtttgtga ttccgatgtt atttccgctc taaacactcc
    12481 tctaaattac aagcggtcat ttttggtaat ctgacgttga cggtaaaatt gttgagtatg
    12541 tctggcaaca tagtgtgggg tactgatctt ttttgcatag agagaaagaa aaaaatttgg
    12601 gcggaaaaat aacggcgagg ctaggaaata caaggcttcg ccgtttttgt ttggggtgag
    12661 ttatgcaaaa aacgaaaatg agcaaaaata gaaaaaaatg ggctattttt acgttatttt
    12721 ttgcataggt ctgagcaggt ttaaacggat tttaaaacaa ttttaagcgc cctcatctcg
    12781 gctggctcgg ttgcgttgct ctaagctgtg aatgaggtcg tgtacacgtt gtttatcggc
    12841 acaggttagg ttggtgttat tatccaccgt gcagccggca atcaccgtgg cgttatcgcc
    12901 gttttgaatg atgacgttgc tgttattaaa cacctgtata ggctcttggc ttggctggct
    12961 gttgccggca gtgctattgt ctctgaataa tttgagaatg gcttgtttgt ccatattgtc
    13021 ccctgttatg ccaccagttt gagtaatccc accatttttt ctttttcgct tttttcttgc
    13081 gtgagaagct cgtagaaagc ccacaccatt tgggcttttc cggcaggctt catttcccgt
    13141 tgggtaattt ccagcacctc ttccaacgtt tctattgcct cttgtaactt agctttgata
    13201 acaactactt ccccttcttc tgtctgcggt tttgtggcat acacaggctg tggctctctt
    13261 gtgacattaa ggctttgcga gtgtcgctca cctgttaata ggtagcaagg ctcaacgtta
    13321 agtatttgtg acaaagccat aagttttgat ataggaggtt ctcttgtatc agcctcccac
    13381 gcttgtaatg tagatattgc aatacctcct agggcatcac aaacctcaga tctacttaat
    13441 tttgcatttt ttctgctctg ttctattcgg ttaccgaaac caataacctt tttacactct
    13501 attttcataa ctgtaaaaaa ataagttgag atttttagcc ttttacactc taaaaaccta
    13561 taaataaatc aataacttac agcaaactaa gtttatttg
//
LOCUS       DANLVT010000063        13504 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.063, whole genome shotgun sequence.
ACCESSION   DANLVT010000063 DANLVT010000000
VERSION     DANLVT010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13504)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13504)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13504
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.063"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            502..1146
                     /gene="rppH"
                     /locus_tag="PXC99_001544"
     CDS             502..1146
                     /gene="rppH"
                     /locus_tag="PXC99_001544"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HDL5417994.1"
                     /translation="MIDFDGYRPNVGIVICNKHGQVLWAKRFGQNSWQFPQGGINEGE
                     NIEAAMYRELYEEVGLSKKDVRLLWASKYWLKYKLPKRLVRNEGSGPVCIGQKQRWFL
                     LQLIGDESLINLKTTKNPEFDGWRWVSFWYPVRQVVSFKRDVYRKAMKEFAQVLQNNI
                     QKATDDKTGEKPRIERGETSPHTYKKTSQDSAKAYKREARKPYRPWHQHNQKGK"
     gene            1148..1936
                     /locus_tag="PXC99_001545"
     CDS             1148..1936
                     /locus_tag="PXC99_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDL5417995.1"
                     /translation="MTILLSCLFLGVFVGFLAGLFGIGGGLIIVPSLVFLLPMAGVPP
                     EYIMSTALGTSFSTIIITAFASAQRHHKLGNVDIQTSKYFIPALMVSVFLSGLVVSRL
                     DPQLMSRIFAVMVLYLAGKMIFSIKRAPKNKPLTVQTTIIGGSIIGALASMAGIAGGA
                     FIVPFLNDRGLEMKRAIGTSSFCGAFLGLSGTISFIVSGWGLEGMPDYSLGYVYLPAL
                     FGITATSFFTSKMGASAANALPVPMLKKAFAVLLVCIAINMFLK"
     gene            1944..2741
                     /gene="lgt"
                     /locus_tag="PXC99_001546"
     CDS             1944..2741
                     /gene="lgt"
                     /locus_tag="PXC99_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HDL5417996.1"
                     /translation="MNEQFIQFPQISPIVFEIGPIALRWYGLMYLAGFAFAYWLGMRR
                     AKNSNGVWTTEQVDSLVYTCFWGVVLGGRIGDVFFYSFDRFLQDPLYLFRIWEGGMSF
                     HGGLIGVIVAMIWVSYRQKRNFWQTADFIAPLVPFGLGMGRIGNFINDELWGRVTDVP
                     WAVLFPSGGYLPRHPSQLYEAFLEGVVLLFILNWFIQKPRPAGAVSGLFLIGYGTFRF
                     IVEYFREIDHNVNTTADLITRGQLLSLPMIIGGILIMAWAYKVNKVK"
     gene            2828..3496
                     /locus_tag="PXC99_001547"
     CDS             2828..3496
                     /locus_tag="PXC99_001547"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HDL5417997.1"
                     /translation="MSKKYKVIGFDLDGTLINTLPDLTLVANSMFLEAGLPTVTQEKV
                     LTWIGKGADIFFQNAVAHTGRIFQADELVKMRVSFDKYYATYVCEESTLFPNVKETLE
                     ILKANDYPLVVITNKPTKLVEPVLSAFGIYHLFDETLGGQSLPKIKPHPDPMFFICEK
                     FGITPSELLFVGDSENDVIAAKAAGCDVVGLTYGYNYNVPIEQSNPTFVTSEFKDVLK
                     IVGL"
     gene            3566..3826
                     /locus_tag="PXC99_001548"
     CDS             3566..3826
                     /locus_tag="PXC99_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HDL5417998.1"
                     /translation="MPTIALRQVGGSVAMVIPPAFLEALKLSVGSKVDLSLNDNQLVI
                     NPARPKVKYSLEELLRQSDFEAARNEESQSWLSEPAIGKEIL"
     gene            3823..4155
                     /locus_tag="PXC99_001549"
     CDS             3823..4155
                     /locus_tag="PXC99_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HDL5417999.1"
                     /translation="MKRGDIYWLDLDPTLGHEQSGFRPVVIVSVTAFNLASKLPVVVP
                     ITNGGAFAERLGFAVSLKDAGLKTTGIIRCDQPRTVDIAQRHGKFIEALPESLLDEIM
                     ARVSVIFE"
     gene            4282..5313
                     /gene="trpS"
                     /locus_tag="PXC99_001550"
     CDS             4282..5313
                     /gene="trpS"
                     /locus_tag="PXC99_001550"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HDL5418000.1"
                     /translation="MSKPIVFSGVQPSGELTIGNYLGALRNWVKMQDDYDCVYCIVDQ
                     HAITVRQDPESLRKSTLDVLALYLACGIDPNKSTIFIQSHVPEHAQLAWVLNCYTYFG
                     EMGRMTQFKDKSARYEENVNVGLFTYPVLMAADILLYQANQVPVGDDQKQHLEITRDI
                     ANRFNALYGKKDSEGNLIEPVFAVPEVFIAKSGARVMSLLEPTKKMSKSDDNRNNVIG
                     LLEDPKAVAKKIKRAMTDGDEPPVVRYDVQNKAGVSNLLDILSAITGKTIAELETEFE
                     GKMYGHLKTEVADKVSELLTNLQERYHHYRQDEALLEKIYREGAEKARAQAKATLDKV
                     YELVGFVRY"
     gene            complement(5377..6132)
                     /locus_tag="PXC99_001551"
     CDS             complement(5377..6132)
                     /locus_tag="PXC99_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HDL5418001.1"
                     /translation="MKFIKKLSYSVFLATVITACATTESINQEAAQSYAQVKTQARQQ
                     NAIDNSSATAKRIHTVFHKMKPYAERANQTGVPFHWEITVLKSDELNAWAMPGGKMAF
                     YTGLVERLNLSNDEIAVVMGHEMAHALKEHGKSDRTVSAITSIVGAIADVAVTASTGV
                     STEGLLSTGVDLIATKPFSRSQETEADEVGLILMAESGYNPSAAPNVWVKMSKANGDS
                     GLSIFSTHPSNADRQENLARLVPEAMKIYNARK"
     gene            complement(6188..6715)
                     /gene="ppa"
                     /locus_tag="PXC99_001552"
     CDS             complement(6188..6715)
                     /gene="ppa"
                     /locus_tag="PXC99_001552"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HDL5418002.1"
                     /translation="MGLELVPAGKELPDDIYVVIEIPANSDPIKYEVDKETGALFVDR
                     FMATAMFYPANYGYVNNTLSSDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGG
                     DAKVVAVPHTKLSKEYDHIKDVGDLPALLKAQIQHFFESYKALEAGKWVKVEGWGDVN
                     EARQEILESFERAKK"
     gene            6932..7007
                     /locus_tag="PXC99_001553"
     tRNA            6932..7007
                     /locus_tag="PXC99_001553"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6965..6967,aa:Lys,seq:ttt)
     gene            7030..7105
                     /locus_tag="PXC99_001554"
     tRNA            7030..7105
                     /locus_tag="PXC99_001554"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7063..7065,aa:Lys,seq:ttt)
     gene            7127..7202
                     /locus_tag="PXC99_001555"
     tRNA            7127..7202
                     /locus_tag="PXC99_001555"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7160..7162,aa:Lys,seq:ttt)
     gene            7295..8329
                     /gene="mltG"
                     /locus_tag="PXC99_001556"
     CDS             7295..8329
                     /gene="mltG"
                     /locus_tag="PXC99_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HDL5418003.1"
                     /translation="MLKKILIALGLAGVIACGGLFYGYQKLTSLAEHPITVQPNQLFV
                     LEKGVSSQKLAALLEEQGIVTHDDADLIPYLMRLYPELSKFKAGAYSLAGLTTVKDLL
                     AHLSSGKEVQLNVQFIEGKTFKIWREQLAKADYLQHTLQGKSEKEIADLLGIPHEKIE
                     GWIAPDTYNYTPNSTDLALLKRAYQKQKTALEQAWKNRAENLPLATPYEMLILASIVE
                     KETGIATERPQVASVFINRLRNNMRLQTDPTVIYGMGDRYNGNIRRKDLEEATPYNTY
                     QIDGLPPTPIAMPSEASIKAVANPDNTPYLYFVADGTGGHKFSKTLNEHNKAVAEWIQ
                     IERKRKNEQK"
     gene            8340..8960
                     /locus_tag="PXC99_001557"
     CDS             8340..8960
                     /locus_tag="PXC99_001557"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HDL5418004.1"
                     /translation="MRGKFIVIEGLEGAGKTTAHQVILKELEQAGINDVVMTREPGGT
                     PLAEKLRHLIKHETEEAINDKAELLMLYAARVQLVENVIKPALAEGKWVLGDRHDMSS
                     QAYQGGGRKLDRHLLETLKESVLGTFEPDLTIYLDLDPVIGLERARGRGELDRIEQQS
                     LDFFYRTRERYLELTQHNDKAVIINAEQPIEQVTADIQQVIRNWLK"
     gene            8960..9937
                     /locus_tag="PXC99_001558"
     CDS             8960..9937
                     /locus_tag="PXC99_001558"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HDL5418005.1"
                     /translation="MYPWLESTYQQLTDSFLQGRGHHALLFKTDVGLGTDTLIYKVAE
                     WLLCSQKLRHQPCLECKSCLLMQSNNHPDFHILEPIEDKDIGIDQVRELIYKLQNFAQ
                     QGGNTVVYIRGVDRLTEASSNALLKTLEEPRENVYFLLEAPLQATVLATIQSRSQTWV
                     LYAPQASEVMAWLQTQFPAISTDDLEIALRLCHSRPLICKNFIENDRLQQRKTFLQTF
                     WRFYKSHDVFLLFQAFAQEKELILQQLEWLESFFSDALKAKMAISHGWLNPDLQNGIL
                     PFSQQLTTHGLLKGHQILQQTQRDLTEINAVNPELMLLDCLTKLVLVFE"
     gene            10068..10310
                     /locus_tag="PXC99_001559"
     CDS             10068..10310
                     /locus_tag="PXC99_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system ParD family
                     antitoxin"
                     /protein_id="HDL5418006.1"
                     /translation="MARTTSVTLGEPLNDFVNEMVASGRYGSTSEVVRTALRMLEEKE
                     QYLAQLRQAIDDGDASGYATETIDEMMLRVKAELNV"
     gene            10303..10587
                     /locus_tag="PXC99_001560"
     CDS             10303..10587
                     /locus_tag="PXC99_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5418007.1"
                     /translation="MYKLSAQALRDQEKLFRYSISQFGVQQTESYFADLKHILNLLAD
                     FPTMGTSAEYIRGGLRMHTHQSHTIYYRIKADHIFIVRILHNQMNHKRYI"
     gene            10592..11380
                     /locus_tag="PXC99_001561"
     CDS             10592..11380
                     /locus_tag="PXC99_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchF/TatD family DNA exonuclease"
                     /protein_id="HDL5418008.1"
                     /translation="MKDLFIIDSHCHLDSLDYETRHKNVDEVIENAKARGVHHFISVC
                     TTVGRFEAMKNLTAHRNDVSLSCGVHPLNVEDEPFDYDKLFQFAQDPKVVAIGETGLD
                     YHYTPETKALQQSLFVQQIEIANKLNKPLIIHSRSARQDTMDMLEQNNAEKCGGVLHC
                     FTEDWAMAKRALDIGFYISISGIITFRNAEELREVVRKVPLDRLLVETDSPYLAPIPY
                     RGKPNQPAYVRETCEYVATLKGVSTEELARITTENVQHLFNIKL"
     gene            11390..11911
                     /locus_tag="PXC99_001562"
     CDS             11390..11911
                     /locus_tag="PXC99_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1523 family protein"
                     /protein_id="HDL5418009.1"
                     /translation="MRAILKYFLILVSLSFFIVLGGAVNYAMPSYEDTVVTGMEVRRM
                     DKDGIISKANPADGEVRDVYFLFTEDPETKKVMVYRNEDTGWGLPPYFKFGSADIQAK
                     AQAYANEKQRVQIKYYGWRINWLNEFRNIVSIKPLEEAETVSKPIMSYVLYAVLAFLF
                     FLSVQFIRGIFKD"
     gene            11986..12687
                     /gene="lpxH"
                     /locus_tag="PXC99_001563"
     CDS             11986..12687
                     /gene="lpxH"
                     /locus_tag="PXC99_001563"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HDL5418010.1"
                     /translation="MTYYFIADLHLNENQPEITHLFLQFMQEKALLAEAVYILGDLFD
                     FWIGDDEQSELISTVKQAIKTLTTSGTKCYFICGNRDFLIGKRFSEQTGMVILPDYHV
                     IDLFGTSTLLCHGDTLCTDDVKYQQFRKKVHQKWRQAIFLMFPLSWRIRIAEKIRSKS
                     KQEKRDKSAEIMDVNAEVTAQIVAKYNTTQLIHGHTHRQAIHQHNGFTRIVLGDWKEN
                     YASILSVTEQGAEFI"
     gene            12684..13474
                     /locus_tag="PXC99_001564"
                     /pseudo
     CDS             12684..13474
                     /locus_tag="PXC99_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618283.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
BASE COUNT         4034 a         2864 c         2797 g         3809 t
ORIGIN      
        1 aaccaattag cataaaaata caattgcaca aaaagcaacc aacaaaacaa ttgattattc
       61 acagattgaa aagatgacac taactatttg atttaattat aatttatgga aatagcaaaa
      121 ggctgatttg agttattcac gcctaatttg aaaaactatc acatctttat ccacaaatgg
      181 tggggataac tctgctttat ttgcgaagca aaaattgccc tgcttattca ttttaaaatt
      241 taaacttatt ttgacgagaa aaaacgcaac aacttgatct ttatccagat cattgcttaa
      301 gaaaaagatc gcatttttag atctgattaa ttgctctgtt ttacaacgtt ccgcctgttt
      361 atcctcaact tataccactt atattcaata gttatccaca aagttattca caagcggtta
      421 tattttatgg tttttttgca aatcaaccca aagtatgaaa caattctccc attctagaat
      481 ttttatcaat taggtggtcg agtgatcgat ttcgatggct accgcccaaa tgttggaatc
      541 gttatctgta ataagcacgg gcaagttctg tgggcaaaac ggtttggtca aaactcttgg
      601 caatttccgc aaggtggaat taatgagggg gaaaacattg aagcagcaat gtaccgtgag
      661 ctttatgaag aggtcggctt aagtaaaaaa gatgtacgat tgctttgggc gtctaaatat
      721 tggctaaaat ataaactgcc aaaacgcttg gtacgtaatg aaggctctgg tcctgtctgt
      781 atcgggcaaa aacagcgttg gtttctactg caattaatcg gtgatgaaag cctgattaat
      841 ttgaaaacca cgaaaaatcc ggagtttgac ggctggcgtt gggtcagctt ttggtatcca
      901 gtccgccaag tggtctcttt taaacgagat gtttatcgca aagcgatgaa agagtttgca
      961 caggttttgc aaaacaatat tcaaaaagcg actgacgata aaaccggtga gaaaccacgc
     1021 attgagcgtg gcgagacttc gccccatact tataaaaaaa cctctcagga ttctgccaaa
     1081 gcctataaac gagaagctcg taagccttat cgtccttggc atcaacataa tcaaaaagga
     1141 aaataagatg actattttat taagctgcct ttttttaggg gtgtttgtcg gctttttagc
     1201 cggcttgttc ggcattggtg gtgggttaat catcgtgccg agtttggtct tcctactgcc
     1261 catggcaggt gtaccgccgg aatatataat gtccaccgca ctcggcacat cattttcaac
     1321 cattattatt accgcctttg catcggcaca acgccatcat aagttaggca atgtcgatat
     1381 ccaaaccagt aaatatttta ttccagcgtt gatggtttcg gtttttctat cgggcttggt
     1441 ggtaagccgc ctcgatccgc aactgatgtc tagaattttt gcggtaatgg tactttacct
     1501 tgcaggtaaa atgatttttt caataaaaag agcaccgaaa aataaaccac ttaccgttca
     1561 aacgacgata atcggaggtt caatcatcgg tgcgttagcc agtatggcag ggatcgcagg
     1621 tggagccttt attgtaccat ttttaaacga tcgaggctta gaaatgaaac gtgccatcgg
     1681 cacttcctca ttttgcggag catttttagg tttatctggc acaatcagct ttattgtaag
     1741 tggctggggc ttagaaggaa tgcctgatta ttctctcggt tatgtttatt taccggctct
     1801 gtttggtatt acggcaactt catttttcac ctcaaaaatg ggggcaagtg ccgccaacgc
     1861 tctacctgtg ccgatgctga aaaaagcctt tgcggtgctt ttggtctgta tcgccatcaa
     1921 tatgttttta aaataaggac actatgaacg aacaatttat ccaatttcca caaattagcc
     1981 cgattgtgtt tgaaatcggt ccgattgccc tgcgttggta tgggctaatg tatttagccg
     2041 gctttgcctt tgcctactgg ctgggaatga gacgggcgaa aaattccaat ggagtttgga
     2101 caaccgagca agtggatagc ttagtctata cttgcttctg gggcgtagta ttaggtgggc
     2161 gtatcggcga tgtgttcttt tatagcttcg accgtttctt acaagatccg ctctacctct
     2221 ttcgcatttg ggaaggcgga atgtcctttc acggcggttt aatcggcgtc attgtagcaa
     2281 tgatttgggt ttcctaccgc caaaaacgca atttctggca gacagcagat tttatcgcac
     2341 cgctagtacc gttcgggcta ggtatggggc gtatcggcaa tttcattaac gatgaacttt
     2401 gggggcgtgt aaccgatgtg ccttgggcgg tgttatttcc aagcggtggc tatcttcccc
     2461 gccacccgtc acagctttat gaagcctttt tagagggtgt ggtgttactc tttatcctca
     2521 actggtttat tcaaaagcct cgcccggcag gtgcggtttc agggttattt ttaatcggct
     2581 acggcacatt ccgctttatt gtggaatact tccgagaaat cgaccataac gtcaatacca
     2641 ccgcagattt aatcactcgt gggcaactac tctctttacc gatgattatc ggcggcatac
     2701 tgattatggc gtgggcgtat aaagtaaaca aagtgaaata aacgtagggg caagtcaata
     2761 tttgccctca ttacaaaaat tgcaaaaaat ttgcagaaaa cgaccgcttg tgtttgaagg
     2821 atatactatg agtaaaaaat acaaagtcat cggtttcgac ttagacggaa cgctaatcaa
     2881 caccctcccc gatctcactc ttgtcgccaa ttcaatgttt ctagaagccg gtttgccaac
     2941 ggttacacaa gaaaaagtgc tgacttggat cggtaaaggg gcagatattt tcttccaaaa
     3001 tgcggttgct cacaccggca gaattttcca agccgatgag ttggtgaaaa tgcgagtgag
     3061 ctttgataaa tactacgcca cctatgtgtg cgaggaaagc acccttttcc caaatgtgaa
     3121 agaaacctta gaaatcctca aagcaaacga ctacccgctg gtggtgatta ccaacaaacc
     3181 gaccaaatta gtcgagccgg tgctttccgc tttcggcatt tatcatttat tcgatgaaac
     3241 ccttggtggg caatcgctcc ccaaaatcaa accgcaccct gacccgatgt tttttatctg
     3301 cgaaaaattc ggcattaccc catcagaatt actttttgtc ggcgactcag aaaatgacgt
     3361 gattgccgcc aaagccgccg gttgtgatgt ggttggacta acttacggct ataactacaa
     3421 tgtgccgatt gaacaatcta acccgacttt tgtgacatct gaatttaaag atgtgttgaa
     3481 aattgtgggg ttataaagaa aacatttgtt ttcttttgat gtttgcttta gactttccga
     3541 acctaaagat ttaaaggagt aaagtatgcc aacaatcgca ttacgtcagg tcggtggctc
     3601 ggttgcaatg gtgattccgc ctgctttttt agaggcactc aagctctccg tcggtagcaa
     3661 agtggatttg tctttaaacg acaaccaact cgtgattaat cctgcccgcc caaaagtgaa
     3721 atacagctta gaggaattat taagacaatc cgattttgag gcagcaagga atgaagaaag
     3781 ccaatcgtgg ttatccgagc cggcaatagg aaaagaaatt ttatgaaacg tggcgatatt
     3841 tactggctcg atcttgatcc aaccttagga cacgaacaat caggcttccg ccccgttgta
     3901 attgtttccg taactgcatt taatctagcc agtaaactgc ctgtggttgt gccgattact
     3961 aacggtggag cttttgctga aagactgggc tttgccgttt cattaaaaga tgccggctta
     4021 aaaacaacag ggattattcg atgcgatcaa cctcgcacag tcgatattgc acaacgccat
     4081 ggaaaattta tcgaagcctt acccgaaagc ctacttgatg aaattatggc aagggtttca
     4141 gtgatttttg agtaagatac aagcggtctg atttgctcta ttttttgcaa aatcatcaat
     4201 aaatctgacc gcttgtactt ttatcccttc ccaataaccg ttaagataac ctatattttt
     4261 caaatcaaac gagaagataa aatgagcaaa cctattgtat ttagtggcgt gcagccctca
     4321 ggtgaattga ctatcggtaa ctacttaggg gcgttacgca actgggtgaa aatgcaagat
     4381 gattatgact gtgtatattg cattgtcgat caacacgcca ttaccgttcg tcaagatccg
     4441 gagtcgctac gcaaatcaac tttagatgtg ttagccctgt atttagcttg tggcattgat
     4501 ccaaacaaaa gcactatttt tattcaatcc cacgtgccgg aacacgccca attagcttgg
     4561 gtgctgaact gttacaccta tttcggtgaa atggggcgta tgacgcaatt taaagataaa
     4621 tcagcacgct atgaagagaa tgtcaatgtg ggcttattta cttatccggt attaatggcg
     4681 gcagatattc tgctttacca agccaaccaa gtgccggtag gcgatgacca aaaacaacat
     4741 ttggaaatca cccgtgacat tgccaaccgt ttcaatgcct tatacggcaa aaaagattcc
     4801 gaaggcaacc tgatcgagcc tgtttttgca gtgccggaag tctttattgc gaaatccggg
     4861 gcaagagtga tgtcgctact tgagccgacc aaaaaaatgt caaaatcgga cgataatcgt
     4921 aacaatgtga ttggactatt ggaagatccg aaagcggtag cgaagaaaat caaacgggca
     4981 atgaccgatg gcgatgaacc gccagtagtg cgttatgacg tacagaataa agccggtgtc
     5041 tcgaatttat tggatattct ctccgccatt accggcaaaa ccattgccga attagaaacc
     5101 gaatttgaag gcaaaatgta tggtcatttg aaaacagaag tagcagataa ggtttccgaa
     5161 ctattaacca atctgcaaga acgttatcac cactaccgcc aagatgaagc attattggaa
     5221 aaaatctacc gtgaaggggc agaaaaagct cgagctcaag ccaaagcaac gttagataag
     5281 gtatatgaat tagtcggttt tgtgcgttac taacacttaa tgaaaaatgc tcttgaggat
     5341 tcaagagcat ttttgcaaaa aagaaccgat tgtcaattat ttacgggcgt tataaatctt
     5401 cattgcttcc ggcacaaggc gggctaagtt ttcttgacgg tcagcatttg atgggtgagt
     5461 tgagaaaatg gacaagcctg aatcgccatt ggctttactc atttttaccc aaacattcgg
     5521 cgctgctgat gggttgtagc ctgattctgc cattaaaatt aacccaactt cgtccgcctc
     5581 agtctcttgg ctgcgagaga atggcttggt ggcaatcaaa tccacgccag tgctgagtaa
     5641 accttcggtg cttacgcctg ttgaggcagt cacagccaca tctgcaatag cacctacaat
     5701 actggtaata gcgctaaccg tacggtctga tttaccgtgt tctttcagtg cgtgagccat
     5761 ctcgtgtccc attaccactg caatttcatc gttcgataaa ttaagtcttt ccactaaccc
     5821 cgtgtaaaac gccattttac cgcccggcat cgcccacgca ttgagttcat ccgatttcaa
     5881 tacggtaatt tcccaatgaa aaggtacacc agtctggttg gctctttccg cataaggctt
     5941 cattttatga aaaacagtgt gaatccgctt agcggtggca gacgaattgt caatcgcatt
     6001 ttgctgacga gcttgggttt tcacttgagc ataactttga gccgcttctt ggttaatgct
     6061 ttctgttgtg gcacaagcgg taatcactgt tgctaaaaaa actgaataac ttaatttttt
     6121 gatgaatttc attttatatc ccacaaaaaa tgccaaacaa atttgcttgg cattcaaaaa
     6181 taaataatta tttcttagca cgctcgaatg attctaagat ttcttggcga gcttcgttta
     6241 catcgcccca accttctact ttcacccatt tgcccgcttc taatgcttta tagctttcga
     6301 agaagtgctg gatttgtgct tttaataacg ccggtaagtc acctacatct ttgatgtggt
     6361 catactcttt acttaatttg gtgtgtggaa cagcaaccac ttttgcatca ccgccggctt
     6421 catcggtcat ttttaacaca ccgacaggac ggcaacgaat caccgaaccc ggttgtaacg
     6481 gatatggtgt tggcactaat acatcaaccg ggtcaccgtc tgatgataag gtgttattca
     6541 cataaccata gtttgccgga tagaacattg cggttgccat aaagcgatcc acaaataatg
     6601 ccccggtttc tttgtccact tcatatttga ttggatcaga gtttgccgga atttcaatta
     6661 caacataaat atcgtccggt aattctttac cggcaggaac taattctaag cccattttgg
     6721 tttccttcta taataggtga aataaacggc gtgattatag cctattttca gaaaaagata
     6781 aaagcccgtt tctcttttca ttttccgcca acaaatccgg ctaatttttt gctaaattgc
     6841 ttacaaaccg cacactcaac catttttcga taaaaaaaac ttgccaaagt tttaaaaatc
     6901 cgtaagatat gccctcgtta cgcaagatta tgggtcatta gctcagccgg tagagcagcg
     6961 gacttttaat ccgttggtcg aaggttcgaa tccttcatga cccaccatta atcttcaaaa
     7021 cacctctaag ggtcattagc tcagtcggta gagcagcgga cttttaatcc gttggtcgaa
     7081 ggttcgaatc cttcatgacc caccattaat ttcaaaactc ctctgagggt cattagctca
     7141 gtcggtagag cagcggactt ttaatccgtt ggtcgaaggt tcgaatcctt catgacccac
     7201 catttactca aatcccattt gcaaattttt ctgaaaaaac aaccgcttta tagtagaatt
     7261 cagtcaattt ttatcacttt tattttattc atcaatgcta aaaaaaatcc ttattgcatt
     7321 aggcttagcc ggcgttattg cttgcggtgg actgttttac ggctaccaaa aactcacctc
     7381 tttagccgaa cacccgatca cggttcagcc gaatcaactt ttcgtattgg aaaaaggcgt
     7441 ttccagccaa aaattagcgg ctctgttaga agagcaaggc attgtcaccc acgatgacgc
     7501 cgatcttatc ccttatttaa tgcgattata ccctgagtta agcaaattca aggctggtgc
     7561 ttattcactc gcaggcttaa cgacagtaaa agatttgctc gctcatttaa gctccggcaa
     7621 agaagtgcaa cttaacgtgc aatttattga gggcaaaact tttaaaattt ggcgggaaca
     7681 actagcgaaa gccgattatt tacagcacac gctacaaggc aaatcggaaa aagaaatcgc
     7741 tgacttactc ggcattccac acgaaaaaat cgaaggttgg atagccccgg atacttacaa
     7801 ctacacgccc aattccaccg atttagcctt gcttaaacgg gcttatcaaa agcagaaaac
     7861 ggcgttggaa caggcttgga aaaatagagc ggaaaatcta ccgcttgcaa caccatacga
     7921 aatgctgatt cttgcctcga ttgtggaaaa agagaccggc attgcgaccg aacgcccaca
     7981 agtggcatcg gtctttatta accgtttacg caacaatatg cgactgcaaa ccgatccaac
     8041 cgtcatttac ggaatgggcg atcgttataa cggcaatatc cgccgcaaag atttagaaga
     8101 ggcaacgcca tacaatactt accagattga cggcttaccg ccaacgccga ttgccatgcc
     8161 gagtgaagct tcgattaaag cggttgccaa cccggataat acaccctacc tctattttgt
     8221 ggcagacggc acgggcggtc ataaattcag caaaacactg aatgagcata ataaagcggt
     8281 ggcagaatgg attcaaattg aacgcaaacg caaaaatgaa caaaaatagt gagaacaata
     8341 tgcgtggaaa atttattgta attgaaggct tagagggcgc aggcaaaacg actgctcacc
     8401 aagtgattct caaagagttg gaacaagccg gcattaatga cgtagtaatg acccgagaac
     8461 ccggcggcac cccccttgcc gaaaagttac gccatttaat taaacacgaa accgaagaag
     8521 ccattaacga taaggctgag ctgctaatgc tctacgctgc tcgtgttcaa ttagtcgaaa
     8581 atgtgatcaa acctgccctt gccgaaggca aatgggttct gggcgaccgc cacgatatgt
     8641 cttcccaagc ctatcaaggc ggtggacgta agttggatcg tcacttactc gaaaccttaa
     8701 aagaatcggt actcggcaca ttcgagccag atttaacgat ttatctcgat ctcgatccgg
     8761 tgattggttt agaaagagcc agaggcagag gcgaattaga ccgcatcgaa cagcaaagcc
     8821 ttgacttctt ctaccgcaca cgagagcgtt atttagaatt aacccaacac aacgataaag
     8881 ccgtgatcat caatgccgaa caacccatcg aacaggtgac tgcggatatt caacaagtaa
     8941 ttagaaactg gctgaaataa tgtacccttg gctcgaaagc acttatcaac aacttaccga
     9001 ttcattttta cagggtcgag gtcatcacgc cttactgttc aaaacagatg ttggtcttgg
     9061 tacagacacc ttaatctaca aggtggctga atggttgctt tgcagccaaa aactccgcca
     9121 tcaaccttgt cttgaatgca aaagttgcct gcttatgcaa agcaacaacc accccgattt
     9181 ccacattctt gagccgattg aagacaaaga tattggtatc gaccaagtgc gtgagttgat
     9241 ttataaactc cagaatttcg cccaacaagg gggaaatacg gtcgtttata ttcgaggagt
     9301 tgatcgttta accgaggcaa gcagtaatgc cctgctcaaa accttggaag agccacgtga
     9361 aaacgtctat ttcttgctcg aagcaccgct tcaagcaaca gttttagcta ccattcaaag
     9421 ccgcagccaa acttgggtac tttacgcccc acaagcctca gaagtaatgg cttggctaca
     9481 aacacaattt ccggcaatct caaccgacga cttagagatt gcactccgcc tttgccactc
     9541 acgcccacta atttgcaaaa attttatcga aaatgaccgc ttgcaacagc gaaaaacctt
     9601 tttgcaaacc ttctggcgtt tctacaaaag ccacgatgtc ttcttgttat tccaagcctt
     9661 cgcccaagaa aaagagctga ttttacagca actcgaatgg ctggaaagtt tctttagcga
     9721 tgccctaaaa gctaaaatgg caatcagcca cggttggcta aacccggatc tccaaaacgg
     9781 cattctccct tttagccaac aactaacgac ccacggctta cttaaagggc atcaaattct
     9841 ccaacaaacc cagcgggatt taaccgaaat taacgccgtc aatccggaat tgatgttgct
     9901 agattgcctg acgaagttgg ttttggtgtt tgagtaaaag ccctctctca tagaaggtag
     9961 ctttcaatta gccgtaaaaa gaggcttcta gccctagaat atagtttata acttgcaaaa
    10021 ttatctatct ttgttattgt atgaataatt cacacaagga gaatattatg gcaagaacaa
    10081 ccagcgtgac tttaggcgaa cctttaaatg attttgtaaa tgaaatggtg gcaagtgggc
    10141 gttatggctc taccagtgaa gtagtgagaa ccgctttacg aatgcttgag gaaaaagagc
    10201 aatacttagc tcagttgcga caagccattg atgatggtga tgctagtggt tatgcaaccg
    10261 aaacgattga tgaaatgatg ttgagagtaa aggcggaact taatgtataa actttctgct
    10321 caagcactcc gagatcaaga gaaacttttt cgttacagta tctctcaatt tggtgttcaa
    10381 caaacagaat cttattttgc agatctaaag catattttga atttattagc tgattttcca
    10441 acaatgggaa cttctgcgga atatattcgt ggtggcttgc gaatgcacac acatcaatct
    10501 catacaattt attatcgaat aaaagcagat catatattta ttgttcgcat cttacataac
    10561 caaatgaatc ataaacgcta tatttagaaa aatgaaagac ttatttatca tagactcaca
    10621 ttgtcatcta gattctctag actacgaaac tcgtcacaaa aacgtggacg aagtaattga
    10681 aaatgccaaa gcccgagggg tgcatcattt tatctcggtt tgcactacag ttgggcgttt
    10741 tgaagcaatg aaaaacttaa ccgcccatcg taatgacgtt tcactttctt gtggcgttca
    10801 cccgttgaat gtggaagatg aaccttttga ttacgataaa ttatttcagt tcgctcaaga
    10861 tccgaaagtg gttgccattg gggaaactgg tttggattat cactacacac cggaaaccaa
    10921 agcgttgcaa caatcgcttt tcgttcaaca aattgaaatt gcaaacaaac tcaataagcc
    10981 actcattatc cattctcgtt cggcacgcca agatacgatg gatatgttgg aacaaaataa
    11041 tgccgaaaaa tgcggtgggg tgttgcattg ctttaccgaa gattgggcaa tggcaaaacg
    11101 ggctttagac atcggctttt atatctcaat ttcgggcatt attactttcc gcaatgcaga
    11161 agaactccga gaagtcgtgc gaaaagtgcc gttagatcgc ttattggttg aaacagattc
    11221 cccttatctt gccccgattc cttatcgtgg taagccgaac cagccggcgt atgtgcggga
    11281 aacttgcgaa tatgtggcga cattaaaagg cgtttcaact gaagaattag ctcgcattac
    11341 aaccgaaaat gtgcaacact tattcaacat taaattataa ggaactaata tgagagcaat
    11401 acttaagtat tttctgattc ttgtctcact atcatttttt attgtattag gcggtgcagt
    11461 taattatgca atgccaagtt atgaagatac cgtagtaaca ggtatggaag tacgccgaat
    11521 ggataaagat ggtattatca gcaaagcgaa tcctgctgat ggcgaggtgc gcgatgttta
    11581 tttcttattc acggaagatc ctgaaaccaa aaaggtaatg gtttatcgta atgaagatac
    11641 cggctggggg ttgcctcctt atttcaaatt cggatctgcc gacattcaag ccaaagctca
    11701 agcctacgct aacgaaaaac aacgtgtgca aattaaatat tacggctggc gaatcaattg
    11761 gctaaatgaa tttagaaata ttgtttcaat caagccatta gaagaagcag aaacagtcag
    11821 caaaccaatt atgagctatg tactttatgc cgtattggcg ttcttgttct tcctctcagt
    11881 acaatttatt cgtggcattt ttaaagatta atgccgatta acctttgaca aacggttcga
    11941 ttttgtaaaa aattgaaccg ttttcttttt tatcaacaat atcaaatgac gtactatttt
    12001 attgccgatc tccacttaaa tgaaaatcag cctgaaatta cccacctctt tttgcaattt
    12061 atgcaagaaa aagcactact tgcagaagcg gtttatatct taggtgatct gtttgatttc
    12121 tggattggcg atgatgagca gtctgaactc atttcaaccg ttaaacaggc aatcaaaacc
    12181 ctcactacaa gcggtacaaa atgctatttt atttgcggaa atcgtgattt tttaattggc
    12241 aaacgattca gcgaacaaac gggtatggtt attttgcctg attatcacgt tatagattta
    12301 ttcggcacat ctaccttgct ttgccacggc gatacgcttt gtactgatga tgtgaaatat
    12361 caacaatttc gtaaaaaagt ccaccaaaaa tggcgacaag ctatcttttt gatgtttccg
    12421 ctttcttggc gaattcgtat tgcggagaaa attcgatcca aaagcaaaca agaaaagcgt
    12481 gataaatccg ctgaaattat ggacgtaaac gctgaagtta ccgctcaaat tgtcgcaaaa
    12541 tacaatacaa ctcaacttat acacgggcat acgcatcgac aagcaatcca tcagcataat
    12601 ggatttaccc gcattgtatt aggcgactgg aaagaaaatt acgcctctat tttaagcgta
    12661 accgagcaag gagctgaatt tatatgatta atgtgattat tccttgctat aacgccgaaa
    12721 acacccttgt tcgtgcagtg caaagtgtat taaatcagtc tggattaaat ctattgtggc
    12781 ttattgatga tgcttcaacg gataatacgc ttgccttagc taaacattta caagcccaag
    12841 tgcctgataa aattagagtg gaacaaatgc ctcaaaatgg cggtgttgcc aaagcacgca
    12901 actggggagc attacaaagt gaaacagatt taattgcctt tttagatgct gatgatgctt
    12961 atgaaaacgg ggcattgcaa gttgctgaaa agatttttga gtttaaaccg gaaaccggct
    13021 tggttcggtt agcattaaaa ccggtaactt agatcaacgt tacagctctc accctaattt
    13081 tgagttagct tggcaatata tgcaaatgac tggtgcaggc aacactgtat ttcggcgtag
    13141 tttcttcctc gcttgtggcg gctttccaca acatcagctc ttccaagaat taggtggaga
    13201 agatggtgct ttaggcatag ccactacaca aattagctct gtagctactg catttaatga
    13261 tgtcggtgtt ttacattact gccgagaggg tatgcacgca gaaagattat taaatgcgat
    13321 tttattcaac gaaaaagatc ccaatgttac tgaagaaaaa gttaaacaag ccaacctaat
    13381 taccgaaaat attgttaata atattagaaa tctacaagac tgtcttaata gtaaagggat
    13441 tggtattaag ccttatacgc ttgaatggag ctaaaaaagc atttgcagat tttccctaaa
    13501 aaaa
//
LOCUS       DANLVT010000064        13447 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.064, whole genome shotgun sequence.
ACCESSION   DANLVT010000064 DANLVT010000000
VERSION     DANLVT010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13447)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13447)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13447
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.064"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            3..797
                     /locus_tag="PXC99_001565"
     CDS             3..797
                     /locus_tag="PXC99_001565"
                     /EC_number="3.5.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HDL5418011.1"
                     /translation="MRLIPLETDHDVSVWAARYIVDRINAFQPTKEKPFVLGLPTGGT
                     PEKTYKELIKLYQAGEVSFKNVVTFNMDEYVGLPKEHPESYHSFMFKHFFDHVDIPLE
                     NINILNGMAEDVNAECERYEEKIRFYGKIHLFMGGVGVDGHIAFNEPASSLSSRTRIK
                     TLTEDTRIANSRFFNNDVSQVPKFALTVGVGTLLDAEEVMILVTGHNKALALQACVEG
                     AVNHLWTISCLQLHRRGIVVCDEPATQELKVKTVKYFKELEKNVAR"
     gene            878..2020
                     /gene="nagA"
                     /locus_tag="PXC99_001566"
     CDS             878..2020
                     /gene="nagA"
                     /locus_tag="PXC99_001566"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HDL5418012.1"
                     /translation="MNHYALTNCVIYTGEQVLYQHALVVKEDKIDSIVLEENLPLDLQ
                     KIDLKGANLSAGFIDLQLNGCGGVMFNEEITTRTLEIMQETNLRSGTTSYLPTFITSP
                     DEGVKQAVAVMREYLSKHKNQALGLHLEGPYLSVAKKGVHRPEFIREISPEMLDFLCD
                     NGDVITKITIAAENPTADHIKRFNDAGIIVSIGHSNATFAQTKQRIAEGAAFATHLHN
                     AMSPVSNGREGGVVGAVLDSDIYTGIICDGLHVEWGNIRIAKKAKGDKLVIVSDAVAA
                     AGSDIESFIFVGKKVTVKDGKCYDEFGALGGAAITMIESIRNVVQHCDISLNEAIRMS
                     TLYPAKAIGVEETLGSLEAGKIANLAIFDNQFEVKATAVNGQLQWH"
     gene            2102..2416
                     /locus_tag="PXC99_001567"
     CDS             2102..2416
                     /locus_tag="PXC99_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2322 family protein"
                     /protein_id="HDL5418013.1"
                     /translation="MQFKDYLATFPTIDHLAGLNVINSGEVIQHIPAIEGKLGSLKLY
                     NALFAKFDGKLTASAAKQGLEWFAEHVEDAKNNVGKHPNIDLLFRVIEQDLSLSLEPI
                     VK"
     gene            complement(2495..3685)
                     /locus_tag="PXC99_001568"
     CDS             complement(2495..3685)
                     /locus_tag="PXC99_001568"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HDL5418014.1"
                     /translation="MTQAIESVLAELKRGVENIYSEEDLITKLKENRPLRIKLGADPT
                     APDIHLGHTVVLNKLRQFQQFGHEVYFLIGDFTGMVGDPSGKNSTRPPLSREDVLRNA
                     ETYKEQIFKILDPQKTKIVFNSEWLGKLGTEGMIRLASNYTVARMLEREDFKNRFTNQ
                     QPIAIHEFIYPLLQGHDSVELKADVELGGTDQTFNLLVGRELQKSAGQKPQVAMTLPL
                     LVGLDGEKKMSKSLGNYIGVTEAPSEMFGKIMSISDDLMWDWYNLLSFRPLDEIAQLK
                     ADVENGKNPRDVKILLAKEIIARFHDEAAADAAEQEFINRFQKGAIPDEVPEFTFEGE
                     IGLAALLKEAGLVPSTSEAIRSAQQGGVKIDGEKVEDVKQTAQKGTFVYQVGKRKFAR
                     ITVK"
     gene            complement(4048..5352)
                     /locus_tag="PXC99_001569"
     CDS             complement(4048..5352)
                     /locus_tag="PXC99_001569"
                     /EC_number="7.2.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium ion-translocating decarboxylase subunit
                     beta"
                     /protein_id="HDL5418015.1"
                     /translation="MESIIALFKGMGLMHLELGQAIMIVISLVLLWLAIARKFEPLLL
                     LPIGFGGLMSNIPEAGMAMTALDNLLHSGSAEQLAIIAAKVNSTSLDLHSIKDAIALA
                     APSVQNELEVMAGDMGYTAGVLALFYKVAIGYGVAPLIIFMGVGAMTDFGPLLANPRM
                     LMLGAAAQFGIFATVLGALGLNWLGIIDFTLPQAAAIGIIGGADGPTAIYLASKLAPE
                     LLGAIAVAAYSYMALVPLIQPPIMKALTTEQERKIRMVQLRNVSNREKIIFPIVLLLL
                     VALLLPDAAPLLGMFCFGNLLRTSGVVERLNDTAQNALINIVTIFLGLSVGAKLVADK
                     FLQPQTLGILVLGVIAFGIGTASGVIMAKIMNRFSQHKINPLIGSAGVSAVPMAARVS
                     NKVGQEYDKQNFLLMHAMGPNVAGVIGSAIAAGVMLKYISTM"
     gene            complement(5362..7188)
                     /gene="oadA"
                     /locus_tag="PXC99_001570"
     CDS             complement(5362..7188)
                     /gene="oadA"
                     /locus_tag="PXC99_001570"
                     /EC_number="7.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-extruding oxaloacetate decarboxylase
                     subunit alpha"
                     /protein_id="HDL5418016.1"
                     /translation="MTTQPKKIAITDVVLRDAHQSLFATRLRLDDMLPIASELDNIGY
                     WSLETWGGATFDSCIRFLGEDPWVRLRELKKAMPKTPMQMLLRGQNLLGYRHYADDVV
                     DKFVERSVANGMSVFRVFDALNDPRNMQAALQAVKKHGGHAQGTLSYTTSPVHTLQTW
                     LDVTEQLLEIGVDSLVIKDMSGILTPMAAYELVSEIKKRYDVELHLHCHSTTGMAEMA
                     LLKAIEAGVDGVDTSISSMSGTYGHPATESIVATLQGTPYETGLSIPALEKISAYFRN
                     VRKKYAKFEGQLRGIDSRILVAQVPGGMLTNLESQLKQQNASDKLDLVLQEIPRVRED
                     LGNIPLVTPTSQIVGTQAVMNVLMGERYKTIAKETAGILKGEYGRTPAPVNKALQDRV
                     LEGAEPITDRPADHLPPELEKLVAEVTASAKEKGITLSENMIDDVLIVALFQQVGWKY
                     LENRNNPSAFEPVPSADEAKPAQASAASAPKAQTQSGSAIYTVELEGKAFVVKVSEGG
                     DITNIAPTPATPAPQAVDSAPKSANTLSANAEPVNAPMAGNILKVEVKEGQQVAEGDV
                     LLILEAMKMETQICAAKSGTIQGINVKQGDVVAVNDTLMSIA"
     gene            complement(7228..7482)
                     /locus_tag="PXC99_001571"
     CDS             complement(7228..7482)
                     /locus_tag="PXC99_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxaloacetate decarboxylase subunit gamma"
                     /protein_id="HDL5418017.1"
                     /translation="MAPAELFAEGINLMVAGMGFVMLFLLVLIYAISFISKIINQYFP
                     EPVSIPASKTVPQSPPDDLERLRPVIAAAIAHHRRINGQH"
     gene            complement(7672..8859)
                     /locus_tag="PXC99_001572"
     CDS             complement(7672..8859)
                     /locus_tag="PXC99_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HDL5418018.1"
                     /translation="MSNNNRSALLGAAFLMATSAIGPGFLTQTATFTQTLLASFGFVI
                     LLSILLDIGAQLNIWRIVAVSEKKAQDIANAVLPGAGYFLALLIVMGGLAFNIGNVGG
                     AGLGLNILTGLSPEMGAVVSGAIAVGVFLFHEAGKVMDRFAQIMGFVMIALTIFVAVK
                     ANLPIDDAVVHTFVPEKLDVIAIVTLVGGTVGGYITFAGAHRLLDAGIKGKENLKEVS
                     KSSVSAILIASIMRVVLFLAVLGVVSMGVQLDPKNPAATPFAHVAGDVGLMIFGVVIW
                     AASITSVIGAAYTSVSFITSFSPFIEKHKNCFIVAFIVVSTAVLATIGRPAQVLVFVG
                     TLNGLILPISLGLILLAAHKTKIVGDYKHPVWMTVSGAIVVILMAVLSAMTLSKYISG
                     LMA"
     gene            complement(9134..9871)
                     /gene="pxpA"
                     /locus_tag="PXC99_001573"
     CDS             complement(9134..9871)
                     /gene="pxpA"
                     /locus_tag="PXC99_001573"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HDL5418019.1"
                     /translation="MNHVDLNVDLAEGCGNDHSLLQLVTSANVCCGLHAGDYNEMRKA
                     INWAKENSVRVGAHPSFPDRENFGRTNMQLPDDELKACLLYQLGAAKALCDAENMPMS
                     YVKPHGALYNMAAKDPHLATLIANTVKQFDPNLKLMGLSGSLMLSIAEQHGLETISEV
                     FADRHYLADGSLVPRTRDDAMVESDDEAISQVLQMVLDGTVPTVDGGNVAIKADSICL
                     HGDGEHAVVFAERIKKELQAKGILVKA"
     gene            complement(9858..10771)
                     /locus_tag="PXC99_001574"
                     /pseudo
     CDS             complement(9858..10771)
                     /locus_tag="PXC99_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250478.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
     gene            complement(10768..11415)
                     /gene="pxpB"
                     /locus_tag="PXC99_001575"
     CDS             complement(10768..11415)
                     /gene="pxpB"
                     /locus_tag="PXC99_001575"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HDL5418020.1"
                     /translation="MLTIHHTSEHSLLCLAEPPAELAKQQQIWRVAEQARALDGVLEV
                     VVGMNNFTLFHAIGTDSTRLIQAVQQLWENDQAQAAQSPRLIEIPVHYGGEFGEDLFE
                     VAQFHNTTPEEIIRRHTEPTYTVFMIGFQPGFPYLNGLPQNLHTPRRNVPRTKVPAGS
                     VGIGGRQTGIYPFTSPGGWQLLGRTELPLFDIQHNPPTLLTAGDNVRFVAESITL"
     gene            complement(11509..12333)
                     /locus_tag="PXC99_001576"
     CDS             complement(11509..12333)
                     /locus_tag="PXC99_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HDL5418021.1"
                     /translation="MKKLLLFLLFIGNPIFAKSPELMLVEQYQDQDISGWVMSEKLDG
                     VRGFWDGQQLISRQGYPLNPPDYFIQDFPPFAIDGELFSERGKFEEISSIVRSAQPKG
                     WHKLKLQVFDVPNAQGNLIERLATLENYLKQHPTLHIAIIEQIPIKDKAHLQQFYQSV
                     LEQGGEGVIVRNPNAGYIQGRSAQILKIKPVLDEECTVVAHHKGKGKYTDKLGAITCE
                     NQRGRFRIGSGFKDKERENPPPIGSIITYKYRGVTESGKPRFATFWRIRNDQISEN"
     gene            complement(12467..13291)
                     /locus_tag="PXC99_001577"
     CDS             complement(12467..13291)
                     /locus_tag="PXC99_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418022.1"
                     /translation="MEHFIGLGVAGNFAGHLEQAGEEADFAKVKTVEAVQPKAIFPFY
                     VPAENLGDYQFLSTYPLSNTAINFPSDADNLQIEPEVALICEIGYQDQQVVSLTPTHF
                     AAYNDCSIRRPNANKICEKKNWGASSKGLSAIHLPLDNFNKGGTLDNYNIACFHKRNG
                     ELNTYGIDSPAVEYSYFHQKLLDWIVERMNNQPDEGPMNNISEMLKQANYPTKAIISI
                     GATRYTPFGESNLLQVGDVSMVVVYNVKKYSHSQIEEMAKLETFSEDISALIQTVR"
BASE COUNT         3667 a         2990 c         3022 g         3768 t
ORIGIN      
        1 ctatgcgttt aattccgtta gaaactgatc acgatgtgag tgtttgggct gctcgttata
       61 ttgttgatcg tatcaatgca ttccaaccaa ccaaagaaaa accttttgtg cttggcttac
      121 caaccggcgg tacgcctgaa aaaacctata aagaattaat taaattatat caagctggtg
      181 aagtgagctt taaaaatgtg gtgactttca atatggacga atacgtcggc ttacctaagg
      241 aacaccctga aagctaccac agttttatgt tcaagcactt ttttgaccac gttgatattc
      301 cgcttgagaa tatcaatatc ctcaacggta tggcggaaga cgtgaatgca gaatgcgaac
      361 gttatgaaga aaaaatccgt ttttatggta aaatccatct gtttatgggc ggggtcggtg
      421 tggatgggca tattgcgttt aatgagcctg catcttcgct ttcttcccgc actcgaatta
      481 aaacgcttac cgaagatact cgcattgcaa actcacgttt ctttaacaat gacgtaagcc
      541 aagtgccgaa atttgcttta accgttgggg ttggtacgtt gcttgatgcc gaagaagtga
      601 tgatcttagt gaccggccat aacaaagcct tagcattaca ggcgtgtgtg gaaggggcgg
      661 taaatcatct ttggaccatc agttgcttac aattacatcg ccgtggtata gtggtgtgtg
      721 atgagccggc aacccaagag ctgaaagtta aaacagttaa gtatttcaaa gagttagaga
      781 aaaacgtagc tcgctaattc tgattttaca agcggttaat tttgtaatat tttttacaaa
      841 aacgaccgcc tgttagcatt taaagagaag agagaaaatg aaccattatg ccttaacaaa
      901 ctgtgtgatt tacaccggtg aacaagtgct ttaccaacac gcattagtgg tgaaagaaga
      961 taaaatcgac tccattgttt tggaagaaaa tttaccgctg gatctgcaaa aaatcgacct
     1021 aaaaggagcg aatctttcag ccggttttat tgacttgcaa ctgaacggct gcggtggggt
     1081 gatgtttaat gaagaaatca ctacccgcac tttagaaatt atgcaggaaa ccaatctgcg
     1141 ttcaggcaca accagctatt taccgacttt tattacctcg cctgatgagg gagtgaaaca
     1201 agcggtggcg gtaatgcgtg agtatttgtc gaaacacaaa aaccaagcac tcggcttgca
     1261 tttggaagga ccttatctaa gtgtggcaaa gaaaggagta caccgtccgg aatttatccg
     1321 tgaaatcagc cctgaaatgt tagatttctt atgcgataac ggcgatgtaa ttacgaaaat
     1381 cacgattgca gcagaaaacc cgaccgcaga ccatatcaaa cgctttaatg atgcaggaat
     1441 tattgtatct atcgggcatt ccaatgccac ttttgctcaa accaaacagc gaattgccga
     1501 aggggcagcg tttgctacgc atttacacaa tgcaatgtcg ccggtcagca acgggcgtga
     1561 aggcggtgta gtaggggcgg tgttggatag cgatatttac accggcatta tttgcgatgg
     1621 cttgcacgtt gaatggggca acattcgcat tgccaaaaaa gccaaaggcg ataaattagt
     1681 gattgtcagc gatgctgttg ctgccgcagg aagtgatatt gagtcgttta tttttgtcgg
     1741 taaaaaagtc acggtgaaag atggcaaatg ctacgatgaa ttcggagcat tgggcggtgc
     1801 ggcaatcacg atgatcgaat ccattcgcaa cgtagtgcaa cattgcgata ttagcctgaa
     1861 tgaagcaatc cgaatgagta ccctttaccc ggcaaaagcg attggggtag aggaaacact
     1921 cggctcactt gaagccggca aaattgccaa ccttgcgatt ttcgataatc aatttgaagt
     1981 aaaagcgact gctgtaaacg ggcaattaca gtggcattaa ttttgctaca aattctaagc
     2041 ataacagcat ataatccaaa ggcaggcatt gtgtctgcct tttatttata gggagaataa
     2101 catgcaattt aaagattact tagccacttt tccaactatt gatcatctag ccggcttaaa
     2161 cgtgataaat agcggtgaag tgattcaaca tattcctgcg attgaaggta aattaggttc
     2221 actaaaactt tacaatgcac tgtttgcgaa atttgatggg aaattaaccg ctagtgcagc
     2281 aaaacaaggg ttggaatggt ttgccgaaca cgttgaagat gcgaaaaata atgtgggtaa
     2341 gcacccgaat attgatctat tatttagggt aattgagcaa gatttatctt taagtttaga
     2401 gccgattgtt aaataagatt gcactagtga aaaataacaa gcggtcatta tctgcaaaat
     2461 ttttgcaaat aatgactgct tgtgtttaag aggcttattt cacggtaatg cgtgcaaatt
     2521 tgcgtttgcc gacttggtaa acaaaagtgc ctttttgagc agtttgtttc acatcttcca
     2581 ctttttcacc atcaatttta accccgcctt gttgggctga gcgaattgcc tctgaagtgg
     2641 acggtactaa gccggcttct ttcagtagag ccgctaggcc gatttcaccc tcaaaggtaa
     2701 attcaggcac ttcatcagga attgcccctt tttggaaacg gttgataaac tcttgctctg
     2761 ctgcatctgc tgccgcttca tcgtggaaac gagcgataat ttcttttgcc agtagaattt
     2821 tcacatcacg cgggtttttg ccattttcaa catccgcttt taattgtgca atttcgtcta
     2881 atggacggaa tgagagcagg ttgtaccaat cccacattaa atcgtctgaa atcgacataa
     2941 ttttgccgaa catttcgctt ggagcttcag ttacaccaat gtagttgccg agagatttcg
     3001 acattttttt ctcgccgtct aagccgacaa gtagtgggag tgtcattgcc acttgtggtt
     3061 tttgaccggc tgatttttgt aactcacgtc caactaacaa gttaaaggtt tggtctgtac
     3121 cacctaattc cacgtcagct ttcagttcta ccgagtcgtg accttgtagt agcggataaa
     3181 taaattcgtg gattgcgatc ggttgttggt tcgtgaaacg gtttttgaaa tcttcacgtt
     3241 ctaacattcg agcaacggtg tagttggagg ctaagcggat cataccttcc gtacctaact
     3301 tgcctaacca ttcggagttg aatacgatct tggttttttg tggatctaaa attttgaaga
     3361 tctgctcttt ataggtttcg gcattgcgta acacgtcttc acggctaagt ggcggacggg
     3421 tagagttttt tcctgatgga tcgcctacca taccggtgaa atcaccgatt aagaaataga
     3481 cttcgtgtcc gaattgttgg aattgacgaa gtttgttcag cacaacagta tgacctaagt
     3541 gaatatccgg tgcagttggg tctgccccta atttaatacg caatgggcgg ttttctttta
     3601 atttggtgat taaatcttct tctgaataaa tattttccac gccacgttta agttcggcaa
     3661 ggactgattc gatagcttga gtcatttatc ttccttttag tcttgaatat aaaaaatgga
     3721 tctattatag cggtatgaat tgaaattgat aggctatagg cgaaaaaaaa cgccgtattt
     3781 tgtgggggaa tacggcgtaa agagttggag tgattaccta ttatttttga agtgatttaa
     3841 tgataatgat tatcatctgt taagtcaata ctttttttga aaattttcaa taagaattat
     3901 tctcatcaat taagtaagat ggatactacg gcaattagtg aagaatgtac agcggaattt
     3961 tcgtattgta agagtgttgg taagcggtat ttttagaaaa aacctccgag agcggttatt
     4021 tttcggaggt tttttgcaaa tgaggattta catcgttgaa atgtatttca acatcacccc
     4081 cgctgcaatc gcagagccaa tcacgccggc aacgtttggg cccattgcgt gcattaacaa
     4141 gaagttttgt ttatcgtact cttgtccgac tttgtttgat acccgtgcag ccatcggcac
     4201 ggcagaaaca cccgctgagc cgataagtgg gttgattttg tgctgactaa agcggttcat
     4261 tattttcgcc ataatcacac cgcttgcagt gccgatccca aaggcaatca cgcccaatac
     4321 taaaatgcct agtgtttgcg gttgtaagaa tttgtctgcg accaattttg cccccaccga
     4381 taaccctaag aaaatcgtca cgatattgat taacgcattt tgggcggtgt cgtttaagcg
     4441 ttctactacg ccactggttc gcagtaagtt gccaaagcag aacattccca ataacggtgc
     4501 agcatccggc agtaagagtg ccactaataa tagcaacacg atagggaaaa taattttctc
     4561 acggttgctt acattacgga gctgaaccat tcggatttta cgttcttgct cggtggttaa
     4621 ggctttcata atcggcggct gaatcagtgg cactaacgcc atataagaat aagccgctac
     4681 cgcaatcgca cctaataatt caggggcaag tttgctggca agataaatcg cggtcgggcc
     4741 atctgccccg ccgataatcc caatcgcagc ggcttgtggc aatgtgaagt cgataatgcc
     4801 taaccagttt agccctaatg cacccagtac ggtagcaaaa atcccaaatt gagccgcagc
     4861 cccaagcatt aacattcgag ggttggcaag taaagggccg aaatcagtca tcgccccgac
     4921 acccataaag ataataagcg gagcaacgcc gtagccgata gcaactttat agaataatgc
     4981 caacacaccg gcggtatagc ccatatcgcc agccattact tcaagctcat tttgaacaga
     5041 gggagcagcc agtgcgatgg catctttaat cgaatgcaga tcaaggcttg tactatttac
     5101 cttagcagca ataattgcca gttgctcggc agaaccgctg tggagtaaat tgtctaatgc
     5161 cgtcattgcc atacctgctt ccggaatgtt tgacatcaaa ccaccaaagc caataggcag
     5221 tagtaaaagc ggttcgaatt ttcgggcgat ggcaagccaa agcaacacta aactgatgac
     5281 aatcataatc gcttgcccca gttctaaatg cattagcccc atacctttaa aaagtgcaat
     5341 aatactttcc ataccggact cctaggcaat actcattaaa gtatcattta ccgccacaac
     5401 atcgccttgt ttgacattaa tgccttgaat cgtgccggat tttgccgcac aaatttgggt
     5461 ttccattttc attgcttcaa gaatcagtaa cacatcgcct tcagcaactt gttgcccctc
     5521 tttcacttcc actttcaaaa tgttccctgc cattggagca ttcaccggtt cggcattggc
     5581 tgatagcgta tttgcagatt ttggtgcaga atcgaccgct tgcggagccg gtgttgctgg
     5641 tgttggagcg atattggtta tatcgccacc ttcactcacc ttcaccacaa aggctttgcc
     5701 ttcaagctca acggtataaa tggctgaacc ggattgtgtt tgggcttttg gtgcagaagc
     5761 agcggaggct tgtgccggtt ttgcttcatc agcacttggc actggctcaa aggcagacgg
     5821 attattgcgg ttttccaaat atttccagcc cacttgttgg aagagtgcca caatcaatac
     5881 atcatcaatc atgttttcag atagcgtaat gcctttttct tttgcacttg cagtcacttc
     5941 tgccactaat ttttccagtt ccggcggaag atgatcggct gggcggtcgg taatcggctc
     6001 tgctccctca agcactctgt cttgcaaggc tttgtttacc ggtgccggtg tgcgaccata
     6061 ttcgcctttt aaaatacctg cagtttcttt ggcgatagtt ttataacgtt cgcccattaa
     6121 tacgttcatc accgcttgtg tgccgacaat ttgtgaggtt ggtgtcacca acggaatatt
     6181 gcctaaatct tcacgcacac gaggaatttc ttgtaaaacc aagtctaatt tatccgacgc
     6241 attttgttgc ttgagttggc tttcgaggtt ggtcagcatg ccacccggca cttgggcaac
     6301 caaaatacgg ctatctatac cacggagctg tccttcaaat tttgcatatt ttttacgcac
     6361 gttacggaag taggcagaga ttttctccag agctggaatg ctcaagccgg tttcatacgg
     6421 cgtgccttga agtgtggcga caatagactc ggttgccggg tgaccgtaag tgccggacat
     6481 tgatgaaatg gaggtatcga caccatcgac accggcttca atcgctttga gcaacgccat
     6541 ttcagccata ccggtggttg aatggcaatg gagatgtagc tcaacgtcgt agcgtttttt
     6601 aatttcgctg actaattcat aggctgccat tggggttaaa atgcccgaca tatctttgat
     6661 caccaacgaa tccacgccaa tttccaataa ttgctcggtt acatccaacc acgtttgtag
     6721 ggtatgaaca gggctggtgg tgtaactcaa agtaccttgt gcgtgcccgc cgtgtttttt
     6781 gaccgcttgt aatgcggctt gcatattgcg agggtcgttg agggcatcaa atacacggaa
     6841 cacactcata ccgtttgcca ccgaacgctc gacaaattta tctaccacat cgtcggcata
     6901 atgacgataa cccaataagt tttgcccacg tagcagcatt tgcattgggg ttttcggcat
     6961 tgcttttttc agctcacgta aacgcaccca cggatcttcg cctaaaaaac gaatacaact
     7021 gtcaaaagtt gccccgcccc aagtttctaa cgaccaatag ccgatattat ccagctcgga
     7081 ggcaatcggt aacatatcgt ctaagcgtaa acgagtcgca aaaagggatt ggtgtgcatc
     7141 acgcaaaacc acatcggtaa tcgcaatttt tttcggttga gttgtcataa tcaaattcct
     7201 tctaattatt ttatttttga aatcttgtta atgttgcccg ttaattcgac gatgatgagc
     7261 aatcgcagcg gcaatcacag ggcgtaaacg ctctaaatca tctgggggag attgaggcac
     7321 agttttagag gctggaatag aaacaggttc ggggaaatat tgattgataa tcttggaaat
     7381 aaagctgatg gcataaatta aaaccagcag gaacagcata acaaatccca ttccggctac
     7441 cattaaattt ataccttccg caaagagttc tgcaggtgcc ataatttatc cttaaaatgt
     7501 agaaatgatg aagaaaatgt agaaaaaatt cagatttatt tcaaattatt tagcctcaaa
     7561 atgagtggta gatcacaaac tttaaacgca agcggtcaga ttttacaaat tttttacaag
     7621 agtagttaaa atttgcaaaa cctgacctta ggttagcttg aagctaagtc gttatgccat
     7681 tagccccgaa atatattttg aaagggtcat tgcacttagc accgccatta gaatcaccac
     7741 aatcgcccct gaaacggtca tccacacagg gtgtttgtag tcgcccacaa tcttggtttt
     7801 gtgagctgcc agcagaatta acccgaggga aatcggtaga attaagccgt taagcgtccc
     7861 tacaaacacc aagacttgtg ccggtctgcc gatggttgcc agcacggcgg ttgaaaccac
     7921 aataaaggcg acaatgaaac agtttttgtg tttttcgata aatggcgaga atgaagtaat
     7981 gaaggaaacc gaggtataag ccgccccaat cacagaggta atggaggctg cccaaatcac
     8041 cacgccgaag atcatcaaac cgacatcgcc ggcaacgtgg gcaaatgggg tagccgcagg
     8101 gtttttcgga tcaagttgca cgcccattga caccacgccc agcaccgcta aaaacagtac
     8161 cacacgcata attgaggcga ttaaaatggc tgacaccgag cttttgctca cctcttttaa
     8221 attctctttg cctttaatgc ctgcatcaag caaacggtgc gcaccagcaa aggtgatgta
     8281 tccaccaaca gttccgccca ctagcgtgac aatcgcaatc acgtctaatt tttccggcac
     8341 aaaggtatgc accaccgcat cgtcgattgg cagattggct tttacggcaa cgaagatggt
     8401 taaagcaatc atcacaaagc ccataatttg tgcaaatctg tccatcactt taccagcttc
     8461 atggaacagg aacacgccca cggcaatcgc accgctgacc accgcaccca tttcagggga
     8521 aagtccggtg agaatgttta gccctaaacc tgcaccgccc acgttgccga tattaaaggc
     8581 taaaccgccc atcacgataa gcagagccag aaagtaacct gcccccggca atacggcatt
     8641 ggcgatgtct tgagctttct tttccgatac tgctacaatt cgccaaatat tcagttgagc
     8701 accgatatca agcaagatcg agagtaagat cacaaagccg aagctggcaa gtagggtttg
     8761 ggtgaaggtg gctgtttggg ttaagaaccc cggcccgatg gcggaggtcg ccattaaaaa
     8821 tgctgccccg agtagggcgc tacggttgtt gtttgacatt gtgttggttc cttttttgtt
     8881 gttaatgagt cattattcgt ggatttatca tggtaatatt cccctcttta gcaaagaggg
     8941 gttaggggag atttggcagt agaactcatc gaagtgagag agttaataat gctcaattta
     9001 acctcttgaa attacttatt ttctccgtaa atcgcttctg tcaaatctcc cccagcccct
     9061 cttttctaaa gaggggagtt cgatctccaa gagttttatt tctggttttc cgtccatttt
     9121 gactaaaaca ggatcaggct ttcaccaaaa tcccctttgc ctgtaactct tttttaattc
     9181 gctcggcaaa taccacggcg tgttcgccgt caccgtgtaa gcaaatgctg tcggctttaa
     9241 tcgccacatt accaccatca acggttggta cagtgccgtc taacaccatt tgcaagactt
     9301 ggctgatcgc ttcatcatcg ctttctacca ttgcatcatc acgggtgcga ggcacgagcg
     9361 agccgtcagc taaatagtgg cggtcggcaa agacttcgga aatggtttcc aaaccgtgct
     9421 gctcggcaat gctcaacatc aggctgccgg ataagcccat cagtttgagg ttgggatcga
     9481 actgtttgac cgtattggcg ataagggtgg caaggtgagg gtctttggcg gccatattgt
     9541 ataaagcgcc gtgcggttta acgtagctca tcggcatatt ttccgcatca cataaggctt
     9601 tggcggctcc cagttggtag agcagacagg ctttaagttc atcatcgggc agttgcatat
     9661 tggtacgccc aaagttttcc ctatctggaa aactcgggtg agcgccaact cgcacgctgt
     9721 tttccttcgc ccagttaatc gctttacgca tttcattgta atcaccggcg tgcaagccac
     9781 agcagacatt cgccgaagta acgagctgta ataatgaatg atcgttgcca caaccttcgg
     9841 caagatcgac atttaaatca acgtgattca ttcgcttttc tccgaattgt ttccaaataa
     9901 ttttgatctt tttgataaat ttcgaccgct tgttcacggc ttacttgctc aaattgcacc
     9961 gttgagccga acggattttg tgccaaccgc ccgagatcgg cctgaataat gcaggcaatt
    10021 ttcggataac caccggtggt ttgggcatct gccatcagca caatcggctg gccgtccggc
    10081 ggcacttgca ccgtaccact cggggctgcg taggagagca tttcaaggga agcggtcaat
    10141 tccaacgctt tttctgcaaa acggtagccc atacggttgc tgttgttttg cagttgccac
    10201 ccttgttgcc aaaagcgttc acggctatct gcggtaaagg cttcatattc gctcgaagcg
    10261 gttgcccgaa tgcgtgaggt gaaatcaatc ggctcaatcg acatcaaaga aagtcggctg
    10321 tctctgcggc ctgtggcgat gttatcgccg gcttttaaca ttctgccttg aaaaccgcca
    10381 aattgagctt tgagagcggt acttgccgaa cctaacacct gcggcaccag aaaaccgcct
    10441 gccacgcata aataggcgta attgccgaga acaatccgtt ttatcgtcag cgtttgacgg
    10501 gcgttggcag tgtagcggta ataggaaaaa accggcgtgc cgtccagctc cgcctccacc
    10561 aatgcaccgg tgaggcaaaa tggcgtgtcg caatcacgcc aagggtaagt tcaatcgcag
    10621 gtgcattatt tgcatttttt aacaataaat tacccgcttg taaggcaagg ctgtccatcg
    10681 caccgccgtg gctcacgcct aaatggcgat aaccataacg ccctaaatct tgaatgtggg
    10741 caaaaccctg tattatttcg atataaatca tagcgttata ctctccgcca caaatctaac
    10801 attatcgccg gctgtaagta gcgttggcgg attgtgttga atatcaaaca acggtaactc
    10861 ggttcgtcct aacagttgcc agccacctgg tgaggtaaag ggataaatgc ctgtttgcct
    10921 gccgccgatg ccgaccgaac cggcagggac tttggtgcga ggcacgtttc ggcgtggggt
    10981 gtgtaaattt tgcggtaagc cgttgaggta aggaaagccg ggttgaaagc cgatcataaa
    11041 cacggtgtaa gtcggttcgg tatgacggcg gataatctct tcgggagtgg tattgtggaa
    11101 ttgggcgact tcaaacagat cttcgccaaa ttcaccgccg taatggacag ggatttcaat
    11161 caggcgtggg gattgtgcgg cttgggcttg gtcgttttcc cagagttgtt gaaccgcttg
    11221 gataaggcgt gtgctatcgg tgccaatggc gtgaaatagg gtaaaattgt tcattcctac
    11281 caccacttcc aacacgccat ctaaggctct tgcctgttct gccacccgcc aaatctgttg
    11341 ctgtttggca agctctgcag gcggttcggc taagcagagc agggaatgtt cgctggtatg
    11401 atgaatcgtc agcataattg ccctcaaatt gttacaaaaa ggtaacaact ttttacgctg
    11461 atatatccag actgtcaatt ttattttgtt gaaaatgtga aatagctctt aattttcaga
    11521 aatttgatca tttcttattc gccaaaacgt tgcaaatctg ggcttgcctg attctgtgac
    11581 acctcgatat ttataggtaa tgattgagcc aatcggtggc ggattttctc gttctttatc
    11641 tttaaaaccg ctgccaatcc gaaaacgtcc acgttgattt tcacaagtga ttgccccgag
    11701 tttatcggta tatttccctt tgcctttatg atgggcaacc acagtgcatt cctcatctaa
    11761 aaccggtttg attttcaaaa tttgggcaga acgaccttga atatagcctg cattcgggtt
    11821 gcgaacgata accccttcgc caccttgttc cagcacagat tggtaaaatt gttgaaggtg
    11881 ggctttatct ttaatcggaa tttgctcaat aatagcgata tggagcgttg gatgttgctt
    11941 cagataattc tctaaggtcg ccagccgttc aatcaaattc ccttgtgcat ttggcacatc
    12001 gaacacctgt aatttcagct tgtgccaacc tttgggctga gcggaacgca caatgcttga
    12061 aatttcctca aatttgcccc gttcgctaaa cagttcgccg tcaatcgcaa aaggagggaa
    12121 atcttgaata aaatagtcgg gtggattgag cggataacct tggcggctga tgagctgttg
    12181 accgtcccaa aagcctcgca cgccatcgag tttttctgac attacccagc cactgatgtc
    12241 ttgatcttga tattgctcaa cgagcattaa ctcgggcgat ttggcaaaaa tagggttacc
    12301 aatgaagagt aggaataaga gcagtttttt catagtctct ccgaaatagt gcctccgaat
    12361 atgcaaggca ctataaagga aagcgtgcaa acagtcagaa atgaatctca atttttcgac
    12421 gcagatcgca aaattttccg aaaaactgat cgcttgagtg agaaatttaa cgtactgttt
    12481 gaattaaagc agaaatatcc tcgctaaagg tttccaactt cgccatttct tcaatttggc
    12541 tatgagaata tttcttcaca ttgtaaacga ccaccatact tacatcacct acttgcaata
    12601 aattactttc gccaaaaggc gtgtagcgtg ttgccccaat gctgataatc gctttagttg
    12661 ggtagtttgc ctgttttaac atttcggaaa tgttgttcat cggaccttca tcgggctgat
    12721 tattcattct ctctacaatc caatcgagca atttttgatg gaaatagctg tactccaccg
    12781 cagggctgtc gatgccgtag gtattcagct cgccattacg tttatggaaa caagcgatgt
    12841 tgtaattatc cagcgtgccg cctttgttga agttatctaa cggaagatga attgccgaaa
    12901 gccctttaga cgaagccccc cagtttttct tttcacagat tttattcgca ttcggacggc
    12961 ggatagagca gtcattgtaa gccgcaaaat gggttggcgt gagcgaaacc acttgctgat
    13021 cttggtagcc aatttcacaa attaacgcca cttcaggctc aatttgcaga ttatcagcat
    13081 cactcgggaa attaatcgca gtatttgaaa gcggataggt ggataaaaac tgataatccc
    13141 ccaaattttc cgccggcaca taaaacggga aaatcgcctt tggctgcact gcttccactg
    13201 ttttcacttt cgcaaaatcc gcctcctctc cggcttgttc taaatgtcca gcaaaattgc
    13261 cggccacgcc taaaccgata aagtgttcca taatctactc cttaattggt aaaagttgga
    13321 taaaatttta ccgcttgtaa ccaaaaattg cgaatgttta ttttgatctg attgatagaa
    13381 aattattgaa ttgagattaa atttagccat attttgaaca taaaattagc gctttgttat
    13441 aaaaaca
//
LOCUS       DANLVT010000065        13317 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.065, whole genome shotgun sequence.
ACCESSION   DANLVT010000065 DANLVT010000000
VERSION     DANLVT010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13317)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13317)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13317
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.065"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..605
                     /locus_tag="PXC99_001578"
     CDS             <1..605
                     /locus_tag="PXC99_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418023.1"
                     /translation="LCVGLISGRTFLLMSVISIALYFKWKYILPLIAFTALILFLAIV
                     FPENRYVEHALEPVINLLSGTGKVSSSTDNLVKNHLFLPTLNQFISGDGLYYTETGGY
                     YGGSDSGYIRQVLYGGVSYMLACFAFTYYFVRKVAVNWFEGSWIFTLSTIGILAILNI
                     KADTFAFPGLMMLFLMFLSLFGTSGRNVTFFCKNKEAEYV"
     gene            598..1563
                     /locus_tag="PXC99_001579"
     CDS             598..1563
                     /locus_tag="PXC99_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005578999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDL5418024.1"
                     /translation="MFSIIVPSYNRNQEINALLESLKQQTAYNFEVIIVDDCSKIPVS
                     ETLGILNEFNDISTKEKVRELLTRDSLSHIYSYPFDVKVVRNNPNVGAAQSRNVGATN
                     ATQEWLLFLDDDDRFMPEKCERLAAEIANNPTANFVYHPAKCEMVNEGFTYVTKPFKH
                     KSELTKENILKANKIGGMPMIGLKKSLFCKIGGLSDRLRSLEDYDFLLKLLEEPSFEP
                     LYVDEALTYCTFHTKRSSVSTDTTNTEKAIEYIQQTYIKTPEANNFKLNSLYILSYPH
                     VMNLSRKAAGYYFEMFKQTKNIKQLIIALVIFISPKLAINLKRFM"
     gene            1563..2363
                     /locus_tag="PXC99_001580"
     CDS             1563..2363
                     /locus_tag="PXC99_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_162680708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL5418025.1"
                     /translation="MKFSVLMSLYIKEQPQYLRECFESLKVQTVQADEIVVCFDGAVT
                     PELEAIVEEYSAILPINAVKFPQNRGLGKTLNDGLTYCKNEWVFRMDTDDICMPERFE
                     KQVAFIEQNPETVIFGGQIAEFGQDIHDLVAYRNVPTTVEEIVRFTRLRCPFNHMTVA
                     YQKSKVLEVGGYQDLQEDYYLWIKLIAQFKQVANLPDLLVYARVGNGMVGRRRGMAQA
                     EAEWRLYKLKNRCQIHDPISGFGIFIMRAIPRLLPVSALKKVYGLLRK"
     gene            complement(2400..2906)
                     /gene="msrA"
                     /locus_tag="PXC99_001581"
     CDS             complement(2400..2906)
                     /gene="msrA"
                     /locus_tag="PXC99_001581"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDL5418026.1"
                     /translation="MQNIREIYLAGGCFWGVESFMQRIKGVIKAQSGYANGNTDNPSY
                     QEVCAGSGHAEVVKVTYDANQISLAKLLDYFFKVIDPVSINKQGGDIGIQYRTGIYYT
                     DPQDEPVVTAALAQLQTQFDQPLAVENQMLEQYFPAEEYHQEYLVKNPNGYCHIDIQL
                     MNEILKNQ"
     gene            3087..4349
                     /locus_tag="PXC99_001582"
     CDS             3087..4349
                     /locus_tag="PXC99_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HDL5418027.1"
                     /translation="MGTLNSFLGIIVLLFIAFLFSSNKRAINVRTVLGALALQVAIGA
                     LVLYVPAGRDALNAMATGVSKVISYGNEGISFLFGGLVSDKMFEVFGGGGFVFAFRVL
                     PVIIFFSALISLLYYIGVMQWVIRILGGLLQKALGTSKAESMSAAANIFVGQTEAPLV
                     VKPYISKMTESELFAIMAGGLASIAGSVMAGYAGMGVPLTYLIAASFMAAPAGLLFAK
                     IMVPQTEKFRDELEAVDLEKPANILDAAASGASSGMQLALNVGAMLIAFVALIALVNG
                     ILGGIGGWFGYDTLNLGQIFGWVFKPLAWVIGVPWEEAEIAGQMIGLKLAVNEFVGYL
                     EFAKYLAPESTVHLTDKTVAIITFALCGFANFSSIAILIGGIGAMAPSRRGDIARLGI
                     KAVIAGSLANLMSATIAGLFIGLGGAVL"
     gene            4494..5270
                     /gene="deoC"
                     /locus_tag="PXC99_001583"
     CDS             4494..5270
                     /gene="deoC"
                     /locus_tag="PXC99_001583"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HDL5418028.1"
                     /translation="MNLKKSAEIALSLMDLTTLNDNDTDEKVIALCQQANTKFGTPAA
                     ICIYPRFIPIARKALKQQGIEQVKIATVTNFPHGNDDIEIAVAETKAAVAYGADEVDV
                     VFPYKALIAGNEQIGFDLVKQCKAVCAANNVLLKVIIETGELKSAELIRKASEISIQA
                     GADFIKTSTGKVAVNATLESARIMLETIRDLGVADRVGFKAAGGVKTSEEAAQYLALA
                     ESILGNDWVSASHFRFGASSLLANLLATLNDEQQQAVQGY"
     gene            5291..6010
                     /gene="deoD"
                     /locus_tag="PXC99_001584"
     CDS             5291..6010
                     /gene="deoD"
                     /locus_tag="PXC99_001584"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HDL5418029.1"
                     /translation="MATPHINAPEGAFADVVIMPGDPLRAKYIAETFLEDAKEVTNVR
                     NMLGYTGTYKGRRISVMGHGMGIPSCSIYAKELITEYGVKKIIRVGSCGAVRNDVKVR
                     DIVIGVGACTDSKVNRIRFRDNDFAAIADFDMTLAAHQAAKAKGIEARFGNLFSADLF
                     YSPDVEMFDVMEKYGILGVEMEAAGIYAVAAEYGAKALAICTVSDHIRTGEQTTSEER
                     QLTFNGMIEIALESVLIGDKQ"
     gene            complement(6086..6937)
                     /locus_tag="PXC99_001585"
     CDS             complement(6086..6937)
                     /locus_tag="PXC99_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HDL5418030.1"
                     /translation="MQTHRAIIESIFALAPKNELWATPISGLTVHAADRSIRFNGYIQ
                     DPSLCVVLLGERQICTNGHCQVFGNQEMMFCPVNLPIVTQTLSVAENQPYLAISLRLD
                     FDLIAKIITQLPPQKISENINQRTKWELENEIKDCLLRLLNLLNSPNHIHFLAPLILN
                     ELYFYLLQSEQGGYIRSLLSQDGNIAKIANATKILERKFADTLNMSALAEEVGMSVAG
                     FYAHFKSVTSMTPLQYQKSLRLNAAREKLQAGVSVSETAYQVGYESPSQFSREYKRQF
                     GESPKGR"
     gene            7052..7483
                     /locus_tag="PXC99_001586"
     CDS             7052..7483
                     /locus_tag="PXC99_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organic hydroperoxide resistance protein"
                     /protein_id="HDL5418031.1"
                     /translation="MKIFYHTSATATGGRDGRTQVDDGSIGFDLVGFQNESGKVGTNP
                     EQLFAMGYAACFDSAMNHVAPTLGIKPTKSSTTVAVGIGQKADGAFGLDLDITITVEG
                     ISAEEAKTLISKAHEVCPYSNATRGNVDVRLHVKVVSEFDL"
     gene            7500..8180
                     /locus_tag="PXC99_001587"
     CDS             7500..8180
                     /locus_tag="PXC99_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase"
                     /protein_id="HDL5418032.1"
                     /translation="MKMLDFETTVKTRQSIRKFLPLPMTETEIKQILADAQNAPSACN
                     TQPWLVHVASGETLARLKARFKKTFEAGINDADFEFNQTKFTGDYEPRWRNQYSHVFT
                     TSYGIPREDKAGRQVVYDDNIVGYGAPHMAFLFMPSIDGHDVNIASDVGMYSQTFLLS
                     LTARGFGGIPQLALAMFAKDVREELGIPEHYKLLHAISFGHPDWDAMQNKHHLGRVPV
                     EESATLHW"
     gene            8244..9368
                     /locus_tag="PXC99_001588"
     CDS             8244..9368
                     /locus_tag="PXC99_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-dependent flavin oxidoreductase"
                     /protein_id="HDL5418033.1"
                     /translation="MINLFTPYTLNNDVEIKNRLVVAPMTHSASNDDGTISEQERHFL
                     HNRAADMGLFITAATGVMRNGKAFYGQPEALDERYLASLTETANILKNQGTKAILQIF
                     HGGAQAIPALLDGANAVAPSEHANGAKALTADEVKQMIQAFANATDLAIQAGFDGVEI
                     HGANGYLIQQFFSTEFNQRTDEWGGSLEKRLRFPLAVVEAAVSVREKHQRPDFIIGYR
                     FSPEEPGEHGLTMTDTYALIDALCEKPLQYLHISLWDFGKKARRGADTNFTRMQLVHQ
                     HINGRLPLIGVGNLLTGEQIRKAYATGWAEFIALGKAVMLNPNVATLLKDNRDSEIVS
                     ELDPQQADHYGIPDRLWGYCVQGGAWLPPLKGQNGQPMDI"
     gene            9452..10069
                     /locus_tag="PXC99_001589"
     CDS             9452..10069
                     /locus_tag="PXC99_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HDL5418034.1"
                     /translation="MITLHYLNSSCSHRIVWLLEALGLDYELKIYHREESGFAPMEVK
                     ALHPLGKAPVLQDGDLVLAEGNAIIQHLIARYAEGKFEPTRGSEAYSMYHYWLSISAS
                     LFSANLVTMLANRSDLGAFGDYAKAQTPLYFNHIEQTLSDKKWIVGDELTGADFSLCF
                     PLQWGRNFVEMANYPNIARYLEQVENHPAYQKANQKALKLDMNRF"
     gene            10212..11153
                     /gene="argC"
                     /locus_tag="PXC99_001590"
     CDS             10212..11153
                     /gene="argC"
                     /locus_tag="PXC99_001590"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HDL5418035.1"
                     /translation="MSKYKIFVDGAVGTTGLRIHERLSQADDIELLTLPEEQRKDLNA
                     RVAKVAEADLTFLCLPDEASKELVANAPENTRICDTSTAHRVNPNWVYGFPELSGQRE
                     KIQNAKRVAVPGCHATGYIALVRPLVEKGILPADYPLSCHSLTGYSGGGKAMIADYEN
                     ENSPNAFNAPRVYGLTLQHKHLPEMQAVTQMQNPPIFTPVVADYYSGMLVTVPLQIFA
                     LQAVKSGEEIANLLADYYQTSRLIHVHPFQSLPEDGMLAANAYAGKDSLEIFIYGNST
                     QLLLAARFDNLGKGASGAAVQCMNIMLGRDEVEGLEL"
     gene            11245..12099
                     /gene="argB"
                     /locus_tag="PXC99_001591"
     CDS             11245..12099
                     /gene="argB"
                     /locus_tag="PXC99_001591"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HDL5418036.1"
                     /translation="MQQQEINQFANLLEKSTACLVKWQGKIIVVKYGGNAMINEELKK
                     SVMADLLLLHRLGVKVVLVHGGGLEISQGVKLLGKEPQFINGLRVTDSDTINVVLQML
                     AGKVNKSLVALLKGKGIGLCGIDGAMLQCKKLEAEVDYGFVGDIVKVDPTVIEIALNA
                     GLIPVVSTVGVDENGQAYNINADTAASEIAIALQAEKLVSMTDIAGLLRDRFDESTLI
                     PEVEVSEVQSLIEQGIIAGGMIPKIACCTDFIRAGGSEANIIDGRIDHAILVEMFGGK
                     NGTRFYKK"
     gene            12112..13296
                     /locus_tag="PXC99_001592"
     CDS             12112..13296
                     /locus_tag="PXC99_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HDL5418037.1"
                     /translation="MTSSNTIKQLDKDYIAQTYGRFDLALSHGKGCEVWDFEGNKYLD
                     FTSGIGVNSLGWADEDWLQAVTTQAGKLAHTSNLFFTEPASQLAQKLVAASGLKRAFF
                     CNSGAEANEGAIKTARKYSFDKYGSGRSTVLTLVNSFHGRTISTLASTGQEVFHKHFF
                     PFTEGFEYLPVNGIEALKARLETENVCGILLEVVQGEGGVCPLEADYLHAVQSLCQEK
                     DILFMIDEVQTGIGRTGTLFAYQQFDLTPGLVTLAKGLGGGLPIGAFLLGEKVEMTLG
                     KSDHGSTFGGNPVSCAAANVVIDKINAEFLAQVQQKGQLLQQRLASLPKVKSVSGLGL
                     MLGVEFEEGILAADIVAKCINKGVLFLTAKSKLRLLPPLMISEQQIEQGIRVLEDVLK
                     DS"
BASE COUNT         3828 a         2580 c         3027 g         3882 t
ORIGIN      
        1 tattatgtgt tggtttaatt tccggtagaa cctttttatt aatgtcagta ataagtattg
       61 cactctattt taaatggaaa tatatattgc cactgattgc cttcactgcg ttaattctat
      121 ttttggcgat tgtttttccg gaaaaccgtt atgttgaaca cgccttagaa ccggtaatta
      181 atttattgtc cggcaccgga aaagtcagct cttcaaccga taatttagtg aaaaaccatc
      241 tgtttttacc gactttaaat cagtttattt ccggtgatgg tttatattac accgaaactg
      301 gtggctatta tggtggatcg gattccggct atattcgcca agtattatat ggtggagtaa
      361 gttatatgtt ggcgtgtttt gccttcactt actattttgt acgcaaagtg gcggtgaatt
      421 ggtttgaagg cagttggatt tttaccttat ccaccatcgg cattttagct attttaaata
      481 ttaaagcaga tacctttgct ttcccggggc tgatgatgct gtttctaatg ttcttgtcgc
      541 tgtttggaac aagcggtcga aatgtaacat ttttttgcaa aaacaaagag gctgaatatg
      601 tttagtatta ttgtgccttc ttataaccgt aatcaagaaa tcaatgcgtt gcttgagagt
      661 ttaaagcaac aaactgcata taattttgaa gtgatcattg ttgatgactg ctcaaaaata
      721 ccggtcagtg aaactttagg aattttaaat gaatttaacg atatttctac taaagaaaaa
      781 gtaagagaat tacttactag agatagttta tctcatattt atagctatcc atttgatgtg
      841 aaagtggtgc gaaataaccc aaatgttggg gcggcacaaa gccgaaatgt aggggcaact
      901 aatgccacac aagaatggct actgttttta gatgatgatg accgctttat gcctgaaaaa
      961 tgcgaacgtt tagcggcaga gattgcgaac aatccaactg ccaattttgt gtaccacccg
     1021 gcaaaatgtg aaatggtaaa tgagggtttt acttatgtca ccaagccgtt taaacataaa
     1081 agtgagctaa ctaaagaaaa cattctaaaa gcgaataaaa ttggcggaat gccgatgatt
     1141 ggcttgaaaa aatcactctt ttgtaaaatt ggtggattat ctgaccgctt gcgatcactt
     1201 gaagattatg atttcttact gaaattattg gaagaaccga gttttgagcc attgtatgtg
     1261 gacgaagcct tgacctattg tactttccat accaaacgct ccagtgtttc aaccgatacc
     1321 actaatacag aaaaggctat tgagtatatt caacaaacgt atatcaaaac acctgaggcg
     1381 aataatttta agctcaattc gctttatatt ttaagttatc cacacgtaat gaatttatcc
     1441 cgcaaggcag ccggttatta ttttgagatg tttaaacaga ctaaaaatat caaacaactg
     1501 attattgcgt tggttatttt tatttcgccg aagttggcga ttaatttgaa aaggtttatg
     1561 taatgaaatt ttccgtttta atgtcgttat acattaaaga gcaaccgcaa tatttaagag
     1621 aatgttttga aagcttgaaa gtacaaactg tgcaggctga tgaaatcgtt gtttgttttg
     1681 atggtgcagt tacgcctgaa ttagaggcga ttgtagaaga atatagtgca attttgccga
     1741 ttaatgcggt gaaattccca caaaatcgag gtttaggtaa aacgctaaat gatgggctaa
     1801 cctattgtaa gaatgaatgg gttttcagaa tggatacaga cgatatttgt atgccggaac
     1861 gtttcgagaa acaagtggca tttattgaac agaatcctga aaccgtgatt tttggcggcc
     1921 aaattgctga atttgggcaa gatattcacg atcttgtcgc ttaccgcaat gtaccaacca
     1981 cggtggagga aatcgtcaga ttcactcgct tgcgttgccc gtttaaccat atgacggttg
     2041 cttatcagaa atccaaagtg ttggaagtcg gtggctatca agatctgcaa gaagattact
     2101 atttatggat caaactcatt gctcaattta aacaagtggc aaacttgccg gatttattag
     2161 tgtatgcccg agtcggtaac ggaatggttg gcagacgccg tggaatggcc caagcagagg
     2221 cagaatggcg tttatataaa ttaaaaaacc gctgccagat tcacgatccg atttcaggtt
     2281 ttgggatttt cataatgcgt gcaattcctc gtttattacc ggtttcagca ctgaaaaaag
     2341 tgtacggttt gctcagaaaa taaagctaaa aaaaccacag attgctctgt ggttttttgt
     2401 tattgattct tcaaaatctc attcattaat tgaatatcaa tatggcagta gccgttcggg
     2461 ttttttacta aatattcttg gtggtactct tcggcaggga aatattgctc taacatttgg
     2521 ttttccactg ccagcggctg atcaaattgg gtttgtaatt gtgcaagtgc ggcggttacc
     2581 accggttcgt cttgtgggtc ggtataataa ataccggtgc ggtattgaat accgatgtcg
     2641 ccaccttgtt tgttaatgct caccgggtct attactttaa agaagtaatc tagtaatttt
     2701 gccaagctaa tttgattggc atcataagtc acttttacca cttcagcgtg tccgctaccg
     2761 gcacacacct cttgatagct tgggttatcg gtattaccgt tggcatagcc tgattgtgcc
     2821 ttaatgacac ctttaatccg ttgcataaaa gattccacgc cccagaaaca gccaccggct
     2881 aagtaaattt cacgaatatt ttgcatatta cctctctata attgtaaatt tttcgataaa
     2941 tttgactgct tgtgatgaat aataaaatac cataatttag tttttgtcaa attttgtctt
     3001 gaatgatgat aatttcacaa gattttttgc ctaaaaatag gtatagtatc gtcacctttt
     3061 ttaatcaatt tataattaga ggttctatgg gtactcttaa cagcttttta ggcattattg
     3121 ttttactatt cattgcattt ttattttcga gcaataaacg tgcaataaac gtgcgtaccg
     3181 tattaggcgc attagcattg caggtagcta ttggtgcatt ggtgctttat gtgccggcag
     3241 ggcgtgatgc cttgaatgcg atggcaacag gtgtgtcaaa agtgatttct tacggtaatg
     3301 aagggatttc atttttattc ggtggcttag tcagcgacaa aatgtttgaa gtatttggcg
     3361 gcggcggctt tgtgttcgct ttccgtgtac ttccggtgat tattttcttc tctgcactca
     3421 tttctttgct ttactacatt ggagtgatgc aatgggtaat ccgtatttta ggtggtttat
     3481 tacaaaaagc attaggtaca tctaaagcgg aatctatgtc tgcggcagct aatattttcg
     3541 ttggccaaac tgaagctcca ttggtagtaa aaccttatat cagcaaaatg acagaatctg
     3601 aactctttgc gattatggca gggggcttag cttctattgc aggttctgtt atggctggtt
     3661 acgcaggaat gggcgtacca ttaacgtact taatcgcagc ctcctttatg gcggctccgg
     3721 cagggttatt attcgccaaa attatggtgc cacaaaccga aaaattccgt gatgaactag
     3781 aagcggtaga tttagaaaaa ccggcaaata ttcttgatgc agcagcttca ggtgcttctt
     3841 caggtatgca actggcatta aacgtagggg caatgttaat tgcattcgtg gcgttaattg
     3901 cattagtgaa tggtatttta ggaggtattg gcggctggtt cggttatgat accttaaact
     3961 taggtcaaat tttcggctgg gtatttaaac cgcttgcgtg ggtaatcggt gtgccttggg
     4021 aagaagcaga aattgcgggg cagatgatcg gcttaaaatt agcggtaaat gaattcgtgg
     4081 gttatttaga gtttgctaaa tacttagctc ctgagtcaac cgtacattta acggataaaa
     4141 ctgttgcgat tattaccttt gcactttgtg gctttgcgaa cttcagctcg attgcgattt
     4201 taatcggtgg tatcggggca atggctccaa gccgtcgtgg tgatattgcc cgacttggga
     4261 ttaaagccgt cattgctggc tcacttgcca acttaatgag tgcaaccatt gccggcttgt
     4321 ttatcggctt gggtggagca gttctctaat ccagtttgta taaaaccact agaaatagtg
     4381 gttttatctt tttttatctg acgtaaacgg ttgcttttgg tttgtctatt tacaagcggt
     4441 cagattttta taaaatttta ccaaccacca cgcatttaat aaaaggagac actatgaatt
     4501 taaaaaaatc cgctgagatt gctctttcgt tgatggatct caccacatta aatgacaatg
     4561 atactgatga gaaagtcatc gcattatgcc aacaagcgaa caccaagttt ggcacaccgg
     4621 cagcaatttg catttatcca cgttttatcc cgattgcccg caaagcattg aaacagcaag
     4681 gtatcgagca agtaaaaatt gcgacagtca cgaatttccc tcacggtaat gatgatattg
     4741 aaattgcggt agctgagacc aaagccgcag ttgcttatgg ggcagatgag gtagatgtgg
     4801 tattccctta taaagcatta attgcaggta atgagcaaat aggtttcgac ttggtaaaac
     4861 aatgcaaagc agtttgtgct gccaataatg tgttgcttaa agtgattatt gaaaccggcg
     4921 agttaaaatc agcagagctt attcgcaaag caagcgaaat ttcgattcaa gcaggggctg
     4981 attttattaa aacctcaacc ggcaaggtgg cagtgaatgc tacccttgaa tctgcccgca
     5041 ttatgcttga aaccattcgt gatttaggtg tggcagaccg tgttggcttt aaagctgcag
     5101 gtggggtaaa aacctcggaa gaagccgccc aatatcttgc acttgcggaa tctattttag
     5161 gcaatgactg ggtgagtgca tcacattttc gcttcggtgc atcaagttta ttagctaatt
     5221 tattagcaac attgaatgat gaacagcagc aagctgttca aggttattaa ttaataaaga
     5281 ggaacataaa atggctactc cacacattaa cgcacctgaa ggtgctttcg ctgacgttgt
     5341 aattatgccg ggcgatccgc ttcgtgctaa atatatcgct gaaacctttt tagaagatgc
     5401 aaaagaagtg accaatgttc gcaatatgtt aggctacacc ggcacttata aaggtcgccg
     5461 catttcagta atggggcacg gtatggggat tccatcttgc tcgatttacg ctaaagaatt
     5521 aattactgaa tatggcgtga agaaaattat ccgtgtcggc tcgtgcggtg cggtacgtaa
     5581 tgatgtcaaa gtgcgtgata ttgtcatcgg tgttggggct tgtaccgatt ctaaagtaaa
     5641 ccgtattcgc ttccgtgata acgattttgc ggcgattgct gattttgata tgacattagc
     5701 tgctcaccaa gcagctaaag cgaaaggcat tgaagctcgt ttcggtaatt tattctcagc
     5761 cgatttattc tactcacctg atgtcgaaat gtttgatgta atggaaaaat acggcatttt
     5821 aggcgtagaa atggaagcag caggcattta tgcggtagcg gcagagtatg gagcaaaagc
     5881 attagcaatt tgcaccgttt cagaccatat ccgcaccggt gagcaaacta cctctgaaga
     5941 acgtcaatta acctttaatg gtatgattga aattgcgtta gagtcagtat taattggcga
     6001 taagcagtaa tttctaacct gacaagcggt gaaattttgc aaaaaatttg cagaatttga
     6061 ccgcttgtta tttttgattc ttcctttatc ttcctttcgg gctttcgcca aactgccttt
     6121 tatattctcg actaaactgg cttgggcttt catagccgac ttgataggcg gtttcactca
     6181 cgcttactcc tgcttgtagt ttttcccttg ccgcatttag tcttaacgat ttctgatatt
     6241 gcagtggtgt cattgaagtt acgcttttaa aatgagcgta aaaccccgcc acgctcattc
     6301 ctacctcttc agccagtgct gacatattta gtgtatcggc aaattttctt tctaagattt
     6361 ttgttgcatt ggcaatttta gcaatattgc catcttgaga gagtagagag cgtatatagc
     6421 caccttgctc agattgtaat aaatagaaat agagttcgtt taatatcaat ggtgcaagaa
     6481 aatgaatatg atttggagaa ttaagcaaat ttagtaagcg taacaaacag tctttaattt
     6541 cattctccag ctcccattta gtgcgttgat taatgttttc acttattttc tgtgggggaa
     6601 gctgcgtgat aattttggca ataagatcaa aatccaagcg tagtgaaatc gcaagataag
     6661 gctgattttc tgcaactgat aaggtttggg taacaatcgg caaattcaca gggcaaaaca
     6721 tcatttcctg attaccgaag acttggcaat gtccattggt acagatttgc cgctcgccta
     6781 ataatactac acataaactt gggtcttgga tataaccgtt aaatctaata gaacgatcgg
     6841 cagcgtgaac ggttagccct gaaatgggag tagcccaaag ttcatttttc ggagcgaggg
     6901 caaaaataga ttcaataata gctcgatgag tttgcataat aatctcactt ttagaaaatt
     6961 aggcatattt tatagaaaat caggcaagac gacaaatagc aaaaagcgga taatatcccc
     7021 aatcaaataa agcatttaat aggagcaaaa tatgaaaatt ttttatcaca catcagcaac
     7081 tgcaaccggt ggtcgtgacg gcagaaccca agtggatgac ggttctatcg gttttgattt
     7141 agtcggtttc caaaatgaaa gtggcaaagt aggcactaat ccggaacaat tattcgcaat
     7201 gggctatgct gcctgctttg acagtgcaat gaatcacgtt gccccaacct taggcattaa
     7261 gccaaccaaa tccagtacca ctgttgcagt tgggattggt caaaaagctg atggtgcttt
     7321 cggcttagat ttagatatta ccattactgt ggaaggcatt agtgcggaag aagcgaaaac
     7381 tttaattagc aaggcacacg aagtttgccc atattcaaat gcaacccgtg gtaatgtaga
     7441 tgtgcgttta cacgttaaag tcgtgagtga atttgactta taaaaaataa ataggggaaa
     7501 tgaaaatgtt agattttgaa accacggtaa aaacacgaca atcaatccgc aagtttttac
     7561 cgcttccgat gacggaaact gaaatcaaac aaattcttgc cgatgcacaa aatgcccctt
     7621 cggcttgtaa tacacagccg tggttagtac acgttgcctc tggtgaaacg ctagcacgct
     7681 taaaagctcg ttttaaaaag acttttgaag cgggcattaa tgatgcggat tttgagttca
     7741 atcaaacgaa atttaccggt gactacgaac cacgttggcg taaccaatac agccacgttt
     7801 ttaccaccag ctatggcatt ccccgtgaag ataaagccgg tcgccaagtg gtgtatgatg
     7861 acaatattgt cggttatggt gcgccacata tggcattcct atttatgcca agcattgacg
     7921 gacacgatgt caatattgcc agcgatgttg gtatgtattc gcaaactttc ttgctctcac
     7981 tcaccgctcg tggttttggc ggcattccgc agcttgccct tgcgatgttt gctaaagatg
     8041 tgcgtgaaga gttaggcatt cctgaacatt acaagctcct ccacgccatt tctttcggac
     8101 acccagattg ggacgctatg cagaacaaac accatttagg gcgtgtgccg gtggaagaga
     8161 gtgcgacctt acattggtaa taaacaagcg gttgattttt cgcaaaaatt tgcgaaatca
     8221 accgtatttt ttaggagaat acgatgataa atttatttac cccttatact ctgaataacg
     8281 atgtagaaat taaaaaccgc cttgtagttg ccccaatgac ccattccgcc tccaacgatg
     8341 acggcacaat tagcgagcaa gaacgccatt tcttgcataa tcgtgcagca gatatgggct
     8401 tatttatcac cgcagcaacc ggggtaatgc gtaacggcaa agcgttttac ggtcagccgg
     8461 aagctcttga tgaacgctat ttggcaagcc tgacagaaac tgccaatatc ttgaaaaatc
     8521 aaggcaccaa agcgattttg caaattttcc acggtggggc acaagctatt cctgccttgc
     8581 ttgacggggc gaatgcagtt gcgccgtccg agcacgccaa cggtgctaaa gccctaacgg
     8641 cggacgaagt gaagcaaatg atccaagctt tcgctaatgc caccgattta gctattcaag
     8701 ccggttttga tggtgtggaa attcacgggg cgaacggcta tttaattcaa caatttttct
     8761 ctactgaatt taatcaacgc actgatgaat ggggcggtag ccttgaaaaa cgcttgcgtt
     8821 tcccgttagc ggtggttgag gcagcggtca gcgtgcgtga aaaacaccaa cgccctgatt
     8881 ttattatcgg ctaccgtttc tcaccggaag agccgggcga acacggctta accatgaccg
     8941 atacctacgc cctgattgat gctttgtgcg aaaagccgtt gcaatacttg cacatttcac
     9001 tctgggattt cggcaaaaaa gcccgccgtg gtgcagatac caacttcacc cgtatgcaac
     9061 tggtacacca acacatcaac gggcgtttac cgctgatcgg cgtgggtaac ttattaaccg
     9121 gtgaacagat ccgtaaagct tatgcaacag gctgggcaga atttatcgcc ttaggtaaag
     9181 cggtaatgct caacccgaac gtggcgacct tgttgaaaga taatcgagac agtgagattg
     9241 tcagcgaact cgacccgcaa caagccgacc actacggcat tcccgataga ctatggggct
     9301 actgcgtgca aggtggtgct tggttaccgc cgcttaaagg gcaaaacggg caaccaatgg
     9361 atatttaatc attacagaca agcggtcatt tttttgtaaa aatttgcaat taagtgaccg
     9421 cattttttca attatctgaa ggagaaaaat tatgattacg ttacattacc tgaacagttc
     9481 ctgctctcac cgcatcgttt ggttgttgga agccttaggc ttggattacg agctaaaaat
     9541 ctaccatcgt gaagagagcg gttttgcacc tatggaggta aaagccttgc acccacttgg
     9601 caaagcccct gtgttgcaag atggcgattt ggtgcttgcc gaaggcaatg cgattatcca
     9661 gcatctgatt gcccgttacg ccgaagggaa atttgagccg actcgtggta gcgaagccta
     9721 ttcaatgtat cactactggt tgtcgatttc tgcttcatta ttctcggcaa accttgtgac
     9781 aatgttggct aatcgctctg atctcggagc ttttggcgac tacgcaaaag cgcagactcc
     9841 gctgtatttt aaccatattg agcaaacact ttcagataaa aaatggattg tgggtgatga
     9901 actaaccggt gcggattttt ctctctgttt cccactacaa tgggggcgta attttgttga
     9961 aatggcaaat tacccgaata ttgcacgcta tttagaacag gtggaaaatc accctgctta
    10021 ccaaaaagcg aatcaaaaag ccctgaagct tgatatgaat agattttaat actcttttta
    10081 atccctaaca ttttgttagg gatttttgaa tataaaatca attaatgtga ataattattc
    10141 aaaaataaac ttgagtttag ccttaaatag ccttagacta ccgagcagaa aaagtcaaag
    10201 aaggattttc aatgagcaaa tacaagattt ttgttgatgg ggcagtagga acaaccgggc
    10261 tacgcattca cgaacgttta agccaagcgg acgatattga attattaacc ttgcccgaag
    10321 agcagcggaa agatttgaac gcccgtgtgg caaaagtcgc agaggcggat ttaactttcc
    10381 tctgtttgcc ggatgaagcc tcaaaagaat tagtagcaaa tgcaccggaa aatacccgaa
    10441 tttgcgatac ttcaaccgct catcgggtca atcctaattg ggtttatggt tttccggaat
    10501 tgagcggaca acgtgaaaaa atccaaaatg ccaagcgtgt tgcggtgccg ggttgccatg
    10561 ccacgggcta tattgcgttg gttcgtccac tggtggaaaa agggattctg cccgccgatt
    10621 accctttaag ttgtcattcc ttaaccggct attcaggcgg tggcaaagcg atgattgctg
    10681 actatgaaaa tgaaaacagc ccaaatgctt tcaatgcccc tcgtgtttac ggtttaactc
    10741 tccaacacaa acatttgcct gaaatgcagg cagttaccca aatgcaaaac ccaccgattt
    10801 tcacccctgt ggttgctgat tattacagcg gaatgttagt cactgtgcca ttgcagatct
    10861 tcgccttaca agcggtcaaa tccggcgaag aaattgcaaa tttgctcgcc gattactacc
    10921 aaaccagccg actaattcac gttcaccctt tccaatctct acccgaagac ggaatgcttg
    10981 ccgcgaatgc ttatgcaggt aaagacagct tagagatttt tatttacggc aacagcaccc
    11041 aacttttact tgctgcccgt tttgacaatt taggcaaagg ggcatcaggt gccgcagtgc
    11101 agtgtatgaa tattatgttg ggaagagatg aggttgaggg gttagagctt taaatataaa
    11161 tgtagggaca ggtcctgtgc ctgtccgata atcatcgccc atattcggac gggcacagga
    11221 cccgtcccta caagagaaag aaatatgcaa caacaagaaa tcaatcaatt tgcaaattta
    11281 ttagaaaaat ccaccgcttg tttggtgaaa tggcagggta aaatcattgt ggtgaaatat
    11341 ggcggtaacg caatgattaa tgaggaactg aaaaaatcag tgatggcaga tctgctgtta
    11401 cttcatcgtt taggcgtaaa agtggtactg gtacacggtg gcgggctgga gatttcacaa
    11461 ggcgtgaaat tattgggtaa agaaccgcaa tttatcaacg ggttgcgtgt taccgatagc
    11521 gatacgatta acgtggtttt gcaaatgttg gcaggcaaag ttaataaaag ccttgtcgcc
    11581 ttattaaaag ggaaaggcat tgggctgtgt ggtattgatg gggcgatgtt gcaatgcaaa
    11641 aaattagagg cagaggtgga ttacggcttt gtgggcgata ttgtgaaagt cgatccaact
    11701 gtgattgaaa ttgctcttaa tgcgggcttg attccggttg tttccacggt gggcgttgat
    11761 gaaaacgggc aggcttataa cattaatgca gacaccgctg ccagcgagat tgcgattgcg
    11821 ttacaagcgg aaaaattggt ctcgatgacc gatattgcag gtttattgcg agatcgcttt
    11881 gatgaaagca ccttaattcc ggaagtggaa gtaagcgaag tgcagtccct gattgagcaa
    11941 ggcattattg ccggtgggat gatccccaaa attgcgtgct gtaccgattt catcagagct
    12001 ggtggctctg aggcaaatat tattgacggg cgaatcgacc acgccatttt ggtagaaatg
    12061 ttcggtggca aaaacggcac acggttttat aaaaaataac aggaaagtga aatgacaagc
    12121 agtaatacga ttaagcaatt agataaggat tatatcgccc aaacctatgg cagatttgac
    12181 cttgcactgt cgcacggaaa aggctgtgaa gtgtgggatt ttgagggcaa taagtatctt
    12241 gattttacca gtggcattgg ggtaaatagt ttaggctggg cggatgagga ttggctacaa
    12301 gctgttacca cacaagccgg caaattagct cacacctcaa acctgttttt taccgaaccg
    12361 gcaagccaat tagcccaaaa attagtggct gcaagcggtc taaaacgggc atttttttgc
    12421 aattcagggg cagaggcaaa tgaaggagca attaaaaccg cccgcaaata tagtttcgac
    12481 aaatacggtt ccggtcgttc aacggtttta accctcgtga actcttttca cggacgaacc
    12541 atttcaaccc tcgcatccac tgggcaagag gtattccaca agcatttttt cccctttaca
    12601 gagggctttg aatatttacc tgtaaatggc attgaggcac tgaaagctcg cttggaaact
    12661 gagaacgttt gcgggatttt gctggaggtg gtgcagggcg agggcggtgt ttgcccatta
    12721 gaggcggatt atctgcacgc cgtgcaaagc ctgtgccaag aaaaagatat tttatttatg
    12781 attgatgagg tgcaaaccgg cattgggcga acgggcacac tttttgctta tcaacaattt
    12841 gatttaactc ctggtttagt cacgctcgct aaaggcttgg gcggcggctt gccgattggt
    12901 gctttcctgt taggcgaaaa agtggaaatg acattaggca aaagcgacca cggctcaacc
    12961 tttggtggca atcctgtttc ctgtgctgct gcaaatgtag taatcgataa aataaacgcc
    13021 gaatttctcg cccaagtgca acaaaaaggg cagttgttac agcaacgctt agcgagctta
    13081 ccaaaagtta aatccgtttc aggcttaggt ttaatgctcg gcgtagaatt tgaggaaggc
    13141 attttagccg ctgatattgt tgcaaaatgt atcaacaaag gtgtgctgtt tttaaccgct
    13201 aaaagcaagt taaggctact cccaccgctg atgatctctg aacaacagat agaacaagga
    13261 atcagagtgt tagaggatgt cttgaaagat tcttgagtta ttataaacag taggaat
//
LOCUS       DANLVT010000066        12928 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.066, whole genome shotgun sequence.
ACCESSION   DANLVT010000066 DANLVT010000000
VERSION     DANLVT010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12928)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12928)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12928
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.066"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..743
                     /locus_tag="PXC99_001593"
     CDS             <1..743
                     /locus_tag="PXC99_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418038.1"
                     /translation="DFPDVSNLLEVTINDEQWLVLERHDDFRELAKFGQKETYDRQMW
                     LQIRSYLVKESQFSKAKNWLAQQDFMERWMPEGNEHYGMNIHQFFAENTLNEWQEIYR
                     HRENKSPSFKVIPSVDSHTWESTYGNDGISFYAPIPMLYHGMKMKNAIKDGYWVDLQN
                     NLVCFNPEINEKFQNSLLVKKDKFLDFLKEHKLKLVWTVLGEKHAYKESKFLQELSGV
                     YYLYGKNQQVQGSIKHFIQEIEHWGEKQ"
     gene            740..1450
                     /locus_tag="PXC99_001594"
     CDS             740..1450
                     /locus_tag="PXC99_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5418039.1"
                     /translation="MNLNTLRLFVAVIQHGSLSKASERLNVPIATISRQIADLEKELN
                     IQLFDRQKSGVKPTMAGQRLYEQVHLSIEQLATAKEVLFEEQGNLKGKLRLSASPACE
                     PVLAWIADFQAAYPQVQVHCTLTDRLLDLSADGIDVAFRIGQLHGEQFIAKKVGQIGS
                     KWVAHPKFLARFGTPSTVKDLKNFPIAAWAKNEASVITLGTGRQAVEIPYLFSSNDSY
                     AIEYMAKSSGSACRQHGG"
     gene            1392..1601
                     /locus_tag="PXC99_001595"
     CDS             1392..1601
                     /locus_tag="PXC99_001595"
                     /inference="COORDINATES: protein motif:HMM:NF015431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5418040.1"
                     /translation="MPLNIWQKAVALLADSTVDRLVAENGLVEVLGETENPKFDLTMI
                     YAAHRYPSSIVRAFVGFVLEQVKAN"
     gene            complement(1675..2124)
                     /gene="nrdR"
                     /locus_tag="PXC99_001596"
     CDS             complement(1675..2124)
                     /gene="nrdR"
                     /locus_tag="PXC99_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HDL5418041.1"
                     /translation="MRCPFCSTEETKVIDSRLAASGYQIRRRRECISCKERFTTFESA
                     ELVVPYVIKNNGSREPFDAEKLRTGLRRALNKRPVSADDVEKAISQIIIQLQAMGERE
                     VPSRHIGTLAMNALKQLDKVAYIRFASIYLSFSDIEEFIKEIEKLKE"
     gene            complement(2124..2429)
                     /locus_tag="PXC99_001597"
     CDS             complement(2124..2429)
                     /locus_tag="PXC99_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgL domain-containing protein"
                     /protein_id="HDL5418042.1"
                     /translation="MNTKPTQPITLCAIYRSKAKEGMYLYVPKRDQFEQVPETLRQLF
                     GKPEFVMMFNLTGEKPLVRAKNEEVLQLLIEQGYYLQMPPPPENLHKAFIAQQKGEK"
     gene            complement(2419..3882)
                     /locus_tag="PXC99_001598"
     CDS             complement(2419..3882)
                     /locus_tag="PXC99_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDL5418043.1"
                     /translation="MAEYSGTTQEKMKDKQVEQINISPHSIEAEQAVLGGIMLSNDHW
                     DNVAERVQPHDFYNYAHRIIFEQMAELVRHNKPIDIITLDQALKDKGVLQDVGGFAYL
                     AELSKNTPSAANILAYADIVRDRSDLRSVISAGNQIAEMGYKTKGRNSKEVLDEAERI
                     VFEIAEKRNNANEGPQRIDDILLKTLARMDTLSKNRHNGGVTGVSTGFVDLNKKTAGL
                     QPSDLIIVAARPSMGKTTFAMNLCENASLVDIEDKDDLDEQGNPKKKPAKPVLIFSLE
                     MPADQIMMRMLASLSRVDQTKIRTGQISDDEDTAKISSTMAILQERNNIYIDDSSGLT
                     PTELRSRARRIYRENGGLSLIMVDYLQLMRAPGFADNRTLEIAEISRSLKALAKELEV
                     PVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYNDNSDLKGIAE
                     IIIGKQRNGPIGRVRLTFQGQYSRFDNYTGGHYDDEY"
     gene            4056..4955
                     /locus_tag="PXC99_001599"
     CDS             4056..4955
                     /locus_tag="PXC99_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005700892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5418044.1"
                     /translation="MIKKALFALTATAVFAASAFAKDVTIPTARGEVTFKETPSKIAV
                     FDTGSLDTLQALGVKIDGMPEFKVLSYLKPSADKAVNVGTVFEPDLEALNSLNPDLII
                     VGTRTAKKFDEVSQIAKTIDMTDNGDKLIESGLQRLDSFGKLFNKEAETEKLKAEINT
                     LLDQTKAAVKGKGNGLIILVNGGKISAFGSGYRLSWIHDNLGIPMADSSIKNTGHGQP
                     VSFEFIQKLNPDWLFVLDRIAAIGQEGQSAQQVLDNELVRQTKAWKNGNIVYLSAASY
                     LAPGGYEQMKTDLTNIKTAFEKK"
     gene            5049..6017
                     /locus_tag="PXC99_001600"
     CDS             5049..6017
                     /locus_tag="PXC99_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDL5418045.1"
                     /translation="MFSFFRLNLFLLILLIPISASVGVADFHWSEIFHSSEQSQIFFI
                     SRLPRTLAVILVGATLAVAGMVLQIVLKNRFIEPSMIGTSQSAAIGILLASLLFPTSA
                     LLLKMSIATLSALMGMGLFMLLIRQLPPHQQLMLPLIGIVFGNVIEAISTFIAYETDS
                     LQVLSIWFSGDFSGILAGRYELLWITAILAVVVYVMADQLTIAGLGENISTNLGINYK
                     QMTWLALIVVAMITAIVVVTVGQIPFIGLVVPNIVSRIAGDRLRKNLPAVVVLGANLV
                     LICDILGRAINAPYEVPISTIFGIIGTVIFLYLLLKEKRAEEKARG"
     gene            6070..6946
                     /locus_tag="PXC99_001601"
                     /pseudo
     CDS             6070..6946
                     /locus_tag="PXC99_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607611.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
     gene            6966..7724
                     /locus_tag="PXC99_001602"
     CDS             6966..7724
                     /locus_tag="PXC99_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005567524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL5418046.1"
                     /translation="MITVKNLHHKIGNATILNNINLTIPNGGITALIGANGAGKSTLL
                     SLIARLQPIQQGEIHLNELNIANTASQTIARQLAILTQDNVIHSRITVKDLLLFGRYP
                     HHQGRITSHDNAIVEEALVRFDLSTFSHRFLNELSGGQRQRALIAMTFCQQTDHILLD
                     EPLNNLDMFHARELMKLLRKLTDELALTTIMVVHDINIAAAYADTIIAMKDGGIKMIG
                     TPKEIITTENLKTVFNLDAEVLECQGKPLVIHHI"
     gene            complement(7901..10468)
                     /gene="glnD"
                     /locus_tag="PXC99_001603"
     CDS             complement(7901..10468)
                     /gene="glnD"
                     /locus_tag="PXC99_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     uridylyltransferase/uridylyl-removing protein GlnD"
                     /protein_id="HDL5418047.1"
                     /translation="MMKNSNELKTLLSAFTEQQRQAFQSENVLSLLAQRSQFYDQLLQ
                     ALWQDFGLAQYEHITLLAVGGYGREEMFPLSDLDILVLTEKPLEEAIQQRLNELFALL
                     WDSKLQLGTSVRTLEECIQIGKAEISVATNMLEGRFLLGNKSLWLRLKEALYQPDFWD
                     IKAFFRAKMAEKNERYARYHNTSYNLEPDLKHSPGGLRDLHLISWIMLRHYGVSSFVD
                     LLNKGLLYPEEYKELIAAQAVLFRMRFALHLQLKRYDNRLRFDRQLQLSEILGYQGEA
                     NQAVELMMRDYFQATKSISQLSQLLLNSFEQAYVNELQKNAQKQPLDQYFYRQEQQLF
                     VVERKIFKTQPTTMLDLFFHLTNDPTLIANADTLRQLRLCLQQQHEPMCFLPEMREKF
                     VQLFAQPKVISRAIVPMHQLGFLSAYLPQWKGIEGLMQFDLFHIYTVDEHTVRVMLNL
                     ENFSEDPSRAFFPLCHQLFATLSEKPLLYLAALFHDIGKGREGEHAQVGALDMREFAE
                     LHGFSQAQINDMVWLVAEHLTMSITAQRRDIHDPQIISEFAKKVQNQTALSSLLCLTV
                     ADICATSESLWNDWKASLFTQLYQFTLQQLAQNLNYQAVAQEHRLQALELMKFVLSAD
                     ERIALNAFWQPCPERYFLHHTPTQLVWHALHYVKTRRLPMVLISNEYARGGTEIFVCC
                     QDQPQLFARIAQLLSQKRISIHDAQIITTENGVVLDSFIVSERDGDDDLTDERCMQIQ
                     QAMMKMLSLTETGIKFTKKPVKHLSFKRKTRLRFLPPSSKQQTEFELFTLDREGLLAQ
                     IGYIFNRLRLNLINAKITTIGERVEDFFVVSNDQGKALSEQEQLELKAILITELDSE"
     gene            10580..11557
                     /locus_tag="PXC99_001604"
     CDS             10580..11557
                     /locus_tag="PXC99_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium/sodium antiporter"
                     /protein_id="HDL5418048.1"
                     /translation="MTLAVAAIIGGLIILVWSADRFVEGAASTARHFGMTPLLIGIVV
                     IGFGTSAPEMLVSASSALSGSPGIALGNAYGSNITNIALILGLTAIIKPLSVNSDVLK
                     KELPILLAVTLLSAYLVYDANVTQLDAIILLAVFFVYMAWTIITAMKSKNDALSLDVD
                     AELTNSAKMGLGKSILWLIIGLVSLVISSQFLVWGAVEVAKFFGVSDLVIGLTIVAVG
                     TSLPELASSIAAARKGEVDLALGNIIGSNLFNTLAVVGIAGAIEPMQVSAEVFSRDVL
                     MMSALTFLLFIFGINLYRRTEGGRINRLEGLLLFAAYVGYNFYLFKTAG"
     gene            complement(11614..12696)
                     /gene="serC"
                     /locus_tag="PXC99_001605"
     CDS             complement(11614..12696)
                     /gene="serC"
                     /locus_tag="PXC99_001605"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HDL5418049.1"
                     /translation="MTEIYNFSAGPAMMPKKVLEKAQQELLNWLDQGTSVMEVSHRGK
                     LFMELAAQSEADLRKLYNVPDNYRILFLQGGARGQFAAIPMNLIGKKGKALYLNSGHW
                     SATAAKEARNFAEIDEINILETEPQLKVSRLDFSDIAEQYDYIHYCTNETISGVEIFD
                     IPNVGNTPLVADMSSNILARGIDINKFGVIYAGAQKNLGPAGITIVIIRDDLIGNARK
                     DTPSIWNYATQRDADSMINTPPTFAWYLCSLVFQHLLAEGGLKATEERNLAKATLLYE
                     YLDSSTFYYNTVAHENRSLMNVTFTTGNDELNAKFVAEATACGLQALKGHKVLGGMRA
                     SIYNAMPIDGVKALIEFMKVFEQRNA"
BASE COUNT         3666 a         2589 c         2540 g         4133 t
ORIGIN      
        1 atgattttcc tgatgttagt aatcttttgg aagtaacgat taatgatgaa cagtggcttg
       61 ttctagaaag acacgatgat tttcgtgaat tagcaaaatt tgggcaaaaa gaaacttatg
      121 ataggcaaat gtggttacaa attagaagtt atttagttaa agaatctcaa ttttcaaaag
      181 caaaaaattg gttggcacaa caagatttta tggaaagatg gatgccagaa ggtaatgaac
      241 actatggaat gaatattcat caattttttg ccgaaaatac attaaatgag tggcaagaaa
      301 tttatcgaca tagggaaaat aaatcgcctt catttaaggt aatacctagt gtcgattctc
      361 acacttggga atctacttat ggcaatgacg gcatttcatt ttatgcgcca attcctatgc
      421 tttatcacgg aatgaaaatg aaaaatgcga ttaaagatgg ttattgggtt gatttacaaa
      481 ataatttggt ttgctttaat ccagagataa atgaaaaatt tcaaaatagc ttactggtta
      541 aaaaagacaa atttttggat tttttaaaag agcataagtt aaagttagtt tggactgtgt
      601 tgggtgaaaa acacgcttat aaagaaagta aatttttaca agaactttca ggcgtttatt
      661 atctatatgg taaaaatcaa caagtccaag gcagtattaa acattttatt caagaaattg
      721 aacattgggg agaaaaacaa tgaacctcaa caccctccgc ctctttgtcg ccgttatcca
      781 gcacggcagt ctctccaaag cctccgagcg actcaatgtg ccgattgcaa ccattagccg
      841 tcaaattgcc gatttggaaa aagagcttaa cattcaactc tttgaccgcc aaaaatcagg
      901 cgttaaaccc acaatggcag ggcaacgcct gtatgaacag gtgcatttgt ccattgaaca
      961 gcttgccact gccaaagaag tgttgtttga agagcaaggc aatttaaagg gtaaattacg
     1021 cctgtcggca agccctgcct gcgagcctgt tttggcgtgg atagctgatt ttcaggcagc
     1081 ttatccacaa gtacaagtgc attgcacgct gaccgaccgt cttttggatt tgtcggcaga
     1141 tggcattgat gtggcgtttc ggattgggca actacacggc gaacagttta tcgccaaaaa
     1201 agtggggcaa atcggcagta aatgggtggc acaccctaaa tttttggcac gctttggcac
     1261 gcccagcacc gtcaaagatt tgaaaaattt ccccattgcc gcttgggcaa aaaatgaagc
     1321 aagcgtcatc acgctaggca ctggcagaca agcggtagaa attccctatc ttttttccag
     1381 caatgacagc tatgccattg aatatatggc aaaaagcagt ggctctgctt gccgacagca
     1441 cggtggatag attggtggca gaaaatggct tggtggaagt cttgggtgag acagaaaacc
     1501 ccaaatttga tttgacgatg atttatgccg cccatcgtta tccgtctagc attgtgcggg
     1561 cgtttgtagg gtttgtgttg gaacaagtaa aagctaattg agtattttta aagaaaaatg
     1621 accgcttgtg gattttaaac tcacaagcgg tcattttttt atgttttttt gcaactactc
     1681 ttttaatttt tcaatttctt taatgaactc ttcaatatca ctaaagctta aataaataga
     1741 ggcaaagcgg atatatgcta ctttgtctaa ttgtttaagt gcgttcattg ccaatgtacc
     1801 gatatggcga ctcggcactt ctcgttcgcc catcgcttgc agctgaataa tgatttggct
     1861 aattgctttt tcgacatcat cagcactgac agggcgttta tttaatgcac gtcttaaccc
     1921 tgttcttaat ttttcggcat caaacggctc tcggctacca ttatttttga tcacataagg
     1981 cacaactaat tcggccgatt caaaggtagt aaaacgttct ttacagctta tacattcacg
     2041 gcggcggcga atttgataac cgcttgctgc aagccgtgaa tcgatcactt tagtttcttc
     2101 agtggaacaa aatgggcagc gcattatttt tcccctttct gttgtgcgat aaaggcttta
     2161 tgcaaattct ccggcggagg tggcatttgc aaatagtagc cttgctctat aagtaattgt
     2221 aacacttctt cgtttttagc acgcaccaat ggcttttcac cggttaaatt aaacatcatc
     2281 acaaattcag gcttaccaaa taactggcgt aatgtttccg gcacttgctc aaattggtca
     2341 cgcttaggca catataaata cattccttct tttgccttac tgcgataaat cgcacaaagt
     2401 gtgattggct gggttggttt agtattcatc atcataatgc cctcctgtgt aattatcaaa
     2461 acgggaatac tgcccttgga acgttaaacg cacccgacca atcgggccgt tacgttgttt
     2521 tccgataata atttccgcaa tgcctttcag atcggaattg tcgttataga cctcatcacg
     2581 ataaataaac ataattaagt ctgcatcttg ctcaatagaa cctgactcac gcaaatccga
     2641 gtttaccgga cgtttatcgg cacgttgttc caaactccgg tttagctgag aaagagcgac
     2701 tactggcact tctaattctt tcgctagtgc ctttaaagaa cgggaaattt ctgcgatttc
     2761 taaagtacga ttatctgcaa atcccggcgc tcgcattaat tggagatagt ccaccataat
     2821 caagcttaat ccgccatttt cacgataaat ccgtctcgct cgagaacgta attcggtcgg
     2881 tgttaaaccg gagctatcat caatatagat attattacgt tcttgtaaaa ttgccattgt
     2941 gctggagatt ttagcagtgt cttcatcatc tgaaatctga ccggttcgga tcttggtttg
     3001 atcgacccga gaaagtgagg caagcatacg catcataatt tggtctgccg gcatctccag
     3061 gctgaaaatt agcactggct ttgccggttt tttcttcgga ttaccctgtt cgtctaaatc
     3121 atctttatct tcaatatcca ctaatgaggc attttcacat aagttcattg caaaagtagt
     3181 tttccccatt gaaggacggg ctgccacaat gattaaatcc gaaggctgta accctgcggt
     3241 ttttttattg agatcaacaa acccggtaga aacaccagta actccgccgt tatggcgatt
     3301 tttagatagc gtatccattc gagcgagtgt tttaagcaaa atatcgtcaa tacgttgtgg
     3361 accttcattg gcgttattgc gtttttctgc aatttcaaac acaattcgct ctgcctcgtc
     3421 taacacttct ttggagttac gccctttcgt tttgtagccc atttccgcaa tttgattgcc
     3481 ggcactgatt acacttctta aatcggaacg atctcgcaca atatccgcat aggctaaaat
     3541 atttgctgca ctcggggtat ttttagaaag ctcggctaaa taggcaaaac ctcctacatc
     3601 ttgcagcacc cctttgtctt ttaaggcttg atccagcgta ataatatcaa tcggtttatt
     3661 gtggcgcacc aactccgcca tttgttcaaa aataattcga tgcgcatagt tgtaaaaatc
     3721 gtgcggttgt acacgctcag caacattatc ccagtgatca ttactgagca taatgccacc
     3781 aagcaccgct tgctctgcct caatcgaatg tggtgagata ttaatttgct caacctgctt
     3841 atctttcatc ttctcttggg ttgttccgct atattctgcc atatttttct cttgctataa
     3901 tgacgtattg atgtacatag tgtatcggaa ttttaattaa attgaaattt gcaaatttta
     3961 ggcaaaattc gcccgcttgt tattttccgc tttacttaaa atcaattttc gttaaaatct
     4021 ttgagaatta ttttcaatat aaatggagtt atccaatgat taaaaaagcc ttgtttgcat
     4081 tgaccgcaac tgctgtgttt gctgcttctg catttgccaa agatgttact attccaactg
     4141 cacgtggaga ggttactttc aaagaaaccc cgtctaaaat tgccgtgttt gacaccggaa
     4201 gtttggatac tttacaagcc ttaggtgtaa aaattgacgg tatgcctgaa tttaaggtgc
     4261 tttcttatct taaaccgagt gcagacaaag cggtgaatgt cggtacggta tttgagccgg
     4321 atttagaagc gttaaattct ttaaatccgg atttgatcat tgttggcaca cgcacagcaa
     4381 aaaaatttga tgaagtcagc caaattgcga aaaccatcga catgacggat aatggcgata
     4441 aattaatcga aagcggatta cagcgtcttg attctttcgg caaattattt aataaagaag
     4501 cggaaaccga aaaactaaaa gcagaaatta atactttatt agaccaaacc aaagcagcag
     4561 taaaaggtaa aggtaacgga ctgattattt tagtcaatgg tggcaaaatt tctgcatttg
     4621 gttcaggtta tcgtttaagt tggattcacg ataatttagg gattccaatg gcagattcta
     4681 gcattaaaaa taccggtcac ggtcagcctg tttcgtttga atttatccaa aaactcaatc
     4741 cggattggtt gtttgtgtta gaccgtattg cggctatcgg acaagaaggt caatcagccc
     4801 aacaagtgtt ggataatgaa ttagttcgtc aaactaaagc ttggaaaaac ggtaatatcg
     4861 tttatctaag tgctgcctca tatttagcgc cgggtggtta tgagcagatg aaaaccgacc
     4921 taactaacat taaaacagca tttgagaaaa aataattaac cttacaagcg gtcagatttc
     4981 ctcctatttt tgcaagtgcc tgcatttgta aaaaagagag agaatatgac cgcttgctat
     5041 ttatcactat gttctctttt tttagattaa atctatttct tttaatattg ctcattccaa
     5101 tcagtgccag tgtgggtgtg gcagattttc attggagtga aatttttcat tcttccgaac
     5161 aaagtcagat cttttttatc agccgtttac caagaacgct cgcagtgata ttagtcggtg
     5221 caaccttagc cgttgcaggt atggtattac aaattgtgct gaagaaccgc tttattgagc
     5281 ctagtatgat tggcactagc caaagtgcgg caattggtat tttacttgct agtttacttt
     5341 tcccaacatc agcattactg ttaaaaatgt ctattgccac attaagtgca ttaatgggaa
     5401 tggggctttt tatgttgctc attcgtcaat taccgcctca tcaacaatta atgctcccat
     5461 taatcgggat cgtttttggc aatgttattg aagctatcag cacttttatt gcttatgaaa
     5521 ctgacagcct acaagtgctt tcgatttggt tttccggcga cttctccggt attttggcag
     5581 gtcggtatga actgctctgg attaccgcta ttctggctgt tgtggtttat gtgatggcag
     5641 atcaattaac cattgcaggc cttggtgaaa atattagtac caacttaggc attaactaca
     5701 aacaaatgac ttggcttgcc ttaattgtgg tggcgatgat taccgctatt gtcgtggtga
     5761 cggttggaca gattccgttt atcggcttgg tcgtccctaa tattgtctct cgcatagcag
     5821 gtgaccgatt gcgtaaaaat ctgcctgcgg tcgtggtgtt aggtgcgaat ttagtcctga
     5881 tttgtgacat tttagggcga gccatcaatg ccccttatga agtgccgatt tctactattt
     5941 ttgggattat tgggacagtg attttcctct atttattgct caaagagaaa cgggctgagg
     6001 agaaggctcg tggttagatc acgctttatc gttttaagct taatcttatt agcaagtatt
     6061 ctgttttata tgacctataa tgcgaaaggt aattgggact ttatattgca actgcgtggc
     6121 aaaaagctta ttttgctctg tactattgct tatacgattg gtatttcgac cctgctattc
     6181 caaacactca cacataatcc tattttaact ccaagtattt tggggttcga ttcgctctac
     6241 ttgctattgc aaacctcgtt agtattttta tttggcggtt taggctttac tcagttagac
     6301 ccaagctata agtttttctt tgaaaccttg ttaatgctag gggcatcaat attactattt
     6361 agttcactga atcgaaatcg atccgattta acccgaatgc ttttaatcgg tgtcatcttt
     6421 ggtgtcttat ttagaagcct aaataatttg ttgcaacgaa tgtcgaccca acagagtttg
     6481 ccgttgctca aggctcttct ttgcctcatt taacctgact acccccacat tactttggat
     6541 tggaggctgt atcgctattc tctctgccat ttgggtctgg ttacaacggc ataaattaga
     6601 tattttgtta cttggcaaag ataaggcaat tgggcttggg ttagaatatc atcaattttc
     6661 acgtcaatta ctaatctgtt gtggattgtt ggtgtctgtt tcaaccgcac ttgttggccc
     6721 gattctattt ctagggctac ttgtttgtgc cattgttaat gcaattagcc cgactgtttg
     6781 ccatagcgtg cgaataccaa tgactttttt aatctctgcc atcaccttaa ttttagggca
     6841 ggcaatcttc gagcaagtgc tgaaaatgca aggggttctg agtgtcgtta ttgaatttat
     6901 tggcggtatt gtctttattt atctcatttt aaaacggaaa aaataaccat aaattaagga
     6961 agaaaatgat aacggttaaa aatcttcacc acaaaatcgg gaatgccacg attctgaata
     7021 atatcaattt aaccattcca aatggtggta ttaccgcttt aatcggagca aatggtgcgg
     7081 gcaaatccac cctgctctct ttaattgcac gcttgcaacc tatccaacag ggtgaaatcc
     7141 acttaaatga gctgaatata gccaacacag cttctcaaac tatcgctcga caactggcta
     7201 tcttgaccca agataatgtg attcatagcc gtattaccgt caaagatctg ctgttatttg
     7261 ggcgttaccc tcatcatcaa ggcagaatca cttcgcacga taatgccatt gtagaagagg
     7321 ctctggtacg atttgattta tcgactttct cccaccgatt cttaaatgaa ttatccggag
     7381 ggcaacgcca gcgggcatta attgcaatga ccttctgtca gcaaaccgat catatcttat
     7441 tagatgaacc actgaataat ttagatatgt tccatgctcg ggaattaatg aaattattac
     7501 gaaaattaac cgatgaactc gccttaacta ctataatggt ggtacacgac atcaacattg
     7561 ctgctgctta cgcagatact attattgcaa tgaaagatgg tggaattaag atgatcggca
     7621 ccccaaaaga gattatcacc actgaaaatt taaaaacagt gtttaatctt gatgccgaag
     7681 tgttagaatg ccaaggcaaa cctttagtta ttcatcatat ttaacgtttg aagatcatgg
     7741 taattaataa aaattgcgtc ttaatttatt aatctaaacg atagaaactt atatttagtt
     7801 tctaatttct tgaattctca acctctctta actcgtgatt taatttacct aaaacgttga
     7861 aaaatttacc gcttgcagtc ttcactccaa gcggttgttt tcattcacta tctagttcgg
     7921 taattagaat ggcttttagt tctaactgtt cttgttccga taaagctttt ccttgatcat
     7981 tactgaccac aaagaaatcc tctacccttt caccaatagt cgtaattttc gcattaatta
     8041 aatttaatcg gagccggtta aaaatatagc ctatttgtgc caacaaccct tctctatcca
     8101 aggtaaaaag ttcaaattcg gtttgttgct ttgatgacgg aggaagaaaa cgcagccgag
     8161 ttttacgctt aaatgacaaa tgtttcaccg gttttttggt aaattttatg cctgtttcag
     8221 ttaagcttaa cattttcatc atcgcctgct gaatttgcat acatctctca tcggttaaat
     8281 catcatcacc atcacgctca cttacaataa agctgtctaa cactacacca ttttcagtag
     8341 taataatttg tgcatcgtga atgctaatgc gtttttggct gagtaattgg gcgattcgag
     8401 caaacagttg aggttgatct tggcaacata caaaaatttc tgtaccacca cgggcatatt
     8461 cattactgat taaaaccatc ggcaaccggc gagtttttac ataatgcaga gcgtgccata
     8521 ccaactgagt cggtgtatgg tgaagaaaat aacgctccgg gcaaggttgc caaaatgcgt
     8581 ttaatgctat tcgctcatca gctgaaagca cgaacttcat cagttctaat gcttgcaagc
     8641 gatgctcttg tgccactgct tgataattca aattttgagc cagttgctgt agcgtaaatt
     8701 gatataattg ggtaaacagc gaggctttcc aatcattcca gaggctctca ctggttgcac
     8761 aaatatctgc aaccgttaaa caaagtagtg aagataaagc ggtctgattt tgcacttttt
     8821 ttgcaaattc gctgatgatt tgcggatcgt ggatatctcg tctttgtgcg gtgatcgaca
     8881 ttgtcaaatg ctctgccacc agccaaacca tatcattgat ttgtgcttga gaaaaaccgt
     8941 gtagttccgc aaattctcgc atatccagcg caccaacttg agcgtgttcg ccctctctac
     9001 ccttgccaat atcgtggaaa agagccgcaa gatagagcaa cggtttctca gaaagcgttg
     9061 caaatagctg atgacatagt gggaaaaacg cccgacttgg atcttcgcta aaattttcta
     9121 aatttaacat gactctgacc gtatgctcat cgactgtata aatatggaat aggtcgaatt
     9181 gcattagccc ttcgatcccc ttccattgcg gtagataagc acttaaaaaa cccagttggt
     9241 gcattggaac tattgctcgg cttatgactt tcggttgagc aaaaagctgt acgaatttct
     9301 ctcgcatttc aggcaaaaag cacataggct cgtgttgttg ctgtaaacac agtctcaact
     9361 gacgtaaggt gtcggcattc gctattaacg tagggtcatt agtaagatga aaaaagagat
     9421 ccaacattgt tgtgggttgg gttttaaata ttttgcgttc gaccacaaac aattgctgtt
     9481 cttgccgata aaaatactga tcaagcggtt gtttttgtgc atttttttgc aactcgttta
     9541 cataggcttg ttcaaaactg tttaacaata attggctcag ttgcgaaata gattttgtgg
     9601 cttgaaaata atctcgcatc attaattcca ccgcttgatt tgcttcgcct tggtagccta
     9661 atatttcact cagttgtaat tgtctgtcaa accgaaggcg attatcgtaa cgtttcagtt
     9721 gcaaatgaag tgcaaaacgc atccgaaaaa gtaccgcttg tgctgcgatc agctccttat
     9781 attcttccgg gtaaagtagc cctttattga ggagatcgac aaaagaagat acaccataat
     9841 gccgtagcat aatccaagag attaaatgca gatctcgcaa tcctcccggg ctatgtttga
     9901 gatctggctc aaggttatag ctagtattat gataacgtgc ataacgctca tttttttccg
     9961 ccattttcgc tctaaaaaac gctttaatat cccagaaatc cggctgataa agtgcttctt
    10021 ttaatcttag ccaaagcgat ttattaccca ataaaaatcg cccttccaac atattagtgg
    10081 caaccgaaat ttctgctttc ccaatctgaa tacattcttc gagcgtacgc acactggtgc
    10141 caagttgcag tttgctgtcc caaagcaagg caaatagttc gtttaaacgc tgctgaatag
    10201 cctcttctag cggtttttca gttaacacta agatatccag atccgaaagc ggaaacatct
    10261 cctcacgtcc gtacccccct accgctaata gggtaatatg ttcatattga gcgagtccaa
    10321 aatcttgcca aagtgcttgc agtagttggt cataaaattg gctacgttgt gcaagtaagc
    10381 tgagtacatt ttcggattga aatgcttgcc gctgttgctc cgtaaatgct gataaaagcg
    10441 tttttaattc gttgctgttt ttcatcataa tctcttccta aactggcaaa ataataggtc
    10501 atttattttc gtttgcctat atttattttg gctaaaatgc ttataatgcc tttatgtttt
    10561 tcatctaaaa ggatagttta tgacacttgc tgttgccgct attatcggtg gcttaattat
    10621 attagtttgg agtgcggatc gttttgtgga aggggcagcc tctacggctc gccattttgg
    10681 tatgacacca ttgttaatcg gtattgtggt cattggtttt ggtacatctg caccggagat
    10741 gctcgtatct gcatcttctg cattaagcgg atcgccgggt atcgctctcg gtaatgccta
    10801 cggttctaac attaccaata ttgcgctgat tttaggttta accgcaataa ttaaaccact
    10861 atcagttaat tccgatgtgt taaaaaaaga gttgccgatt ttactggctg tcaccctgct
    10921 ttctgcttat ttggtttatg atgcaaacgt cactcaactt gatgcgatta ttttacttgc
    10981 tgtgtttttt gtatatatgg cgtggacaat tattaccgca atgaaaagta aaaatgatgc
    11041 attaagctta gatgttgatg cagaattaac caatagtgct aagatgggat taggaaaatc
    11101 cattctttgg ctaattattg gtttagtatc gctagtaatt agttcccaat tcttagtctg
    11161 gggagcagtt gaagtggcta aattttttgg tgtgagtgat ttggtaatcg ggcttactat
    11221 tgtggcggta ggcacctcac tacctgaatt agcctcttct attgcagctg ctcgtaaagg
    11281 agaagtggat ttagctttag gtaacattat cggttctaac ttatttaata cgttagccgt
    11341 ggtggggatt gccggtgcta tagaaccaat gcaagtttca gcggaagtgt tttctcgcga
    11401 tgtcttgatg atgtcggctc tcaccttctt attattcatt ttcgggatca acctctatcg
    11461 tcggacagaa ggtggcagaa ttaatcggtt agagggctta ttactctttg ccgcttatgt
    11521 aggctataat ttctatttgt ttaaaactgc gggctagtgc caaattcaaa gagccacaaa
    11581 cgtggctctt taatttatat tcttaagctt gaattaagca ttacgttgtt caaatacctt
    11641 cataaattca atgagtgctt ttaccccatc aatcggcatt gcgttataaa ttgaggcacg
    11701 cattccacct aatactttat ggcctttcaa tgcctgtaaa ccacaagcgg tcgcttctgc
    11761 cacaaatttt gcatttagct cgtcattacc cgtggtaaag gttacattca ttaaggaacg
    11821 gttttcgtgt gctaccgtat tgtaatagaa tgttgaacta tccaaatact cataaagcaa
    11881 tgtagcttta gcaagattac gttcttcagt agctttcaaa ccaccctctg ccagtaaatg
    11941 ttggaacact aaagaacata aataccaagc aaaagttggc ggggtattaa tcatcgaatc
    12001 agcatctcgc tgagttgcat aattccaaat agatggggta tctttgcgtg cattgccaat
    12061 taaatcatca cgaataatca caatcgtaat gccagcaggc cctagatttt tttgcgctcc
    12121 ggcataaatt actccaaatt tgttgatatc aatccctcgg gctaagatat tagacgacat
    12181 atctgccact aacggggtat ttccgacatt cggaatatcg aaaatttcta ccccactgat
    12241 ggtttcattg gtgcaataat ggatataatc atattgctct gcaatatcgc tgaaatctaa
    12301 acgactcact ttaagttgcg gttcagtctc taaaatattg atttcatcaa tttccgcaaa
    12361 gttacgtgct tcttttgctg ctgttgccga ccaatgccct gaattaaggt aaagcgcttt
    12421 gcctttttta ccgattaaat tcattggaat ggctgcaaat tgcccccttg caccaccttg
    12481 aagaaataga atacgataat tgtccggcac attatacagc ttgcgtaaat ctgcttcaga
    12541 ttgtgccgcc agctccataa atagctttcc acggtggctg acttccatca ctgatgtgcc
    12601 ttggtctagc caatttaata attcttgttg cgctttttcg agtacttttt tcggcatcat
    12661 tgccgggccg gcactgaagt tatatatctc tgtcattttt cacctcgtat agtaataata
    12721 ttgattctat tctatctgaa aaaaagcgta atggtagaat aaaaacagaa aaattatttt
    12781 agcaaacttg cataaaatac tctttttaaa agcataatac tctttcgtaa catcacccaa
    12841 ataaggaata agcgatataa aaaaacaagc ataaatttct tccatttttt gcaaaaaaat
    12901 tattaaaaca aaccgcttgt cttaaaaa
//
LOCUS       DANLVT010000067        12354 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.067, whole genome shotgun sequence.
ACCESSION   DANLVT010000067 DANLVT010000000
VERSION     DANLVT010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12354
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.067"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..516)
                     /locus_tag="PXC99_001606"
     CDS             complement(<1..516)
                     /locus_tag="PXC99_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5418050.1"
                     /translation="MLDSLKEVNQKLDKKADKVGGGTKEDALVTLDTLIASGTVKAET
                     AMSLLPTLQKGAVATGASSEDMAKIAISSMQQFGIKEEDIGRALDMAVAAGQAGSFEL
                     AYMASWLPQQMAAAKQAGLSSIEGFERLLIANQQARVTAGTSDEAGNNLVNLLGKITA
                     KETNERFKNIEY"
     gene            615..866
                     /locus_tag="PXC99_001607"
     CDS             615..866
                     /locus_tag="PXC99_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5418051.1"
                     /translation="MAPTISDGDQMLVDFSKKEARGDDKIYLVQNGESVWVKRVRKVW
                     DYVELISDNESYRPIRITADEAQNLQIIGQVVHIGHSLV"
     gene            complement(1062..1262)
                     /locus_tag="PXC99_001608"
     CDS             complement(1062..1262)
                     /locus_tag="PXC99_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HDL5418052.1"
                     /translation="MQYVLDLTGYACPLPLLMAKKAMNDLKKGDSLEILLNQQSSLTD
                     FELLAKEQGWLCELQAVENVGY"
     gene            complement(1321..1833)
                     /locus_tag="PXC99_001609"
     CDS             complement(1321..1833)
                     /locus_tag="PXC99_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HDL5418053.1"
                     /translation="MQQLEPQTFASWAEPIDMLYACHSKVKSFCKQLQILPDYLEKNG
                     VNQAVKNDVQQILNYFNISAPLHHEDEEDDFFPELIKVQPQAQAEVDELERQHVHLHK
                     NWDYLSAQLEDLLAGKRENVDRDLIERFVAGYDVHIAIEEPLFELGREHLAQDKLSAM
                     GKVMADRRKL"
     gene            complement(1846..3000)
                     /gene="tgt"
                     /locus_tag="PXC99_001610"
     CDS             complement(1846..3000)
                     /gene="tgt"
                     /locus_tag="PXC99_001610"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HDL5418054.1"
                     /translation="MKYELKTTSGNARRGRLTFNRPKGEFHVETPAFMPVGTYGTVKG
                     MTPEEVKATGAQILLGNTFHLWLRPGQEVMKMHGDLHDFMQWHGPILTDSGGFQVFSL
                     GKLRKIKEEGVTFQNPISGEKIFLSPEKSMEIQYDLGSDIVMIFDECTPYPATFDYAK
                     KSMEMSLRWAKRSRDRFDELENPNALFGIIQGGIYEELRKVSVEKLVEIGFDGYAVGG
                     LAVGEPKEDMHRILEYVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNA
                     RNGHLFVTNGIVKIRNAKYRADTTPLDPECDCYTCKNYTKAYLYHLDKCGEILGARLN
                     TIHNLRYYQRLMAEIRQAIEEDRFDDFVVEFYARIGKEVPPLQSEVKEQK"
     gene            complement(3059..3199)
                     /locus_tag="PXC99_001611"
     CDS             complement(3059..3199)
                     /locus_tag="PXC99_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418055.1"
                     /translation="MKKLLLCVGILVLAACSSTGVGGSIGAGGGSNGVGIGLGVGTDF
                     RF"
     gene            3293..3865
                     /locus_tag="PXC99_001612"
     CDS             3293..3865
                     /locus_tag="PXC99_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1439 domain-containing protein"
                     /protein_id="HDL5418056.1"
                     /translation="MKILRKFAAVCVVSMAMLSANANLLTISEQEINDYLATKLAEKI
                     PLKDKVGIPKLFELDYRLHSLTSQIGRTEEKKVAISGVVDGLLNAKGKKYAASIHLNM
                     DTTPYYDPQKGALFLKDVRLLSWSATPAKYQAELQMFLPVLADGLSSFLNSTPVYTLD
                     ENKTKEAMVKKFGKAIVVENGNIKLETTIF"
     gene            3967..4185
                     /gene="cspD"
                     /locus_tag="PXC99_001613"
     CDS             3967..4185
                     /gene="cspD"
                     /locus_tag="PXC99_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein CspD"
                     /protein_id="HDL5418057.1"
                     /translation="MDIGIVKWFNNVKGFGFITSDVCEGDIFAHFSEIQAEGYRSLKV
                     GQKVQFELVQGERGASASNITPISEKTL"
     gene            4275..5189
                     /locus_tag="PXC99_001614"
     CDS             4275..5189
                     /locus_tag="PXC99_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5418058.1"
                     /translation="MPSSYQLVLINLLYIFGIGLNIVLLRFLSLHFDPLNNNGIRFLV
                     GGFTLLFFILWRFRTSLSQLIKTPKLIAISLFVGLMMSANMYFWLKGVKITNAVTVSI
                     FGVLAMPFGVIIAAIFFQDERERIKSKAFWFGSILTIIGSLGFIWHGKTLSIGEGFIL
                     GSVFLFLSIIIRNIQNLVVKFARELNVLTLSCVTSLTTSLSSLLLSQQAGKFNELFTA
                     PNWLLFSLMVAGIYAIMIGMVLTFHIIQTQGLITYQVLELLMPVSTAIIAYILLDERI
                     SIVQMGFACIVILGSSIALKLVKYPKHY"
     gene            5308..6168
                     /gene="araC"
                     /locus_tag="PXC99_001615"
     CDS             5308..6168
                     /gene="araC"
                     /locus_tag="PXC99_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose operon transcriptional regulator AraC"
                     /protein_id="HDL5418059.1"
                     /translation="MYKNLSLLSPTYPFDLEFIAGLTQCEKGNYLDSIVDRQQGMHGY
                     MLQLTTFGRGSVFDGKHVFTAHRGQLLLFTPNAVQHYHRHPESQYWHYKWVYFQPNPK
                     WNKWLNWSDMEEKIGRITISDDRYFQEISQLFSKIELELKSSKFFKEDIATSLLEYLL
                     MKCISAEKIEVIPVIDQRILTVCDLILTNLAKNESLEAMAEKVFLSPSRLSHLFKQSL
                     GISLVQWRELQRISESKKLLYFSNISISNIAKSLGYEDSLYFSKIFKKHTGLSPSEFR
                     TLERRKDSEM"
     gene            6355..7329
                     /locus_tag="PXC99_001616"
     CDS             6355..7329
                     /locus_tag="PXC99_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL5418060.1"
                     /translation="MKKPTFKHALFSSILALACYGSAFANDVVNISKIDGMPWFNRMA
                     EGVVQAGKDNNINAYQVGPSNTDAPQQVKLIEDLIAKKVSAISIVPNDANALEPVLKK
                     AKQNGIVVLTNESVGQPSADWDIEIIDNAQFAADYVEEVAKAMGGKGGYVIYVGGLTV
                     PQHNLWADLFVKYQKEHYPDMFEVTSRMPVAENINDARRTTIDLVKAHSDLKAVVSFG
                     SQGPIGAGLAVKEKRLKNKLNVFGMMIPSQAANLIKSGDITMGITYDPANAGYALAAV
                     AAKVLKGEKIEDGLEIPTVGKAKVDSEKKLLQFHNVLKVTKENIDKLY"
     gene            7384..8874
                     /locus_tag="PXC99_001617"
     CDS             7384..8874
                     /locus_tag="PXC99_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL5418061.1"
                     /translation="MAFISMRHISKTFHGIKALNQVNLSLDYGEALCLAGQNGCGKST
                     LIKILSGVYQPDKGAEIQIGATQYTKLTPQESIDKGIQVIYQDLALFPNLTVAENIAI
                     NLHRKFGWVSQDHIHQVALTAIQSINANLDLNAILEDLPIAQQQLVAICRALAQNARL
                     LIMDEPTASLTAKEVKDLLDVVIKLKSKGISIIFVSHKLQEVMSVSDSVLVLKDGNMV
                     GQYPIREMNEKRLGFLMTGLEIDYKRLDLPDFLQRKTVLEVRNLTLPHQYQEINFSLR
                     EGEIVALTGLLGSGRTELCLSLFGITQPQSGDILLNGEKVIFNTNRDAIAKGIAYVSE
                     DRMHTGLIMAESIHHNIISTIFHKITDKLQIIQSSKAYASSQALIDSLKIKVSDSDLP
                     VNTLSGGNAQRVSIAKWLAIDPKIIILDAPTIGVDIANKEGIFQIIKSLAQQGIAVIF
                     VTDEVEETYYNSHRVIVMKKGRIVDEILPAYSSEKSIAEVIYENQQ"
     gene            8858..9817
                     /locus_tag="PXC99_001618"
     CDS             8858..9817
                     /locus_tag="PXC99_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5418062.1"
                     /translation="MKISNNHILSSTLLILILLLTLFTRDFATIENLYDVVNNYAMLM
                     ILACGLFVVLLSGGIDISFPAITIISQYVMVTLIGKYDVGFAGVFVISSTIGILLGFI
                     NALFVNRLSVPSIIITISTLNIFYGGLLYFTKGVWLYEYPEWFTQEIVFFKQITAEGV
                     EFGLSFQALMAILAVILTGLITNKLTIGRKIYALGGNPDATSRIGFNLLFLHLFAYGY
                     MGFMAGLAGIVQSYTVQSVAPDSLLGYELTVLAAVVLGGASLSGGRGTLLGTVMGVML
                     LAIIQNGLNLMNVSSYWQTIITGIIIILSISATALSQRKKQGA"
     gene            9820..10770
                     /locus_tag="PXC99_001619"
     CDS             9820..10770
                     /locus_tag="PXC99_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5418063.1"
                     /translation="MKSKLDPTIFYLLALFAVAVIAFSIFIPDIFWSVSNFQSMASQI
                     PVLGILTLAMALPMLTGGINLSIIAGMNACSLIIAYFITQYTGISWLFIAILLSLCCA
                     LAIGLLNGTLIAIIRVSPILATLGTMTLINGINILVTNGSTIANFPETMLSINASAFL
                     WIPLPILIFLFLAGLIWFFLEKTAMGKAVYFIGNNEKATYYSGINTKKVLIWVYVISS
                     ILCVFAAILMMSKLNSAKASYGDSYLLISILAAVLGGINPDGGKGKLLGIMLALVLLQ
                     VIESGLNMLGISSYITMILWGSLLLFFIFLQKNRLFRLTQ"
     gene            10783..>12354
                     /locus_tag="PXC99_001620"
     CDS             10783..>12354
                     /locus_tag="PXC99_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
                     /protein_id="HDL5418064.1"
                     /translation="MQNEKQLIEQGNTVIGIELGSTRIKAVLISSDGTILATGGADWE
                     NRLIDGIWTYHQNEIWEKLQAAYMDLSKTVKEKYHTTIRTAKALGISAMMHGYLPFDK
                     HGNPLVAFRTWRNNITLTSSEKLTALFQYPIPQRWSIAHLHQALLNQEPHLPEIDYLT
                     TLSGYVHWQLTDHKVLGIGDASGMFPIDTELKSYNPTMLAQFDRAIADYRMPWKLEAI
                     LPQVRVAGEQAGKLTEKGAKLLDPTDNLQAGIPLCPPEGDAGTGMIATNCIKEKTGNI
                     SAGTSAFAMIVLEKALSKAYSELDIVTTPAGKLVAMAHANNCTSDINAWVNLFGECLS
                     VFGVNICTEELYEMLFLHALQGDADCGGLLSYGFHSGEHNVGLSEGCPVFLHPTNAHF
                     NLANFMRTHLYTAFGAMKLGMDILINQEKVEISRILGHGGIFKTEGVAQKILSSALNI
                     PLATASTASNGGAWGIALLADFLSVSDRYSLEEYLDNCIFNTTKLNLVQPDKTMSEGY
                     ERFMQRYKQGIPVVEK"
BASE COUNT         3629 a         2472 c         2390 g         3863 t
ORIGIN      
        1 atattcaata tttttaaaac gctcatttgt ttctttagct gtaatcttac caagcagatt
       61 taccagatta ttacctgcct catcgcttgt accggcagtg acacgagcct gttggtttgc
      121 aattaaaagt cgctcaaagc cctcaatact actcaaaccg gcttgttttg cagctgccat
      181 ttgttgaggc aaccaacttg ccatatatgc aagctcaaaa ctacctgctt gcccggctgc
      241 aacagccata tccaatgccc gcccaatatc ctcttctttg atgccaaatt gttgcataga
      301 ggagatcgca atttttgcca tatcctccga gcttgcccct gttgccaccg cccctttctg
      361 caaagtaggt aatagactca ttgcggtttc ggctttgact gtaccggagg caatgagcgt
      421 atcaagcgta actaacgcat cctcttttgt gccaccccca accttatccg cctttttatc
      481 aagtttttgg tttacttctt tgagcgagtc taaaatatcg tccagctttt ccttaagagc
      541 cttattcaga cagcctatta agcctaggcg taaaagccca taattgtggc gtattttggg
      601 ctaatggcac atcaatggcc ccgactatca gcgatggtga tcaaatgtta gtggatttca
      661 gcaaaaaaga agcccgtgga gacgataaga tttatcttgt gcaaaatggt gaaagcgttt
      721 gggtaaaacg tgtaagaaaa gtgtgggact acgttgaatt gattagcgat aatgagtcct
      781 accgcccaat ccgaattaca gcagacgaag ctcaaaactt acaaatcatc gggcaggtag
      841 tccacatcgg acactcttta gtttaaaaca gatttaaaat agttttaaaa ccgatcaaac
      901 ctatgcaaaa aatatcgcaa aaactgccca tttttttcta atcctgctca ttttgttttt
      961 tgcatagccc caaccaaaca ataacggcga acccttgtat tcacggggct cgccgttatt
     1021 tttccgccca aatttttttc tttctctcta tgcaaaaaag atcagtaccc cacattttca
     1081 accgcttgta gctcacaaag ccaaccttgc tctttggcaa gcagttcaaa atcggtaagg
     1141 ctactctgct gattgagtaa aatttccaag ctatcgccct ttttaagatc gttcatcgct
     1201 ttttttgcca ttaataacgg caaggggcag gcatagccgg ttaaatctaa aacatattgc
     1261 atagcgaaat agggaataaa gaaaaagggc gaatattgaa attcgcccaa tcacaaaaga
     1321 ttagagttta cggcggtctg ccatcacttt gcccatagcc gataatttgt cttgagctaa
     1381 atgctctcgc ccaagctcaa agagtggctc ttcaatcgca atatgcacat cataacctgc
     1441 cacaaaacgc tcaattaagt ctctatccac attttcacgt ttacctgcga gcagatcttc
     1501 aagctgtgcc gacaaatagt cccaattttt atgtaaatga acgtgctggc gttccagttc
     1561 gtctacctct gcttgagctt gtggttgcac cttaataagc tcagggaaga aatcatcttc
     1621 ttcatcttcg tgatgtaaag gggcagaaat gttgaagtag ttcaaaatct gctgcacgtc
     1681 attcttcact gcttggttta ccccgttttt ctcaaggtaa tccggcaaaa tttgcaactg
     1741 tttacagaaa ctttttactt tgctgtggca agcataaagc atatcaatcg gctctgccca
     1801 gcttgcaaag gtttgtggtt caagttgttg catatacact ccttgttatt tctgttcttt
     1861 tacttcagat tgtaaaggtg gcacttcttt gccaattcgg gcataaaatt ccactacaaa
     1921 atcatcaaaa cgatcttctt cgatggcctg gcgaatttct gccattaggc gttgatagta
     1981 gcgtaaatta tgaatggtgt ttagtcttgc ccctaaaatc tcgccacatt tgtctaagtg
     2041 atataaatag gctttggtgt agtttttgca agtgtaacaa tcacattcag gatcaagcgg
     2101 tgtggtgtct gcacgatatt tcgcattacg aatttttaca atgccgttgg tcacaaataa
     2161 atgtccgtta cgggcattgc gggttggcat tacgcagtca aacatatcaa taccacggcg
     2221 aaccccttcg actaaatctt ctggcttgcc tacacccatt aaatagcgtg gtttatctgc
     2281 cggaatttgc gggcaaacgt attctaaaat gcggtgcata tcttctttag gttcacctac
     2341 cgccaagcca ccgactgcat agccatcaaa gccgatttca actaattttt ccaccgagac
     2401 tttgcgaagt tcttcataaa taccaccttg aataatgcca aataacgcat tcgggttttc
     2461 aagttcatca aagcgatcac gagaacgttt cgcccaacgt agtgacattt ccatcgattt
     2521 ttttgcataa tcaaaggttg ccggataagg agtacattca tcaaaaatca ttacaatgtc
     2581 tgatccaaga tcgtattgga tctccattga tttttccggc gaaaggaaaa ttttctcacc
     2641 gctaatcggg ttttggaaag ttacgccttc ttctttaatt ttacgcagtt tacctaagct
     2701 aaaaacttgg aaaccgccgg agtcggttaa aatagggccg tgccattgca taaaatcgtg
     2761 caagtcaccg tgcatcttca tcacttcttg ccccggtctt aaccataaat ggaaagtgtt
     2821 gcctaataaa atttgcgccc ctgtcgcttt aacttcttca ggagtcattc cttttaccgt
     2881 gccataagtg ccaacaggca taaatgccgg tgtttcaacg tgaaattcgc ctttcgggcg
     2941 gttaaaagtt aaacgcccac gacgagcgtt accacttgtt gtttttaatt cgtacttcat
     3001 tttaatccac aaataaacag ttcgtgaaag cggtcaaaaa ccaccaaaaa tttaccaatt
     3061 agaatcgaaa gtcggtgccg acccctaagc cgattccaac gccgttagag ccaccaccgg
     3121 ctccaatact gccacccaca ccggttgatg agcaagcagc taacactaaa atgccaacgc
     3181 ataataagag ttttttcatt ttttgctgtc ctaaacgaaa aagagagtct atgatagacc
     3241 caatgtattc taacctgttt aatggattaa acctaatttt aaagggtaaa ttatgaaaat
     3301 tttacgtaaa ttcgctgctg tatgcgttgt ctcaatggct atgctctctg ctaacgctaa
     3361 tttgctcact attagcgagc aggaaatcaa cgactattta gccaccaaat tagctgaaaa
     3421 aattccttta aaagataaag tcggtattcc taaattattt gaattggatt atcgcctgca
     3481 ttcacttacc agccaaattg gcagaaccga ggaaaaaaaa gtagctattt ctggcgttgt
     3541 tgatggactt ttaaacgcaa aaggcaagaa atatgctgcc tctatccatt taaatatgga
     3601 taccacgcct tattatgatc cacaaaaagg ggcattattt cttaaagatg tcagattgtt
     3661 aagttggtct gcaacaccgg ctaaatatca agcagagctg caaatgtttt tgccggtgtt
     3721 ggctgatgga ttaagtagtt ttttaaacag tacgcctgtt tatactttag atgaaaataa
     3781 aacaaaagaa gcaatggtga aaaagttcgg caaagccatt gtagtagaaa atggtaatat
     3841 caagctagaa accactattt tttaaataat tttgtgatct tcgtctaatt tttacacttt
     3901 gatagttgag cttttacgcg ttttatttac aatccaaata tcgccattca ttatttggag
     3961 agttctatgg atatcggtat tgttaaatgg tttaacaatg taaaaggatt tggttttatt
     4021 acatcggatg tatgtgaagg agacattttt gctcattttt ctgaaattca agcagaaggt
     4081 tatcgctctt taaaagtcgg ccaaaaagta cagtttgaat tagttcaagg agagcgaggt
     4141 gcctcagcct caaatatcac gcctataagc gaaaaaacgt tataatccgt cgttaataaa
     4201 attattgtta taaccatact ttattagatt ttaaagctca gcttttacag ctgagccatt
     4261 tttgcttttt gaatatgcct tcctcttatc aattagtctt aattaaccta ctttatatct
     4321 tcggtattgg tctaaatatt gtactgctta ggtttctcag tttgcatttt gacccattaa
     4381 ataataacgg tatacgtttt cttgttggtg ggttcacctt attatttttc attttatgga
     4441 gattccgcac atcgctgtct cagctgatta aaactccaaa attgattgcg atttctctat
     4501 ttgtcgggtt aatgatgtcc gcaaatatgt atttttggct aaaaggggtc aaaattacaa
     4561 atgctgttac cgtctctatt tttggggtat tagctatgcc atttggtgtg attattgccg
     4621 ccatattctt tcaagatgaa agagaacgca ttaaaagcaa agctttctgg ttcggctcaa
     4681 ttttaacgat catcggttca ctcggattta tttggcacgg gaaaacactc tcgattggcg
     4741 aaggatttat tcttggttct gtgttcttat ttttgtcgat cattatccgt aatatacaaa
     4801 acctagttgt aaaatttgct cgagaactga acgtattaac cctaagttgt gtaacatctt
     4861 taactacttc actctcgagt ctattactta gccaacaagc aggtaaattt aatgagcttt
     4921 ttactgcacc aaactggcta ctattctctc tgatggttgc tggtatttat gcgattatga
     4981 tcggaatggt attaaccttt cacattatcc aaacccaagg actgataacc taccaagtat
     5041 tggaactatt aatgccggtt tcaacagcca tcattgctta tattttactg gacgaacgta
     5101 tttccattgt tcaaatgggc tttgcttgta ttgtgatttt aggctcaagt atcgccttaa
     5161 agttagtaaa atatcctaag cactattagg atctttgcta attaatattg gtaaaattac
     5221 atttggttta ctaatctgag cgttcattca ttagtaatga taaacaagcg gttatttttt
     5281 gttatttttt ggtaaatact gatagtcatg tataaaaacc tttctttgct ttcaccgact
     5341 tatccatttg accttgaatt catcgccggt cttactcaat gtgagaaagg taactatctt
     5401 gattctattg tcgataggca acaaggaatg cacggttata tgcttcaatt aaccactttt
     5461 ggtcgtggtt ctgtttttga tggtaagcac gtttttaccg ctcatcgagg gcagttactc
     5521 ctctttacac ccaatgccgt tcaacactac caccgtcacc cggaaagcca atattggcac
     5581 tacaaatggg tctattttca gccgaatcct aaatggaata aatggctgaa ttggtcagat
     5641 atggaagaaa aaataggacg tatcaccatt agcgatgatc gttactttca ggaaattagc
     5701 caacttttca gtaaaattga attagaactt aaatccagta aattttttaa agaagatatt
     5761 gcaacaagtt tgttggaata cttacttatg aaatgtattt ccgccgagaa aattgaggtt
     5821 attcctgtca ttgatcaacg cattttgaca gtttgtgatt taatcttaac gaatttggct
     5881 aaaaatgaga gcttagaagc aatggcagaa aaagtatttt tatcgccatc tcgcctctca
     5941 catcttttca agcaatcgct ggggatcagc ttagtgcaat ggcgggaatt acaacgcatt
     6001 tccgaatcca aaaaattgct ttatttctct aacatctcta tctctaatat tgcgaaatcc
     6061 ttaggctatg aggattctct ctacttttcc aaaattttca aaaagcatac cgggctgtca
     6121 ccctctgagt ttagaacctt agaacggcgt aaagacagtg aaatgtgatc ttgatctcac
     6181 tttactttgc atagcagaat tttccatatc gataacaaaa agttacctgt ttttctctca
     6241 ttcaaaagca taagatacaa acagctttaa tagtgctgtt tctattagag aagggatatc
     6301 aagctctgtg agtgatattc agtgaaataa cttcttatgt atgagggaag aacaatgaaa
     6361 aaaccaacgt tcaagcacgc attattttca agtattttag ctttagcctg ttacggctcg
     6421 gcatttgcca atgatgttgt taatatctcc aaaattgacg gtatgccgtg gtttaatcgt
     6481 atggcagagg gtgttgtgca agcaggcaaa gataacaata tcaatgctta tcaagttggt
     6541 ccatcaaata ccgatgcacc acaacaagta aagttaattg aagatttaat tgcgaaaaaa
     6601 gttagtgcta tttccatcgt ccctaacgat gcaaatgcct tagaaccggt actgaaaaaa
     6661 gcgaaacaga acggtattgt ggtattaacc aatgagtcag tcggacaacc tagtgccgat
     6721 tgggatattg aaattatcga taatgcacaa tttgcagcag actatgtaga agaagtagca
     6781 aaagctatgg gcggaaaagg cggctatgtg atttatgttg gtggtttaac cgtgcctcaa
     6841 cataatctgt gggctgattt attcgtgaaa taccagaaag agcattatcc ggatatgttt
     6901 gaagtgacca gcagaatgcc tgttgccgaa aatattaatg atgcacgccg taccaccatt
     6961 gatttagtga aagcccattc cgatcttaaa gcggtcgttt cttttggttc acaaggtcct
     7021 attggtgcag ggttggcagt gaaagaaaaa cgcttaaaaa ataaattaaa tgtcttcgga
     7081 atgatgattc cttcccaagc agccaattta attaaaagcg gtgatattac aatgggaatt
     7141 acctatgacc cggccaatgc aggttatgct ttagctgctg tcgctgccaa agtattaaaa
     7201 ggcgaaaaaa ttgaggatgg attagagatc ccaacggtcg gtaaagccaa agtagatagt
     7261 gagaaaaaac tacttcaatt ccacaatgtg ctgaaagtca ccaaggaaaa tatcgataaa
     7321 ttatattaat ttgcttgaaa tatgggctga tagccagccc atattttccc tcaggaggca
     7381 cttatggcat ttatttcgat gcggcatatc agtaaaacat tccacggcat aaaagcatta
     7441 aatcaagtca atctctcatt agattatggc gaagcacttt gtcttgccgg tcaaaatggc
     7501 tgtggaaaat caaccttgat caaaattctt tccggcgttt atcaaccgga taaaggggct
     7561 gaaattcaaa ttggtgcaac ccaatatacc aagctgacac cacaggaatc gattgataaa
     7621 ggtattcaag tgatttatca agatttagcc ctcttcccca atttaaccgt ggcagaaaat
     7681 attgccatta acctgcaccg aaaatttggc tgggtgagtc aagatcacat tcatcaggtt
     7741 gccctcactg ctattcaaag cattaatgca aatctagacc tgaatgcaat attagaagat
     7801 ttaccgatcg ctcaacaaca gttagtcgct atttgtcgag cgttagcaca aaatgccaga
     7861 ttattgatta tggacgagcc gactgcctca cttactgcaa aagaggtcaa agatctgtta
     7921 gatgtcgtca tcaaacttaa aagcaaaggc attagcatca tctttgtcag tcataaattg
     7981 caagaagtaa tgagtgtttc cgatagcgta ttagtgctga aagatggcaa tatggttggg
     8041 caatatccta tccgtgaaat gaatgaaaaa cgccttggtt tcctaatgac tgggctggaa
     8101 atcgattaca agcggttaga tttgccggat tttttgcaaa gaaaaaccgt attggaagtc
     8161 cgcaatttaa cgctgcctca tcagtatcaa gagattaact tttcgctacg agaaggggaa
     8221 attgttgccc ttacaggatt gctcggttca gggcgtactg agctttgcct aagtttattc
     8281 ggcattactc aaccacaatc cggcgatatt ttattaaacg gtgaaaaagt gatatttaac
     8341 actaaccgtg atgccattgc caaagggatt gcttatgtat cggaagatag aatgcacacc
     8401 gggctgatta tggcagagtc gattcatcac aatattattt cgactatttt tcacaaaatc
     8461 accgataaat tacagattat tcaatcctcg aaggcttatg caagtagcca agccttgatt
     8521 gattcattaa agattaaagt atccgattca gatttgcctg ttaataccct ttccggaggg
     8581 aacgcacagc gagtttcgat tgcaaaatgg ctggcaatcg accccaaaat tattatttta
     8641 gatgccccga ctattggggt cgatatcgcc aataaagaag ggatcttcca aattattaaa
     8701 tcattggctc agcaaggcat tgcagttatt tttgtgactg atgaagtgga agagacctac
     8761 tacaacagcc atcgggtaat tgtaatgaaa aaaggtcgca ttgttgatga aatcttgccg
     8821 gcatattcca gtgaaaaatc gattgcggag gttatttatg aaaatcagca ataatcatat
     8881 tctttccagt acgttactga ttttaatcct attattaacc ctatttactc gtgattttgc
     8941 aactattgag aacctttatg atgttgtaaa taattacgca atgttaatga ttttagcttg
     9001 tggtttattt gtggtattgc tgtctggcgg cattgatatt tctttccctg ctatcactat
     9061 tatttcccaa tatgttatgg tcactctgat cggtaaatat gatgtaggat ttgccggcgt
     9121 ttttgttatt tcttccacca tcggcatatt attaggtttt attaatgctc tatttgttaa
     9181 tcggcttagt gtcccttcca ttattattac gatctcaaca ctcaatattt tttatggcgg
     9241 actactctat tttaccaaag gtgtatggct ttatgagtat cccgaatggt ttacccaaga
     9301 aatcgtgttc tttaaacaga taactgctga gggagtggaa tttggattat cgtttcaagc
     9361 attaatggct attttggcgg tgatattaac cggcttaatt accaataaac tcactattgg
     9421 tcgaaaaatt tacgctcttg gtggtaatcc ggatgcaacc tcccgtattg ggtttaatct
     9481 cttatttctc catctatttg catacggtta tatgggcttt atggcaggct tggcaggcat
     9541 agtgcaatct tataccgtac aatctgtcgc accggattca ctactgggtt atgaattaac
     9601 cgtcctagct gccgttgtat taggtggtgc tagtttatca ggtggtagag gcaccctgct
     9661 tggtacagta atgggcgtaa tgttactggc gattattcaa aacgggctaa atttaatgaa
     9721 tgtatcgtct tactggcaaa ccattattac cggtatcatc attatcttaa gtattagtgc
     9781 aacagcctta agtcagcgga aaaaacaagg agcataacga tgaaaagtaa actggatcca
     9841 acgattttct atctcttagc actcttcgca gttgcagtta tcgcctttag tattttcatt
     9901 ccggatattt tttggtctgt cagtaacttt caatctatgg catcacaaat tccagtatta
     9961 ggtattttaa ccctagcaat ggcattaccg atgttaacag gtggaataaa tctttccatt
    10021 attgccggaa tgaatgcttg ctcattaatt attgcctact ttattacgca atataccggt
    10081 atttcttggt tatttattgc tattttatta agcctttgct gtgccttagc cattggatta
    10141 ctcaacggca cattaattgc cattattcgt gtttcaccaa ttttggcaac cttaggcaca
    10201 atgactttaa ttaacggcat taatattcta gtcactaacg gttcaaccat tgcgaacttt
    10261 ccggaaacaa tgttgagtat taatgcttca gcctttttat ggattccgct acccattcta
    10321 atctttctct ttcttgctgg gctgatttgg tttttcttag aaaaaactgc aatgggtaaa
    10381 gcggtttatt tcatcggcaa taatgaaaaa gccacctatt attcgggtat taataccaaa
    10441 aaagtgctga tttgggttta tgttatctcc tcaattcttt gtgtatttgc agctattttg
    10501 atgatgtcta aactcaattc tgcaaaagcc tcttatggtg attcctattt gttgatctcc
    10561 attttagccg cagtattggg cggtattaac cctgatggag gtaaagggaa actattaggg
    10621 attatgctcg ccttagtttt attacaagtg attgaaagtg gcttaaatat gctcggcatt
    10681 agcagttaca ttacaatgat tttatgggga agcttattgt tattctttat cttcctccaa
    10741 aaaaatcgcc ttttccgact aacacagtaa tggtggtaga ttatgcaaaa tgaaaaacaa
    10801 ctcattgaac aaggtaatac tgttattggt attgaattgg gctcaacccg aattaaagcg
    10861 gtgttaatta gctcagatgg gacgatttta gcaaccggtg gggcggattg ggaaaatcga
    10921 ctgattgacg gtatttggac ctatcatcaa aatgaaatat gggaaaaact acaagctgct
    10981 tatatggatt taagcaagac agtcaaagaa aaatatcaca caaccattcg cacagccaaa
    11041 gcattgggaa ttagtgcgat gatgcacggc tacttacctt tcgataaaca cggaaatccg
    11101 ctggttgcct ttagaacttg gcgaaacaac attaccctaa cctcatcgga aaaattgacc
    11161 gcactctttc aatacccaat tccgcaacgt tggagtattg ctcatttaca ccaagcattg
    11221 cttaaccaag agcctcactt gccggaaatt gattacctga caaccctctc aggttatgtg
    11281 cattggcaac tgaccgatca caaagtgtta gggattggcg atgcttccgg catgttcccg
    11341 atagatactg agttgaaatc ctacaatcca acaatgctgg ctcaatttga tcgagccatt
    11401 gccgactacc gtatgccttg gaaattggaa gcgattttgc cacaagttcg tgttgctggt
    11461 gaacaagcgg gcaaattaac cgaaaaaggt gcaaaattgt tagatccaac cgataatttg
    11521 caagctggca ttccactttg tccacctgag ggtgatgccg gaacaggtat gattgcaacc
    11581 aactgtatca aagaaaaaac cggtaatatt tctgccggca cctccgcatt tgcaatgatt
    11641 gtgttagaaa aagccctatc caaagcctat tcagagctgg atattgtgac gaccccggca
    11701 ggtaaattag tggcaatggc tcacgctaat aattgcacct ctgatattaa tgcgtgggtg
    11761 aatttattcg gcgaatgctt atcggttttt ggcgtaaata tctgcaccga agaactttat
    11821 gaaatgttat ttctccatgc cttgcaaggc gatgcagatt gtggagggct attatcctac
    11881 ggcttccact ccggtgaaca taatgtcggt ttatccgaag gctgtccggt tttcttgcat
    11941 ccaacgaatg cccattttaa cttagcaaac tttatgcgaa cccatctcta taccgctttt
    12001 ggtgcaatga aattaggaat ggacattctc attaaccaag aaaaagtgga aatttcccgt
    12061 attctcggtc acggtggtat atttaaaaca gaaggtgttg cacaaaaaat tctgtcttcc
    12121 gcactgaata ttccattggc taccgcaagt actgcttcaa atggcggagc ttggggaatt
    12181 gcattactgg cagactttct cagcgtatca gaccgttaca gtttagaaga atatttagat
    12241 aattgcattt tcaacaccac caaactcaat ctggttcaac cggataaaac aatgagtgaa
    12301 ggttatgaac gctttatgca acgttataag caaggcattc ctgtggtaga aaaa
//
LOCUS       DANLVT010000068        12188 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.068, whole genome shotgun sequence.
ACCESSION   DANLVT010000068 DANLVT010000000
VERSION     DANLVT010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12188)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12188)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12188
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.068"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..915)
                     /locus_tag="PXC99_001621"
     CDS             complement(<1..915)
                     /locus_tag="PXC99_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HDL5418065.1"
                     /translation="MPTKPHKEYHELVELLISRGMLINDKSYAEKKLSQVGYYRLSGF
                     WHISRKPNQDGGLSENFLENVQFEEVYKLYIFDKKLRLLLLDIIERLEVNIRNIMAHE
                     LGRENPLAYEDYSLINQKFLKFQWKSNYAYANWLETTANKIKRSKDDSIEWHRKNEKE
                     IPFWVITETWDFGALSKFYSLLNGQHQRKIAKKFNVDENTLKNWLNEINIVRNLSAHH
                     SRIWNRKFSDIAIPKLDDPRWSKFKKMQQYFSNLSLDDKAKERIFGRVAILWFLVSQT
                     STNYHWLDKFEDLLNDFPNLPNTKVELMG"
     gene            complement(1127..3244)
                     /gene="spoT"
                     /locus_tag="PXC99_001622"
     CDS             complement(1127..3244)
                     /gene="spoT"
                     /locus_tag="PXC99_001622"
                     /EC_number="3.1.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional GTP
                     diphosphokinase/guanosine-3',5'-bis pyrophosphate
                     3'-pyrophosphohydrolase"
                     /protein_id="HDL5418066.1"
                     /translation="MYLFEPLDRIIQGYLPPEQIERVKRAYVIARDAHEGQTRSSGEP
                     YITHPVAVASIIAEMKLDQEAVIAALLHDVIEDTPYTEEELAAEFGQSVADIVQGVSK
                     LDKLKFRTRQEAEVANFRKMILAMTKDIRVVLIKLADRTHNMRTLGALRPDKRRRIAK
                     ETLEIYSPLAHRLGIEHIKNELEDLGFEAMHPQRYRVLKMAIASARGHRKELIQRIAD
                     DIRGRLEEVQIEARVYGREKHLYSIYQKMRQKDQHFHSILDIYAFRVVVDNVDNCYRV
                     LGQMHALYKPRPKRVKDYIAVPKPNGYQSLHTSMIGPHGVPVEVQIRTEDMDKMADMG
                     VTAHWRYKEGESHHNTTVQLKAQQWLQSIVELQNSAGNTAEFIDSVKSDLFSDDIFVF
                     TPKGRIVELPANATAIDFAYAVHSGIGDRCVGAMVDRNPYPLSEPLRTGQTVEIITEQ
                     GKRPNASWLNFVVSGKARAKIRQSLKNQQHDEAIALGRRQLVRAMNLRSLDELCSETI
                     QSVLDELRLSSFDELLAEIGLGNQMSNVIAQRLLGEPLLIDTDGNPENNQPLKIEGIE
                     NRLISFANCCLPIPGDEIIAHVSSGKGLAIHNACCGNVKDYATEPSNYLPVEWEIAKE
                     KAIQFETEIVLDIINEPGVLAGITSTLAKLNSNIGSINSEAREGNIYQVRVQISVENK
                     EHSELILRKLLSVKGVVKAARKQ"
     gene            complement(3354..3635)
                     /gene="rpoZ"
                     /locus_tag="PXC99_001623"
     CDS             complement(3354..3635)
                     /gene="rpoZ"
                     /locus_tag="PXC99_001623"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HDL5418067.1"
                     /translation="MARVTVQEAAEKIGNRFDLILIAARRARQLQLHTREPLVPEEND
                     KPTVIALREIEEGLITTDIMDQLENHDSIKQEAAEQEAISFLTEMSNEA"
     gene            complement(3738..4235)
                     /locus_tag="PXC99_001624"
     CDS             complement(3738..4235)
                     /locus_tag="PXC99_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HDL5418068.1"
                     /translation="MAHFYEYLEFNSDEDRENQLEVYVEVKLSTDTEEKLQAVGVQGD
                     WLVMAEPYCPDCVEIVAYFQRMAKLNPNIKVKYVARKDNQERKHFDSDEQQQAVISAQ
                     KIPTIFDIRNGKTELVLSEFPQFLKDKMAANPEQFEQLKADFRMGKFGKEVEAELLAI
                     LLNTK"
     gene            complement(4260..5282)
                     /locus_tag="PXC99_001625"
     CDS             complement(4260..5282)
                     /locus_tag="PXC99_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005825060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5418069.1"
                     /translation="MSVTKKRLTLSDIAELSGVSKTTVSMILNGRGNDFRIKSETCQK
                     VKEIAKKHGYRANVYAKSLQAQRTNVIGLVIPDLTNYGFALTSRTLEKLCRENGLQLV
                     IACSDDTFEGEKKAIERLLDRQVDLLITAPTHNEPTYYQNAAQYTPMLQLDRYISGLN
                     IPSITSNDTQSISMLVENIVRAYHLKEFFYLGGQLSLSPSQNRLKGFREGLEQSHLAL
                     DENWVLHQDYQPESGYQMFAQIVEKLGRLPEAVFTASFTLLEGVMRYLTEHQQMDKLL
                     TQELHLATFDDHHLLNALPFHIHSIKQDHQQIAERTFELIQQKLAQQKIDDVKVDCEI
                     LWRKSI"
     gene            complement(5322..6752)
                     /locus_tag="PXC99_001626"
     CDS             complement(5322..6752)
                     /locus_tag="PXC99_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 32 protein"
                     /protein_id="HDL5418070.1"
                     /translation="MHIFNNGKYKSLHAQSEGELNALRQTVLSDPDFYPTYHLAPETG
                     LFNDPNGLIFDGEKYHIFAQWFPYGALHGMKHWQHFITTDFQTFSKGDLLIPDELFES
                     HGCYSGGAILWQDKIVAFYTGNTRRPSDNARIPHQNIAIFDKSGKLLEKRCIIDQAPA
                     GYTEHVRDPKPYLTAEGKIRFVLGAQRENLTGTALIYEMDDLNATPRLIAELEVHNFD
                     NSNVFMWECPDLFSLGGKDLFVWSPQGKLRESHQFQNNYHATYALGELNGNRLRAEHI
                     EELDYGFDFYAPQTVENSDRILFGWVGLPDLTYPTDKYQWHSMLTLPRKLSLQNGKVI
                     QNPIVNVGELQAVEMSENFAIENLDTAYLQISVENQPLVLDFFSNEQGQKLSLRFENG
                     VLSLDRSQTEQTELMEKFGSVRHCKIEQLETIEIFFDRSVVEIFVNGGEKVLTSRFFI
                     AKRENVVKSSRPIQVKVAKVLPISVE"
     gene            complement(6857..7780)
                     /locus_tag="PXC99_001627"
     CDS             complement(6857..7780)
                     /locus_tag="PXC99_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoimidazole riboside kinase"
                     /protein_id="HDL5418071.1"
                     /translation="MSKIWVTGDAVVDLIPDGEHHYLKCAGGAPANVAVGVSRLGVEA
                     GFIGRVGNDPLGKFMREVLQAENVCTKQMILDAQHRTSTVIVGLDNGERSFTFMVNPS
                     ADQFLEIGDLPEFNQGDFLHCCSIALINDPSRSTTIEGIRRVKKAGGYVSFDPNLRES
                     LWKSLDEMKTVVNSVVAMADILKFSEEELTLLTETETLEQATQAITAQYPEKLIIITL
                     GKDGAIYHFNGKSQVVAGKALKPVDTTGAGDAFVSGLLAGLAQTPNWHDETVLVEVIR
                     KANASGALATTAKGAMSALPNKAELDAFLAE"
     gene            complement(7897..9324)
                     /gene="miaB"
                     /locus_tag="PXC99_001628"
     CDS             complement(7897..9324)
                     /gene="miaB"
                     /locus_tag="PXC99_001628"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HDL5418072.1"
                     /translation="MAKLHITTWGCQMNEYDSSKMADLLNSTHGFELTENPEDADVLL
                     LNTCSIREKAQEKVFSQLGRWKNWKKDKPNLIIGVGGCVASQEGEHIRDRAPYVDIVF
                     GPQTLHRLPEMINQIRGGKSSIVDISFPEIEKFDRLPEPKAEGPTAFVSIMEGCNKYC
                     SFCVVPYTRGEEVSRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETFDGGICTFA
                     ELLRLVAAIDGIDRLRYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGSDRVLTMM
                     KRNHTALEYKAIIRKLRAVRPEIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFS
                     FIYSARPGTPAADLPDNVSDDEKKERLSRLQQRINHQAMQFSRAMLGTEQRILVEGPS
                     KKDLMELTGRTETNRVVNFVGTPDMIGKFVDVKITDVYTNSLRGEVIRTEDQMGLRVV
                     ESAESVIARTRKEDDLGVGKYVVNL"
     gene            complement(9541..10041)
                     /gene="crr"
                     /locus_tag="PXC99_001629"
     CDS             complement(9541..10041)
                     /gene="crr"
                     /locus_tag="PXC99_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005702996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HDL5418073.1"
                     /translation="MGLFDKLFGSKQKESQEIKIYAPLTGEIVNIEDVPDVVFSEKIV
                     GDGVAIRPSGDTIVAPVNGTIGKIFETNHAFSIESEEGVELFVHFGIDTVELKGEGFT
                     RLAQEGQTVKVGEPIIKFDLALLEGKAKSVLTPIVISNMDEISNLSKLNGQVVAGESV
                     VLTLTK"
     gene            complement(10126..11847)
                     /gene="ptsI"
                     /locus_tag="PXC99_001630"
     CDS             complement(10126..11847)
                     /gene="ptsI"
                     /locus_tag="PXC99_001630"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate-protein phosphotransferase
                     PtsI"
                     /protein_id="HDL5418074.1"
                     /translation="MITGIAASPGAVFGKALVLKEEPIVLNTRKITESEVEAEKAKFF
                     TGREKAAAQLTAIKEKARRTLGEEKEAIFEGHLMILEDEELEEEILSYLTDNLVTADV
                     AASKVIEMQASMLAEIDDEYLKERAGDIRDIGNRLVRNILNMNIVDLGDIQDEVILVA
                     YDLTPSETAQLNLDKVLGFITDVGGRTSHTSIMARSLELPAIVGTNNVTSLVKTGDFL
                     ILDAVNNEVHLNPSEEKIANFKALQEKLNAEKEELAKLKELPAQTLDGHKVDVAGNIG
                     TIRDVEGVLRNGGEAVGLYRTEFLFMDRTQLPGEEEQFQAYKEIVEAMNGQMVILRTM
                     DIGGDKELPYLDLPKEMNPFLGWRAVRIGFTRREILDTQLRAVLRASAFGNLAVMFPM
                     IISVEEIRLLKSIVAELKDQLRAEGHAFDENLKLGIMVETPSAAVNARHLAKEADFFS
                     IGTNDLTQYTLAVDRGNEIIAHLYNPLSPSVLNLIKQVIDASHAEGKWTGMCGELAGD
                     VRATALLLGMGLDEFSMSGISVPHVKKLIRSINFADAKALADEALAQPTAADIERLVD
                     EFYQKLN"
     gene            complement(11969..>12188)
                     /locus_tag="PXC99_001631"
     CDS             complement(11969..>12188)
                     /locus_tag="PXC99_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003038086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HDL5418075.1"
                     /translation="LHTRPAAEFVKAAKGFASDITVTSGGKSASAKSLFKLQTLGLTQ
                     GTTITISADGEDEQKAVDFLVDLIPTLE"
BASE COUNT         3452 a         2714 c         2246 g         3776 t
ORIGIN      
        1 tcccatcagt tctacttttg tattcggtaa attagggaag tcatttaata aatcttcaaa
       61 cttatctaac caatggtaat tagtgctggt ttgactaact aaaaaccaca gaatagctac
      121 ccttccgaaa attctctcct ttgctttgtc atccagcgat aagtttgaaa aatactgctg
      181 cattttttta aatttcgacc aacgaggatc atctagctta ggaatagcaa tatcgctaaa
      241 ttttctgttc caaatacgag aatggtgagc agaaaggttt cttacaatgt ttatttcatt
      301 caaccaattc tttaacgtat tctcatctac attaaatttc ttagcaattt tcctttggtg
      361 ttgcccattt aacaatgagt aaaacttaga taatgcacca aaatcccagg tttcagtaat
      421 tacccaaaaa gggatttcct tctcattttt tctatgccat tcaatagaat catctttact
      481 acgcttaatt ttattagctg tagtttctag ccaatttgca taagcataat tagatttcca
      541 ttgaaatttt aagaactttt gattaatcag agaataatct tcataagcca aaggattttc
      601 acgccccaat tcatgagcca taatattacg aatattaact tctaaacgtt caataatatc
      661 caataataaa agccttagtt ttttatcaaa aatatatagc ttataaactt cttcaaattg
      721 tacattttcg agaaaatttt cgctaagccc accatcttga ttaggctttc tagatatatg
      781 ccaaaatcca gataaacgat aataccctac ctgagataat tttttctctg catagctttt
      841 atcatttatg agcattcctc tagatatgag tagttctact aattcgtgat actctttatg
      901 tggttttgta ggcataaaat tgaaggcatt ttaagaaagg caaggacgta gcttgacact
      961 ctaagtcgat tacatttagt aaacctcagg gacaggggct acgccacgat tgcaagggat
     1021 tatacatttt agctgattaa agtcaaaagg tttcatcaat taataatagc aatactgtac
     1081 ttttaaggac tataattgca aaaaactgat aaaattttac cgcttgttac tgcttacggg
     1141 ccgcttttac aacacctttt acacttaata gcttacggag aatcagctca gaatgctctt
     1201 tattttccac agaaatttgt actctcactt gatagatatt tccttctctt gcctcgctat
     1261 taatgctgcc aatgttgcta tttaatttgg caagcgttga tgtgatcccc gcgagtaccc
     1321 ctggttcatt gataatatcc agtacgattt ccgtttcaaa ttgaatcgct ttttctttgg
     1381 caatttccca ttccacaggt aaataattac tcggctctgt tgcgtaatct ttcacattac
     1441 cacaacaagc attgtggatt gccaatcctt tacctgaact gacgtgagca ataatttcat
     1501 cacccggtat aggtaagcaa cagtttgcaa aactgataag gcggttctca atcccttcaa
     1561 ttttaagcgg ttgattattt tctggattac catcagtatc aattaatagt ggctccccta
     1621 ataagcgttg agcgataaca ttactcattt ggttacctag accaatttca gccagtagct
     1681 catcaaagct tgataaacgt agctcgtcta atacggattg aatagtttct gaacacaatt
     1741 catcaagtga gcgtaaattc attgcccgaa ctagctgtct acgcccaagt gcaatcgcct
     1801 catcgtgctg ctgattttta agcgattgac gaattttagc cctcgcctta ccacttacta
     1861 caaaatttaa ccacgatgca tttgggcgct taccttgctc ggtaataatt tccaccgtct
     1921 gtcctgttcg tagcggttct gaaagtggat acggattgcg atcaaccatc gcacctacac
     1981 aacgatcccc aatgcctgaa tgcaccgcat aggcaaagtc aatagcggta gcattcgccg
     2041 gcaattcaac aatacgccct ttcggggtaa agacgaaaat atcgtcagag aacagatccg
     2101 atttaacgct atcaataaat tctgctgtat tgccggcact gttttgcaat tcaacaatac
     2161 tttgtagcca ttgctgggct ttgagttgaa cggtcgtgtt atggtgcgac tcgccctctt
     2221 tgtaacgcca gtgagctgtt acccccatat ccgccatttt gtccatatct tcggtgcgaa
     2281 tctgtacctc caccggtaca ccgtgcgggc caatcatcga agtgtgtaaa gattgatagc
     2341 cgttcggttt tggcacggca atataatctt tcacccgttt cggacgaggc ttatacagtg
     2401 cgtgcatctg ccctaataca cggtaacaat tatctacatt atcaaccact actcggaaag
     2461 cataaatatc taaaatcgaa tgaaaatgtt gatctttctg gcgcattttt tggtaaatgg
     2521 aatagagatg tttttcacgc ccatacacac gggcttcaat ttgcacctct tctaaccgac
     2581 cacgaatatc atcggcaatg cgttgaatta gctctttacg atgtcctctg gcactggcaa
     2641 tagccatttt cagtacccga taacgttgcg ggtgcattgc ctcgaagcct aaatcttcca
     2701 actcgttttt aatatgctct attcccaagc gatgtgccaa cgggctataa atctctaagg
     2761 tttctttcgc tatacggcgg cgtttatccg gacgcaaagc accaagcgta cgcatattat
     2821 gggttcggtc ggcaagttta attaacacaa cccgaatgtc tttggtcatt gccaaaatca
     2881 ttttacggaa gtttgccact tctgcctctt ggcgggtgcg gaattttaat ttatccagct
     2941 tagaaacgcc ttgtacaata tctgctacgc tctgtccaaa ttccgccgcc agttcttctt
     3001 cggtgtaagg tgtatcttca atcacatcgt gcaacaaagc cgcaatcacc gcttcttgat
     3061 cgagcttcat ttccgcaata atcgacgcca ctgctaccgg gtgagtaata tagggctcac
     3121 cgctagagcg tgtttgtccc tcgtgagcat cacgggctat cacataagca cgttttacac
     3181 gctcaatctg ctcgggtggc aaatagcctt gaataattcg atctaaaggt tcaaaaagat
     3241 acacgttata cctcaacaac agaaataaaa atggacaacg aatttgcaaa ttttgaggaa
     3301 aatcctaccg cttgcagact caattgtcca ttctctattt acgaaaaata aaattacgct
     3361 tcgttgctca tttcagttaa aaatgaaatc gcctcttgct ccgccgcttc ttgcttaata
     3421 gagtcgtgat tttccagctg atccataatg tcagttgtaa ttaaaccttc ttcaatttca
     3481 cgtaatgcaa tcacggtcgg cttatcgttt tcttcaggca caagtggctc acgggtgtga
     3541 agttgtaatt gtcttgcacg acgtgcagca attaagatta aatcaaaacg gttgccaatt
     3601 ttctccgctg cttcttgtac ggttacacga gccataaatt tactccaaag atttattcgg
     3661 ttttattcat aaaaagattg cgaattatac agaaattccg ccaattccgc aatgaaagcg
     3721 ggctaaattc acaaaattta tttggtattc agtaaaatcg ccaataattc agcctcaacc
     3781 tctttgccga attttcccat tctaaaatcg gcttttagtt gctcgaattg ctcagggttc
     3841 gctgccattt tatcttttaa aaattgcgga aattcagata acactaattc tgttttgcca
     3901 ttacgaatat caaaaatagt tggaattttt tgcgcagaaa tgaccgcttg ttgctgttca
     3961 tcgctgtcaa aatgtttgcg ttcctgatta tctttgcgag ccacatattt caccttaatg
     4021 ttaggattga gctttgccat tcgctggaaa taagccacaa tttccacaca atcggggcaa
     4081 tatggctctg ccattaccag ccagtcccct tgcacgccaa cagcttgcag tttttcttcc
     4141 gtatctgtgg aaagcttgac ctccacatac acttctaatt gattttcacg atcttcatcg
     4201 ctgttaaatt ctaaatattc gtaaaaatgt gccataattt tgtcttttcc tatctcatct
     4261 taaatggatt tacgccataa aatttcacaa tcaactttaa cgtcatctat tttctgttgc
     4321 gctaactttt gctgaattaa ttcaaaggta cgttcggcaa tttgttggtg gtcttgctta
     4381 attgaatgaa tatgaaaagg tagtgcattc agtaaatggt gatcatcaaa ggttgctaaa
     4441 tgcagttctt gagtcaataa tttatccatt tgttggtgtt cagtcagata gcgcattact
     4501 ccctcaagta gggtaaaaga ggctgtgaat accgcttctg ggagcctgcc aagtttttca
     4561 actatctgag cgaacatttg atagcccgat tccggctgat agtcttgatg cagaacccaa
     4621 ttttcatcaa gtgccaaatg tgactgctcc aaaccttcac ggaagccttt taaacgattt
     4681 tgacttggcg agagtgaaag ttgtccacct aagtaaaaaa actcttttaa gtgataagcc
     4741 cgtacaatat tttccaccaa catactgata ctttgtgtat cattactggt gatagaaggg
     4801 atattcaacc cagaaatata gcggtctagc tgtaacattg gggtatattg tgccgcattt
     4861 tgataataag tcggctcatt atgtgtcgga gcagtaatca gtaaatctac ctgtctgtct
     4921 aataaacgct ctatcgcttt cttctcacct tcaaaggtat catccgagca agcgatcact
     4981 agctgtaacc cgttttcacg gcataatttc tctaaggttc ttgaggtcag agcaaagcca
     5041 taattcgtta aatcgggaat gactaaaccg atcacattcg tgcgttgagc ctgtaatgat
     5101 tttgcatata cattagcacg ataaccgtgt tttttagcga tctctttcac tttttggcag
     5161 gtttcggatt tgattctaaa atcattgccc cgcccattta aaatcatact gactgttgtt
     5221 ttagatacgc cgctgagttc cgcaatatca ctgagcgtta ggcgtttttt agtcacactt
     5281 atctcctttt agcataaaaa tgggcattac tgcccattgc tttattctac gctaattggc
     5341 aatacttttg ctactttcac ttgaatcgga cgagagcttt ttacgacatt ttcacgctta
     5401 gcgataaaaa agcgtgaagt cagcactttt tccccgccgt ttacgaaaat ttccaccaca
     5461 gaacggtcaa agaaaatctc gattgtctct aattgttcaa ttttgcaatg acgaaccgag
     5521 ccaaattttt ccatcaattc tgtttgttcg gtttggctac gatctaagct caacacccca
     5581 ttttcaaaac gtaagctgag cttttgcccc tgttcattgc tgaaaaaatc caacacaagc
     5641 ggttgatttt ccacagaaat ttgcaagtag gcagtatcca aattctcgat tgcaaaattt
     5701 tctgacattt cgaccgcttg taattcgcct acattcacga ttgggttttg tatcactttg
     5761 ccgttttgca gggaaagttt acgaggcaat gtcagcattg aatgccactg atatttatca
     5821 gttgggtaag tgagatcagg caagccgacc cagccaaaca aaatgcgatc ggaattttcc
     5881 accgtttgcg gtgcgtaaaa gtcaaagccg tagtccagct cttcaatatg ctctgcccgt
     5941 aatctgttgc cgtttagctc gccaagtgcg taagtggcgt ggtagttatt ttggaattga
     6001 tggctttcac gcagtttgcc ttgtggcgac cacacaaaca gatctttacc accaagtgag
     6061 aacagatccg gacactccca cataaacaca ttgctgttat caaaattgtg gacttccagt
     6121 tctgcgatta aacggggtgt ggcatttaaa tcgtccattt cataaattaa cgccgtgccg
     6181 gtcaagtttt cacgctgagc ccccaacaca aaacgaattt tgccctctgc ggtaaggtaa
     6241 ggtttcgggt cacgcacgtg ttcggtgtag cctgccggtg cttggtcgat aatgcaacgc
     6301 ttttccaata atttgcccga tttatcaaaa atcgcgatat tttggtgagg aatgcgggca
     6361 ttatctgatg ggcggcgtgt attgccggtg taaaaagcga caatcttatc ttgccataaa
     6421 atcgccccac ctgaataaca gccgtgggat tcaaacagct catcgggaat cagcaaatcc
     6481 cctttactga acgtttgaaa atcggtagtg atgaaatgct gccaatgttt cattccatgt
     6541 aatgccccat aaggaaacca ttgggcgaaa atatggtatt tttcaccatc gaaaatcaag
     6601 ccgtttgggt cattaaataa gcctgtttcg ggagcgagat gataggttgg gtaaaaatcg
     6661 ggatcagata aaacggtttg gcgaagagcg tttaattcgc cctcgctttg tgcgtgcagg
     6721 cttttgtatt tgccgttgtt gaaaatgtgc atagagtgtt cctgtcattt cagaaattac
     6781 gatggtgcaa gcgtccacgc ttgtaccctt ttgtaaaaaa tgaggcacaa gcgtggacac
     6841 ttgcgccatc attacattat tccgccaaaa atgcgtctaa ctccgcttta ttcggtaatg
     6901 ccgacatcgc cccttttgct gtggtggcta acgcaccgga agcatttgct ttgcggatca
     6961 cttcaactaa cacagtttca tcgtgccaat tcggcgtttg agcaagaccg gctaataatc
     7021 cgctgacaaa ggcatctccg gcaccggtgg tatccacagg tttcaaggct ttgccggcaa
     7081 cgacttggct ttttccgttg aaatggtaga ttgcaccgtc tttgccaagg gtgataataa
     7141 tcaatttctc cggatactga gcggtaatag cttgtgtggc ttgttccaaa gtttctgtct
     7201 cggttaataa ggtcagctct tcttcggaaa atttgagaat atccgccatc gccaccacag
     7261 aatttaccac tgttttcatt tcatcaaggc tcttccagag cgattcacgc aagtttggat
     7321 caaacgaaac atagccaccc gcctttttca ctcggcgaat cccttcaatg gtagtggaac
     7381 gggatgggtc gttaatcaag gcaatagaac agcagtgtaa gaaatcacct tggttaaatt
     7441 caggtaaatc gccgatttct aaaaattggt cggcactcgg atttaccata aaagtaaaac
     7501 tacgctcacc gttatctaag ccaacaatca cggtggaagt gcggtgctga gcgtctaaaa
     7561 tcatctgttt ggtgcaaaca ttttctgcct gtaacacttc tcgcataaat ttacccagag
     7621 ggtcgttacc cacacgcccg ataaatcctg cctcaacccc taaacgagaa acgcctactg
     7681 caacattcgc cggagcacca ccggcacatt ttaaatagtg atgttcgccg tcgggaatta
     7741 aatccaccac cgcatcgcct gttacccaaa tcttactcat ctcatacacc tttaattagt
     7801 cacaaaacac caagctaaaa cgatttagca tttattcgat tatatactaa aagaccgctt
     7861 gtacatacct acaagcggtc attttttctt taatttttac agattaacca cgtatttacc
     7921 tacacctaaa tcatcttctt tacgagtgcg ggcaatcacg ctttctgccg attccaccac
     7981 acgtaatccc atttggtctt cggtacgaat cacttcgcca cggagtgagt tggtataaac
     8041 atcggtgatt ttcacatcga caaatttgcc aatcatatcc ggtgtgccaa caaagtttac
     8101 tacacggtta gtttcggttc tgccggttaa ttccatcaag tctttcttag acgggccttc
     8161 aaccaaaatg cgttgttctg taccgagcat tgcacggcta aattgcattg cttggtggtt
     8221 gatgcgttgt tgtaaacggg ataatcgctc ttttttctca tcatcggaga cattatcagg
     8281 cagatctgcc gctggtgtac ccggtcgagc cgagtagata aagctaaagc tcatatcaaa
     8341 gttcacttgc tcgatcactt tcattgtttg ctcgaaatcc tctgcggttt cgcccgggaa
     8401 gcctacaata aagtccgaac taatttgaat ctcaggtcga acagcacgca atttacggat
     8461 aatcgctttg tattccaacg ctgtgtggtt acgcttcatc attgttaata cacggtctga
     8521 accactttga atcggtaaat gtaagaaact gaccaattca ggtgtatcac gataaacttc
     8581 gataatatca tcggtaaatt caatcgggtg gctggtggtg taacgtaagc ggtcaatacc
     8641 gtcaatcgct gccactaagc gtaataattc ggcaaaggta caaatgccgc catcaaaagt
     8701 ttcaccacgg taagcattta cgttttgacc gagtaaatta acctcacgca caccttgtgc
     8761 cgcaagttgg gcgatttcaa ataatacgtc atccaccggg cgggaaacct cttcgccacg
     8821 agtgtaaggc acaacgcaga acgaacaata tttattgcag ccttccataa ttgaaacgaa
     8881 tgctgtaggg ccttcggctt ttggctccgg caagcggtca aatttttcaa tttccgggaa
     8941 agaaatatcg acaatcgagc ttttaccgcc acggatttgg ttgatcattt caggcaaacg
     9001 gtgcaaagtt tgtggcccga aaacaatatc tacataaggg gcacgatcac ggatatgctc
     9061 cccttcttgt gaagccacac aaccgccaac accgataatc aggttcggtt tatctttttt
     9121 ccagtttttc caacgcccga gttgcgagaa tactttttct tgtgcttttt cacggataga
     9181 acaagtgttt agcagcaaca cgtctgcatc ttcagggttt tcagtcagtt caaaaccgtg
     9241 agtagagttt aggagatccg ccatttttga tgagtcgtac tcattcattt ggcagcccca
     9301 agtggtaata tgtaatttag ccataacgtt taaaattaat aaataattca ataacttaga
     9361 aaagaaaagc gtaaagcaat ttattatttt tgacttaaaa taaacccttt acgcaaaatt
     9421 tgtggcgtta ttttaccttg ttgcctattt tttatctata aataatcgcc atttatccga
     9481 ttttacctaa aacaaaaaag ccacgatctt ccatcgtggc ttccagctaa gtaggaggta
     9541 ttatttggtt aaggttaaaa ccacgctttc accggcaaca acttggccat ttaatttaga
     9601 taagttgctg atttcatcca tatttgaaat cacgattggt gttaatactg atttggcttt
     9661 gccttcaagt agagctaaat caaatttaat gatcggctcg cccactttta cggtttgacc
     9721 ttcctgtgca aggcgagtaa agccttcgcc ttttaattca acagtatcaa taccgaagtg
     9781 aacaaataat tccacgcctt cttcagattc aatcgaaaaa gcgtggttgg tttcaaaaat
     9841 tttgccgata gtcccattta ctggagcaac gatagtgtct ccactcgggc gaattgccac
     9901 accgtcacct acaatttttt cagagaaaac aacatcaggc acatcttcaa tatttacgat
     9961 ttcacctgtt aatggcgcat agattttgat ttcttgactc tctttttgtt ttgagccgaa
    10021 taatttatca aataaaccca tcttaaaatc tcccttagat attagataca aaattctcgt
    10081 acattttata cgagaatttt gtatttgtat gctaaataat taaaattagt ttaatttctg
    10141 ataaaactca tctactaagc gttcaatatc tgcagcagtt ggctgagcaa gcgcctcatc
    10201 agctaatgct ttagcatcgg caaaattaat tgagcgaatg agttttttaa cgtgtggcac
    10261 agagataccg ctcatactaa attcatctaa tcccataccg agcaacaacg cagttgcacg
    10321 cacgtcaccg gctaattcac cacacatacc tgtccatttg ccttcagcgt gtgaagcatc
    10381 aataacttgc ttgattaagt ttaagactga tgggcttaat gggttatata aatgagcaat
    10441 aatttcatta ccacgatcta ccgcaagtgt atattgggtt aagtcattag taccaatact
    10501 aaagaagtcg gcttcttttg caagatgacg tgcatttacc gctgctgatg gggtttccac
    10561 cataatacct agttttaagt tctcatcaaa agcgtgacct tctgcacgta attgatcttt
    10621 caattccgca acgatggatt ttaataaacg gatttcttcc accgaaataa tcatcgggaa
    10681 cattaccgct aaattaccga acgcagaagc acgtaatacc gcacgtaact gagtatctaa
    10741 aatttcacgg cgggtgaaac cgatacgcac cgcgcgccaa cctaagaatg ggttcatttc
    10801 tttcggtaaa tcaaggtatg gtaactcttt atcacctccg atatccatcg tacgcagaat
    10861 gaccatttga ccattcattg cttcaacaat ctctttgtag gcttgaaatt gctcttcttc
    10921 tcccggtaat tgagtacgat ccataaacaa aaactcagta cggtataaac caaccgcttc
    10981 accaccgttg cgtaatacac cttccacatc acggatagta ccgatattcc ctgccacatc
    11041 aactttatgg ccatctaatg tttgagcagg caactctttt aatttggcta attcttcttt
    11101 ttccgcattt aatttctctt gtaatgcttt gaaattagcg attttttctt ccgatggatt
    11161 taaatgtact tcattgttca ctgcatctaa aatcagaaaa tcaccagttt taactaggga
    11221 agtaacattg ttagtaccaa caatggcagg aagctctagg gaacgagcca taatagaagt
    11281 gtgagaagta cgaccaccga catcggtaat aaagcctaat actttatcta aatttaattg
    11341 agctgtttcg gaaggggtta agtcataagc gactaaaata acttcatctt gaatatcacc
    11401 aagatctacg atattcatat ttaaaatatt gcgtaccaag cggttaccaa tatcacgaat
    11461 atcacctgca cgttctttta aatattcatc gtcaatttcc gcaagcattg aagcctgcat
    11521 ctcaatcact ttacttgctg caacatccgc agtcacaaga ttatcagtaa ggtaactcaa
    11581 aatttcttct tcaagctctt catcttctaa gatcatcaag tggccttcga aaatcgcctc
    11641 tttttcctca cctaatgtac ggcgagcttt ttctttaatc gcggttaatt gagcagctgc
    11701 tttttcgcgg cctgtaaaga attttgcttt ttctgcctca acttcgcttt cagtaatttt
    11761 gcgagtattt agtacaatcg gctcttcttt taaaaccaat gcttttccaa atactgcacc
    11821 aggggaagct gcgatacctg taatcataat tgtgtcctta atttaagatg atgtaaaaat
    11881 catctggatg ttacatagca aaacacttta ttgtagctta ttaagctaca ataaagtgac
    11941 ataaatctta aatccgagaa tagaaaaatt attctaaagt aggaatcaaa tcaactaaga
    12001 aatcaactgc tttttgctca tcttcgccgt ccgcagaaat tgtaattgtt gtgccttgag
    12061 tcaaacctaa tgtttgtaat ttgaataagc tttttgcact tgcactttta ccacctgaag
    12121 tcacagtgat atcagaagca aaacctttag ctgcttttac aaattcagcc gctgggcgag
    12181 tgtgtaaa
//
LOCUS       DANLVT010000069        12179 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.069, whole genome shotgun sequence.
ACCESSION   DANLVT010000069 DANLVT010000000
VERSION     DANLVT010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12179)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12179)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12179
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.069"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(217..1350)
                     /locus_tag="PXC99_001632"
     CDS             complement(217..1350)
                     /locus_tag="PXC99_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDL5418076.1"
                     /translation="MKTIKIGLVGTGYIGRCHAIAYAQAPTLFPLKGKIQLEYLAEIN
                     QALADQKAREFGFQRATDDWRKLVTDPNVDVVDICTPNFLHKEIALEAIKHGKHVYSE
                     KPLALTAQDAKEMVIAAQQAGVKTLVGFNYIKNPTTQLARQIIQNGEIGEVVHFYGTH
                     NEDYLANPNTPIDWHCYKAKAGLGTLGDLAAHIVSIAHYLVGSDIERVIGDMQTVIEE
                     RPSPHNPAEKIKVENEDQASSLIRFANGVMGTLESSRISCGRKMGLTYVVTGTKGTLS
                     YTQERMAELKLYLHDDDKSRQGFKTILVGPEHPDYAAFCVSAGHGIGFNDQKAVEIRD
                     LINGIAADDPMYPDFEEGYKISRVLEAIAKSAEEKRWVEVSEI"
     gene            complement(1481..2509)
                     /locus_tag="PXC99_001633"
     CDS             complement(1481..2509)
                     /locus_tag="PXC99_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5418077.1"
                     /translation="MTTQFLKNMGMVDDKGKIDFIAFFERFGVLIFLILLIIFFTSQN
                     GAFLSQRNIYNVLTEVSIFGIMAVGMTFVILTAGIDLSVGSILAVTAMFAAYIIKGDN
                     TVTLEAGAWGGMSWLIGLSICLGLGTFIGWLHGLGVTKLKLPPFIITLGGMTIWRGLT
                     LVLNNGSPIAGFDEGYRWWGRGDILGVPVPVVIFAVVAIIGYFALHKTRWGRYVYSVG
                     GNPEAARLAGVNINRTLVSVYVVIGALAGLAGFILSARLGSAESVAGVSFELRVIASV
                     VIGGTSLMGGYGRVTGTIIGSIIMGVLINGLVLMDVSAYYQQIIMGLIIILAVAFDTY
                     AKSRRGAL"
     gene            complement(2521..4065)
                     /locus_tag="PXC99_001634"
     CDS             complement(2521..4065)
                     /locus_tag="PXC99_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL5418078.1"
                     /translation="MSTPLLEVKDLTKSFSGVMALNGVKLTVGKGEVHALLGENGAGK
                     STLLKALSGAQPQTSGEIIFNGETLSLSDSPFDRQLKGIVTIYQEFNLLPNMTVAENF
                     FLGREPVKGLFVNEKAVNEEAQLVLDNLGLNIKPDTQVSRLSVAQQQMVEIARAMTLN
                     AKLIIMDEPSAALSDKEVETLHQIVRDLKSRGISVIYVTHRLNEVFALCDRFTVFQDG
                     RYSGEGEVKNVNVDQIIKMMVGREVAFTRRPPEETHHTHRPIRLAVKNLHREKPAFDP
                     HGIALHGVSFNIHEGEVLGIAGLVGAGRTEIARCLFGVENYTADEISLDGKPYAATSP
                     LDALEKGVALVPEDRKKEGLVLGLPIKTNMTLPILSKLLKGNLFVDNQKEDDLIETYR
                     QALRIKMASSELEARKLSGGNQQKVILARCMALNPKVLIVDEPTRGIDVGAKSEVHQV
                     LFDMAKQGVAVLVISSDLPEIMAISDRIITLSEGRVTGEIHGDDATEEKLMSMMAVGV
                     QRKAAA"
     gene            complement(4116..5054)
                     /locus_tag="PXC99_001635"
     CDS             complement(4116..5054)
                     /locus_tag="PXC99_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HDL5418079.1"
                     /translation="MKKRIKFVLSALTLGLAMNSFAKDELVVFSLPNLSSPFEVQLQK
                     VAVETSKKLEIKLQVLDGQSSSTKQASDLENAITRGAKGIIISPNDVNAISGAVEEII
                     KEKIPAATLDRKVESSKPVPHFGANNYTGGQEVAKAVKAKYPNGAKIILLTGQPGSTS
                     NIERTKGIRDELAAGGDKYKIVVDQTGNWLRSEGLRIIESVLPTLKEKPEVIISANDD
                     MALGAIEALRSQGLKAGDILVTGFDSTPEALARVKDGWLYLTADQRPSFAVSTALEQV
                     VGNIRESKEVSGADYPPKIILKDNLQEAERFAEISE"
     gene            complement(5386..6897)
                     /locus_tag="PXC99_001636"
     CDS             complement(5386..6897)
                     /locus_tag="PXC99_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-acylating methylmalonate-semialdehyde
                     dehydrogenase"
                     /protein_id="HDL5418080.1"
                     /translation="MSQFVQNFINGAVVESQSQRVTSVFNPATGEETKKVKLSLPNEV
                     DAAIAAADQAFKSWSQQSPLRRARILFKFKELLEANFDELARLISSEHGKIYSDAIGE
                     LTRGLEVVEFATGIPHLQKGEFSANAGRGIDIHSIQQPLGVVAGITPFNFPAMVPMWM
                     FPVALACGNTFVLKPSEKDPSVSIRLAELLKEAGLPDGVFNVVQGDKEAVDILLTDSR
                     IQAVSFVGSTAIAQYIYEKGSANGKRVQALGGAKNHALIMPDADVQGTINALLGAAFG
                     AAGERCMALSVAVVVGDELADKIIEELIPKVKALKIGSGLLPQGVLENDMGPVISKEH
                     KAKIESYIDQGVAQGAKLCVDGRGYKVEGFENGYFVGGTLFDNVTPEMTIWQDEIFGP
                     VLSVVRVKDYAEGIALINSHQYGNGSAIFTADGDSARQFTQDVQAGMVGVNIPIPVPM
                     AFHCFGGWKASIFGPLNVYGTDGVRFYTRMKTITTRWPDSSVRSQAAFNFPTL"
     gene            7116..7940
                     /gene="iolB"
                     /locus_tag="PXC99_001637"
     CDS             7116..7940
                     /gene="iolB"
                     /locus_tag="PXC99_001637"
                     /EC_number="5.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-deoxy-glucuronate isomerase"
                     /protein_id="HDL5418081.1"
                     /translation="MSSPLLSKPNFNQHEGLIQHITPENAQWEYVGFDVYQLSKQQIT
                     LESGENELCLVFVTGFGSVYVDDYAFENIGNRTTPFEKIPPYAVYIPPHKSVLVKTEL
                     NLELAVCKAPSQGNYPVRLISPNHIGVEKRGFGNNQRLVHNILPETEAADSLLVVEVF
                     TDEGNTSSYPSHKHDDKHSTEETYLEETYYHRFDPPQGFAMQRVYTDDRTLDECMAVY
                     DKNVVKVPRGYHPVATIAGYNNYYLNVMAGPVRKWKFTWEQDHLWVNSETYKAKFE"
     gene            complement(8016..9467)
                     /locus_tag="PXC99_001638"
     CDS             complement(8016..9467)
                     /locus_tag="PXC99_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HDL5418082.1"
                     /translation="MPNHKFLLLRFQAYINGKFVSSQNGKTFTVQNPTNGEKIGEVAD
                     LGTEETAQAIEAAAVAQKKWQALLPKERSVILRKWFELIMQNQEELAQILSLEQGKPL
                     AESRGEIAYGASFIEWFAEESKRIYGDVLPQDKAGRRLFVTKQPIGVVAAITPWNFPN
                     AMITRKAAPALAAGCAIVIKPAAETPLSALALAQLADQAGIPKGVFNIITSSDVEGVG
                     RELSTNPTVRKLTFTGSTRVGKILMQQSAGTVKKLALELGGNAPAIVFDDADLDTAVE
                     GVFASKFRNGGQTCVCANRIYVQAGIYEQFLAKLSEKVAQIKLGSPFEEEVTIGALIS
                     ERAVEKVESHINDALSLGAELVLGGERHALGGTFFQPTILKNVTQAMKVAREETFAPL
                     APIFKFETEEEVIQWANDTEFGLAAYLFSQNIGRIWRVSEQLEYGIVGINEGIISNEI
                     APFGGWKESGLGREGSKYGIEEFLEIKYLCMKV"
     gene            complement(9645..10955)
                     /locus_tag="PXC99_001639"
     CDS             complement(9645..10955)
                     /locus_tag="PXC99_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL5418083.1"
                     /translation="MIYAEIFVVLAAIYLGLRSGGLGIGLYGGLGLAILTLGFGLPMG
                     SIPVDVMLIIMTVVIGAAVLQAVGGMDLLVRYAEVLMRKNPKYINFIAPMITWLMTIM
                     AGTGFIVFSTLPVIAEVAKESGIRPSRALAGSVVSSQLAIAGSPLSAAMAAMIAVMEN
                     NSVTFFQVIAVCLPVSFIASMVAAFVASKQGCELQNDVVYLERLKAGIVSPSRKLASE
                     STYSKGAKLSIGIFLLATVLVVLLAAVPGLKPVYENGKSMSTRDIIIVMMLASSCLMM
                     LVGKIKPDTIVASPIFRSGMTSIAVIIGIVTLGMTFVDAHLIEIKASIGNILTEYPML
                     LAVVLFFTCALLYSQGSTSALIIPLAVSLGIPNWAILASFIAITGIFILPTYPTSLAA
                     MELDTTGSTRAGKYIIDHPFMLPALVGVAVGLAFGFVWAPMIVS"
     gene            complement(10971..11666)
                     /locus_tag="PXC99_001640"
     CDS             complement(10971..11666)
                     /locus_tag="PXC99_001640"
                     /EC_number="5.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid racemase"
                     /protein_id="HDL5418084.1"
                     /translation="MARNIIGILGGMGPAATADMFQKFIRLTPADCDQAHIPLLISSI
                     PDIPDRTRYILANGENPAPVMEKYIEGLESAGATCIIIACNTAHYWFEHLKAKSQVEM
                     LSMIDCVVDEVLKCGKWRVGLLATDATLAVDLYKKQLEAQGLTFICPTENGQKAVMDS
                     IYLLKSGELEKATELMLQQRDELIRLGAEVIILGCTEVPIILAQEIEREPMRYVDSTL
                     VLVKKAIDWYQTH"
     gene            11882..>12179
                     /locus_tag="PXC99_001641"
     CDS             11882..>12179
                     /locus_tag="PXC99_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5418085.1"
                     /translation="MKNIETKWLEDFLTLEECRHFSQAAEKRNLSQSAFSRRILALEE
                     VVGVKLFDRTSIPLQLTEQGKLFHSQTRNLLQQLQNNLDELLGHNCNLPNIKFAA"
BASE COUNT         3524 a         2813 c         2390 g         3452 t
ORIGIN      
        1 cgcaatatag ataggcactt gatgaacaag ttggaagtaa gcatccaaat aaacaactat
       61 caatatgaag cctaaaaacc attctgtttg cataagaaca ttgatagggc tgttttttgt
      121 gctaaaaatt tctttaattg aactcataat ttttccttaa atgtaaaaaa acgtacctca
      181 accaatttga gatacgtttc tattttaatg taattattaa atctcactca cctccaccca
      241 ccttttctcc tccgccgatt ttgctatcgc ttccaatact ctggagattt tatagccttc
      301 ttcaaaatcg ggatacatcg ggtcatcagc ggcgatgccg ttgatgaggt cacggatttc
      361 caccgctttt tggtcgttaa aaccgatgcc gtgaccggca ctcacacaaa aagcagcgta
      421 gtcgggatgt tccgggccga ctaaaatggt tttgaatcct tggcgggatt tatcgtcatc
      481 gtgcaaatag agtttgagtt ctgccattcg ttcttgggta tagctgagcg tgcctttagt
      541 acctgtaacg acataggtca gccccatttt acgcccgcag gaaatgcggg agctttcgag
      601 cgtgcccatt accccattag caaatcgtat gagactactt gcctgatctt cgttttctac
      661 tttgattttt tctgctggat tgtgcggact agggcgttct tcaatcactg tttgcatatc
      721 gccgataaca cgctcaatgt ctgaaccaac caaatagtgt gcgatactga caatatgtgc
      781 ggctaaatct cccaacgtac caagcccggc tttggctttg tagcagtgcc aatcaatcgg
      841 ggtattaggg ttggcgagat aatcttcgtt atgcgtgccg tagaaatgca ccacctcacc
      901 aatttcgccg ttttgaataa tttggcgagc cagttgggtg gttggatttt tgatatagtt
      961 gaaaccgacc aaggttttaa ctcccgcttg ttgagcggca atcaccattt ctttggcatc
     1021 ttgggcggtg agtgcaagcg gtttttctga atagacgtgt ttgccgtgtt taatcgcttc
     1081 taaggcaatt tctttgtgca gaaaatttgg tgtacaaatg tccaccacat cgacattcgg
     1141 atcggtaacc aattttcgcc aatcgtcagt agcacgctga aagccaaatt ctcgggcttt
     1201 ttgatcggct aatgcttggt tgatttcggc aaggtattcc agttggattt tgcctttaag
     1261 tggaaacagg gttggggctt gagcgtaggc aatggcgtgg cagcgaccga tatagccggt
     1321 gccaactaag ccgattttga tggttttcat aatactatcc cagtagggtg cgtttgctaa
     1381 cgcaccatta gaattttcag tgcattggca aacgcaccct ataagaaagc ggtctggttt
     1441 tgcaaaattt ttacaaaatc agaccgcttg tgttagctat ctataatgct cctcgtctgc
     1501 tcttcgcata ggtgtcgaag gcaacggcaa ggatgatgat taagcccata atgatttgtt
     1561 ggtagtaagc ggaaacgtcc attagtacta aaccgttaat caatacaccc ataataatgg
     1621 agccgatgat ggtgcctgtg actcgtccgt atccccccat tagggaagtt ccgccgataa
     1681 ccactgaggc aattacacgt agctcaaaag aaacgccggc aacggattcg gcactgccta
     1741 aacgggcgga gagaatgaaa ccggcaagtc ctgccaatgc tccgatcacc acataaacac
     1801 tgactaaggt acggttaata ttcacaccgg ctaaacgggc tgcttccgga ttgccaccta
     1861 ccgagtacac atagcgtccc cagcgggttt tatgcaatgc gaagtaaccg ataatggcga
     1921 ctacggcaaa aatcactacc ggcaccggta cgcctaaaat atcgccacgt ccccaccagc
     1981 ggtaaccttc gtcaaatccg gcaattggcg agccgttatt taacacaagt gttaaaccac
     2041 gccaaattgt cataccgcca agcgtgataa taaacggtgg cagtttgagt ttagtgacgc
     2101 ctaagccgtg taaccaacca atgaaagtgc ctaaacctaa acagatactc aaacctatca
     2161 gccagctcat tccgccccaa gcaccggctt ctagcgttac cgtattatcg cctttgataa
     2221 tataggccgc gaacattgcg gtaacagcaa ggattgagcc gacagagaga tcgatccctg
     2281 cagttaagat gacgaaagtc attcctaccg ccataatgcc gaaaatcgac acttcggtta
     2341 aaacgttata gatgttgcgt tgcgataaaa atgccccgtt ttgtgaagtg aagaaaataa
     2401 tcagtaagat caagaaaatc agtacgccga aacgttcaaa gaaggcgata aaatcgattt
     2461 ttcctttgtc atcgaccata cccatatttt ttagaaattg cgttgtcata caaacctctc
     2521 ttatgctgcc gctttacgct gaacgccaac agccatcatt gacattaatt tttcttcggt
     2581 ggcatcatcg ccgtgaattt cgccagttac ccgaccttcg gaaagagtga taatgcggtc
     2641 ggaaatcgcc ataatttccg gtaaatcgga ggaaatcact aataccgcaa caccttgttt
     2701 tgccatatca aacagcactt ggtgaacctc agattttgcc ccaacatcaa tacctcgtgt
     2761 cggctcatca acaattagta ctttcgggtt gagtgccata caacgggcta aaatcacttt
     2821 ttgctgatta ccacccgata atttgcgggc ttcaagttcg ctacttgcca ttttgatgcg
     2881 taacgcttgg cggtaggttt cgattaaatc atcttctttt tgattatcga caaacaagtt
     2941 acccttcaat aatttgctta aaatcggcag ggtcatattg gttttaatcg gtaaaccgag
     3001 aactaagccc tcttttttgc gatcttccgg cacaagggca accccttttt ccaaagcatc
     3061 taacggcgag gtggcagcat aaggcttacc gtctaggctg atttcatcag ccgtataatt
     3121 ttctacccca aacaagcaac gggcaatttc agttcgccct gcgccaacta agccggcgat
     3181 ccctaatact tcaccctcgt gaatgttaaa agagacaccg tggagagcaa tgccgtgtgg
     3241 atcgaatgcc ggtttttccc gatgcagatt tttcacagct aaacgtattg gtcggtgggt
     3301 atggtgagtc tcttctggtg gacggcgagt aaaggcaact tcacgtccta ccatcatttt
     3361 aataatttga tcgacattca catttttgac ttcaccctca ccagaatagc gcccgtcttg
     3421 gaaaacggtg aaacggtcgc atagggcaaa cacttcgttt aagcggtggg tcacataaat
     3481 cacgctaatg ccacggcttt ttaaatcacg cacgatttgg tgtagtgttt ccacttcttt
     3541 atcacttaag gcagcggacg gttcgtccat aataatcaac ttagcgttta aggtcattgc
     3601 acgggcaatc tcgaccatct gctgttgtgc cacacttaaa cgggaaactt gggtgtcagg
     3661 tttgatattt aagccgagat tatccagcac taattgtgct tcctcattca ccgctttttc
     3721 attgacgaat aaacctttca ccggctctct gcccaaaaag aaattttcag caaccgtcat
     3781 attcggtaac aagttaaatt cttgataaat cgttacgatg cctttgagtt ggcgatcaaa
     3841 cggggaatcg ctcaaactta aggtttcacc gttaaagata atttcgccac ttgtttgtgg
     3901 ctgagcgcct gaaagtgctt ttaataaggt cgattttcct gcaccgtttt cacccaacaa
     3961 tgcgtgaact tcgccttttc ccacagtcag tttcacgcca ttgagtgcca taacaccaga
     4021 gaaacttttt gtcagatctt tcacttcaag taagggagta gacatacaac ctccgtaaaa
     4081 aaacgccctc cggcctcagc cggaaggcag ataaattatt cgctgatttc tgcaaaacgt
     4141 tctgcttctt gcagattatc tttcaggata atttttggcg gatagtccgc accgctcact
     4201 tctttgctct cacggatatt gccaaccact tgctctaatg cggtgcttac cgcaaaactt
     4261 gggcgttggt cagcggtgag atacaaccag ccatctttca cacgtgcaag agcctcaggg
     4321 gttgagtcaa agccggttac taaaatatcg ccggctttca aaccttggct acgcaatgct
     4381 tcaatcgcac caagtgccat atcgtcattc gctgaaataa tcacttctgg tttctctttt
     4441 aaggttggta acacactttc aataatgcgt aatccctcag aacggagcca gttaccggtt
     4501 tgatcaacca cgattttata tttgtcacca ccggcagcta attcatcacg aatacctttg
     4561 gtacgttcaa tgttagaggt tgaacccggc tggccggtta aaagaataat ttttgcccca
     4621 ttcgggtatt tggctttcac tgcttttgcg acttcttgac cgcctgtgta gttatttgcc
     4681 ccaaagtgtg gaaccggctt actgctttca acttttcggt ctaatgtcgc agcaggaatt
     4741 ttttctttga taatttcttc cactgcacct gaaatcgcat tcacatcatt cggggaaatg
     4801 ataatgcctt tagcaccacg ggtaattgca ttttctaagt cagaagcctg cttagtagaa
     4861 gaactttgcc cgtctaatac ttgcaatttg atctccaact ttttactggt ttctaccgct
     4921 actttttgta gttgaacttc aaacgggctg gataggttcg gtaagctaaa taccacaagc
     4981 tcatctttcg caaagctgtt cattgctaag cctaacgtta aagcactcaa tacaaattta
     5041 atacgctttt tcattacaaa atcctctttt taagatggga attgacggcg aatattgcca
     5101 atgttacttc aaactgcgaa ggaaacttaa gtcttatttc aataataaac ctcaatgaaa
     5161 taaatttttc aatttagaat atatcattca aaattttcca aaccaaatgc tttgtttcaa
     5221 atttgttacg tagatcacat ttttaggaag agataaatgc aagcggtcaa aacaggtcgc
     5281 ttttttgcaa aaatttgaat aaaaatgacc gcttgtgaga tgaaaaccaa taaaaaagcg
     5341 gtgatttctc accgctaaac actcaaaaaa gaaatgtact cgttattata aggttgggaa
     5401 attaaatgcc gcttggctac gcaccgagct gtccggccaa cgggttgtga tggttttcat
     5461 acgggtgtag aaacgcacgc cgtctgtgcc gtacacattg agaggcccga aaatagaggc
     5521 tttccaaccg ccaaagcagt ggaacgccat tggcacagga attggaatat tcacgcccac
     5581 cataccggct tgtacatctt gggtgaattg acgtgctgaa tcgccatctg cggtgaaaat
     5641 tgcactacca ttgccgtatt ggtgactgtt aatgagtgcg atcccttcgg cataatcttt
     5701 cacacgcaca acagagagaa ccggtccgaa gatttcatct tgccagatgg tcatttcagg
     5761 tgtcacgtta tcaaacagcg tacctccgac aaagtaaccg ttttcaaacc cttcgacttt
     5821 atagcctcga ccatcgacac agagtttcgc cccctgtgcc accccttgat cgatatagct
     5881 ctcaattttg gctttatgct ctttggaaat caccggcccc atatcatttt caagcacgcc
     5941 ttgtggtagt aagcctgaac cgattttcaa tgctttgacc ttaggaatta gctcttcaat
     6001 gattttatcg gctaattcat caccaacaac taccgctacc gatagtgcca tacaacgttc
     6061 accggctgca ccaaatgctg cgcccagtaa ggcattaatt gtgccttgta catcagcatc
     6121 cggcataatc aaagcgtggt ttttcgcacc gcccaaggct tgaacccgtt tgccgtttgc
     6181 tgagcctttc tcataaatat attgtgcaat tgcagttgag ccgacaaaac tcaccgcctg
     6241 aatgcgagag tcggttaaaa gaatatctac cgcttcttta tcaccttgca ccacattgaa
     6301 tacaccgtcc ggcaagccgg cttcttttaa taattctgcc aagcgaatag acacacttgg
     6361 gtctttttca gacggtttta aaacgaaagt gttaccgcaa gcaagtgcca ctgggaacat
     6421 ccacatcggt accattgccg ggaaattgaa cggggtaatg cctgccacta cgcccaacgg
     6481 ttgctggatt gagtgaatat caatgccacg ccctgcattg gcggagaact cacctttttg
     6541 taagtgtgga ataccagtgg caaattccac cacttctaaa ccacgggtta attcgccaat
     6601 cgcatcggaa tagattttgc cgtgttctga gctgattaaa cgagccaact catcaaagtt
     6661 tgcttccaat aactctttga atttaaataa aattctggca cggcgtagtg gtgattgttg
     6721 tgaccagctt ttgaaagcct gatcggccgc tgcaattgcc gcatcgactt cgtttggcag
     6781 gcttaatttg acttttttgg tctcttcacc ggttgcggga ttaaataccg aggtaacacg
     6841 ctggctttgg ctttcaacga ctgcaccgtt aataaaattt tggacaaatt ggctcattgg
     6901 aggctcctta tcaactgatt gagaggaaaa acggataaaa tacagccgat aaactaccgc
     6961 taaaaatgga aaatatcaat acataatact aaaaaatgaa aattttattt catttttgtg
     7021 atctaagtag caagtttaca gattgccggt attaaaatga gacaaaattt cgtatagttt
     7081 gaaagcgtat tccatttcgt taagcgaggt ttcctatgtc tagtccatta ttgtctaaac
     7141 ccaatttcaa ccaacatgaa gggttaattc agcacattac ccctgaaaat gcacagtggg
     7201 aatatgttgg atttgatgtt tatcagctca gtaagcaaca aattacgctg gaaagtggtg
     7261 aaaatgaact ttgtctagtc tttgtgaccg gttttggctc tgtctatgtt gatgattatg
     7321 cttttgaaaa tatcggcaac cgtaccacgc catttgaaaa aattccgcct tatgcggtct
     7381 atatcccgcc acacaaaagc gtgttggtta aaaccgaact caatttagaa ttggcagtgt
     7441 gcaaagcacc aagtcagggt aattatccgg tgcgtttgat tagcccgaac catatcggtg
     7501 tggaaaaacg gggctttggc aacaatcaac gcttggtgca taatattctg ccggaaaccg
     7561 aagcagccga cagtttgctg gtggtggaag tctttaccga tgaaggcaat accagttcct
     7621 acccaagcca caagcacgat gacaaacact ctaccgaaga aacctatttg gaagagacct
     7681 actaccaccg cttcgatcca ccacaaggtt ttgcaatgca acgggtttat accgatgatc
     7741 gcacacttga tgaatgtatg gcggtgtatg ataaaaatgt ggttaaagtg cctcgtggct
     7801 accaccctgt tgctaccatt gccggctata acaactacta cctaaatgtt atggcagggc
     7861 cggtacgcaa atggaaattt acttgggaac aagatcatct ttgggtgaac agtgaaacct
     7921 ataaagccaa atttgagtaa tgcaagcggt ctttttccac caatttttta caaaataagg
     7981 gattaaaaat gggacgcttt tggcgtccca ttcggttata ctttcataca aagatatttt
     8041 atttctaaaa actcttcaat accgtacttc gaaccttccc gcccaagtcc agactctttc
     8101 cagccgccga acggagcgat ttcgttactg atgatcccct cattaatccc gacaatgcca
     8161 tattccaact gctccgatac tcgccaaatt cgcccgatat tttggctgaa taagtaagcc
     8221 gccaaaccaa actcagtatc attcgcccac tggataacct cttcttcggt ttcaaatttg
     8281 aaaatcgggg caaggggagc aaaggtttcc tcacgagcca ctttcatcgc ttgagtgaca
     8341 tttttcagaa tggttggctg gaagaatgtg ccacccagtg cgtggcgttc accgcctaac
     8401 accagttctg ccccaagtga aagggcatcg ttaatgtggc tttcgacttt ttccaccgct
     8461 cgttcactaa ttagtgcacc tatcgtgacc tcttcctcaa atggcgagcc aagcttgatt
     8521 tgagccactt tctcactcaa ttttgcaaga aattgctcat aaatgcccgc ttgcacataa
     8581 attcggttag cacagacgca ggtttgccca ccgttacgga atttagaggc aaacacgccc
     8641 tcaaccgctg tatctagatc cgcatcatca aacacaatcg ccggtgcatt accgcctagc
     8701 tccaatgcca atttttttac cgtccctgcc gattgttgca ttaaaatttt gccgacacgg
     8761 gtggagccgg taaaggtgag tttgcgtacg gtcggattag tgctcaactc ccgccctaca
     8821 ccttcgacat cgctactggt aataatgtta aatacccctt tgggaatacc tgcttgatcc
     8881 gctaattggg ctaatgctaa ggcagaaagc ggggtttctg ccgccggttt aatcacaatc
     8941 gcacaacctg ccgctaacgc cggtgccgct ttacgggtaa tcattgcatt tgggaaattc
     9001 cacggtgtaa ttgctgccac cacgccaatg ggttgtttag tcacaaacaa gcggcgaccg
     9061 gctttatctt gtggcaagac atcgccataa atccgcttgc tttcttcggc aaaccactcg
     9121 ataaaactgg ctccataggc aatctcgcct cgactttctg ccaatggttt accctgttct
     9181 agacttaaaa tctgggcgag ttcttcttgg ttttgcataa tcagctcaaa ccatttacgc
     9241 aaaatcacgg aacgctcttt gggcaataat gcctgccatt ttttctgggc aactgcggct
     9301 gcttcaatcg cttgagcggt ttcttccgtg cctaaatcag ccacctcacc gattttctca
     9361 ccattagtcg gattctgtac cgtaaaggtt ttcccatttt ggcttgaaac aaatttaccg
     9421 ttaatatagg cttggaaacg gagtagcaaa aatttgtgat ttggcataat cactccttga
     9481 atggttaaaa agagaacaat attgactatg atccaatttc agtaaagaga aaagagctga
     9541 aaaataactt tttactcaat aataaagcac cttagacaag cgttcttcta aggtgcagcc
     9601 atttattatt gagaattaac ttaaattctc tacatattta ataattaaga tacaatcatt
     9661 ggagcccata cgaatccaaa agcaagccca acagcaaccc caactaaagc tggaagcata
     9721 aacggatgat ctataatata tttgccagca cgagttgaac ccgtagtatc taattccatc
     9781 gctgctaatg aagttgggta ggttggcagg ataaaaatgc ctgtaattgc aatgaaagaa
     9841 gccaaaattg cccagttagg gatccccaag cttactgcta atggaataat aagagcagaa
     9901 gttgaccctt gtgaataaag taatgcacaa gtaaaaaaga gtactacagc taacaacatt
     9961 ggatattcag ttaaaatatt tccaatagag gctttaattt ctattaaatg tgcatcgaca
    10021 aaagtcatac ctaatgtaac aatcccgata attaccgcaa tagaagtcat tcctgagcgg
    10081 aaaattggac tagccacaat cgtatcaggt ttaatttttc ctaccaacat cattaagcac
    10141 gaagaggcta acatcatcac aataattata tctcgggtac tcattgactt cccattttca
    10201 tatactggct ttaaccctgg aacggctgca agtagaacaa ccaatacagt tgctagtaag
    10261 aaaatgccaa tcgatagttt tgctcctttt gaataggtag attcactcgc taacttacga
    10321 gatgggctga cgattcctgc ttttaaacgt tctaaataaa caacatcatt ttgcaattca
    10381 cagccctgct tagaagcaac aaatgcagca accatagagg caataaaaga aacaggtaag
    10441 catactgcta ttacttgaaa aaatgtaaca ctgttgtttt ccattactgc tatcatagcc
    10501 gccattgcag cactcaatgg agaacctgca atagctaatt gagaagacac aaccgagccg
    10561 gctaatgctc ttgaagggcg aataccactc tcttttgcca cttctgcaat cacaggtaag
    10621 gtggaaaaga cgataaaacc tgtaccagcc ataatcgtca ttaaccaagt aatcatcggt
    10681 gcaataaagt taatatattt aggattttta cgcatcaata cttccgcata acgaacaagt
    10741 aaatccatac ctcctactgc ttgtaacaca gcagcaccta ttacaacagt cataataatc
    10801 agcattacat caactggaat agaacccata ggtaaaccaa aacctagagt tagaatcgca
    10861 agccctaaac caccatatag tcctattcct aagcccccag aacgcagtcc taaatagatt
    10921 gcagcaagta ccacaaagat ttctgcataa atcatatcca tctccttaaa ttaatgagtt
    10981 tgataccaat caattgcttt tttaaccaat accaacgttg aatctacata acgcattggc
    11041 tcacgctcta tttcttgagc taaaataata ggtacttctg tacaacctaa aataattact
    11101 tctgcaccta aacgaatgag ttcatcacgt tgttgtaaca ttagctctgt ggctttctct
    11161 aactcacctg attttaataa atagatacta tccattactg ccttttgacc attttctgtc
    11221 gggcaaataa aagtcagtcc ttgtgcttca agctgttttt tgtataggtc taccgccaaa
    11281 gttgcatcag ttgccaacaa tccaacccgc cattttccac acttcaaaac ctcatcaacc
    11341 acacaatcaa tcatacttag catctctacc tgacttttgg ccttcaagtg ttcaaaccaa
    11401 taatgtgcag tattacatgc aataatgatg caggttgccc ctgcactctc aagcccttca
    11461 atatattttt ccattaccgg agccggattc tctccatttg ctaaaatata gcgagttcta
    11521 tctggtatgt cgggaataga ggaaatcaat aatggaatat gagcttgatc acaatcagct
    11581 ggtgttaagc ggataaattt ttggaacata tctgctgttg ctgcaggtcc cattccacct
    11641 aaaatgccaa taatatttct tgccatacac ttctccttat aagatttaat ttactgcgat
    11701 gacttataca aacaagttat gcaaaaaaga aatgcaataa atcgaatcag tatgcaaaaa
    11761 atgcaacaaa gctctttata gatagaaaaa aaatctttaa aatcaataaa atactaatat
    11821 atcaaatata aatttaatgc atttaatgaa atcataatgc gaaatttgca ttggttagga
    11881 tatgaaaaac atagaaacaa aatggttaga agatttctta acgctagaag aatgtcgcca
    11941 tttttctcag gcagcagaaa aaagaaattt gtcacaatct gcatttagca gacgtatttt
    12001 agctttagaa gaagttgtgg gagtgaagtt atttgatcgt acctctattc cattacaact
    12061 cacagaacaa ggtaagctat ttcattcaca aacgcgaaac ttattacaac aattacagaa
    12121 taatctagat gaattattag gacataattg taacttacct aatattaaat ttgcggcgg
//
LOCUS       DANLVT010000070        12040 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.070, whole genome shotgun sequence.
ACCESSION   DANLVT010000070 DANLVT010000000
VERSION     DANLVT010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12040)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12040)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12040
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.070"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            84..2471
                     /locus_tag="PXC99_001642"
     CDS             84..2471
                     /locus_tag="PXC99_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exo-alpha-sialidase"
                     /protein_id="HDL5418086.1"
                     /translation="MEKMMRKINQLIISPYFFLSILSASANSDFWKSDLNFNLTNITK
                     RVGVDNFTTPVAGEPWAGIGPNGEAAGTAPLYYSRIPAMQVTEDNKLVVMFDLRWNRA
                     YDQDRIDPGIAISSDGGHTWTKKTAWSFDRTNHPARRSMDPTLLHNPIDNSLYVMHGT
                     WSMSDQQWYGGRVPHFNSGSWAATIYKSTDGGLNWEKNTEFSKFSNLDVFSKVTKNGK
                     PTLGFLGGVGSGIVMQDGTLVFPIQTAHQNGIATTIMYSKDNGKTWEMPEIDNPVAPN
                     QSSLENMVFELEPGKLVMTGRGNSRWAYSSTDMGKTWELFTPTNGLLPTSSQPTQGSS
                     IYVTLPNGRKVLLISKPDGKNDGWKRGDITLWMLDAKDPSHKHKVHIIRPGSGNAAGA
                     GYSSLAYKEGNLFVAFENDGDISVKNLTEHIAEMEAKAIEWGLPDELTPALDKINALP
                     YLNKAQKETLVEKMRRANDTAIAQSFVINKEMYNLKNNSDELDKLAKNITKALPSQQN
                     IYQRALAYVNKVTNTADTTYLNYNGIMDTYANLYESYLALNTKLDFTRYIQKARKFNE
                     YNTDILYRSFDNFFAHYDTGVKHNNLSLGLNTKLSENLRGGLFFEYSNKNRNSVQIGA
                     RAKYEMDNHQLSGFLRYRGVKHKDMLARNNSVDGYLNYAYRIQLDDKLSISPSVGAYV
                     SRSSRSLIDEDLAINSRTVYASDVGLNIHYKLNDIDAYIRPSIGFVNGDITLSQSNDM
                     TNTYKIKDKSNVYSVTTGLKKRFANGVALGADFKLHRYGSQTTESNFGLNVSYNW"
     gene            complement(2638..3174)
                     /gene="hpt"
                     /locus_tag="PXC99_001643"
     CDS             complement(2638..3174)
                     /gene="hpt"
                     /locus_tag="PXC99_001643"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HDL5418087.1"
                     /translation="MEKHHIETLHSKEEVLNRINELAKEINQHYHQKQCQNLVVVGLL
                     RGSFMFMADLVRKLELPVEVDFLTASSYGSSTESSRDVKILKDLDGEIQGKDVLIVED
                     IIDTGFTLSKVGEILKLREPNSLAICTLLDKPCRREVDVPVKWVGFEIPDEFVVGYGI
                     DYAQKYRHLDYIAKVVIE"
     gene            complement(3213..4562)
                     /gene="pmbA"
                     /locus_tag="PXC99_001644"
     CDS             complement(3213..4562)
                     /gene="pmbA"
                     /locus_tag="PXC99_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease PmbA"
                     /protein_id="HDL5418088.1"
                     /translation="MSITDKQTLLQQEQELRQAVEFALNFAKQAGAEAEVGVTKVAGL
                     SVSSRLEQVENIEFNNDGSLGISVYLGKRKGNASTSDLQPESIQKTVEAALAIAKYTS
                     EDACTGLADKELLAFEAEDLELYHQADISVDQAVELAIEAEHYALNADEKIVNSDGAT
                     FNSHSGVRVYGNTHGMLQSYLSSRYSLSCSVISAYEDQLERDYEYTIFREFDKLQAPK
                     WVGEQAAIKAVDRLNPQRIKTGEMSVIFYNDVATGLVGHLAGAISGGALYRKSSFLLD
                     KLGEQILPEWFAISERPHLLRQLASSAFDSEGVITQNREIITDGVLQTYLMTSYSGRK
                     MGLKSTGHAGGIHNWLVKPNRQGGLNTLLKEMGTGLLVTEMLGSAINSVTGEYSRGAA
                     GFWVENGEIQYPVAEITIAGQLQDMYKNLVAVGDDIEHRSNIQTGSILLEKMMVSGE"
     gene            4661..5191
                     /locus_tag="PXC99_001645"
     CDS             4661..5191
                     /locus_tag="PXC99_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein"
                     /protein_id="HDL5418089.1"
                     /translation="MAKKRSKNEIDWTDEEEEIIWVSKSEIKRDSEHLKKIGAELIEL
                     TPQNLEKIPLDDDLKEAIRQAQGFKMEARRRQIQFIGKLLRNRDQEPIQEALDKVKNR
                     HNQQQALLHKLELVRNQLIAMGDASLDNLLTEYPQLDRQHLRNLIRGAIKEREANKPA
                     KNYREIYQYLKTEIVE"
     gene            5197..5568
                     /locus_tag="PXC99_001646"
     CDS             5197..5568
                     /locus_tag="PXC99_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB2 family protein"
                     /protein_id="HDL5418090.1"
                     /translation="MEYLSTILKAHIGLAYISLILLLTRGFLSSKMVDWRQYKILRIA
                     PHAVDTFLLITGIAAVAIFLAYDFFTLAQFSWLLPKLLFLVLYIVFATKAFKKGQPFS
                     LKFYLLAVVSFLLMMLTATFH"
     gene            5581..6294
                     /locus_tag="PXC99_001647"
     CDS             5581..6294
                     /locus_tag="PXC99_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
                     /protein_id="HDL5418091.1"
                     /translation="MIGPFVNAGAIILGGVLGACLGSHLPERIRTTLPLVFGLCCFGL
                     GMMLTASVKYMSAVALALILGTIIGELIYLENRIGKVAGLARGLIDRLFPPVHSLSQE
                     EFLEKFIALLVLFCVSGTGIFGAIKEGMTGDPSILYIKSILDFFTAMIFAASLGYAIA
                     AIAVPLIIVQGILILLATVIMPLTTANMMADFSATGGLLLFATGFRICGIKNFPVANM
                     LPALLLAMPMSYFWEWLVH"
     gene            6297..6860
                     /locus_tag="PXC99_001648"
     CDS             6297..6860
                     /locus_tag="PXC99_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HDL5418092.1"
                     /translation="MKKRIIVGISGASGFQYGYKVLELLKPFSEIETHLVISKGAELT
                     RTLETDYTREALHDLADQIHSLNNVGASIASGSFKTEGMVIAPCSMRTLAAIANGLSD
                     NLLTRAADVVLKERRKLVLMVREAPLNLAHIDNMRKVTEMGGIIFPPIPAFYQKPTSL
                     DEMVTHSVSHALSLLDIDIPNTPHWGE"
     gene            6923..7363
                     /locus_tag="PXC99_001649"
     CDS             6923..7363
                     /locus_tag="PXC99_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HDL5418093.1"
                     /translation="MHNPIPTHILDFIQTNHVVNIAAHTEQDFWAANCFYAFDQENVR
                     LIILTAKKTRHAGLMLENPHIVGTICGQIEKINEIEGVQFSATAECLEDKQAEKAALQ
                     IYYQKHPLARLKPSDVWVLSFNTIKHTGNKLMFAKKTIWERNII"
     gene            complement(7367..8242)
                     /locus_tag="PXC99_001650"
     CDS             complement(7367..8242)
                     /locus_tag="PXC99_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5418094.1"
                     /translation="MMKTILIDEANQIKGFSHLYRLRSDLMLKYTEISVTETVEQEPA
                     EFEAGLRLVILLSGRSEIDFNSEVFELDASLKPQAAFLPLNRAEMGRKIFRKGQLQKE
                     LVIFLYPKWLIESQLNLASYHHFKQHLKAHQIILTQSMLKLIHDIVSEQEMQPFGLLE
                     KEGNLLALLASAFSQLTQAPRLKKDRVQQLTELLESGKFDGWSLKQIAIYFHTNVTTL
                     QNEFQHYHKTSIFAYLRRSKLEQAYKLLLQGQSITQAAEFAGYANSENFSTAFKRTFG
                     ITPSQIKRDKAKGII"
     gene            8348..10423
                     /locus_tag="PXC99_001651"
                     /pseudo
     CDS             8348..10423
                     /locus_tag="PXC99_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249230.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
     gene            10467..11903
                     /locus_tag="PXC99_001652"
     CDS             10467..11903
                     /locus_tag="PXC99_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3327 domain-containing protein"
                     /protein_id="HDL5418095.1"
                     /translation="MKKTTACILTFLVSSVLYANNITIELKQNDFVQGKLIQKAQQPL
                     SLSIIFPDQSSRLLAQNVFGEQDFMFKSELIGTATFSILANGATVSDQDFTLTIERHI
                     PISAQIAPPKVIENTQLEELSQKIAKNPEKQTALINDFWDKAKQAGTPLIEPLDEQQS
                     RVTFLWRGATKNARIWGGVSTEHDFMQRFGETDIWYKSYIVPNDTLVEYKLAPDVPTL
                     PVDENTQRRALLATAQADPLNKTAYFEKIGQNIHNTDKFNYASLLKLPNAPTQSFLTE
                     APNIAKGKLQQLIFESATLGNKHRLFVYLPDGFSAEKNYAVLYLFDGVEYTERVPTKT
                     ILDNMIAQKVILPTVAVFIENPSSESRRVELPANPIFTQVLAKELVPFVEKQLNIKTK
                     ERIIGGSSYGGLSSAYTVLNYPNVFSKALILSGSFWWQPKGTPSEQSHYIAQQFIQKE
                     KLPLCFFISAGFYESGKSAICKRSNYFA"
BASE COUNT         3738 a         2401 c         2257 g         3644 t
ORIGIN      
        1 ttgctatctg gtattttata cataagattg aaccatataa tagctgttca gctaaaaatt
       61 agtctttgca ctttatcccc ctaatggaga aaatgatgag aaaaatcaat cagttaatca
      121 tatccccata ctttttccta agtattttat ctgcttccgc taactctgat ttttggaaaa
      181 gcgaccttaa ttttaatctc acaaatatta ccaagcgtgt cggagtcgat aactttacca
      241 ctccagtagc tggcgagcct tgggctggta ttggtccaaa tggtgaagct gcaggtactg
      301 cgccattata ttatagccgt attccagcta tgcaagttac cgaagataac aaattagttg
      361 ttatgtttga tttacgctgg aatcgtgcgt atgaccaaga tcgtattgat cctggtattg
      421 cgatttcttc cgatggtggc catacttgga cgaagaaaac cgcttggtct tttgatagaa
      481 ctaatcaccc agcacgccgt tcaatggatc caacgctatt acataatcct attgataata
      541 gtttatatgt aatgcacgga acttggtcta tgtcggatca acaatggtat ggtgggcgtg
      601 ttcctcactt taatagtggc agctgggcag ctaccattta taaatctact gatggtggtt
      661 taaattggga gaaaaatact gagtttagta aattcagcaa tttagacgta ttttctaaag
      721 tcaccaaaaa tggaaaacct accttaggct ttttaggcgg ggtcggatct ggaattgtaa
      781 tgcaagatgg tacgttggtt ttcccaattc aaaccgcaca tcaaaatggt attgcgacca
      841 ctattatgta ttctaaggat aatgggaaaa cttgggaaat gccagaaatt gacaacccag
      901 ttgcaccgaa ccaaagttct ttagaaaata tggtgtttga actcgaaccg ggtaagctag
      961 tgatgactgg acgaggaaac agtcgctggg catactcttc tactgatatg ggtaagacct
     1021 gggaattatt tactccaact aatggattat taccaactag ctcacaacca actcaaggct
     1081 cttctatcta tgtaacacta ccaaatggtc gaaaagtgct actaatctct aaaccagatg
     1141 gaaagaatga tgggtggaaa aggggtgata ttacactttg gatgctagat gcaaaagatc
     1201 catcgcacaa acacaaggtg catattattc gtccaggttc aggtaatgcc gctggtgctg
     1261 gttattcctc tttagcctat aaagaaggga atttatttgt tgcttttgaa aacgatggtg
     1321 atatttcagt aaaaaattta actgaacata ttgctgaaat ggaagcaaaa gctatcgaat
     1381 ggggattacc agatgaactt actcctgctt tggataaaat caatgcactg ccttatctca
     1441 ataaagctca aaaagagacg ctagtcgaaa aaatgcgtcg tgctaatgat actgcgattg
     1501 cacaatcttt tgtgattaac aaagaaatgt ataatctgaa aaacaatagt gatgagctgg
     1561 ataaattggc aaaaaatatt actaaagcac tgccgtctca acagaatatt tatcaaagag
     1621 ccttagccta tgtgaataaa gtcaccaata cagcggatac cacttattta aattataatg
     1681 gtattatgga tacctatgct aatttatatg aaagctattt ggctttaaat actaaattag
     1741 acttcactcg ctacatccaa aaagcgagaa agttcaatga atataacact gatattttat
     1801 atcgtagctt tgataatttc tttgcccatt acgacacagg tgtaaaacac aataatctat
     1861 ccttaggctt gaatacaaaa ttaagtgaga atttacgtgg tggcttattc tttgaataca
     1921 gtaataaaaa tcgtaatagc gtacaaattg gtgcaagagc taaatatgaa atggataatc
     1981 accaactttc tggcttctta cgctatcgtg gcgtaaaaca taaagatatg ctagcacgta
     2041 ataacagtgt tgatggctac ctaaattatg cttatcgtat tcaattagat gataaattaa
     2101 gcattagccc atcagttggt gcttacgttt cacgttcttc tcgctcatta atagatgaag
     2161 atcttgcgat taatagccgc acggtctatg caagtgatgt aggattgaat atccattata
     2221 agctaaatga tattgatgct tatattcgtc caagtatagg ctttgtcaat ggtgatataa
     2281 ctttatctca atctaatgat atgacaaaca catacaaaat aaaggataaa agtaacgtgt
     2341 attctgtcac gacagggttg aaaaaacgct ttgcaaatgg tgtggcatta ggggctgatt
     2401 tcaaattaca tcgttatggt tctcaaacta ctgaaagtaa tttcggtcta aatgtaagtt
     2461 ataactggta ataccgtaaa ctgattacga tttaaaagtt agactagccc aagactgagt
     2521 tctatattcc atagagctca gtcttttaat ttttctttct cgataagaat attttatatt
     2581 tcaaccttaa tcgagaatgt aattagtcgt gaaaatctaa gtagtgattg agttttttta
     2641 ttcaatcact actttagcaa tataatctaa atgacgatat ttttgggcat aatcaatccc
     2701 ataacccacc acaaattcat cggggatctc aaatcccacc cattttacgg gcacatcaac
     2761 ttcgcggcgg caaggtttat ctaataaagt acaaatagca agtgaatttg gctcacgtaa
     2821 cttgagaatc tcccctacct tgcttaaggt gaagccagta tcaataatat cttctacaat
     2881 caatacatct ttaccttgaa tttcgccatc taaatctttt agaattttga catcacggct
     2941 ggattccgtg ctgctgccat agcttgatgc ggttagaaaa tccacttcta caggtaactc
     3001 tagctttctt actaaatctg ccataaacat aaacgagcct cgcaataaac caaccactac
     3061 aaggttttgg cactgttttt ggtgatagtg ttgattgatt tcttttgcta attcattgat
     3121 tcggtttaat acttcttctt ttgaatgtag cgtttcgata tgatgttttt ccattgattt
     3181 ctccaaataa aattgattac aagcggccgt ttttactcgc ctgaaaccat cattttttct
     3241 aataagattg aacctgtttg gatatttgag cggtgttcaa tatcatcgcc taccgccact
     3301 aaatttttat acatatcttg cagttgccct gcaatggtaa tttccgctac agggtattga
     3361 atttcaccgt tttctaccca aaatcctgct gcacctcgag agtattcccc tgttacgcta
     3421 ttaatcgcag aacctagcat ttccgttact aataatcctg ttcccatttc cttaagtaac
     3481 gtatttaaac caccttgacg atttggttta actaaccagt tatgaatacc acctgcgtgt
     3541 cctgtacttt ttaaccccat tttacgccct gaatagctag tcattaaata cgtttgtagc
     3601 acgccatcag taataatttc acggttttgg gtaattacac cttcactatc aaacgcagaa
     3661 gaggctaatt gacgcaacaa atgcggacgc tctgaaatcg caaaccattc aggcagaatc
     3721 tgttcgccta atttatctaa taagaaactt gatttgcggt ataatgcacc gccactaata
     3781 gctccggcca aatgccccac taaaccggtt gccacatcgt tatagaaaat cacagacatt
     3841 tcgccggtct taattcgttg cggattcaat ctatctaccg ctttaattgc agcttgctcc
     3901 cctacccatt tcggtgcttg taatttatca aactcacgga aaatggtgta ttcataatca
     3961 cgctcaagct gatcttcata agctgaaatc acgctacaag agagtgaata tcggctcgac
     4021 aggtaactct gcaacattcc gtgcgtattg ccataaacac gcacgccact gtgagaattg
     4081 aaagttgccc cgtcactatt cacaattttt tcgtctgcat ttaaggcata atgctccgct
     4141 tcaatcgcca attcgactgc ttgatcaact gaaatatccg cttggtggta caattccaaa
     4201 tcttctgcct caaaggcaag caattcttta tcagcaagcc cggtacaagc atcttctgag
     4261 gtatattttg caatcgcaag agctgcttca accgtttttt gaatcgactc tggctgaaga
     4321 tcggaggtgg aagcattacc tttgcgtttg cctaaataaa ccgaaatacc gagagaacca
     4381 tcgttattga actcgatgtt ttcaacttgc tctaaacggc ttgaaaccga aagcccggca
     4441 actttagtca cgcctacttc cgcctctgcc ccagcctgtt ttgcaaaatt taaggcaaat
     4501 tcgaccgctt gtcgtagctc ctgttcttgt tgtaacaagg tttgtttatc tgtaattgac
     4561 attttgttcc attgattgat tgcattgatg aatatattct aactcaaatt tctgttagaa
     4621 tacggcattt tttagagttt atgtaatgaa aggataaaga atggctaaaa aacggagcaa
     4681 aaacgaaatt gactggacag atgaggaaga agaaatcatc tgggtcagca aaagtgagat
     4741 aaaacgagat tctgaacact taaaaaaaat tggggctgaa ttgatcgaat tgaccccaca
     4801 aaatttggaa aaaattccac tagacgatga tttaaaagag gcaattcgcc aagctcaagg
     4861 ctttaaaatg gaggctcgcc gccgtcaaat tcaatttatc ggcaaattat tacgcaaccg
     4921 tgaccaggag ccgattcaag aagccttaga taaagtgaaa aatcgccata atcagcaaca
     4981 agccctatta cataaattgg aattagtgcg taatcaactg attgcaatgg gcgatgcatc
     5041 attagataat ttattgacgg aatatcctca attagaccgc caacatttgc gtaatttaat
     5101 tcgtggggca attaaagagc gtgaagccaa taaaccggca aaaaattacc gtgaaattta
     5161 tcaatattta aaaactgaaa tcgtggagtg attattatgg agtacctatc aaccattctt
     5221 aaagctcata tcggcttagc ttatattagt ttaattttat tattaacccg tggattttta
     5281 tcgtcaaaga tggtggattg gcgacaatat aaaattttgc gcattgcccc acacgcagtt
     5341 gataccttct tacttatcac cggtattgct gctgtcgcta ttttcttagc ttatgatttt
     5401 ttcaccttag cacaattcag ttggttgcta ccaaagttac tcttcttagt actttatatt
     5461 gtatttgcga caaaagcgtt caaaaaagga caaccgtttt cgctcaaatt ttatctgtta
     5521 gccgtagtct cattcttatt aatgatgcta actgccactt ttcactaaat aagggaaact
     5581 atgatcgggc cttttgtgaa tgccggtgca attattttag ggggcgtgct gggtgcttgt
     5641 ttagggagtc acctgcctga acgtattcgc actacgttgc cgctggtatt cggcttatgc
     5701 tgtttcggct taggtatgat gctgactgcc tcagtaaaat atatgtctgc ggttgcctta
     5761 gcattgattt taggcacgat catcggtgaa ctgatttatt tagaaaacag aatcggtaaa
     5821 gttgccggtt tagctcgtgg tttaattgac cgcctattcc caccggtgca tagtctttcc
     5881 caagaagagt ttttagagaa atttattgct ctgcttgtac tgttttgtgt gagcggtacc
     5941 ggcatttttg gtgcaataaa ggaaggaatg acaggcgatc caagtattct ttacattaaa
     6001 tcgattctag atttcttcac cgcaatgatt ttcgctgctt cgttaggcta tgccattgcg
     6061 gcgattgcag tgccgttgat tattgtgcaa gggattttaa ttctactggc aaccgtgatt
     6121 atgcctttaa ccactgccaa tatgatggca gatttctccg caaccggcgg tttactgcta
     6181 tttgcaaccg gctttcgcat ttgtggaatt aaaaactttc cggtcgcaaa tatgctacca
     6241 gcactactcc ttgcgatgcc gatgtcttat ttctgggaat ggttggtaca ttaatgatga
     6301 aaaaacgtat tattgtcggc attagtgggg caagtggttt tcaatatggc tataaagtgc
     6361 ttgaactgct gaaaccgttt tcagaaattg aaacccacct tgtaatcagc aaaggagctg
     6421 aactcactcg tactctcgaa acggattata cccgagaagc tcttcatgat ttagctgatc
     6481 aaatacattc gctaaacaat gtcggagcaa gcattgccag tggttcattt aaaaccgaag
     6541 gtatggtcat cgccccgtgt tctatgcgaa cccttgccgc tattgccaac ggtttgagcg
     6601 ataatttgct gacccgtgcg gcagatgtgg tgttgaaaga acggcgtaaa ttggtattaa
     6661 tggtgagaga agctccgctc aaccttgctc atattgacaa tatgcgaaaa gtcacagaaa
     6721 tgggcggcat tattttccca cccattccgg cgttttacca aaagccaacc agccttgacg
     6781 agatggtcac ccacagcgta agccatgccc tttccctgtt ggatattgac attccaaata
     6841 ccccacattg gggagaataa ttcggcttat cttttgcttt ttgaaatgct agaatacctg
     6901 ataaaaacta tcaggtattt ttatgcacaa tccaatcccg acccatattt tagatttcat
     6961 tcaaactaac cacgttgtca atattgcagc tcataccgaa caggattttt gggcagcaaa
     7021 ttgcttttat gcctttgacc aagaaaatgt tcgcttgatt atcttaaccg ccaagaaaac
     7081 cagacacgct ggcttgatgc ttgaaaaccc acatattgtc ggcacaattt gtgggcaaat
     7141 tgagaagatc aacgaaattg aaggtgtcca attctccgct accgccgaat gtttagaaga
     7201 taaacaagcc gaaaaagccg ctttgcaaat ttattaccaa aaacacccgc ttgcacggct
     7261 taagcctagc gatgtttggg tgttatcatt caataccatc aagcacaccg gtaataaact
     7321 tatgtttgcg aaaaagacga tttgggagag aaatataatt tgaagctcaa ataatgcctt
     7381 tagccttatc ccgtttgatt tggcttggtg ttatcccaaa agttcgctta aatgccgttg
     7441 aaaaattctc cgaattggca tatccggcaa attcagctgc ttgtgtaata ctctgccctt
     7501 gtaatagtaa tttataggct tgttctaatt tagaacgcct taaatacgca aaaatagagg
     7561 ttttgtggta atgctgaaat tcattttgta atgtggtcac attggtatgg aaatatattg
     7621 caatctgctt caaactccag ccgtcaaatt taccgctctc aagcaattct gttaactgtt
     7681 gcacccgatc tttttttaac cggggagcct gtgtcagctg agaaaaagca cttgctaata
     7741 aagctaatag attaccttct ttctcaagta acccaaatgg ttgcatttcc tgctctgaca
     7801 caatatcgtg aataagtttt aacatactct gagtcaaaat aatttggtgg gcttttaaat
     7861 gctgtttaaa gtgatgatag cttgccaaat ttaactggct ttctattagc catttagggt
     7921 agagaaagat aacaagctct ttttgaagtt gccctttcct aaaaatttta cgccccattt
     7981 cagctctatt tagcggtaaa aatgcggctt gaggttttaa acttgcatct aattcaaata
     8041 cttccgaatt aaaatcaatt tccgatcgac cactcaacaa tataaccaat cttagtccgg
     8101 cttcaaattc cgcaggttct tgctctacgg tttcagtaac tgaaatctct gtatatttca
     8161 gcataagatc tgaacgtagt cggtataaat gtgaaaaacc ttttatttgg ttagcttcat
     8221 caatcaagat tgttttcatc attaaaaact ttttttcgca tagtcaaaat tttattttac
     8281 aaaggttttt tgcataaaaa caagatatta ttatattcaa taatcattct tatttaagga
     8341 taaactaatg aaaataaaaa aatattcact ttctctaatc actttagcga ttgtagctcc
     8401 tcaagtatta gcagaaacaa cctctcaagc agaactaaat gctattgagg tcaaagagaa
     8461 attggcagct accaccggct atattcctgt ttatacgact gtaggaacga aaacattaac
     8521 ctctttggct cgtacacctt ttagtatcaa tgttgtctct gatgatttaa tgcatgacca
     8581 agctgttcgt tctgttaccg attcagtggc ttatacctcc ggtatgatgg gtggctatcg
     8641 tggtaacaat tcgcttatcg aaatctccat tcgaggcatt ggcaataaaa gtgatggcag
     8701 tacaattccg acctatttaa acggttctcg ctaccaaact gcatttgaaa tcgatccgtt
     8761 cttcttagaa agtatcaatg tgattaaagg tccaaactcc attttatacg ggcaagctaa
     8821 tcccggtggc gtaatggata ttatcaccaa aaaagccggc agtaacccac atcgccattt
     8881 gcaatttgtg gtgggaaacc atcaacgata ccaaatcggg ctggatattg aagaaaatct
     8941 ctccaatacc ttatccgctc gtttaatcgg tcaattagaa cgaacaaact ggaataccta
     9001 atttgtaaaa gaaaaaggcg gtgcttttgc tccaagcatt ttatggaaac cgactacaaa
     9061 tacagaactt aatgtttacg cttactatgc aaaaaaaccg aaagccggtg atcgtaactt
     9121 tttaccgaaa gaaggaacga ttaatagcgt aaacgggaag gaactaccct atgatatgtt
     9181 cctcagcgat ctgaactatc acggtttaaa agccgaacaa atgcaagtag gttacagttt
     9241 ctcacataaa tttacgccaa acctaacgtt ccgccaaaat gcaagttacc ataatggcga
     9301 agagaatttc aaaaatctag tttattgggg cgatgtcggt tcggttttag aacgtagagc
     9361 tcgccattgg gatgtcaaaa cccaagaaat caacttagat aaccaattag aatgggtatt
     9421 tagcacagca aatataaatc ataccttgtt agccggtatt gattataaac gagtgcgtaa
     9481 agatcttgat aactatatgg ggattgcccc tgattttgat tggcagaacc ctgtttatgg
     9541 cgtgaccgtt actgagccta gcttattttc aagtgaagtg aagcatttaa aacaacttgg
     9601 ggtttatcta caagatcaaa tagaaatcgg taattttgac ttcctgttag gcggtcgtta
     9661 cgatcgagca aaaaacagca accaagatcg tttgaacagt aaaacagaga ataaccaaga
     9721 aggaaaattt acttggcgta caggcgtagt ttacaacttt gaaaacggta tcgctccgta
     9781 tatcagctac agcacttctt ttgtgccatc ggctgaaaaa gatgctcaag gaaatttctt
     9841 aaaaccaaca actgctgggc aatgggaagt gggaatgaaa taccaaccta cccaagacac
     9901 cttactgacc ttagcaggat ttaaaattac acaaaaagat ttagccaatt atcaatggca
     9961 aacccgctct tatgagcaaa ttggtgaagt gcaaaccaaa ggaattgaag tgagtttaaa
    10021 tcagcaatta tccgataaat tttcaatagc ggcttcttat gcttacttaa aaaaagagat
    10081 tactgcagat aaagatggca cgacgattgg aaaaacgcag tggggagtgc ctcgccatca
    10141 agcatctctt tgggcaaaat ataaattctt tgataagctg accgccggtg taggtgtacg
    10201 ctatatggga acgacttttg gcgataacca aaatactttt accgtaccgg catacacact
    10261 ttacgatatg atgctagctt atgattttat gcctaactta aacttacagc tcaacgcaca
    10321 aaacctgacg aataaaaaat atgtcgcaag ctgtgccaat aatttttcct gtttctatgg
    10381 aaaagatcgc aatttaagtg caacgttaaa ctatcatttt taatctcaac agccctcaaa
    10441 tgagggctta aacttttgca aaaaatatga aaaaaacgac cgcttgtatt cttacttttt
    10501 tggtttcatc tgtgctttat gctaacaata taaccattga gcttaaacag aatgattttg
    10561 tgcaaggcaa attgattcag aaggctcaac agccactttc cttgtcgatt atttttcctg
    10621 accaaagctc tcgcctgctg gctcaaaatg tctttggtga acaagatttt atgtttaaat
    10681 cagaactaat cggcacagct actttttcta ttctagcgaa tggtgcaacc gtttcagacc
    10741 aagattttac cttaacgatt gagcggcata ttccaatctc ggcacaaatt gctccaccta
    10801 aagtaattga aaatacacag cttgaagaac tcagccaaaa aattgcaaaa aatccagaaa
    10861 aacagaccgc tttaattaac gatttttggg ataaagcaaa acaagccggc acaccattga
    10921 ttgaaccatt ggacgaacag caaagccgtg taactttttt atggcgtgga gcaacgaaaa
    10981 atgcccgtat ttggggcggt gtgagtactg aacacgattt tatgcaacgc tttggtgaaa
    11041 cggatatatg gtataaaagt tatatagtgc ccaatgacac tttagtggaa tacaaattag
    11101 ctccagatgt gccgacattg cccgttgatg agaataccca acgcagagcg ttactggcta
    11161 cggctcaagc cgatccactc aataaaacag catacttcga gaaaatcgga caaaatattc
    11221 ataataccga taaattcaac tacgcttcgc tacttaaatt gccaaacgca cctactcaat
    11281 cttttttgac tgaagctcca aatattgcaa aaggtaaact gcagcagttg atttttgaga
    11341 gtgcaacact cggcaataaa cacagattat tcgtctatct gcctgacggt tttagtgcag
    11401 aaaaaaacta tgcggttctc tatttatttg atggtgttga atataccgaa cgagtgccaa
    11461 ctaaaaccat tttagataat atgatcgctc agaaagtgat tctgcctact gtagcggtgt
    11521 ttatcgaaaa tccatcgagt gaatcaagac gtgtcgagct gcctgccaat cccatattta
    11581 cgcaagtatt ggcaaaagaa cttgtacctt ttgttgaaaa acagctcaat ataaaaacaa
    11641 aggagcgaat tattggcggc tctagctatg gcgggctatc ctctgcttac accgtactca
    11701 actatcctaa tgtatttagt aaagcattga ttctatccgg ttcattttgg tggcaaccca
    11761 aaggcacacc tagtgaacaa agccactata ttgctcaaca atttatccaa aaagaaaaat
    11821 taccactctg ttttttcatc agtgcaggtt tttatgaaag cgggaaatcg gctatttgta
    11881 agcggtcgaa ttattttgca tagaattaca ctcaattttg catagataaa aattaaaaac
    11941 tatgcaaaat aattgtagaa gatcaaacct aatctgacag tcccccgttt taaattaccg
    12001 tgtctgtcag attaatttga gcttaaattc ttttccaccc
//
LOCUS       DANLVT010000071        12022 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.071, whole genome shotgun sequence.
ACCESSION   DANLVT010000071 DANLVT010000000
VERSION     DANLVT010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12022)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12022)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12022
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.071"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(58..696)
                     /locus_tag="PXC99_001653"
     CDS             complement(58..696)
                     /locus_tag="PXC99_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HDL5418096.1"
                     /translation="MELKHTIEQRKTIKAFNSTIKISRTELEEMVALSQLAPSKANLQ
                     PWRFVIIDVEILKAALSKNVAFNGPPCETASAIVVILADLQYEKLLGAIVDQSVETGC
                     LHKEFRERKFDFLLNLHNQATQAEIRDQVLIDTSLAAMQLMLIAKDKGYDTHAIGVFE
                     RPAVLKLLNIDAERYLPVMLLAIGKAANPALPSCRLPLEYTVSWNDGQGFKI"
     gene            complement(838..1632)
                     /locus_tag="PXC99_001654"
     CDS             complement(838..1632)
                     /locus_tag="PXC99_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5418097.1"
                     /translation="MALLEVNHLNKRFVERSSLFHKQDFYAVKEVSFTLNRKETLAII
                     GENGAGKSTLAKMVAGMVGPTSGELIFRGTPLSFGDYKYRAKHIRMMFQDPNDAFDPN
                     YNIGQILDAPLRLATDLNEEERNERIFNTLKLVGMYPEQALVPISEASSGQKQRIAFA
                     RALILEPEIIIADDTINSLDFSVKTQLINLMLSVQQRQGIAYIYVGQNLGLIKHIADK
                     IMVMQSGEVVEYGLTKEVLLNPQHQITKRLIESHFGKHLSSYAWAS"
     gene            complement(1733..2809)
                     /gene="fbaA"
                     /locus_tag="PXC99_001655"
     CDS             complement(1733..2809)
                     /gene="fbaA"
                     /locus_tag="PXC99_001655"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HDL5418098.1"
                     /translation="MSLLNIVKPGVVTGDDVQKVFAYAKEHNFAIPAVNCVGSDSVNA
                     VLETAARVKSPVIVQFSNGGAQFYAGKGIKPASGARADVLGAIAGAKHVHQLAEEYGV
                     PVILHTDHAAKNLLPWIDGLLEAGEKHFAETGRPLFSSHMIDLSEEPIEENMEICREY
                     LARMDKIGMTLEIEIGVTGGEEDGVDNSDVDESKLYTQPSEVLYVYDQLSPISPRFTI
                     AAAFGNVHGVYKPGNVKLKPSILGASQEYVSKERGLPAKSLDFVFHGGSGSSREEIRE
                     AISYGAIKMNIDTDTQWAAWDGILQFYKANEAYLQGQLGNPTGPDAPNKKYYDPRVWL
                     RKMEESMSKRLEQSFEDLNCVNVL"
     gene            complement(2906..4081)
                     /locus_tag="PXC99_001656"
     CDS             complement(2906..4081)
                     /locus_tag="PXC99_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HDL5418099.1"
                     /translation="MSVIKMTDLDLAGKRLFIRADLNVPVKDGKVTSDARIVATIPTL
                     KLALQKGAKVMVTSHLGRPTEGVFEEENSLQPVVDYLNASDLGVPVRLVRDYLDGVEV
                     NENEIVVLENVRINKGEKKNDPELAKKYASLCDVFVMDAFGTAHRAEGSTYGVAEYAP
                     VACAGPLLAAELDALGKALKEPQRPMLAIVGGSKVSTKLTVLDSLSKIADQLIVGGGI
                     ANTFIAAEGHAVGKSLYEEDLIPEAKRLAQVTNIPVPVDVRVGTEFSETAPATEKAVS
                     EVRADESIFDIGEKSSEQLAEIIRNSKTILWNGPVGVFEFPNFRKGTEVISNAIAEAT
                     ANGAFSIAGGGDTLAAIDLFGIKDKISYISTGGGAFLEFVEGKVLPAVEILEKRANG"
     gene            complement(4336..5694)
                     /locus_tag="PXC99_001657"
     CDS             complement(4336..5694)
                     /locus_tag="PXC99_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDL5418100.1"
                     /translation="MANQQQERQSWSNRLAYIMTVAGATVGFGATWRFPYLVGEHGGG
                     AYVFLFCIAMIVIGIPMILVENVIGRRMRVNAIDAFAGFANGKKIASGWKILGYMGLL
                     GAFGILAYYMVLGGWVLNYIGSLLTGTLDLSQPVTVGTTQQFFQQSIFNSPMTIIAYT
                     ALFVLVNYFILVKGIVDGIERSVKYLMPILFIFLIVMVVRNITLPGAAEGIAFYLMPD
                     FSKITPKLFVFVLGQVFFALSLGFGVLITLSSYLDKSENLVKTATITGVMNTLIAVLA
                     GFMIFPSLFSFGVAPNSGPTLVFQSLPIVFSNMWGGTVFAVIFFSLLVVAALTTSLTI
                     YEVIITALQEKAKISRQKAIFITLATIFLLGNIPSALSDNILQDVQVMGKSIFDAFDY
                     ISGNILFILTALGSAIFVGFVLKEEAKEELGAGKMFTTIWFNYVRFVIPVIILVIFFN
                     SL"
     gene            complement(5764..6591)
                     /locus_tag="PXC99_001658"
     CDS             complement(5764..6591)
                     /locus_tag="PXC99_001658"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dam family site-specific
                     DNA-(adenine-N6)-methyltransferase"
                     /protein_id="HDL5418101.1"
                     /translation="MNHPKHRAFLKWAGGKYRLIPDIQTHLPKKACLVEPFVGAGSVF
                     LNTDFERYILADINPDLINLFNVVKADVEEYIAQTKQLFLHPQANTEAFYKARRAEFN
                     RSKDIFRRSVIFLYLNRFGYNGLCRYNQKKGYNVPFGRYKTHYFPEKELRFFAEKAQK
                     ATFVCADFEQVFELAKNQLTDYVIYCDPPYAPLAQETNFTQYAGGGFSLEQQGRLATL
                     ALEMKGLGVPVLISNHDTDFTRRIYQSADITQIQVQRSIGQKVGSRVKVGELFALFI"
     gene            complement(6605..7693)
                     /gene="aroB"
                     /locus_tag="PXC99_001659"
     CDS             complement(6605..7693)
                     /gene="aroB"
                     /locus_tag="PXC99_001659"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HDL5418102.1"
                     /translation="MLQVNVELKERRYPIIIGAGLLNQPASYSPLKSGDKVMIVSNPT
                     VATHYLSVVTNALKELGCHVDSVLIPDGEEYKTLESLNLIFTALLEKNHNRDTTLIAL
                     GGGVIGDVAGYAAASYQRGIRFIQIPTTLLAQVDSSVGGKTAVNHPLGKNMIGAFYQP
                     VSVIVDTNTLHTLSKREVSAGLAEVIKYGAIFDVTFFEWLEKHIDDLVSLKQDELEYC
                     IQRCCQLKADVVARDETEKGDRALLNLGHTFGHAIEARMGYGVWLHGEAVSVGMLEAA
                     ELSRILGDLSPQEVARLEKLLARANLPTISPDGMEPAEYLPYMWRDKKVLAGQLRLIL
                     LKSLGEAYVSSQATESQVLASIERFTQR"
     gene            complement(7717..8238)
                     /gene="aroK"
                     /locus_tag="PXC99_001660"
     CDS             complement(7717..8238)
                     /gene="aroK"
                     /locus_tag="PXC99_001660"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase AroK"
                     /protein_id="HDL5418103.1"
                     /translation="MAEKRNIFLIGPMGAGKSTIGRQLAQTLGMEFMDSDSVIEERAG
                     ADIDWIFDVEGEEGFRKREERILNELTQNYGIVLSTGGGSILSKDNRNVLSARGIVIY
                     LETTVDKQFERTQRDKKRPLLQTEDPRKTLEELAKIRNPLYEEIADITIHTDEQSAKV
                     VANQIIDMIDNLQ"
     gene            complement(8475..11039)
                     /locus_tag="PXC99_001661"
     CDS             complement(8475..11039)
                     /locus_tag="PXC99_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HDL5418104.1"
                     /translation="MRIAKIIFSALLSLLVLGGVIGGLLYMHFKSDLPDVATLKNVEL
                     QQPMQIFTLDGKLIGEVGEERRIPVKLDDIPPMLVKAILATEDARFYEHKGIDPKGIM
                     RAIWRTSQGDTQGASTITQQLAKNFFLTPERSLERKAKEAILALEIEQVLSKNEILEL
                     YLNKIYLGYRSHGVAAAAKTYFNKSLKDLTLSEIAIIAGLPKAPSTMNPLYSVKRAED
                     RRNVVLGRMLETGDITKEEYEKAKAEPVVANYYGATLEFRADYVTEMVRQEIVKRYGE
                     NIAYNKGLKVYATVLSADQKAAQDALRENLIDYDRRHGWRGAEKLWTGSSAWDDEKII
                     DHLSKLPKSEPFTPAVVMQADKSKYTILLANGDISVLKRTNASFAPKGLKAGEQIWVR
                     QNKNREWALGQIPEVNSALVSINSENGAIESIVGGFSFEQSRFNRATQSLVQVGSAIK
                     PFIYTAAMNKGLSLSTTISDSPIVIKKKGQKEWRPKNADGVYGGPLRTRVALGKSKNM
                     VAIRILQMAGIDYVADYLQRFGFNRNQYVATESLALGAASFTPLEMARAYAVFNNGGY
                     LIEPYIIDRIIDAQGYELYQANPVVACNSCDSPVVYPEPKYFESVKIHDEAQVGVQTI
                     ANSSNNDDDDVVEDVGDSEPELQANNSEKNAPSLMAESSHHIKGLRYAPHVISDELAF
                     LMRSALATAITGEPEYGWRGTSYKMLNTIKRADVGGKTGTTNNAKATWYAGFGANIST
                     VVYVGFDDNKRVLGRGASGSSTALPAWTNYMKVALSDKPVEKSTLPKNIIEVNIDPNS
                     GFLGNGRKEYFIKGTEPTKRYIVERAYTEKAPQKTESAPLRLGLPPPGVLKSGELF"
     gene            11163..11861
                     /locus_tag="PXC99_001662"
     CDS             11163..11861
                     /locus_tag="PXC99_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComA"
                     /protein_id="HDL5418105.1"
                     /translation="MKLLKAHSKTPSNRIILGLSEDEQRYCLVKNKAEKFTVFWQAKP
                     ASIEELIGNLTPQEQAMMTLVRPIPYQYIWRKTVFMANTLNEAQLHRKVIHILKNEQP
                     LALDLLNIDYQRFPSSNDNLDKVVIYAVRKSYTENLSQFNSILDCELHCYARAIIHLT
                     QSQNNQPAPCFSFKQKYFQFTETELLILQTEPEDCIHLSDLKIDHLEIECEQEKQLYC
                     LALGASLWNGKVLI"
     gene            11837..>12022
                     /locus_tag="PXC99_001663"
     CDS             11837..>12022
                     /locus_tag="PXC99_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418106.1"
                     /translation="MEWQGIDLSANRKNNWFAGSDKGIKNVIYTLLLSALISLALIFL
                     YLQKNQEIQPLAQQLELV"
BASE COUNT         3715 a         2645 c         2039 g         3623 t
ORIGIN      
        1 acgctcaaat tttaacaatt ttttgccaaa aaattaagat atttaaccgc ttgcacctta
       61 tattttaaaa ccttgtccat cgttccaaga aaccgtatat tctagaggta aacggcaact
      121 tggcaacgct gggtttgctg ctttaccgat agctagtagc ataacaggca aataacgttc
      181 tgcatctata ttcaataatt ttaatacagc agggcgctca aacacgccta tcgcatgagt
      241 atcatagccc ttatctttgg caattagcat taattgcatt gccgccaaac tagtatcaat
      301 taatacctga tctctaattt ctgcttgagt tgcttggtta tgaagattta gtaaaaaatc
      361 aaatttacgt tcacgaaact ctttatgcaa acacccagtt tctaccgatt gatcaacaat
      421 tgcgcctaat aatttttcat attgcaaatc tgccaatatc accacaatag cagacgctgt
      481 ttcacaaggt gggccattaa aggcaacatt ttttgataat gctgctttaa gaatttcaac
      541 atcaataatg acaaaacgcc aaggttgcag atttgctttt gagggagcaa gctgggataa
      601 agcgaccatt tcttctaatt cagttctact aatcttaatt gttgaattaa aagctttgat
      661 agttttacgc tgttcaatcg tatgtttcaa ttccatctct tttctcctat ctctcaaaca
      721 attgagatag tctataattt aaagattagg aatgtaataa ttgaaaagag ttattctgca
      781 tatttattga aataggtcaa aattatcaag taatcatatt agagcaggag taaagattta
      841 gcttgcccaa gcataggaac taaggtgctt tccaaaatga ctttcaatta aacgtttcgt
      901 aatttgatgt tgcggattca gtaaaacctc tttcgtcaag ccatactcta ctacttcgcc
      961 actttgcatc accattattt tatcggcaat atgtttgatc agacctaaat tttgccccac
     1021 ataaatataa gcaatccctt gtcgctgctg gacacttaac attaaattaa ttaattgtgt
     1081 tttgactgaa aaatccagtg aattaatcgt atcatccgca ataataattt ccggttctaa
     1141 aattaaagca cgagcaaacg caatacgctg cttttgccca ctggaagcct ctgaaatagg
     1201 aacgagcgct tgctcaggat acattcctac caattttagc gtattaaaaa tacgctcatt
     1261 tctttcctct tcatttaaat ctgtcgccaa gcggagcgga gcatctaaaa tttgtcctat
     1321 attataatta ggatcaaagg catcgttagg gtcctgaaac atcatacgaa tatgcttagc
     1381 tcggtattta taatcgccaa atgaaagcgg tgttcctcta aaaatcagtt ctccagatgt
     1441 tggcccaacc ataccagcaa ccattttagc caaggtagat ttcccagctc cgttttcacc
     1501 aataatcgct aaagtttcct tgcgatttag ggtaaaagaa acttctttta ccgcataaaa
     1561 atcttgttta tgaaataggc tactacgttc aacaaaacgc ttattcagat gattaacttc
     1621 aagtaatgcc ataataaatt ggtgcttgga aataaagtga tagtttaccg caaaaaataa
     1681 ataaaaaaag accgcttata caagcggcct gatttatgga attttttgca aattataaaa
     1741 cgttcacaca gtttaagtct tcgaaagatt gctctaagcg tttagacata gactcttcca
     1801 ttttacgtaa ccaaacacgt ggatcgtagt attttttgtt tggtgcatca gggcctgtcg
     1861 ggttacctaa ttgaccttgt aaatatgctt cgtttgcttt gtagaattga agaataccgt
     1921 cccacgcagc ccattgggtg tcagtgtcaa tgttcatttt gattgcaccg tagctgattg
     1981 cttcacgaat ctcttcacgt gaagaaccag aaccgccgtg gaaaacgaag tctaatgact
     2041 ttgccggtaa accacgctct ttagatacat actcttgtga agcacctaag attgatggtt
     2101 ttaattttac attacccggc ttgtaaacac cgtgtacgtt accaaatgct gccgcaatcg
     2161 tgaaacgtgg gctgattggg cttaattggt cgtaaacata taaaacttca gaaggttggg
     2221 tgtaaagttt agattcatct acatcagaat tatctacgcc atcttcttca ccaccggtta
     2281 cgccgatttc gatttcaagg gtcataccga ttttgtccat acgggctaaa tattcacggc
     2341 agatttccat attttcttcg attggctctt cagataaatc gatcatatgt gaagagaata
     2401 acggacgacc ggtttctgcg aagtgttttt cgcctgcttc aagtaagcca tcgatccaag
     2461 gtaataagtt tttcgcagcg tggtcggtgt gaagaatcac aggcacacca tattcttctg
     2521 ctaattgatg aacgtgtttt gcacccgcaa tcgcccctaa tacatctgca cgagcgcctg
     2581 aagccggctt aatgccttta cccgcataga actgcgcacc accatttgag aattgcacga
     2641 ttaccggtga ttttacacga gcggctgttt ctaatacggc attaactgaa tctgaaccca
     2701 cgcagtttac tgccggaata gcgaagttgt gttctttagc ataagcgaaa actttttgta
     2761 cgtcgtcgcc tgttactaca cccggtttta cgatgtttaa taatgacatt tttttcttcc
     2821 tttgtatgaa atgtgcaaaa gcacattgtt aaaatatacg gccaaatctt gcaaaatttt
     2881 cacaaaattt gaccgcttgt aactgttagc cgttagctcg tttttctaag atttccactg
     2941 ccggtaatac tttaccttcc acgaattcta agaacgcacc gccaccggtt gaaatgtaag
     3001 aaattttgtc tttgataccg aataaatcaa tcgcagctaa ggtatcgcca ccaccggcaa
     3061 ttgagaatgc accgtttgcc gttgcttctg caatcgcatt tgaaatcact tctgttcctt
     3121 tacggaagtt agggaactca aacacgccga ccggaccatt ccaaaggatg gtttttgaat
     3181 tacggataat ttcagctaat tgctctgacg atttttcacc aatatcgaaa attgattcat
     3241 cagctcgtac ttcactcacc gctttttccg ttgccggtgc agtttcagag aattcagtac
     3301 ctacacgcac atcaaccgga acaggaatat tggttacttg tgctaaacgt tttgcttcag
     3361 ggattaaatc ttcttcgtat aatgatttac ccacagcgtg accttctgcg gcaataaagg
     3421 tattggcaat accaccgccc acgattaatt ggtcggcaat ttttgaaagc gaatcaagca
     3481 cagttaattt agtagatact ttagaaccac ccacaatcgc taacattgga cgttgtggct
     3541 cttttaatgc tttgcctaat gcatctaatt cagcggctaa taacggacct gcacacgcaa
     3601 caggggcata ttctgccaca ccgtaagttg aaccttccgc acggtgagct gtaccgaatg
     3661 cgtccattac aaacacatca caaagtgatg catatttttt tgctaactca gggtcgtttt
     3721 tcttctcacc tttgttaata cgcacgtttt caagcaccac gatttcattc tcgtttactt
     3781 caacaccgtc taagtaatca cgcactaaac gaacaggaac acctaaatct gatgcattta
     3841 agtaatcaac tacaggttgt aaagagtttt cctcttcaaa tacgccttct gtcggacgac
     3901 ctaaatgcga agttaccatt actttagcac ctttttgtaa cgctaatttt aaggttggaa
     3961 tggtagcaac aatacgggca tctgatgtta ctttgccatc ttttaccggt acgttaaggt
     4021 cagcacgaat aaataaacgt ttacccgcta aatcaaggtc agtcatttta ataacagaca
     4081 tagtttgttc ctctttagat taaaatttaa aagtgataac ggtcggatta tatcagtttc
     4141 taatcatttt gggctaacct agatcaaata aatgattaat tttttatcat tttagaatgc
     4201 tattatcctg actgttctta ttccccccca atatgcttgg ttaattaagc aagaattgca
     4261 aattccccac aaaatttaac cgcttgtcac taaaaataaa gctgtttgaa aatccattca
     4321 aacagcttat agaatttaga gtgaattaaa gaaaatcacc aagataatca ccggaatcac
     4381 aaagcgaaca tagttaaacc aaatagtggt aaacatttta cccgcaccta attcctcctt
     4441 cgcctcttct tttagaacaa agccaacgaa aatcgcgcta cctaaggcgg ttaaaataaa
     4501 cagaatattg ccactaatat aatcgaaggc atcaaaaatg ctcttgccca taacctgcac
     4561 atcttgcaat atattgtcac ttaatgctga tggaatatta cccaacagaa aaatagtagc
     4621 caaagtaata aaaatagctt tttgacggct aatctttgcc ttctcttgca atgcagtgat
     4681 aataacttca taaatagtta acgaggttgt taatgccgcc accactaata gactaaaaaa
     4741 gataaccgca aaaactgttc ccccccacat atttgagaac acaatcggca aactttggaa
     4801 tactaaagtc ggacctgaat ttggagcaac gccaaagcta aataatgacg gaaaaatcat
     4861 aaaaccggca agtaccgcaa ttaaggtgtt catcacccca gtaattgttg ctgtttttac
     4921 taaattctcg ctcttatcaa ggtagcttga aagggttatc aacacaccaa aaccaaggct
     4981 taatgcaaaa aatacttgac ccagcacaaa cacaaacaat tttggtgtga tttttgaaaa
     5041 atcgggcatc agataaaagg caatgccttc agcagccccc ggtaaggtaa tatttcgaac
     5101 caccatcaca atcaggaaaa taaacagaat cggcatcaaa tatttcactg aacgctcaat
     5161 accgtccaca atgcctttta ccaaaataaa ataattcacc aatacaaaaa gtgccgtata
     5221 agcaataatt gtcattgggc tattaaaaat actttgttgg aagaattgtt gggtcgtgcc
     5281 aacggtaaca ggttgagaca gatctagtgt ccccgtgagt aagctaccga tataatttaa
     5341 tacccaacca ccaagtacca tatagtaggc aagaatacca aatgctccaa gcaagcccat
     5401 atagccaaga attttccaac ctgaggcaat ttttttacca ttagcaaaac cggcaaaagc
     5461 atcaatagca ttcactctca ttcggcgacc aattacattc tccactaata tcatagggat
     5521 accaattacg atcatcgcaa tacaaaataa aaacacataa gcaccgcctc cgtgttcccc
     5581 cacaagataa gggaaacgcc aagttgcacc aaaaccgact gttgcaccag caacggtcat
     5641 aatatacgcc aatcggttag accaagattg gcgttcttgt tgttgatttg ccatttaata
     5701 ctccatcggc taacaatacc gcttcaacca acaagcggtc agatttttag aaaatattac
     5761 aaattaaatg aagagtgcga ataactcgcc aactttaacc cttgagccca ccttctgccc
     5821 tattgaacgc tgtacctgaa tttgggtaat atcggcagat tgataaatcc tacgggtaaa
     5881 atcagtatcg tgatttgaaa ttaatacggg aacgcctaat cctttcattt ctaaagccag
     5941 tgttgccaaa cgcccttgtt gctctaggct aaaaccaccg ccagcatatt gcgtaaaatt
     6001 cgtttcttgt gctaaaggag cgtaaggtgg gtcgcagtaa atcacataat ccgttaattg
     6061 attttttgcc aactcaaaga cctgttcaaa atccgcacac acaaaagttg ccttttgtgc
     6121 tttttcagca aaaaaacgta gttctttttc tggaaaataa tgggttttat aacgcccaaa
     6181 gggaacattg tacccttttt tctggttata acggcaaagt ccgttatagc caaatcgatt
     6241 taaatacaaa aaaatcaccg agcgacgaaa aatatctttt gagcgattaa actccgcacg
     6301 gcgtgcttta taaaaggctt ctgtattcgc ttgtgggtga agaaacagtt gctttgtttg
     6361 cgcaatatat tcctcaacat ctgctttcac cacgttgaaa agattaatca agtcaggatt
     6421 aatatcagca agaatataac gttcaaaatc tgtattcaga aagaccgaac ctgcaccaac
     6481 aaaaggctcg actaaacaag ccttttttgg caaatgggtt tgaatatctg gaattaagcg
     6541 atatttaccg ccagcccatt ttaaaaaggc tcgatgctta gggtgattca tttcatttta
     6601 aacattaacg ttgggtaaaa cgctcaatag aggctaatac ttgagattct gtggcttgcg
     6661 atgaaacgta agcttcacca agtgatttca ataaaattag gcgtaattga cctgccagta
     6721 cttttttatc tcgccacata taaggtagat attctgccgg ttccattcca tcaggtgaaa
     6781 ttgttggcaa attggctcgg gccaataatt tttccaagcg agcaacctct tgaggactta
     6841 aatcccccag aatacgagat aattccgcag cctctagcat accaaccgaa acagcctctc
     6901 cgtgtaacca tacaccatag cccatacgtg cttcaatggc gtgaccaaag gtatgtccta
     6961 agtttagtaa tgcacgatct cctttttccg tttcatctcg agcaaccacg tcagctttta
     7021 gctggcaaca acgctgaata caatattcca gctcatcttg cttgagactg accaaatcat
     7081 caatatgctt ttcaagccat tcaaaaaaag taacatcaaa gattgcaccg tatttgatga
     7141 cttccgccaa accagcactg acttctcttt tggataaggt atggagcgta ttggtatcaa
     7201 caatcacaga aacaggctga taaaaagccc caatcatatt tttaccgagt gggtggttta
     7261 ctgccgtttt cccgcctact gaagaatcaa cttgagccag taaagtggtc ggaatttgta
     7321 taaaacgaat accacgttgg taagaggcag ctgcatagcc tgcaacatca ccgattacac
     7381 caccgcctaa agcaattaaa gtggtatcgc gattatgatt tttttctaat aatgcggtaa
     7441 aaatcaaatt taatgattct agcgttttat attcttcacc gtcgggaatc aataccgaat
     7501 caacgtggca acccagctcc tttaacgcat ttgttaccac actaagataa tgtgtcgcca
     7561 ccgttggatt tgagacaatc atcaccttat ctccagattt taatgggcta taactagcag
     7621 gctgatttaa taaccctgca ccaattataa tcgggtaacg acgctctttt aattccacat
     7681 tgacttgtaa catatcttag ctcctttctt acctggctac tgtaaattat caatcatatc
     7741 aataatttga tttgccacta ctttagcgct ctgctcgtcc gtatgaatag taatatctgc
     7801 aatttcttca tacaatgggt tacggatttt cgctaactct tccaacgttt tacgggggtc
     7861 ttctgtttgc aataaagggc gttttttatc tcgctgagta cgttcaaact gtttatccac
     7921 tgtcgtttct aaataaataa cgataccacg agccgataac acattacggt tatctttaga
     7981 taaaatcgaa ccaccgccag ttgaaagcac gataccataa ttttgcgtca gttcatttag
     8041 aatacgttct tcacgcttac ggaaaccctc ttcaccttca acatcgaaga tccaatcaat
     8101 atccgcacct gctcgttctt cgatcacact gtcggaatcc ataaattcca tacctaatgt
     8161 ttgagcaagc tgacgaccaa tcgtactttt acctgctccc atcggcccaa tcaaaaaaat
     8221 attacgtttt tcagccatta tttcttcttc attttaaaat ttactaaaca tttgatctgt
     8281 gaaattaaaa gaaaaaatga ccgcttgttc tacaagcggt ctgatttctt taaaaaattg
     8341 caataaaact catttattga ctaaggaata tccaaatata actcacaaat cgcccaaaat
     8401 aaaattggca cttattatcg caagaaatcc ccctattttt caacttttaa gagcattatc
     8461 cttgtaataa attattagaa taattcaccg ctttttagca cccctggtgg aggtaatcct
     8521 aaacgtaacg gcgcagattc tgttttttga ggcgcttttt cagtataagc tctctctaca
     8581 atataacgtt ttgtaggctc agtaccctta ataaaatact ctttacgtcc atttcctaag
     8641 aaaccactat tagggtcaat attaacctca ataatatttt ttggaagggt acttttttcg
     8701 acaggcttat ctgacaatgc aactttcata taatttgtcc aagctggtaa agcagtacta
     8761 gaacctgaag cacctctacc taatactctt ttattatcat caaagccaac gtacacaaca
     8821 gtagaaatat tagcaccaaa tcccgcatac caagttgcct tggcattatt ggttgtacca
     8881 gtcttcccgc ccacatccgc tcgttttatc gtattgagca ttttatagct tgttcctcgc
     8941 cagccatatt caggctcacc agtaattgct gtagctaaag cactacgcat taaaaaagcg
     9001 agttcatcac taataacatg aggagcgtaa cgtaaccctt tgatatgatg agaagattct
     9061 gccattaagc tcggcgcatt tttctcgcta ttgttcgctt gtaattcagg ttctgaatcg
     9121 ccaacatctt ccacaacatc gtcgtcatca ttattcgagg aattcgctat agtttgtaca
     9181 ccgacttgag cttcatcatg aattttgact gattcaaaat atttaggctc agggtaaaca
     9241 actgggctat cgcaactatt acaagctact acaggatttg cttgatataa ctcgtagcct
     9301 tgggcatcaa taatacggtc aatgatatat ggttcaatca aataacctcc attattaaat
     9361 actgcataag ctcgagccat ttctaatggc gtaaaagatg cagcacccaa tgcaagagat
     9421 tctgttgcaa catactgatt tcggttaaag ccaaaacgtt gtaagtagtc tgcaacataa
     9481 tcaatccctg ccatttgtaa tatacgaata gccaccatat ttttcgattt acctaatgca
     9541 acacgagttc tcaacgggcc gccataaacc ccatcggcat ttttaggtcg ccactctttt
     9601 tgccctttct ttttaatgac aataggagaa tcgctaattg ttgttgaaag acttagccct
     9661 ttattcattg ccgctgtgta aataaacggt ttaatcgcag agcctacctg aactaatgac
     9721 tgagtcgcac gattgaaacg gctttgttca aagctaaagc ctccaacgat agattcaatg
     9781 gcaccgtttt cactattaat tgacactagg gctgaattta cctccggaat ttgtcctaaa
     9841 gcccactccc tatttttatt ttgacgtacc caaatttgtt cacctgcttt taacccttta
     9901 ggtgcaaaag aagcatttgt acgttttaaa acagagatat caccatttgc caataaaatt
     9961 gtatattttg atttatctgc ttgcattaca acagctggtg taaacggctc tgattttggc
    10021 agcttactta aatgatcgat aattttctca tcgtcccaag cagaactacc tgtccataat
    10081 ttttcagcgc ctcgccaacc atgacggcgg tcataatcaa tcaaattttc acgtaacgca
    10141 tcttgtgctg ctttttggtc tgctgaaagt accgtggcgt acacttttaa gcctttgtta
    10201 taagcaatat tttctccata gcgtttcaca atttcttgac gaaccatttc tgtcacataa
    10261 tccgctcgaa attctaatgt cgcaccatag tagttagcta ctactggctc tgctttagct
    10321 ttctcatatt cctcttttgt aatatctccg gtttctagca ttctcccaag cactacatta
    10381 cgacggtctt ccgcccgttt tactgaataa agtggattca tcgttgaagg cgcttttgga
    10441 agccctgcaa taattgctat ttcagaaagg gttaaatctt tcaaagattt attaaaataa
    10501 gttttagccg cagcggcaac accgtgagaa cgatacccta ggtaaatttt gtttaaatac
    10561 agctccagaa tctcattttt actgagaacc tgttcaattt ctaaagctaa aattgcctct
    10621 ttggccttac gctctaaact acgttcaggt gttaagaaaa agtttttcgc cagctgctgg
    10681 gtgattgtac ttgcgccttg agtatctccc tggctagtgc gccatattgc acgcataata
    10741 cctttaggat cgatcccttt atgctcgtaa aaacgtgcat cttcggtagc aagaatcgct
    10801 tttactaaca tcggtggaat atcatcaagc ttgaccggaa tacggcgttc ttctcctact
    10861 tcaccaatta atttaccatc taaggtaaaa atctgcatag gctgctgtaa ctctacattt
    10921 ttcagcgttg ccacatcagg caaatcagat ttgaaatgca tgtacagtaa accaccaatt
    10981 accccaccta aaaccaagag tgaaagtaaa gcactaaata ttatttttgc gatccgcatc
    11041 gaaaaaatct cttttggtta atgacgaaac ataaatttaa agccaatatt aggtcactaa
    11101 gtataagcta aaaacgctta cttcgcataa ctaattgcaa aactttcctt actatactta
    11161 ctatgaaatt acttaaagca cattcaaaaa caccttcaaa ccgtatcatc ttaggcttaa
    11221 gtgaagatga acaacgttac tgcttagtca aaaataaagc agaaaaattc accgtttttt
    11281 ggcaagccaa gcctgcgagc atcgaagagc ttatcggtaa tctcacccca caagaacaag
    11341 caatgatgac gctggttcgc ccgatccctt accaatacat ttggcgaaaa accgttttta
    11401 tggctaacac cctcaatgaa gctcaattac accgtaaggt aattcacatt ttaaaaaatg
    11461 agcagccact tgcattggat ctactcaata ttgactatca gcgatttcca agcagcaacg
    11521 ataatctgga taaagtggtt atctacgccg tgcgaaaaag ttataccgag aatttgagcc
    11581 aatttaacag catcttagat tgtgagctgc attgctatgc acgggctata attcatttaa
    11641 cacaatccca aaataatcag cctgcgccct gtttttcatt taaacagaag tacttccaat
    11701 ttaccgagac ggaattactg atattgcaaa cagaacctga ggattgtatt catctatctg
    11761 atctcaaaat tgaccatctt gaaatcgagt gtgagcaaga gaaacagcta tattgcctcg
    11821 ccttaggagc aagtttatgg aatggcaagg tattgattta agtgctaatc gaaaaaataa
    11881 ctggtttgcc ggcagtgata aaggcatcaa aaacgtgatt tatacacttt tattatctgc
    11941 cctcattagc ttggctctga tttttctcta tttgcaaaaa aatcaagaaa ttcaaccgct
    12001 tgcacagcaa ttagagctgg ta
//
LOCUS       DANLVT010000072        11758 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.072, whole genome shotgun sequence.
ACCESSION   DANLVT010000072 DANLVT010000000
VERSION     DANLVT010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11758)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11758)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11758
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.072"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(6..82)
                     /locus_tag="PXC99_001664"
     tRNA            complement(6..82)
                     /locus_tag="PXC99_001664"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(46..48),aa:Pro,seq:tgg)
     gene            complement(107..182)
                     /locus_tag="PXC99_001665"
     tRNA            complement(107..182)
                     /locus_tag="PXC99_001665"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(147..149),aa:His,seq:gtg)
     gene            complement(212..288)
                     /locus_tag="PXC99_001666"
     tRNA            complement(212..288)
                     /locus_tag="PXC99_001666"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(252..254),aa:Arg,seq:ccg)
     gene            complement(447..1169)
                     /gene="rffM"
                     /locus_tag="PXC99_001667"
     CDS             complement(447..1169)
                     /gene="rffM"
                     /locus_tag="PXC99_001667"
                     /EC_number="2.4.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide
                     N-acetylmannosaminouronosyltransferase"
                     /protein_id="HDL5418107.1"
                     /translation="MFDKVIIRGIALQAVKNREIFANWLMNEKRIQFGRLVAINAEKV
                     ILSEKNPLLRRVIDEAEFNYADGISVVQSIRKKYPNYKIERIAGADLWETLMQRAGAL
                     NVPVFLVGSSADTLTKVEAKLAQWKVNIVGRQNGYFKAEQEQDVIEQIKASGAKFISV
                     AMGTPKQELFIQQLQQQYPQALYMGVGGTYDVFAGKVKRAPKIWQNLGLEWLYRLLKQ
                     PTRWQRQLNLLKYAYYYLTNQL"
     gene            complement(1159..2430)
                     /locus_tag="PXC99_001668"
     CDS             complement(1159..2430)
                     /locus_tag="PXC99_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WzyE family oligosaccharide polymerase"
                     /protein_id="HDL5418108.1"
                     /translation="MNNLIPLGGFYLVSVGLFFSLLYQLYQKSGISFHLLFSLLYFVT
                     FYAGFPFSLIMAFGFDYPLPELKTQWQVFTAAGVGYLIYYVVYSRLWSAVSQPTALVA
                     NFQAKTTACILAAVAVVALLYFLYLNGFLLFKLEKYSQLFAKDRVILSALKRFFYFLL
                     PALLIFCFLYKNKTAWWALLIVGGAFGILSYVAVGGTWANLALAVGFFLLIGLQQGYL
                     SLSKVIAVSLIGVVAMFFLALARYKLTLSGSEMIYTFLYLSRDTFSPWENLARVFSNE
                     VEYQGLMPIVRDFYVYIPQSLWQERPEIVWNTANYFTKVILGNQSGLAISPTLLGSFY
                     IMGGFSVMALGMGIVAAMIKALDNLFAYAKACNSALLQAYCFGNLFNLIVLVREGIDA
                     FVSRFCFFTLIFMACYLLAKILSMGKNNNVR"
     gene            complement(2423..3493)
                     /locus_tag="PXC99_001669"
     CDS             complement(2423..3493)
                     /locus_tag="PXC99_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDP-N-acetylfucosamine:lipid II
                     N-acetylfucosaminyltransferase"
                     /protein_id="HDL5418109.1"
                     /translation="MLPIYHILGSEIEHHNQQVLTFFQQELLPLLPDSEHFFYVVGKP
                     SLQTAFPHLRIKQFSSQKAIANALIAKKRQNPTACFLLHGQFNPWIWLAIALGRLPTT
                     NLIWHIWGADLYEMATSWKFKLFYPFRRVAQQKILQVWATRGDLDHLWRNMRTRSEQD
                     HLIYFPTKLGDQIKISPTQNDRLTILLGNSGDPANELIQALSEIHQRLGNNVRIIIPM
                     GYPENNESYIRQVEAYSKRLFLAENLQILRKKLSFEEYVTLLSHCDLGYFNFKRQQGI
                     GTISLLISHNVPCVLHSANPFGLDLQAEKVPYLLAENLTASQIQTTKQQLKSIDKNRI
                     AFFAPGYTKLWQQRLIELMQNE"
     gene            3680..5101
                     /gene="glnA"
                     /locus_tag="PXC99_001670"
     CDS             3680..5101
                     /gene="glnA"
                     /locus_tag="PXC99_001670"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011298219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HDL5418110.1"
                     /translation="MSNAIANVSKLIQDNDIKFVLLKFTDIKGKEHGVSLPVSLVAND
                     LEDLFEEGKMFDGSSVEGWKAINKADMLLMPIAETAVVDPFARIPTLSIRCSIYDPNT
                     MQSYDRDPRSIATRAENYLKSTGIADSVMFGPEPEFFLFDDVRFSTEMNNVSYRIDDV
                     EAAWNTNRKFEEGNKAYRPLKKGGYCAVAPIDTAHDIRSEMCLLMEEMGLVIEAHHHE
                     VATAGQNEIATRFNSLTLKADETQIYKYIVQNVAVEHGKTACFMPKPFAGDNGSGMHC
                     NMSLSKDGKNVFMGDKYAGLSETALYYIGGIIKHAKALNAFTNPTTNSYKRLVPGFEA
                     PVLLAYSASNRSASIRIPAVTSPKATRVEARFPDPMANPYLCFAALLMAGLDGVINKI
                     HPGDAMDKNLYDLPPEELKDIPTVASSLESALDALSNDFEFLTQGGVFTKDFIDAYIG
                     IRRKEVERVNMTPHPVEFELYYS"
     gene            complement(5145..6288)
                     /gene="rffA"
                     /locus_tag="PXC99_001671"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /pseudo
     CDS             complement(5145..6288)
                     /gene="rffA"
                     /locus_tag="PXC99_001671"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251256.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxygalactose transaminase"
     gene            complement(6275..6919)
                     /gene="rffC"
                     /locus_tag="PXC99_001672"
                     /gene_synonym="wecD"
     CDS             complement(6275..6919)
                     /gene="rffC"
                     /locus_tag="PXC99_001672"
                     /gene_synonym="wecD"
                     /EC_number="2.3.1.210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxy-D-galactose
                     acyltransferase"
                     /protein_id="HDL5418111.1"
                     /translation="MKPDQWLSDFFGREIVQVKVAADDFRQIARLQKQGFVLVEGELE
                     FELALATFSENMTACRPADMADLPDLNLLFGSAFPDSRFRSPYFSREENQRFYRTWIE
                     NAVKGKFDDIGLVQCNADGQIQGAVTVRLLAQQQAKIGLLAVKPDCRQQGIGSELLNA
                     AIAWAKQQNAKKLMITTQLSNQKAIRFYQAFGASIKAVYYWFYPALEKYDDEQS"
     gene            complement(6916..8163)
                     /gene="wecC"
                     /locus_tag="PXC99_001673"
     CDS             complement(6916..8163)
                     /gene="wecC"
                     /locus_tag="PXC99_001673"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HDL5418112.1"
                     /translation="MMSKTEFNTICILGLGYIGLPTSVVFANAGKQVIGVDINPQVVA
                     SLNQGNIHIIEPDLQTAFTQAVKKGNFFATAKPQPADAFIIAVPTPLCGKQPDLTYIQ
                     NAAAMIAPCLRKGNLVVLESTSPVGTTENLAEWLSQARPDLAFPADVSIAYCPERVLP
                     GNIMTELVENDRIIGGLSEQCGQQAVDLYQIFAKGRCVTTTARTAEMCKLVENSFRDV
                     NIAFANEISMICDALKINVWELIELANLHPRVNILQPGAGVGGHCLAVDPWFIVSTSP
                     QQARLIRTAREVNDSKPQWVIEQVKTSVADCAMEQDCKPSELTIACLGLAFKPNIDDL
                     RESPALAITRQLAAWHQGSLLAVEPNIQQLAGEKITLVDLNTALSQADILVLLVDHTS
                     FKQISREQIRQRHIIDCRGVWVR"
     gene            complement(8204..9016)
                     /locus_tag="PXC99_001674"
     CDS             complement(8204..9016)
                     /locus_tag="PXC99_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS chain length-determining protein"
                     /protein_id="HDL5418113.1"
                     /translation="MKTLFYRLLVLILFAAIGAGAGYGLSYTQPEKWKVTAQFEQPTI
                     PDLGNYYSLLSTYHFLNSNSQEANSQTAQQQASEQVYAEFKRNLTSADLLQAYLLQTE
                     AVKLKAQVAKKSPAVVAAELVEQFRFEKDMATSADNVSLIAENAEEAQKLLADFIPLV
                     NTQARDKLNADLIAKWKVLFQQIKTASELNINGKQGSQDWAAKLQMMRSVQPLDNQLT
                     AYRLVKSPSVPLKSESPDPPILADDWGIKWLTAGLYAQFCGESESSTCGTLI"
     gene            complement(9027..10091)
                     /gene="wecA"
                     /locus_tag="PXC99_001675"
     CDS             complement(9027..10091)
                     /gene="wecA"
                     /locus_tag="PXC99_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--undecaprenyl-phosphate
                     N-acetylglucosaminephosphotransferase"
                     /protein_id="HDL5418114.1"
                     /translation="MWLTFLTVFIVSFLALIVMRPVAEFVGLVDKPNFRKRHQGLIPL
                     IGGIALFIGNLTFYFMQWQDMRLPELYLTAVTILLIIGVLDDRFDISPLLRAGIQAAL
                     AGAMIYSGLSLSSLGQIIAPFSIELGWLGIVFTVFITIGVINAFNMVDGIDGLLAGLS
                     SVSFAGLGTLMFINGEPSLGYWCFALIFVLLPYAMFNLSLFGAKWKVFMGDSGSMLIG
                     FTIIWILLLSTQGQGSPISPITGLWLIAVPLIDMVAVIIRRLKKGKSPFKPDRLHLHH
                     LMMRAGLTSRQALLVITLWAGFCSTIGVLGEVYYWNQWVMMLMFIGLFFLYAYSITHA
                     WRVTRFVRRLKRRAKRSKQL"
     gene            10233..11513
                     /gene="hemL"
                     /locus_tag="PXC99_001676"
     CDS             10233..11513
                     /gene="hemL"
                     /locus_tag="PXC99_001676"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HDL5418115.1"
                     /translation="MSISEQLFEQAQKVIPGGVNSPVRAFKGVGGTPVFIEKAEGAYI
                     TDSDGKQYIDYVGSWGPMVLGHNHPAIIDAVLKAVPKGLSFGAPTAAEITLAELVCKL
                     VPSIEMVRMVSSGTEATMSAIRLARGYTNRDKIIKFEGCYHGHSDSLLVKAGSGALTL
                     GQPSGPGVPADFAKHTLTCTYNDLDSVKAAFEQYPNEIACLIVEPVAGNMNCIPPQEG
                     FLQGLRDLCTQYGAVFIIDEVMTGFRVALGGAQSYYGVTPDLTTLGKIIGGGMPVGAF
                     GGKKEIMEYIAPTGPVYQAGTLSGNPIAMAAGLACLTELSKAGNETILAEKTKTLAEG
                     FKALADKHNVPLTVQYVGGMFGLFFTEQKAVNNFQEVMKCDAAKFNRFFHLMLEQGVY
                     LAPSAFEAGFMSLAHSDEDIARTLEAADKAFAQL"
BASE COUNT         3470 a         2748 c         2398 g         3142 t
ORIGIN      
        1 taaattggtc ggcgagatag gatttgaacc tacgacccac tggtcccaaa ccagttgcgc
       61 taccaagctg cgctactcgc cgtctgatac tcacaagagt attgaatggg gtggctaatg
      121 ggattcgaac ccacgacaac tggaatcaca atccagggct ctaccaactg agctatagcc
      181 accattgtgt tgatagtgcc gcattgacat ctggcgcgct cgacaagatt cgaacttgcg
      241 acctttggct ccggaggcca acgctctatc caactgagct acgaacgctt cgatttacat
      301 caattcaact taatgcgtcg caacggaggc gtatattata gatttcactt tcccttgtct
      361 agcacttttt aaaaaaaatg taaaaaaatg tattgtttgg ttttatttta ttcaaaacgt
      421 ttaataaata tcaaaaaatg cgttttttag agctgatttg tcagatagta ataggcatat
      481 tttagtaaat ttaattgtct ttgccagcgg gttggctgtt tcaatagtcg ataaagccat
      541 tccagcccca aattttgcca aattttaggt gctcgtttca ctttaccggc aaacacatcg
      601 taagtcccgc caacacccat atataaggct tgtggatatt gttgttgtaa ctgttggata
      661 aaaagttcct gttttggagt tcccattgcc acactaataa acttcgcgcc acttgcttta
      721 atttgctcta taacgtcctg ttcttgctcc gccttaaaat agccattctg cctaccgaca
      781 atattcacct tccattgtgc caattttgct tccaccttcg ttagggtatc cgccgagctg
      841 ccgaccaaaa acaccggcac atttaacgct ccggctcttt gcattaaggt ttcccataaa
      901 tcggctccgg caattcgctc tattttatag tttggatatt tttttcgaat cgattgaaca
      961 acactgatgc cgtctgcata gttgaactcg gcttcatcta tcactcggcg taacaacgga
     1021 tttttttccg acagaatcac tttctcagca ttaattgcca ctaatcttcc gaactgaatc
     1081 cgcttttcat tcatcagcca atttgcaaaa atttcccgat ttttgaccgc ttgtaacgca
     1141 atgccccgaa tgatcacttt atcgaacatt attatttttc cccattgaaa ggattttcgc
     1201 cagcaaatag caagccataa atatcagcgt gaaaaagcaa aaacgggaaa caaatgcatc
     1261 gattccctct cgcactaata cgatcaaatt gaataaattg ccgaagcagt aggcttgcaa
     1321 caaggcggaa ttgcacgctt tggcgtaagc gaataggtta tctaaggctt taatcatggc
     1381 agctactatc cccattccca acgccataac gctaaatccg cccataatat agaaagagcc
     1441 gagtaaggta ggcgaaatag ctaaccctga ttggttgcct aaaatcactt tggtaaaata
     1501 attcgccgta ttccagacga tctcagggcg ttcttgccat aaagattgtg ggatatatac
     1561 atagaaatcc cgcacaatcg gcattaaacc ttgatattcc acctcattag aaaatacacg
     1621 agccaaattt tcccaaggcg aaaaagtatc tcggcttaaa tataagaagg tgtaaatcat
     1681 ctcgctaccg gaaagggtaa gtttgtaacg ggctagagcg aggaagaaca tcgccaccac
     1741 gccgattagg cttacggcaa tcacctttga taacgacaga tagccttgct gcaatccaat
     1801 caataagaaa aagccaaccg ctagtgctaa atttgcccat gtgccgccca ctgccacata
     1861 gcttaatatg ccgaatgccc caccaacaat cagtaacgcc caccacgctg ttttattctt
     1921 atataggaag caaaaaatta acaacgccgg caataaaaag tagaaaaatc gttttaatgc
     1981 cgaaagtatg accctatctt tggcaaacag ttggctatat ttttcgagtt tgaaaagcag
     2041 aaaaccgttt aaataaagga aatatagcag ggcaacaact gccacagcgg caaggataca
     2101 agcggtcgtt tttgcctgaa aatttgcaac aagagcagtt ggttgcgaca cagcactcca
     2161 caagcgtgaa tagacaacgt aataaatcaa atagccaaca cctgctgccg taaaaacttg
     2221 ccattgtgtt tttagctccg gcagcgggta atcaaagcca aatgccatta ttaacgaaaa
     2281 cggaaaaccg gcgtaaaaag taacaaaata gagcaaacta aacagtaaat ggaaagaaat
     2341 ccccgatttc tgataaagtt gataaagtaa gctgaaaaat agcccgacag aaacaagata
     2401 aaatccgcca agtggtatta aattattcat tttgcattaa ttcgattaat cgctgttgcc
     2461 atagtttagt gtagcccgga gcaaaaaacg caatgcggtt tttatctatg ctctttagtt
     2521 gttgtttggt tgtttgaatc tgtgaagcag tcagattttc cgccaacaaa taaggcactt
     2581 tttctgcctg tagatccaac ccaaacggat tggctgaatg taacacacaa ggtacattat
     2641 ggctaatcaa aaggcttatc gtgccaatgc cttgctggcg tttaaaattg aaatagccga
     2701 gatcacaatg gctcaataac gtaacatact cttcaaagct cagcttcttc cgcaaaattt
     2761 gcaaattttc cgccaaaaat aaccgcttgc tataggcttc cacctgccga atatagcttt
     2821 cattattttc cgggtagccc attggtatga taatccgcac attgttccct agtcgttgat
     2881 gaatctcgct taaggcttga ataagctcat tcgctggatc gcctgaattg ccgagcaata
     2941 tcgtcaagcg atcattttgt gtggggctaa tttttatttg atcacctaat ttcgtgggga
     3001 aatagattaa atgatcctgt tctgatcttg tacgcatatt tcgccacaaa tgatccagat
     3061 cgcctcttgt tgcccaaacc tgtaagattt tttgttgggc aacacgccga aacgggtaaa
     3121 acagcttaaa tttccacgaa gttgccattt catataaatc cgccccccaa atatgccaaa
     3181 tcaggttggt ggtcggcaat ctgcctaagg ctatcgccag ccaaatccaa gggttaaact
     3241 gcccgtgtaa cagaaaacaa gcggtcggat tttgccgttt ttttgcaatt aaggcgttcg
     3301 caatcgcttt ttgtgaagag aactgcttaa tccgcaaatg aggaaaagca gtttgcagtg
     3361 aaggcttgcc taccacataa aaaaaatgtt cggagtctgg caataacggc aaaagctctt
     3421 gctgaaaaaa ggttaaaacc tgttggttat gatgctcaat ctcggagcct agaatatgat
     3481 aaatcggcaa cattacacgc ttttctctcc ccaccataca aacaatatgc aagcggtaag
     3541 attttagcaa aaatttgcaa cattactgca acttctttta gctttgaaac actaaaaaac
     3601 atcacacact tggttaaaaa atgctatgat aaccgagctt ttttattatt catttatccc
     3661 aacgaggact tattttacta tgtcaaacgc aatcgctaat gtatctaaac tgattcaaga
     3721 caatgatatt aaatttgtct tattaaaatt tactgatatt aaaggtaaag aacacggggt
     3781 ttcgctccct gtcagcttag ttgccaacga tttggaagac ttattcgagg aaggcaaaat
     3841 gttcgacggt tcgtccgtag aaggttggaa ggcaattaac aaagcagata tgttgttaat
     3901 gccgattgct gaaaccgctg tagttgaccc tttcgcccgt attcctaccc tttctattcg
     3961 ttgttccatt tacgacccaa acacaatgca gtcttatgac cgtgaccctc gctctattgc
     4021 aacccgtgcc gaaaactact tgaaatccac cggtatcgcc gatagcgtaa tgtttggacc
     4081 tgagcctgaa tttttcttat tcgatgatgt gcgttttagc accgaaatga acaatgtgtc
     4141 ataccgaatt gacgatgtag aagcggcttg gaataccaac cgtaaatttg aagaaggcaa
     4201 caaagcctat cgtccgttga aaaaaggcgg ctactgtgcg gttgcaccga ttgataccgc
     4261 ccacgatatt cgctccgaaa tgtgtttatt gatggaagag atgggtttag tgattgaagc
     4321 tcaccaccac gaagttgcga cagccggaca aaatgagatc gcaacccgat tcaacagcct
     4381 gaccttaaaa gccgatgaaa cccaaatcta taaatacatc gtgcaaaatg ttgccgtaga
     4441 acacggaaaa accgcttgct ttatgccaaa accgttcgcc ggcgacaacg gctcgggaat
     4501 gcactgtaat atgtcattaa gcaaagacgg caaaaatgtg tttatgggcg ataaatacgc
     4561 cggcttatct gaaactgccc tctactatat tggcggtatc attaaacacg caaaagcatt
     4621 aaatgccttt actaacccaa ccacgaactc ttataaacgt ttagtgccgg gttttgaagc
     4681 accggtgtta ttggcatatt ctgcaagtaa ccgctctgcc tctatccgta ttccggctgt
     4741 gaccagtccg aaagcgaccc gtgtagaagc acgcttcccg gatccaatgg caaacccata
     4801 cctttgcttt gccgccctgt taatggctgg cttagacggt gtgatcaaca aaatccaccc
     4861 gggcgatgca atggataaaa acttatacga tttaccgccg gaagagttaa aagatattcc
     4921 aacggttgcc tcgtctttag aatccgctct tgacgcatta agcaatgatt ttgaattctt
     4981 aacacaaggt ggcgtgttca cgaaagactt tattgatgct tatatcggta ttcgtcgcaa
     5041 agaggtggaa cgtgtaaata tgactccgca cccggtagaa tttgaacttt actattcata
     5101 gtaacaacat atagcaaaaa acggctgaaa cactcagccg ttttttattg attgaagaaa
     5161 gcaagcactg cttgaataac acgctcttgc tcctgcttac tcaaattata aaacagtggc
     5221 aatcttacca accgttcgct ttctaaggta gtaaagcgat catcacctgc taatcgacct
     5281 aatttctgcc ctgccggact gctgtgcaac ggcacataat gaaacacggt taagatattc
     5341 tgtgccttca taaaatcaat aaaagcagtt ctctgcttca agtcacttag ctttaagtag
     5401 aacaaatgcc cgttatggcg acaatattcg ccaatgcgag gaagctcgca cttagctgtt
     5461 tgggcaagtg gcaaaaaggc ttgatagtaa ttgtgccaaa gggttaaacg ctgttggttg
     5521 attttatctg cctctataag ctgagcatac aaataagccg cttgaatttc cgacattaaa
     5581 aaacttgaac caatatcctg ccagcgatat ttatctacct caccacgaaa aaattggcta
     5641 cggttagtgc ctttctctct gatgatttcc gctttttcca gcaaatgcct cattaatcac
     5701 gatcgcccca ccttcaccgc cagcggtata gtttttggtt tcgtgaaaac tatagcaacc
     5761 aatatgcccg atggaaccta acgccctacc tttataaaac gaattgactg cctgtgccgc
     5821 atcttctacc acataaagcc cgtatttttc ggctgttgcc attattgaat ccatatcaca
     5881 agcaatgccg gcataatgca ccggcacaat cactttggtt tttggggtaa tggcttgctc
     5941 aattttgcgt tcatcaatat tcattgtatc cggacgaata tccacaaaca caatctttgc
     6001 cccacgcaac gcaaacgcat ttgcagtaga gacaaaagta tagctcggca taatcacttc
     6061 atcgtccggc tgaatatcca gcagtattgc cgccatctct aacgcagccg tgcaagaagg
     6121 ggtaagcaac actttgctac gggccaggtt ttcaagccac tgctcacata agcgggtgaa
     6181 tttaccaccg cccgaaagct gccctgttgc catcgcctgt tctatatagg cttgctccgc
     6241 ccccacaacc gggggttgat taaacggaat aaaatcagga ttgttcatca tcgtattttt
     6301 ccaaagcagg gtaaaaccaa taatacaccg ccttaatgct tgcaccaaac gcttgataaa
     6361 aacgaatcgc tttctggtta ctcagctgag tggtaatcat cagttttttc gcattttgct
     6421 gtttcgccca cgctatcgca gcatttaaca attccgagcc aataccttgt tgtcggcaat
     6481 caggctttac cgccaataat ccgattttcg cttgctgttg ggcaagtaag cgaaccgtta
     6541 ccgccccttg aatttgcccg tcagcattgc attgaaccaa gccaatatca tcaaacttgc
     6601 cttttaccgc attttcaatc caagtccggt aaaagcgttg attctcttcc cttgaaaaat
     6661 agggcgaacg aaaccggcta tcgggaaatg ccgaaccaaa caataagttc aagtcgggca
     6721 aatctgccat atccgccggg cgacaagcgg tcatattttc agaaaatgtt gcaagtgcca
     6781 gctcaaattc caattctccc tccacaagta caaaaccttg tttttgcaac ctagcgattt
     6841 gcctaaaatc atcagccgct acttttactt gcacaatttc tctaccgaaa aaatcggaca
     6901 gccattgatc cggcttcatc ttacccacac tcctcgacaa tcaataatat gccgttgcct
     6961 gatctgttcc cttgaaattt gcttaaatga agtgtgatcc actaacaaga ctaaaatgtc
     7021 tgcctgcgaa agtgcggtgt tgagatcgac taaggtgatt ttttcgccag ccagctgttg
     7081 aatatttggc tcaaccgcca acaggctacc ctgatgccaa gcggcaagtt gccgggtaat
     7141 cgctaatgcc gggctttccc gcaaatcatc aatattcggc ttgaaagcta gccctaaaca
     7201 agcgatggtt agctcacttg gcttacaatc ttgctccatc gcacagtctg cgaccgatgt
     7261 tttcacttgc tcgattaccc attgcggttt gctgtcattc acttctcgtg ccgtgcgaat
     7321 aaggcgagcc tgttggggcg atgtggaaac gataaaccac gggtcaaccg ccaaacaatg
     7381 tccgcccacc cctgctccgg gctggagaat atttactctc gggtgaagat ttgccaattc
     7441 aattagctcc cacacattga tcttcaacgc atcacaaatc attgaaattt cattggcaaa
     7501 ggcaatgttc acatcacgaa agctgttttc caccaacttg cacatctccg ctgtgcgagc
     7561 tgtggtggtg acacaacgtc cttttgcaaa aatttggtat aaatcgaccg cttgttgacc
     7621 gcattgttcg cttaatccgc cgataatgcg gtcattttca accaattccg tcattatatt
     7681 acccggcaaa acacgttcag ggcagtaggc aatagacaca tcggctggaa aggctaaatc
     7741 agggcgagct tggcttagcc attcggctaa attttctgtt gtaccgacag gcgaagtgga
     7801 ctccagcacc accaaattcc ctttacgcaa acaaggggca atcatagcgg cggcattttg
     7861 aatataagtg agatcgggct gcttcccgca aagtggggtt ggcacggcga tgataaaagc
     7921 atcggccggt tgcggtttgg cagttgcaaa aaaattacct tttttgaccg cttgtgtgaa
     7981 ggcagtttgt aaatccggct cgataatatg aatgttgcct tgattaaggc ttgccaccac
     8041 ttgcggatta atatccaccc caattacttg cttgccggca ttggcaaaaa cgactgaggt
     8101 cggcaagccg atatagccta accccagaat acaaatagtg ttaaattcag ttttactcat
     8161 catcagttac aaagagaaat ggcacactaa attgtgtgcc attttagatt aaagttccgc
     8221 aggttgagct ttcgctttca ccgcaaaact gagcataaag cccagcagta agccacttaa
     8281 tgccccaatc atcagccaaa ataggcggat caggcgattc tgatttaagt ggaacgctag
     8341 gcgatttaac caagcgataa gctgtaagtt ggttgtctaa cggctgaaca gaacgcatca
     8401 tttgcagttt agctgcccaa tcttgtgagc cttgcttacc gttaatattc aactccgaag
     8461 cagttttaat ttgctggaac aagactttcc atttcgcaat taaatcggcg tttaatttat
     8521 ctcgagcttg ggtgtttacc aacggaataa aatcggctaa taatttttga gcctcttccg
     8581 cattttctgc aattaagctg acattatctg ccgaagttgc catatctttt tcaaaacgga
     8641 attgttcaac taattcagcc gccaccaccg ccggtgattt ctttgcaacc tgagctttta
     8701 atttcaccgc ttctgtttgt agcaaatagg cttgaagcaa gtcggcggac gtgaggttgc
     8761 gtttaaattc cgcataaacc tgctcacttg cctgttgctg tgccgtttgg ctattcgctt
     8821 cttggctatt actattcaaa aaatggtagg tggaaagtaa cgagtaataa ttacctaaat
     8881 cgggaatagt cggttgctca aattgagcgg tcactttcca tttttcaggt tgagtataac
     8941 tcagcccata accggcacct gccccgatag cagcaaataa aattagcact aaaagtcgat
     9001 aaaataaggt tttcacaaca tatcctttaa agttgtttgc tacgttttgc acggcgtttt
     9061 agacggcgaa caaaacgggt tacacgccaa gcgtgggtaa tggaataggc gtataggaaa
     9121 aacagcccga taaacattag catcatcacc cactgattcc aataatacac ctcgcctaat
     9181 accccaatgg tggaacaaaa tcccgcccag agggtaatca ccaataatgc ttggcgagag
     9241 gtaagccctg ctcgcatcat taaatggtgt aggtgcaagc ggtctggttt gaacggactt
     9301 ttaccttttt tcaaacggcg gataatcacc gcaaccatat caattaacgg cacggcaatc
     9361 agccacaaac cggtaatcgg gctaattggc gagccttgcc cttgggtgct taacagcaga
     9421 atccaaataa tggtaaagcc gatcagcata ctgcctgagt cgcccataaa cactttccat
     9481 ttcgccccaa acaggctcaa attgaacatt gcatacggca acaacacaaa gataagggca
     9541 aagcaccaat agcccaaact tggttcgcca ttaatgaaca ttaaagtgcc aagaccggca
     9601 aaactcacgc tggaaagccc tgctaataag ccatcaatcc catctaccat attaaacgca
     9661 ttaataacgc caatggtgat aaacacggta aagacaatgc cgagccaacc taattctata
     9721 ctaaaggggg caataatttg ccctaaactg ctgagcgaca agccactgta aatcatcgcc
     9781 ccagctagtg ctgcttgaat cccggcacgc agtaatgggc tgatgtcaaa tcggtcatct
     9841 aacacgccga taatcagcaa aatagttacc gctgtcagat acagttccgg cagccgcata
     9901 tcttgccact gcataaaata gaaagtgaga ttgccgataa ataatgcaat accaccgatt
     9961 aacggaatca acccctgatg gcgtttacgg aagttgggct tatctaccaa accaacaaat
    10021 tccgccaccg gacgcatcac aatcagggct aaaaaagaaa caataaatac ggttaaaaaa
    10081 gtaagccaca tacagggatt gcctcaaaaa atgagtcata aaataggaat gcagaatagc
    10141 ataaggcaac aaaatcgtaa attttttagc gaaaacaagg gcttttcagt acaataacag
    10201 gcaaattttt acatcaaaag aaaggaattg atatgtctat ttcagaacaa ctgtttgaac
    10261 aagcccaaaa agtgattccg ggcggtgtga actcccctgt gcgtgcattt aaaggcgtgg
    10321 gcggcacacc ggtttttatt gaaaaagccg aaggtgctta tattaccgac agcgacggca
    10381 aacaatatat cgactatgtc ggctcttggg ggccaatggt actcgggcat aaccacccgg
    10441 cgattattga tgcggtgcta aaagccgtgc caaaaggctt aagtttcggt gccccaacgg
    10501 cagcagaaat cacacttgcc gaattagtgt gcaaattagt accttctatt gaaatggtga
    10561 gaatggtgag cagcggaaca gaggcaacaa tgtctgccat tcgtttggct cgtggctata
    10621 ccaaccgaga taaaatcatc aaatttgaag gctgctacca cgggcattcc gattctctgt
    10681 tagtaaaagc cggttcaggt gctttaaccc tcggtcagcc aagcggcccg ggcgtacccg
    10741 ctgatttcgc caagcatacg cttacttgca cctataatga tttagattca gtaaaagcag
    10801 catttgagca atacccaaat gagatcgctt gtttaattgt tgagcctgtt gccggcaata
    10861 tgaactgcat tccgccacaa gaaggctttt tacaaggctt acgtgatctt tgcacacaat
    10921 atggtgcggt atttattatt gatgaagtaa tgaccggctt ccgtgtcgca ctcggtgggg
    10981 ctcaatctta ctatggggta acaccggatt taaccacact cggcaaaatt atcggcggcg
    11041 gaatgccggt gggggcattt ggtggtaaaa aagagattat ggaatacatc gctccaactg
    11101 gcccggttta ccaagccggc acgctctcag gcaacccgat tgcaatggct gcaggtttgg
    11161 catgcttaac tgaattatca aaagcaggaa atgaaaccat tttagcggaa aaaaccaaaa
    11221 ccctcgctga aggctttaaa gctcttgcag ataagcacaa tgtgccatta acggtacaat
    11281 atgtcggcgg aatgttcggc ttattcttca ccgaacaaaa agcagtaaac aacttccaag
    11341 aagtaatgaa atgtgatgcc gccaaattca accgtttctt ccacttaatg ctggaacaag
    11401 gcgtgtattt agccccatcg gcattcgagg cagggtttat gtctttagct cacagtgatg
    11461 aagatattgc tcgtacgcta gaggctgcgg ataaggcatt tgctcagctt tagaagaatg
    11521 acaagcggtt gggtttactc aataatttgc aagtttttga gggaatttga ccgcttgtag
    11581 tgcaaatttc tcttacgata gcaattatga tggtgttcgt ctctgacgag tgcttataca
    11641 aactttcatt atgcttaaac aagcacccgt ctggagacgg gcgctatcga gggaatagga
    11701 ttgataaagc aatatatggg cttccaacac ttgcaggcaa ggacaagtct tacacttt
//
LOCUS       DANLVT010000073        11600 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.073, whole genome shotgun sequence.
ACCESSION   DANLVT010000073 DANLVT010000000
VERSION     DANLVT010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11600)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11600)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11600
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.073"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            108..2000
                     /gene="mnmG"
                     /locus_tag="PXC99_001677"
     CDS             108..2000
                     /gene="mnmG"
                     /locus_tag="PXC99_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HDL5418116.1"
                     /translation="MIYNQIYDVIVVGGGHAGTEAALAPARMGLKTLILTHNVDTLGQ
                     MSCNPAIGGIGKGHLVKEIDAMGGLMAKATDVAGIQFRTLNNSKGPAVRATRAQADRV
                     LYRNAVRTALENQPNLDIFQQEVVDILVENNRAVGAVTKMGLTFKARAVVLTAGTFLA
                     GKIHIGLDNYAGGRAGDPAATMLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQ
                     HGDEVLPVFSFMGDVSQHPRQIPCYITHTNDQTHDLIRNSLDRSPMYTGIIEGVGPRY
                     CPSIEDKVMRFADRNSHQIYLEPEGLNTIEVYPNGISTSLPFDVQMGIVNSMKGLENT
                     RIIKPGYAIEYDYFDPRDLKPTLETKAIDGLFFAGQINGTTGYEEAGAQGLLAGINAA
                     LQVQGKEAWYPTRDQAYTGVLVDDLCTLGTKEPYRVFTSRAEYRLLLREDNADIRLTP
                     KAHELGLIDEARWVRFNQKMEAIEQERARLKSTWAHLQMPNLDELNALLANPLAREAS
                     GEDLIRRPEMSYEKLTQIALFAPAIEDKQVAEQVEIAIKYQGYIEHQYNEIERHKRHE
                     NTLIPVEFDYDKVESLSNEVRAKLMQHRPVSIGQASRISGITPAAISILLVNLKKQGM
                     LKRGEL"
     gene            2095..2319
                     /locus_tag="PXC99_001678"
     CDS             2095..2319
                     /locus_tag="PXC99_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418117.1"
                     /translation="MIYLRKLGFSPFDHQMFAQPSWYFCNALVHTNYENLRQGVFVTK
                     AYLVMFLENLLFEKSHSLSNRALRINENND"
     gene            2332..2946
                     /gene="rsmG"
                     /locus_tag="PXC99_001679"
     CDS             2332..2946
                     /gene="rsmG"
                     /locus_tag="PXC99_001679"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HDL5418118.1"
                     /translation="MLAKLNRLLAQAEINLTDQQKEQLVGFVRLLDKWNKAYNLTSVR
                     NPDEMLVKHILDSLVVSRHLQGETFIDVGTGPGLPGIPLAIANPDKQFVLLDSLGKRI
                     TFIKNALRELGIKNVTPVQSRVEEYTESQFDGVLSRAFASLNDMIDWCYHLPTENGKF
                     YALKGVYDEQEIIEIKQPIQLVEVIKLEVPELVGERHLVVLKKP"
     gene            3214..4662
                     /locus_tag="PXC99_001680"
     CDS             3214..4662
                     /locus_tag="PXC99_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5418119.1"
                     /translation="MNRVTNKADEFAKLSTFERIAYGSGDLAQNLVFGTVGGFLLTYL
                     TTVNGISAVAGATIFLIVKWGNVFWDPFVGAFIDKSKPSAQGKYRPYLLKFGIPLVVL
                     ASLLFLPLESVRGSVIYAFLSYFATAMVYSFVNIPYGSLSASLTRDTDEIAKLTTTRM
                     TMANIANLFVYTLFPLFVQLLAPHAELKNTGFFGIELYLGDYMSAAAGPAWFKVYAVY
                     MVIGFVALMLSYFGTKERIIPTAEETDKVKYSDLVNELKRNRPLQILGLFFLIGFTFM
                     FFGNTVWPFYLKYNIGHSEWIASVGLLGSIPGIFLVFLWPKLRRTIGKKNFFYLFLGI
                     FVLGQLCLWVWQFDSFKYSPTLGYIGRFLQQWGLTSATGFMWALVPEVVTFGEFKSKK
                     RVAGIINALMGLFFKIGLALGGIIPGYINAVYGFNGSLLAQTEEALFGINLSMIWAPI
                     ILAIIAGFVMSRYPLSDTDIDHINEKITAYSK"
     gene            4685..5731
                     /locus_tag="PXC99_001681"
     CDS             4685..5731
                     /locus_tag="PXC99_001681"
                     /inference="COORDINATES: protein motif:HMM:NF016497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HDL5418120.1"
                     /translation="MQIQNPVLPGFNPDPSIVRVGDTYYIATSTFEWFPGVRIHESKD
                     LVHWNLVKNVLDTTTLLDMRGNPSSGGIWAPDLSYAEGKFWLVYTDVKITDGAFKDMT
                     NYLTTAKEIQGPWSAPIKLNGIGFDASLFHDDDGRKYLVQQTWDHREYHHPFDGITLT
                     EFDVATMKLKPETQRTIFEGTEVKLVEGPHIYKINGEYYLFAAEGGTVFTHQEVVARS
                     KTLEAHSFQLAPNTPFITNFDTPNSYLQKQGHGSLVDTPSGEWYYASLTARPWNHATE
                     SATDPRGWSTLGREAAIQKVEFDQDGWPYIVGGHGGKTFVEAPKDAIFTEAPIDHSQH
                     DEFDSSTLDINWNT"
     gene            5752..6372
                     /locus_tag="PXC99_001682"
     CDS             5752..6372
                     /locus_tag="PXC99_001682"
                     /inference="COORDINATES: protein motif:HMM:NF036826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-1,4-xylosidase"
                     /protein_id="HDL5418121.1"
                     /translation="MGEVGNGVLKLIGRGSLANTHDLSLIARRWQAFYFDAETKVKFT
                     PFSYQSMAGLTNYYNHSHWSWIFITKNDQGQQVIEVAENKGGLRNGQYTSYLKDKAIV
                     IPDGTEYVWFKTKVRKETYRYEYSFDGKQWHTIPVELDAAVLSDDYVLRSYGGFFTGA
                     FVGLAAVDYSSYESTAEFSYFDYKELGDKQLTDGSFSWEKSESCFG"
     gene            6391..7371
                     /locus_tag="PXC99_001683"
     CDS             6391..7371
                     /locus_tag="PXC99_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HDL5418122.1"
                     /translation="MKQRRFGKTNKMVSEIGLGTWQLGTKWGEPFNHQEAMAILETAY
                     EQGINFIDTADVYNNGQSEKAIGDILKKYPDFFYVVTKCGRALNPHTAEMYTPQAIEK
                     FVDGSLSHLGTEKLDMILLHCPPTLVYRNDEIFTKLEQLKAGGKLIDYGVSIETAEEG
                     LLAMEYDIAAMEVIFNMFRLKPLEQLFPTAQQKNVGIIARVLLASGLLTGRYNACTQF
                     GKDDHRTFNRNGEAFDKGETFSGVDYQLGLQAVEELKALFGTEDLIPYALRWVLMNEA
                     VSTVIPGASKVSQVITNAAVDNFPPLTENEMQKVEDIYNRLIRPSVHHLW"
     gene            complement(7433..8773)
                     /locus_tag="PXC99_001684"
     CDS             complement(7433..8773)
                     /locus_tag="PXC99_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5418123.1"
                     /translation="MFSFLKASPPAEQKVEASRVDAEYRKLRWQVFAGVFIGYAAYYL
                     IRKNFSLAMPYLIDEYGFTKADLGTVGVALSLAYGFSKFIMGNVSDRSNPKYFITIGL
                     LGSAIVSLVFGLVPGVLSSIPIMIILAALNGWFQGMGYPPGAKTMTNWFSTSERGVWW
                     SWWNVSHNLGGGLIGPLAILGLSIFGVWQSLFYLPALIAIVLAFVMFYLMRDTPESQG
                     LPPIDEYKGEKVVEKVESAHTLSSKDIFYKYILNNKFLWAIAIANVFVYFIRYGIIDW
                     APTYLKEVKHFSVDKQSWAYFLYEYAGIFGMLASGYLSDKVFKGHRAPPMLLFLAGVL
                     IAIVVYWKNPAGNPLIDNICLVAIGFLIYGPVMMIGLQAADLVPRVATGTATGLTGLF
                     GYLLGSASAGYVMGKLVDMFGWDGGFYALILSCFLAFAFIALTLFKKTSKQLEV"
     gene            complement(8963..10036)
                     /gene="glpQ"
                     /locus_tag="PXC99_001685"
     CDS             complement(8963..10036)
                     /gene="glpQ"
                     /locus_tag="PXC99_001685"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HDL5418124.1"
                     /translation="MKFKFKTLVAALALSATALGAYAQQSDKLVIAHRGASGYLPEHT
                     LESKALAFGQQADYLEQDLAMTKDNRLIVIHDHFLDGLTDVAKKFPERKRADGRYYVV
                     DFTLDEIKTLEMTENFEVKDGKQAQVYPNRFPMWQSHFTIHTLEEELEFIQGLEKSTG
                     KKIGIYPEIKAPWLHHKEGKDIALETLKVLKKYGYDSKTSPIYLQTFDFNELKRIKTE
                     LLPKLGMDVKLVQLVAYTDWHETEEKDKNGNWVNYDYDWMFKDGAMAEVAKYADGVGP
                     GWYMLVDKEKSKVGNIVYTPLVKELAKYKMELHPYTVRKDALPDFFQNVDEMYDALLN
                     KAGATGVFTDFPDTGVEFLKKQK"
     gene            complement(10106..11551)
                     /gene="glpT"
                     /locus_tag="PXC99_001686"
     CDS             complement(10106..11551)
                     /gene="glpT"
                     /locus_tag="PXC99_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate transporter"
                     /protein_id="HDL5418125.1"
                     /translation="MFGPFKPAPHIAELPADKVDARYKFLRWQVFAGIFFGYAAYYFV
                     RANFDLAQKGLIEAGMYTKTDLGVIGTAAGLAYGLSKFVMAGMSDRSNPKVFLPTGLL
                     LSGLCMTLMGLMPWATSSILVMWVMIFLNGWFQGMGWPPCGRTMVHWWSKSERGTIVS
                     IWNTAHNLGGMVPGAMVLLASALYFSEYGVEATAKDVWQQALYFPGIAAMIAAIPIYL
                     VMKDTPQSCGLPPVEKWRNDYPDDYNEKTYEHDLSTKEIFVTYVLKNKLLWYIAIANV
                     FVYLIRYGVLKWSPVYLGEVKHFNIKGTAWAYTIYELAAIPGTLLCGWVSDKLFKGKR
                     GLTGFIFMILTTAAVVAFWLNPATPESEIAQYAGHAWYENPYQLMDFIWMTTIGFLIY
                     GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGTVAASAVVGWAADKFGWDGGFYVM
                     IGGGVLAILLTFIVMVEEGKHKAKLEDHYGK"
BASE COUNT         3331 a         2449 c         2493 g         3327 t
ORIGIN      
        1 cgcatttaga tcttaacctc tctaaaaatc tatttcccag atgatccctt tttacgctaa
       61 aatatgcgtt catttttcag cagaatttgt aagatagtag aagagatatg atttacaacc
      121 aaatttacga tgtgatcgtg gtcggcggtg gtcacgccgg cacagaagcg gccctagcac
      181 cggcacgaat gggcttaaaa accctgattt taacccacaa tgttgatacc ttagggcaaa
      241 tgtcgtgcaa cccggctatc ggagggatcg gcaaaggcca tctggttaaa gagatcgatg
      301 cgatgggcgg tttaatggca aaagcaacag acgttgccgg gatccaattc cgtaccctaa
      361 acaactcaaa agggcctgcg gtgcgtgcca cccgtgccca agctgaccgt gtgctttacc
      421 gtaatgcggt acgcactgcg ttagaaaatc aaccaaattt agatattttc cagcaagaag
      481 tagtggatat tttggtggaa aacaaccgtg cagtgggtgc agttaccaaa atgggcttaa
      541 cgtttaaagc ccgtgcggta gttttaaccg ctggtacgtt cttagcgggt aagatccaca
      601 ttgggttgga taactatgca ggtggtcgtg ccggcgatcc tgctgcaaca atgttggcag
      661 atcgtctgcg tgatctgaat ttgcgtgttg atcgccttaa aacaggtaca ccacctcgcc
      721 tcgatgcccg taccatcaac tttgacgtac ttgccaaaca gcacggcgat gaggtgttac
      781 ctgtcttctc ttttatgggc gatgtctcac agcacccacg ccaaattccg tgctacatca
      841 cccacactaa cgatcaaacc cacgatttaa ttcgcaacag tcttgatcgc agcccgatgt
      901 acaccggtat tatcgaaggg gttggtccac gttactgccc gtctattgaa gataaagtaa
      961 tgcgttttgc cgatcgtaat agccaccaga tctaccttga accggaaggc ttaaatacga
     1021 ttgaggttta cccgaacggg atctccacca gcttgccgtt tgatgtgcaa atggggatcg
     1081 tcaactcaat gaaaggcttg gaaaacaccc gcatcatcaa accgggctat gcgattgagt
     1141 acgactactt cgacccgcgt gatttaaaac caacccttga aaccaaagcg attgacggtt
     1201 tattctttgc cggacaaatt aacggcacga ccggttacga agaggcaggt gcgcaaggtt
     1261 tgctggcagg gattaacgca gcgttacagg ttcaaggtaa agaggcgtgg tatccaaccc
     1321 gtgatcaagc ctacaccggc gtgttggtgg acgacctctg tacattaggc accaaagagc
     1381 cataccgtgt gtttacctct cgtgccgaat accgtctgtt gctgcgtgaa gacaatgcgg
     1441 acattcgttt aacaccaaaa gcccacgaac taggattaat tgacgaggca cgttgggtgc
     1501 gtttcaacca aaaaatggaa gcgattgagc aagaaagagc tcgtttgaaa tccacttggg
     1561 cacatttgca aatgccaaat ctggacgaat tgaacgcgtt attggctaat cctttagccc
     1621 gtgaagcaag cggtgaagac ttaatccgcc gtcctgaaat gagttacgaa aagctgaccc
     1681 aaatcgccct atttgcccct gctattgaag acaagcaagt ggcagaacag gtggaaattg
     1741 cgatcaaata tcagggctat attgagcatc aatacaacga aatcgaacgc cataaacgcc
     1801 acgaaaacac cctgattccg gtagagtttg actacgacaa agtcgaaagc ctctccaacg
     1861 aagtgcgagc taaattgatg caacaccgcc ctgtctctat cgggcaggca agccgcattt
     1921 ccggcatcac accggcagcg atttccattc tgttggtgaa tttgaagaag caaggaatgt
     1981 tgaaacgggg tgagctgtaa atactacaag cggttggttt tgcagaaatt tttgcaaaat
     2041 tgaccgcttg tattctttgg agaaggaaat acccgaacta ccgccgtatt tttaatgata
     2101 tatctgcgta aactcggttt ttcgccgttc gatcaccaaa tgtttgccca accttcgtgg
     2161 tatttctgca atgcacttgt tcataccaat tatgaaaatc tgcgacaagg tgtatttgtg
     2221 actaaagcgt atttagtgat gtttcttgaa aatttattgt ttgaaaaaag tcattcgtta
     2281 agtaatcggg cattgcgtat taatgaaaat aatgattaag gaatttgcaa aatgttagct
     2341 aaattaaacc gcttgcttgc tcaagccgaa ataaatttga ccgatcaaca aaaagagcag
     2401 ttagttggtt ttgtgagatt attggataaa tggaataagg cgtataacct cacttccgtt
     2461 cgcaaccctg atgaaatgtt ggttaaacat attttggaca gccttgttgt tagtcgtcat
     2521 ttacaaggcg aaacgtttat tgatgtcggc acggggccgg ggctaccggg cattccgctg
     2581 gcgattgcta accctgataa acagttcgtg ctactagaca gcttaggcaa acgcatcact
     2641 tttatcaaaa atgcgttgcg tgagcttggt attaaaaacg ttaccccagt gcaaagtcga
     2701 gtggaggaat acactgaaag ccagtttgac ggcgtattaa gccgagcctt tgcctcgctt
     2761 aatgatatga tcgactggtg ttatcattta ccgactgaaa acggtaaatt ttatgcatta
     2821 aaaggcgtgt atgatgagca ggaaataatt gaaatcaaac aaccgattca gctagtggaa
     2881 gtgattaagc ttgaagtacc tgagttggta ggagaacggc atttagtagt gttgaaaaag
     2941 ccctaataca ttggaagttt aatgatacaa gcggtcgaat ttgtaaattt ttttgcaaat
     3001 ctgcctgctt gtgttaacta tttttcataa agcatacctg gttaataagg tgtgcttttt
     3061 ttataaccta ttatttcatc tgatttattt ctattttgtg atgtgcttca caaaaacaaa
     3121 aaaacataat gtagtaaaaa atattcgtaa ttgaagccct tatttcttta cctgaaaata
     3181 agcgaactta attatataac gaggaggttc gtaatgaaca gggtaacaaa taaggcagat
     3241 gagtttgcta aactcagtac gtttgaacgt attgcttatg gtagtggcga cttagcccaa
     3301 aatttagttt ttggtacagt tggtggtttc ttactcactt acttaactac tgtaaacggc
     3361 atttctgccg tagcaggagc aacgattttc ttaattgtaa aatggggaaa tgtgttttgg
     3421 gatccgtttg tcggtgcctt tattgacaaa agcaagccct cagcacaggg taaataccgc
     3481 ccgtatttac tgaaatttgg gattcctctt gtggttttag cttcactact atttcttcct
     3541 cttgaatcag tacgtggctc agtgatttat gctttccttt cttattttgc cactgcgatg
     3601 gtttattctt ttgttaatat tccttatggc tcgctttctg cttctcttac tcgagacaca
     3661 gacgaaattg ctaaattaac cacaacccgt atgacaatgg caaatatcgc taatttgttt
     3721 gtttatacct tattcccact ttttgtgcag ttacttgcac cacatgccga attaaaaaac
     3781 accggctttt tcggtattga gctctattta ggtgattata tgtctgctgc tgcaggccct
     3841 gcttggttta aggtttatgc ggtctatatg gtaattggat ttgtggcgtt aatgctctct
     3901 tattttggta ctaaagagcg gattattcca acagcggaag aaacagataa agtcaagtat
     3961 tcagatttag ttaatgaact caaacgcaat cgtccattac agattttagg gttattcttc
     4021 ttaataggtt ttacttttat gttcttcgga aatacggtgt ggccttttta cctaaaatat
     4081 aatattgggc attctgagtg gattgcctcc gtcggtttat taggctctat ccctgggatt
     4141 ttccttgtat tcttatggcc gaaactacgt cgcactatcg gtaaaaagaa ctttttctat
     4201 ctatttttag ggattttcgt tctagggcaa ctttgtctat gggtatggca atttgactcc
     4261 ttcaaatact ctccaacctt aggctatatc ggtcgtttct tacaacaatg gggattaact
     4321 tctgctaccg gttttatgtg ggcgttagtg cctgaggttg ttacctttgg agagtttaag
     4381 tcgaaaaaac gtgtagcagg tattattaat gcgttaatgg gcttgttctt taaaatcggc
     4441 ttggcgttag gcggtattat tccgggttat attaatgcgg tttatggttt taacggctcg
     4501 cttttggctc aaaccgaaga ggctttattt ggtatcaatc tttcaatgat ttgggctcca
     4561 attattttag cgattattgc aggatttgtg atgagtcgct atccgttaag cgatactgat
     4621 attgatcata tcaacgaaaa aattactgct tattccaaat aatttgagta taggagaata
     4681 gattatgcaa attcaaaatc cagttttacc cggtttcaat ccagatccat ctattgtgcg
     4741 tgtgggtgat acttactaca ttgcaacttc tacttttgaa tggtttccgg gagtgagaat
     4801 tcacgaatcg aaagatttag tgcattggaa tttagttaaa aatgtcttag atacaaccac
     4861 gttgttagat atgcgaggca atccctcttc aggtggtatc tgggctcctg atctttctta
     4921 tgcggaaggt aaattttggt tggtttatac cgatgtaaaa attacagacg gtgcattcaa
     4981 agatatgact aactatctaa ctactgccaa agaaattcaa ggtccttggt cagctccgat
     5041 taaattgaat ggtattgggt ttgatgcttc gttgtttcac gatgatgatg ggcgaaaata
     5101 tttagtgcaa cagacttggg atcaccgtga atatcatcac ccctttgacg gtattacgtt
     5161 aacggaattt gatgttgcca caatgaaact caaacctgaa acccagcgta cgatttttga
     5221 aggtacagaa gtgaaattgg tggaaggtcc acatatttat aaaattaatg gcgaatatta
     5281 tctgtttgcg gcggaaggcg gcacagtatt tacgcatcaa gaagtagtgg ctcgttctaa
     5341 aacattggag gctcactctt tccaactggc tccaaataca ccgtttatta ctaattttga
     5401 tacacctaat tcttacctac aaaaacaagg gcacggttca ttagttgata ccccaagtgg
     5461 tgaatggtat tacgcttccc tcacagcaag accttggaat catgcaacag aatccgcaac
     5521 cgatcctcgt ggttggtcaa cattagggcg tgaagccgcc attcaaaaag tagaatttga
     5581 tcaagacggc tggccttata ttgtgggtgg acacggtgga aaaacctttg tagaagcccc
     5641 aaaagatgca atttttaccg aagctcctat tgatcattct caacacgatg agtttgatag
     5701 ctcaacgtta gatattaact ggaacactta agagtgcctt ttagtaaaga gatgggcgaa
     5761 gttggtaatg gtgttttaaa attgattggg cgaggctctc ttgcaaatac acacgattta
     5821 tcgctaatcg cacgccgttg gcaagccttc tattttgatg cggaaaccaa agtgaaattt
     5881 acaccgtttt cttatcaatc tatggcaggt ttaactaact attacaatca ctcacactgg
     5941 tcttggattt tcatcaccaa aaatgatcaa ggacaacagg tgattgaagt tgcagaaaat
     6001 aaaggtggac tcagaaatgg gcaatatact tcttacctta aagataaagc aattgtcatt
     6061 cctgatggaa cggagtatgt ttggtttaag actaaagttc ggaaagaaac ttaccgttat
     6121 gaatattcat tcgatggcaa acaatggcac actattccgg ttgaattaga tgcggcagtg
     6181 ctttcagatg attatgtgtt acgcagttat ggcggtttct tcacaggagc ttttgtcggg
     6241 ctggctgcag tggattactc cagttatgaa tctacagcag aatttagcta ctttgactat
     6301 aaagagttag gcgataagca acttacagac ggctcattct cttgggaaaa atctgaaagt
     6361 tgctttggct aaaatgagga gaatatcaca atgaaacaac gcagatttgg taaaaccaac
     6421 aaaatggtgt cagaaattgg gttaggcact tggcagcttg ggacgaaatg gggtgaaccg
     6481 ttcaatcatc aagaggcgat ggcaatttta gaaaccgctt atgagcaagg catcaatttt
     6541 attgataccg ctgatgtgta taacaacggg caaagcgaga aagccattgg tgatattttg
     6601 aaaaaatacc ctgacttttt ctatgtcgtt accaaatgtg gacgtgcgtt aaacccgcat
     6661 actgctgaaa tgtacacgcc acaggcaatc gaaaaatttg ttgatggtag tttaagccat
     6721 cttggcacgg aaaagttgga tatgattttg ctccactgcc cgccaacgtt ggtttatcgc
     6781 aatgatgaga tttttacgaa attggaacag cttaaagccg gcggaaaatt aatagactac
     6841 ggtgtgagta tcgaaacggc agaggaaggc ttgttggcaa tggagtatga cattgcggca
     6901 atggaagtta tcttcaatat gttccgctta aaaccattgg agcaactctt cccaaccgct
     6961 cagcaaaaaa atgtgggtat tatcgcccgt gtactgttgg caagtggttt gcttacaggc
     7021 agatataatg cctgcaccca atttggcaaa gacgaccacc gcacatttaa ccgcaatggt
     7081 gaagccttcg ataaaggcga aaccttttcg ggtgtggatt atcaactcgg tttacaagcg
     7141 gtggaagaat tgaaagccct attcggcacg gaagatttaa ttccttacgc cctacgttgg
     7201 gtattgatga atgaagctgt gagtacagta atcccgggag caagtaaggt ttcacaagta
     7261 attactaacg cagcggtgga taatttccct ccactcactg aaaatgaaat gcaaaaagtg
     7321 gaagatattt acaaccgctt aattcgccca agtgtgcatc atttgtggta atttatccaa
     7381 cgctataaaa aatggaactc taacttgagt tccatttttg tcaattttag ccttaaacct
     7441 ctaactgttt agaggttttc ttaaacagag tcaatgcaat aaacgcaaag gctaagaaac
     7501 aggaaaggat cagggcatag aaaccaccgt cccagccgaa catatcaacc agtttaccca
     7561 tcacataacc tgcacttgca gagcctaaca agtagccgaa taaaccggtt aaacctgttg
     7621 ctgtaccggt ggcaacacga ggcactaaat ccgctgcttg taaaccgatc atcatcaccg
     7681 gcccgtagat taagaaacca atcgccacta agcagatgtt gtcgattaac gggttgccgg
     7741 ctgggttttt ccagtacacc acaatcgcaa ttaacacacc agcaaggaat aacaacatcg
     7801 gcggcgcacg gtgacctttg aatactttgt cgcttaaata accgcttgca agcataccga
     7861 agataccggc atattcatac aagaagtacg cccagctctg tttatccaca gagaaatgtt
     7921 tcacttcttt taagtaagtc ggtgcccagt cgataatgcc gtagcgaatg aaatagacaa
     7981 acacgttggc aatcgcaatt gcccacagga atttgttgtt taaaatatat ttgtagaaaa
     8041 tgtctttgga agagagtgtg tgggcagact ccactttttc caccactttc tcgcctttgt
     8101 actcatcaat cggcggtaag ccttgagatt ccggcgtatc acgcatcaaa tagaacatca
     8161 caaacgccag tacaatcgca atcaacgccg gcagatagaa cagggattgc cacacgccaa
     8221 aaatagataa gcctaaaatc gccaacggcc cgattaaacc gccgcccaag ttgtgcgaca
     8281 cgttccacca gctccaccac acgccacgtt cagaggttga gaaccagttg gtcatcgttt
     8341 tcgcccccgg cggatagccc attccttgga accagccgtt taacgccgcc aaaatgatca
     8401 taattggaat agacgaaagc acgcccggta ctaaaccgaa caccagactc acaatcgctg
     8461 aaccgagcaa gccgatagtg ataaagtatt tcgggttaga acggtcggaa acgttaccca
     8521 taataaattt actgaagccg taagcgagtg ataatgccac gcccaccgta cctaagtctg
     8581 ctttggtgaa gccatattca tcaatcaaat acggcattgc caacgagaag tttttacgaa
     8641 ttaaataata tgccgcatag ccgataaaga cgcctgcaaa cacttgccaa cgtaatttgc
     8701 gatattccgc atcaactctg ctggcttcca ctttttgttc tgctggtgga gaggctttta
     8761 gaaaggaaaa cattttacta ctcctttaag aatgaaatcc tatggctact ataatctttc
     8821 atttggagca gaaaaagtgg atttttgaaa atttgtgagc aagattaaaa ttattttgag
     8881 cgaaaacgaa aagcggttga atttccttct ttttttgcaa aaaatttgag aaatctaacc
     8941 gcttgtttca cttaaaaatc agctatttct gctttttcaa aaattccacg cccgtatcag
     9001 ggaagtcagt aaagacgcct gttgcacccg ctttattcag cagggcatcg tacatttcat
     9061 cgacattttg gaaaaagtcc ggcagagcat ctttgcgcac ggtgtatggg tgaagttcca
     9121 ttttgtactt cgccaactct ttcactaatg gcgtgtaaac aatgttgccg actttagatt
     9181 tttctttatc caccaacata taccagcccg ggccgacacc atcggcatat tttgccactt
     9241 ctgccatcgc accgtctttg aacatccagt cgtagtcgta attaacccag ttgccgtttt
     9301 tatctttctc ttcggtttcg tgccaatcgg tgtaggcaac taactgcacc aattttacgt
     9361 ccatacccag tttcggtagt aattcggttt tgatccgttt cagctcgttg aaatcgaagg
     9421 tttgcaggta aattggtgag gttttgctgt cgtagccata ttttttcaac actttcaggg
     9481 tttcgagtgc aatgtcttta ccctctttat ggtgcaacca aggggcttta atttcaggat
     9541 agatcccaat ttttttgccg gttgatttct ctaatccttg aataaattcc agctcttctt
     9601 ccaaagtgtg aatggtgaaa tgggactgcc acatcgggaa gcggttcggg taaacttgtg
     9661 cctgcttgcc gtctttcacc tcaaaattct cggtcatttc aagggtttta atctcatcaa
     9721 gggtgaaatc caccacataa taacgaccgt ctgctcgttt acgctcaggg aattttttcg
     9781 ccacatcagt taaaccgtct aaaaagtggt cgtgaatcac aatcaggcgg ttatctttgg
     9841 tcatagcaag atcttgctct aaatagtccg cttgttgccc gaatgctaga gctttagatt
     9901 caagcgtatg ctcaggtaaa taaccgcttg caccacggtg ggcaatcact aatttatcag
     9961 attgttgtgc ataggcaccc aatgctgtcg cggacaatgc taatgcagca accaatgttt
    10021 tgaatttaaa tttcatagaa ttacctcata taatgtaaaa ataaaaggaa gaacaaaaat
    10081 gtccttcctt ttgataagtt atttattatt taccatagtg atcttctaat tttgctttgt
    10141 gcttgccttc ttcaaccatc acaatgaagg ttaagagaat ggctaataca ccaccaccga
    10201 tcatcacgta gaaaccgccg tcccagccaa atttatctgc tgcccagcca actactgcag
    10261 aggctgccac tgtaccacct aagtaaccga ataaaccggt gaaacctgct gctgtacctg
    10321 ctgctttttt cggtgcaagt tcaagggcgt gtaagccaat caacattacc gggccgtaga
    10381 ttaagaaacc gatagtggtc atccaaatga agtccattaa ttgatatggg ttttcatacc
    10441 aagcatggcc tgcatattgt gcaatttcag attccggtgt cgcagggttg agccagaacg
    10501 caaccactgc tgcggtggta agaatcataa agatgaaacc ggttaaacca cgtttgcctt
    10561 tgaacagttt gtcagagacc caaccacaga gtaatgtacc tggaatcgca gctaattcat
    10621 aaatggtata tgcccatgct gtacctttaa tgttgaagtg ttttacttcg cctaagtaca
    10681 ccggcgacca tttcaatacg ccatagcgga ttaagtaaac gaagacattc gcaatggcaa
    10741 tgtaccataa cagtttgttt ttcagcacat aagtcacgaa aatctctttg gtgcttaaat
    10801 cgtgttcata ggttttttcg ttatagtcgt cagggtagtc gttacgccat ttttcaactg
    10861 gcggtaaacc gcaagattgt ggagtatctt tcatcacaag gtagattgga atagctgcga
    10921 tcattgctgc aattcccggg aaataaaggg cttgttgcca tacatctttt gccgttgctt
    10981 ctacaccata ctcactgaaa tagagcgcac ttgctaatag caccatcgcc cccggcacca
    11041 taccgcctaa gttgtgagcg gtattccaga tagaaacgat agtaccacgc tcagatttag
    11101 accaccagtg aaccattgtt cgtccacacg gtggccaacc cataccttga aaccagccgt
    11161 ttaagaagat cattacccac attactaaaa tgcttgatgt tgcccaaggc attaagccca
    11221 taagggtcat acatagacct gaaagtaaca atccggtcgg taaaaatact ttcgggttag
    11281 agcggtcgga cattcctgcc atcacgaatt ttgataaacc gtaggccagg ccggcagctg
    11341 taccaatcac accgagatcg gtttttgtat acataccagc ttcaatcaag cctttttgtg
    11401 ctaagtcgaa gtttgcacgc acaaaatagt aagcggcata gccgaagaaa attcctgcaa
    11461 acacttgcca acgcaagaat ttatatcttg catcgacttt gtccgccggt aattccgcaa
    11521 tgtgcggagc gggtttaaat ggaccaaaca tagtattctc caatattact tagtaaaacc
    11581 tctgagtaat tcctttttag
//
LOCUS       DANLVT010000074        11426 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.074, whole genome shotgun sequence.
ACCESSION   DANLVT010000074 DANLVT010000000
VERSION     DANLVT010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11426)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11426)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11426
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.074"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(145..492)
                     /gene="frdD"
                     /locus_tag="PXC99_001687"
     CDS             complement(145..492)
                     /gene="frdD"
                     /locus_tag="PXC99_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdD"
                     /protein_id="HDL5418126.1"
                     /translation="MSLDQNPKRSNEPPVWLLFSAGGMVSALFFPVVIFIIGLLLPFG
                     LVSPDNIISFAHTWIGKLAIMVLAIFPMWAGMHRIHHGLHDLKVHTPAGNVIFYGLSI
                     LYTILVIIAVVQI"
     gene            complement(506..898)
                     /gene="frdC"
                     /locus_tag="PXC99_001688"
     CDS             complement(506..898)
                     /gene="frdC"
                     /locus_tag="PXC99_001688"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdC"
                     /protein_id="HDL5418127.1"
                     /translation="MSATKRRPYVRGMKASWWKKLDFYKMYMVREATCLPTVWFCIVL
                     FYGAVALSKGTFTTDFVDFLQNPLVVILNIISLAAMLYHAATLFVMTPAVMSVMVKGK
                     HLPVSVGRNILWAATGVISVIALILVYI"
     gene            complement(908..1639)
                     /locus_tag="PXC99_001689"
     CDS             complement(908..1639)
                     /locus_tag="PXC99_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005639269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HDL5418128.1"
                     /translation="MANLDKMTIEVLRYNPESDSEPHLDRYEVPYDSQTSLLDALGFI
                     KDELEPELSYRWSCRMAICGSCGMMVNGKPKLACKTFLRDYSGFMRIEPLANFPIERD
                     LVVDLSHFIDSIEAIKPYIIDNKAPEGQRTKQTPAQLEKYRQFSMCINCGLCYAACPQ
                     FGLNPEFIGPAAITLAHRYNLDNRDNGREERMKLLSSKNGVWSCTFVGYCSEVCPKHV
                     GPASAVNQGKLESAKDYVISMIKPR"
     gene            complement(1655..3457)
                     /gene="frdA"
                     /locus_tag="PXC99_001690"
     CDS             complement(1655..3457)
                     /gene="frdA"
                     /locus_tag="PXC99_001690"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase (quinol) flavoprotein
                     subunit"
                     /protein_id="HDL5418129.1"
                     /translation="MQSVNFDVAIIGAGGGGLRAAIAAAEANPNLKIALISKVYPMRS
                     HTVAAEGGSAAVIKDTDSFDNHFNDTVGGGDWLCEQDIVEYFVEHSPIEMTQLERWGC
                     PWSRREDGEVNVRRFGGMKIERTWFAADKTGFHILHTLFQTSIKYPNIVRFDEHFVLD
                     ILTDNGEARGCVAMNMMEGTLVQINANAVVIATGGGCRTYRFNTNGGIVTGDGLSMAY
                     RHGVALRDMEFVQYHPTGLPNTGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPIG
                     KPENKYMELGPRDKVSQAFWQEWRKGNTLKTAKGVDVVHLDLRHLGEKYLLERLPFIC
                     ELAKAYEGVDPAKAPIPVRPVVHYTMGGIEVDMNAETSIKGLFAVGECASSGLHGANR
                     LGSNSLAELVVFGKVAGENAARRALEVTARNQPQIDAQAKDVVARLHALANQEGNESW
                     SDIRNQMGDAMEEGCGIYRTQESMEATVNKIQELKERYKNISVKDKSSVFNTDLLYKI
                     ELGFILDVAQSIACSAVERKESRGAHQRLDYVERDDVNYLKHTQAYYNAEGTPTIKYS
                     DVKITKSQPAKRVYGAEAEAQEKVKKAAEAQAQQ"
     gene            3790..4773
                     /gene="epmA"
                     /locus_tag="PXC99_001691"
     CDS             3790..4773
                     /gene="epmA"
                     /locus_tag="PXC99_001691"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P--(R)-beta-lysine ligase"
                     /protein_id="HDL5418130.1"
                     /translation="MNNLQLDNIDWQPTASIPHLIQRSKIITEIRKFFTDRGLLEVET
                     PILSEFSVTDVHLSTFNTQFQSPFSPEAKTLHLMTSPEYHMKRLLAAGSGPIFQLCKV
                     FRNEEAGKRHNPEFTMLEWYRPHFDMYRLINEVDDLLQQILDCEPAESFSYQFVFQTY
                     VGLDPLSATKAQLVEKARKHGLQCDDDEQRDTLLQFLFSEVVEANIGQERPTAVYHFP
                     STQAALAQISSEDHRVAERFEFYYKGLELCNGFHELDDADEQIHRFEQDNLQREKMGL
                     EPQQLDVRFLAALKAGFPNCSGVALGVDRLLMLAMDAEKIEEVISFGIEKA"
     gene            4855..5745
                     /gene="rarD"
                     /locus_tag="PXC99_001692"
     CDS             4855..5745
                     /gene="rarD"
                     /locus_tag="PXC99_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL5418131.1"
                     /translation="MNISGKLQGWHYALLCYLTWGTFPIYWYPINQSGMPAEQILAQR
                     VLWSALFAVFLLLIFQQGRAVINAFKQPKVLGLFVLSSFMIGVNWLVYLWAIVNEHIL
                     DASLGYFINPIFNVFVGRLILKEQLNKAQLLALLFAISGILWLAIPAGQIPWVALILA
                     ASFCIYGLIRKLAPMEPLSGLALETLLMSPFAITYLCFCYHQNILVFSELNPLQMAVL
                     LCSGIATTLPLLWFAMGARRISMSLLGMLQYISPTLQFLCGVLIFNETLSAERAVGYI
                     LVWIGVGVFLLGMKKAGVKR"
     gene            complement(5756..6367)
                     /locus_tag="PXC99_001693"
     CDS             complement(5756..6367)
                     /locus_tag="PXC99_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5418132.1"
                     /translation="MKYEAKPLIISPNHIQQRLHGKLLARALLIIALLMLAKFIYIAS
                     LSNYFTFYLMEKFQLNIAMAQLSLFTFLGAVALGAFVGGPIGDKIGRNAVIWFSFLGM
                     APFALLLPHADLFWTIVCAIFAGFIMSSAFSAMVVYAQEAVPGRVGLISGTMFGLMFG
                     IGGLSAAVLGFFADEYGLESIFKACAYLPLLGFAALGLPKRNI"
     gene            complement(6395..6930)
                     /locus_tag="PXC99_001694"
                     /pseudo
     CDS             complement(6395..6930)
                     /locus_tag="PXC99_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251153.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            7122..9131
                     /locus_tag="PXC99_001695"
     CDS             7122..9131
                     /locus_tag="PXC99_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HDL5418133.1"
                     /translation="MDLIKKLNTGSTFRVPIFLPSLLFVSFVAVFCIIFPQQAQTSLD
                     TIKNSLFQHFSWFYIFAGSIFFLFLIFLSFSRLGDIKLGADTDEPEFGFGSWIAMLFA
                     AGMGIGLMYFGVAEPILHYLKPVQQNLTEPERMKEAMMTTFYHWGIHAWAIYGVIALA
                     LAYFGFRYKLALTIRSGFYPLLKHRISGFWGHLIDIIALCSTIFGLTTTLGFGVMQVS
                     AGFNNLGLIEQSNFTVLAIIVTVAMALAVLSAVSGVGKGVKILSEINLTLAGLLLIFV
                     IITGPTLLLFSSFTENLGYYFSSLLEMSFRTFAYEPEHQGWLSGWTVLYWAWWASWAP
                     FVGLFIAKISKGRTIREFILGVLFVPSLFNILWMTSFGSSAIWFDQQTAGALAEVSGN
                     TEQLLFTFFEQLPFGSIASFVAVIVISIFFITSADSGIFVLNSIASQGEENAPKWQSV
                     LWGALLAILALSLLYSGGLASLQTMTLIIALPFTFIMLILCIGLWKGLMVDNQYFNKK
                     FSQGSQHWAGKDWKQRLEKIINPSNKQDVRHFFIKVARPAFLELIEEFESYGLIAKMN
                     FTNEQNPKLEFEVVKENLRNFIYGIESVPRELSDLVVGDDNLPNIEQNTIYEPITYFL
                     DGRKGYDVQYMTKEELIADVLQQYERFINLAMDNSHDLMTADFNH"
     gene            complement(9196..9663)
                     /locus_tag="PXC99_001696"
     CDS             complement(9196..9663)
                     /locus_tag="PXC99_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HDL5418134.1"
                     /translation="MKSLKLKIPPPAWFLLCAALMWLVAQYVPVSLPNYQHTAIFFSG
                     LAVAIIGGAVAVSALWVIHQAKTTYSPFRPQHTAKLVTWGIYRKSRNPMYLSLLLGLI
                     AWALWLGAMLAWLVLPLFVWLITYFQIKPEEQILAQKFGTHYAKYCNQVRRWL"
     gene            complement(9665..11239)
                     /gene="murJ"
                     /locus_tag="PXC99_001697"
     CDS             complement(9665..11239)
                     /gene="murJ"
                     /locus_tag="PXC99_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HDL5418135.1"
                     /translation="MSKKLLRSGMIVSFMTLISRILGLIRDIVVATILGTGVSADIFL
                     FANRIPNFLRRLFAEGAFSKAFVPVLAEYNADNDPNKTREFIAKVSGTLGGLVTVVTL
                     VAMIASPVVAALFGTGWFLDWLYDGPNAEKFTQASFLLKITFPYLWFITFVALSGAVL
                     NTIGKFGVMAFSPVLLNVAIIAVALWGRDYFDSPDIALAWGVFLGGLLQFLFQIPFMK
                     KEGLLVKPKWAWKDEGVTKVRKLMIPALFGVSVTQLNLLLNQVIASFLITGSISWMYY
                     ADRLIEFPLGLFGIAISTVVLPSLSRIAKNKELTEIQRGEHFQNTMDWGVRMVLLLGI
                     PAMIGMAVLAQPIIMTMFMRGKFGFEDVLATSYPLWVMCLGLNSYMLISVLANGFYAN
                     QNTKTPVKVGIIAALSNICFGLAFAPFLGYIGLALASACSALVNVSLLYVNLSKNGYY
                     KVSHKTVLFVLKLFIAACVMGALVAYFTPEIELWALMTMWQKVYWLIWLMILAGGSYF
                     ASILVLGIRKKDFRSA"
BASE COUNT         3360 a         2550 c         2222 g         3294 t
ORIGIN      
        1 atcttttttg cagatattta atacaaaacg atcgttttat cggcaaaatt tctaatattt
       61 gcaaattttc ttataaattc gaccgcttgt tagcatatta aaaatgaaaa gaccatctgc
      121 tttatacaag atggtctttc tcatttaaat ctgcacgact gcgatgatta ctagaattgt
      181 gtataagata gacaatccgt agaaaatcac attacctgct ggcgtgtgaa ctttcaggtc
      241 gtgtaatcca tgatggatac ggtgcattcc tgcccacata gggaaaatcg ctaataccat
      301 aatagcgagc ttgccgatcc aagtatgggc aaaggaaatg atattatctg gtgatactaa
      361 cccgaatggc agtaataaac cgataataaa gattaccaca gggaaaaata atgcacttac
      421 cattccccca gcactaaaaa gcaaccatac cggcggttca tttgaacgtt ttgggttttg
      481 atcaagactc attttcttcc ccttcttaaa tataaaccaa gattaatgca attacgctaa
      541 ttacgcctgt tgctgcccaa agaatatttc ttccaaccga gactggtaag tgtttacctt
      601 taaccatcac ggacatgacg gcaggtgtca tcacaaaaag tgttgccgca tgatataaca
      661 ttgctgccaa tgaaattatg tttaggataa caactaacgg attttgtaag aaatccacaa
      721 aatcggtagt aaatgttcct ttacttaacg caactgctcc ataaaataat acaatgcaga
      781 accaaacagt tggaagacag gtagcttcac gcaccatata cattttatag aagtcgagtt
      841 ttttccacca gctggctttc attcccctta cataaggtct acgttttgtt gctgacattt
      901 cttcctccta tctcggtttg atcattgaga taacataatc tttcgcactt tcaagtttac
      961 cttggtttac agccgaagca gggccgacgt gtttcggaca gacttccgag cagtaaccca
     1021 cgaaagtaca gctccaaaca ccgtttttgc tgctgagtag cttcatacgc tcttcacgac
     1081 cattatcacg gttatccaag ttatagcggt gagccaatgt aatcgcagca ggtccgataa
     1141 attcagggtt caaaccaaat tgtgggcaag ccgcataaca taaaccgcag ttgatacaca
     1201 ttgagaattg acgatatttc tctaattgtg ccggcgtttg tttagtacgc tgtccttccg
     1261 gtgctttatt atcaataata taaggtttaa ttgcctcgat gctatcaata aagtggctta
     1321 aatccactac taagtcacgc tcaatcggga agttcgccag cggctcaatt cgcataaaac
     1381 cgctgtaatc acgcaggaat gttttacaag ctaacttcgg cttaccgttt accatcattc
     1441 cgcaagaacc acaaatcgcc atacggcaag accagcgata agaaagttcc ggttctaatt
     1501 cgtctttaat gaagcccaat gcatctaaaa gtgaagtttg gctgtcatac ggcacttcat
     1561 atctgtctaa atgtggctcg ctatctgatt cagggttgta gcgtagcact tcgatggtca
     1621 ttttatctaa atttgccatt ttactactcc ttctctattg ttgtgcttga gcttctgctg
     1681 cttttttgac tttttcttgg gcttcagcct ctgcaccata cacacgttta gccggttgtg
     1741 atttagtgat tttcacatcg ctgtatttaa tcgtcggtgt accctctgca ttgtagtacg
     1801 cttgtgtgtg ttttaagtag ttcacatcat cacgctcaac atagtctaaa cgttggtgag
     1861 ccccacgaga ttctttacgc tctaccgcag agcaagcaat ggattgagcc acatctaaaa
     1921 tgaagcctaa ttcaattttg tagagtaaat cagtgttaaa cacacttgat ttatctttta
     1981 cgctgatgtt tttataacgc tcttttagct cttggatttt gtttacagtc gcttccatac
     2041 tttcttgggt acggtaaata ccacaacctt cttccatcgc atcacccatt tggttacgga
     2101 tatccgacca agattcatta ccctcttggt tcgctaatgc gtgcaagcga gccaccacat
     2161 cttttgcttg tgcatcaatt tgtggctggt tgcgagcagt cacttctaac gcacggcgag
     2221 ccgcattttc accggcaact ttgccgaaca ccacaagctc tgctaatgag ttagaaccca
     2281 aacggttcgc accgtgcaag cctgatgaag cacattcacc tactgcgaat aagcctttaa
     2341 ttgaggtttc cgcattcata tccacttcaa taccacccat cgtgtagtga accaccgggc
     2401 gaacaggaat cggcgcttta gccggatcga ccccttcata ggctttcgct aattcacaaa
     2461 taaacggtaa acgctcaagt aaatattttt cacctaaatg gcgtaaatct aagtgaacta
     2521 cgtccacgcc ttttgcggtt tttaaggtgt tccctttacg ccattcttgc cagaatgctt
     2581 gtgaaacctt atcacgaggg cctaattcca tatatttgtt ttccggtttg ccgataggtg
     2641 tttccggtcc taaaccataa tcttgcaggt aacggtagcc atctttatta actaaaatac
     2701 caccttcacc acgacaacct tctgtcatca aaataccggt atttggcaaa cctgttgggt
     2761 gatattgtac gaactccata tcacgcaaag ccacaccgtg acgatacgcc attgataaac
     2821 cgtcgccggt tacaataccg ccgttagtgt taaagcgata agtacggcag ccgccaccgg
     2881 ttgcaatcac aactgcattt gcattgattt gaacaagtgt gccttccatc atattcattg
     2941 ccacacaacc acgagcttcg ccgttgtcgg tgagaatatc cagcacaaaa tgctcatcaa
     3001 aacgcacaat attcggatat ttaatcgaag tttggaacaa agtatgcaaa atgtggaaac
     3061 cggttttatc cgccgcaaac caagtacgct caattttcat tcctccaaaa cggcgaacat
     3121 tcacttcacc gtcttcacga cgactccaag ggcaacccca gcgttctaat tgtgtcattt
     3181 caatcggcga atgctctaca aaatactcca caatatcttg ctcacataac cagtcaccac
     3241 caccgacggt atcattaaag tgattgtcga aagagtcggt atctttaatt accgccgctg
     3301 aaccaccttc tgctgcaacc gtatggctac gcattgggta aacttttgaa attaaagcaa
     3361 tttttagatt tggatttgct tcagccgccg caatagcagc acgcaagcca ccaccaccgg
     3421 cacctataat cgcgacatca aaattaacac tttgcataat gcactccgaa agttaaataa
     3481 cttaattcat taaaaagtaa tcatattgtg ccactatttg agcaatgaga taacctattt
     3541 ttacaaattt gtaacataaa aaatgtaatt ttgtgatcta cctcaaaaaa ggtaataaag
     3601 cttcataaag gtattgagaa tggctcttaa ttggacagtg atagaaagaa aatttctaat
     3661 gtttaaaatg agaaaattta atttgttgca aaaaagttaa aaccctctct ttatttttct
     3721 tgatcggtaa ctagggcaac tcactttttt aggctaaaat agcctcacat tttcaagcgg
     3781 tcatttttta tgaacaattt acaactcgat aatattgatt ggcaaccaac agcctctatt
     3841 cctcacctga tccaacgttc aaaaatcatt acggaaatcc gcaagttctt taccgatcga
     3901 gggcttttag aggtagaaac cccgatttta agcgaatttt cggtgacaga cgttcatctt
     3961 tcgactttca atacgcagtt tcaatcgcct ttttcccctg aggcgaaaac actccatctg
     4021 atgaccagcc cggaatatca tatgaagcga ctacttgctg ctgggagtgg accgattttc
     4081 caactgtgta aagtatttcg caacgaggaa gccggtaagc gacacaaccc tgaatttacg
     4141 atgctggagt ggtatcgccc gcattttgat atgtatcgct taatcaatga agtggatgat
     4201 ttactgcaac aaattttgga ctgcgaaccg gcagaatcat tcagctatca atttgtgttc
     4261 caaacctatg tcggattaga tccgctttct gccaccaaag cacaacttgt ggaaaaagcc
     4321 cgaaaacacg gcttgcaatg tgatgatgat gaacagcgtg acaccttgtt acaattttta
     4381 ttcagcgagg ttgtcgaagc caatatcggg caagaaagac caactgccgt ttatcatttc
     4441 ccttccaccc aagcggcatt agctcaaatt agctcggaag atcaccgtgt tgccgaacgt
     4501 tttgagtttt actacaaagg cttggaactc tgtaacggct tccacgaatt agacgatgct
     4561 gatgagcaaa ttcatcgctt cgagcaagat aatctgcaac gtgaaaaaat ggggctggag
     4621 ccacagcaac tagatgtgcg ttttcttgcc gcactcaaag cgggttttcc aaactgctca
     4681 ggtgtcgccc ttggggttga taggctgtta atgctggcaa tggatgcgga aaaaattgaa
     4741 gaggttattt ctttcggcat tgaaaaagcc taatttttta tgccgttttg tgatttgcaa
     4801 tttgcaaaaa aatcgacaaa tatgaccgct tgtacactcg tttaggaaag caaaatgaat
     4861 atttcaggca aattacaggg ttggcactat gccctactgt gctacttaac ttggggaacc
     4921 tttccgattt attggtatcc gatcaaccaa tcgggaatgc ctgccgagca aattttggct
     4981 caacgggtgc tttggtctgc cctatttgct gtgtttctgc tgctgatttt ccaacaaggg
     5041 cgagcggtta ttaatgcctt taaacagcca aaggtactcg ggctgttcgt gctttcttct
     5101 tttatgattg gcgtgaactg gctggtttac ttatgggcaa tcgtcaatga gcatatttta
     5161 gatgccagtc taggttattt tatcaacccc attttcaacg tgtttgtcgg taggcttatt
     5221 ctaaaagagc agctgaataa agcccaatta ttggctctgc tgtttgcaat tagcggcatt
     5281 ttatggcttg ctattcctgc cggacaaatt ccgtgggtcg cattgattct agccgccagt
     5341 ttctgtattt acgggctgat tcgtaaactt gccccaatgg aacctttgtc tggtttggcg
     5401 ttagaaactt tgctgatgtc gccttttgcc atcacctatc tctgcttttg ttaccaccaa
     5461 aacattttgg tattcagtga actcaatcct ttacaaatgg cagtgctact ctgctccggc
     5521 attgccacta ccttaccatt gctatggttt gcaatgggtg caagacgcat ttcaatgtcg
     5581 ctactcggta tgctgcaata tatttcacct accctgcaat ttttatgcgg tgtgctgatt
     5641 tttaatgaga cactttccgc cgaacgtgct gtaggctaca ttctggtttg gattggggtg
     5701 ggggttttct tattgggtat gaaaaaagct ggtgtcaaac gctaaaaata aaacgttaaa
     5761 tatttcgttt tggtagccct aatgcagcaa aaccaagtag tggcaaatag gcacaggctt
     5821 taaaaatact ctccaagcca tattcatccg caaaaaaacc caatacggcg gcacttaagc
     5881 cgccaatacc aaacattaaa ccgaacattg tgccggaaat cagccctact ctgcctggta
     5941 cggcttcttg agcataaacc accatagcgg agaacgctga tgacataata aaaccggcaa
     6001 aaatcgcaca cacaatcgtc caaaagagat ctgcgtgagg caacaacaaa gcaaaaggtg
     6061 ccatacctaa gaaagagaac caaatcaccg catttcgtcc aatcttatcg ccaatcggcc
     6121 cgccgacaaa agcgcctaaa gcaactgcac ctaaaaaggt aaatagagag agctgtgcca
     6181 ttgctatatt gagttggaat ttttccatta aataaaaggt gaaatagtta ctgaggctcg
     6241 caatataaat aaatttcgct aacatcaata aagcgataat taataatgct ctggctaata
     6301 atttaccgtg taagcgttgt tgaatatggt ttggtgaaat aatgagcggt ttggcttcat
     6361 atttcaccca acggcttact ttatataaaa cccatcataa tgccaataat acaaatgcaa
     6421 caacccaaat caccgcactt tgccctaacg gcacaataaa taatgcaact aagagcggac
     6481 ctaacgccga tccactgttt ccacctactt ggaaaagcga ctgagctgta ccaaatttac
     6541 cgcccgatgc cattcgagcc acccgagagg cttcagggtg aaaaatggca gagcctatcc
     6601 ccattaacgc agcggctatc agtaacacgc caaaattcgg cgaaaaggca agtaaaatca
     6661 cggaaagaag cgtaatcagc atactgacgg gcaataaatt cggttttggg tatcggtata
     6721 aagcccaata cccggctgaa taatagatgc ggtaatttga taaatgagtg aaatcatacc
     6781 aatttgagca aaactcagtt ggtaattttc ttttagcatt ggatagatcg aaaccattac
     6841 tgcttgaact aaatcattca acaaatgaga aagggaaatc agcagtaaaa tgggcaaaac
     6901 cattttttga gcgttatgtt gtgtgtgcat tctttattcg ttttttataa atgaaaaata
     6961 ttctactcgc aaataatgaa tgtgcaagcg gtcaaatttc ccgatttttt taccaaaccc
     7021 attaggttgc aatattatta ccaatacgtc ttaaatttgt tatttttata tctttttgct
     7081 atattcaagc ctctaaccat tcaaaaatag aggaaatagc attggattta atcaaaaaat
     7141 taaacacagg aagtaccttt agggtaccga ttttcctacc gagtttactc tttgtcagct
     7201 ttgttgccgt tttctgtatc atctttccac agcaagcaca aacctcactt gataccatca
     7261 aaaatagtct cttccaacat tttagctggt tctatatttt tgcaggctct atctttttcc
     7321 tgtttctaat ttttctctct ttcagccgat tgggtgatat taaattaggg gcagataccg
     7381 atgagcctga atttggtttt ggctcttgga ttgcgatgtt attcgccgcc ggaatgggga
     7441 tcgggttaat gtattttggg gtagcagaac ctattttgca ttaccttaaa cccgtccaac
     7501 aaaatttaac tgagccggag cgtatgaaag aagcgatgat gacaacgttc tatcattggg
     7561 gtattcacgc ttgggcaatt tatggtgtga ttgccttagc tcttgcttat tttggcttca
     7621 gatataagtt agcactcact attcgttccg gattttatcc cttactaaaa catcgtattt
     7681 caggcttctg ggggcattta attgatatta ttgccctttg tagcacgatt ttcggtttaa
     7741 cgactacact tggctttggg gtgatgcagg tcagtgctgg ctttaacaat ctaggtttaa
     7801 ttgaacagag caattttact gttcttgcga ttatcgtaac agtagcaatg gctcttgccg
     7861 tgttatctgc cgtttcgggc gtaggcaaag gggttaaaat cttaagtgaa atcaatctca
     7921 cattagccgg attgctactt atttttgtga taatcaccgg cccaactcta ttacttttct
     7981 caagcttcac cgaaaattta ggctattatt ttagctcgct gcttgagatg agtttccgta
     8041 ccttcgctta tgaaccggaa catcaaggct ggctaagcgg ctggacggtc ctttattggg
     8101 catggtgggc atcttgggcg ccatttgttg gtttgtttat tgccaagatc tctaaaggca
     8161 gaaccattcg tgaatttatt ttaggggtgc tatttgttcc atcgctgttt aacattttat
     8221 ggatgaccag cttcggcagc tctgccattt ggttcgatca acaaactgcc ggtgctttag
     8281 ctgaagtcag cggcaatacc gaacaactgt tatttacctt ttttgagcaa ttaccgtttg
     8341 gctctattgc ctctttcgtt gccgtcattg ttatcagtat tttctttatc acctctgccg
     8401 actcggggat ttttgttctc aacagcattg cttcacaagg cgaagaaaat gcaccgaaat
     8461 ggcaaagcgt gctttgggga gcattattag ccatcttagc gttatcacta ctctattcgg
     8521 gtggcttggc ttctctgcaa acaatgacac tgattatcgc cttaccattt accttcatta
     8581 tgctgattct ctgtatcggc ttatggaaag gattaatggt agataaccaa tacttcaaca
     8641 aaaaattctc gcaaggtagc caacattggg cgggtaaaga ttggaaacaa cgcttggaga
     8701 aaatcatcaa cccaagcaat aagcaagatg tccgtcactt ctttattaaa gttgccagac
     8761 cagcattttt agaacttatc gaggaatttg aaagctatgg cttaatcgct aaaatgaatt
     8821 tcaccaacga acaaaacccg aaattagagt ttgaagtggt gaaagaaaat ttacgcaatt
     8881 tcatttacgg cattgaaagt gtgccacggg aattatcgga tttggtggta ggtgacgaca
     8941 acctaccgaa cattgagcaa aataccattt acgagccgat tacttatttc ttagacgggc
     9001 ggaaaggtta tgatgtgcaa tatatgacca aagaagagtt gattgccgac gtgctgcaac
     9061 agtatgaacg ctttatcaat ttagcgatgg acaactcgca cgacttaatg acggctgatt
     9121 tcaatcacta accccacaag cggtgagatt ttcggaaaaa tttgcaaatt tccaacaaaa
     9181 tctcaccgct tgcatttaaa gccaacgcct tacttggttg caatatttgg cataatgtgt
     9241 gccgaatttt tgggctaaaa tttgctcttc cggcttgatt tggaaatagg ttatcaacca
     9301 tacaaacagc ggtaaaacca gccacgccaa cattgccccc aaccataatg cccacgcaat
     9361 caaacctaat agtaacgaaa gatacattgg gtttcggctt ttgcggtaaa tgccccaagt
     9421 gaccaattta gcggtatgtt gtggtcgaaa aggactgtat gtcgttttcg cttggtgtat
     9481 gacccaaagt gccgagacgg caaccgctcc gccaattatc gccacagcta aaccgctaaa
     9541 aaatatggct gtatgctgat aattcggcaa gctcaccggc acatattgag ctaccagcca
     9601 cattaaagcg gcacaaagca agaaccaagc cggcggcggg attttcagtt ttaatgattt
     9661 cattttatgc cgagcggaaa tcttttttac gaatgcctaa taccaaaata gaggcaaaat
     9721 aactaccgcc ggctaagatc atcagccaaa tcagccaata cactttctgc cacattgtca
     9781 ttaatgccca aagttcaatc tcaggcgtga aataggcaac caacgccccc attacacaag
     9841 cggcgatgaa tagtttcaac acaaaaagca cggttttatg gcttacttta tagtaaccat
     9901 tttttgagag attcacatac agcaagctca cattcactaa tgccgaacac gcagaagcta
     9961 acgctaaacc aatgtatccc aaaaacggag caaacgccaa gccaaagcaa atattactta
    10021 aggcggcaat aatcccaact tttaccggtg ttttggtgtt ttggttggca taaaaaccgt
    10081 ttgccagcac gctaatcaac atatagctgt ttaaccccaa gcacattacc caaagtggat
    10141 aagaggttgc cagcacatct tcaaaaccaa atttaccccg cataaacatt gtcataataa
    10201 tcggctgagc cagcactgcc ataccgatca ttgccggaat gccgagcaac agcaccattc
    10261 tcacccccca atccattgtg ttttgaaagt gttctccacg ttggatttca gtgagttctt
    10321 tgtttttcgc aatacgggaa aggcttggca gcacgacggt ggaaatcgca attccaaata
    10381 aaccgagcgg aaattcaatt aagcggtcgg cataatacat ccaactaatc gagccggtaa
    10441 tcaaaaacga ggcaatcact tggtttagca gtaaatttag ctgggtaacg gaaacgccaa
    10501 ataaagccgg aatcattaat ttacggactt tagtgacacc ttcgtctttc cacgcccatt
    10561 ttggcttaac cagtaagccc tcttttttca taaatggaat ttggaataaa aattgcaata
    10621 agccgcctaa aaataccccc cacgctaagg caatatccgg ggaatcgaaa taatctctgc
    10681 cccataacgc taccgcgata atcgccacat tcagcaacac cggggaaaat gccatcaccc
    10741 caaacttacc gatggtattt aacaccgcac cggataacgc cacaaaggta ataaaccaca
    10801 aataagggaa agtgattttg agcaaaaaag aggcttgggt gaatttttcg gcatttggcc
    10861 cgtcgtaaag ccaatctaaa aaccaacctg taccaaaaag agcggcaacc acaggcgagg
    10921 caatcattgc cacaagggta acaacagtta ccaaacctcc taatgtaccc gatactttgg
    10981 caataaattc tctcgttttg tttggatcgt tatccgcatt atattccgcc aacaccggca
    11041 caaaggcttt agaaaatgcc ccttcggcaa acaaacggcg aagaaaattg ggaatacggt
    11101 tggcaaacag gaaaatatcg gcactcacgc ctgtgcctaa aatggttgcc accacaatgt
    11161 ctcgaatcaa accgagtatg cgagaaatta aggtcataaa gcttacgatc attcctgatc
    11221 ttaaaagttt tttgctcata ataaagagta atattagtaa aattattgaa aaatcagacc
    11281 gcttgtagtc tgatcctaaa aatcgatcat aattttagca gtttgttata ggaaaatcag
    11341 aaaaaaactg ttaaaatctc gccctatcgt tttctatcag aaaaacggtg ttattttcaa
    11401 gcacgtgtct cgttgaaaat gaatta
//
LOCUS       DANLVT010000075        11395 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.075, whole genome shotgun sequence.
ACCESSION   DANLVT010000075 DANLVT010000000
VERSION     DANLVT010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11395)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11395)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11395
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.075"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..2963
                     /gene="mscK"
                     /locus_tag="PXC99_001698"
     CDS             <1..2963
                     /gene="mscK"
                     /locus_tag="PXC99_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="mechanosensitive channel MscK"
                     /protein_id="HDL5418136.1"
                     /translation="LVAQNTAPDKAQTALTEMVKRKQEISSQLSATNIKNELQTKLEV
                     ELELIELKNTYNQILLGGSEDLSALYSAQLDEKKQEQQNLQAEIANLQTAINNKIVEE
                     SQNKLDQAQAVQNQQNNATTNPVILRELDINTKVTQELLKQTKDMTQLSQDNLRIKSV
                     LDNLQQTQRNIEEQISSLQGTLVLSRIINKQKQSLPQDEMISGLSKQIADLRVRVFDI
                     TEFKDSFADINAYISRIEQDEKTTFTSKEKEQLSKILQERSDTLTEMIKSLNNQLNLL
                     INIELNQQQVQTISDALQQKLQQQSFWVKSNNPIDLEWFSKFVDITHYQFIDIGKKLN
                     FSNWRDNLLPASILVGILLLLAIFINRQKDKIKQKLHQINNRLKIVATDSQWNTPLAI
                     FWTLVLCLPSTLMFLAGFVAITYISFENPQEVWTWGLKMAIYWLYFAFLVAMLRPHGI
                     GHIHFNMPQKSNEIFRNILKRSVWIIALLLNTSIFTNLEMGISYDMLGQTMTIFVLIL
                     MIWMIVPAFRQAISTYENVTTEEKKESKSILLTIVKLVLLLAPIILIILIALGYYYTA
                     LVIIEHLVDSYFAIITWIIIRNILYRAFSISSRRLAYRRLQEKREAAEAKTRAKAEQN
                     DENPDGVELPFELKEDSIAVSEVKNQMLKLTDFVLWIGLFVLLYWVWSDLITVALYLD
                     GVTLWQQSVTTEAGIVMESITLLNLLTAILIIVVMVVLIRNLSGLLEALIFSHFKLSQ
                     GTPYTITTLLTYLIIALGAIFAFGTLGMSWSKLQWLLTALSVGLGFGMQEIFANFVSG
                     IIILFERPMRIGDTITIGTYSGTVSKIRIRATTLVDFDGKEVIVPNKAFVTERLVNWA
                     LSSTATRIIVQVGVAYGSDLELVKRLLLQVAEENPKVLKDPQPRAYFLTFGASTLDHE
                     LRAYVNDLSDRNPTIDALNTRIHQLFNEHNIDIAFNQLDVYIKNNDTQDEIKVDSKRF
                     EFERPNNITAKEKE"
     gene            2966..4048
                     /gene="aroC"
                     /locus_tag="PXC99_001699"
     CDS             2966..4048
                     /gene="aroC"
                     /locus_tag="PXC99_001699"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HDL5418137.1"
                     /translation="MAGNSIGQLFKVTTFGESHGIALGCIVDGVPPNMALSEADLQPD
                     LDRRKPGTSRYTTPRREDDEVQILSGVFEGKTTGTSIGLIIKNGDQRSQDYGDIAEKF
                     RPGHADYTYQQKYGIRDYRGGGRSSARETAMRVAAGAIAKKYLREQFGIEVRGYLSQI
                     GNIKIDPKTVENIEQIDWHAVNSNPFFCPDPVAIEGFDALIRELKKEGDSVGAKLTVI
                     AERVPVGLGEPVFDRLDADLAHALMSINAVKAVEIGDGFAVVEQRGSQHRDEMTPQGF
                     LSNHAGGILGGISSGQPIIAHIALKPTSSITIPGRSVNKNNEAVEVITKGRHDPCVGI
                     RAVPIAEAMMAIVLLDHLLRFKAQCR"
     gene            4067..4894
                     /gene="mepA"
                     /locus_tag="PXC99_001700"
     CDS             4067..4894
                     /gene="mepA"
                     /locus_tag="PXC99_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-insensitive murein endopeptidase"
                     /protein_id="HDL5418138.1"
                     /translation="MKLLKTLLVSSLAFTATALNATQWEKIKTPVQGKAQSIGGYSNG
                     CIIGAQPLALKGEGYQVIRSARNRYYGHPQLLDYLTHLGKKTKAAGVPTILIGDMGMP
                     AGGRFASGHASHQTGLDADIWFKFGPMDDETARNPAGLATIMVNRSTERVDDSLWNQH
                     HTNLVKLAATDPRVDRIFVNPAIKVKLCQTAGNDRAWLRKIRPWYGHDSHFHVRLTCP
                     ADAASCENQALVPAGDGCGEELYSWFEPKEASGTPKAKVLPTAPVQCQMILSEQGLN"
     gene            4967..6886
                     /locus_tag="PXC99_001701"
     CDS             4967..6886
                     /locus_tag="PXC99_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HDL5418139.1"
                     /translation="MRLFVAEKPSLARAIADVLPKPHTKGDGFIQCGEHDTVTWCIGH
                     LLEQAEPDVYDERFKMWRMEHLPIVPEQWKLIPKKETLKQFKVVEKLIKKADVLVNAG
                     DPDREGQLLVDEVFGYLNLSAERKSQIQRCLVSDLNPNAVSRAIEKLQKNSDFIPLAT
                     SALARARADWLYGINMTRAYTLQGRWAGYKGVLSVGRVQTPVLGLIVRRDLEIEHFVP
                     KDYFEVLAQIVVPETQERFKAQWQPSKACEDYQDEDGRVLSRPLAENVVKRITDQPAT
                     VTEYQNKIEKETAPLPYSLSVLQMEAAGRYGLSAQAVLDICQKLYETHKLITYPRSDN
                     RYLPTEHFNDRFKVMAAIAHHLPEYQQKPEVIDATIRNRCWNDKEVEAHHAIIPTARQ
                     GTVHLTENEKRVYQLIARQYLMQFCPDAEYRKSKIGLEIAGGSFVAQARNLVIAGWRA
                     LLGKEDSLDDAEPLLPIVKKGQILHCEKGEIVSKKTQPPRHFTDRSLLSAMTGIARFV
                     QDKELKKILRETDGLGTEATRAGIIELLFKRGFLIRKGKNIHSTEAGRILIQALPDSA
                     TQPDMTAHWEMQLNQISKKETSYQQFMFDLNQQLPHLLQSPNRQVLQNLAKITPLASG
                     NKPRYFKKRTQTAEN"
     gene            6992..7318
                     /gene="secG"
                     /locus_tag="PXC99_001702"
     CDS             6992..7318
                     /gene="secG"
                     /locus_tag="PXC99_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HDL5418140.1"
                     /translation="MLINVLTIVYLVVAVLLIAFVLMQQGKGADAGASFGAGASATVF
                     GSAGSANFLSRTTALLATIFFAISLVIGNLSSHNVAPKSQFEDLSQVEQKQVEPVKIE
                     NSDIPQ"
     gene            7343..7428
                     /locus_tag="PXC99_001703"
     tRNA            7343..7428
                     /locus_tag="PXC99_001703"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7377..7379,aa:Leu,seq:gag)
     gene            7631..8872
                     /locus_tag="PXC99_001704"
     CDS             7631..8872
                     /locus_tag="PXC99_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5418141.1"
                     /translation="MARTTKALNKTQIENAKSKDKEYILSDGDGLNLRVKPLPKGSKI
                     WIFNYTNPQTKNRTNLTIGRYPLITLAEARTICDGYRSLIEKGIDPQEEKKRLQQEAE
                     NRVNDTFRNVAESYFNGIYKEKAKNPITREKNWIRLENHIFPYIGDKHVEEIKVKALV
                     DIYSKVADKSNTLKKLHQLVSAVMDHAITQGIIESHNCRLAVKNFYIKPSTPNPTIEL
                     EELPQLFTDLHNAKLSKQTYALVCWSFLTALRPNEAVNAEWKEIDFEKKLWNIPKEKM
                     KGKADKKRPHSVPLSSQALKILEMMKMHSNSSPFVFPGRSSNSKPMSNATVNSTLKRN
                     GYKDRLTAHGIRAFVKTFLSSRKVDRHVSESILSHLLEGGDDLENTYNRYDFLEERVP
                     VMQLLGDYCEQCGMNLELVRG"
     gene            complement(9031..10899)
                     /locus_tag="PXC99_001705"
     CDS             complement(9031..10899)
                     /locus_tag="PXC99_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HDL5418142.1"
                     /translation="MFKKLLELRQQKAAIEAEMRSILTKADEEKRSTTEAEGAKFDEL
                     RSQAENLVKEIARYEAITDEQRNQPGQQVETANVKVSDDELRHWIKTGELRSLATNTN
                     GGADGGYSVIPELDKQVMKRLTDDSVMRQIANVVKLTQGKEYKKLVSAGGAAVNHIGE
                     GEARTETATPKMNEVTIAVHNIYAYPKTTQEILDFGGVDILGWLTEEISESFVETEET
                     DLTNGTGTKQAKGFLAYPRTTANDKTRPFGTLQKMEVQPATVIGWNSKGQPETLTPYP
                     PYSVNVQRTVNRQNWLTAYIPHSYDENVAETPHFDQWLNFVSDGKQDKAKNILAALYA
                     ILTNRYNWQVFFQVTGKGGSGKSVFAGIATLLAGEKNTASARLENFDDERKIAGLEDK
                     KLIICSEQTKYAGDGGGLKAITGGDMVRVDPKNKHPFNARIAAMIMIVNNDPCKWTER
                     NGGIDRRIVNFRFNKRPPENERDPYFMDKITLEIGGIIRKVLDTFPDPLEAKRALEEQ
                     KESLEALEIKKQSDPLTDFFEYLYTTENTDGLYIGTGNTLGHDKIRTHLYPAYLAFVK
                     AKNVLELGLNTFVVGIEQAVKQHGNKHDFTKRKTNKGQRTNVHFKNFDDFQSDILN"
     gene            complement(10910..11305)
                     /locus_tag="PXC99_001706"
     CDS             complement(10910..11305)
                     /locus_tag="PXC99_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5418143.1"
                     /translation="MISNEAIRQEVIDLLQGNIQGIQHFHNGRAVFTDVENELPAIAV
                     FIDEAEYSQLTLCDGECNAYLKIGIYLPMFSTENDLDLVAQKISDVMNQATFHSMDEC
                     VLAKYSYDYDANESAWKTATLHYNINYLN"
BASE COUNT         3449 a         2381 c         2343 g         3222 t
ORIGIN      
        1 atttagttgc acaaaatacc gcaccggata aggctcaaac ggccttaacc gagatggtta
       61 aacgtaaaca ggaaattagt agccaacttt cagcgactaa cattaaaaat gaactacaga
      121 caaagttaga agtagaatta gaattaatag aattaaaaaa cacttacaat caaatattac
      181 ttggtggcag cgaggattta tctgcgcttt actctgctca attagatgaa aaaaagcaag
      241 agcagcaaaa tctacaagca gaaattgcaa acctgcagac tgctatcaac aataaaattg
      301 tagaagagtc tcagaacaag ctagatcaag cacaagcggt tcaaaatcag caaaataatg
      361 caacgacgaa cccagttatc ttgcgtgaat tggatataaa taccaaagtc acacaagagt
      421 tgctaaaaca gaccaaagat atgacgcagt tatcacaaga taatttgcga atcaaaagtg
      481 tgctagataa cttacagcaa acccaacgta atattgaaga acaaatcagt tctctgcaag
      541 gtacgttggt gctttctcgt attattaata agcaaaaaca atcattacca caagatgaaa
      601 tgatttccgg actatcaaaa caaattgcag atttacgtgt acgtgttttt gatatcactg
      661 aatttaaaga ctcttttgcg gacataaatg cttatatcag ccgcatagag caagatgaaa
      721 aaacaacctt tacgagtaaa gagaaagaac aactgagtaa aattttacag gaacgttctg
      781 acactttaac tgagatgatt aaatcattaa ataatcagct caatttatta atcaatattg
      841 aactaaacca gcaacaagtg cagaccatta gtgatgcgtt acagcaaaaa ctgcaacagc
      901 aaagcttctg ggttaaaagt aacaacccca ttgatcttga atggtttagt aaatttgtcg
      961 atattaccca ctatcaattt attgatattg gaaaaaaact caatttttca aattggcggg
     1021 ataatttatt acctgcaagt attttagtcg gaattttatt gctattagcc atctttatta
     1081 atcgccaaaa agataaaatt aaacaaaaat tacaccaaat taataatcga ctaaaaattg
     1141 tcgccacaga tagccaatgg aacacccctc ttgctatttt ttggacatta gtgctttgcc
     1201 tgccaagtac actaatgttc ttagccggat ttgttgctat cacttatatt tcatttgaaa
     1261 atcctcagga agtctggact tggggattaa aaatggcaat ttattggctg tattttgcct
     1321 ttttagtggc gatgctacgc ccgcacggca taggacatat tcactttaat atgccacaaa
     1381 aaagtaatga aatcttccgt aatattttaa aacgttcggt atggatcatt gctttattac
     1441 tgaacacctc tatttttaca aacttagaga tgggaatatc ttacgacatg cttggacaaa
     1501 caatgactat ttttgtcctt atattaatga tttggatgat tgtaccggca tttaggcaag
     1561 ctatttctac ctatgagaat gtcacaacag aagagaaaaa agaatctaaa agtattttac
     1621 tcactattgt caaattagtg ctactgcttg cccctatcat tcttatcatt ctgattgcat
     1681 tgggctatta ctatactgca ctggtgatca ttgagcattt agtagattct tattttgcga
     1741 tcattacttg gattattatt cgtaatattc tctatcgagc attctctatt tcatcacgcc
     1801 gtctggctta cagacgttta caagaaaaaa gagaagcagc tgaagccaaa acacgagcta
     1861 aagcagaaca aaatgatgaa aacccggacg gtgtcgagct tccttttgag ctaaaagaag
     1921 actctattgc cgtaagcgaa gtcaagaacc aaatgttgaa attaactgat tttgtgcttt
     1981 ggattggctt atttgtgctg ctttactggg tttggtcgga cttaattact gttgcactct
     2041 acctagacgg cgttacctta tggcaacaaa gtgttacaac agaagccggg attgtaatgg
     2101 aatccattac cctgctgaat ttactcactg ctattctgat tattgtggta atggtggtac
     2161 tcattcggaa cttatccggt ttacttgaag ccctgatttt ctcgcacttc aagttatcgc
     2221 aaggtacacc atacacaatt accacactct taacctattt gattattgcg ttaggggcaa
     2281 tctttgcgtt cggtacatta gggatgtctt ggagcaagct ccaatggcta ctaactgcac
     2341 tttctgtcgg tctgggtttt ggtatgcaag agatctttgc aaacttcgtt tcagggatta
     2401 tcatcttgtt tgaacgtcca atgcggattg gcgacaccat taccatcggc acttacagcg
     2461 gtacggtttc caaaattcgt attcgtgcca caaccttagt cgattttgac ggcaaagaag
     2521 tgattgtacc aaacaaagca ttcgtaaccg aacgcttggt gaactgggca ttaagcagca
     2581 ccgcaacccg cattattgtt caagtcggcg tggcttacgg gtctgattta gaattagtca
     2641 aacggctgtt attacaagtg gcggaagaaa atccgaaagt cttgaaagat ccacaaccaa
     2701 gggcttattt ccttaccttt ggtgcaagca ctttagatca cgaattaaga gcctatgtga
     2761 acgatttatc tgatcgtaac ccaactattg atgcactaaa tacacgcatc caccagctct
     2821 ttaatgaaca taatattgat attgcattta accaattaga tgtttatatc aaaaacaacg
     2881 atacacaaga tgaaattaaa gtagattcaa aacgctttga gtttgaacga ccaaataaca
     2941 taacagcaaa agaaaaggaa taacaatggc aggcaacagc atcggacaat tatttaaagt
     3001 gaccactttc ggcgaatctc acggtattgc attaggctgt atcgtagatg gcgtaccgcc
     3061 gaatatggct ttaagcgaag cagatttaca gccggattta gaccgccgta aacccggtac
     3121 ttcacgctac accacgcctc gccgtgaaga tgatgaagtg caaattttat cgggagtctt
     3181 tgaaggcaaa acgacgggaa caagcattgg tttaatcatt aaaaacggtg accaacgctc
     3241 acaagactat ggcgacattg ccgaaaaatt ccgcccgggg cacgcagatt atacctatca
     3301 gcaaaaatac ggcattcgag attaccgtgg cggtgggcgt tcttctgctc gggaaaccgc
     3361 aatgcgggtt gccgccgggg cgattgccaa aaaatatttg cgtgagcaat ttggcattga
     3421 agtgcgaggc tacctctcac aaatcggcaa tatcaaaatt gacccgaaaa ccgttgaaaa
     3481 tattgaacaa attgattggc acgcagtcaa tagtaatcct ttcttctgcc ccgatcccgt
     3541 tgcgattgaa ggctttgatg ccttaattcg tgagctgaaa aaagagggcg attcggtggg
     3601 ggcaaaatta accgtgattg cagagcgtgt acctgtaggg ttaggcgaac ctgtgtttga
     3661 ccgcctagat gccgaccttg cccacgcctt aatgtcgatc aacgccgtga aagcggtgga
     3721 aattggcgat ggttttgcag ttgtggaaca acgtggtagc cagcaccgag atgagatgac
     3781 gccgcaaggc tttctctcta atcacgccgg cggaatttta ggtggtatta gctccggtca
     3841 gccgattatc gctcatattg cgttaaagcc gacctcaagc attactattc ccggcagaag
     3901 cgtgaacaaa aacaacgaag ccgttgaagt gatcactaaa ggcagacacg acccctgtgt
     3961 aggtattcgt gctgtgccga ttgcagaagc gatgatggcg attgtactac tcgaccatct
     4021 gttaagattt aaggctcaat gccgttaaac acataaaatt ggaaaaatga aattattaaa
     4081 aacactttta gtctcaagcc ttgcttttac agctaccgca ctgaatgcaa cgcaatggga
     4141 gaaaatcaaa actccggttc aaggaaaagc acaatctatc ggcggttata gtaacggctg
     4201 tattattggg gcacagcccc ttgcattaaa aggcgaaggc taccaagtga tccgctcggc
     4261 tcgtaaccgc tattacggac acccacaact gctcgattat ctcactcact taggcaaaaa
     4321 aaccaaagct gccggtgtgc cgaccatttt aatcggcgat atgggaatgc ctgccggtgg
     4381 gcgttttgcc tccggtcacg cctcccatca aaccgggctg gatgctgata tttggtttaa
     4441 gttcggaccg atggacgatg aaaccgcccg caatccagca gggcttgcca ccattatggt
     4501 aaaccgtagt accgagcggg ttgatgattc actctggaat caacaccata ctaatttagt
     4561 aaaacttgct gcaaccgatc ctcgagtgga tcgcattttt gtcaatcctg ccattaaagt
     4621 gaaactctgc caaaccgcag gcaatgatcg tgcttggtta cgcaaaattc gcccgtggta
     4681 cggacacgac tcccatttcc acgtccgttt aacctgcccg gctgatgccg caagttgtga
     4741 aaatcaagcc cttgtgcctg ccggtgacgg ctgtggtgaa gagctttact cgtggtttga
     4801 gccgaaagaa gcctccggca caccaaaagc caaagtgcta cccacagcgc ctgttcaatg
     4861 tcagatgatt ttatctgaac aaggcttgaa ttaattgcaa aataacaacc ttttttgacc
     4921 gcttgtcagc ccacaagcgg ttcattttct taaataattt acgattatgc gtttatttgt
     4981 tgccgaaaaa cccagccttg cccgagcgat tgccgatgtg ttaccaaaac cccataccaa
     5041 aggagatggc tttatccaat gcggcgaaca cgacactgtt acttggtgta tcggtcattt
     5101 attggaacag gctgaacccg atgtctatga tgagcgtttc aaaatgtggc gaatggaaca
     5161 tttgccgatt gtgcctgaac aatggaaatt gattcccaaa aaagagacgc tcaagcagtt
     5221 taaagtggtg gaaaagctga ttaaaaaagc cgatgtttta gtcaatgccg gagacccgga
     5281 tcgagaaggg cagctgttgg tggacgaagt ttttggctat ttgaatttat ctgctgaacg
     5341 caaaagccaa attcagcgtt gtttggtaag cgatctcaac ccgaatgcgg tgagccgagc
     5401 cattgaaaaa ttgcaaaaaa acagcgattt tataccgctt gcaacctctg ctctcgcccg
     5461 agccagagcg gattggctgt atggtatcaa tatgacccga gcctataccc tacaggggcg
     5521 ttgggcaggc tataaaggcg tgttatcagt cggacgtgtg caaacgccgg tattagggct
     5581 gattgttcgc cgagatctgg agatcgagca tttcgtgcca aaggattatt ttgaggtgtt
     5641 ggcacagatt gtcgtgccgg aaacccaaga gcgatttaag gcgcagtggc aaccgagcaa
     5701 agcctgtgaa gattatcaag atgaagatgg gcgggtgctg tctcgtccat tggcagaaaa
     5761 tgtggtaaaa cggattaccg accagccggc aaccgtcacc gaatatcaaa ataaaattga
     5821 aaaagaaact gcaccgctgc cttattctct ttcggtatta caaatggaag ccgccggcag
     5881 atatgggcta tccgcccaag cggtgttgga tatttgccaa aagctgtatg aaacccataa
     5941 actaattacc taccctcgtt ctgataatcg gtatttgccg accgaacatt tcaacgacag
     6001 atttaaagtg atggcggcga ttgctcatca tttacctgaa tatcaacaaa aaccggaagt
     6061 gattgatgcc actattcgca atcgttgctg gaatgataaa gaggtggaag cccaccacgc
     6121 cattattccc actgcacggc aagggacggt acatttaacc gaaaatgaaa aaagagttta
     6181 tcaactcatt gcccgccaat atctaatgca attctgccct gatgcggaat atcgcaaaag
     6241 taaaatcggg cttgaaattg caggtggtag ttttgtcgct caagcacgca accttgtaat
     6301 tgccggctgg cgagcgttac tgggtaaaga agatagcctt gacgatgcag agccactact
     6361 accgattgtc aaaaaagggc aaatcctcca ttgtgaaaaa ggggaaattg tcagcaaaaa
     6421 aacacaaccg ccccgccact ttactgatcg cagtttgctt tcagcaatga ccgggatcgc
     6481 ccgttttgta caagataaag aattgaaaaa aatcttgcgt gaaaccgatg gtttaggcac
     6541 ggaggcaacc cgagccggta ttatcgaatt gctgtttaaa cgtggttttt taatccgtaa
     6601 agggaaaaat atccacagta ccgaagccgg cagaatattg attcaagcac ttcccgactc
     6661 tgctacccag ccggatatga ccgctcattg ggaaatgcag ctgaatcaaa tcagcaaaaa
     6721 agagaccagc tatcagcaat ttatgtttga tctaaaccaa cagctcccac atttattaca
     6781 aagcccaaac cgccaagtgt tgcaaaattt agcgaaaatc acaccgcttg caagcggcaa
     6841 taaacctcgt tattttaaaa agcgaacaca aactgctgaa aattaaatca agcaggtaaa
     6901 aattactgtt tagcacttgt caaacgggcg taaattctat attatgcacg ccattgcaaa
     6961 tttcgcataa agaatacaag agaataaatt aatgttaatt aatgtactca ctattgttta
     7021 tcttgtagtt gccgtattac tgatcgcatt tgtattaatg caacaaggta aaggcgctga
     7081 tgcaggtgct tctttcgggg cgggtgcttc agcaacagtt ttcggctcag caggatcagc
     7141 aaatttttta tcaagaacaa ctgctctact tgcaacgatt ttcttcgcaa ttagtttagt
     7201 tatcggtaat ttaagctcac acaatgtagc accgaaaagc caatttgaag acttaagcca
     7261 agttgaacaa aagcaagtag aacctgtaaa aatagaaaat agcgatatcc ctcaataatc
     7321 gcttaacatt aaaaagaata aagctctggt ggtggaattg gtagacacgc catcttgagg
     7381 gggtggtgga cacagtccgt gcgagttcaa gtctcgccca gagcaccatt caactaaatt
     7441 tggctcaacg gagctaaact aaaaaagcct tagaaagcct gtaaaatcaa catttacagg
     7501 cttttttact atcttaactc aacggctcta aacgtttcct atcacaaatt ttagttacac
     7561 gtttagttac acgttttaaa tcgtgttact atactttcaa taatcgtgta acacttcgta
     7621 ggtttaattt atggctagaa caactaaagc attaaataaa actcaaatag aaaatgccaa
     7681 atcaaaggat aaagaatata ttttatccga tggcgatgga ttaaatctta gagttaaacc
     7741 tctccctaaa ggctctaaaa tttggatttt taactacact aacccacaaa ctaaaaacag
     7801 aacaaattta actattgggc gttacccctt aattacactt gcggaagctc gcactatatg
     7861 tgatggctac cgctcgttaa tagagaaagg catagatcca caggaagaaa aaaagcggct
     7921 gcaacaagaa gcagaaaatc gagtaaatga tactttccgg aatgtggccg aaagctattt
     7981 caatggtatt tataaagaga aagcaaaaaa tccgattact cgtgaaaaga attggataag
     8041 gttagaaaat catattttcc cctatatcgg ggataaacac gttgaagaaa tcaaagtaaa
     8101 agcccttgtt gatatttatt ctaaagtggc agataaaagc aacacattaa aaaaactgca
     8161 tcagcttgta tctgctgtaa tggatcacgc cattacgcaa ggcattatag aaagccataa
     8221 ctgccgatta gcagttaaaa acttttatat caagccatct acgccaaatc ccactattga
     8281 gcttgaagaa ttaccgcagt tatttactga tttacataat gcgaagttat caaagcaaac
     8341 ttacgccctt gtttgttggt cgttcttgac tgctctacgc ccaaatgaag ccgttaatgc
     8401 tgaatggaaa gaaatagact ttgagaaaaa gctatggaat atccctaaag agaagatgaa
     8461 aggaaaagca gataaaaaac gccctcactc tgtgccgtta tcctcccaag cgttaaagat
     8521 attagagatg atgaaaatgc actctaattc tagccctttt gtttttccag gtcgttcatc
     8581 aaatagtaaa ccaatgagca acgcaacggt aaattcaaca ttaaaaagga atggatataa
     8641 agatagacta accgcacacg gtattcgggc atttgtgaaa acatttctat cttctcgcaa
     8701 agtagatcgc cacgtttccg aaagtatatt atcccattta ttagaaggtg gagatgattt
     8761 agaaaacaca tacaaccgat atgatttttt agaagagcgt gtgccagtaa tgcagctttt
     8821 aggtgattat tgcgaacagt gcggaatgaa tttagagtta gttcggggtt agggaggtaa
     8881 aatatatgat tttagtcgtc acgtcatcac ttttcccact ttccccttta aaatcaaata
     8941 gttaagtggt gatgactggt tttaaagtca tcattaagtc atcacaaaaa ggtgatgacc
     9001 tagaaaaaaa gaggggtttc cccctctttg ctaattcaaa atatcacttt gaaagtcatc
     9061 aaaatttttg aaatgaacgt ttgttcgttg ccctttattc gtctttcgtt ttgtgaaatc
     9121 gtgcttattg ccgtgttgct ttactgcttg ctcaatacct actacaaaag tatttaagcc
     9181 tagttctagc acattcttag ccttaacaaa ggctaaatat gccggataaa ggtgcgttct
     9241 tattttgtcg tgtccaagcg tgttgccagt tccgatataa agcccgtctg tattttctgt
     9301 tgtatataga tactcgaaaa aatccgttaa tgggtcagac tgctttttaa tctccaacgc
     9361 ctctaggctc tctttttgct cctctaaggc tcttttagct tcgagtgggt cagggaaggt
     9421 atcaagcact ttacggataa tgccccctat ctctaatgta attttatcca taaaatacgg
     9481 atcacgttca ttttcaggcg gtcttttatt aaaacggaaa ttgacaatcc gcctatctat
     9541 accgccattc cgttctgtcc atttacaagg gtcgttattg acgatcataa tcattgccgc
     9601 aattcttgcg ttaaatgggt gcttgttctt cggatcgact cgcaccatat caccgccagt
     9661 aatcgctttc aatccgccac catctccagc gtatttcgtt tgctcggaac agataatcag
     9721 ctttttatct tccagccctg cgattttgcg ttcatcatca aagttttcta gccttgctga
     9781 agctgtgttc ttttctccag ctaatagtgt cgcaatgcca gcaaataccg atttaccgct
     9841 tccgcctttc cctgttactt ggaagaatac ttgccagttg tagcggtttg ttaaaatcgc
     9901 atagagagcg gctagaatgt tcttcgcctt gtcttgcttg ccgtctgata caaagttaag
     9961 ccattgatca aagtgtggtg tttcggctac gttctcgtca tagctatgtg gaatataagc
    10021 cgttagccag ttttggcggt taacggttct ttgaacattt accgaataag gtgggtaagg
    10081 ggttaaagtt tcgggttgcc ccttgctatt ccaaccaatc accgtagccg gttgtacttc
    10141 cattttttga agcgtgccga atggtcgggt tttatcgttg gctgtcgtgc gtggataagc
    10201 taagaagcct ttagcttgtt ttgtgcctgt accgttggtt aaatcggttt cttcagtttc
    10261 gacaaaggat tctgaaattt cttcagtcag ccagcctaga atatctacac caccaaagtc
    10321 taaaatctct tgcgtggttt tcgggtaagc gtaaatatta tgaacggcaa tcgttacttc
    10381 attcattttc ggggtggcgg tttcggtgcg tgcttcgcct tcaccgatat gatttaccgc
    10441 tgcaccgcca gccgatacta attttttata ttctttgcct tgggtcagtt tcaccacgtt
    10501 agcaatttgt cgcataacag aatcatctgt taggcgtttc attacttgct tgtcaagttc
    10561 cggaatcact gaatagccac cgtctgcccc tccatttgta ttcgtagcaa gcgaacgcaa
    10621 ttcgcctgtt ttaatccagt ggcgaagctc gtcatcagat actttcacat ttgcggtttc
    10681 aacctgttgc cccggttggt tacgctgttc atcagtaatc gcttcataac gtgcgatttc
    10741 ttttactaaa ttttcagctt gtgagcggag ttcatcaaac ttagcccctt ctgcttcagt
    10801 tgttgagcgt ttttcttcgt ctgctttggt taaaattgaa cgcatttctg cttcaatagc
    10861 cgctttttgt tggcggagtt ctaaaagttt tttaaacatt gccttatcct taattcaaat
    10921 aattgatatt gtagtgaagc gttgctgttt tccacgctga ttcgttagca tcataatcat
    10981 agctatactt agccagcaca cattcgtcca tactgtggaa tgtggcttga ttcatcacat
    11041 cactgatttt ttgagccact aaatctaggt cgttttcggt tgaaaacatt ggtaagtaaa
    11101 tgccgatttt caaataggcg ttgcattcgc catcgcaaag cgtgagttgg ctatattccg
    11161 cttcatcaat gaatacggcg atagccggta attcattttc tacatcggtg aatacggctc
    11221 ggccgttatg gaaatgttga atgccttgaa tgttaccttg taataagtcg ataacttctt
    11281 ggcggattgc ttcgttagaa atcataaaaa agtcctctta attaagaagg ctacaattag
    11341 ccacagaaca atataggcat aatttcaacg gagtaaatag ggtaaaattt aatcg
//
LOCUS       DANLVT010000076        11328 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.076, whole genome shotgun sequence.
ACCESSION   DANLVT010000076 DANLVT010000000
VERSION     DANLVT010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11328)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11328)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11328
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.076"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            328..1056
                     /gene="ttrB"
                     /locus_tag="PXC99_001707"
     CDS             328..1056
                     /gene="ttrB"
                     /locus_tag="PXC99_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrB"
                     /protein_id="HDL5418144.1"
                     /translation="MDLSKRSFLKELSALTVGASFVPLQSAQAFMPAWREGDENKRYA
                     MLIDLRKCIGCQACTVSCSVENATPLHSFRTTVRQYEITNGTQVVNNVVLPRLCNHCD
                     QPPCVPVCPVQATFQRKDGVVVINNEQCIGCGYCVQACPYDARFINEETKTADKCTFC
                     THRLEVGLLPACVESCVGGARVIGDLNDPKSQISQLYQAHKDDLKVLKPEAGTVPHVF
                     YVGLDDDAFVSKIDGQPMLWTGEA"
     gene            1058..2089
                     /gene="nrfD"
                     /locus_tag="PXC99_001708"
     CDS             1058..2089
                     /gene="nrfD"
                     /locus_tag="PXC99_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysulfide reductase NrfD"
                     /protein_id="HDL5418145.1"
                     /translation="MIREVLVEPQHIVWLPWIVHYFFFVGVAATAVFTAVLFAKKSLK
                     PTACELAAVTVALIGSIVAPVALTADLHQPSRILHFYTDFAWRSPMAWGAIILPLFSV
                     AVAGYFVLALAHHTRPNLPKWLAWLQLPILQNQGLLWAFRLFATLTAIGIIGYTVLET
                     YQTGTRTLWHSAWLLPIMLFSAWAVALGLTQAVCKMLFHTQTNTGLWTKLCLILTALS
                     LVGLAFSSPQATQDFAQLFNGSITAYLVGIFWLIALICNFSAKNHRLQWLGVLALIAF
                     GWLLRWVLVIQVQTIAKTNALQNPYHFDWTAVDGGLGIVSIFGLTVLVSIVVWQLILI
                     ICGGRKGEQ"
     gene            2079..5174
                     /gene="ttrA"
                     /locus_tag="PXC99_001709"
     CDS             2079..5174
                     /gene="ttrA"
                     /locus_tag="PXC99_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrA"
                     /protein_id="HDL5418146.1"
                     /translation="MNNKRRNLLKGGLALGGAAAFGAGYSPKVSEIAKGVMHGTSGEK
                     TRDAIHGNSLTPEYQVKDGKLLSNPEQIVCNTQCMGCWTQCGIRARVDLNTNQVIRIS
                     GNPYHPLSSDKTLPFGMPIAKAELLLAGESGIENRSTACARGAAFLEGVNSPYRITQP
                     LKRVGKRGEGKWQTISFEQLVEEIINGGNLFGEGEVEGLKTIRNLVDPINPKQPDLGM
                     KANQLLVTFAGPEGRQPILQRFAQKSFGTINFSNHGAYCGAAYRAGSGAFMKDFDNQQ
                     HAKPDWDHAEFILFIGTSPAQSGNPFKRQARQLAKRRPDDNFSYVVVSPRLEMTSSLA
                     TQNNHWVPIKPEGDLALVMGMLRWIIENERFNADYLSRPSLAAMENAGHVSYANASHL
                     IICEPNHPKFGQALRISDLQDVQLDPEEKVEENLIVVKDQASGELISAKDCLQAVIFV
                     EQIAKLLDGSEVLVKSSMQLLKEATQEKTLAEYSDICGVPVQTIENLAKKFTSHGHKA
                     NAITHGGTMHSTGFYTSWAILLLNAMVGNLNKKGGMAVAAGKFKDFGDGPRYNLANFP
                     NEVKPKGTNLARSKKAYQNSSEFKQKVTKGENPYPAQGAWYPFTGGQTTEMFTSMVQG
                     YPYFAKAWINHMANPVYGLTAMNPIALEKLKDPKILPLFVSIDAFMNETTALTDYIVP
                     DTHNFESWGFSTAWGGVPQRTSTARHPIVPSKNAKTAEGDTICMENFVIAVAKKMGLP
                     GFGENAIADLEGNRYPLHRTEDYFLRAAANIAFAGEKPAPDASEQDLLLTGVQRIMPK
                     IEQTLKAEERLKVANVYCKGGRFAPHESAWKEENMEFQWKNCLQIWNENVYKAQHHSN
                     GEHYWGCPRYMSPRFADGSTLEQHYPQSEWGFKLISFKSNIMSSITAPLLRLLSIKPE
                     GLVAMNRLDAEEKGIKHGDVVKLSTPTAGLTVQIVVLDGIARGTIGIEHGYGHKQIGA
                     SSYTIDGVEIPANPMIAKGINLNDLGIIDHTKAVKSPWVDWVCGSAVRNGIPAKVEKL
                     A"
     gene            5315..6160
                     /locus_tag="PXC99_001710"
     CDS             5315..6160
                     /locus_tag="PXC99_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL5418147.1"
                     /translation="MTFVKKTALSLIATALFATSSFAAEQSQYQHIRNATAKIEYAGK
                     TFLVDPYLAEKDRYLPPNAKKRNPTLDMTVSIDEVLNGVDAVIVTHTHHAHWDDVAQQ
                     RVPKNLPIFVQNAGDARLIRSQGFTDVRVVGKDTPFEGVTLTRTRGQHGTDAMYANPK
                     IAEMVGDAMDVVMKAEGKPTVYLVGDTIWNHEIEHSFNTYKPDFVVLNAGCAKLPNFE
                     GSPIMCTEDVSKAHKIAPQAKILTVHMDALPQTSISSDQMRDYVQKEGLNRVTVPKNG
                     DVIKF"
     gene            complement(6273..7670)
                     /locus_tag="PXC99_001711"
     CDS             complement(6273..7670)
                     /locus_tag="PXC99_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HDL5418148.1"
                     /translation="MKLSKLAFSVALALTVTACTTGNMSNDGTLQQAQQTYQSYDEIT
                     KQYQINEQWWQGYTDAELNRVVDLAIKNNLDLAKSGIAVNKALYNANLVGANLVPTFS
                     GSGSVSAAKGLGSASSNNVSTGVSTTAAQAAFNLSYTVDLWRRLADTASAAEWTHKAT
                     IEDLKATRLSIINAVVTTYYQLAYYRDAIRITEESIRHYEQISRILTNKMNAGAIDSL
                     AVDQAQQAVLNARNSVIDLKTNQKIAEQTLRNLLNVQPNTPLNIRYPNIMSVKLQGVD
                     LNVPVSAIANRPDVVGSLQRLQSAFKTLTATEKSWFPTLTIGGSITGSATNIGNVADN
                     PVGNGLIKLDLPFLDWNRVKNNVKISETDYVTARLNYEQKITSALNEIDRYYYSYTQS
                     RSSLKILQDTNAKNKRISSYYKNRYEQGVSEFREWITALNTELNSQLAILNAKYAILT
                     NENAVYQAMAGKYRR"
     gene            complement(7760..8383)
                     /gene="gmk"
                     /locus_tag="PXC99_001712"
     CDS             complement(7760..8383)
                     /gene="gmk"
                     /locus_tag="PXC99_001712"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDL5418149.1"
                     /translation="MSLGNLYIISAPSGAGKSSLINALLADLPRSEVQLSISHTTRQP
                     RPAEQDGVHYYFTSHDEFKQLIEQGYFLEWAEVFGNYYGTSLPMIERSLEQGIDVFLD
                     IDWQGARQIREKVPNVKTVFILPPSKTELEKRLIGRGQDSAETIAKRMAEAVSEMNHY
                     NEFDYVIINDDFQQALAELKAILIAERLSLGSQQIRHQHLITDLLNN"
     gene            complement(8496..8969)
                     /gene="gpt"
                     /locus_tag="PXC99_001713"
     CDS             complement(8496..8969)
                     /gene="gpt"
                     /locus_tag="PXC99_001713"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HDL5418150.1"
                     /translation="MSEKYTNEKYVVTWDMFHMHARKLAENLLPATQWKGIIAVSRGG
                     LFPAAVLARELGIRHVETVCIASYDHDSQGELNVLHAADTDGEGFIVVDDLVDTGNTA
                     KEIRRMYPKARFVTVFAKPHGAPLVDDYVIDIPQETWIEQPWDLGITFVQPLARR"
     gene            complement(9115..10524)
                     /locus_tag="PXC99_001714"
     CDS             complement(9115..10524)
                     /locus_tag="PXC99_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5418151.1"
                     /translation="MKKYPLLFSLFSPVVWAEKVIEHNTDPISFERQPQAVKFEQNVV
                     KNSQKPTAYQPAYSVNQNVEQQINQAILSQDWATLEPLLSRYPQTENFDPLLWHYAQA
                     ALAYAKKDHQTAVFHYRQLLAKPPSLVYPRFDLALILAEDQQFRAAEQEFKAIQAHLP
                     PELAKIARNTQVQIAENEAWQPDFYLQYTQTDNVNNASSSPIVNVNGRIFRKNADSLP
                     QSAKGVRYGLGLSKLHNVKGNHFVGLTLNYSGIYYWDNRDYREQSVSVSPNYSYRTVA
                     YRLTFSPFIEQNWLGSSRYNVQFGATLNGLRYLNSQWLVSGSFTHLQKRYFEELTASR
                     YNSYQHQLSGGVQWQAVKNGRFFANLDGVREIAREKAQSSNKWLARVGAVFQGERWAT
                     QASIGFGKRYFADKHYLFGYKRLDTEYQANLAVWNRTWHWQGIVPKLNFRYQKIDSNI
                     ADFYSRQNKEVFFTLEKLF"
     gene            complement(10720..>11328)
                     /locus_tag="PXC99_001715"
     CDS             complement(10720..>11328)
                     /locus_tag="PXC99_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin transporter"
                     /protein_id="HDL5418152.1"
                     /translation="AEKEVDPIAIIKAKGIDDTNYGLKLGNSKETIEGKVTVRTQSYL
                     YNQPYSVVTAQAVQRNGWENGNYIDKVDGTVTVKGLKTEKLPTEGTATYSGKAFNHDG
                     AKGFNGGDLTYNVNFSKRTGSGRVEGEFGNLIVLEEGTINNTQISSTVHGNNPLNLSG
                     KYTVEFFGKNAEEIAGEIQTKANLTGEVSNFGLAGTRGDIQK"
BASE COUNT         3072 a         2631 c         2593 g         3032 t
ORIGIN      
        1 aaatagtatt gttatatcta aattaaaagc aggatggaaa attagaaaag gaaagaaaca
       61 taatatatta attgccccaa attctaggag attagcgata cctagtaccc cgagtgatat
      121 taatgcgtat aaaaacttta gatctaaact aaaccatctt attgcttttt aattagtatc
      181 aatgccctat tatctacttg tatagggcat ttcccttcat ccttgaccca aatcaacttt
      241 ccccttgata tgtggaaaac cacaatacct tgccgttccc tctccgcctt agaatacctt
      301 tgttattttt aaatttgtgg gggaaatatg gatttaagca aacgttcctt tttgaaagag
      361 ctttccgcct tgacggtggg ggcgagtttt gtgccgttgc aatcggccca ggcgtttatg
      421 ccggcttggc gtgagggcga tgagaacaaa cgctatgcga tgctgattga tttgcgtaaa
      481 tgtatcggct gtcaagcgtg taccgtgagc tgttcggtgg agaacgccac gccgttgcac
      541 agtttccgca ccacggtgcg tcaatatgaa atcaccaacg gcacgcaggt ggtgaacaat
      601 gtggtgttgc ctcgtttgtg taaccattgc gatcaaccgc cgtgtgtgcc ggtctgcccg
      661 gtgcaggcaa cctttcaacg taaagacggt gtggtggtga ttaacaatga gcagtgcatc
      721 ggctgtggtt actgcgtgca agcctgcccg tatgatgccc gttttatcaa tgaagagacc
      781 aaaaccgccg ataaatgcac cttctgcact caccgtttgg aggtaggtct gctgccggcg
      841 tgcgtggaaa gttgcgtggg cggggcaagg gtgattggcg atttgaacga cccgaaaagt
      901 caaatttccc aactttatca agcccacaaa gatgatttga aagtcctgaa accggaggcc
      961 ggcaccgtgc cacacgtttt ctatgtgggg ctagacgatg atgcctttgt gagcaaaatt
     1021 gacgggcaac caatgctctg gacgggggag gcgtaaaatg attcgtgaag tattagtgga
     1081 accgcaacat atcgtctggt tgccgtggat tgtgcattat ttcttcttcg taggcgtggc
     1141 ggcaacggca gtgtttaccg ccgtgctgtt tgcaaaaaaa tcactgaaac cgaccgcttg
     1201 cgagctggcg gcggtgacgg tagccttgat tggctcgatt gtcgcccctg tggcattgac
     1261 tgccgacctg caccaaccga gccgtattct gcatttctac accgattttg cgtggcgatc
     1321 tccaatggcg tggggagcga ttatcctgcc cctgttcagc gtggcggtag cgggttattt
     1381 tgtgctggca ttggctcacc atacccggcc gaacctgccg aaatggttag cgtggctaca
     1441 gttgccgata ctgcaaaatc aaggcttgct ttgggcattc cgcctgtttg ccacactcac
     1501 cgctatcggc attatcggct acaccgtgct tgaaacctac caaaccggta caagaacctt
     1561 atggcacagt gcgtggctgc tgccgattat gctcttttct gcgtgggcgg tggcattggg
     1621 gcttacccaa gcggtctgca aaatgctgtt ccacacccaa accaacacgg ggctatggac
     1681 aaaactctgc ctgattttaa ccgcactttc gcttgtcgga ctagcattca gtagtccaca
     1741 agccacacaa gattttgccc agctcttcaa tggctcaatc accgcttacc ttgtcggcat
     1801 tttctggcta attgccctca tttgcaattt ttctgccaaa aaccaccgct tgcaatggct
     1861 cggcgtgctt gccctcatcg ctttcggctg gctactccgc tgggtactgg tgatccaagt
     1921 ccaaaccatt gccaaaacca atgccttgca aaatccatat catttcgatt ggacagccgt
     1981 cgatggtggt ttggggattg tctcgatttt tgggctaacg gtgctagtaa gtatcgtggt
     2041 atggcaactg attttaataa tttgtggggg aagaaaaggt gaacaataaa cgcagaaatc
     2101 tgttgaaagg cgggctggca cttggtgggg cggcggcgtt tggggccggg tattcgccga
     2161 aggtgtcgga gattgccaaa ggggtgatgc acggcacatc gggcgagaaa acccgtgatg
     2221 caattcacgg taattcgctc acgccggagt atcaggtaaa agacggcaaa ctgctcagca
     2281 atcctgagca aattgtgtgc aatacacagt gtatgggctg ttggacgcag tgtggcattc
     2341 gggcgagggt ggatttgaac accaaccaag tgattcgcat ttcgggcaat ccgtatcacc
     2401 cgctttcctc cgacaaaacc ctgccgttcg gtatgccgat tgccaaggcg gaactgttgc
     2461 tggcgggcga aagtggcatt gaaaatcgct ccaccgcctg tgctagaggg gcggcgttct
     2521 tggagggggt gaacagcccg tatcggatta cccaaccgtt gaaacgggtc ggaaaacggg
     2581 gcgaaggcaa gtggcagacc atcagctttg agcagttggt ggaggaaatc atcaatggtg
     2641 gcaacctatt tggtgaaggc gaagtggagg gcttgaagac gatccgcaat ctggtcgatc
     2701 cgattaaccc gaaacagcct gatttgggaa tgaaagcaaa ccagctttta gttacttttg
     2761 ccggccccga aggtcgtcag ccgattttgc aacgctttgc ccaaaagagc ttcggcacga
     2821 tcaacttttc caaccacggg gcttattgtg gcgctgcgta ccgtgccggt tcgggtgcct
     2881 ttatgaaaga ttttgacaac caacaacacg ccaagccgga ctgggatcac gctgaattta
     2941 ttctgtttat cggcacgtct ccggcacagt cgggcaatcc gtttaagcgt caggctcgcc
     3001 agcttgccaa acgccgccct gatgacaatt tcagctatgt ggtggtttcc cctcgtttgg
     3061 agatgacctc ctccctcgcc acccaaaaca accattgggt gccgattaag cccgagggcg
     3121 atttggcgtt ggtaatggga atgttgcgtt ggattatcga aaacgagcgt ttcaatgctg
     3181 actacctctc ccgcccaagt ctggcagcga tggaaaatgc cggccacgtc agctatgcca
     3241 atgcgtcaca tctgattatt tgcgaaccga accacccgaa attcgggcag gcgttgcgga
     3301 ttagcgatct gcaagatgtg caactcgacc ccgaagagaa agtggaagaa aacctgattg
     3361 tggtaaaaga tcaggcaagc ggcgaactca tttcagcaaa agattgctta caagcggtca
     3421 tttttgtcga acaaattgca aaactgcttg atggctcgga agtgttggtg aaatcctcaa
     3481 tgcagttgct gaaagaggcg acacaagaga aaacccttgc cgaatatagc gacatttgtg
     3541 gcgtgccggt gcaaaccatt gaaaacttag cgaaaaaatt cacttcgcac ggtcataaag
     3601 ccaatgccat cactcacggc ggcacgatgc acagcaccgg tttttatacc agttgggcga
     3661 ttttgttgct gaatgcaatg gtcggtaacc tcaacaaaaa aggcggaatg gcagtagccg
     3721 caggcaaatt caaagatttc ggggacgggc ctcgctacaa tttagcgaac ttcccgaatg
     3781 aagtgaagcc aaaaggcacg aaccttgccc gcagtaaaaa ggcgtaccaa aattcaagcg
     3841 aatttaagca gaaagtgacg aagggcgaaa atccgtatcc ggcacaaggg gcgtggtatc
     3901 cgttcaccgg cgggcaaact accgagatgt ttacctcaat ggtgcagggc tatccatact
     3961 ttgcgaaagc gtggatcaac catatggcga accccgttta cggcttaacc gctatgaacc
     4021 cgattgcgtt ggagaaatta aaagatccga aaattctacc gctctttgtc tctattgatg
     4081 cttttatgaa cgaaaccact gcactgacgg actacatcgt gccggacacc cacaactttg
     4141 agagctgggg cttttcaacg gcgtggggcg gtgtgcctca acgcaccagc accgcacgcc
     4201 acccgattgt gccgtccaaa aacgccaaaa ctgccgaagg cgacaccatc tgtatggaga
     4261 atttcgtgat tgcggtggcg aaaaaaatgg gcttgccggg ctttggcgaa aatgcgattg
     4321 ccgatttaga aggcaaccgc tatccgctcc accgtaccga agattacttc ctacgggcgg
     4381 cagcgaacat tgcctttgcc ggtgagaaac ctgcaccgga cgccagcgag caagatctgc
     4441 tgctcaccgg cgtgcaacgg attatgccga aaattgaaca aacgctaaaa gccgaagagc
     4501 gattaaaagt ggcgaatgtg tattgcaaag gcggacgttt tgccccacac gaaagtgcgt
     4561 ggaaagagga gaatatggag ttccagtgga aaaactgcct gcaaatttgg aacgaaaacg
     4621 tgtataaagc ccagcaccac agcaacggtg aacactattg gggctgccct cgttatatgt
     4681 cgccacgttt tgcggacggc tccacgctgg agcagcacta tccgcagtcg gaatggggct
     4741 ttaaactgat ttcgtttaaa tcgaacatta tgagcagtat taccgcccca ctgttgcgtc
     4801 tgctctcgat caagcctgag ggcttagtgg cgatgaaccg tttagatgcg gaagaaaaag
     4861 gcattaaaca cggcgatgtg gtgaaactca gcaccccaac cgccggcttg acggtgcaga
     4921 ttgtggtgtt ggacggtatc gcccgaggca caatcggcat cgaacacggc tacggtcata
     4981 aacagattgg ggcaagttcc tacaccattg acggcgtgga aattccagcc aacccgatga
     5041 tcgccaaagg gattaacctc aacgacctcg gcattatcga ccacaccaaa gcggtcaaat
     5101 ccccgtgggt agattgggtc tgtggctcag cggtgagaaa tggcattccg gcgaaggtag
     5161 agaaattagc ctagccgaac aagcggttgg ttttgcagaa aaatgtgcaa aatcgaccgc
     5221 ttttattgat gtaagggaca ctgttcctta tgcaaaccag cattgcagag cgtaaaaaat
     5281 catactctgc attttaattt attttggaga acctatgact tttgtcaaaa aaacagcact
     5341 gagcctgatt gcaacggcac ttttcgctac atcaagtttt gccgctgagc agagccaata
     5401 ccaacatatt cgtaatgcaa cggcgaaaat tgaatatgcc ggcaagacgt ttttggttga
     5461 tccgtattta gcggagaaag atcgctactt accgccgaat gcgaaaaaac gtaatccgac
     5521 cttggatatg actgtgagca ttgatgaagt gttaaatggc gtggatgcgg tgatcgtaac
     5581 tcacactcac cacgctcact gggacgatgt agcacaacaa cgtgtgccga aaaatctgcc
     5641 gatttttgtg cagaatgccg gtgatgcccg tttaatccgt tcacaaggct ttaccgatgt
     5701 gcgtgtggtc ggcaaagata ccccgtttga aggcgtaacc ttaacccgaa ctcgtggcca
     5761 gcacggcacc gatgcgatgt atgcgaaccc gaaaattgcc gaaatggtcg gcgatgcgat
     5821 ggacgtagtg atgaaagcgg aaggcaaacc gaccgtctat ttggtgggag ataccatttg
     5881 gaaccacgaa atcgaacatt cgttcaacac ttacaaacca gactttgtgg tgctgaatgc
     5941 cggctgtgcc aaactaccaa actttgaagg cagcccgatt atgtgtaccg aagatgtttc
     6001 caaagcacac aaaatcgctc cacaagcgaa aatcttaact gtgcatatgg acgccctgcc
     6061 acaaacctca atcagcagtg atcagatgcg tgattatgta caaaaagagg gattaaatcg
     6121 tgtaactgtg ccgaaaaacg gtgatgtgat taagttctag tagctaaact aacattacca
     6181 aaatggttta agtagcaata aatagcgaag cgggttaagc catcaagcct taacccactt
     6241 ttaccaacca tagtatatag ttttagatat aattatcttc tgtatttacc tgccattgct
     6301 tggtaaaccg cattctcgtt ggtcaaaatc gcatattttg catttaaaat cgccaactga
     6361 gaattaagct cggtattcag tgcggtaatc cactcacgga actccgacac cccttgttca
     6421 taacggtttt tatagtatga actgatacgt ttatttttcg cattggtatc ttgaaggatt
     6481 tttaacgagc ttctcgactg cgtataactg taataataac ggtcaatttc atttaaggct
     6541 gaggtaattt tttgctcata gtttaaacgg gcagtcacat aatccgtttc agaaattttt
     6601 acgttatttt taacccgatt ccaatctaag aacggtaaat ccaatttaat taagccgtta
     6661 cccacagggt tatctgccac attgccgata ttggttgcac taccggtaat agaaccaccg
     6721 atggttaagg ttgggaacca gcttttctcg gttgcggtta aggttttaaa tgcactttgt
     6781 aagcgttgta acgagcctac tacatcaggg cgattagcaa tggctgacac tggcacattt
     6841 aaatctaccc cttgcaattt cacgctcata atattcgggt aacgaatgtt aagcggagta
     6901 tttggctgaa catttaacaa attgcgtaat gtttgctcgg caattttttg gttggttttc
     6961 agatcaatta cactatttct ggcgtttaag accgcttgtt gagcctgatc aaccgctaaa
     7021 ctatcaatcg caccggcatt cattttgtta gttaaaatac ggctgatttg ctcataatgg
     7081 cgaatgctct cttcggtaat acgaatcgca tcacgatagt aagctaactg gtagtaagta
     7141 gtcacaaccg cattaataat agataaacgg gtagctttta agtcttcaat ggtggcttta
     7201 tgcgtccatt ctgccgcact ggcggtatcg gctaaacgtc gccataaatc cacagtataa
     7261 cttaaattaa atgcagcttg agctgcggtt gttgaaacac cggtcgaaac attatttgaa
     7321 gaagccgaac ctaaaccttt agccgcagaa acagaacctg aaccactaaa ggttggcact
     7381 aaatttgccc ctactaaatt agcgttatac aaggctttat tgactgcaat tccgcttttg
     7441 gctaaatcaa ggttattttt gatggctaaa tcaaccacac ggtttaattc cgcatccgta
     7501 tagccttgcc accattgctc gttaatttga tattgtttgg taatttcatc atagctttga
     7561 taggtttgct gtgcttgttg caaagtcccg tcattgctca tattccctgt ggtacaagcc
     7621 gttacggtta gagccaacgc cacagaaaat gctaattttg aaagtttcat tacatttcct
     7681 tttgaaaata aagaggggaa aatgggcgta ttctacccaa aaacagattg cctttccagt
     7741 taaatgaaca actgttcatt taattattta acaaatcagt aatcaaatgc tgatgacgaa
     7801 tttgttgcga acctaagctc aaacgctcgg caattaaaat cgcttttagc tctgccaatg
     7861 cctgttggaa atcatcatta ataatcacat aatcgaactc attgtaatgg ttcatttccg
     7921 acaccgcctc tgccatacgt ttggcaatgg tttcagcgga atcttgccca cgcccgatta
     7981 aacgtttttc caattctgtt tttgacggtg gcaaaataaa aacggttttc acattcggca
     8041 ctttttcccg aatttgtcta gccccttgcc agtcaatatc caaaaagaca tcaatgccct
     8101 gctctaggct acgttcaatc atcggcaatg atgtgccgta ataattgcca aacacctccg
     8161 cccattctaa aaaataccct tgctcaatca gctgcttaaa ctcatcgtgc gaagtgaaat
     8221 aataatgcac gccgtcctgt tctgccggac gaggctgacg ggtagtgtgt gaaatcgaaa
     8281 gctgtacttc cgaacggggt aaatccgcca acaaggcgtt aattaaggaa gattttcctg
     8341 ctccacttgg ggcagaaata atataaagat tgcctaaact cattatttgt atatacctat
     8401 ttgattttgg gaatagggcg aatgatgatt cgcccctaca tttcatagga ataaataaaa
     8461 aataatggac aactttcatt gtccattaca caaaattatc tacgtgccaa aggctgaacg
     8521 aaggtaatgc ctaaatccca aggctgctca atccacgttt cttgtggaat atcaatcaca
     8581 taatcatcaa ccaacggtgc accgtgcggt ttcgcaaaca cggttacaaa acgagctttc
     8641 gggtacattc tgcgaatttc ttttgccgtg ttgccggtat ccactaaatc atctaccaca
     8701 ataaagcctt cgccatcggt atcggctgcg tgtaacacat ttaactcacc ttggctatcg
     8761 tgatcgtagc tggcaatgca cactgtttct acgtggcgaa tacccaactc acgtgctaaa
     8821 acggctgccg gaaacaagcc gccacggctc accgcaataa tccctttcca ctgtgtggca
     8881 ggtaataaat tttctgccaa cttgcgagcg tgcatatgga acatatccca cgtcacgaca
     8941 tatttttcat ttgtgtattt ttcactcata gaaacaacct aatataaaat tgggggctac
     9001 cccgatataa aaaattgcac taggataacc cgaaaatgct tttttcgcca tcatttcatt
     9061 tatttttttg tgccggcagc tacgcaatcg tatgcttagc acaaaaaacc aacactaaaa
     9121 tagcttttct aaagtgaaaa agacttcctt gttttggcga gagtaaaaat cagcaatatt
     9181 gctgtcaatt ttttgataac ggaaattcag cttcggcaca atgccctgcc aatgccaagt
     9241 gcggttccaa accgctaaat tggcttgata ttccgtgtct aaccgcttat agccaaacaa
     9301 atagtgcttg tcggcaaaat atcgcttgcc aaagccgata cttgcctgcg ttgcccagcg
     9361 ttcgccttga aaaaccgccc ccactcgagc cagccactta ttcgagcttt gtgctttttc
     9421 ccgtgcaatt tcacgcacgc cgtctaaatt tgcaaaaaac cgcccatttt tgaccgcttg
     9481 ccactgcaca ccgccactga gttggtgctg atagctgtta taacggcttg cggttagctc
     9541 ctcaaaatac cgtttttgca aatgggtaaa actccccgac accaaccatt gcgaattaag
     9601 gtaacgcaaa ccgttgagtg ttgccccaaa ttgaacatta taacggctac tccccagcca
     9661 attttgctca ataaaaggcg aaaaagtcag ccgataagcg acggtgcggt agctataatt
     9721 cggcgaaacg gatacggatt gctcacggta atctcggtta tcccaatagt aaatcccgct
     9781 ataattgagc gttaaaccga caaaatgatt gcctttcacg ttgtgcaatt tactcaaccc
     9841 taagccataa cgcacgcctt ttgctgattg tggcaaactg tctgcatttt tgcggaaaat
     9901 ccgcccattt acattcacaa tcggcgaaga tgaggcatta ttcacgttat ctgtttgggt
     9961 atattgcaga taaaaatcgg gctgccacgc ctcattttca gcaatttgga cttgagtatt
    10021 gcgggcaatt ttagcaagtt ccggcggtaa atgggcttga atagccttaa attcctgctc
    10081 tgccgcacga aattgctgat cttctgccaa aatcaacgcc aaatcaaaac gagggtaaac
    10141 caaactcggg ggcttagcta acagttggcg atagtgaaaa actgcggttt gatgatcttt
    10201 tttcgcatag gcaagtgcgg cttgcgcata gtgccacaac aacgggtcaa aattttcagt
    10261 ttgcggataa cggcttaaaa gcggttcaag cgttgcccaa tcttggctga gaatcgcttg
    10321 gttaatttgc tgttcaacat tctgattgac tgaatacgca ggctgataag cggtcggttt
    10381 ttgtgaattt tttacaacat tttgctcaaa tttaaccgct tgcggctgac gctcaaagga
    10441 aatcgggtca gtgttgtgtt caatcacctt ttctgcccat acaacggggc tgaacagcga
    10501 aaataaaagg ggatattttt tcataaagat aaagaaaatt ggtaggggcg gacctatatg
    10561 ttcgcctcta cgggatttat cactctctcc ccttgtggga gagggttatt agaagctgta
    10621 aattgaaatc taaactattg tgtcttatgg tatctacaag caatatcaag acaaatgccg
    10681 tttaattttt cgttaaacgg cattgaacgt tagaaaaggt tatttttgga tatcgccacg
    10741 agtgccggca agtccaaaat tactcacttc cccagtaaga tttgcttttg tctgaatttc
    10801 accggcaatt tcctctgcat ttttaccgaa aaattcgact gtatattttc cagaaaggtt
    10861 taaaggatta ttgccatgta ctgttgaaga aatctgagta ttattaatcg tcccctcttc
    10921 taatacgatt aagtttccaa attctccctc aactctacct gaaccggtac gcttagagaa
    10981 attaacatta taggttagat caccaccatt aaaaccttta gctccatcgt ggttaaatgc
    11041 ttttcctgaa tatgttgcag taccctctgt tggtaatttc tctgttttca atcctttaac
    11101 tgtaactgtt ccatcaactt tatcaatata attaccgttt tcccagccat ttctttgaac
    11161 tgcttgtgct gttactacag aatatggctg attatataaa taactctgtg ttctgactgt
    11221 gactttaccc tcaatagttt ctttactatt accaagtttt aagccgtaat ttgtatcatc
    11281 aatacctttt gctttaataa tagctatagg atctacttct ttttctgc
//
LOCUS       DANLVT010000077        11230 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.077, whole genome shotgun sequence.
ACCESSION   DANLVT010000077 DANLVT010000000
VERSION     DANLVT010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11230)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11230)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11230
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.077"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            133..1929
                     /locus_tag="PXC99_001716"
     CDS             133..1929
                     /locus_tag="PXC99_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate-specific subunit IIBC"
                     /protein_id="HDL5418153.1"
                     /translation="MDFLTEILLFLKDQVLNKAPFLLGIVACLGYILLKKDTSTIIKG
                     TIKTIVGFMIVQAGSGFLVTNFKPVIDGLAKYHQLTGAVIDPYTSMQSTIQTMGENYA
                     WVGYAVIGALFLNILLVVFRRLTGIRTIMLTGHIMFQQAGLVAVFYMIIGASMWETII
                     YTSVLMALYWGISSNIMYKPTQAVTGGAGFSIGHQQQIASWIAVKLAPKLGDKDDTVD
                     KMKLPNWLNIFHDSISATALVMTIFFGIILLSFGLDNLKELAGKTNQFMYILEMGLKF
                     AVAIQIIVTGVRMFVAELSEAFKGIAERLIPNSVLAIDCAAIYAFSPNAMVFGFMWGA
                     IGQFVAVGGLLAVGSPVLIIPGFIPMFFSNATIGVFANQFGGWKAVMKICFVMGIIEV
                     LGSAWVIQMLASQGTTFNGWMGMADWALFFPPILQGIISIPGFFFVIVAAAMVYMFFA
                     SKQLRAEEAEAAARGITLEQLDGYGLDEVKAEPKAEAVVQQAVENAENSANPIRILAV
                     CGSGQGSSMMMKMKIKGYLDKRGIPNIMDSCAVTDYKGKLSEVDIIVSSKHLANEIEV
                     PEGKAVLGVQNMLNPNSFGDELVELINQHNAK"
     gene            2009..3070
                     /locus_tag="PXC99_001717"
     CDS             2009..3070
                     /locus_tag="PXC99_001717"
                     /inference="COORDINATES: protein motif:HMM:NF012376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL5418154.1"
                     /translation="MKKILSTLFMLSAVSVAVAKEVNIKLLGTSDVHGRVVPWSYGAD
                     VEDKSGSFAQIATYVKEVRANHKNVLLFDIGDAIQDNQVEEFAKTLDKAKNNPVPKVL
                     NAMNYDIFILGNHEFNFGMPNLDAILKDINAKILTANFYHKDGKRYVEPTTIIERDGV
                     KLGIIGLTTPMSAIFEKDTGHLDAMKFTSPIEEAKAQIADLKAKGVDAIIVLAHMGIE
                     NENNIPDTGVADLVNAVDGIDVIIAGHMHKDVPSETIKNTLITEPHRYGTVVSEVDLA
                     FDVNDKGEVKLLSKTAKTVPVKKLASDPEIEKIYQPYHNELRALNNVKIGETAQDLIP
                     QGKITVYRLLSRKTPECPH"
     gene            3058..3522
                     /locus_tag="PXC99_001718"
     CDS             3058..3522
                     /locus_tag="PXC99_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HDL5418155.1"
                     /translation="MSSLIHDVQQHYSGADVVSFAFDYETVRLDKGDIKKKDIIYNYR
                     YAGGDVSMYELTGKQLKQYMEWSADYFDTIQAGDKDYRYNAVRGKSKYVTFDLFGGVS
                     YNIDLRNPSGSKIVDLKLANGSLITDDGKYKVGMNSYRFGQLTKKGGIWEGQ"
     gene            3553..3669
                     /locus_tag="PXC99_001719"
     CDS             3553..3669
                     /locus_tag="PXC99_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ser/Thr protein phosphatase"
                     /protein_id="HDL5418156.1"
                     /translation="MGAEKGTIQNMLIDYITNVKGGKIEGKSHNRWAIIGLN"
     gene            3685..4152
                     /locus_tag="PXC99_001720"
     CDS             3685..4152
                     /locus_tag="PXC99_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL5418157.1"
                     /translation="MNLKQSLIENNSILLNQSAANWEDAIKIGTDLLVKAGTIEPRYY
                     DNIVSKIKEMGPYIILAPGLAMPHARPEEGVIKTSFALVTFDTPIYFEGEDEPVHVML
                     TLAGSDSDQHMQGLVEITQVLDDPESDTGVDLDKIRRCKTAEEVYAVIDQALA"
     gene            4207..4887
                     /locus_tag="PXC99_001721"
     CDS             4207..4887
                     /locus_tag="PXC99_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-L-gulonate-6-phosphate decarboxylase
                     UlaD"
                     /protein_id="HDL5418158.1"
                     /translation="MSKPLLQIALDSLSLEKAVADAKQAENQVEIIECGTILAFAEGM
                     KAVSTLRVLHPNHIIVCDLKTTDGGAILAKMAFEAGADWLTVSAAAHPATKAACKKVA
                     DEFNAAHPELKVKKEIQIEIYGNWTVEKDAKEWVELGVTQAIYHRSRDAELAGKGWTT
                     EDVELMKQLSDLGIELSITGGIVPEDIHLFKEIKNAKAFIAGRALVGEKGKQTAEAIR
                     VEIDKYWN"
     gene            complement(4955..6097)
                     /locus_tag="PXC99_001722"
     CDS             complement(4955..6097)
                     /locus_tag="PXC99_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HDL5418159.1"
                     /translation="MKIVIAPDSFKESLTALEVAQAIQQGFARVFPEAEYQLVPMADG
                     GEGSVQSLVDATHGSLQKISVIAPLANEVEGFFGLSGDQKTAFIEMAAASGLHLVPME
                     QRNPLVTTSYGTGQLIKAALDLGVEKIILGIGGSATNDGGVGMLQALGAKFLNAEQRE
                     IGFGGEALSQIQQIDLSGLDSRLKQVEFEVACDVDNPLCGERGASAIFGPQKGATPEM
                     VKMLDHALLHFAETVKSQLGIEIAEKAGAGAAGGMGGGLLLLPNVTLRSGVQIILEAT
                     DLAEKLADADLVVTGEGRMDAQSIAGKTPIGVAKVAKQFGKPVIAIVGSLKEDYPVVY
                     QHGIDAVFPIIRQVSNLEAVLKSGKENLISTAENVARLWKISALQE"
     gene            complement(6107..7486)
                     /locus_tag="PXC99_001723"
     CDS             complement(6107..7486)
                     /locus_tag="PXC99_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HDL5418160.1"
                     /translation="MSGIALILIFLVAIIIMIYMIAKWKVHPFLALMSISIALALVAG
                     LPLAKIPTIVGEGFSNTFKSIGIVIIFGAIIGTILEKTGAALKLADMVVKVVGQKRPE
                     LAMLIMGWVVGIPVFCDSGFVVLNPIREAIRKKILANPVGMAVALSAGLYASHVFIPP
                     TPGPIAAAGAVGLSHNLLLVIGMGFVVSIPVLIASYFFAKYVGKQVSVMEEAQADQVI
                     SQSYEDLIKQYGKLPSGFLSFAPIFMPIILMAIGSIAKIAGVSGDFGVFLQFVGNPII
                     ALAIGVIFAIFLLVSSGKMAEFDSLTNDTLKLVGPILFITAAGGVLGNVITQAGFVDY
                     IKQNAHIISTAGIFFPFLISAILKTAQGSSTVAIITTASIMGMFNAPDSLMNALGLTS
                     EMAAALTVMAIAAGSMCVSHANDSYYWVVTNFTKLTPQQGYRTQTTLTFIMGVVGMLT
                     VYLLSLILL"
     gene            complement(7608..8702)
                     /locus_tag="PXC99_001724"
     CDS             complement(7608..8702)
                     /locus_tag="PXC99_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5418161.1"
                     /translation="MKLNQAIADRIVKRTMQIIPNSVNVMDSEGVIIASGDVGRIGQR
                     HTGAVIALRNDQAVEIDENLAKQWCDEVKAGINLPLHYLGSTIGVVGISGQPQQVRQY
                     AQLVKMAAELIMQQAFELEQERWQRRYREEFVRALLKGSLSTAEIQQQAVFFGQDFAK
                     PLSVMVIKIHGSTAEKLQRLIDFFEHYFPSLLTAVIGLDKIALLNHLSNEKSLIRNAL
                     NKLNDPDISFKTVVGLAVENLSQTHISYQTACHTLNYAEQIQSRKQIIHFEDFKLPAL
                     LHSFSHSWEAKTLLSPFQALLVSDKKQVLLKSLRYYFFANCDLDHAAKKLFIHPNTLR
                     YRLEKIEQITGLSFNNIEQKFVLYLGAVLS"
     gene            complement(8806..9258)
                     /locus_tag="PXC99_001725"
     CDS             complement(8806..9258)
                     /locus_tag="PXC99_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HDL5418162.1"
                     /translation="MNLKAVAVSALAMSSVAMADIADVKPVVFESKFDFQTTVTTLTN
                     TLKEKGMTIFAEIDHQAAAKQAGLEMQPATVLVYGTPKAGTPLMVKDPMLALQLPLKV
                     LITEPNKGKVEVMLNRADQVVAHANTDYADVENNLAKAEKLIKATVAK"
     gene            complement(9279..10031)
                     /locus_tag="PXC99_001726"
     CDS             complement(9279..10031)
                     /locus_tag="PXC99_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HDL5418163.1"
                     /translation="MHFEKRSHWSGELGREMSFNVYGHAGKPVIVFPSSGGNENEYGN
                     FGMIEACRSFIERGLIKFYTPDSYDAESWLSKHKSGHDMALAHNAYDRYIIHELVPLI
                     RHESHWNGTMIATGCSMGAFHTVNFALRHPDLFDIAIALSGVYDARFFSGEFYGDKAV
                     YFNSPIDYVWGQNDDWFLDRYRQNHYVIAVGQGAWEEQHIEDTRRLQEAFNAKGIDAW
                     FDYWGFDIDHDWPTWRKQMPYFLGKLEEQGII"
     gene            complement(10042..11226)
                     /locus_tag="PXC99_001727"
     CDS             complement(10042..11226)
                     /locus_tag="PXC99_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HDL5418164.1"
                     /translation="MSRPLNFVMISPHFPTNFETFAIRLREAGFNTLGIADAPYESLS
                     ENLRHSLTEYYRVDNMEDYEQVYRAVAYFAHKYGRIDRIESHNEYWLELDAKLRTDFN
                     VFGYKSDDMLSIKTKAQMKEVFRKTGLKVAQGRVFKDDEDARKLAKQLKFPVIIKPNS
                     GVGASDTYKIKTAEELEAFFGYKTPTVEYIMEEFIDGDIITFDGLTDKEGNIVFYSSL
                     EYSEAVLDTVSKDGDMFYYVPCEISPKLVEMGKQCVKAFNVKERFFHFEFFRVKGSKK
                     EELLPLEINCRPPGGLTIDMWNYANDFDVFREFANIVKENKFYADIQHPWNVVYISRK
                     ANQNYVNSIEAVCEKFAGNIISVQSVPGVFAKVMGEQGILARTETMEQMREIAQFAQA
                     KQ"
BASE COUNT         3231 a         2586 c         2352 g         3061 t
ORIGIN      
        1 aaataaaatg tgatctcgct cacaaataat taaaaataat cttttttaat ctttttctag
       61 cgtttatcat taattccgac aacttctctg gagtttttta gttctattaa tctctcaaca
      121 aagaggcccc ctatggactt tttaaccgaa attctccttt tcttaaagga tcaagtgctg
      181 aataaagcac ccttcttact aggtatcgta gcttgcttag gttacattct tcttaaaaaa
      241 gacacttcta cgattattaa aggcacaatt aaaacaattg tcggttttat gattgtacaa
      301 gccggttcag gtttcttagt aaccaacttt aagccggtta ttgatggctt agccaaatat
      361 caccaactta ccggtgcagt aattgaccct tacaccagta tgcaatcgac cattcaaacc
      421 atgggcgaga actacgcttg ggttggttat gccgtaattg gggcgctgtt cctcaatatt
      481 ctattagtgg tgttccgccg tttaaccggt atccgtacca ttatgctcac cggtcacatt
      541 atgttccaac aagcaggctt ggttgcggtg ttctatatga tcatcggagc gtcaatgtgg
      601 gagaccatta tctacacctc agtgttgatg gctctttatt ggggtatttc gtctaatatt
      661 atgtataaac caacccaagc ggtaacaggc ggtgcaggct tctcaattgg tcaccaacaa
      721 caaattgctt cttggattgc agtcaaactc gcaccaaaac ttggcgataa agacgatact
      781 gtagataaaa tgaaattgcc taactggctc aatattttcc acgacagtat ttctgcaacc
      841 gcattagtaa tgaccatctt ctttggaatc atcttacttt cattcggttt agataacctc
      901 aaagaacttg ctggcaaaac caaccagttt atgtacattc ttgaaatggg cttgaaattt
      961 gcggtggcaa ttcaaatcat tgtaaccggc gtacgtatgt ttgtagctga gctttcagaa
     1021 gccttcaaag gtattgctga acgcttaatt ccaaactcag tattagcgat tgactgtgcc
     1081 gctatctacg ctttctcgcc aaatgcgatg gtattcggct ttatgtgggg ggctatcggt
     1141 caatttgtgg cagtaggcgg cttgcttgca gtaggctcac cggtgcttat tattccgggc
     1201 tttatcccga tgttcttctc taacgcaacc attggtgtgt ttgcaaacca atttggtggt
     1261 tggaaagcag taatgaaaat ctgttttgtg atgggtatta ttgaagtgct tggctcagct
     1321 tgggttattc aaatgcttgc ttcacaaggc acaaccttta acggttggat gggtatggct
     1381 gactgggcat tgttcttccc accaatccta caaggtatta tcagcattcc gggcttcttc
     1441 tttgtaattg tggcagcagc aatggtttat atgttcttcg catctaaaca acttcgtgcc
     1501 gaagaagcag aagcggcagc tcgtggcatt acacttgaac aattagacgg ctacggctta
     1561 gatgaagtaa aagcagaacc aaaagcggag gcagtagtac aacaagcggt cgaaaatgcc
     1621 gaaaattctg caaacccaat ccgcattcta gcggtgtgtg gctctggtca aggctcatca
     1681 atgatgatga aaatgaagat caaaggctat ctcgacaaac gtggtattcc gaatattatg
     1741 gattcctgtg cggtaactga ttacaaaggc aaattaagcg aggttgatat tattgtctcc
     1801 agcaaacatt tagccaacga aatcgaagta ccggaaggca aagcggtatt aggtgtacaa
     1861 aatatgctaa atccaaactc atttggtgat gaattagttg agctaatcaa tcagcataat
     1921 gcaaaataag taagtttagg ggtgaataat cacccctatc tatgctaaag attgtaaaaa
     1981 ctcacttcat caaacgagga attatccaat gaaaaaaatc ttatccaccc tgtttatgct
     2041 ctccgcggtt agcgttgccg ttgccaaaga ggtaaacatt aaactacttg gtacctcaga
     2101 cgttcacgga cgtgttgtgc cgtggagcta cggggcagac gtggaagaca aatccggctc
     2161 attcgcccaa attgcaacct atgtcaaaga ggtgcgtgcc aaccacaaaa atgtgttgct
     2221 gtttgatatt ggcgatgcga ttcaagacaa ccaagtcgaa gagttcgcta aaaccttaga
     2281 caaagcgaaa aacaatcccg tgccgaaagt gctgaatgca atgaattacg acatcttcat
     2341 tctcggcaac cacgaattta acttcggaat gccgaattta gatgcgattt taaaagacat
     2401 caacgccaaa attctcactg ccaacttcta tcacaaagac ggcaaacgct acgttgagcc
     2461 aactaccatc attgaacgtg atggcgtaaa acttgggatt atcggcttaa ccaccccaat
     2521 gtcggctatt tttgaaaaag acaccggtca tttagacgca atgaagttca cttcgccgat
     2581 tgaagaggcg aaagcccaaa ttgccgatct caaagccaaa ggcgtggacg ccattattgt
     2641 gctggcacat atggggattg agaacgaaaa caacattccc gacaccggcg tggcggattt
     2701 agtgaatgca gtggacggta ttgatgtaat tatcgccggc catatgcata aagatgtgcc
     2761 gagtgaaact atcaaaaata ccctgattac cgaaccgcac cgctacggca cagtggtttc
     2821 cgaagttgat cttgcctttg atgtgaatga caaaggcgaa gtgaaactac tttctaaaac
     2881 cgccaaaacc gtaccggtga agaaactcgc aagcgatccg gaaatcgaaa aaatttacca
     2941 accgtatcac aatgaactgc gtgccttaaa caacgtcaaa atcggtgaaa ctgcacaaga
     3001 tttaatccca caaggcaaaa tcacggtgta tcgattgctt tctcgcaaga caccggaatg
     3061 tcctcattga tccacgatgt gcaacaacat tacagcggtg cagacgtagt gagttttgca
     3121 tttgactacg aaaccgtgcg tttagacaaa ggcgacatca agaaaaaaga catcatctac
     3181 aactaccgct atgccggtgg cgatgtgagc atgtatgagc taaccggcaa acagcttaaa
     3241 cagtatatgg aatggtcagc ggattacttc gacaccattc aagccggtga caaagactac
     3301 cgctacaacg ctgtgcgggg taaatctaaa tacgttacct tcgacctatt cggcggcgta
     3361 agctacaaca tcgacctacg caatccaagc ggtagcaaaa ttgtcgatct aaaactggca
     3421 aacggcagtc taatcaccga tgacggcaaa tacaaagtgg gaatgaactc ctaccgcttt
     3481 ggtcagctca ccaaaaaagg cggcatctgg gaaggacagt aaatccccgt gatttgggaa
     3541 tccaaagtcg ccatgggggc tgaaaaaggc acaatccaaa atatgctgat tgattacatc
     3601 accaacgtca aaggcggaaa aatcgaaggc aaatcgcata accgctgggc gattatcggc
     3661 ttaaattaac gaaagggaaa cactatgaac ttaaaacaat ctcttattga aaataactct
     3721 attttgctca atcaatcagc ggcgaattgg gaagacgcaa tcaaaatcgg cactgattta
     3781 ttagtcaaag ccggtacgat tgaaccacgc tattacgata atattgtaag caaaatcaaa
     3841 gagatggggc cttatattat tcttgcaccg ggcttggcaa tgcctcacgc ccgtccggaa
     3901 gaaggtgtga ttaaaacctc tttcgcttta gtgacttttg acaccccgat ttattttgag
     3961 ggcgaagatg agccggttca cgttatgcta acccttgcag ggagtgactc tgatcagcat
     4021 atgcaaggct tggtagaaat cacccaagtg ctagatgacc cagagagcga cacaggtgtt
     4081 gatttagata aaatccgccg ctgtaaaacg gctgaagaag tgtatgcagt aatcgatcag
     4141 gcattagcct aatattctac aagcggttca aaaacatcaa tattttgcaa atagaggaat
     4201 acaattatgt ccaaaccatt attacaaatt gcccttgatt ctctttcact ggaaaaagcg
     4261 gtggcggatg caaaacaagc agaaaaccaa gtcgaaatta ttgaatgcgg tactattctt
     4321 gcttttgctg agggtatgaa agccgtttcc accttgcgtg tattgcaccc aaatcacatt
     4381 attgtgtgcg acttaaaaac caccgatggc ggtgcaattt tagctaaaat ggcatttgaa
     4441 gccggtgccg actggctcac ggtttcggct gcggctcacc ctgcaaccaa agcggcttgc
     4501 aaaaaagtgg cggacgaatt taacgctgct cacccggagc taaaagtgaa aaaagagatt
     4561 caaattgaaa tctacggcaa ctggacggtg gaaaaagatg ccaaagagtg ggtagaatta
     4621 ggggtaaccc aagcgattta ccaccgctcc cgtgatgcgg aactagcagg taaaggttgg
     4681 acaacggaag atgttgagtt aatgaaacag ctttctgact taggcattga attatctatc
     4741 accggcggta tcgtaccgga agatattcac ctgttcaaag agatcaaaaa cgccaaagcc
     4801 tttattgcag gccgtgcttt agtcggtgaa aaaggcaaac aaactgccga agccattcgt
     4861 gtggagattg ataaatactg gaactaatcc ggcattgaaa cccaataaaa atggcgttct
     4921 ctcaaccgga acgccatttt ttatctcatt ttttctattc ttgcaaggcc gatattttcc
     4981 acaatctcgc tacattttcg gcagttgaaa tcaggttctc tttgcctgat tttaacaccg
     5041 cttctaaatt gctgacctgt cgaataatcg gaaataccgc atcaatgccg tgttggtaca
     5101 ccacagggta atcttctttc aatgagccaa ctatcgcaat caccggcttg ccaaactgct
     5161 tagcgacttt cgccacccca atcggggttt taccggcgat agattgagcg tccattcgcc
     5221 cttcccctgt caccaccaaa tccgcatcgg caagtttctc agcaagatcg gttgcctcaa
     5281 gaataatttg cacgccggaa cgtaatgtta cgttaggcag tagcagtaaa ccaccgccca
     5341 ttccaccggc tgcaccggca ccggctttct cggcaatctc aatgcctaat tgggatttta
     5401 cggtttcggc aaaatgcaac agggcgtggt cgagcatttt aaccatttcc ggtgtagctc
     5461 ctttctgtgg cccaaaaatt gccgaagccc ctcgctcgcc acacagcgga ttatcgacat
     5521 cgcaagcaac ctcaaattcc acttgcttta agcgtgaatc caaaccgctt aaatcaatct
     5581 gctgaatttg gcttaatgcc tcgccaccaa agccgatttc ccgctgttcg gcatttagaa
     5641 atttcgctcc taaggcttgt agcattccga caccgccatc gttagtcgca ctgccgccaa
     5701 tgccgagaat gattttttcc acccctaaat ctaaggcggc tttaattaac tgccccgtgc
     5761 cgtagctggt ggtaaccagc ggatttcgtt gctccattgg cactaaatgc aagccacttg
     5821 ccgccgccat ttcaataaag gcggtttttt gatcccccga caagccaaaa aagccctcca
     5881 cctcatttgc aagcggtgca attacgctga ttttttgcaa actgccgtga gtggcatcaa
     5941 ccagcgactg taccgagcct tcgccaccgt ctgccatcgg tacgagctga tactccgcct
     6001 cagggaaaac acgggcaaaa ccctgttgaa ttgcttgagc cacttctaat gcggtcaaac
     6061 tctctttaaa tgaatccggt gcaatcacaa ttttcatcgt caatccttag agtaaaatca
     6121 atgaaagcag ataaaccgtg agcataccca ccacacccat aatgaaagtt agggtagttt
     6181 gcgtacgata gccttgttgc ggagtcagtt tagtaaagtt tgttaccacc cagtagtagc
     6241 tgtcattggc gtgggaaacg cacattgagc cagccgcaat cgccattacg gttaaggctg
     6301 ccgccatttc actggttagc cctaaggcgt tcattaatga gtccggtgcg ttgaacattc
     6361 ccataatgga ggcggtggtg ataattgcca ccgttgagct gccttgtgcg gtttttaaaa
     6421 ttgccgaaat caggaacggg aagaaaatcc ctgctgtact gataatatga gcgttttgct
     6481 tgatgtaatc cacaaagccg gcttgagtaa tcacgttacc tagcacacca ccggcggcgg
     6541 taataaagag aattgggccg actaatttca gggtatcatt ggttaagctg tcaaattccg
     6601 ccattttacc gcttgaaacc agtaggaaaa tagcgaagat caccccaatt gctaacgcaa
     6661 taatcgggtt gccgacaaat tgtaggaata cgccgaaatc gccacttaca ccggcaattt
     6721 tggcaatcga gccgatagcc attaagataa tcggcataaa aatcggggca aagcttaaaa
     6781 acccacttgg taatttgccg tattgtttga tcagatcttc atagctttgg ctgattactt
     6841 gatccgcttg agcttcttcc atcacgctga cttgtttgcc aacatatttg gcaaagaagt
     6901 aactggcaat caacacagga atcgaaacca caaagcccat tccgatcaca agcaggagat
     6961 tatggcttaa accaacagca ccggctgctg caatcgggcc cggtgtcgga ggaataaaga
     7021 cgtgggaggc atataaaccg gcacttaacg ccaccgccat tcccaccgga ttggcaagaa
     7081 tttttttgcg aatagcttca cgaatcgggt ttaacaccac aaagccgcta tcacagaaca
     7141 ctgggatacc aaccacccag cccataatca acattgccag ttcagggcgt ttttgcccca
     7201 ccacttttac caccatatcg gctaatttga gggctgcacc ggttttttct aaaatcgtgc
     7261 cgataatcgc cccaaaaata atcacgatac cgatactttt gaaggtatta ctaaaacctt
     7321 cgcccacaat agttggaatt ttggcaagcg gtaaacctgc cactaatgca agggctatcg
     7381 aaatcgacat taaggctaag aacgggtgaa ctttccactt cgcaatcata taaatcatta
     7441 tgatgatagc gaccagaaag atcagaataa gtgcaatacc tgacataata agtctcctca
     7501 ttgtagaaaa atgaacttat tattcggtat ttattgctaa aaagatttag ataaatttgc
     7561 aaaaaatttg ttaaaaacga ccgcttgttt gtatattttt acaattttta cgacagaacc
     7621 gctccaagat acagcacaaa tttttgctct atgttattga aagataaacc agttatctgc
     7681 tcaatcttct ctaaacggta acgtagcgta tttgggtgaa taaacaattt tttggcagcg
     7741 tgatccagat cacaatttgc gaaaaaatag taacgcagac ttttcagtaa cacctgtttt
     7801 ttatcggaaa ccagtaaagc ttggaacggc gagagcaagg ttttcgcttc ccaagagtgg
     7861 ctgaaactgt gcaagagggc cggcagttta aaatcttcaa aatgaataat ctgcttacgg
     7921 ctttggatct gctcggcata attgagggta tggcaggcgg tttggtagga aatatgggtt
     7981 tgcgataaat tttcgaccgc cagcccaacc accgttttga aggaaatatc cggatcgtta
     8041 agtttgttta gtgcattgcg gattaacgat ttttcgttgg ataaatgatt cagcaaggca
     8101 attttatcta acccaatcac ggcggtgagt aggctcggga aataatgttc gaaaaaatca
     8161 atcaggcgtt ggagtttttc cgcagtagag ccgtgaattt taatcaccat caccgacagc
     8221 ggttttgcaa aatcttgccc gaaaaagacc gcttgttgct ggatttctgc tgtgcttagg
     8281 ctacctttga gcaaggcccg cacaaactct tcccgatagc ggcgttgcca acgttcctgt
     8341 tccaactcaa acgcttgctg cataatcagc tccgccgcca ttttcaccaa ttgagcatat
     8401 tgccgaactt gttgtggctg ccctgaaatc cccactacac caatggttga gcctaaatag
     8461 tgaagcggta agttaatgcc cgctttcact tcatcgcacc actgttttgc aagattttca
     8521 tcaatttcga ccgcttgatc gttgcgtaac gcaatcaccg ctcctgtgtg tcgttgcccg
     8581 atacgaccga catcgccgga agcaataatc accccttcac tatccatcac attgacggag
     8641 ttgggaataa tctgcatcgt gcgcttgacg atgcggtcgg caatcgcttg gttgagtttc
     8701 attatatgat tcctactcat tcccaatact atgaaaaatc cctctttcga gggatttgca
     8761 aattatctac gcttccactt cctgagaata gatcatagcg tgaagttatt ttgccacagt
     8821 cgctttaatt aatttttccg ctttggcaag gttgttttct acatcagcat aatcggtatt
     8881 agcgtgagcc accacttgat cggcacgatt taacattact tcgaccttgc ccttgttcgg
     8941 ttcggtaatt aacactttta acggtaattg caacgctaac atcggatctt tcaccattaa
     9001 tggcgtaccg gctttcggtg tgccgtaaac caatacggtt gccggttgca tttctaagcc
     9061 ggcttgtttt gccgccgctt ggtgatcgat ttcggcaaaa atcgtcattc ctttttcttt
     9121 taaggtgttg gttaaagttg tgactgtagt ttggaaatca aatttacttt caaataccac
     9181 cggtttgaca tcggcaatat ctgccattgc cacgctgctc attgctaatg cagaaactgc
     9241 gactgctttt aagttcattt cttttctcct caaatagatt aaataatccc ttgttcttcc
     9301 aacttgccta agaaataagg catctgttta cgccaagtcg gccagtcatg gtcaatatca
     9361 aagccccagt agtcaaacca agcatcgatc ccttttgcgt taaaagcctc ttgtaatcgg
     9421 cgggtgtctt caatatgctg ttcttcccac gcaccttgtc cgactgcaat cacatagtga
     9481 ttttggcggt agcggtctaa gaaccaatcg tcattttgac cccatacata atcaatcggc
     9541 gagttaaaat aaaccgcttt atcgccataa aactcaccac tgaaaaagcg agcgtcataa
     9601 acaccgctta aggcgatggc aatatcaaac agatccggat gacgtaaggc aaagtttacc
     9661 gtatggaaag cccccatact acaaccggtg gcaatcatcg tgccgttcca gtgcgattca
     9721 tggcggatta acggcactag ctcgtgaata atataacggt cgtaagcatt atgagctaat
     9781 gccatatcgt gtccggattt atgtttagat aaccaagatt ccgcatcgta agaatcaggc
     9841 gtgtaaaatt tgattaagcc acgttcaata aaggaacggc aagcctcaat cattccaaaa
     9901 ttaccatact cgttttcatt gccgccggag gaagggaaaa caataaccgg tttacctgcg
     9961 tgtccgtaaa cgttgaacga catttcacga cctaattctc cactccagtg gcttcttttt
    10021 tcaaaatgca tacttcacct cttactgttt agcttgtgca aattgtgcaa tttcacgcat
    10081 ttgctccatt gtttcggtac gggctaaaat gccttgttcg cccatcactt tggcaaatac
    10141 gcccggtacg ctttgcacgc tgataatatt gccggcaaat ttctcacaaa cagcttcaat
    10201 cgaattcaca taattttggt ttgccttgcg ggaaatataa accacgttcc aagggtgctg
    10261 aatatcggca tagaatttgt tttctttcac aatattggca aattcacgga acacatcgaa
    10321 atcgttggcg tagttccaca tatcaatagt taagccaccc ggcggacggc agttgatttc
    10381 gagtggtaac aactcttctt ttttgctccc tttaacacgg aagaactcaa aatggaaaaa
    10441 acgctctttt acgttaaagg ctttcacaca ttgtttgccc atttccacta attttggcga
    10501 aatttcacat gggacatagt agaacatatc gccatctttt gaaacggtat ctaataccgc
    10561 ttctgaatat tcaaggctgg agtagaaaac gatattgccc tctttatcgg ttaaaccgtc
    10621 aaaggtaata atatcgccgt caataaactc ttccataata tattcaaccg ttggcgtttt
    10681 ataaccgaag aaagcttcta actcttccgc agttttgatt ttgtaagtat cgcttgcccc
    10741 aacccctgaa tttggcttga taatcaccgg gaatttaagc tgttttgcta atttgcgggc
    10801 atcttcatca tctttaaata ctcgcccttg tgccactttc aagccggttt tgcggaatac
    10861 ctctttcatt tgggctttgg ttttaattga gagcatatca tcgctcttat aaccaaacac
    10921 attgaaatcg gtacgcaatt tcgcatctaa ctccagccaa tattcattgt gcgattcaat
    10981 gcggtcaatt cgcccgtatt tatgggcaaa gtacgcgacc gcacgataaa cttgttcgta
    11041 atcttccata ttatctacac gataatattc agtcagggaa tgacgcagat tttcgctcaa
    11101 tgattcataa ggggcatctg caattcccaa tgtattaaaa ccggcttcac gcaaacgaat
    11161 ggcaaaggtt tcaaagttcg ttgggaagtg cggggaaatc atcacaaaat taagtggtct
    11221 agacatagtt
//
LOCUS       DANLVT010000078        11058 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.078, whole genome shotgun sequence.
ACCESSION   DANLVT010000078 DANLVT010000000
VERSION     DANLVT010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11058
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.078"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            186..1256
                     /gene="dhaK"
                     /locus_tag="PXC99_001728"
     CDS             186..1256
                     /gene="dhaK"
                     /locus_tag="PXC99_001728"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HDL5418165.1"
                     /translation="MKKLINSIETVLDEQLSGFVKAHSDLTLNTEPVYIYRTTPSNQP
                     KVALISGGGSGHEPMHAGFIGKGMLDGACPGAIFTSPTPDQMFECGLAVDRGEGVLLI
                     IKNYTGDVLNFETATELLADSGVKVATVLVDDDVAVKDSLYTAGRRGVANTVLIEKLL
                     GAAADKGYNLSELAKLGHQLNNNGHSIGIALSACTVPAAGKPSFTLAENEMEFGVGIH
                     GEPGIERRPFENLDSTVKQMFETLIAHGDYQRKIRHWNTQTQQWDEIEESKVALKKGD
                     RVIALVNNLGAVPLSELYAVYDALEKECQTFGLSIERSLVGSYCTSLDMQGISITLLK
                     VDEDILKLWDAPVNTPAMRWGE"
     gene            1277..1903
                     /gene="dhaL"
                     /locus_tag="PXC99_001729"
     CDS             1277..1903
                     /gene="dhaL"
                     /locus_tag="PXC99_001729"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase ADP-binding subunit
                     DhaL"
                     /protein_id="HDL5418166.1"
                     /translation="MTISKQQILKWLENCQQVMTEKRDYLTELDTVIGDGDHGLNMQR
                     GFSKALEKAHTVQDKDIGTLLKTVGMTLLSQVGGASGPLYGSFFIKAAQGATGKEQLS
                     FNELLALLQQGAEAIVQRGHAQVGDKTMCDLWLPLLEDLAQADSTQPIAQILLQAVEK
                     AENFANQTAPLMAKKGRASYLGERSIGHKDPGATSSYYIFKALAEALQ"
     gene            1913..2320
                     /gene="dhaM"
                     /locus_tag="PXC99_001730"
     CDS             1913..2320
                     /gene="dhaM"
                     /locus_tag="PXC99_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase
                     phosphotransferase subunit DhaM"
                     /protein_id="HDL5418167.1"
                     /translation="MVNLVIVSHSAKLAEGVGEILAQMAQGGCKIALAGGIEDTSNPI
                     GTDAVKIMQAIESVFSPDGVIVFVDLGSAILSTQTAIDLLEPELAEKVIISYAPLVEG
                     AFAAVVAASAGDSLEAVLNEANEAAALKQEQAN"
     gene            complement(2360..3205)
                     /locus_tag="PXC99_001731"
     CDS             complement(2360..3205)
                     /locus_tag="PXC99_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone YbbN"
                     /protein_id="HDL5418168.1"
                     /translation="MDYFVNVNEQNFSEVWAAAAQVPTVFHFISPREVASLEMDALLR
                     RISDENPNQFLLATVNCDEQQALAAQFRIQQIPTLYLFAGGQPIDAIQGAVSEQELRI
                     RLANILPKEEELKFQQALELLQDQRYTEALPLLKSAWEMTDKKNSDFALLYAETYIAM
                     KSVEEAREILKAIPIQDRDSRWHGLQAQIELLEQASESPELQQLQADYANSKTPEIAI
                     KLANQLHQAHKNEEALTLLFDWLKSDLNVANGEVKSQFLAILSALGTDPIVPKFRRQL
                     YSLLY"
     gene            complement(3249..3575)
                     /gene="glpE"
                     /locus_tag="PXC99_001732"
     CDS             complement(3249..3575)
                     /gene="glpE"
                     /locus_tag="PXC99_001732"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase GlpE"
                     /protein_id="HDL5418169.1"
                     /translation="METTFKEISPQQAWELIENEGAVLADVRDARRYVYSHPQDAFHL
                     TNQSYGKFLDEVDYDEPVVVICYHGVSSQSTAQFLIEQGFENVYSVKGGFEAWERNGL
                     PIETSY"
     gene            3726..4184
                     /gene="exbB"
                     /locus_tag="PXC99_001733"
     CDS             3726..4184
                     /gene="exbB"
                     /locus_tag="PXC99_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HDL5418170.1"
                     /translation="MEQLFQFLEHHTDFVILGLLGLLSVICLWKAIERIMFYSKVDIS
                     KYDTLEELDIDLTHNLTTISTIGSNAPYIGLLGTVVGILLTFYHLGQSGGDIDAASIM
                     VNLSLALKATAVGILVAIIAMVFYNGFGRKVEENKLKWLALQSKKPHQAV"
     gene            4221..4658
                     /gene="exbD"
                     /locus_tag="PXC99_001734"
     CDS             4221..4658
                     /gene="exbD"
                     /locus_tag="PXC99_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HDL5418171.1"
                     /translation="MKKFDEINIIPFIDIMLVLLAIVLVTASFISQGKIQVNVPKAST
                     TQPMKADDLAKLLTITENNEFFFNDQAITKEQLIAEVATWDKSQKVSLKVDGAVAFEK
                     FVELTDILSANEIKNVAIITKKETAPAPSSTPGSPAQVPAVAP"
     gene            4674..5585
                     /locus_tag="PXC99_001735"
     CDS             4674..5585
                     /locus_tag="PXC99_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HDL5418172.1"
                     /translation="MKKKHSRIGLLASLAIHTALIGGTFAWLHNHKVEKIAEQNSLSM
                     EMVAALLEQPQVAVAPDPITEEVKEIEPEKAEVPPEPKLTPEPTPEPEAIPDPTLNPK
                     KEKPKEEKRKERHHHKHKHRHKEKREELQEQEKPKDKPKERPKHHHKHIKALERGPEI
                     KQGIVAKAIPNAAEGEKVVAGVVGGQKNGSPNSTSTTGSANTGASSGNASELAAYKVA
                     LQRALQRKANNSYPQREKMMRKTGTVTIKFTITSSGSITNVSVLNSSGNSNLDNAAVR
                     SAEGLSMPPPPAGFPPTVTVPVRFALE"
     gene            complement(5654..6535)
                     /gene="cysZ"
                     /locus_tag="PXC99_001736"
     CDS             complement(5654..6535)
                     /gene="cysZ"
                     /locus_tag="PXC99_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate transporter CysZ"
                     /protein_id="HDL5418173.1"
                     /translation="MSSVFSEPQNQVGLGFHYFIYGWRLLLQRQFLPFVIFPILINTV
                     LMVGLIWGFFANIGGLLDMLLPSWLEWLSFVLIPLIFLMILVGFYFAFTTLANFVAAP
                     FNALLAEKVELQLTGEPLGDMSFGAMLKDVPRMLKREWQKMMYSIPRLIALFVLGFLP
                     VVGQTVAPVLTFIFGAWLIAIQYCDYPFDNHKISFQRMRNALSQSRTLNFTFGALVSL
                     FTMIPFVNLVVMPVAVCGATALWVKEYRNFFLNNQTGEFSKADYTFTKVNSTSLSTET
                     RTGEVSPNVRNGDIRKQ"
     gene            6647..7549
                     /gene="zipA"
                     /locus_tag="PXC99_001737"
     CDS             6647..7549
                     /gene="zipA"
                     /locus_tag="PXC99_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA"
                     /protein_id="HDL5418174.1"
                     /translation="MELHIIFFILAGLLIAVLIGFSLWSARREKSNIFSNTFSTRPIA
                     VPPQNNKMSNSIPTSLQPQNEDYQAMSVPEENPQQIQQEVESSLQNIKISLPGGNPQQ
                     QPEQIQPIQSVAEPTVSTYGQKISNQQHIQYNTPDFANPMVNTVVEETPQAVAIEPQE
                     TQSAEEENPFVTLYLYAPQNEAFRGDFVVHYLEEVGLRFGEHQIFHRHQHIDDSLSPI
                     IFSAANLMNPGTFDLNNISNFATAGLVLFMQLPTEGNDVANMKLLISNAEHLAASLGG
                     FLYDDNQQPFGEESRQRYMQRVMH"
     gene            7614..9671
                     /gene="ligA"
                     /locus_tag="PXC99_001738"
     CDS             7614..9671
                     /gene="ligA"
                     /locus_tag="PXC99_001738"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HDL5418175.1"
                     /translation="MSLFNQTSLFEENATPELVEKIETIRQTLRQYEYEYHVLDNPSV
                     PDAEYDRLMNELKNLEWQHPELISADSPTQRVGAKPLAGFAQVTHEIPMLSLDNAFSD
                     EDLDGFLRRMESYITASPSQLEFCCEPKLDGLAVSILYENGILTRAATRGDGTTGEEI
                     TANIRTIRNIPLKLNTTNPPARLEVRGEVFMPQSGFNELNEKALAKGEKTFANPRNAA
                     AGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATHFERLQWLKSLGIPVNNEIRLV
                     QGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIALQEQLGFISRSSRWAIAYKFPAQ
                     EEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERLGIVIGDTVI
                     IRRAGDVIPQITGVMLERRPENAKKIEFPTACPICHSAVTRVEGEAVARCTGGLFCEA
                     QRKEALKHFVSRKAMDIDGVGEKLIEQLMARELIETPADLFKLDHTTLMRLERMGEKS
                     AQNALNSIEKAKNTTLPRFLFSLGIREVGEATALNLANHFGSLEAIRQATFEQLKEVQ
                     DVGEVVANRIVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDKNVVLTGTLT
                     QLTRDEAKALLQSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIEL
                     TQH"
     gene            complement(9734..11002)
                     /locus_tag="PXC99_001739"
     CDS             complement(9734..11002)
                     /locus_tag="PXC99_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HDL5418176.1"
                     /translation="MTQQIEHSTWQSKFAAMGPGILMASAAVGGSHIIASTQSGAIYG
                     WQLAIIILLANLFKYPFFRFGVQYTLASGKTLLEGYKEKGKFYLIIFFILNVFAAMIN
                     TAAVAIVSAAILKFIFSALGIPLDLSIPMAGTIVIVVTWGILLLGQYKFLDTLSKWIM
                     IALTISTVSAVIIAALKGGVEIAPDFVEPSPWNLAALVFIVALMGWMPAPIEISAINS
                     MWVIAKKRLSKVNYEDGIFDFNVGYIGTAILAIVFLALGALVQYGSGEKVEQAGVAYI
                     AQLIKMYAFAIGDWSKLLIAFIAFMCMFGTTITVIDGYSRANAEALRLISGRKQHSQT
                     ELSIWMTVTALIGILIISQFMSDVAKMLQFAMISSFVSTPVFAWLNFSLVLKGEHRAK
                     GWLFWLAVIGLIYLTSFTLLFLAQQFKLIG"
BASE COUNT         3509 a         2343 c         2237 g         2969 t
ORIGIN      
        1 tggtgtgttt agtggtcata atgaatcctc tgaataaata ttaatgttta ttttagccta
       61 aatttcagtt caactctatt ttcgttttcg ctcaactttt ttcaattttg tgacaaagtt
      121 aacagaaatc cgactgtgtt tcttgtaaat tgtgacagtc taattcattt aaaaggggca
      181 aaaagatgaa aaaattaatt aattcaatag aaaccgtctt agatgagcaa ctttctggtt
      241 ttgtgaaagc acattctgat ttaacactta acacagaacc tgtctatatt taccgcacaa
      301 cgccaagtaa tcaacctaaa gtagccctta tttccggtgg tgggagtggg cacgagccaa
      361 tgcacgccgg ttttatcggt aaaggaatgt tagacggagc ttgccccgga gcaatcttta
      421 catctccaac gccggatcaa atgtttgaat gcggtttagc ggttgatcgt ggcgagggtg
      481 tattgctaat tattaaaaac tataccggtg atgtgctgaa ttttgaaaca gccaccgagc
      541 tacttgcaga tagcggtgta aaagtcgcaa ccgtgttggt tgatgatgat gtggcagtca
      601 aagacagttt atatactgcc ggccgccgcg gtgttgcaaa tacagtatta attgaaaagc
      661 tgttaggagc tgcagcggat aaaggctata acttatccga attagccaaa ttagggcatc
      721 agttaaacaa taacgggcat tctatcggaa ttgccttatc tgcttgtact gtgccggctg
      781 ccggtaagcc atcatttact ttagctgaaa atgagatgga atttggggta ggtattcacg
      841 gagaaccggg cattgaacgt cgcccctttg aaaatctgga tagtaccgtg aaacaaatgt
      901 ttgagacctt aattgctcac ggcgattatc aacgtaaaat tcgccattgg aatacacaaa
      961 cccaacaatg ggacgaaatc gaagaaagca aagtggcatt gaaaaaaggt gatcgtgtta
     1021 ttgctttagt taataactta ggagcagtgc cactatccga actttatgct gtttatgatg
     1081 cgttagaaaa agagtgccaa actttcggct taagcattga acgcagtctt gttggatcat
     1141 attgcacctc gctggacatg caaggtatct ctatcacatt actgaaagtt gatgaggata
     1201 ttctcaaact atgggatgct ccggtaaata caccggcaat gcgttggggt gaataattag
     1261 attgaaagga taagttatga caatatcaaa acaacagatc ttaaaatggc ttgaaaattg
     1321 ccaacaggta atgactgaaa aacgggatta tttaaccgaa ttggataccg ttattggcga
     1381 tggcgatcac ggtttaaata tgcagcgtgg atttagtaaa gcacttgaaa aagcccatac
     1441 cgtgcaagat aaagatatcg gcaccctgct taaaaccgtt ggaatgacat tattatcgca
     1501 agtaggggga gcgagcggcc ctctctatgg ttcatttttt attaaagcgg ctcaaggtgc
     1561 tacaggcaaa gagcaactga gctttaacga gttactggca cttctacagc aaggagcaga
     1621 agctatcgta caacgtggac acgcacaagt tggcgataaa acgatgtgtg atttatggct
     1681 gccattactc gaagacttag ctcaagccga tagcactcaa ccaattgctc aaatcttatt
     1741 acaagcggtc gaaaaagcag aaaattttgc aaatcaaacc gctccattaa tggcgaaaaa
     1801 agggcgtgcc agttacttgg gcgaacgcag tatcgggcat aaagatccgg gagcaacgtc
     1861 cagctactat atttttaaag ccttagctga agcattacag taggaggggt aaatggttaa
     1921 tttagtgatt gtttcacata gtgctaaact ggcggaaggc gtgggggaaa ttttggctca
     1981 aatggcacag gggggctgta aaatcgccct tgccggcggc attgaggata cctcaaatcc
     2041 tatcggcact gatgcggtaa aaataatgca agcgattgaa tcggtattta gcccagacgg
     2101 tgtgattgtg tttgtcgatt taggcagtgc aattttaagt acccaaaccg ccatagattt
     2161 actggagccg gaacttgccg aaaaagtgat cattagctac gctcctttag ttgaaggtgc
     2221 ttttgctgct gtagttgcag cctctgccgg cgatagttta gaagcggtat taaatgaagc
     2281 gaacgaagcc gctgctctta agcaggaaca agccaattag taaaaatgcc gtatcgaaaa
     2341 atacggcatt ttagttttat tagtacaata gtgaataaag ctgtcttcta aatttcggca
     2401 caatcgggtc tgtacccagt gcagataaga ttgccagaaa ttggcttttt acctcgccgt
     2461 tcgctacatt taaatccgat tttaaccaat caaaaagtaa cgtgagtgct tcttcatttt
     2521 tatgagcttg gtgtagctga tttgccaatt taatcgcaat ttcaggggtt ttgctgttcg
     2581 cataatccgc ttgaagctgt tgtaattcgg gcgattcgct ggcttgttcc aataattcga
     2641 tttgggcttg caaaccgtgc caacggctgt ctctgtcttg aatcgggatc gctttaagga
     2701 tttcacgagc ctcttccacg cttttcattg caatgtaagt ttcggcatag agcaaagcga
     2761 aatcgctgtt tttcttatcg gtcatttccc acgctgattt cagcagcggc aaggcttcgg
     2821 tataacgctg atcttgcaat aattccaagg cttgttgaaa tttcagctct tcctctttcg
     2881 gtaaaatatt tgccaaccga atccgtaatt cctgctcact tactgcacct tgaattgcat
     2941 caatcggctg accgccggca aacaaataga gcgttggaat ttgttgaatg cgaaattgag
     3001 cagccaatgc ttgttgctca tcacaattta ccgtcgccaa taaaaattgg ttagggtttt
     3061 catccgaaat acgacgtagt aaggcatcca tttccaatga agccacttcc cttggcgaaa
     3121 taaaatgaaa caccgtcggc acttgtgccg ctgctgccca tacttcacta aaattctgct
     3181 cgtttacatt tacaaagtag tccatacaaa accttcttaa gctaaaaatt actttttata
     3241 ttgtagcatt aataagaagt ttcaataggt agcccgtttc tctcccacgc ttcaaaacca
     3301 ccttttacac tataaacatt ctcaaaccct tgttcgatta aaaactgtgc tgtactttgg
     3361 ctactcactc cgtgatagca aatcacaacc accggttcgt cataatcgac ctcgtctaaa
     3421 aacttaccat aactctggtt ggttaaatga aacgcatcct gtgggtggct gtaaacataa
     3481 cggcgggcat cacgcacatc ggcaagcacc gcaccttcgt tttcgattaa ttcccaagcc
     3541 tgttgcgggc taatttcttt aaatgtagtt tccataatca ctttccctca aaaaacgtgc
     3601 aactatacca taaaattcta aaaagaatgg ctattattcc aagttgaaaa tttgatgttt
     3661 gtcagatata attgcaaact attttcaaat gcactgattt aaaactacca cagtttgagg
     3721 attttatgga gcaattattt caatttttag aacatcatac tgactttgtt atattaggat
     3781 tactaggctt attaagcgta atctgccttt ggaaagctat tgaacgtatt atgttttatt
     3841 ccaaagtaga tatttcaaaa tacgataccc tcgaagaatt agacatcgat ttaacccaca
     3901 atttaactac catttcgact atcggctcta atgcccctta tatcggctta ttaggaaccg
     3961 ttgtcggtat tcttttaact ttctatcatt taggtcaatc aggtggtgat attgatgcgg
     4021 cctctattat ggtaaacctt tctttagctc taaaagccac tgctgtcggt atcttagtgg
     4081 caattattgc aatggttttc tacaatggtt ttggtcgtaa agtggaagaa aacaaactga
     4141 aatggttggc attacaatca aaaaagcctc atcaagcggt gtgatttagt ccattttttg
     4201 caaattaata aggcagaaca atgaaaaaat tcgatgaaat caacatcatt ccatttattg
     4261 atattatgtt ggtattactg gctatcgtgt tagttaccgc ctctttcatt tctcagggta
     4321 aaatccaagt aaatgtaccg aaagcaagta caacacagcc aatgaaagca gacgatttag
     4381 cgaagctttt aaccattacc gaaaataatg agtttttctt taatgatcaa gcaataacta
     4441 aagagcaatt aattgctgaa gttgccactt gggataaaag ccaaaaagtg tcactcaaag
     4501 ttgatggtgc agtcgccttc gaaaaatttg tggaattaac cgatatcctt tctgcaaatg
     4561 aaattaaaaa tgtagcaatc attactaaaa aagaaactgc tccagcacct tcaagcacac
     4621 ctggtagccc tgcacaagtg ccagcagtcg caccttaaat agggtaaaca ggtatgaaaa
     4681 aaaaacattc tcgtatcggc ttattggcat ctttggctat tcacactgcc ttaattggtg
     4741 gcacttttgc ttggttacat aaccacaaag tggaaaaaat tgccgagcaa aactctcttt
     4801 ctatggaaat ggtggcagca ttattagagc aacctcaggt tgccgttgct ccggatccta
     4861 ttaccgaaga ggtcaaagaa atcgaaccgg agaaggcaga agtaccacct gaacctaagc
     4921 ttactccgga gccaactcca gagccggagg caattccaga tcctacgcta aatccgaaaa
     4981 aggaaaaacc gaaagaagaa aagcgtaaag agcgacacca ccataaacat aagcatcgtc
     5041 acaaagagaa aagggaagag ctacaagagc aagaaaaacc gaaagataag cctaaagagc
     5101 gcccgaaaca tcatcacaag catattaaag cattagagcg cgggccagag ataaaacaag
     5161 gtattgtcgc taaagcgatt ccaaatgcgg ctgaaggtga aaaagtggtt gcgggggttg
     5221 ttggagggca aaaaaacggt tcaccaaatt caacctcaac tacaggttca gcaaatactg
     5281 gggctagcag tggtaatgcc agtgaacttg ctgcttataa agtcgcatta cagcgagcat
     5341 tacagcgtaa ggcgaataac tcttaccctc agcgtgaaaa aatgatgcgg aaaaccggta
     5401 cagttacgat taaatttacc attacatcgt ccggttcaat tacaaatgta tccgtactca
     5461 attcatcggg aaatagtaat ttagataacg ctgcggtacg cagtgcagaa ggtttgagta
     5521 tgcctccgcc accggcaggc ttccctccta cggtaacagt accggtaaga tttgcccttg
     5581 aataaaaaca gccctcaaaa gcaatgtact tttgagggct ttttattgca aaaaattgac
     5641 taaaaatgac cgcttactgc ttgcgaatat cgccatttct cacattcgga ctcacttcac
     5701 ccgtacgagt ttctgtgctt aacgaggtag aatttacttt cgtaaaagta taatccgctt
     5761 tgctgaattc acctgtttga ttatttaaga agaaattgcg gtactctttt acccataatg
     5821 ccgttgcgcc acaaactgcc acaggcataa ctactaaatt cacaaatgga atcatcgtga
     5881 ataggctcac taaagcacca aaggtaaaat ttaaagtgcg agactgcgac aacgcatttc
     5941 gcatacgctg aaaactgatt ttatggttat caaacggata gtcacaatat tgaatggcga
     6001 tcaaccaagc accgaagata aaagtcagca caggtgctac ggtttgccca accacaggca
     6061 aaaagcctaa tacaaaaaga gcaatcagcc ttggaatgct atacatcatt ttttgccatt
     6121 ctcgtttcag cattcgaggc acatctttta acattgcacc gaatgacata tcgcccaaag
     6181 gctcgccggt aagttgcagt tcgacttttt ctgctaataa cgcattaaag ggagcagcaa
     6241 caaagttagc caaggtagta aaagcaaaat aaaatcccac taatatcatc aaaaaaatca
     6301 gtggaatcag tacaaagcta agccattcca gccagcttgg cagtaacata tccaacaagc
     6361 caccgatatt ggcaaaaaat ccccaaatca gccctaccat cagcacggta ttaataagaa
     6421 ttgggaaaat cacaaaaggc aaaaattgac gttgtaacaa taaccgccag ccatatataa
     6481 aataatgaaa gcctaatccg acttgatttt gcggctcaga aaaaactgaa gacataatga
     6541 ttccttattt tctatcaaaa ttaattagaa atatggtaag ctacgcacat tattttcgca
     6601 aatatgaaaa tacatttttt attgattatt tgataaagag gacacaatgg aactgcatat
     6661 tatttttttt attcttgccg ggctactgat tgctgtacta attggattta gcctttggtc
     6721 cgctcgtcgt gaaaaatcaa atattttttc aaatacattc tcgaccagac ctattgctgt
     6781 gccaccacag aataataaaa tgagcaatag catcccaacc tcattacagc cacaaaatga
     6841 ggattatcaa gcaatgtctg tgccggaaga aaatccgcaa cagatacaac aggaagttga
     6901 aagctcgctg caaaatatca aaatcagttt gccgggcgga aatcctcagc aacagcctga
     6961 gcaaattcag ccgatacaat cggtagcaga accaacggtt agcacttacg gtcagaaaat
     7021 ttctaatcag caacatatcc aatacaatac gccggatttt gcaaacccaa tggtgaacac
     7081 agtggtggaa gaaacacctc aagcagtagc tatcgaacct caagaaaccc aatcggcaga
     7141 ggaagaaaat ccatttgtaa ccctctatct ttacgcacca caaaatgaag ctttccgcgg
     7201 tgattttgta gtacattatt tagaagaagt tggcttacgt tttggcgaac accaaatttt
     7261 ccaccgccat caacatattg atgattcatt aagtccgatt attttcagtg cagcaaattt
     7321 aatgaaccca ggaacctttg atttaaataa tatctcaaac tttgcgacag ctggtttagt
     7381 gctatttatg caacttccaa ccgaaggcaa tgatgtggct aatatgaagt tgttaatcag
     7441 taacgctgaa cacttagcag catcgttagg gggattctta tatgacgata atcaacagcc
     7501 ttttggcgaa gaatcccgcc aacgttatat gcaacgtgtg atgcactaat tgcgaaaaaa
     7561 ttaataaatc cgaccgcttg tacaagcggt cttttttgta gagaatttta ccaatgtctt
     7621 tatttaacca aacctcttta tttgaagaga atgccacgcc cgagttagtc gagaaaatcg
     7681 aaactattcg ccaaacattg cgtcaatacg agtatgaata tcacgtttta gataacccaa
     7741 gcgtacccga tgccgaatac gaccgtttaa tgaacgagct gaaaaatctg gaatggcagc
     7801 acccggaact gattagtgcc gactcgccga ctcaacgggt tggtgccaaa ccgctggcag
     7861 gctttgctca agtcacccac gaaatcccta tgctttcgtt ggataatgcc ttctccgatg
     7921 aagacttaga tggcttttta cgccgtatgg aaagctatat caccgcctct ccttcgcaac
     7981 tggaattttg ttgcgaacct aaattagacg gcttggcagt gagtatttta tacgaaaacg
     8041 gtatacttac ccgagctgca acccgtggcg atggcacaac cggcgaagaa attaccgcta
     8101 atatccgcac cattcgcaat attccgttaa agctcaacac gactaatcca cctgctcgat
     8161 tagaggtgcg aggcgaagtc tttatgccac aatcaggctt taatgagctg aatgagaaag
     8221 ccttagctaa aggcgaaaaa acctttgcca accctcgcaa tgccgcagca ggttcgcttc
     8281 gccagttaga tccgaaaatc acccgccagc gtccgttagt gctgaatgcc tacggaattg
     8341 gggtgtatga aagcgatgac gaactgccag ccacccattt cgaacgtttg caatggctga
     8401 aatcgcttgg tattcctgta aataatgaaa tccgcttggt tcaaggcaaa gctgctctct
     8461 tggcttatta tgcggagatt caggctaaac gcccaacatt aggctatgat attgatggca
     8521 cagtattgaa agtaaatgac attgccctac aagagcaact cgggtttatc tctcgctcct
     8581 ctcgttgggc gattgcgtat aaatttccgg ctcaagaaga aatgacaatc ctcaaagaag
     8641 tggacttcca agtgggaaga acaggggcaa tcacccctgt ggcgaaatta gagcctgttt
     8701 ttgtcgctgg cgtaacggta agtaacgcaa cgctacacaa cggtgatgaa atcgagcgac
     8761 ttggtattgt gattggcgat acggtaatta ttcgccgagc gggcgatgta attccgcaaa
     8821 ttacaggcgt gatgttagaa cgccgcccgg aaaatgcaaa aaaaattgaa tttccgaccg
     8881 cttgtcctat ctgtcactcc gctgttactc gggtagaagg cgaggcagta gcacgctgta
     8941 ccggtggttt attctgcgaa gctcaacgta aagaagcctt gaaacatttc gtttcacgca
     9001 aggcaatgga tattgacggc gtaggcgaaa aactaatcga gcagttaatg gctcgagagc
     9061 tgattgaaac gcctgccgat ctgtttaagc tcgatcacac taccctaatg cgattagagc
     9121 gaatggggga aaaatcggct caaaatgctc tcaacagcat cgaaaaagca aaaaacacta
     9181 ctcttcctcg ctttttattc tcgttaggta ttcgtgaagt gggcgaggca accgctctca
     9241 acttagccaa ccattttggt agcttagagg cgatccgcca agccactttt gagcaattaa
     9301 aagaagtgca agatgtgggc gaggttgttg ccaaccgtat tgtcagcttc tggcaagaac
     9361 cgcataatgt ggaagtggtg gaagatttga tcgctcaagg tgtacgttgg gaaaacgttg
     9421 tgaaagccga aattgtagat aacccgttaa aagataaaaa cgtggtctta accggcacgc
     9481 taacccagct cacccgtgat gaagccaaag ccctattaca aagtttgggc tgtaaagtct
     9541 ccggctcggt ttccagcaaa accgattact taatcgccgg cgaaaaagcc ggttccaagc
     9601 tggcaaaagc tcaagagttg ggaattcaga ttttaagcga gcaacaattt attgagctta
     9661 ctcaacatta acaaacaaag gggcagatga ttgaaatctg ccccttattc tatctattga
     9721 atgcttaaaa gcattaacca atcaatttaa actgctgagc taaaaacagt aacgtaaagc
     9781 tagttaagta aattaagccg ataactgcca accaaaataa ccagcctttt gcacgatgct
     9841 caccttttag cactaaagag aaatttaacc acgcaaaaac aggggtagaa acaaatgatg
     9901 aaatcattgc aaattgtaac attttcgcca catcactcat aaattggcta ataattaaaa
     9961 tgccgatgag tgcagttacc gtcatccaaa tacttaattc tgtttgtgaa tgttgcttac
    10021 gcccgctaat taaacgcaac gcttctgcat tcgctcgtga atatccatca ataacagtga
    10081 tcgttgtgcc gaacatacac ataaatgcaa taaatgcgat taaaagctta gaccagtcac
    10141 caatcgcaaa agcatacatt ttgattaatt gagcaatata ggcaacaccg gcttgttcta
    10201 ctttctcacc tgaaccgtac tgaactaacg cacctaatgc taaaaaaaca atcgccaaaa
    10261 ttgccgtgcc gatataaccc acattaaaat caaaaatacc gtcctcataa ttcactttac
    10321 ttaaacgttt tttcgcaata acccacattg agttaatggc agaaatttca attggtgcag
    10381 gcatccagcc cattaatgca acgatgaaca caagtgctgc taaattccac ggcgaaggct
    10441 ctacgaaatc tggagcaatt tcaacgccac cttttaaagc agcaatgatc acggcagata
    10501 ccgtagagat ggttaaagca atcataatcc atttagataa tgtatctaag aatttatatt
    10561 gccctagaag taaaataccc caagtgacca caatcacaat agttcctgcc attggaatgc
    10621 ttaaatctaa cggaatacct aaagcagaaa aaataaattt tagaatcgct gctgaaacaa
    10681 tcgccaccgc agctgtgtta atcattgcag caaaaacgtt aaggataaag aaaataataa
    10741 gataaaactt tcctttttct ttgtagcctt ccaataaagt tttaccgcta gctaaggtat
    10801 attgcacacc aaagcggaaa aacggatatt taaataaatt ggctaacaga ataataatcg
    10861 ccagctgcca gccataaatc gcaccagatt gtgtagaggc aataatatgc gaaccaccca
    10921 ctgccgcaga tgccatcaaa atccccggcc ccattgcagc aaatttactt tgccaagttg
    10981 aatgttctat ttgttgtgtc atatagcttt ccttatcaca ttactatcaa aacaagatgg
    11041 tttcattcta cttataaa
//
LOCUS       DANLVT010000079        11013 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.079, whole genome shotgun sequence.
ACCESSION   DANLVT010000079 DANLVT010000000
VERSION     DANLVT010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11013)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11013)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11013
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.079"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(61..237)
                     /locus_tag="PXC99_001740"
     CDS             complement(61..237)
                     /locus_tag="PXC99_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418177.1"
                     /translation="MTEEDKEYLQTKIENEGFEYAFVSYSDFEEVQDEKFHGLRKAYL
                     KARSELAEYIDIED"
     gene            complement(491..1192)
                     /locus_tag="PXC99_001741"
     CDS             complement(491..1192)
                     /locus_tag="PXC99_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418178.1"
                     /translation="MSTQISTQTISFNNQALITFEQNGTHYTAMKPICENIGLTWHAQ
                     YERIKRDEILSQGILIIRIPTNGGDQQMICLPIEYLNGWLFGIDINRCKPEIRETLIK
                     YKKECYQALHDYWFKGKAERSQIAPIVEPKIPMELTKKEWLRFASMWYALYNSLEVLA
                     TLEKPLRAIGSPFGATAYTHATEYQTTLGVMKRILEPMLADFEVDPFEEAHYHKALTT
                     LRQYQPKGLGGLVRI"
     gene            1737..1952
                     /locus_tag="PXC99_001742"
     CDS             1737..1952
                     /locus_tag="PXC99_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418179.1"
                     /translation="MQTEKRGRGRPKSGLTLQELQAKSDAKRGVRLKSFKFHEDFIAQ
                     LEQLAEQHGISQTQVIVQAVEQFSKGA"
     gene            complement(2004..2222)
                     /locus_tag="PXC99_001743"
                     /pseudo
     CDS             complement(2004..2222)
                     /locus_tag="PXC99_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014390712.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="KilA-N domain-containing protein"
     gene            2414..2602
                     /locus_tag="PXC99_001744"
     CDS             2414..2602
                     /locus_tag="PXC99_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418180.1"
                     /translation="MKELFKQWLINQDSPFINSCGVECILSKVDDRLNIINANEEETE
                     TLIEWRNAFLQDVSVFIA"
     gene            complement(2606..3070)
                     /locus_tag="PXC99_001745"
     CDS             complement(2606..3070)
                     /locus_tag="PXC99_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like family protein"
                     /protein_id="HDL5418181.1"
                     /translation="MQQLIKNIEQWAEDRNLINGSTPQKQMLKLMEEFGELCGGIARN
                     NPEMIKDAIGDLIVVCIIKAKQEKQPIYPVQFENHRLNGYRFDISVAVHCLYDIERIK
                     DRGKYSRFFGILHHLALINRFTLNDCLAHAYDQIKDRKGEMQAGIWVKEDDL"
     gene            complement(3054..3257)
                     /locus_tag="PXC99_001746"
     CDS             complement(3054..3257)
                     /locus_tag="PXC99_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418182.1"
                     /translation="MTDTERLDFIAQRKLDVRYSDLVDEFIIASYTKPHEQYFHWARN
                     ADLRTAIDEAMKEMRGLNNATTN"
     gene            complement(3254..3781)
                     /locus_tag="PXC99_001747"
     CDS             complement(3254..3781)
                     /locus_tag="PXC99_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
                     /protein_id="HDL5418183.1"
                     /translation="MNEEKYFSVDVSDETHVIRLHETLEQAKQSCLNGATEAYEFAGD
                     MDDHESYESYEAYDLPYAVYGVVLGRAKSDIRPLTDEERASELFGEAEQVIEPPTLLE
                     NNGWISIEDKLPPIETDVLGLCDISGMQLILIVSRELADNEWYFLSVNQYGLDDDVIA
                     VTHWQPLPEPPKEEK"
     gene            complement(3859..4311)
                     /locus_tag="PXC99_001748"
     CDS             complement(3859..4311)
                     /locus_tag="PXC99_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HDL5418184.1"
                     /translation="MKPFDLNKALAGEPVKLRNNDKAFVKYLISDDYIRDNKDHQVQG
                     YTVDEENVFLSEVSWAVSGSHFNDGTIAQYDIVGMWEEPRPAVTLTLPCPLKEPQENM
                     WFIDNDFTIVKSMFANAPFVKKFLPQGRCFASEEDAQEWLDAMRNSRR"
     gene            complement(4332..4508)
                     /locus_tag="PXC99_001749"
     CDS             complement(4332..4508)
                     /locus_tag="PXC99_001749"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418185.1"
                     /translation="MTTQKKYELLQNDTINHNGRTLYRIKAICHFRRTAEYSARATHA
                     TAAECYGGIACTST"
     gene            complement(4521..5156)
                     /locus_tag="PXC99_001750"
     CDS             complement(4521..5156)
                     /locus_tag="PXC99_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaJ viral recombinase family protein"
                     /protein_id="HDL5418186.1"
                     /translation="MTGDLIILDCEQGSEEWLNARLGIPTATGIENIVTPSGKKSSAW
                     NSYLAELVAESIEGAKDGFKSSDMARGNELEPLARMAYEFETDTEVVQVGGVYLNAEK
                     QLMVSPDGLIPNLKKGLEIKCPKMKTHIKYLLEGGVPNEYLIQVQSALWVTGYETWDF
                     VSYCPEYQKQPLYIYTAERDPVLMKAFDQYIPQFIKSLYALKGVTAPKGAF"
     gene            complement(5153..5947)
                     /gene="bet"
                     /locus_tag="PXC99_001751"
     CDS             complement(5153..5947)
                     /gene="bet"
                     /locus_tag="PXC99_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage recombination protein Bet"
                     /protein_id="HDL5418187.1"
                     /translation="MTTALQTLTNKLAERFEMGDGSGLVETLKSSAFAGATVSDAQMI
                     ALLVIANQYQLNPWTKEIYAFPGGNGGLTPIVGVDGWVRIINREPQYDGMEFHFTDDY
                     SACTCTIYRKDRSKPIVVTEFMGECKKSSPAWNSHPKRMLRHKAMIQCARLAFGFTGI
                     YDQDEAERIAENEKPPKNITPQNNVVETTAVELISEEQLSQIRQLMQVTGTEEAKILA
                     YIGVQALNQIPKSQAEAVIKKLNLTLDKQNAEKADNGESVGEEIPL"
     gene            complement(5988..6938)
                     /locus_tag="PXC99_001752"
     CDS             complement(5988..6938)
                     /locus_tag="PXC99_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418188.1"
                     /translation="MTTANQQFELILKTESRVVSTNLQTFEEQANQYLATLTTTFETD
                     DDFAKAKEEVKELESIEKKIRDAIKQTQTGEIAELVLTAEQIAERFRQERLTRDKLVK
                     SKETEIKKQIADKAIEEITDTRNKLVKVSDISLALEITMPKHGIANRIAEAQKNKRTI
                     DSLTKAVNAEKALIISEMSVEIGRLTERLEQLAAKSAYLFPDAVKLIATQDDLAPIIQ
                     QRLAEEAEREAAIKAKAEADKVQAEAKAITDKMERKQAVENPQNVAKMNIEEPAQTDG
                     PLGDFIITIRLNQTIQTNAVSIARELKAKFGDSVSLNKAK"
     gene            complement(6951..7163)
                     /locus_tag="PXC99_001753"
     CDS             complement(6951..7163)
                     /locus_tag="PXC99_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418189.1"
                     /translation="MIGYEDYTDASLQPEEDPSEEAFILAEENIIELLENNGFETIAT
                     ILAGSDGWRNAINAYLAEQNKHRNEF"
     gene            complement(7297..7776)
                     /locus_tag="PXC99_001754"
     CDS             complement(7297..7776)
                     /locus_tag="PXC99_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418190.1"
                     /translation="MKRNKVESYTIRLLKNNHTKRYFGEVILNGIKEISTAEMMSEIN
                     AIKAVNKRIEALNKTKAVNLPNYPEIRGHQPIMYNYNFEQIEEDPEQVKPKPSKPKRK
                     PFIPYGLNGYFVDSNGNIRLHLDRRASAETITLETDFFNVLAEMVKRTQEANNAKHA"
     gene            complement(7773..8132)
                     /locus_tag="PXC99_001755"
     CDS             complement(7773..8132)
                     /locus_tag="PXC99_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418191.1"
                     /translation="MTTFSIYTSVWHDSSTKGFRHNIKHKRHDCWRADIRIKQKINDV
                     WVQISRIRKRFKCPEQAKSFVEQWKQIDSPAFMQHQINRQALREELSNLEQRKQKQDG
                     ILEVIEYRISQIKELLK"
     gene            complement(8136..8642)
                     /locus_tag="PXC99_001756"
     CDS             complement(8136..8642)
                     /locus_tag="PXC99_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418192.1"
                     /translation="MKTKYKIIIERAKQQGLTHIELTQKHCLYLATSVGKLCYGVANN
                     AEQHIKLAAGEIFTLLTIINHQIQFDEDLELHTWKASGTTPPEQRAIRMLHHTSQFAW
                     FAPWLVDSNEKEQNQNTIRINLFNKCSGILIELNGILKEYELTLDECLDEFLKNKHCL
                     NEFSIHKE"
     gene            complement(8829..8904)
                     /locus_tag="PXC99_001757"
     tRNA            complement(8829..8904)
                     /locus_tag="PXC99_001757"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8869..8871),aa:Arg,seq:tct)
     gene            complement(9211..9447)
                     /locus_tag="PXC99_001758"
     CDS             complement(9211..9447)
                     /locus_tag="PXC99_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418193.1"
                     /translation="MSNQEFVKLGSVEPSTIDELQKEDIRQAILKSVSITPYYVGLEI
                     AVCQAISAINKFSDGCITEELLDTKNGDKYRKNN"
     gene            complement(9829..10059)
                     /locus_tag="PXC99_001759"
     CDS             complement(9829..10059)
                     /locus_tag="PXC99_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418194.1"
                     /translation="MNAQATLNNHKDYILCGRKEKRTSDFINVFEVFENEATQEFVIE
                     RAMFRNGKLIDWNQSDKMNAEQAQQLWQAYIH"
     gene            10351..10626
                     /locus_tag="PXC99_001760"
     CDS             10351..10626
                     /locus_tag="PXC99_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011039853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5418195.1"
                     /translation="MIKSFKHKGLKQYFEKGITKGIQLNHQRKIDGILDLIDSAESID
                     EFMPFYQCHELKGNRKGIYSMTVNGNWRITFEFVNGDAYILNYEDYH"
     gene            10635..10940
                     /locus_tag="PXC99_001761"
     CDS             10635..10940
                     /locus_tag="PXC99_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antidote protein"
                     /protein_id="HDL5418196.1"
                     /translation="MRKPAHPGQILLDGFIEPNNIKIKELADHLGFSRETLSRVLHGK
                     TPMTANLALSLEEAGISTAKLWLNLQTKYDLWELKQQRLNPVMPFHFGGNYGETAHA"
BASE COUNT         2829 a         2185 c         2259 g         3740 t
ORIGIN      
        1 gttagctaca agcggttggt tgtcaagtgt tcatttgttc aatgaacagt tcatcagtgg
       61 ttaatcttca atatcaatat attccgctaa ctcacttcga gcttttaaat aagccttgcg
      121 aagcccgtgg aatttttcat cttggacttc ttcaaagtca ctataactga cgaaagcgta
      181 ttcaaaacct tcgttttcaa ttttagtttg aagatattct ttgtcttctt ctgtcatttc
      241 gtttctccta ttgagagtgg ataaaaataa acactgcacg ggcagggtcg gggaagcatt
      301 atcgctgtgc gatagtgcat ggtttgccat cgcagtcgtt gtgtaactct aagtagtcgg
      361 cagcaactgc aaaggcggtt aaaaagagta tgatttttgc gtatttcatc gcctaatcct
      421 tgaattttgg gtgcaggaaa ccgccgcttg atgtttcaca agcggtcgga ttgtgtgatt
      481 tttttgcaaa ttaaattcgg actaagccgc ctaagccttt cggctggtat tgccttaagg
      541 tagttagggc tttgtggtag tgagcttctt caaacggatc gacctcgaag tcggctaaca
      601 tcggttcaag tatccgtttc attacgccaa gcgtggtttg atactcggtg gcgtgagtgt
      661 aggcggttgc cccaaacggc gaaccgatag cacgcaacgg tttttctaac gtagcaagta
      721 cttcaaggct gttgtagagg gcgtaccaca ttgaagcgaa acgtagccat tcttttttgg
      781 ttagctccat tgggatttta ggttcgacaa tcggggcgat ttgtgaacgt tccgctttgc
      841 ccttgaacca gtaatcgtgc agggcttggt agcactcttt tttgtatttg atgagcgttt
      901 ctctgatttc gggtttgcag cgattgatgt caatgccgaa gagccagccg ttgaggtatt
      961 caattgggag gcagatcatt tgttgatcgc caccgtttgt aggtattctt atgataagaa
     1021 taccctgcga aaggatttca tctcgtttga tccgttcgta ttgagcgtgc caagtcaagc
     1081 cgatattttc gcagatcggt ttcattgcgg tgtaatgtgt gccgttttgc tcgaatgtga
     1141 ttaaggcttg gttgttgaaa gaaatggttt gagtagaaat ttgagttgac atagtcgtaa
     1201 tccttagagt ctatttgttt aaaacaagcc actttcgaca gtggcgtcgg gaggttcgaa
     1261 aacccactct aaggtaaggg ctggacgtat ttcctttcgg tcttgtatta gtcgccctcc
     1321 cgacatagtc aggattacgg atataaaaaa atcgcctagt ggcgattagt gaactatccg
     1381 ccttagagta tgaggtttcg acaccttggg cggaatagta agttaaagtt tggcggttgt
     1441 caaataaaat tattttaata aatactaaaa aatagcttgc gttttatttg gtatgtatta
     1501 aaataatctt gttttcggaa agggtctgaa aatgaagaag ccgcccttga agagagcggc
     1561 aaacatcagg aactggatta tgtatcttaa gttgttaatc ctagtgatct taatcttaat
     1621 aagcacgcca gcttattaga ttagaaagct aaaagtccta gcagagaacg ccatctctgc
     1681 taggcagttc ctaaataata taacgttccg tattaaaaat caacaaggaa ttgacaatgc
     1741 aaacagagaa acgaggtcgt ggtcgcccta aatcaggttt aacgcttcaa gaattacaag
     1801 caaaaagcga tgcaaagcgt ggtgtgcgat tgaagtcatt caagttccac gaagatttta
     1861 ttgctcaact tgaacagctt gcagaacaac acggcatttc gcaaacacag gtaatcgttc
     1921 aagcggttga gcagttttca aaaggggcgt aagcccctat aaacctaccc ttcactgttc
     1981 gatgttttta attagttgtt gcatttaatt tggtgtaatt ccaccaaatt aaaatttgga
     2041 ttattcagct cttcccaaac ttgaagaaat tcaatggtat ttttattttg aagccagttt
     2101 ttaatgagct ggtcgctgtc tccaaaagct ttgcacatat cagttaggct gatgtaatcc
     2161 tcaccatcac gagcggttac tttgacctcc acgccttgta caatcattac gctatttgcc
     2221 atttcgtttc tccgttttta ggtacaaaaa aagccgttgg tggacggctt gaaagtgcgg
     2281 ttatcttaat ccgaagtttg gcggtgtcaa gcctcaatat ctatttttgc gatctgcatc
     2341 gaaaaaataa atttttgttc tgacagtaaa acgctttcgt agtaatctca taaaaaaata
     2401 taaggagaac actatgaaag agcttttcaa acaatggcta atcaatcagg actcgccatt
     2461 cattaatagc tgtggcgttg agtgtatttt gtcaaaagtt gatgaccggc taaacataat
     2521 caacgccaac gaagaagaaa ccgaaactct tatagagtgg cggaatgctt ttctgcaaga
     2581 tgtttcggtt tttatagctt aggtactata aatcgtcttc tttaacccaa atcccagctt
     2641 gcatttcgcc cttgcgatct ttgatttggt cgtaggcgtg agcgaggcag tcattaagcg
     2701 taaatctatt tattaaggct aaatggtgta atatgccaaa aaaacggcta tatttacctc
     2761 tgtctttaat gcgttcaata tcatatagac aatgaacagc gaccgaaata tcaaatctgt
     2821 aaccatttaa tctatgattt tcaaattgta cagggtaaat aggttgtttt tcttgttttg
     2881 ctttaataat acagacaaca atcaaatccc caatcgcatc tttaatcatt tcaggattat
     2941 tgcgggcaat gcctccgcag agttcgccaa actcttccat cagtttgagc atttgctttt
     3001 gtggggttga gccgttaatt aaattgcggt cttccgccca ttgttcgatg tttttaatta
     3061 gttgttgcat tgtttagtcc tctcatttct ttcattgctt catcaatcgc cgtgcgtaaa
     3121 tcggcatttc ttgcccaatg aaaatactgc tcgtgcggtt tggtatagct agcaataata
     3181 aattcgtcca ccaaatcaga atatcggaca tctaatttgc gttgggcgat aaagtctaag
     3241 cgttcggtgt cggtcatttt tcctcctttg gtggttcggg aagtggttgc cagtgggtta
     3301 ctgcaatcac atcgtcatca agcccatatt gatttacact aagaaaatac cactcgttat
     3361 cggcaagttc tcttgaaact attaaaatta actgcattcc tgaaatatcg cataacccta
     3421 gcacatccgt ttcaataggt ggtaatttgt cctcaatgga aatccagccg ttgttttcta
     3481 aaagtgttgg tggttcaata acttgttcag cttccccaaa taactccgat gctctttctt
     3541 cgtctgttag tggacgaata tctgattttg ctctacctaa aacaacacca taaactgcat
     3601 agggtaaatc ataggcttca tagctttcat agctttcgtg atcatccatg tcacccgcaa
     3661 actcataggc ttcagtagca ccatttaaac agctttgttt tgcttgctct aatgtttcgt
     3721 gcaaccttat tacatgtgtc tcatccgaga catcgaccga aaaatatttt tcttcattca
     3781 ttttctttct ccgcgttccg tgtttatgtg gatatacaag aaattcaaca gcagcattca
     3841 gctgttagtg ctgccgattt acctacgact atttcgcatt gcatctaacc attcttgagc
     3901 gtcttcttct gaagcgaaac atcgcccttg tggcaagaat ttttttacaa agggggcatt
     3961 tgcgaacata gattttacta tggtaaaatc attgtcaata aaccacatat tttcttgagg
     4021 ttcttttaat gggcaaggta acgtcaatgt tactgctggt cttggttctt cccacatacc
     4081 aacaatatca tattgagcta ttgttccatc attgaaatga gatccgctaa cagcccacga
     4141 tacttctgac aaaaatacat tttcttcatc aactgtatac ccttgtactt ggtggtcttt
     4201 attatctcta atatagtcat cactaattag gtattttaca aatgccttat cattatttct
     4261 tagttttact ggctcacctg ccaatgcttt atttaaatca aatggtttca ttttattctc
     4321 cgtgtttgtg gttatgttga tgtacaggca attccaccat agcattcagc ggctgtggcg
     4381 tgagtggctc ttgcggaata ttcagccgtc cgcctaaagt ggcatatggc tttgatgcgg
     4441 tagagtgttc tgccgttgtg gttgattgtg tcgttttgga gtagttcgta tttcttttgg
     4501 gttgtcatat tggctaccta ttaaaaagcc cctttcgggg cggttacccc cttcaatgca
     4561 taaagggatt tgataaattg cgggatatat tgatcaaagg ctttcatcaa taccggatca
     4621 cgttcggctg tgtagatgta aagcggttgt ttttggtatt cggggcagta gctgacaaag
     4681 tcccacgttt cgtagcctgt tacccaaagg gcagattgca cttgaataag atattcattc
     4741 ggcacaccgc cttctagcag gtatttgatg tgggttttca ttttcgggca tttgatttcc
     4801 aacccttttt ttagattggg aattaagccg tcaggactta ccattaactg tttttcggcg
     4861 ttaaggtaca caccgccgac ttgcacgact tcggtgtcgg tttcaaactc gtaagccatt
     4921 cgtgcaagcg gttcaagctc gttgcctcgt gccatatcag acgacttaaa accgtctttt
     4981 gctccctcaa tgctttcggc aaccagttcg gcaagatagc tattccaagc ggacgatttt
     5041 ttaccgcttg gcgtaacgat attttcaatg cctgtggcgg tgggaatgcc caatctggca
     5101 ttgagccatt cttctgatcc ttgttcgcaa tctaaaatga ttaaatcgcc tgtcatagtg
     5161 ggatttcctc accgacactt tcgccattat ccgccttttc agcgttttgc ttgtctagcg
     5221 taagattgag ctttttaatc actgcctctg cctgcgattt agggatttgg ttcagtgctt
     5281 gaacgccaat ataggcgaga attttcgcct cctccgtacc ggttacttgc attaactgcc
     5341 ggatttgcga cagttgttct tccgaaatga gttcaacggc agtggtttct accacgttat
     5401 tttgtggtgt gatgttttta ggtggttttt cattttccgc aatacgctct gcttcgtctt
     5461 ggtcgtaaat acccgtaaag ccaaaggcta atcttgcaca ttggatcatt gctttatggc
     5521 gtaacattct ttttgggtga gagttccaag ctggagagct ctttttacat tcccccataa
     5581 attccgtcac cacaatcggt ttacttctat ctttacggta gatagtacaa gtacaggcgg
     5641 aatagtcatc ggtaaaatga aattccattc catcatattg aggctcacgg ttaataatgc
     5701 gaacccaacc atcaacgccg acaataggcg ttaatccacc gttcccaccg gggaatgcat
     5761 aaatttcttt tgtccaaggg tttaattggt attggttagc aataaccaat agtgcaatca
     5821 tttgagcatc gcttacggtt gcccctgcga aagcagacga tttaagtgtc tcaactaatc
     5881 ctgagccatc tcccatttca aaacgctcgg caagtttgtt ggttagtgtt tgtaatgcag
     5941 ttgtcataat atgatcctta tttaggttga atttgtgcgg tatcaaatca tttagcctta
     6001 ttgagcgaaa cgctatcccc aaatttcgct ttcagctcac gagcaatact gactgcgttg
     6061 gtttggattg tttggtttaa gcgaatagta atgataaaat cgcctaatgg cccatcggtt
     6121 tgtgccggtt cttcgatgtt catttttgcc acattttgcg gattttcgac cgcttgtttg
     6181 cgctccattt tatcagtaat cgctttggct tcggcttgta ctttgtcggc ttctgctttg
     6241 gctttaatcg ccgcctcacg ctcggcttct tcggcaaggc gttgttgaat aattggggcg
     6301 aggtcgtctt gggttgcgat caatttcact gcatcaggaa aaagataagc tgattttgca
     6361 gcaagctgtt ctaatcgctc agtcaagcgc ccgatttcta ccgacatttc gctgataatc
     6421 agcgcttttt cggcgttcac ggctttggtt aagctgtcaa tcgtgcgttt atttttctgt
     6481 gcctcggcaa tacgattagc aatgccgtgt tttggcattg tgatttctaa ggcaagggaa
     6541 atatcactta ctttaaccag cttgtttctg gtatcagtga tttcttcaat ggctttatcg
     6601 gcaatctgtt ttttgatttc cgtttctttg ctcttaacga gcttgtctcg ggttaatcgc
     6661 tcttggcgga aacgttcagc gatttgttct gctgttaata ccaattccgc aatctcgcca
     6721 gtttgcgttt gtttaattgc gtcacgaatt tttttctcaa tgctttcaag ctccttcact
     6781 tcttcttttg cttttgcaaa atcatcatcg gtttcaaagg tggtggtgag cgtggcaagg
     6841 tattgatttg cttgctcttc aaaagtttgc aagttggtag aaaccactcg gctttcggtt
     6901 tttaaaataa gttcaaattg ttgatttgca gttgtcattt tcttattcct ctaaaattca
     6961 tttctgtgtt tgttctgttc ggctaggtag gcgttgattg cgttacgcca gccatcagaa
     7021 ccggctagga tggtggcaat ggtttcaaag ccgttgtttt ctaatagctc gatgatgttt
     7081 tcttcagcca agatgaaagc ctcttcgcta gggtcttctt ctggttgaag tgaagcatct
     7141 gtgtagtctt cgtatcctat catcacactt tctccgttac tttaaattcg caagtttcag
     7201 gcttgcaggt gctttcaggg ataagctctt cattgcatta ggagggtgat ggcaaccata
     7261 aaaagcaggg cgtataagcc gtatttaatc cattgtctaa gcatgtttag cattgtttgc
     7321 ctcttgtgta cgttttacca tttcggcaag aacgttgaag aaatcagttt caagggtaat
     7381 tgtttcggca cttgctcgtc tgtctagatg taagcgaata ttaccgttgc tatccacaaa
     7441 gtagccgttt agcccataag gtatgaatgg cttgcgtttt ggttttgatg gtttaggctt
     7501 aacctgttca ggatcttcct caatttgttc aaaattgtaa ttgtacataa taggctgatg
     7561 accccggatt tcaggataat taggcaaatt aacggctttg gttttattca gagcttcaat
     7621 gcgcttattt actgccttaa tagcgttaat ttcagacatc atctctgccg tgctgatttc
     7681 ttttatgccg tttaatataa cttctccgaa gtagcgtttt gtatgattat tttttaataa
     7741 gcggatagta tagctttcta ctttattgcg tttcatttca gcaactcctt gatttggcta
     7801 atacgatact caatcacctc aagtattccg tcttgcttct gtttgcgttg ctcaaggttt
     7861 gataattctt ctcttaatgc ttggcggttg atttggtgtt gcataaatgc aggtgaatca
     7921 atttgtttcc attgttctac aaaggatttt gcctgttcag ggcacttgaa gcgtttgcgt
     7981 atccttgaaa tctgcaccca cacatcattg attttttgct ttatgcggat atccgctctc
     8041 cagcaatcgt ggcgtttatg cttaatgttg tggcgaaagc ctttcgtgga gctgtcgtgc
     8101 catacactgg tataaatact aaacgtcgtc attttttact ccttgtgaat actaaattca
     8161 ttcaaacaat gcttattttt caagaattca tctaagcact catcaagagt tagctcgtat
     8221 tctttaagaa tgccatttag ttcaatcaga atcccagagc atttgttaaa taaattaatc
     8281 ctgattgtat tttggttttg ttctttttca ttgctgtcca ctaaccaagg agcaaaccaa
     8341 gcaaattgcg aggtatgatg taacatacgt atcgctcttt gctcgggtgg ggttgttcca
     8401 ctagctttcc acgtgtgaag ctctaagtct tcatcgaact ggatttgatg gttaatgatc
     8461 gttagtagtg taaaaatctc tccagcagca agtttaatat gttgttctgc attattagct
     8521 accccgtagc acagtttccc tactgatgta gcgagataca gacaatgttt ttgagtaagc
     8581 tcaatatggg tcaaaccctg ttgttttgct cgctcaataa taattttgta tttagttttc
     8641 attttgaatc cttttatgtg gataaaaaaa gccccgcacg aggcggggaa acggagtcat
     8701 tatgtttatt atcaaccgct ctttttaagt tgtagcagtt acacaactta gccattcaaa
     8761 accgctctac acggtaggtt tccacttcgt aggctcgtca tcgatgatgt gcgtaaagcg
     8821 gttttggatg gcgaccgcag agagattcga actctcgacc cactgcttag aaggcagctg
     8881 ctctatccac tgaactatgc ggtcaaagta ccgttgctta accccaacgg cagggcttac
     8941 ttcaatctaa ggaatgtgat ggactaacca tctctaacaa ctctctagta cattcgtttc
     9001 gctgcctaac gccgacttta gaaaacatta aaactaaaac ggggttattt gtctcactct
     9061 ctgttgagag ctgttagaga tggtggctct tttttatact tgtgagccac cgggccaagt
     9121 cctcttgttt gccacaactt cgaggaatat aatacttggg caacatctag ggctaatgcc
     9181 gaaaaaatga aatcactttg gtgttattga ttagttattt tttcggtatt tatcaccatt
     9241 tttcgtatct aaaagctctt ctgtaataca gccatcacta aatttattga tggctgatat
     9301 tgcttggcaa accgctattt ccagccccac ataatatggc gttatagaga cggattttaa
     9361 tattgcctgc ctaatatctt ctttctgtaa ttcatcaatc gttgaaggtt caacgctgcc
     9421 taatttaaca aattcctgat tactcatttt gttctcctgt tattaatatt ccaaagcaca
     9481 ctttctcaaa tatgctttgg aattgaacca gcgtttgtgc ttcccgattc actgccagtg
     9541 cttaaccttt ccgctagttc gcacatcacc agtaaattcg ccacaactac cgtactattc
     9601 tttcagtccg agtagcttag agagtttcac aacttgccta taagttcatt taccgcatac
     9661 gttttaccgc tttatgcaaa gattggttct gtctctccaa tgtcattaca ttgctaagta
     9721 atccgcttgt cgtgatgtgt ttttggttta atttttaaag aacaatgcct ttcggcgagg
     9781 tttagaacct ttattcaagc cctccgtgaa gggctttgat aaaaattctt agtgaatgta
     9841 ggcttgccaa agttgttgag cttgctcggc gttcattttg tcgctttggt tccagtcgat
     9901 taacttgcca tttctgaaca ttgctctttc aatcacaaac tcttgcgtgg cttcattttc
     9961 aaagacctca aacacattga tgaaatcact ggtgcgtttt tctttgcgtc cgcataaaat
    10021 gtagtctttg tggttattta gcgttgcttg tgcgttcatt ttggtttcct ctttgtctgt
    10081 ggcgttgttt gttttgatgg gtttattatc acaaattgaa atcattaagt caattcaatt
    10141 tgtaattatt ttagccaaac aaatttcaat tcgtgattaa ataattgatt ttaaagagaa
    10201 attattttta gaaaggttgt ttgattgctt gttttttaaa cacttaacat aagaagagaa
    10261 agacaattag gagaaaaagc acttaaaaaa gattgtcttt tttattgtgc gtgatatatt
    10321 tgtatcacat tgtgtttgct aggtgttatt atgattaaga gcttcaagca taaaggctta
    10381 aaacaatatt ttgaaaaagg aataacaaaa ggtattcagc ttaatcatca acgtaaaatc
    10441 gatggtattt tagatttgat tgattcagca gaaagtattg atgaatttat gcctttttac
    10501 caatgccacg agttaaaagg aaatcgaaaa ggcatttatt ctatgacggt taatggcaac
    10561 tggcggatta catttgaatt tgtaaatggc gatgcttata ttttgaatta tgaagattat
    10621 cattaggggg agttatgcgt aaaccagcac atccggggca aattttatta gatggattta
    10681 ttgaaccaaa taacatcaaa attaaagaat tagcagatca tcttgggttt tctcgtgaaa
    10741 ctttatcaag agtattacac ggcaaaacac caatgactgc aaatttagcg ttaagtttag
    10801 aagaggcagg aattagtacg gctaagttat ggctaaactt acaaactaaa tatgatttat
    10861 gggagttaaa gcagcagcgg ttaaatcctg ttatgccttt tcattttggt ggaaattatg
    10921 gagaaactgc tcacgcttaa taatgccctc ttcggaggat tttattgttc ttaggaaaag
    10981 aaaaccgcca cgagggcggt ttattcaagg aat
//
LOCUS       DANLVT010000080        10995 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.080, whole genome shotgun sequence.
ACCESSION   DANLVT010000080 DANLVT010000000
VERSION     DANLVT010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10995)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10995)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10995
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.080"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(3..4463)
                     /gene="mukB"
                     /locus_tag="PXC99_001762"
     CDS             complement(3..4463)
                     /gene="mukB"
                     /locus_tag="PXC99_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukB"
                     /protein_id="HDL5418197.1"
                     /translation="MIDTTELQNNPQIAPLARPNDVQRGKFLSLTLINWNGFFARTFD
                     LDDLVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTAGSRDKGLYGKLK
                     AGVCYAVLESFNSRGQRIITGVRLQQIVGRDKKVDIRSFSLQNIPQEQSIISLLTEQV
                     GNKARVLALNELKDQFENSEVQFKQYHSITDYHSFMFDLGVIPKRLRSAADRSKFYKL
                     IEASLYGGISSVITKSLRDYLLPENTGVRQAFQDMESALRENRMTLEAIKVTQSDRDM
                     FKRLITESTNYVSADYMRNANERRGNVQQALEQRKEWYAAKSKILLEQQRFVEFSRES
                     ADIAEAELALEADYNSANDHLNLVMNALRHQEKIERYQDEVEELNIKLEEQQEALEEI
                     AEIAENAQARADEADDHVEELRSQMADYQQALDAQQTRALQYQQAVNALEKAKQLTGL
                     VNLDLNNIEDYHAEFVAQAEDLTDQVFELEQRLSVSDMAKTQFEKAFELVCKISGEID
                     RLQAWEEARALLSAFPEQKMQAQQAVSLRQKLNDLEQRLQQQQNAQRLVAEFNQKSQQ
                     QLNSAEELDAYFEEQQARLEDLEAELSDFVEQRSTQRQQREQLNQQYQQLAKNAPAWH
                     TAQSALTRLEEQCGEKFEASQSVMQFMQNMLSKEREATLARDELARKEQMLDEQINRL
                     SQPDGSEDARLNQLAERFGGVLLSELYDDVSIEDAPYFSALYGEARHAIVVRDLEAVK
                     TQLEKLDDCPSDLYLIEGDPSAFDDAVFSAEELGEGVVVKVSDRQWRYSKFPEVPLFG
                     RAAREKHLATLKAERDETAEKHAERAFDVQKCQRLHQHLSQFIGTHLNLAFQENPEML
                     MQEIAAERAEIERELAQSAGNEQQLRHQLESVKAQLQMLNKILPLANLLADETLEARA
                     EECREQLELAEEDEMFIRQFGATLSQLEPIAAALKSDPALFEQLEADYRRSVAEQKVL
                     QQKVFSLADVMNRRLHFSYQETVGTEGSALTEQLRQRLENAQREREQARDQLRQAQAQ
                     LSQYNQVLTGLRSSYEAKNQMLQELIREIDDLGVRGDSGAEERARFRRDELQQRLSQQ
                     RSRKGYLDKQIAVIEAEMDNLNRTLRKAERDYHTQRELVVQAKASWCIVQRLSRNSDV
                     EKRLNRRELAYQSAEELRSISDKALGALRTAVADNEYLRDSLRASEDSRKPENKVAFF
                     IAVYQHLRERIRQDIIKTDDPIDAIEQMEIELSRLTNELTGREKKLAISAESVANILR
                     KTIQREQQRILQLNQGLQNIAFGQVKGVRLVVNIRDTHAILLNALSNNREEHKDLFDS
                     QKLSFSEALAMLYKRVNPHIEMGQRTPQTIGEELLDYRNYLDLEVETFRGADGWMRAE
                     SSALSTGEAIGTGMSILLMVVQSWEEEARRMRAKDILPARLLFLDEAARLDATSINTL
                     FELCERLDMQLLIAAPENISPERGTTYKLVRKITNNQEYVHVVGLKGFAK"
     gene            complement(4639..5355)
                     /gene="mukE"
                     /locus_tag="PXC99_001763"
     CDS             complement(4639..5355)
                     /gene="mukE"
                     /locus_tag="PXC99_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukE"
                     /protein_id="HDL5418198.1"
                     /translation="MTENIQDFISPKLALAIANPIFPELDSQLRAGRHINTEQLDQHV
                     FLMDFQAELESFYRRYHVELIRAPEGFFYLRPKASTLIARSAMSEMEMLVGKVLCYLY
                     LSPERLAQQGIFSQDDVYEELLSLADESKLLKAVNPRSTGSDLDRAKLAEKAGGALRR
                     LARIGIITRVGEQNSKKFVISESVFRFGADVRTGDDPREAQLRLIRDGEATNPALLNE
                     QAVEIDENIADEAPFDGENE"
     gene            complement(5404..6747)
                     /gene="mukF"
                     /locus_tag="PXC99_001764"
     CDS             complement(5404..6747)
                     /gene="mukF"
                     /locus_tag="PXC99_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukF"
                     /protein_id="HDL5418199.1"
                     /translation="MQNELAQTIPELISWTKDREFSLSLSSDRLAFLLAISIYNQEQT
                     DGELLESDLIDLFRYVSNSFEQSDATFTQRANNAINDLVRQRLLNRFSSEFTEGLAIY
                     RVTPLGVGISNYYVRQREFSTLRLSIQLSIVADEIQRASVAAEEGIEQAQDERFWRNN
                     VFAPLKYSVAEIFDSIDLSQRIMDENQHQIRERIAELLSQNWHEAIMSCEQLLDETSG
                     NLRELQDTLNAAGDKLQAQLLRIQSCLMARNDLDFIDQLIVNLQNKLDRIISWGQQAI
                     DLWIGYDRHVHKFIRTAIDMDKNRVFGQRLRQSIQDYYNSPWLLYTAKADSLLDLRDD
                     EAMLNEAESVGELPSELEYESLSDVQEQIVSAMQAHLAPFRAEGKPIDLGVILREQLA
                     RFPESRHFDVARIIVDQAVKLGMASQDSQAVYPQWQPINEQGAEVQANVIDQYNK"
     gene            complement(7012..7899)
                     /gene="galU"
                     /locus_tag="PXC99_001765"
     CDS             complement(7012..7899)
                     /gene="galU"
                     /locus_tag="PXC99_001765"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HDL5418200.1"
                     /translation="MKVIIPVAGLGTRMLPATKAIPKEMLILADKPLIQYIVNECVAA
                     GFKEIVLVTHSSKNAIENHFDTSFELETMLEKRVKRQLLDDVRSIVPKDVTLIHVRQG
                     QAKGLGHAVLCGRTVVGDEPFAVVLPDVLLGEFTANQKTENLAAMVKRFQETGYSQIM
                     VAPVPMENVSSYGVADCHGVDIPLGGAAPIAKMVEKPSIEEAPSNLAVVGRYVFSSNI
                     WNLLEKTPVGVGDEIQLTDAIDMLIHQETVEAFHMTGRSFDCGYKVGYMKAFVEYSLN
                     HDKCGKEFKAFIKELAKSL"
     gene            complement(8035..8220)
                     /gene="csrA"
                     /locus_tag="PXC99_001766"
     CDS             complement(8035..8220)
                     /gene="csrA"
                     /locus_tag="PXC99_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HDL5418201.1"
                     /translation="MLILTRKIGEVLLVGDDVEITVLSIRGNQVKLGVNAPKEISVHR
                     REIYERIKASVEEENAE"
     gene            complement(8310..10937)
                     /gene="alaS"
                     /locus_tag="PXC99_001767"
     CDS             complement(8310..10937)
                     /gene="alaS"
                     /locus_tag="PXC99_001767"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HDL5418202.1"
                     /translation="MKTTSDIRQSFLEFFQTKGHTIVPSSSLVPENDPTLLFTNAGMN
                     QFKDVFLGLEKRPYSRATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYF
                     KQDAIKFGWEFLTSPQWLGLPKEKLYVTVYETDDEAYDIWHKEVGVPSEHIIRIGDNK
                     GAPYASDNFWAMGDTGPCGPCTEIFYDHGPEHWGGLPGSPEEDGDRYIEVWNIVFMQF
                     NRLADGTMEKLPKPSVDTGMGLERMTAVMQHVNSNYETDIFQTLIKEVATLLNVKDLD
                     NKSLRVVADHIRACSYLIADGVLPSNEGRGYVLRRIIRRAVRHGNILGAKEAFFYKLV
                     PTLATVMGQAGEVLTQKQAHIQKTLKAEEEQFARTLERGLNLLEEALAKVENNTLSGE
                     VAFKLYDTYGFPLDLTADVCRERDIKIDEDGFNAEMTAQRERAKASSSFGTDYNNVIK
                     VDSKTCFSGYTETSLNDATVIGLFSNGKSVESIQSGENAVVILDKTPFYAEMGGQVGD
                     SGQISAEICNFEVVDTQKYGQVFGHIGQLTSGSLSVGDKVNTIVDRERRHAITLNHSA
                     THLLHSALRQVLGDHVAQKGSLVSENILRFDISQPEAITKSQLEEVERIVNAKVRENI
                     QVIIEEMDIESAKAKGAMALFGEKYGEVVRVVEMSDFSIELCGGTHVKQTGDIGLFKI
                     TSEGAVAAGVRRIEAVTGENAIAWLHTLQQAVQQSAELLKADSHSFVEKIVQLQEKAK
                     RTEKELQQLKDKLAAQAGSDLAKQATQINGVNVVIQQLENVEPKALRTMVDDLKNQLG
                     SAVVVFATTAEDKVNLIVGVTKDLTDKVNAGQLVGAMAEKVGGKGGGRPDMAMAGGSE
                     PQHLLQALSLAQEWITAKL"
BASE COUNT         2954 a         2575 c         2103 g         3363 t
ORIGIN      
        1 ttttatttag caaagccttt taaaccaaca acgtgaacat actcttggtt attggtgatt
       61 ttacgcacca atttataagt tgtgcctcgt tcagggctaa tattttcagg ggctgcaatt
      121 aataactgca tatccaaacg ttcgcagagt tcaaatagcg tattaattga ggtagcatct
      181 aatcgagccg cttcatctaa gaacaataag cgagccggta gaatatcttt ggcacgcata
      241 cggcgagctt cttcttccca gctttgaact accattaaga gaatcgacat acctgtaccg
      301 atcgcctcac cggtcgataa tgcactactt tctgcacgca tccagccgtc tgcaccacgg
      361 aaggtttcca cttctaaatc taagtagtta cggtaatcca ataactcttc accaatggtc
      421 tgtggtgtac gttgccccat ctcaatatga gggttcaccc gtttatacaa catcgctaag
      481 gcttcggaga agctcagttt ttggctgtcg aataaatctt tgtgttcctc acgattattg
      541 gataacgcat tgagtaaaat agcgtgcgta tctcggatat tcaccaccaa acgcacccct
      601 tttacctgac cgaatgcaat attttgtaaa ccttggttca gttgcaaaat gcgttgttgt
      661 tcacgctgaa tggttttacg taaaatattt gccacacttt ccgcactgat cgccagtttt
      721 ttctcacgac cggttaattc attggttaag cgtgaaagct cgatttccat ctgctcaatc
      781 gcatcaatcg gatcatcggt tttgataatg tcttggcgaa tccgctcacg caaatgctga
      841 taaaccgcaa taaagaacgc cactttgttt tccggcttgc gactatcttc agaagcccgc
      901 aagctatcac gcaggtattc attatccgcc acggcggtgc gtaatgcccc gagagcttta
      961 tccgaaatcg aacgtaattc ttcagccgat tgataagcca attcacggcg atttaaacgt
     1021 ttttccacat cgctgttacg agataaacgt tgcacaatac accagctggc ttttgcctgc
     1081 accaccaatt cacgttgtgt atgataatca cgttcggctt tacgtaaggt gcggttaagg
     1141 ttatccattt ccgcctcgat caccgcaatt tgtttatcta aataaccttt gcgggaacgt
     1201 tgctggctta aacgttgttg caattcatca cggcggaatc tggctcgctc ttccgctccg
     1261 ctatcaccac gcacgcccaa atcgtcaatt tcacgaatta actcttgtag catttggttt
     1321 ttcgcctcat aagaactgcg taagccggtc aatacttggt tatattgtga aagttgagct
     1381 tgagcttgac gcagctgatc acgagcctgt tcacgctcac gttgtgcatt ttccaaacgt
     1441 tggcgtagct gttcggttaa tgcagagcct tctgtaccca ccgtttcttg atagctaaaa
     1501 tggaggcggc gattcattac atcagccaag ctgaacactt tttgctgtaa cactttttgc
     1561 tcggcaactg aacggcggta atcggcttcc aactgttcaa ataaagccgg atcacttttt
     1621 aatgcggctg caatcggctc aagttggctt aatgttgctc caaattggcg gataaacatt
     1681 tcatcttctt ctgccaattc taattgctca cgacattcct ccgctcgtgc ttccagcgtt
     1741 tcatcggcta ataaattcgc aagcggtaga attttattca acatttgcaa ctgggctttt
     1801 acgctttcta attggtgacg taattgctgt tcgttaccgg ctgattgtgc caattcacgt
     1861 tcaatttctg cccgttctgc cgcaatctct tgcattaaca tttcagggtt ttcttggaac
     1921 gctaaattta agtgcgtgcc gataaattgg cttaagtgtt gatgtaaacg ctggcatttc
     1981 tgcacatcaa aggcacgttc agcgtgtttt tctgcggttt catcacgctc tgcttttaaa
     2041 gtcgctaaat gtttttcacg agcagcacgt ccgaataacg gcacttcagg gaatttagaa
     2101 taacgccatt ggcgatcgga gactttcacc accacgcctt cgcctaattc ctcggcacta
     2161 aataccgcat cgtcaaaggc ggacggatca ccttcaatta aataaagatc acttgggcaa
     2221 tcgtctaatt tctctagctg tgttttaacc gcctctaaat cacgcactac aatagcgtgg
     2281 cgagcctcgc cgtataaggc ggagaaataa ggcgcatctt caattgatac atcatcatat
     2341 aactcagaga gtaacactcc accaaaacgt tctgccaact ggtttaagcg ggcgtcttcc
     2401 gagccgtccg gctggcttaa gcgattaatt tgctcatcaa gcatttgttc tttacgagcc
     2461 aattcatcac gagcaagggt ggcttcacgc tctttgctca gcatattttg cataaactgc
     2521 atcactgatt ggctggcttc aaacttctcg ccacattgct cttctaaacg agtcagagcc
     2581 gattgtgccg tatgccaagc cggtgcattc ttcgctaatt gctgatattg ttgattaagc
     2641 tgttcacgtt gttggcgttg ggttgaacgt tgttctacaa agtccgaaag ctctgcctct
     2701 aaatcttcta ggcgagcttg ctgctcttca aaataggcgt ctaattcttc cgctgaattg
     2761 agttgttgtt gcgatttttg gttaaattcc gccactaaac gctgggcatt ttgctgttgt
     2821 tgcaaacgct gttctaaatc gttgagtttt tgacgtaaac tcaccgcttg ctgagcttgc
     2881 attttttgct cagggaaggc agaaagtaac gcacgagcct cttcccacgc ttgcaagcgg
     2941 tcaatttcac cggaaatttt gcaaaccaat tcaaacgctt tttcaaattg ggttttcgcc
     3001 atatccgaca cgcttaaacg ttgttccagc tcaaatactt gatcggtaag atcttcggct
     3061 tgagccacaa attctgcgtg gtaatcttca atattattta aatctaaatt cactaagccg
     3121 gttagctgtt tggctttttc taacgcattc accgcttgtt ggtattgcaa tgcacgagtt
     3181 tgctgtgcat ctaaggcttg ttggtaatcc gccatttgag aacgcaattc ttcaacgtga
     3241 tcatctgcct catccgcacg agcctgagca ttttcggcaa tttccgcaat ttcttccaat
     3301 gcctcttgct gttcttccag cttaatattc agctcttcaa cttcgtcttg gtagcgttcg
     3361 attttctctt ggtggcgtaa cgcattcatc actaaattta gatgatcgtt cgcactattg
     3421 taatccgcct ctaacgccag ctctgcttcg gcaatatccg cactttcacg gctaaattcc
     3481 acaaagcgtt gctgttcgag caaaattttg gattttgccg cataccactc tttgcgttgc
     3541 tctaaggctt gttgtacatt gccacggcgt tcattcgcat tacgcatata atccgccgac
     3601 acataattgg tcgattcggt aattaagcgt ttgaacatat cccgatccga ttgcgtgacc
     3661 ttaatcgcct ctaaggtcat acggttttca cgcagagcgg attccatatc ttggaacgct
     3721 tggcgaacgc ccgtattttc cggcaacaag taatcacgca aggatttggt aatcacactt
     3781 gaaataccac cataaagcga ggcttcgatt aatttgtaga atttgctacg gtcggctgcc
     3841 gaacgaaggc gttttgggat tacgcccaaa tcgaacataa aactgtggta atcagtaatc
     3901 gaatggtact gtttgaattg gacttcgctg ttctcaaatt gatctttgag ttcatttaac
     3961 gccagcactc gagccttatt ccccacttgt tcggtcagta ggctgataat gctttgctct
     4021 tgaggaatat tctggagcga gaacgaacga atatcgactt ttttatcccg tccgacaatt
     4081 tgttgcaaac gcacgccggt aataatccgt tgcccacggg aattgaatga ctctaacacc
     4141 gcatagcaaa cacccgcttt taacttaccg tataagcctt tatcacgaga accggcggtt
     4201 gagcctgctt cagtcgtatt acggaaatta agcaaggtta aatctgggat caaggcggtc
     4261 acaaaccctg ccattgtggt ggacttacct gccccgttac cgcctgaaag cgtggtcact
     4321 aagtcatcta aatcaaaggt tcgagcaaaa aaaccgttcc agttaatcag cgttaaagag
     4381 agaaatttac cgcgttgtac atcattcggg cgtgcaagcg gtgcaatttg aggattattt
     4441 tgcaattctg tggtatcaat cattatgttt tctcactaat tgtcctagca cgctaaagcg
     4501 tactaggtta ggtataggtg agtagctccg ctactctaat cgcaacctca gccttggagg
     4561 gctgctttat gcttaaccta gttcggcttt accgtgtcta gggcagactc attaaatgct
     4621 gaatctattc gaatgaaatc actcattttc tccgtcaaag ggggcttcat ctgcaatatt
     4681 ttcatctatt tcaaccgctt gttcgtttaa caacgcaggg tttgtcgctt caccatcacg
     4741 aattaagcga agctgtgcct ctcttgggtc atcaccggta cgcacatcag ccccaaaacg
     4801 gaagaccgat tctgaaatca caaatttttt gctgttttgc tcgcctactc gggtaataat
     4861 gccgatacgg gctaatctgc gtaacgctcc gccggctttt tctgccagct tggcacggtc
     4921 taaatcggaa ccggtcgaac gtgggtttac cgcttttaat aatttgcttt catcggcaag
     4981 actgagtaat tcttcataca catcatcttg gctgaaaatc ccctgctgag ccaaacgttc
     5041 cggacttaaa tagaggtagc acaacacctt acccactaac atttccattt ctgacattgc
     5101 cgaacgggca attagtgtcg aggctttcgg gcgtaggtag aaaaagcctt ccggtgctcg
     5161 aatcaactca acgtgataac ggcggtaaaa actctctagt tccgcttgaa aatccatcaa
     5221 aaagacgtgt tggtcaagct gctcggtatt gatatggcga ccggctcgta attggctgtc
     5281 tagctccgga aaaatcgggt tggcaatcgc aagtgccagt ttcggggaaa tgaaatcttg
     5341 gatattctct gtcattgtca ttctcttcaa ttttgcaaaa ttctgggtaa aaacgaccgc
     5401 ttgttattta ttgtattggt cgataacatt cgcctgcact tccgcccctt gctcgttaat
     5461 cggctgccat tgtgggtaaa cggcttggct atcttggctt gccataccta acttaacagc
     5521 ttgatcgaca ataatacgag ccacgtcaaa atggcgggat tccgggaatc gggcaagctg
     5581 ttcacgcaag ataacgccta aatctatcgg tttaccttca gcacggaacg gcgctaaatg
     5641 agcttgcatt gccgaaacaa tttgctcttg cacatctgaa agcgactcat actctaactc
     5701 acttggcaac tcgcccaccg attctgcctc atttaacatt gcttcatcat cacgcaagtc
     5761 cagtaacgaa tcggcttttg cagtataaag caaccaaggg ctgttgtaat aatcttgaat
     5821 cgattggcgt aaccgttgcc cgaatacacg gtttttgtcc atatcaatcg ctgtacgaat
     5881 aaatttatgc acatggcggt catagccgat ccaaagatcg atagcttgtt gtccccagct
     5941 gataatacgg tctaacttat tttgtagatt cacaatcagc tgatcgataa aatccaaatc
     6001 attacgagcc atcaggcaac tttgaatccg caataattga gcttgcagtt tatcaccagc
     6061 ggcatttaag gtatcttgca actcacgcaa attccccgag gtttcgtcta acaattgctc
     6121 acaactcata attgcttcgt gccagttttg gctaagcagt tcggctattc gttcacggat
     6181 ttggtgctga ttttcgtcca taatccgttg tgaaagatcg atgctgtcaa agatttccgc
     6241 caccgaatat ttcaatgggg caaacacatt atttcgccaa aaacgttcat cttgtgcctg
     6301 ctctattccc tcttccgctg ctactgaagc tcgctgaatt tcatctgcca caatcgaaag
     6361 ttgaatcgat aaacgcaggg tagaaaattc ccgctggcga acgtaataat ttgaaattcc
     6421 cacccctaac ggcgtaacac gataaatcgc caaaccttcc gtaaattcgc tactaaaacg
     6481 gtttaacaac cgttgtctga ctaaatcatt aatcgcatta ttggcacgct gggtaaaagt
     6541 ggcatcagat tgctcaaacg aatttgaaac ataacggaaa agatcaataa gatcactttc
     6601 taacaattca ccatctgtct gttcttggtt ataaatagag atagcaagta gaaacgctaa
     6661 gcggtcggaa gaaagcgaaa gtgaaaattc acgatctttc gtccaagaga tgagttctgg
     6721 aatagtctgt gccaattcgt tctgcatacg ggcttaatct ttaatttcta tacaaaaatg
     6781 gtatttattg taactgaatg taatcaaaat gggaatggat aaaacgcaga caagagaaat
     6841 gaacaatata agcggtcaaa tatgggtgat tttttgcaaa aagtatttta aaggtaaatg
     6901 aatccgaaaa tttattatca ctacgctaat ttatgatacc ataaatagaa aagactggat
     6961 ccaatagaat atcagacaca gccccttaga tcatagtcta aactctaagg cttagagtga
     7021 tttagctaac tctttaataa atgctttaaa ttcttttccg catttgtcat gatttaaact
     7081 atattctaca aatgctttca tatagccgac tttataacca caatcaaatg agcgccctgt
     7141 catatgaaaa gcttcaaccg tttcttggtg aatcaacata tcaattgcat ccgtcagctg
     7201 gatttcatca cctacgccta ctggcgtttt ttctaataaa ttccaaatat ttgaggaaaa
     7261 tacataacgt cctactaccg ctaaattaga aggcgcctct tcaatacttg gtttttcaac
     7321 cattttcgca ataggcgctg cccccccgag agggatatct acaccatggc agtcagcaac
     7381 cccatagcta cttacatttt ccattggaac cggcgcaacc ataatttggc tatatccggt
     7441 ttcttggaaa cgcttcacca tcgcagctaa attttccgtt ttttggtttg ctgtaaattc
     7501 accaagtaat acatctggta atacaaccgc aaacggttca tcgccaacca ctgttcgtcc
     7561 acatagaacc gcatgaccta aacctttggc ttgcccttgg cgaacgtgaa ttaaggtaac
     7621 atcttttggt acaatagaac gtacatcatc taataattga cgttttactc gtttctccag
     7681 catcgtttcc aattcaaaag aggtatcaaa atggttttcg atagcattct ttgaagagtg
     7741 agtaaccaat acaatttctt taaaacctgc agccacacat tcatttacaa tgtattgaat
     7801 aagaggttta tctgcaagga taagcatttc ttttggaata gctttggttg cgggtaacat
     7861 gcgcgttccc aatccagcaa caggaataat gactttcatt tggaatcctt tgatgactta
     7921 acatattaga tataactgaa ataaaccgct tagacataac aggcggtcaa ttttcagaaa
     7981 attttgcatt gcctgcttcg ctgttatcat ctagcagctt tacagttaaa atgcttattc
     8041 cgcattttcc tcttctactg aggcttttat tctttcataa atctctcggc ggtgtacaga
     8101 gatttctttt ggtgcattca cacctaattt aacttgattt cctcggatgc tgagtaccgt
     8161 aatctcaaca tcatctccta cgagtaaaac ttccccaatc ttacgagtta gaataagcat
     8221 aattgtctcc taaaaagtga aaaactctat aaatacttaa atatagagta aagttttaaa
     8281 ggcgagttca gctcgccttg ttattatttt taaagttttg ctgtaatcca ttcttgagca
     8341 agtgacaatg cttgcaataa atgttgtggt tctgagcctc cggccattgc catatcagga
     8401 cgtccgcccc ctttacctcc cactttttca gccattgcac caactaattg accagcattg
     8461 actttatcgg ttaaatcttt ggtcacacct acaatcaaat tgactttatc ttccgccgta
     8521 gtcgcaaata caacaactgc actgcctaat tgatttttta ggtcatcaac catcgttctc
     8581 aatgcttttg gttcaacatt ctctaattgt tgaatcacta cattcacgcc attgatttgg
     8641 gtagcttgtt tggctaaatc tgaacctgct tgtgctgcaa gtttatcttt tagctgttga
     8701 agctcttttt ctgtacgttt agccttctct tgtaattgaa caattttctc aacgaatgaa
     8761 tgactgtctg cttttaacaa ttcagcactt tgttgaacgg cttgttgtaa ggtatgcaac
     8821 caagcaatcg cattttcacc agtgacagcc tctatacggc gtacacctgc tgctaccgca
     8881 ccttcagagg taattttgaa taagccaata tcaccggttt gtttaacgtg tgtgccgcca
     8941 caaagttcaa tcgagaaatc tgacatttcc actacacgca ctacttcgcc atatttttca
     9001 ccaaataacg ccattgcacc tttcgctttt gcagattcaa tatccatttc ttcaatgatt
     9061 acctgaatat tttcacgcac tttagcattc acgatacgtt caacttcttc aagttgtgat
     9121 ttagtaattg cttccggctg agaaatatca aaacgtaaaa tattttctga cactaatgag
     9181 cctttttgag caacgtggtc gcctagcact tggcgtaacg cagaatgcag taagtgggta
     9241 gcactgtggt ttaatgtaat agcatgacga cgctctctat ctacgatcgt attaactttg
     9301 tcgccaacag aaagtgagcc ggaagttaat tgcccaatat gcccgaatac ttgaccatat
     9361 ttttgcgtat ctactacctc aaaattgcaa atttctgcgg aaatttgacc gctatctccc
     9421 acttgtccgc ccatttctgc atagaatggg gttttatcta aaatcactac cgcattttca
     9481 cccgattgaa tagactcaac cgattttcca ttactaaata acccaattac agtagcatca
     9541 tttaagctgg tttcagtata tccactaaag catgttttac tgtccacttt aatcacattg
     9601 ttataatctg tgccaaagct actgctggct ttcgcacgct cacgttgtgc ggtcatttct
     9661 gcattgaagc cgtcttcgtc aattttaata tcacgttcac ggcaaacatc tgcggttaaa
     9721 tctaacggga agccataagt atcataaagt ttgaacgcaa cttcgccaga taaggtgtta
     9781 ttttcaacct tcgctaatgc ttcttctaat aaattcaatc cacgctcaag agtacgggca
     9841 aattgctctt cttctgcttt gagtgtcttt tgaatatgcg cttgtttttg ggtcagcacc
     9901 tcaccagctt gccccattac cgttgcaagt gttggcacca atttatagaa aaaggcttct
     9961 tttgcaccca aaatattacc gtgacgaacc gcccggcgga taatacggcg taatacatag
    10021 cctcttcctt catttgaagg taaaacacca tcggcaatca gataggaaca agcacgaata
    10081 tggtctgcca ctacacgtaa agatttatta tctaaatctt tcacattaag caaagtagcg
    10141 acttctttaa ttaaagtttg gaaaatatcc gtttcgtagt tggagtttac gtgttgcatt
    10201 accgcagtca tacgttctaa ccccatccct gtatctacag aaggcttagg cagtttttcc
    10261 atcgtaccgt ctgctaaacg attgaactgc ataaatacaa tattccatac ctcaatatag
    10321 cggtcgccat cttcttctgg gctacccggt aagccacccc aatgttcagg cccgtgatca
    10381 tagaaaatct cggtacaagg gccacaaggg ccggtatcgc ccatcgccca gaagttatct
    10441 gaagcataag gtgcgccttt attatcgcca atgcgaataa tatgttccga tggtacacct
    10501 acttctttat gccaaatatc gtaggcttca tcatcagttt catacacagt tacatataat
    10561 ttttcttttg gtaagccaag ccattgtgga gaagttaaaa actcccaacc gaatttgatt
    10621 gcatcttgct tgaagtaatc accaaagctg aaattcccca tcatttcaaa aaaagtatga
    10681 tggcgagcgg tataacctac gttttctaaa tcattgtgtt taccacctgc acgtacacaa
    10741 cgttgtgccg tagtcgctct gctataaggg cgtttttcta acccaagaaa aacatctttg
    10801 aattggttca tgcccgcatt ggtaaataat aatgtcggat cattctcggg aacaagagag
    10861 ctgcttggaa caatcgtatg tcctttagtt tggaaaaact ctagaaaaga ttgtctgata
    10921 tctgaagttg ttttcattaa aaatcactct ttttgtaaat agaagttaaa catttagtta
    10981 tcttgctatt ttaca
//
LOCUS       DANLVT010000081        10850 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.081, whole genome shotgun sequence.
ACCESSION   DANLVT010000081 DANLVT010000000
VERSION     DANLVT010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10850)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10850)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10850
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.081"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(157..987)
                     /gene="fghA"
                     /locus_tag="PXC99_001768"
     CDS             complement(157..987)
                     /gene="fghA"
                     /locus_tag="PXC99_001768"
                     /EC_number="3.1.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HDL5418203.1"
                     /translation="MQQFENYRCFSGEQQVWQHFSASLNCEMKFAIYLPQSAKTQKLP
                     VLYWLSGLTCTEQNFITKSGFQRYADEHHLIVVAPDTSPRGVNVANDEAYDLGQGAGF
                     YLNATQGEWTTHYQMYDYIVSELPTLINAHFPTNGKQSIFGHSMGGHGALTIAFKNPG
                     QYQSVSAFAPIVAPTQVPWGQKAFLAYLGEDQTAWKAYDSVALLEKYRPSLPILIDQG
                     SQDSFLSDQLKPEIFCETADRLGIPYQFNLRDGYDHSYYFISSFIGEHIAFHAKHLKD
                     "
     gene            complement(1067..2125)
                     /locus_tag="PXC99_001769"
     CDS             complement(1067..2125)
                     /locus_tag="PXC99_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HDL5418204.1"
                     /translation="MAYPIKSYATFSATTPLAPHSFERRELLEDDVLIDILYCGVCHS
                     DLHMARNDWGWTQSYPLVPGHEIIGRIIKVGKNAKKFQIGDLVGVGCMVDSCRECSPC
                     QHGLEQYCEVGNIGTYGGIDRFDGTPTQGGYSTCVVVSEDFVLKVSENLDTKAVAPLL
                     CAGITTYSPLRHWNVKAGSKVAVVGLGGLGHMAVKLAKAMGAEVTLFTRSLGKADDAY
                     RLGASRVVLSTDEKQMADVANTFDLIIDTVPYTHDLKPYIPTLALDGTLVLVGLVGEL
                     EQTINTVPMILGRRSISASVIGGIQETQEMLDFCAEHNIVPDVEMIDMQNINDAYERM
                     LKSDVKYRFVIDMGSLKG"
     gene            complement(2312..3247)
                     /locus_tag="PXC99_001770"
     CDS             complement(2312..3247)
                     /locus_tag="PXC99_001770"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03571 family LLM class oxidoreductase"
                     /protein_id="HDL5418205.1"
                     /translation="MNTLSPIFSQVFGQNQLTLGLIAPFMGYQNHIPDNLTTIADNAR
                     LAENLGFSALWVRDVPFYDPHFGDVGQGLDPMVTLGFLSAHTQNIALGTAGLIAPLRS
                     PIHIAKMATSVDSLSHGRFLLGLSSGDRPVEYPAFGADFASRSERFRESIDLINTLTE
                     QDFPHFKGKHYADLTDNLDLLPKPKHRLPIVAIGRARQEMDWLANVPDAWIWHGVNPA
                     DTANIINTLADLRQKDTPTAFGYAQFVEVLDDKNAKAQLFNNIYLRGGAKGLADFWAK
                     EQEKGVKHLALNLKPTQRPADEVLTELAEYALTQF"
     gene            complement(3527..3838)
                     /locus_tag="PXC99_001771"
     CDS             complement(3527..3838)
                     /locus_tag="PXC99_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL5418206.1"
                     /translation="MSETEKQAINAPNAVMNGYLTMHYPDWFKPDGIYFNDGAFESFE
                     SSHKLTKDGKIRLVPTAGHTLGHLAVVVDMGEHYILIGGDASYSEQDMLAGNIDGVCN
                     A"
     gene            complement(3845..4237)
                     /locus_tag="PXC99_001772"
     CDS             complement(3845..4237)
                     /locus_tag="PXC99_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL5418207.1"
                     /translation="MIKVHCLTTGWVQIKIHHQVARFFARPARVLDVLTDKKWSPKLP
                     IGCWLIEHDDGLILVDTGESSRANDKGYQPWWHPFMQFCERRGVKKHEEVGEILKANG
                     FDPLRIDTVVMTHMHGDHAGGLPNFPNS"
     gene            4369..4929
                     /locus_tag="PXC99_001773"
     CDS             4369..4929
                     /locus_tag="PXC99_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HDL5418208.1"
                     /translation="MNDLRVIKTHLAIQNALIELLDEKLFEKVQVQEIIEKALINRTT
                     FYRYYSGESDLVGKLIKEVKAEYQDLLKKRFESGNLLRFMQTIGNRLLEKRRLILALW
                     QIKTPRHHLYDDMHMLLKNAFIAHAKRITSDDKNWAEKNWDYQAHIFATIALESHKYY
                     FEQGKLLPIPQVFEEWIEMVQVLKSV"
     gene            complement(4995..5984)
                     /locus_tag="PXC99_001774"
     CDS             complement(4995..5984)
                     /locus_tag="PXC99_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HDL5418209.1"
                     /translation="MSKQIQFTKTGSPDVLQIVDVAIPAPKAHEVQIQIQAIGLNRAE
                     MMYREGAYVIDPVFPATLGYEGAGVIVAIGEGVNEVAISDKVSIIPSFMFTEYGTYGE
                     IVNMPKHAVVKHPDNLSMEQASASWMAFVTAYGGLIEFGKVQKGDFVVLGGATSSVGL
                     ASIQIAKMQGATVIALSRTHAKGDVLLEKGADFVIATSEDDVTAKLFEITNGKGVNVV
                     FDPVGRKEAAKIINAMAQDGRYIIYGALSHDDIAVPVFPILGKHLTVRGYELFEITTV
                     PEKLAQAKTFVYDGLASGQLRPEIDKIFAFDEMVKAHEYMASNQQIGKIVVKV"
     gene            complement(6198..7115)
                     /locus_tag="PXC99_001775"
     CDS             complement(6198..7115)
                     /locus_tag="PXC99_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5418210.1"
                     /translation="MTFIIGILAGVLIAFQSAINARLRMHVGAAFLTSFVSFSVGLLF
                     LLGLSLIMQQTPAFSLDNLGNVPLWAWTGGLLGMVGLTANVLIFPKLGGVQTAVMPIL
                     GQVLMGVLIDTFAWLNSPYIAFTASRLFGIGLVLFGVWIAVVLPHLSGLKRKENANLW
                     LWRAVGILGGTALATQAAVNGEFGRQPGSSLGAATVSFGVGAIGLLLVVLFYEKSLPK
                     LCQPTEGKPFWIWSGGILGSLFILAGVWLVPQIGTGSVVMLVLSGLICGSLLVDKFGL
                     FGITQKPILPLQIIGVTLLLAGVAFIRLL"
     gene            complement(7251..7910)
                     /locus_tag="PXC99_001776"
     CDS             complement(7251..7910)
                     /locus_tag="PXC99_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003672168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL5418211.1"
                     /translation="MQFFNKEDVINAFHYRASTRSYDGSRKIPAEDFNYILELGRLSP
                     SSVGSEPWQFLVLQNPELRQKIKPYCWGIPTMETSSHIVVILAKKNARYDSQYFSEIM
                     DRRGLQGEAREKAMAVYKKFQEKDIGILDSERSLFDWASKQTYIALGNMMTGAALIGV
                     DSCPIEGFAYQEVNDILAAEGLFDPSEWGVSVMCTFGYRDKEIRQKARKDFETVVKFI
                     E"
     gene            complement(8095..9159)
                     /locus_tag="PXC99_001777"
     CDS             complement(8095..9159)
                     /locus_tag="PXC99_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavin oxidoreductase/NADH oxidase"
                     /protein_id="HDL5418212.1"
                     /translation="MAKFRKLFTPFNIKNLALKNRVVMPPMCQYSATNGVPNDWHFVH
                     YTSRAVGGVGLIIVEMTNVAPNGRITPNCLGLWNDEQQQAFKKLVDSVHAQGAKIGVQ
                     IAHAGRKAQDEPDAVAPSAIHYGELDYAGQNLITPRELTTDEVKALVQAFKDSVKRAV
                     EAGFDTIEIHGAHGYLIHQFYSPKSNQRSDEYGQDKMLFGEQVIQAAREVMPSEMPLI
                     VRISAQEYGENGFGLDYGLQVAKRFADAGADVLDISGGGDGVLHAGNHPEFYAGYQVD
                     FARQVKLATGKPVIAVGMLDNPAVGDHILGMGDADLVAVGRALLRDPYWVLNAQYDQN
                     AADSSEMQFVPKQYERGLFM"
     gene            9250..10158
                     /locus_tag="PXC99_001778"
     CDS             9250..10158
                     /locus_tag="PXC99_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5418213.1"
                     /translation="MSDIRTLDFNLLKAFVVLLDECNVSRAAQRLSITQPAMSGILNR
                     LRESFNDPLFVRVQHGMQPTDRALQLGQTARNILQDISSMLQPPILEPEHLNMTLRIA
                     AMDYVQQIIALPLILRLRRLAPNVKVALLPVQGQNIKTLFEQKKIDLALVSRQHLSTD
                     TLKTVLYEERYVCAMSKTHPMAQTPLSLDQFCNLPFAMLSYNGGEFSGATDLALQKIG
                     LQRKVMVSVNHISLLPQLLQGSDLVAVLPERLAKTLPNVYLQPPPIEVEGFTMMMAWH
                     ERTEQDTAHRWLREVLQGVVKPKQAL"
     gene            complement(10228..10779)
                     /locus_tag="PXC99_001779"
     CDS             complement(10228..10779)
                     /locus_tag="PXC99_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL5418214.1"
                     /translation="MAKQIAVLIGSGSKTSFSHLTVRHLQKMAPASIQLNIVDIADLP
                     LYDRDLDENSPAQYTRVREAVAVADGVLLVTPEHNASFSAMLKNAIDVVSRPMGQSKW
                     IGKPAGIVTVGASPAGGVRAADQVRTITSGSFVNMPTLPFALNVGNLFTGVFDEQGEI
                     ASETLKSSMQNFINAYAQFVEKY"
BASE COUNT         2998 a         2479 c         2344 g         3029 t
ORIGIN      
        1 ttattaaagc acgacttttg ttgtatttca aacctttgtt tttatacaaa acaaccgtgt
       61 tgtaaaaaat gatcgtaaac tgaccgcttg taatgcactc tgaatatatc gaaacatgat
      121 aaaaatgata aagcatgttt cgataattta ctgtctttag tcttttaaat gttttgcatg
      181 aaaggctata tgttcaccga taaagctact aatgaaatag tagctgtgat cgtaaccatc
      241 acgtaaattg aattggtagg gtattccaag tctatctgcg gtttcacaga aaatttccgg
      301 ctttaactga tcgctcaaaa agctgtcttg gctgccttga tcgattagaa ttggcaagct
      361 tgggcgatat ttttccagca atgccacgct atcatacgcc ttccaagcgg tctgatcttc
      421 gcctaaatat gctaaaaatg ctttttgccc ccaaggaact tgggttgggg cgacaatcgg
      481 tgcaaatgcc gatacacttt gatattgccc cggattttta aatgcaatgg ttaaggcacc
      541 atgtccgccc attgaatgcc caaaaattga ttgtttaccg ttagtcggga aatgagcatt
      601 aatcaatgtt ggcagttcgc tgacaatgta atcatacatt tggtaatgtg ttgtccattc
      661 gccttgcgta gcatttaggt aaaatccggc accctgacct aaatcataag cctcatcatt
      721 agcgacattc acacccctag ggctggtatc cggtgcgacc acaatcagat gatgttcgtc
      781 ggcataacgt tgaaagccag atttagtgat gaagttctgc tcggtacagg ttaaaccaga
      841 aagccaatat agtacgggta gcttttgtgt tttagcagat tgcggcagat aaatagcaaa
      901 tttcatttca cagtttaagc tggctgagaa atgttgccaa acctgttgtt caccgctaaa
      961 acagcggtag ttttcaaatt gttgcataat attccttaca agcggtttaa ttccgctgat
     1021 tttttgcaaa aataaaggcg gaactcaccg cctttatatt gtaatatcaa cctttcaaac
     1081 ttcccatatc aatcacaaac cgatatttca cgtctgattt cagcattcgt tcataagcat
     1141 cattgatgtt ttgcatatca atcatttcca catccggcac aatgttgtgt tcggcgcaga
     1201 agtcgagcat ttcttgagtt tcctgaatgc cgccgatgac agaggcggaa atagagcggc
     1261 ggcctaaaat catcggtacg gtgttgatgg tttgctccaa ctcaccgacc aagcccacca
     1321 gcaccaatgt gccgtccaac gctaaggttg ggatataagg tttcaagtcg tgggtataag
     1381 gcacggtatc gatgattaaa tcaaaggtat ttgcaacgtc tgccatttgc ttttcatcgg
     1441 tagaaagcac cacacggctt gcgcccaaac ggtaagcatc atcggcttta cccagtgagc
     1501 gagtaaaaag cgtaacttcc gctcccattg ctttggcaag tttaaccgcc atatgcccca
     1561 gtccgccaag ccccacaaca gcgacttttg agccagcttt gacattccaa tgacgcaggg
     1621 gcgaataggt ggtaatgcct gcacacaaaa gaggggcaac cgctttggtg tccaagtttt
     1681 cagagacttt taatacaaaa tcttcactca ccaccacgca tgtgctgtaa ccgccttgtg
     1741 ttggtgtgcc gtcaaagcgg tcaataccgc cataagtgcc gatgttgccc acttcgcagt
     1801 actgctccaa accgtgctgg caaggactgc attcacggca ggaatccacc atacaaccga
     1861 caccgaccaa atcgccgatt tggaattttt tggcgttttt accgactttg ataatacgac
     1921 cgatgatttc gtgccctggt acaagcggat agctttgcgt ccagccccaa tcattgcgag
     1981 ccatatgcaa gtctgaatgg cacacgccac agtacaaaat atcaatcaaa acatcgtctt
     2041 caagcaattc acggcgttca aaactgtgtg gggcaagtgg tgtggttgcc gaaaaagtgg
     2101 cgtaggattt gatagggtaa gccatttttg gggtttaaat ggctgaaatg gcaattacta
     2161 tagtgccgat gatttattat tgaaaatcaa gatttttgat aaatcggtat cagttaaaat
     2221 gataattggg ggttttcaga ctgactgaaa aattattttg cccattttaa aaacaaaaac
     2281 accgccctca tcacaaaagc ggtgtttttc atcaaaattg tgtcaaagca tactctgcca
     2341 attctgtaag cacttcatca gcaggacgct gagtgggttt taaattgagt gccaaatgtt
     2401 tcacgccttt ttcttgttct tttgcccaaa agtctgccaa gccttttgca ccaccacgca
     2461 gataaatgtt gttaaataac tgtgctttgg cgtttttgtc gtccaaaact tccacaaatt
     2521 gagcatagcc aaatgctgtg ggggtgtctt tttggcgtaa atcggcaagg gtgttgatga
     2581 tgtttgcggt gtcggcagga ttcacaccgt gccaaatcca cgcatcaggt acattagcaa
     2641 gccagtccat ttcttgcctt gctcgtccaa tcgccacaat gggcaagcgg tgtttgggtt
     2701 tggggagcaa atccaaattg tctgttaaat cggcataatg tttgcctttg aaatggggaa
     2761 aatcctgctc ggttaaggtg ttaatcaaat caatgctttc acgaaaacgc tcgctacgag
     2821 aggcaaaatc cgccccaaat gcagggtatt ccacaggtct atcgccagag gataagccca
     2881 ataaaaaccg tccatgactc aaactatcca cacttgtcgc cattttggca atgtgaatgg
     2941 gactacgcaa aggggcaatc agccctgccg tgccaagggc gatgttttgg gtgtgggcgg
     3001 acaaaaaacc aagtgtaacc atcgggtcaa gcccttgccc cacatcgcca aaatgagggt
     3061 cataaaacgg cacatctcgt acccacaatg ctgaaaagcc caagttttca gccagccgtg
     3121 cattgtcggc aatggtggtc aaattgtctg gaatgtgatt ttgatagccc ataaaggggg
     3181 caattaagcc cagtgttaat tgattttgcc caaaaacttg ggagaaaatg ggggaaagcg
     3241 tgttcatttt ggcgtacctg tcttatttaa gataaggtat tttaagggct tttgagtttg
     3301 cttaaaatgg gataaattga gaaagtgttt tgctaaattg gcataaatag acgctttcaa
     3361 gctgactgaa aatttgcaaa atttttaata aaaatgaccg cttgcctttc aacaagcggt
     3421 cattcccctt taatttttta ccaccgtaaa caccttattt ttcagccgat attcactttt
     3481 ttcatcgtga gccagttgca caatggttgg cttgcgttta cacaattcac gcattgcaca
     3541 cgccgtcaat gttgccagca agcatatctt gttcagagta agaggcatcg ccgccaatca
     3601 aaatataatg ctcgcccata tccaccacca ccgccaaatg ccccagcgta tgtcctgcgg
     3661 ttggcacaag gcggattttg ccgtctttgg tgagtttatg actgctctca aaactttcaa
     3721 acgccccatc attaaaatag atgccatcag gcttaaacca atcaggatag tgcattgtta
     3781 aataaccgtt catcaccgca ttgggggcgt tgattgcctg tttttcagtc tcactcatca
     3841 caaatcagct gtttgggaaa ttgggcaatc cgcctgcgtg gtcgccgtgc atatgggtca
     3901 ttaccaccgt gtcaatgcgt aaagggtcaa agccgtttgc ctttaaaatt tcgcccactt
     3961 cttcgtgttt tttgacccca cgccgttcgc aaaactgcat aaacgggtgc caccacggct
     4021 gatagccctt gtcgttggca cgactgcttt cgcccgtatc caccaaaatc aaaccgtcat
     4081 cgtgttcaat cagccagcaa ccaatcggca gtttaggcga ccatttttta tcggtcagca
     4141 catcaagcac acgggcagga cgggcaaaaa agcgtgccac ttgatgatga attttgattt
     4201 gtacccaacc tgttgtcaga caatgcactt taatcatttt tgtgttctca ttaaaaaatc
     4261 gtgggcatat tgtagaaagt gcggtaactt ttcacaaaca ttaaaaagtt cgtatttggc
     4321 tggatatgca gataaaatta caaaaatgta tgcttatttt gaaaaaagat gaacgattta
     4381 agagtaatca aaacccatct agcaatccaa aacgctttga ttgaattatt agatgaaaag
     4441 ctgtttgaaa aagtgcaagt ccaagaaatc attgaaaaag ccttgattaa ccgcaccact
     4501 ttttaccgtt attattcggg cgaaagtgat ttggtcggca aattgataaa agaggtgaag
     4561 gcggaatatc aagacctgct caaaaagcgt tttgaaagcg gtaatttgct gcgatttatg
     4621 caaaccattg gcaaccgctt attggaaaaa agacggctga ttttggcact ttggcaaatc
     4681 aaaacccctc gccatcattt gtatgacgat atgcacatgc tgttaaaaaa cgcctttatc
     4741 gcccacgcca aacggataac atcagatgat aaaaactggg ctgagaaaaa ttgggattac
     4801 caagcccata tttttgccac cattgccctt gaaagccata aatattattt tgaacaaggc
     4861 aaacttttgc ccattccaca ggtgtttgag gagtggatag aaatggtgca ggtgttgaaa
     4921 agtgtttaga aataactggt aaaattttcc ataaaaaaca ccgctttcat cacaaaagcg
     4981 gtgctttcaa atcatcaaac cttaaccaca atcttaccaa tctgctgatt gcttgccata
     5041 tattcgtgag ctttaaccat ttcatcaaag gcaaagattt tgtcaatttc agggcgtaac
     5101 tgaccgcttg ccaaaccgtc atagacaaag gttttggctt gtgccaattt ttcaggtacg
     5161 gtggtaattt caaagagttc atacccccgc acggtcaaat gcttacccaa aatcgggaac
     5221 actggcacag caatatcatc atggcttaac gctccataaa tgatgtaacg accatcttgt
     5281 gccattgcat tgatgatttt tgccgcctct tttctgccca cagggtcaaa taccacattg
     5341 acgcctttgc cattggtgat ttcaaaaagt ttggcggtta catcgtcttc gcttgtggca
     5401 atcacaaaat ccgctccttt ttccaaaagt acatcgcctt tggcgtgggt gcgagacaag
     5461 gcaatcacgg ttgccccttg cattttggcg atttggatac tggctaaacc aaccgaactg
     5521 gttgcaccgc ccagcaccac aaaatcgcct ttttgtactt tgccaaactc aatcagtccg
     5581 ccataagcgg taacaaacgc catccaactg gcggacgctt gttccattga caaattatca
     5641 gggtgcttga ccacagcgtg ttttggcata ttgacgattt cgccataagt gccgtattcg
     5701 gtaaacataa aggacggaat aatgctcacc ttatcgctaa tggcaacttc gttcacaccc
     5761 tcgccaatcg ccacaatcac accagcccct tcataaccca aagtcgcagg gaatacaggg
     5821 tcaatcacat acgccccttc acggtacatc atttcggcac ggtttaagcc aatggcttgg
     5881 atttggattt gtacttcgtg tgcttttggt gcaggaattg ctacatcaac gatttgcaag
     5941 acatcaggcg aacctgtttt tgtaaattgg atttgtttgc tcattgtttt gaccttttgt
     6001 gtaaataatg ggcgtatttt aatgcaatga atttatttta aacacaacat caattgcaaa
     6061 acacttttgc taaatttaca taaatacatt ttcacaatgt ctgaaaagtt gttttgcaaa
     6121 ttttaaaaag aaaaccaccg cttgccgatc acaagcggtg gtttttgtgg gttattttgc
     6181 aagaggtgtc agcttggcta cagtaagcgg ataaatgcga cgccggctaa gagtaaggta
     6241 acgccgatga tctgcagcgg tagaatgggt ttttgtgtaa tgccgaacag accgaattta
     6301 tctaccagca ggctgccgca aatcaggcca gagaggacga gcatcaccac cgagcctgtg
     6361 ccgatttggg ggacgagcca aacgccagcg aggataaaca ggctgcccag tatgccgccg
     6421 ctccatatcc aaaacggttt gccttcggtt ggctggcaga gtttcggcag gcttttttca
     6481 taaaacagca ctaccagtaa taagccgatg gcaccgacac cgaaggagac tgttgctgcg
     6541 ccgagtgatg agccgggctg tctgccgaat tcgccattaa cggcggcttg ggttgctaat
     6601 gcggttccgc ctaatatgcc gactgcgcgc cacagccata aatttgcgtt ttctttgcgt
     6661 tttagaccgg acagatgggg cagtaccacg gcaatccata cgccgaataa gactaaacca
     6721 atgccaaaca ggcggctggc cgtgaaggct atgtaaggcg agttaagcca agcgaaagtg
     6781 tcgatcagca cgcccatcag cacttggcct aaaatcggca tgaccgcagt ttgtacgccg
     6841 ccgagcttgg ggaagatcag tacgtttgcc gttagcccca ccatgccgag taatccgccc
     6901 gtccatgccc ataaggggac gttgcctaaa ttgtcgaggc taaatgctgg tgtttgttgc
     6961 atgatgagcg agagtccgag tagaaacagg aggcctacgc tgaaagagac aaacgaggtt
     7021 aaaaatgccg cacccacgtg catacgcaaa cgggcgttga tggctgattg aaatgcaatc
     7081 agcacgccgg ctaaaatacc gataataaat gtcatgacta actgggttgt gctgccgcct
     7141 caaaatgagt ggtggttgaa aagaaatgcc gtctgaatgc ggattcagac ggccttaagg
     7201 cttggtatcg gcgtttacct gatgttgaat agccgttttg cctagccggt ttattcgatg
     7261 aatttcacca cggtttcgaa atctttacgt gctttttggc ggatttcttt atcacggtaa
     7321 ccgaaggtac acatcaccga tacgccccat tcgcttgggt caaataatcc ttccgctgcc
     7381 aaaatatcgt tgacttcttg gtaagcgaaa ccttctatcg gacaagaatc tacgccaatt
     7441 aaagctgcac cggtcatcat attgcccaat gcgatgtagg tttgtttgct tgcccagtca
     7501 aacaggctgc gttcgctgtc taaaatgccg atatctttct cttggaattt tttatacacg
     7561 gccatggctt tttcgcgcgc ttcgccttgt aaacctcgtc tatccataat ttcagaaaaa
     7621 tattggctgt cgtaacgggc atttttcttc gctaaaatca ccacgatatg gcttgaggtt
     7681 tccatagttg gaatgcccca gcagtaaggt ttgatttttt gccgtaattc agggttttgc
     7741 aacactaaaa actgccaagg ctctgagcct accgaacttg gacttaaacg accgagttcc
     7801 agaatatagt tgaaatcttc agccggaatt tttctgctgc cgtcgtaaga acgggtagat
     7861 gcacggtaat gaaaggcatt gattacgtct tctttgttga aaaattgcat ggaacactcc
     7921 taaaaatgca aaacagtctt ttcagacggt ctgaaaagtc tagatgaaat acggataagt
     7981 ataaaagatt taagttattt ttaataattg ataattttga tatttaggta taagttgacg
     8041 tgatgagaaa aaacagaccc tctgaatgtt caggcggtct ttaacgttgg ttgtttacat
     8101 aaataatccg cgttcatatt gcttcggtac aaactgcatt tcactgctgt ctgctgcatt
     8161 ttggtcatat tgcgcattca atacccagta cggatcgcgc aataaggctc ttcccacagc
     8221 cactaaatcc gcatcgccca tacctaagat atgatcgcct accgccggat tatccaacat
     8281 acctactgca attaccggtt tgcccgtagc gagcttcact tgacgggcaa agtctacttg
     8341 gtaacctgcg taaaattcgg ggtgattacc tgcatgcaat acaccatcac caccaccgct
     8401 gatgtctaag acatctgcgc ctgcatcggc aaaacgtttc gctacctgca aaccataatc
     8461 caagccaaag ccgttttcac cgtattcttg tgcagaaatg cggacaatta acggcatttc
     8521 agacggcatc acttcacgtg ctgcctgaat cacttgctcg ccaaacaaca ttttgtcttg
     8581 gccgtactca tcactgcgct gattggattt cggcgaatag aattggtgaa ttagataacc
     8641 gtgtgcgccg tggatttcaa ttgtatcaaa gcctgcctca acggcacgtt tgaccgaatc
     8701 cttaaaggct tgaaccaatg ctttgacttc gtctgtcgtc agctcgcgag gtgtaatcag
     8761 attttgtccg gcataatcca actcaccgta gtgaattgca cttggagcca ctgcatccgg
     8821 ctcgtcttgg gctttgcgtc cggcatgggc gatttgcaca ccgatttttg ccccttgagc
     8881 atgaacgctg tctaccagtt ttttgaatgc ctgttgttgt tcatcgttcc ataagcctaa
     8941 gcagtttggc gtaattctgc cgtttggcgc cacattggtc atctccacaa taatcaagcc
     9001 gacaccacct actgcacggc tggtgtaatg cacgaaatgc caatcgttcg gtacgccgtt
     9061 ggttgccgaa tattgacaca ttggtggcat aaccacacgg tttttcaatg ctaagttttt
     9121 aatgttaaac ggggtgaata attttctgaa cttcgccatg ttgccttcct taatgaaata
     9181 gattaggtgg aatgataatt cagtgctatt atctattcaa attgattatt gtgatagtta
     9241 ggtataaaaa tgagtgatat aagaacactg gatttcaatt tgctcaaagc ttttgtggtg
     9301 ctgctggacg aatgcaacgt tagccgggca gcacaacgat tatccatcac ccaaccggca
     9361 atgagcggta ttttaaaccg cttgcgcgag agttttaacg atccgttatt tgtgcgagtg
     9421 caacacggta tgcagccaac cgaccgcgcg ttgcaactgg ggcaaaccgc acgcaacatt
     9481 ctgcaagata tcagctccat gctgcaacca cccatattgg aaccggaaca tctgaatatg
     9541 accttgcgta ttgccgcaat ggattatgta caacaaatta ttgccttgcc gctgattctg
     9601 cgtttaagac ggcttgctcc gaatgtaaaa gtcgccttac tgccggtgca ggggcaaaat
     9661 atcaaaactt tgttcgagca aaaaaaaatc gatcttgcct tggtcagccg ccaacattta
     9721 agcacggata cgctgaaaac ggtattatat gaagaacgct acgtatgcgc gatgagcaaa
     9781 acacacccga tggcgcaaac accgctatcg ctcgatcaat tctgcaatct tcccttcgca
     9841 atgctttctt acaacggcgg agaattcagc ggagctacgg atctagcgtt acaaaagata
     9901 ggactacagc gcaaagtaat ggtctcggta aaccatattt ccctgctgcc ccagctgcta
     9961 caaggttccg acttagtcgc agtattgccc gaacgcttag caaaaacctt acccaatgtt
    10021 tatttacaac ctccgcctat agaggtagaa ggcttcacca tgatgatggc ttggcacgaa
    10081 agaaccgaac aagatacggc gcatcgatgg ttaagagagg tgctgcaggg tgtggtaaaa
    10141 cctaaacagg ctctttaatt attctttctt ttgctatgaa aaaagccgtt tatattttta
    10201 gataaacggc ttttttgcat tctaatatta gtatttttct acaaactgag cataggcatt
    10261 aatgaagttt tgcattgagc tttttaatgt ctcagaggca atttcaccct gttcatcaaa
    10321 tacgcctgta aataagtttc ctacgtttaa tgcgaaaggt aaggttggca tatttacaaa
    10381 tgagcctgaa gtaatagtac gtacttgatc agctgcacgt acaccgcctg ccgggcttgc
    10441 gccaacggtt acgatacctg ccggtttgcc aatccatttg ctttgcccca ttgggcgaga
    10501 aaccacgtca atcgcatttt taagcattgc agaaaagctt gcattatgct caggtgtgac
    10561 taataacacg ccatctgcca cagcaaccgc ttcacgcact ctggtgtatt gtgccgggct
    10621 gttttcatct aaatcacggt cgtaaagtgg taagtctgca atatccacaa tgtttaattg
    10681 aatgcttgca ggtgccattt tttgtaagtg acgaacagtc aagtgactaa atgaagtttt
    10741 gctgccgcta ccaattaata ctgcaatttg ttttgccatt ttataattcc ttagtacata
    10801 gagaatatag gcattttatc cctttcaatc tgtttcataa agcgcttatg
//
LOCUS       DANLVT010000082        10814 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.082, whole genome shotgun sequence.
ACCESSION   DANLVT010000082 DANLVT010000000
VERSION     DANLVT010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10814)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10814)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10814
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.082"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            35..367
                     /locus_tag="PXC99_001780"
     CDS             35..367
                     /locus_tag="PXC99_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL5418215.1"
                     /translation="MALSVSSILSSQATYAEETTAELSEVNVVAKEDVKASIEKKNKE
                     IIQQELIQNNRDLVRYSPDVGIVNQGRHQKGFAIRGVEDNRVGISIDGVSLFLIQKKI
                     PFINAMVI"
     gene            334..2412
                     /locus_tag="PXC99_001781"
                     /pseudo
     CDS             334..2412
                     /locus_tag="PXC99_001781"
                     /inference="COORDINATES: protein motif:HMM:TIGR01786.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
     gene            2467..2973
                     /gene="hutX"
                     /locus_tag="PXC99_001782"
     CDS             2467..2973
                     /gene="hutX"
                     /locus_tag="PXC99_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization cystosolic carrier protein
                     HutX"
                     /protein_id="HDL5418216.1"
                     /translation="MISIEQQTALRNELAENPGQILEMLAAKYQCTLEEVMLNLPAEM
                     LKVTEGERFAEVLQQIHEWDDAITLISHTEDTIIEFVGKLPSGSISRGFYNFEHKEGG
                     GLQGHLRYENCAKIYLLDRPFMGKRTVSLIFINKKGNAMFKIFVGREKIGGALKEHQI
                     KALYQLIG"
     gene            complement(3053..4270)
                     /locus_tag="PXC99_001783"
     CDS             complement(3053..4270)
                     /locus_tag="PXC99_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine transporter"
                     /protein_id="HDL5418217.1"
                     /translation="MKNKILGSALMIAGTTIGAGMLAMPLTSAGMGFGATALLLVGLW
                     ALLAYTGLLFMEVYQTAPQKDVGVASLAEQYFGLIGRVLATFSLLVLLYALLAAYITG
                     GGSLLAGVMPEMADADMKLKISILIFTAVLGTFVVVGVKSVDGLTRVLFLGKIVAFIA
                     VLLMMLPKAKLENLTAIPLDNLLIISAIPIFFTAFGFHVIMGTINSYLDADIGKIRKS
                     IYIGTAIPLVAYLLWQLATHGVLSQNEFTTILTQDPTLNGLVKATSQITGSTILGEMV
                     RLFSVLALITSFLGVSMGIFEGVGDLLKRLNLPTNRLWLTIATFTPPILFALFYPNGF
                     IKALGYAGLLFAFYGMILPIGLAWKARRQYPNLPYRVIGGNLALVVALIAGIIIMVIP
                     FLIQAGYLPQAVG"
     gene            4431..7964
                     /gene="mfd"
                     /locus_tag="PXC99_001784"
     CDS             4431..7964
                     /gene="mfd"
                     /locus_tag="PXC99_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HDL5418218.1"
                     /translation="MSLISLNLPKSDGNFQDHQTLGNLVGHSDTLAISQAARAFYGLT
                     VVVTPDTRTALRLEKALPQFAGLPVQLFPDWETLPYDNFSPHQDIISARLSALFELQQ
                     GRQQILLLPINTLMQKVCPPNYLANNVLLIKKGDRFSIQKLRLQLENAGYRAVEQVLE
                     YGEYAVRGSILDLFPMGAEEPFRLDFFDDEIDSIRTFDVDNQRTKTEIAEINLLPAHE
                     FPTDSNGIEHFRAKFREKFGEIRREPEHIYQQVSKGILNAGIEYWQPLFFEEMASLFD
                     YFPAQTLFITFADIQQKAEQFHQDTQNRYESHRVDPMRPLLPPSDLWFAIDEVNRWLK
                     GYPRLTITSEKIRKSAAKMNANVANLPDIAIQSSAKEPFSAFQQFRQKFDGNILFSVE
                     SEGRRETLLDLLAPLGVKPKQVNSLDEAQGLPFSLIISPLDQGFVVETGGHGTRPYDD
                     ELNTNGENDNNYVGAGPVPARNLAIICETDLLGERVQTRREKNRKAVNPDTLIRNLAE
                     LKIGQAVVHLENGVGRYGGLTVLDAGGIKAEYLVLHYANDAKLYVPVASLHLISRYIG
                     GADETAPLHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQTGFAFAYDKAEFDQ
                     FSATFPYEETDDQKIAINAVISDMCQAKAMDRLVCGDVGFGKTEVAIRATFLAVMNHK
                     QVVILAPTTLLAQQHYENFKDRFANYPVNVEVLSRFKTAKEQKTILQNVAEGKVDILV
                     GTHKLLQDDVAFRDLGLLVIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMA
                     LNGMRDLSIIASPPARRLLIKTFVRQSDEMVIREAILREILRGGQVYYLHNDVATIEN
                     CAEKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANT
                     IIIERADKFGLAQLHQLRGRVGRSHHQAYAYMLTPHPKTLTKDAEQRLEAMSTIDNLG
                     AGFALATHDLEIRGAGELLGSEQSGQIESIGFSLYMDLLENAVKALQEGREPSLDEIT
                     QHQAEIELRVPALLPDDYLPDVNMRLSFYKRIASSENLQSLNDLKVELIDRFGLLPEA
                     TKNLFAITQLRLSAQTLGIKKIDAGIHGGYLEFKPTAQPDPMKFIALIQKQPAVYSFE
                     GAVKFKFRLALEDNRKRLEFVENLLREVVGG"
     gene            8127..8414
                     /locus_tag="PXC99_001785"
     CDS             8127..8414
                     /locus_tag="PXC99_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL5418219.1"
                     /translation="MEEINGFEWDSEKALRNQQKHGVSFIEAVSVFYDNNAMLIPDPD
                     HSSREERFLLLGRSNKDNLLVVVHCERNTNIRIISARLATKRESGQYKGVH"
     gene            8415..8627
                     /locus_tag="PXC99_001786"
     CDS             8415..8627
                     /locus_tag="PXC99_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HDL5418220.1"
                     /translation="MRDEYDFSNAVKNPYAKGLKSKSVVTIRIEDDVISYFKQLAEEV
                     NLPYQTLINLYLKDCVEQKRKPTISW"
     gene            8743..9003
                     /locus_tag="PXC99_001787"
     CDS             8743..9003
                     /locus_tag="PXC99_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HDL5418221.1"
                     /translation="MEKIARLFRNGRNQAVRLPVEFEFDAEQVYVSKKENGDILLSLR
                     SRNTEHWQRLFELLPAVVCDETFLDTKERNQSFEQRDPFEVA"
     gene            9004..9393
                     /locus_tag="PXC99_001788"
     CDS             9004..9393
                     /locus_tag="PXC99_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HDL5418222.1"
                     /translation="MYMLDTNTVSYFFRGNANVVAKLKSINPERLCISSVTAAELVYG
                     VAKRNNGQLSQFLDYFLSSVKVLDWNYRCAELYGKLRAEMEKNGKVMGVQDQMIASHA
                     LAEECILVSSDQAFKMVPDLKLENWLH"
     gene            9413..10651
                     /gene="pepT"
                     /locus_tag="PXC99_001789"
     CDS             9413..10651
                     /gene="pepT"
                     /locus_tag="PXC99_001789"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HDL5418223.1"
                     /translation="MKQSLLNRLLRYTQIHTTSDPKSQTVPSSQQQWDLLHLLKTEVE
                     AMGLSEIYLDPNGYLFASLPANIDKTLPVLGLIAHVDTSPDFNGENVKPQVIEAYQGG
                     NILLNGSGDYLSPTDFPNLNKLIGDTLVTTDGTSLLGADDKSGIAIILSAIEYLQANP
                     HIPHGKIRIGFTTDEEIGRGADHFDVNAFGADVAFTFDGGPLGELQYENFNADAATVT
                     FFGRSVHPGTAKGKMINALERACEFQHRLPPHLTPATSEGREGFIMLHGIEGGIDKAE
                     IHYILRSFERDELAAFGKMLNDTLAEMQQIYGEHCGKVEIVEQYRNMREVLDDYGYLV
                     EIAENAMREQGIEPNLEPIRGGTDGSRLSFMGLPCPNLFTGGENFHGRFEFISVDTME
                     KATKVVIDICRKFADYDFNK"
BASE COUNT         3247 a         2158 c         2472 g         2937 t
ORIGIN      
        1 ttcaataaag tctaaaaaat tgtgcccgac tatattggct ttaagcgtta gtagcatttt
       61 gtcttcacaa gctacctatg cggaagaaac aacagcggaa ttatctgaag taaatgttgt
      121 tgctaaagaa gatgtgaagg cttctataga aaagaaaaat aaagagataa ttcagcaaga
      181 gttgattcaa aataatcgag atttagttcg ttatagccct gatgttggca ttgttaacca
      241 aggtagacat caaaaaggat ttgctattcg tggagtggaa gacaaccgtg taggaataag
      301 tattgatggt gtctcgcttt tcctgattca gaagaaaatt ccctttataa acgctatggt
      361 aatttaaata catctcgcca atctatagat ccggaattag ctcgtactat tgaagtatct
      421 aaaggtgcag attctttcaa tcaaggtagt ggtaatttag gcggcggagt taattatcgg
      481 acgcttgagc cttatgatat tgttcgtaac ggtaataaat ttggtgcttt ttatcgcaca
      541 ggatatggta ctcgtaataa tgaatggttg aatacattcg gtgttggata tttaggtgag
      601 aaagctgagg cgatattggt ttattcaaat cgccatgggc atgaaatgaa aagtgcagga
      661 ggttatacac ttcctgaaga ttctctacaa actcgctctt tacgcagtag taaacaaact
      721 cctgatgatt ctactcataa tcatcataat tatttagcca aatttgctta tcgatttaat
      781 gataatcacc gcgttggtgt ttcttacagt gggcaaaata ataaaaatta tattatcgaa
      841 gattcagccg ttactattac ttctttttgg cgtgaagcgg aagaccgtag taaacgtgat
      901 acagtaaatg ttttttatga gtatttccca gagtcaaaat ggatatctct agcgaagata
      961 gatgcagatt atcaagatac tgaaacatct gcttataact atgaaggtac acgcgctgaa
     1021 gatgcaacag actggagccc tgctaaacaa agaaaaccaa gtgacaataa tattcgtatt
     1081 tttaatactg aattgaaacg cttaaatttc cgtttagaca gccaagcatt agaatttggt
     1141 aaatggactc atcagctatc tttcaaagcc tctactgcag agagagattt cgatgtatta
     1201 cataaggact cggtttattt atccggtgtt tgggtaaatt ctcccgattc tacgatgatg
     1261 tacccaatta aaacgaaaca gcacactttt tcattgcacg ataagattga tttaacgcat
     1321 gattggattg caacgctagg cattcgttat gattgggcga agtatgaaca acaagaactc
     1381 aatggtcttg tttgtcgtaa ctgcgtaaaa actgacaatg cgaaatttaa tcaactaact
     1441 tgggttaccg gtttagaaaa acatctgact gaggcatgga aagtaggata taacattggg
     1501 acaggcttcc gtattccaaa tgcatcagaa atgtattttg attaccgtga taatgctgca
     1561 ggagcttgga tgtccaatcc aaacctaaaa gcggaacgta gtttaagcca aaatttaagt
     1621 ttgcaaggta gtggcaatgt tgggctgctc tcagttaatt tccaccatac taaatataaa
     1681 gattttttat gggagcaaga aacctgggat gtttaccaag catatggtag agagttttgg
     1741 cgcccggtac agcaaatgca aaatattgat tctgcgaaaa tctacgggct agaagtgagt
     1801 ggtaaatgga atttaaattc agctatgcca atacctgaag gctggaagct atttggagcc
     1861 ttcggttaca gcaaaggtag tatgtctaac ggggcagatt tactttctat tcagccgatt
     1921 aaagccgtag ttggcttaga ttatgaacaa cctgaaggta aatggggagt attttctcgc
     1981 ttcacattct tgggggctaa aaaggcgaaa gatgcaaaat atttaaaaac attaccggaa
     2041 aaatgcctta aagaggatag aacgccaaat ccgtattacc cttattgggg ggatgaatat
     2101 gacattcgtt gtactgaata ttctcacgag acaggtttag atacctggaa gcacttaaat
     2161 gctaaagcct ttgttgtgga tttatacggt ttctataaac caactgagaa tattacatta
     2221 cgtgccggta tttataattt gtttaaccgt aaataccata cttgggatac tttacgtggt
     2281 ttaaatacaa caggtggaat cgttaattct gttggagtac gtgaaaatgc aacttacggt
     2341 ggctatcctg gattacaacg ctattatgaa cctggacgta acttctcggc taattttgaa
     2401 taccgtttct aatttacaaa tttacttaga gagctaagaa actctcttta cttaaaggaa
     2461 catttaatga tatcaatcga acaacaaacc gccttacgca atgaattagc cgaaaatccg
     2521 gggcaaattt tagaaatgtt agcggcaaaa tatcaatgca cgctggaaga ggtaatgctg
     2581 aatttaccgg ctgaaatgct aaaagtaacc gaaggggaac gttttgccga agtgctacag
     2641 caaatccacg aatgggacga tgcgattacg ctgatttcgc atacggaaga taccattatt
     2701 gagtttgtgg gaaagctccc aagcggttca atttctcgtg gattttacaa tttcgaacat
     2761 aaagagggcg gaggcttaca agggcatcta cgctacgaaa attgtgccaa aatttatttg
     2821 ttggatcgtc cttttatggg aaaacgtact gtttcactga ttttcattaa taaaaaaggc
     2881 aacgcaatgt ttaagatttt tgtcggcaga gagaaaattg gcggggcatt aaaagagcat
     2941 caaattaagg cgctgtatca gttgattggc taatctgtaa aaagtcatcg aaaaatgacc
     3001 gcttgtaact tatagaaagg gctacgatat tgaatcgtag cccttttcaa tattagccta
     3061 ccgcttgcgg taaatagcca gcctgaatta aaaacggaat gaccataatg ataataccgg
     3121 caattaacgc aaccactaat gccaaattac caccaatcac acggtaaggt aaattcggat
     3181 attggcgacg tgctttccac gctaagccga taggtaaaat cataccatag aacgcaaaga
     3241 gtaaaccggc gtaacctaat gccttaataa agccgttcgg atagaataaa gcgaacagaa
     3301 ttggcggtgt aaaggtggcg atggtcagcc ataaacggtt agtcggtaga tttaagcgtt
     3361 ttaacaaatc gcccacgcct tcaaaaattc ccatcgaaac ccctaaaaat gaggtaatca
     3421 atgcaagcac tgagaataag cgaaccattt cgcctaaaat cgtactaccg gtaatctggc
     3481 tagtggcttt caccaagccg tttaaggtcg gatcttgtgt caaaattgtg gtgaattcat
     3541 tttggcttaa taccccgtgt gtagcgagct gccacaataa ataagccact agcggaattg
     3601 ccgtcccgat ataaatagat ttacgaattt tgccgatatc tgcgtctaaa tagctattaa
     3661 ttgttcccat aataacgtgg aaaccgaacg cagtgaagaa aatgggtata gcagaaataa
     3721 tgagtaagtt atctaatgga attgctgtca agttttccag cttcgcttta ggcagcatca
     3781 tcagcaacac ggcaataaaa gcaacaattt ttcccaaaaa cagtactcgg gttaaaccat
     3841 caaccgattt cacgccgact accacaaatg tacctaatac cgcagtgaag attaaaatgc
     3901 tgattttcag tttcatatca gcatctgcca tttcaggcat tacaccggct aacagtgaac
     3961 caccaccggt aatataagcc gcaagtaggg cataaagtag tacgagcaaa ctgaaagtgg
     4021 ctaatacacg cccgattaag ccaaagtatt gctcggcaag gcttgccact ccaacatctt
     4081 tttgcggagc ggtttgataa acttccataa ataataaacc ggtgtaggcc aataaagccc
     4141 ataatccgac taagagtaat gcggttgccc caaaacccat tcctgcagag gtgagtggca
     4201 ttgcaagcat tcctgcacca atggtagtgc ctgcaatcat taatgcactt cctaaaattt
     4261 tatttttcat aatatgtgtg agtaagagtt aaaaaagggg aacattttat cagaattttt
     4321 tcgcaatgcg atctagataa cataatttct ccgcttattt tgcacaatca gccgtgcttt
     4381 agtaaactaa gcaacaattt gcaatttttt atttaaaaca gaccgcttgt atgtctttaa
     4441 tttcacttaa tctgccgaaa tctgacggca attttcaaga tcatcaaacc ctcggtaacc
     4501 ttgtcgggca ttccgatacc cttgcgatca gccaagctgc ccgagccttt tacggcttga
     4561 cggtggttgt cacacccgac acccgcacgg cgttacgctt ggaaaaagcc ttgcctcagt
     4621 ttgcagggct gccagtgcaa ctgttccccg attgggaaac cttgccttat gacaattttt
     4681 cgccgcacca agacattatc tccgcccgac tttctgccct gtttgaactg caacaagggc
     4741 gacagcagat tttgctgttg ccgatcaaca ccttaatgca gaaggtctgc ccgccgaatt
     4801 atctcgctaa caatgtgctg ttgattaaaa aaggcgaccg tttttcgatt caaaaactgc
     4861 ggttacaact ggaaaatgcc ggctatcggg cggtggaaca ggtgttggaa tatggtgaat
     4921 acgccgtgcg tggctcgatt ttagacctat tcccgatggg agcagaagag ccgtttcgcc
     4981 tcgatttttt cgatgatgag atcgacagta tccgcacttt tgatgtggat aaccaacgca
     5041 ccaaaacgga aattgccgaa attaatttac tgccggcaca cgagttcccg actgatagca
     5101 acgggatcga gcattttaga gccaaattcc gtgaaaaatt cggtgaaatc cgccgtgagc
     5161 cggagcatat ttatcagcaa gtcagcaaag gcattttaaa tgcagggatt gagtattggc
     5221 agccgttgtt ttttgaggaa atggcaagtc tgtttgacta tttccctgcc caaacgctgt
     5281 ttatcacttt cgccgatatt cagcaaaaag ctgaacaatt tcaccaagat acccaaaacc
     5341 gctatgaaag ccaccgagtg gatccgatgc gaccgctact gccgccgagt gatctctggt
     5401 ttgcgattga tgaggtaaat cgctggctga aaggctatcc ccgtttaacg ataacttcgg
     5461 agaaaatccg taaatcagca gcgaaaatga atgcaaatgt ggctaacttg ccggatattg
     5521 ctattcaatc ctctgccaaa gagccgtttt ctgctttcca gcaattccgc caaaaatttg
     5581 acggcaacat tctgttttcg gtggagagcg aagggcgaag agaaaccttg ctggatttgc
     5641 ttgctccgct tggggtgaag ccgaagcagg tcaattcatt agatgaagca caaggtttgc
     5701 cattttccct gattatttca ccgcttgatc aagggtttgt ggtggaaacg ggcgggcacg
     5761 ggacccgtcc ctacgatgat gaattaaata caaatggcga aaatgataat aactacgtag
     5821 gggcgggtcc tgtgcccgcc cgcaaccttg ccatcatctg cgaaaccgac ctgctgggcg
     5881 aacgtgtgca aacacggcgt gagaaaaacc gcaaagccgt caatcctgat accttaatcc
     5941 gtaatttagc agaactcaaa atcggacagg cggtggtgca tttggaaaac ggcgtggggc
     6001 gttacggtgg cttaaccgtg ctggacgctg gtgggatcaa agccgaatat ctcgtgctac
     6061 attatgctaa cgatgccaaa ctctatgtgc cggttgcctc gctccattta atcagccgtt
     6121 atatcggtgg ggcggatgaa actgcgccgc tacataaatt aggcagtgaa gcgtgggcga
     6181 aaacccgcca aaaagcagcg gaaaaaatcc gtgatgtggc ggcagaattg cttgatgttt
     6241 atgccaaacg agaaagccaa accggttttg cgtttgccta cgataaagcg gaatttgatc
     6301 agtttagtgc cactttccct tatgaggaaa cggacgatca gaaaattgcc atcaatgccg
     6361 taattagcga tatgtgccaa gccaaagcga tggatagatt ggtgtgtggc gatgtcggct
     6421 tcggcaaaac cgaagtggcc attcgagcga ctttcttggc agtgatgaac cataaacagg
     6481 tggttattct tgccccaact accttgctcg cccaacagca ttatgagaat ttcaaagacc
     6541 gtttcgccaa ttaccctgtg aatgtggaag tgctgtctcg ctttaaaacc gccaaagagc
     6601 agaaaacgat tttgcaaaat gtggcggagg gcaaagtgga tattttggtc ggcacgcaca
     6661 aactgttgca agacgatgta gcgttccgtg atcttgggct tttagtgatt gatgaagaac
     6721 accgtttcgg cgtacgccaa aaagagaaaa tcaaacaact gcgtgccaat gtggatattc
     6781 tgaccctcac cgccacgcca attccaagaa cgctgaatat ggcactcaac ggaatgcgtg
     6841 atctctcgat tatcgccagc ccgccggctc gccgactttt aatcaaaacc tttgtgcgac
     6901 aaagtgatga aatggtaatc cgtgaggcaa ttttgcgtga aattctgcgt ggtgggcagg
     6961 tttactacct ccataacgat gtggcaacca ttgaaaattg tgccgagaaa ttggctgaac
     7021 tcgtgccaga ggcaagaatt gtgatcggac acgggcagat gcgtgagcgt gaattggagc
     7081 gggtgatgag cgatttctat catcaacgct ttaacctgct ggtttgctcc accattattg
     7141 aaacggggat tgacgtgccg actgccaata ccattattat cgaacgggcg gacaaattcg
     7201 ggctggcaca actgcaccaa ctgcgtggac gggtcggacg ctcgcaccac caagcctacg
     7261 cctatatgct cacaccgcac ccgaaaacgc tcaccaaaga tgccgagcaa cgcttggagg
     7321 cgatgagtac cattgataat ctcggggccg gttttgcgtt ggcgacccac gatttagaaa
     7381 ttcgtggtgc aggcgaattg ctcggttcgg agcagagcgg acagattgaa agcatcggtt
     7441 tttcgctcta tatggacttg ctcgaaaatg cggtcaaagc tttgcaagaa gggcgagaac
     7501 cgagcctcga tgaaatcacc caacaccaag cggagattga attgcgtgta ccggccttat
     7561 tgccggacga ttatctgcct gacgtgaata tgcgtctgtc gttctacaag cggatcgcaa
     7621 gctcggaaaa tctgcaaagc ctgaacgact tgaaagtgga gctgatcgat cgcttcggct
     7681 tgctcccaga ggcaaccaaa aacctgtttg cgataaccca acttcgcttg tcggcacaaa
     7741 cgctcgggat taagaaaatc gatgccggca ttcacggcgg ttatcttgaa tttaaaccga
     7801 cagcccagcc cgacccaatg aagtttatcg ccttaatcca aaaacaacca gcggtgtaca
     7861 gttttgaagg ggcggtgaag ttcaaattcc gcttagcact cgaagacaac cgcaagcggt
     7921 tagaatttgt ggaaaatttg ctaagggagg ttgtgggcgg ataaagcctc ctaaggttgt
     7981 caatcttgaa aaacgatttt tgcgatctgt atcgtaaaaa tcgtttttgt ttattgcgaa
     8041 tccagtaatt tcatctaggc tgtttataac ttaaaaaaat agatgtaaat atattttatt
     8101 tacaattaaa aaggagtaaa ctggcaatgg aagaaattaa tggttttgaa tgggatagtg
     8161 agaaagctct tcgtaatcaa caaaaacacg gagttagttt tatcgaggcg gtaagcgtat
     8221 tttatgataa taatgcgatg ttaatcccgg atccagatca ctcatctagg gaagagcgtt
     8281 ttttgctact cgggcgtagc aataaagata atctacttgt ggttgtgcat tgcgagagaa
     8341 ataccaacat tcggattatt tcagcacgtt tggcaacaaa acgcgaaagt gggcaatata
     8401 aaggagtaca ttaaatgaga gatgaatacg atttttctaa tgcagtgaaa aacccttacg
     8461 caaaagggct aaaaagcaaa agtgtggtta ctattcggat tgaagacgat gttatcagct
     8521 attttaaaca acttgccgaa gaggtgaatt tgccttacca aacgttgatc aatctttatt
     8581 tgaaagattg cgttgagcag aaacgtaaac cgactattag ttggtaatat tatgatttga
     8641 aatcagtatg ttattgagta tttgagaatg ggttatcttg ccagttgtat aaaataggca
     8701 tatactttgg catatacact atctatcgga gggtaaagta agatggaaaa aattgcgaga
     8761 ttattccgta acgggcggaa ccaagcagtg cgtttaccgg ttgaatttga gtttgatgca
     8821 gagcaagtct atgtttctaa aaaagaaaat ggcgatattt tattatcatt gagatcgaga
     8881 aataccgagc attggcaacg attgtttgag ctattgcctg ctgttgtatg tgatgaaaca
     8941 tttttagata caaaagagag aaaccaatcc tttgagcaac gggatccttt tgaggtagct
     9001 taaatgtata tgttagatac gaatactgta agctattttt ttcgtggaaa tgcaaatgtg
     9061 gtggcgaaat tgaagtccat taatcctgag aggctttgta tttcatctgt aactgctgct
     9121 gaattggttt atggtgtggc gaaaagaaat aatgggcagc tttctcaatt tttagattat
     9181 tttttatcga gtgtaaaggt tttagattgg aattatcgtt gtgctgaact ttatggaaag
     9241 ttacgggcag agatggagaa aaatggcaaa gtaatgggcg tgcaggatca aatgattgct
     9301 agtcacgctc ttgctgaaga gtgtatttta gtttctagtg atcaggcatt taaaatggta
     9361 cctgatctga aattggagaa ttggttacac taaactatag taaggaaaaa caatgaaaca
     9421 atcccttctt aaccgtttac tacgttacac ccaaattcac acaacttcag atccgaaaag
     9481 ccaaactgtg ccaagctcgc aacagcagtg ggatttgctt catctgctga aaacggaagt
     9541 agaggcgatg gggctaagcg agatttatct tgaccccaac ggctatctgt tcgccagctt
     9601 gcctgccaat attgacaaaa ccctgccggt gcttgggctg attgcccacg ttgatacttc
     9661 gcccgatttt aatggtgaaa acgtgaaacc acaggtgatt gaggcttatc aaggcggcaa
     9721 tattttgcta aacggcagtg gcgattatct ttcgccaacg gatttcccga atttaaacaa
     9781 gctgattggc gacaccttag tcaccactga cggcacctct ttgcttggcg cagacgacaa
     9841 atccggcatt gcgattattc tctcggctat cgagtattta caagccaatc cgcatattcc
     9901 gcacggcaag atccgcatcg gctttaccac cgatgaagag atcggtcgag gcgcagatca
     9961 ttttgatgta aacgcattcg gtgccgatgt cgcctttacc tttgatggcg ggcctctggg
    10021 cgaattgcaa tatgaaaatt tcaatgccga tgcagcgacc gttacgttct tcgggcgtag
    10081 cgttcacccc ggcacggcaa agggcaagat gatcaacgcc ttagagcgag cttgcgagtt
    10141 ccaacaccgt ctgcctcccc atttaacccc tgccaccagc gaagggcgtg aaggctttat
    10201 tatgttgcac ggcattgagg gtggaattga taaagcggaa attcactata ttttacgtag
    10261 ctttgagcgt gatgaattag ctgcattcgg caaaatgctg aatgatacgc tggcagagat
    10321 gcaacagatt tacggcgaac attgcggaaa agtcgagatt gtcgagcaat atcgcaatat
    10381 gcgtgaagtg ctggacgatt acggctactt ggttgaaatt gccgaaaacg caatgcgtga
    10441 acaaggcatt gagccgaatt tagaaccgat ccgtggcggt actgatggct cacgcctttc
    10501 atttatgggc ttgccttgcc cgaatttatt taccggcggc gaaaatttcc acggacgatt
    10561 tgagtttatt tcggttgata cgatggaaaa agccacaaaa gttgtaattg atatttgtcg
    10621 gaaatttgct gattatgatt tcaacaaata aggcggctgc aagcggtcaa atttgatgaa
    10681 aaatttgcaa aaagcgttat ttttcaccaa ttaaacgatt ttttacagat ttcctacaaa
    10741 tttatttgac attaaatctg aaatccatag aatatgcacc tgttgagact ctacgaggtt
    10801 cgtagcgttt ttaa
//
LOCUS       DANLVT010000083        10466 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.083, whole genome shotgun sequence.
ACCESSION   DANLVT010000083 DANLVT010000000
VERSION     DANLVT010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10466)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10466)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10466
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.083"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            37..1545
                     /locus_tag="PXC99_001790"
     CDS             37..1545
                     /locus_tag="PXC99_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HDL5418224.1"
                     /translation="MSKCPVTHLTMNNGAPVVDNQNSLTAGPRGPLLAQDLWLNEKLA
                     NFVREVIPERRMHAKGSGAFGTFTVTNDITKYTRAAIFSQVGKKTEMFARFTTVAGER
                     GAADAERDIRGFALKFYTEEGNWDMVGNNTPVFFLRDPRKFPDLNKAVKRDPRTNMRS
                     ATNNWDFWTLLPEAFHQVTIVMSERGIPASYRHMHGYGSHTYSFINAANERFWVKFHF
                     HTQQGIKNLTNEEAAAIIANDRESHQRDLYEAIERGDFPKWKMFVQIMPETDADKVPY
                     HPFDLTKVWPKSDYPLIEVGEFELNRNPENFFADVEQSAFAPSNLVPGISVSPDRMLQ
                     ARLFNYADAQRYRLGVNHHQIPVNAPRCPVHSNARDGQGRVDGNYGSTIHYEPNSFGK
                     WQEQAQYAEPPLKINGDAAHWNYREDDADYFSQPRVLFNMMNDEQKQALFNNTAAGMG
                     DALDFIKYRHIRNCYACDPAYGEGVAKALGMTVEDAIAARATDPALGQPGLL"
     gene            complement(1610..1831)
                     /locus_tag="PXC99_001791"
     CDS             complement(1610..1831)
                     /locus_tag="PXC99_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HDL5418225.1"
                     /translation="MNVRLPASGLVCPFPLVEAKAAMAKLNKGDSLTIEFDCTQATEA
                     IPNWAEEEGYEVTDYQQLGDALWEITVVK"
     gene            complement(1860..2369)
                     /locus_tag="PXC99_001792"
     CDS             complement(1860..2369)
                     /locus_tag="PXC99_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeeE/YedE family protein"
                     /protein_id="HDL5418226.1"
                     /translation="MLFTGLLCGFLLGFVMQRGRFCITGAFRDLYVTKNSRMFVALLI
                     AITVQSIGIWLLYEAGSFSSPAEDLPLLAVIIGAFLFGIGIIYAGGCATGTWYRAGEG
                     LIGSWVALVIYGLFSASMRTGVLAPLNQELKSNVIQHRTIYETFGISPWVLVFILSVI
                     TLALSAHSI"
     gene            complement(2476..3810)
                     /locus_tag="PXC99_001793"
     CDS             complement(2476..3810)
                     /locus_tag="PXC99_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HDL5418227.1"
                     /translation="MQLYSYICLLFGLAMFISFFTRKLNENIQTTIAITASALVGSLL
                     ILTFGSLGWFNVDKLAISIFEQLDFKSFLLNGMLGFLLFAGSLGIKLPLMKEQRREIA
                     VYALFSTLVSTFLIGALIYGVARLLGLELGFVYCLLFGSLISPTDPIAVLAIIKSLKA
                     PKRLSMHVEGESLFNDGIGLVIFTTIFAVAFGGQEPNLSGITGLFLQEAVGGIVFGLL
                     TGFVAHKFISATDDGSLEILITLTIPTVGFVIANYLHVSGALTMVVAGIMIGNWTRRS
                     GFSEQSQKYLDHFWEMIDHSLNYLLFLLIGLSTLLVDFTFIGEVLMLAAIPICLLARY
                     ISLWIPYQVLKRFRTYNPYTLKIMTWGGLRGGLALAMALSVPAGAAVVSSSEGNLDVR
                     DLILLMTYAVVTFSILVQGSTVEPMIKKSKLVDPRKVALNKLGAPDDVIPHI"
     gene            complement(3921..5069)
                     /gene="dapE"
                     /locus_tag="PXC99_001794"
     CDS             complement(3921..5069)
                     /gene="dapE"
                     /locus_tag="PXC99_001794"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HDL5418228.1"
                     /translation="MKNEIISLAQNLIRRDSISPQDKGCQQEIAQRLEKLGFNIEWLP
                     FGDTLNLWATHGSENGKTEPCIVFAGHTDVVPVGDESQWAYPPFSAEIVDGMLYGRGA
                     ADMKGSLSALVVAAETFVQHHPNHKGKVALLITSDEEAAAKDGTVKVVETLMARNEAV
                     HYAVVGEPSSSKVFGDVIKNGRRGSITADLYIEGIQGHVAYPHLAENPVHTSLGFLTE
                     LTTYQWDNGNEFFPPTSLQIANIKAGTGSNNVIPGELYVQFNLRYCTEVTDEIIKAKV
                     AEMLEKHGLKYRISWNLSGKPFLAGNGKLVEAALQAVENVTKITPRLDTGGGTSDGRF
                     IALMGAEVVEFGPLNATIHKVNECVSADDLAHCGEIYYQILEKLLATA"
     gene            complement(5199..5546)
                     /locus_tag="PXC99_001795"
     CDS             complement(5199..5546)
                     /locus_tag="PXC99_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family reductase"
                     /protein_id="HDL5418229.1"
                     /translation="MTTLVYGIKNCDTVKKALKWLEDHNQNPQLHDYRVDGLNADWLV
                     EMEAKFGWENLVNKRSTTWRNLDEEIKNNLNRESALKVLTEQPTLIKRPIVIKEDIAL
                     IGFNEKEYVAAFN"
     gene            complement(5546..6403)
                     /gene="folP"
                     /locus_tag="PXC99_001796"
     CDS             complement(5546..6403)
                     /gene="folP"
                     /locus_tag="PXC99_001796"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HDL5418230.1"
                     /translation="MQIHFKNFQKNDRLLDLTTPQIMGILNFTPDSFSDSGKFFSLDK
                     ALFQAEKMLADGASIIDIGGESTRPNAAIVSLEQELERVVPVVEAIRSRFDCLISVDS
                     SKAEVFKESAKVGMDIINDIRALTEPNALAAAVELGLPVCLMHMQGNPQTMQQNPHYD
                     DVLEDVADFLNQRIFECITAGIPKEHIILDPGFGFGKSVKHNYQLLKHLKAFVDSGFP
                     VLAGLSRKSMIGAVLDKPVEQRLLGSVVGALLAAQNGAKILRVHDVAETADALKIWQA
                     MLESDNEEK"
     gene            6392..6529
                     /locus_tag="PXC99_001797"
     CDS             6392..6529
                     /locus_tag="PXC99_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418231.1"
                     /translation="MDLHIFAYILLVQASTLVPLYVDLQHKRGRLRYLTLSLSYLVIS
                     P"
     gene            complement(6512..7474)
                     /gene="rluC"
                     /locus_tag="PXC99_001798"
     CDS             complement(6512..7474)
                     /gene="rluC"
                     /locus_tag="PXC99_001798"
                     /EC_number="5.4.99.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(955/2504/2580) synthase
                     RluC"
                     /protein_id="HDL5418232.1"
                     /translation="MTTEKVISAGVQFFTISEDEAGQRLDNFLLAKLKGVPKSLIYRI
                     VRKGEVRVNKGRNKPEYKLQPDDLVRVPPVRVAEKNEAPISTKLNKVAELESQILYED
                     ESMLVINKPSGIAVHGGSGLSFGVIEALRALRPQARFLELVHRIDRDTSGILLVAKKR
                     SALRSLHEQLREKVVQKDYLALVRGQWQAHTKVIKAPLLKNELASGERIVRVSEEGKP
                     SETRFSIEERYANATLVKASPITGRTHQIRVHTQYAGHPIALDDKYGDAEFDSKMKEV
                     GLQRLFLHAHAIRFEHPKTGEEMVITAPLDKTLKGVLAKLRANY"
     gene            7583..8485
                     /locus_tag="PXC99_001799"
     CDS             7583..8485
                     /locus_tag="PXC99_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HDL5418233.1"
                     /translation="MTEKVTETAPNIDVVAETEKVIHKVSNMNIETMLNEWIIPYGTK
                     ILLAIAIFVVGKFLARLISRLLGKAALKSTKDEMLQSFIVSISYFLLLLIVVIASLSQ
                     IGINTSSLVALIGAAGLAIGLSLQNSLQNFAAGVMLLIFKPFRKGDLIETGGMTGVVE
                     QMGLLVLELRTGDNKTVLLPNGKVFSDSIINYSNNPTRRIDFTFDISYESNLKEAKEI
                     IQRILDANTYVLKDPAPVVAVGALAPHSVQLVVRPWVQTPNYWAAYWEIIEQVKLAFG
                     EAGISIPYNQMELHIKSGSLENKA"
     gene            8583..9080
                     /gene="rraA"
                     /locus_tag="PXC99_001800"
     CDS             8583..9080
                     /gene="rraA"
                     /locus_tag="PXC99_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E activity regulator RraA"
                     /protein_id="HDL5418234.1"
                     /translation="MRIDTSALCDLYSDQVDVVEPIFSSFGGASSFFGKITTVKCFES
                     NGLIAEVLEEEGEGRVLLVDGGGAVRRALIDAELAQLAVDNGWEGIIVYGAVRQLDIL
                     ERLDIGIHALAPIPVGADNTDIGEVDTPVNFGGVTFFPEDYVYADLTGIILSQELLDL
                     NDISE"
     gene            complement(9128..10456)
                     /locus_tag="PXC99_001801"
     CDS             complement(9128..10456)
                     /locus_tag="PXC99_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HDL5418235.1"
                     /translation="MFAFTLVLSACSLVVYKPVETIKQVNVERGYRQKNVIAESAKDG
                     NIVVIMFSGGGTRAAALGYGVLEEFKKVRVKETNKGNTLLENIDIAFGVSGGSILATY
                     FALEGKDIIPKFADRFLKANFQKDIITEVFSLSNLPRLSSPQYGRGDLLQERLNFALY
                     HGKKFGDLVKNRKGPFAVISATDMNIGQKLTFTQETFDGLCLNLNDLEISRAVAASSS
                     VPLIFAPLTLNNNGGNCHFSMPQEFSAREKAIDGLITKNIEETNHILSLYQDSKERPF
                     IHLVDGGLTDNLGLASVLEISDVMGIEEMYQYIHQLRVKNIVVINVNAQNEVSSEIDK
                     TANVPGVADVVNTIVNVPIDRTTQINLQRYRQFTDGWNEYANKQPSKIEMHFVSLGLK
                     ELPDGDLKKDVLNIATSFYLPEEDVDKLREAARVLLQQSQEYNAALKTLQ"
BASE COUNT         3058 a         2350 c         2042 g         3016 t
ORIGIN      
        1 ttacctatct tatttctaat ttatgaggat tctattatgt ctaaatgtcc tgttacacat
       61 ttgacaatga acaacggtgc acctgttgtt gataaccaaa acagcttaac agcgggtcca
      121 cgtggtccat tattagcgca agatttatgg ttaaatgaaa aattagcgaa cttcgtgcgt
      181 gaagtcattc ctgagcgtcg tatgcacgct aaaggttccg gtgcgttcgg tactttcact
      241 gtaactaacg acatcactaa atacactcgt gcggcaattt ttagccaagt cggtaaaaaa
      301 actgaaatgt ttgctcgttt caccaccgtt gcaggtgaac gtggtgcggc agatgctgag
      361 cgtgatattc gtggtttcgc attaaaattc tataccgaag aaggtaactg ggatatggtg
      421 ggtaacaaca cccctgtgtt cttcttacgt gacccacgta aattcccgga tttaaacaaa
      481 gcggttaaac gtgacccacg cacgaatatg cgttctgcaa ctaacaactg ggatttctgg
      541 acattattac cagaagcatt tcaccaagtg actattgtaa tgagtgaacg tggtattccg
      601 gcttcatatc gtcatatgca cggttatggc tcacatactt atagcttcat caatgcagct
      661 aatgagcgtt tctgggtgaa attccatttc catacacaac aaggcattaa aaacttaact
      721 aacgaagaag cagccgctat tatcgctaac gatcgtgaaa gtcaccaacg tgatttatac
      781 gaagcgattg agcgtggcga tttcccgaaa tggaaaatgt ttgttcaaat tatgcctgaa
      841 actgatgcag acaaagtacc ataccacccg ttcgatttaa ctaaggtatg gccgaaatca
      901 gactatccgt taattgaagt gggtgagttt gaattaaatc gtaaccctga aaacttcttt
      961 gctgatgtgg aacaatctgc attcgcacca agtaacttag tgccgggcat cagcgtgtct
     1021 ccagaccgta tgttacaagc tcgtttattc aactatgcgg atgctcaacg ctaccgttta
     1081 ggtgtgaacc accaccaaat ccctgtaaac gctccacgtt gcccggttca tagcaacgct
     1141 cgtgacggtc aaggtcgtgt ggacggtaac tacggtagta ccattcacta cgaaccaaac
     1201 agcttcggca aatggcaaga acaagctcaa tatgcagagc caccactgaa aattaatggt
     1261 gatgcagccc actggaacta tcgtgaagac gatgctgact acttcagcca accacgtgta
     1321 ttgttcaata tgatgaatga tgaacaaaaa caagcattat tcaataatac tgctgcaggt
     1381 atgggcgatg cattagactt cattaaatac cgtcatattc gtaactgcta tgcctgtgat
     1441 ccggcatatg gtgaaggtgt ggcaaaagca ttaggtatga cggttgaaga tgctattgct
     1501 gcaagagcaa cagacccagc attaggtcaa ccgggtttac tctaatcctt agtaaataca
     1561 aaactcaaag caaaagctct acaaaaaagt agagcttttt tattgctaat tacttaacca
     1621 ccgtaatttc ccacaaggca tcaccaagtt gttggtaatc ggtaacttca tagccttcct
     1681 cttccgccca atttggaatg gcttcggttg cttgagtaca gtcaaattca atcgttaagc
     1741 tatcgccttt attcaatttt gccatcgccg ctttggcttc gactaatgga aacgggcaaa
     1801 caagccctga ggcaggtaaa cgtacgttca tctttattac tccttaaaaa attaaccttt
     1861 taaatgctgt gggcggataa tgccaatgta attacactca ggataaacac taacacccaa
     1921 ggggaaatac caaatgtttc ataaatcgtg cggtgttgaa ttacattgct ttttagctct
     1981 tgattaagtg gggctaacac accggttcgc atagaagcag aaaacagccc ataaataacc
     2041 agtgcaaccc aactgccgat taaaccctca ccggcacgat accacgttcc tgtagcacaa
     2101 ccgcctgcat aaataatgcc gataccaaac agaaatgccc caatgatcac tgcgagcaaa
     2161 ggcaaatctt ccgccggaga actaaaagag ccggcttcat acaaaagcca aatcccgatc
     2221 gattgcaccg taattgcaat taaaagtgcc acaaacatac ggctattctt tgttacatag
     2281 agatcacgaa atgctccggt aatacaaaaa cgccctcttt gcatcacaaa cccgagtaga
     2341 aagccacata ataatcctgt gaataacata aaaaatacct ctcaacaaat taacgtgaga
     2401 ggtatttaaa tataaagccg tctagatggc taataatctt tagcaaaatg atatgttatt
     2461 cagttataaa tgctattaaa tatgtggaat tacatcatca ggtgcaccta atttattgag
     2521 tgccactttt cttggatcta ccaacttgga tttttttatc atcggttcaa ccgttgaacc
     2581 ttgtactaaa atcgagaaag tgactaccgc ataagtcatt aacaaaatca aatcacgtac
     2641 atcaagattg ccttctgagc tcgataccac cgcagcccct gccggtacgg aaagtgccat
     2701 cgcaagggct aatccaccac gtaaaccgcc ccaagtcata atttttaagg tgtacgggtt
     2761 ataagtacgg aaacgtttta acacttggta tggaatccac aggctgatat agcgtgcaag
     2821 caaacaaatt ggaattgctg ccaacattaa cacctcacca ataaaggtga aatcaactaa
     2881 cagtgtactt aagccgataa gcaggaataa caggtagttt aatgaatggt cgatcatctc
     2941 ccagaagtga tcaagatatt tttggctctg ttcggagaaa ccggaacggc gagtccagtt
     3001 gccaatcata ataccggcaa ctaccattgt taatgcccct gaaacgtgta ggtagtttgc
     3061 aatcacaaag ccgactgttg gaatcgttag cgtaattaaa atttcaaggc ttccgtcatc
     3121 ggttgcggaa ataaatttat gtgccacaaa accggttaat aagccaaaaa cgataccgcc
     3181 taccgcttct tgcaagaaca gtccggtaat accgctaagg tttggttctt gtccgccaaa
     3241 agcaacggca aagatagtgg taaaaatcac caagccgata ccgtcattaa acagagattc
     3301 gccctccacg tgcatcgaaa ggcgttttgg ggctttcagg cttttgataa ttgccaatac
     3361 ggcaatcggg tcggttggcg aaatcagtga gccaaacagc aaacaataca caaagccgag
     3421 ctctaaccca agtagccttg ccacgccata aattaacgca ccgatcaaga aagtagaaac
     3481 taaggttgaa aataaggcat aaactgcaat ttcccgccgt tgctctttca ttaatggtag
     3541 tttaatccca agtgaaccgg caaaaagcaa gaaccccagc attccgttta acaggaagct
     3601 tttaaaatcg agttgttcaa aaatggaaat ggcaagttta tcaacattaa accagccgag
     3661 agaaccgaag gtaagaataa gaagggagcc gacaagggca gaggctgtaa ttgcaatagt
     3721 ggtttgaata ttttcgttta attttcgggt aaaaaacgaa ataaacatcg caagcccaaa
     3781 cagcaagcag atataagagt agagttgcat aacatttacc tataaatata aaaactgccg
     3841 ctagtgtaaa cgctgtttaa cagaatagct acataaaaaa taggcagaat acaatttgat
     3901 aacattctgc ctatttaggg ttatgcagtt gccaataatt tttctaaaat ttgataataa
     3961 atttcgccac aatgtgccaa atcatccgca ctcacacact cattcacttt gtgaatagtg
     4021 gcgttcagtg gtccaaattc cactacctct gcccccatta atgcaataaa acgaccgtcc
     4081 gaagtaccgc cacctgtgtc taaacgaggc gtaatttttg tgacattttc gaccgcttgt
     4141 aaggcggctt cgaccaattt tccattgccg gcaaggaatg gtttgcctga taaattccaa
     4201 cttattcggt atttcaaacc gtgtttttcg agcatttccg ctactttggc tttgatgatt
     4261 tcatcggtca cttcagtgca ataacgtaag ttaaactgca cataaagctc gcccggaatc
     4321 acattattac tgcctgtgcc ggctttgata ttggcaattt gcaaactggt aggcgggaaa
     4381 aattcgttac cgttatccca ctgataagtg gtcagctcgg ttaaaaaacc cagtgacgta
     4441 tgcaccggat tttccgccaa atgtggatag gcaacgtgcc cttgaatgcc ctcgatatag
     4501 agatctgccg taattgaacc acgtctgccg tttttaatca catcgccaaa caccttgcta
     4561 ctagacggtt cgcccactac cgcataatgt accgcttcat tgcgagccat taaggtttca
     4621 accactttta ccgtaccgtc tttggctgct gcctcttcat cggaggtaat caataatgcc
     4681 actttgccct tatggtttgg gtgatgttgc acgaaagttt ctgccgccac aactaacgcc
     4741 gagagcgagc ctttcatatc tgccgcccct cgcccataaa gcattccatc tacaatctca
     4801 gccgaaaacg gcggataagc ccattggctt tcatcgccta ccggcaccac atctgtatgc
     4861 ccggcaaaca caatgcaagg ctctgtttta ccattttccg agccgtgcgt tgcccataaa
     4921 ttcaaggtgt cgccaaacgg caaccattca atattaaagc ccagtttttc aagacgttgt
     4981 gcaatttctt gctgacagcc tttgtcttgt gggctgatgg aatcacggcg gattaggttc
     5041 tgtgcaaggg aaataatttc atttttcata ggttacaagc ggttgttttg ggtgaatttt
     5101 ttgctatata tcctgtaggg gcgggtcctg tgcccgcccg aacaatccta aagactacgg
     5161 acaggcacag gacctgtccc tacaagcagg ggaaaaaatt aattaaacgc agccacatac
     5221 tctttctcat taaaaccaat caaagcaata tcctctttaa tcacaatcgg gcgtttaatt
     5281 agggtcggct gttcggttag cacttttaat gccgactcac ggttaaggtt gtttttaatt
     5341 tcctcatcaa ggtttcgcca agtggtgcta cgtttattaa ctaagttttc ccaaccgaat
     5401 tttgcttcca tttccactaa ccaatcggca tttaaaccgt ccacacggta atcgtgcagt
     5461 tgtgggtttt gattatgatc ttcgagccat ttcaaggctt tttttactgt gtcgcaattt
     5521 ttaatgccat aaactaaggt tgtcatcatt tttcctcatt atctgattcc agcattgcct
     5581 gccagatttt taacgcatcg gcggtttctg ccacatcgtg cacccgtaaa attttcgccc
     5641 cattttgagc ggctaataac gcccctacta cagagccaag tagccgttgt tctaccggtt
     5701 tatctaacac cgcaccaatc attgatttac gggaaagtcc ggcaagcaca gggaagcctg
     5761 aatccacaaa ggctttaagg tgtttcaata attggtaatt gtgtttcacg cttttaccaa
     5821 agccaaaacc ggggtctaaa ataatgtgtt ctttgggaat gcctgcggtg atgcactcga
     5881 aaatccgttg atttaagaaa tctgccacat cttccaacac atcatcatag tgcggatttt
     5941 gttgcattgt ttgcgggttg ccttgcatat gcattaaaca aaccggcaag cccaattcta
     6001 ctgccgctgc caacgcattc ggctcggtta aggctcgaat atcgttaatg atatccatac
     6061 cgacttttgc cgactctttg aatacttctg ctttggagct atcaaccgaa atcaagcaat
     6121 caaaacggct gcggatcgcc tccaccaccg gcacaacacg ctctaattct tgttctaagc
     6181 tcacaatcgc cgcattaggg cgggtggatt caccgccaat atcaataatg cttgccccat
     6241 cagctaacat tttttccgct tggaacaagg ctttatcgag ggaaaaaaac ttgcccgaat
     6301 cggaaaatga atccggcgtg aagtttaaga tccccataat ttgcggtgtg gttaaatcta
     6361 acaagcggtc atttttttga aaatttttga aatggatttg catatttttg cttatatttt
     6421 gttggtgcaa gcgtccacgc ttgtaccact ctatgttgat ttacagcaca agcgtggacg
     6481 cttgcgctat cttactctct cattaagtta tttagtaatt agcccttaat tttgccaata
     6541 cgccttttaa agttttatcc agcggggcgg taatgaccat ttcttcgccg gttttggggt
     6601 gttcaaaacg aatagcatgg gcgtgcagaa ataaacgctg taagcccact tctttcattt
     6661 tgctgtcaaa ttccgcatca ccatatttgt catctaacgc aatcgggtgt ccggcatatt
     6721 gggtatgcac acggatttgg tgggttcttc cggtaatagg cgaagctttc accaaagtgg
     6781 cattggcata acgctcttca atgctgaaac gggtttcgga cggtttaccc tcttcactca
     6841 cccgtacaat tcgctcaccg ctggcaagtt cgttttttag caatggagct ttaatcactt
     6901 tggtatgagc ctgccattgc cctcgcacaa gggcaagata gtctttttgt actacttttt
     6961 cacgcagttg ttcgtgcaag gaacgtaacg ccgaacgctt tttcgccacc agcaaaatgc
     7021 ctgatgtatc acggtctata cggtgtacca attccaagaa acgagcctgt ggacgtaatg
     7081 cacgcaaggc ttcgatcaca ccaaaactta aaccactgcc accgtgtact gcaatgcctg
     7141 aaggtttgtt aattactagc attgactcat cttcatacag aatttggctc tccagctccg
     7201 ccactttgtt taatttagtc gaaattgggg cttcattttt ttccgccaca cgcaccggcg
     7261 gcacacgcac taaatcatca ggctgtaatt tatattcggg tttgtttcgt cctttattca
     7321 cccgcacctc gccttttcgc acaatgcggt aaatcaaact tttcggcacg cctttgagct
     7381 ttgccaataa aaaattatct aaacgctgtc cggcttcatc ttcactgatc gtaaaaaatt
     7441 gaacgccggc actaattact ttttctgttg tcattatctt gtcttttaga gaaaattttg
     7501 ctctaaattc tagcacaaaa ccgcttagcg agtgaggcaa attcgctagg cttatttttc
     7561 attttaattt taaggaaaca atatgactga aaaagtcacc gaaacagctc caaacattga
     7621 cgtggttgcc gaaaccgaaa aagtaatcca caaagtcagt aatatgaata ttgaaactat
     7681 gctaaatgag tggattatcc cttatggcac caaaatttta ctggcgattg cgatttttgt
     7741 agtcgggaaa tttcttgccc gcctaattag ccgtttactc ggtaaagccg cattaaaatc
     7801 aaccaaagat gaaatgctgc aaagttttat tgtctcaatc agctattttt tactgctgtt
     7861 aattgtggtg attgcctcgc tttcacaaat cggcattaac accagctcgc tggtcgcatt
     7921 aatcggtgct gccggtttag ccatcggttt atcattacaa aactcattac aaaactttgc
     7981 tgccggcgtg atgttgttaa tcttcaagcc atttcgcaaa ggggatttaa tcgaaaccgg
     8041 cggaatgacc ggcgtggttg aacaaatggg gcttttagtg ttggaacttc gcaccggcga
     8101 taacaaaacc gtgttattac caaacggcaa agtgttttct gacagcatca tcaactactc
     8161 taacaacccg acacgccgta ttgatttcac ctttgatatt tcttatgaat ctaacttaaa
     8221 agaggcgaaa gagattatcc aacgcatttt agacgccaat acttatgtat taaaagatcc
     8281 ggcacctgta gtagcagtcg gcgctttagc accgcatagt gttcaacttg ttgttcgccc
     8341 ttgggttcag acaccaaatt actgggcagc atattgggaa attatcgaac aagtaaaatt
     8401 agcctttggt gaagcaggta tatctattcc ttacaaccaa atggaattgc atattaaaag
     8461 cggttcacta gaaaataaag cataagaaaa aagcctgtaa gcggtctttt ttcgataaaa
     8521 ttttgcaaat tttgggcgaa ggtttatact ttagctaaat aatctacgaa caggagcata
     8581 ttatgcgtat tgatacctct gcactttgcg atctttattc tgaccaagtt gatgtggttg
     8641 aaccaatttt ctcaagcttt ggcggtgctt cttccttctt tgggaagatt accacggtta
     8701 aatgctttga aagcaacggt ttaattgctg aagttttgga agaagagggt gaagggcgag
     8761 tgctgttagt cgatggtggc ggtgcggttc gtcgtgcctt aattgacgca gagctggctc
     8821 aacttgctgt agataacggc tgggaaggta tcatcgttta tggtgcggtt cgccaattag
     8881 atattttgga aagattagat atcggtattc atgctttagc gccaattcca gtgggagcag
     8941 ataataccga cattggcgaa gtggatacgc ctgtgaattt tggcggtgta accttcttcc
     9001 ccgaagatta cgtttatgct gacttaaccg gcattattct ttcgcaagag ttgttggatt
     9061 taaacgacat cagcgaataa atatttgcaa aaaaatacca aaaaccgacc gcttggtcgg
     9121 ttttttacta ctgcagtgtt tttaatgccg cattatattc ttgagattgc tgcaataaaa
     9181 cccgagcagc ttcacgtaat ttatctacat cctcttccgg caaataaaat gatgttgcaa
     9241 tatttagcac atcttttttt aaatcaccat caggtaattc ttttaaacct aaactgacaa
     9301 aatgcatttc gatctttgat ggctgtttat ttgcatattc attccaacca tctgtaaact
     9361 ggcgataacg ttgtaaatta atttgtgtcg ttctatcaat tggcacatta actattgtat
     9421 tcactacatc agccaccccc ggtacatttg cggtcttatc gatctcgcta gatacttcat
     9481 tttgcgcatt tacattaatc actacaatat ttttcaccct aagctgatga atatactggt
     9541 acatctcttc aatacccata acatcagata tttccagcac actggcaagc cctaaattat
     9601 ctgttaatcc accatcaact aaatggataa aggggcgttc tttactatct tgataaaggc
     9661 tgagtatatg attcgtttct tcaatatttt ttgtaattag tccatcaatt gctttttctc
     9721 tagcactaaa ttcttgtggc atactaaaat ggcaatttcc accattgtta ttcagtgtaa
     9781 gcggcgcaaa aatcagagga acagaactag aagcagcaac agcacgggaa atttctaaat
     9841 cattcaaatt taaacaaagc ccatcaaagg tttcttgcgt aaaggtcagt ttttgaccaa
     9901 tgttcatgtc tgttgcgcta atcacagcaa aaggtccttt acgatttttc actaaatcac
     9961 caaacttttt accatgataa agggcaaaat ttaagcgttc ttgcaataaa tcaccacgcc
    10021 catattgagg agaacttaaa cgaggaagat tggataacga aaacacctct gtaataatat
    10081 ctttttgaaa gttcgctttt aaaaaacggt cagcaaattt aggaatgata tcctttcctt
    10141 ccaacgcaaa ataagtggct aatatcgatc cacctgatac gccaaaggca atatctatat
    10201 tctctaataa agtattacct ttatttgttt ctttcaccct taccttttta aactcttcca
    10261 acactccata accaagcgcc gccgctcttg ttccaccacc tgaaaacatg atgacaacaa
    10321 tattaccgtc ttttgcactt tcagcgatca catttttttg tcgataacct ctttcaacat
    10381 ttacctgttt aattgtttca actggcttat aaacaaccaa actgcaagca gataacacta
    10441 gcgtaaaggc gaagatgaaa agctgt
//
LOCUS       DANLVT010000084        10447 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.084, whole genome shotgun sequence.
ACCESSION   DANLVT010000084 DANLVT010000000
VERSION     DANLVT010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10447)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10447)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10447
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.084"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..448)
                     /locus_tag="PXC99_001802"
     CDS             complement(<1..448)
                     /locus_tag="PXC99_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
                     /protein_id="HDL5418236.1"
                     /translation="MNQSINQSINQSTNQPIVIALAADLGYQTQVETLIKSLCYHHSH
                     LKIYLFQKTFPNEWFDIWCQKLALLSSEIIPVKVCVDFSKYKSLEHINETGFYRYLIP
                     YLDEERVLYLDSDIVVDDNLSEMYWLNFNGIPLYAVEDYVHNHIPAY"
     gene            753..2459
                     /locus_tag="PXC99_001803"
     CDS             753..2459
                     /locus_tag="PXC99_001803"
                     /EC_number="2.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3-
                     cyclohexene-1-carboxylic-acid synthase"
                     /protein_id="HDL5418237.1"
                     /translation="MNTSSFNRTWAKVILSALMRYGVKHFCIAPGSRSTPLTLAAVQL
                     QQTQYAECHTHFDERGLGFYALGIAKATDSPVAIIVTSGTAVANLYPAVIEASLSHQK
                     LIILSADRPTELIGCGVNQAIHQQGIFANYPVASVNLPKANEAYHASWLVSTIEQACT
                     TQAQQGGVLHINVPFEEPLYEADINEILNTPWLRPIQGWLNNAQTKWIDQQAIQSEVS
                     MHENWDYWRTKRGVIVVGKLPPEQGTGLKTWAETMGWCLLSDVQSCIEASLPYADIWL
                     SNETVKQRLLQADIVIQFGTQIVSKRVNEFLKAFQGEYWVVEQSHDYHNPNAHHQTRF
                     IAKAHHFLRVHPPLRQKPWLLEPLALSQFCSTFIEQQVGGSLSEASLAHNIQDVLAIN
                     GNLFIGNSLFVRLVDALCKLPEGYPVYTNRGASGIDGLIATMAGIAKGSDRPTVGVVG
                     DISALHDLNSIALLTKINQPTILFVVNNSGGALFDMLPVDSKAKDQYYRLAHNFEFAQ
                     VATMFGLEYIRPFTWADLKTKLKHAYARKGVTIVEIKVNEHDGSNMYKSLLKQISQAE
                     IA"
     gene            2508..3347
                     /gene="menH"
                     /locus_tag="PXC99_001804"
     CDS             2508..3347
                     /gene="menH"
                     /locus_tag="PXC99_001804"
                     /EC_number="4.2.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase"
                     /protein_id="HDL5418238.1"
                     /translation="MLSYQWHAQQGTPVVFLHGLLGSQQDWQAVLQHLQNFPQIRPLT
                     IDLPFHGNSKHITCADFANLRQQLHATLESLIGSRPFYLVGYSLGGRAALDYVLNMEN
                     PNLQGVVLEGANIGLSTENDRQIRRQNDRHWANRFRQEPIEQVLEDWYKQPVFADLSD
                     TERECYIDSRKHNQGEQIAQMLEATSLAKQPDYTEKLKQTDKNIVFFIGEKDQKFRKM
                     ASSHQLPTQLIANAGHNAHRANAKNFVEKLGLLILHSDSDLRSQSVKHNGAALLHKSP
                     SGA"
     gene            complement(3396..4073)
                     /locus_tag="PXC99_001805"
                     /pseudo
     CDS             complement(3396..4073)
                     /locus_tag="PXC99_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251475.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            4159..4821
                     /locus_tag="PXC99_001806"
     CDS             4159..4821
                     /locus_tag="PXC99_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heteromeric transposase endonuclease subunit
                     TnsA"
                     /protein_id="HDL5418239.1"
                     /translation="MRKTHSFQQVRKIKPTWMSVSGHIPFRNGVSIPYESTLERDFLM
                     YFTYLPSVDEVVSQPTTLPFVKNGITYTYTPDFFLSFTDGRKPMLIEVKPKAKWQKHW
                     KEWKEKWKAAIRFCQENGYVFHVYDEDRIRHLALFNLNYVQRYKRIQHEQEDIDAILA
                     QVKLMGNTTIDYLLSRFFAGSLYRMKGLQIIYHLLATKQLHCNWFLPLNEFTEVWGNN
                     DE"
     gene            4811..6739
                     /locus_tag="PXC99_001807"
     CDS             4811..6739
                     /locus_tag="PXC99_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HDL5418240.1"
                     /translation="MMSNSGFTEKRYHHRLDRGRIILQKGNIYLNREDGEQYELVDYM
                     DEPSQLLVRNLNTRTTKVVSIHQLENFKMNERTDLSVDVTAISNEYWEKAQQKYEAIK
                     PLLGMDQHRPYAVKARAEDVGVNPRTLYRWLQAYNSIGSIAGLVDQKRGWQQGNSRLT
                     PEQDKLIVQVINEFYLHKQRPTTEQTIREIRRRCKIEKVESPSKETIRMRILHISEEE
                     RLRKRGQREKARNKFKPKPNSFPDADYPLSVVQIDHTPVDLIIVDSKYRKPIGRPFLT
                     VAIDIYSRMIVGYYLSLDAPSVTSVAMCIARGILPKERLLLDLGLQGSEWNAFGYPVK
                     VHVDNGPDFQALDLSKSCSAHGIHLEFRPMGRPEYGGHIERVIGTFMKEVHSLAGTTF
                     SNIKERDSYDSEKEAIMTLDEFEKWLVHYIVNVYHKRVHSALGISPEQKWKIGIFGDE
                     NEVGCGYPQLPVDEQTLLLDFLPSITRTIQHNGVTIDGLRYYDVALNMYISDSDESGK
                     SKEFLFRRDPRNISKIWFYDPKLKRYFPIPFANQAMPEMSIWEYREVRSRIANKGDKY
                     INEQQVLDGLTEMREMVAESAQRTKKARRQAERQKMHKASKPIIETKVETKAVVPVVV
                     TSNLLALDDESLSFGEVD"
     gene            6739..7626
                     /locus_tag="PXC99_001808"
     CDS             6739..7626
                     /locus_tag="PXC99_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TniB family NTP-binding protein"
                     /protein_id="HDL5418241.1"
                     /translation="MQYEHVHEKFRHLVTADNQERIAFLDEPRWLGYGVAKDIMDNLV
                     SLMNKPKRPRMLNLLIVGDSNNGKTTLIRRFFDLYGQAYIDSDSNAIYPILLAEAPPS
                     ANEKELYISLLERFYVPYKPTDTIAKLRYQTIHLFREFRVKMLVIDEFHSLLVGTPRL
                     QRQVMNAIKMLCNELQIPIVGVGTRDAIRVLHTDRQHASRFDVAELPIWKLDKEFQKL
                     LFQFQGILPLRESSNLQSPELATKIHTISGGNLGNVHRLLTACAVQAITSGTEKITLD
                     IIEKNSWVQPTNGYRKIIG"
     gene            7584..8690
                     /locus_tag="PXC99_001809"
     CDS             7584..8690
                     /locus_tag="PXC99_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TniQ family protein"
                     /protein_id="HDL5418242.1"
                     /translation="MGTTNKRLSQNNRIKKGVIHTPIYSNESISSWLIRASFDCGTDP
                     LTFTGFYWEKHRLWTLDLDRGLENIEPTIYDDVQALSGKIQLSEYSLFRRLYPINADE
                     TLAKGQVRWVIPRSARNRTHHIGQQYCPLCLDESPHLRNDWRLAWNFGCLKHNMMLAN
                     RCFCCGTLYQPHLLSAEKRHLNHCHQCGGKLEQGTMEMSLAEKLTLQGINQVLEKDSG
                     ICFGYKVSGKVWFDMLRYCINLLRRASDRPNHALAKFVVNLQIDVENICSPKTGLSFE
                     QLPLGERTNLLVNAYHILGMEADSIRSAIYLCGGTQKTFMFEKYPDFWQEFMALAPAG
                     PNRTRKRTKPQNESITAINRRWERLKRKLHLNNE"
     gene            8687..10111
                     /locus_tag="PXC99_001810"
     CDS             8687..10111
                     /locus_tag="PXC99_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418243.1"
                     /translation="MKINVIKPQEEPCSACGKISRIWRRYNGEGYCANCYAKWFPKKE
                     CSCCHQPKRIYLSSTVCWDCEKQTDCVRCGKAAGTFKIGKITRYGAVCNVCSRYFREE
                     RECFECGQLSRTMLRASESGHSELLCLKCFQKYRFATCKNCRRYRKVHDRDNQLCRKC
                     SEQRTSQCPKCKQDMPAGYGNICADCSRRTLLFNLIRMNVHLFRHKKVKRAYKKFIFW
                     YLAKCGVSVVLKKSDDHVLFFMRCDENWGNIPDYRELVTFFKPNGLRTHLTVLRWLLD
                     TNQVKVDESLKEEMAGLERIQSLFNKLSNSVPCIANYYTQLQHKYEAGKTSLKSVRLA
                     LQPAIDFISSESVSLLPTQVQLNSYLVAKTGQIAAITGFINHLNREYHCELEIDRSLI
                     QKMKEKQLKQQAKQRLAILYKQEKLSIKEQNELLSVVLLNLHNIWIKSPKKLSISEID
                     GIAYYVDNEKKYFIPKDIHIRLME"
     gene            10226..10432
                     /locus_tag="PXC99_001811"
     CDS             10226..10432
                     /locus_tag="PXC99_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA delta(2)-isopentenylpyrophosphate
                     transferase"
                     /protein_id="HDL5418244.1"
                     /translation="MTLKAQFREWLKKEQEHDEMIGFAHIPCILSKVDSKLAIVSGNA
                     YEKKYLRYWIKCFRFDRNISKYIK"
BASE COUNT         3269 a         2072 c         2210 g         2896 t
ORIGIN      
        1 gataagccgg tatatgatta tgaacataat cctctactgc atataaaggt ataccattaa
       61 aattaagcca gtacatttct gataaattat catcaaccac aatatctgaa tctaaatata
      121 gtacacgttc ttcgtccaga tatggaataa ggtaacgata aaaacccgtt tcattaatat
      181 gctctaaact cttatatttt gaaaaatcta cacagacttt cacaggaata atttcactcg
      241 ataataaggc taatttttgg caccagatat caaaccattc attaggaaaa gttttctgaa
      301 atagataaat cttaagatga gaatgatgat aacaaagcga tttaattaag gtttcaactt
      361 gagtttgata gcctaaatca gctgctaatg caataactat tggttggttg gttgattgat
      421 tgattgattg attgattgat tgattgattg attgattgat tgattgattg gcatactatt
      481 ctccaaaata cttataagtc tataaaaaat ttacacttgt tctaatataa tgaataaaat
      541 tataaactaa aacacaaatt cgaaatacgt ttcttcgtaa atgctcttaa aaaagagaga
      601 gtttactaag taaagtgttg ctcaatagat agaaattttc acgaagtttt acaaaaacat
      661 tccaattttc tcctaaaaaa cttcccacaa taatttcact ttttgctaca atcctaacca
      721 tttatcgaat ttatcaatca gtagagaaga atatgaatac cagttctttt aatcgcactt
      781 gggcaaaagt gattttaagt gcattaatgc gttatggcgt aaaacatttt tgtattgctc
      841 cgggttctcg ctcaacaccg ctcacattag cggcagtgca acttcaacaa acgcaatatg
      901 cagagtgcca cactcatttt gatgagcgtg gtttaggttt ttatgcgtta gggattgcta
      961 aagcaaccga cagcccggtt gctattattg tcacttccgg cacagcagta gcgaaccttt
     1021 atcctgcggt gatagaggca agcctgagcc accaaaaact gattattctt tctgccgacc
     1081 gcccaaccga attaatcggc tgtggggtaa accaagccat tcatcagcaa ggtatttttg
     1141 ccaattaccc ggttgccagt gtcaatctac cgaaagcgaa cgaggcttac cacgcaagct
     1201 ggctggtttc gaccattgag caagcctgca ctacccaagc acaacaaggc ggtgtgttgc
     1261 atatcaatgt gccttttgaa gagccgcttt acgaagcaga cattaatgaa attctaaata
     1321 caccttggtt acgcccaatc caaggctggt tgaataacgc tcaaaccaaa tggatagacc
     1381 aacaagcgat tcaaagcgaa gtctcaatgc acgaaaattg ggattactgg cgaactaaac
     1441 gaggggtgat tgtggtcggc aaactgccgc cggaacaagg cacaggttta aaaacttggg
     1501 cggaaaccat gggttggtgc ttgctaagtg atgtgcaatc ttgcattgaa gccagcctgc
     1561 cgtatgccga tatttggctc tccaacgaga ctgtcaaaca gcgtttattg caagcggata
     1621 tcgtgattca attcggcacg caaattgtca gcaaacgggt gaatgaattt ttaaaagcat
     1681 tccaagggga atattgggtg gtggaacaat cgcacgatta ccataatcca aacgctcatc
     1741 atcaaacccg ttttattgcc aaagcacatc actttttgcg ggtacaccca ccacttcgcc
     1801 aaaagccatg gttgcttgag ccattggcat tatcgcaatt ctgctccact ttcatagagc
     1861 aacaagtggg tggcagctta agtgaagcct cacttgcaca caacattcaa gatgttttag
     1921 caattaatgg caacttattt atcggcaata gcttatttgt tcgattggtt gatgctctgt
     1981 gcaaactgcc ggaaggctac cctgtttaca ccaaccgtgg tgcaagcggt attgatggct
     2041 taatcgcaac aatggcaggc attgcaaaag gtagcgaccg cccgactgtc ggtgtggtag
     2101 gtgatatttc cgcattacac gatcttaact caattgcatt gctcaccaaa attaaccagc
     2161 cgaccatttt atttgtggtg aataacagcg gtggtgcgtt gtttgatatg ttgcctgttg
     2221 atagcaaagc gaaagatcaa tattaccgcc ttgctcacaa ctttgaattt gctcaagtcg
     2281 ccacaatgtt cgggcttgaa tatatccgcc cgtttacttg ggcagatcta aaaaccaaac
     2341 tcaaacacgc ctatgctcgt aaaggtgtta ccattgtgga aatcaaagta aatgaacacg
     2401 acggcagcaa tatgtataaa tcattgctaa aacaaatttc acaggcggaa attgcctaat
     2461 cacaactgcc cctcgccaat cctgcgaggg gtaaaaatgt atcgactatg ctttcctatc
     2521 aatggcacgc tcaacaaggc acacccgtgg ttttccttca cggcttgctc ggctcacaac
     2581 aagactggca agctgttctc caacatttgc aaaattttcc gcaaattcga ccgcttacca
     2641 ttgaccttcc ttttcacgga aatagtaagc acattacctg tgccgatttt gccaacctgc
     2701 gacaacaact acacgccacc cttgaaagcc taatcggctc acgacctttc tatttagtcg
     2761 gctactcact cggtggacga gcggcactcg attatgtgtt aaatatggag aatccgaatc
     2821 tgcagggcgt ggtgttagaa ggggcgaata tcggcttaag cacagaaaac gaccgccaga
     2881 ttcgccggca aaatgaccgc cattgggcaa accgtttccg tcaagaaccc atcgaacaag
     2941 tgcttgaaga ttggtacaaa cagcctgttt ttgcggattt aagcgatacg gaaagagaat
     3001 gttatattga tagcagaaag cacaatcaag gagagcaaat tgctcaaatg ctggaagcca
     3061 ccagcctcgc caaacagcct gactacaccg aaaaactcaa gcagacggat aagaatattg
     3121 tcttttttat cggtgaaaag gatcagaaat ttcgcaaaat ggcatcaagc caccaactac
     3181 caacacaact gattgctaat gcagggcata acgctcatcg ggctaatgct aaaaattttg
     3241 tggagaaatt ggggttattg atactccact ccgacagcga cctacggtcg caatcggtta
     3301 agcataacgg tgcagctctg ctgcacaaaa gccccagtgg ggcttaatca gccgtaggct
     3361 aaatataacc tagtacggct cagccgtgct aggtgttagg gctccccctg caaccgttgc
     3421 aataagcgat ccatcgcccg ataaccaagt gcttccgcta aatgcagttg ttgaatattc
     3481 gcctcgccgg ctaaatcagc aatagtccga gaaactttca aaatacggtg gtaggctcgt
     3541 accgataaac cgagctttgt caatgcagtt tctaaaaata gggcatcttg tgccgataat
     3601 tggcaatctc gctcaatttc tcgggtggtg agttgagaat tgattttacc tgctcgctca
     3661 aattgcattt ttctggctaa aaacactcgc ttgcgaacct gctcggtggt ctctcctcga
     3721 ttctccgtcc cactttgcaa tgctccttgt ggcaaaagtg gcacttctat agagagatcg
     3781 aaacggtcta agaaaggtcc ggaaaggcgg tttaaatacc gcattacctg ttggggcgaa
     3841 gtgcggttat gcgtgccttg ataatgccct gtcgggcttg ggttcatcgc tgcaattaat
     3901 tgaaagcgtg ccggaaattg tactttagcg ttggctcggg aaatcacaat ttcgcctgcc
     3961 tccaacggct gacgtaacgc atcaagcact ttacgttcaa attcaggcaa ttcatctaag
     4021 aacagcacac cgttatgggc aagtgaaatt tcccccggtt tggggatcga gccactgtaa
     4081 aaactagaaa taaatgtcat aaaaactaga aatagctgtc agattattta gaaaacaaga
     4141 aataggtgtc aaattattat gagaaaaaca catagttttc aacaggttag aaaaattaaa
     4201 cccacttgga tgagtgtatc ggggcatatt ccatttagaa acggagtcag tattccctat
     4261 gaatcgactt tagagcgtga ttttttgatg tatttcactt atctaccttc agtagatgaa
     4321 gtcgtctctc aaccgactac cctacctttc gtcaagaatg ggatcactta tacctataca
     4381 ccagatttct tcttgtcatt tacagacggt cgaaagccga tgttaatcga ggtcaaaccg
     4441 aaagcaaaat ggcagaagca ctggaaagaa tggaaagaaa aatggaaagc tgcaatacgt
     4501 ttttgccaag aaaacggtta tgtattccat gtgtatgatg aagatcggat tcgacatcta
     4561 gcgcttttca atctcaacta tgttcagcgc tataagcgaa tacaacatga acaagaagat
     4621 atagatgcta ttctagccca agtaaagctg atgggaaata ccactattga ctatttactc
     4681 tctcgatttt ttgcaggttc tctatatcgc atgaaaggcc tacaaatcat ctatcactta
     4741 ctggcaacga aacaactaca ttgcaattgg tttctaccac ttaatgaatt taccgaggta
     4801 tgggggaata atgatgagta actctggatt tacagaaaag cgctatcatc accgattaga
     4861 tcggggacgt attattttgc aaaaaggtaa tatttaccta aatagagaag atggagaaca
     4921 gtatgaattg gttgattata tggatgaacc ctcccaactg ctcgtacgaa atctcaacac
     4981 tcgtacaacc aaagtcgtca gtattcatca gcttgaaaat ttcaaaatga acgagcgaac
     5041 ggatctttct gtggatgtaa ccgctattag taatgaatat tgggagaaag cccaacaaaa
     5101 atatgaggca attaaaccgt tattagggat ggatcaacat cggccttacg cagttaaggc
     5161 tcgtgcagaa gatgttgggg tgaaccctcg tacattatac cgttggttac aagcctataa
     5221 ttccatagga tctatcgcag gtttagtcga tcaaaaacgt ggatggcaac aaggaaattc
     5281 ccgtttaacg ccagagcaag acaagctgat cgtgcaggta atcaatgagt tttacctaca
     5341 taaacaacgc ccaactactg agcaaactat tagagaaatt cgccgccgat gcaaaattga
     5401 aaaagtggaa agcccaagca aagaaaccat ccgtatgcgc attttgcata tttcagagga
     5461 agagcgatta cggaaacgcg ggcaacgaga aaaggcacgc aacaaattta agccgaagcc
     5521 aaatagcttt cctgatgcgg attatccatt gagtgtggta caaattgacc atacaccagt
     5581 tgacctaatt attgtggata gtaagtatcg taaaccgatt ggccgaccgt ttttgacggt
     5641 tgcgatagat atatacagca gaatgattgt tggttattac ctttcacttg atgcgccttc
     5701 tgtaacttcg gtggcgatgt gtattgcacg tggtattttg ccgaaagaac gcctactgct
     5761 tgatttaggt ttgcaaggct cagaatggaa tgcttttggc tacccagtga aagtgcatgt
     5821 ggataatggc ccagattttc aggctttgga tttatctaaa tcttgttctg cacacggaat
     5881 ccatcttgaa tttagaccga tggggcgacc tgaatatggc ggacatattg agcgtgttat
     5941 cggtacattt atgaaagaag ttcacagttt agcaggaaca acattctcca acatcaaaga
     6001 gcgtgactct tacgattcgg aaaaagaggc cattatgact ctcgatgagt ttgaaaaatg
     6061 gttggtacat tacattgtga atgtttacca caaacgtgtg cattctgctt taggcatttc
     6121 tcctgaacaa aaatggaaga ttggtatttt tggagatgaa aatgaagtgg gatgtggtta
     6181 tccgcaactt cctgttgatg aacaaacact actacttgat ttcttgccaa gtatcactcg
     6241 taccattcag cataatggtg taacaattga cggacttcgt tattacgatg ttgcgctaaa
     6301 tatgtatatc agtgattcag atgaaagcgg taaatctaag gaatttctgt ttcgccgaga
     6361 cccgcgaaat atcagcaaaa tttggtttta tgatccgaaa ttaaaacgtt acttcccaat
     6421 tccatttgca aatcaggcaa tgcccgaaat gagcatttgg gaatatagag aggttcgtag
     6481 ccgaattgcg aataaaggtg ataaatatat caacgagcaa caagttttag acggtttaac
     6541 cgagatgcgt gaaatggttg ctgaatcggc tcaacggacg aaaaaagcac gccgtcaggc
     6601 tgaacgacaa aaaatgcaca aagcaagtaa gccaattatt gaaacaaaag tggaaactaa
     6661 ggctgttgta ccagtcgtag taacatcgaa tttgcttgct ttagatgatg agagcttatc
     6721 ttttggtgag gtggactaat gcaatacgaa catgttcatg aaaaattccg ccatcttgtg
     6781 acagcggaca atcaggagag gattgcgttc ttggacgagc caagatggtt aggttatggt
     6841 gtcgccaaag acattatgga taatttggtt tctttaatga ataaaccaaa acgcccacga
     6901 atgttgaatt tgttgattgt cggcgattcc aataatggaa aaaccacact gatccgccgc
     6961 ttcttcgact tgtacggtca ggcgtatatc gacagtgatt ctaatgcgat ttaccctatt
     7021 cttcttgccg aagccccacc aagtgcgaat gaaaaagaat tgtacatctc attattagag
     7081 cggttctacg taccatataa gccgacagat acgatagcca aacttcgtta tcagactatc
     7141 catttgttcc gagaatttcg tgtcaaaatg ttggttattg acgagtttca ttctctgttg
     7201 gttggtacac cacgcttaca acgacaggtg atgaacgcaa ttaagatgct ttgtaacgag
     7261 ctacaaattc caattgtcgg tgttggtact cgtgatgcaa ttcgggtatt acatacggat
     7321 cgacaacatg ccagtcgttt tgatgttgcg gaattgccaa tatggaaact agataaggaa
     7381 tttcaaaaac tcctatttca attccaaggg attttacctt tgagggagag ttcaaatctg
     7441 caatctccag aacttgctac gaagatccac accatttcag gtgggaactt agggaacgtg
     7501 catcgcttac taacagcttg tgcagttcaa gccattacaa gtggcacgga aaaaatcacc
     7561 ttagacatca ttgagaaaaa ttcatgggta caaccaacaa acggctatcg caaaataatc
     7621 ggataaaaaa aggtgttatt cataccccta tttattcaaa tgaaagtatt agctcgtggt
     7681 taattcgtgc atcctttgat tgtggtacag atccactgac ttttacaggg ttttattggg
     7741 aaaaacatcg gttgtggaca ttagatttag atcgtggctt ggaaaatatt gagccaacta
     7801 tctatgatga tgtacaggca ttatcgggta aaatccaact ttcagaatat tccttgtttc
     7861 gcaggcttta ccctataaat gcagatgaaa ccttagctaa aggtcaagta agatgggtga
     7921 ttccacgttc ggcaaggaat agaacccatc acattggtca acaatattgt cctttgtgct
     7981 tggatgagtc gccacattta cgcaatgatt ggcggttagc gtggaatttt ggttgtctca
     8041 agcataatat gatgttggcg aacagatgtt tttgttgtgg tacattgtat caaccccatt
     8101 tactatcagc ggaaaagagg catttgaatc attgtcatca atgtggtggg aaactggaac
     8161 aaggcacaat ggaaatgagt ctagctgaaa agctgacatt gcaaggtatt aatcaggtac
     8221 tcgaaaaaga ttcaggcatc tgttttggat acaaggtgtc gggtaaggtg tggtttgata
     8281 tgctccgcta ctgcatcaac ttattgagac gtgcatcaga cagaccaaat catgccttag
     8341 caaaatttgt agttaatcta cagattgatg ttgaaaatat atgtagcccc aaaacaggac
     8401 tttcttttga acaacttccg ctaggtgaac gtacaaattt acttgtgaat gcctatcata
     8461 ttttgggaat ggaagcagat tctattcgta gtgcaattta tttgtgtggc ggaacacaaa
     8521 aaacctttat gtttgaaaaa tatcctgatt tttggcaaga atttatggca ctagcacccg
     8581 caggcccaaa tagaacacga aaacgcacca agccccaaaa tgagtctatc acagcaatta
     8641 atcgccgttg ggagcgtttg aaacgcaaac tacacttaaa taacgaatga aaattaatgt
     8701 aataaaacca caggaagaac cttgctccgc ttgtggcaaa atttctcgca tttggcgcag
     8761 atataatggc gaaggctact gtgccaattg ctatgctaag tggtttccga aaaaagagtg
     8821 cagctgttgc catcaaccaa agcgtatcta tttgagttca acagtatgtt gggattgcga
     8881 aaaacagact gactgtgtac gttgcggtaa ggctgcgggt acattcaaaa ttggtaaaat
     8941 tacccgttat ggtgcagttt gtaatgtgtg ttcacgttat tttcgtgaag aacgagaatg
     9001 ttttgagtgt ggtcaactat ctagaactat gcttcgagca tcagagtcag gtcatagcga
     9061 gctactctgc ttgaagtgtt ttcaaaaata tcggtttgcg acttgtaaaa actgtcgccg
     9121 ttatcgcaaa gttcatgacc gtgataatca gctttgtcga aaatgtagtg agcaacgaac
     9181 ttcacaatgc ccgaagtgca aacaggatat gcctgcggga tatggtaata tttgtgcaga
     9241 ttgttctagg cgaactctac tgttcaacct tattcgaatg aatgtgcatt tattccgcca
     9301 caaaaaagtg aaaagagcat ataaaaagtt cattttttgg tatctcgcaa agtgtggcgt
     9361 gagtgttgtg ctgaaaaaat cagacgacca cgtcctcttt tttatgcgtt gcgatgaaaa
     9421 ttggggcaac attccagact accgtgagtt ggttacattc tttaaaccca atggattacg
     9481 gacgcatttg actgtgttgc gttggttgct tgataccaat caagtcaaag tagatgagag
     9541 cttaaaagag gaaatggcgg ggttggaacg tattcaatcc ctatttaaca aattaagtaa
     9601 ctctgtacct tgtattgcaa actactacac gcagttacaa cataaatatg aggcgggcaa
     9661 aacatcactg aaatctgttc gattagcttt acaacctgcg attgatttca tcagttcaga
     9721 atctgtctcg ttactgccga ctcaagtaca actgaatagc tatcttgtgg caaaaacggg
     9781 acagattgct gctattacag gctttataaa ccacctgaac cgagaatatc attgtgaatt
     9841 agaaattgac cgctccctca ttcaaaagat gaaagaaaag cagttgaagc agcaagcaaa
     9901 acagcgatta gcgatactct acaagcaaga aaaactaagt atcaaagagc aaaatgagct
     9961 actctcagtc gtattactga atttgcacaa catttggata aaatcaccga aaaaattaag
    10021 tatttcagag atagacggta tagcctacta tgttgataat gagaaaaaat actttatacc
    10081 aaaagacatt cacatacgcc tgatggaata agctgtcgtc aatttttatt tttgcgatct
    10141 gtgtcgagaa aataatattt atgaatcgac agatgaaata atattgataa agtctctttg
    10201 tgtgttcaac aaacaggaga taaatatgac attaaaggct caatttcgtg aatggcttaa
    10261 aaaagagcaa gaacatgatg aaatgatagg gttcgcccat atcccttgca ttttatctaa
    10321 agtggatagc aaactggcga ttgttagcgg aaatgcttat gagaagaaat atctcagata
    10381 ttggatcaag tgttttaggt tcgatagaaa tatcagcaag tatattaaat aggttaaata
    10441 tctagct
//
LOCUS       DANLVT010000085        10002 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.085, whole genome shotgun sequence.
ACCESSION   DANLVT010000085 DANLVT010000000
VERSION     DANLVT010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10002)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10002)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10002
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.085"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(18..341)
                     /locus_tag="PXC99_001812"
     CDS             complement(18..341)
                     /locus_tag="PXC99_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418245.1"
                     /translation="MKNNFGYWLGRKIRAFKEWNHPTFLKYTYIILFLLITYQLRLWL
                     YAVFGAVISLIGIVLLADFMHENNAITQRRNILNELKEIKKLQENDCIKENLTGSHNG
                     TGNGC"
     gene            complement(354..848)
                     /locus_tag="PXC99_001813"
     CDS             complement(354..848)
                     /locus_tag="PXC99_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL5418246.1"
                     /translation="MLSGLKIESFSKEFKRDCFDSESELLNQYLKTQVSQDIKRRITS
                     CFLAVNSEQTVVGYYTLASTSLSLSDLPITLQRKLPRYPTVPAVLLGRLAVDKRVKGL
                     GLGQALLGNALKRVLRADIAAYALIVEAKDESAVNFYRKFGFIDFENEARKLFFPLDR
                     VRLS"
     gene            complement(848..1120)
                     /locus_tag="PXC99_001814"
     CDS             complement(848..1120)
                     /locus_tag="PXC99_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HDL5418247.1"
                     /translation="MATATARFEARMSQEVHMLLKRAASLEGRSLSDFVVGAALSAAR
                     KTVEQNDIIRLSVNDQELFAKALIDPPEPNLAMQKALALSSQILGE"
     gene            complement(1279..1707)
                     /locus_tag="PXC99_001815"
     CDS             complement(1279..1707)
                     /locus_tag="PXC99_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418248.1"
                     /translation="MRKLLVITALTLCTTPVFAADKNVIFSCTSTEGKPLTVKRVGND
                     YEYSYDKTTFKNPIKKAVTNDGSIIARGSGFTTYALELENDGLKYLVGFVQPNGNAKE
                     FIEPGATISQSKEQPSIGSVDCDTRKKSHYKFDVHLMNTL"
     gene            complement(1728..3734)
                     /locus_tag="PXC99_001816"
     CDS             complement(1728..3734)
                     /locus_tag="PXC99_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HDL5418249.1"
                     /translation="MKSQFKFKKTHLLVITVLFSSTSSISFADSITDKLEFSKSDSII
                     SDRVFYQIGGGTGYMAPPSRGNTKVVDLGIGWKANLTCGNFDIKTTIKNDLNGLKDGF
                     KDLMGNVIDSAKGAVASMPAMILQRANPQLYDLLTNGMYQGKLDFNRLKTSCEEMSKV
                     LADHTLGGKWGQAADLESYKQITSTQPDAKQAQKDLEDKKGKDGRVWVGGQRKGGQNQ
                     DPINVVGDVAKGGFNLLNKRNVLDSSPVSNCEGNLCQTWDTPQAAADFLTKIIGEQSI
                     STCKEDCGTKTSSKAGVGLSPEIEEEHIRTIVKLENVLNMDVPKSELLAELSSSSVPV
                     TRGLIESLRDDPDVELLSQRLSAEIATSKVMEKMLLARRAILAGMREPNVAQNADAQV
                     ELERVLNIIDREISQVKLEMDMQKMITGNTASVILQSKSEREALAGAHSLSQDSLDKR
                     VQGLENGNVALTDLETGSNINLSRRNIALSIPNIPNVAALIPTLPNRGGSGVGGNFPS
                     LAQISGSTMDQATGLLRNFEGFISKAQWDVNAHRVGYGSDTITRADGTVVKVTKDTVI
                     TKEDAERDLARRTAIFANNVRQELGDSHWNALPANAQAVLVSYAYNYGSLAKTKSVLD
                     AARRSAQTGDMTALATAVRNRQVDNNGINARRRNQEADYILGKN"
     gene            complement(3749..4690)
                     /locus_tag="PXC99_001817"
     CDS             complement(3749..4690)
                     /locus_tag="PXC99_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03756 family integrating conjugative element
                     protein"
                     /protein_id="HDL5418250.1"
                     /translation="MKRAFFSVLLSVSLAVPTTLYPQQVKASLNTASIAASSASTSCL
                     DYKVVGTCFWLFCTYFGCKVRTSTKIKHYLPEMVVSSYNQDGQTPWTELQSLNPGVKG
                     GEYRSPQRQYSQLTFKNADAFGHPQGAIGQLLGSTGYYCKSQTTPFIPYFLSGLDFFA
                     WRENMPEMFYPEALIPGMREVGRVGDSWGNIYPRSGWVTQAHDYKASATIVQRVADIV
                     TRTAQPHIYFPAAKKGGVGEWPPGPVEEGQARTHKWQMLYPQMSNTCSVFPNGGQTDT
                     YSSQISNQGDYAWALWRPYSCCKRRGQTFLYSIDWSH"
     gene            complement(4687..5130)
                     /locus_tag="PXC99_001818"
     CDS             complement(4687..5130)
                     /locus_tag="PXC99_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03757 family integrating conjugative element
                     protein"
                     /protein_id="HDL5418251.1"
                     /translation="MKASRFLGYFSIVTVVFSVVAQAQPNIIVYTTKMYPIQNSQLAS
                     QVYYLDQVENFEEEISRNLSKSPEIAEREIRAFFNSADWKAQEEQLKDAYQGVISGWQ
                     NGIKKVPAVFFNNLQSSPSVIYGMTDIQKALDEWHKWVQQHGESK"
     gene            5505..5858
                     /locus_tag="PXC99_001819"
     CDS             5505..5858
                     /locus_tag="PXC99_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418252.1"
                     /translation="MSQQTAGWDVIPFESSKTAKPSLFWKLGNKLGNIFVSAKHKAKS
                     KYVEVTKGINQRIAEEDEMRALELQMCLDEQAAEYEQEISRIKRKMFFRALFVAIIAF
                     LCGMATVFGTQLSLI"
     gene            5930..6175
                     /locus_tag="PXC99_001820"
     CDS             5930..6175
                     /locus_tag="PXC99_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL5418253.1"
                     /translation="MSVHIKLSCVGDILPIKLNEWTPEHRALHHEISHKALEAWQNRD
                     KGTQSVRFMQQMPARQGLHFRFLSVSEQDGKLIVSRS"
     gene            6184..6426
                     /locus_tag="PXC99_001821"
     CDS             6184..6426
                     /locus_tag="PXC99_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418254.1"
                     /translation="MFGKLFYKMNPKVLAKIGEDFRKAGYLMGAGFVGMVISNDQIST
                     SEGFVLFLWGLYIWIIGHIALHHSEKILNSKQGEPK"
     gene            6690..7532
                     /locus_tag="PXC99_001822"
     CDS             6690..7532
                     /locus_tag="PXC99_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418255.1"
                     /translation="MSDSVLNTYFKHALVKAGFPDTLDMEYSLSHCQGDGVAFYGRLG
                     TDDLIQLFNHLNPQKRKQKMFANLLTHIESWETHDDIGFEIIRNRFGYRYSHWNTMEL
                     YAKTADQLVFFNDSDARRNWYFPTSKVDKYKALWDGFIEDLEQYIKDISREMESVGYQ
                     IIEASPYQTETVFKFNTEKYLVELQRKPSEFYSELVDWAFGDMCDFEAAIEQICQGQL
                     CYADFEATVTDKKSEIQLGLARLSGISYSPNDRSFSGYRQELIGEAIASARHNAARFA
                     YLHA"
     gene            7647..8060
                     /locus_tag="PXC99_001823"
     CDS             7647..8060
                     /locus_tag="PXC99_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL5418256.1"
                     /translation="MKNEHNLEQLKYIWDNRNLENKVYQYLFHICIEPMKKGDWNRYT
                     IWLNFHGNLINVSDVVYRVVESQKLKDDIKIWYDKQYYCRPTKVETTGFISIFLHLFY
                     EGIARILLEQGMITETEAAEKSYNFRAANCFQRLL"
     gene            8074..8229
                     /locus_tag="PXC99_001824"
     CDS             8074..8229
                     /locus_tag="PXC99_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418257.1"
                     /translation="MEPRTVKVIYDDGDYFFTLINADEQTIRNYYAIGSSIGFDNTRK
                     IVAVEIL"
     gene            8309..9292
                     /locus_tag="PXC99_001825"
     CDS             8309..9292
                     /locus_tag="PXC99_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HDL5418258.1"
                     /translation="MNPQSNTQPKFDLYQEVTDKIIAALEQGTAPWLKPWDSVIPYGG
                     MPCNAISGRLYSGINVLLLWLSAAEHGYIQRKWITAKAAIEAGGHVRKGEKATLAVSY
                     RPYDREKTDDDGNLVLDDDGNPVIEHLASIKKHCLFNIEQCEKLPQDWYETVETPEQL
                     TDENQYAIFEEIRLMLKGMDLQVMVKPSNQAYYHPRNDHIVMPEMKQFHSPQKFHSVL
                     LHEMTHATGHQSRLARDGIVSGKARFGNKVYAFEELVAEMGCAFLCSHLGFADVPQNA
                     SYIESWIKVLREDKRAIFRASGKAREACQYMLDALNIAQLADKYEVFEEAA"
     gene            9382..9624
                     /locus_tag="PXC99_001826"
     CDS             9382..9624
                     /locus_tag="PXC99_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418259.1"
                     /translation="MLNLNLFKRPIEISTLESWSKFCDDVGKVAFVAVPAMLYSNYEF
                     WIKISSIIGLFIATYFCLVIGRNIRQFIEKEKSKWD"
BASE COUNT         2919 a         2005 c         1936 g         3142 t
ORIGIN      
        1 ttgtagctat ttagaattta acagccatta ccagtaccat tatgggatcc tgttaaattt
       61 tctttaatac agtcgttttc ttgtaatttt ttgatttctt taagttcatt aagtatatta
      121 cgtctttgtg ttattgcgtt attctcatgc ataaaatcag ctaacagaac aataccaatt
      181 aaggatataa ctgctccgaa tacagcatat aaccatagcc ttagctgata agttattagg
      241 agaaataata taatatatgt atatttgaga aaagtgggat gattccattc tttaaaagct
      301 cgaattttcc tgcctaacca ataaccaaaa ttatttttca taatcactct ccattaagat
      361 aatctcaccc tatctagtgg aaaaaataat ttcctagcct cattttcaaa gtcaataaat
      421 ccaaatttac gataaaaatt gaccgcactt tcatcttttg cctcaacaat taatgcgtaa
      481 gctgctatat ctgcacgaag taccctttta agtgcattac ctaatagagc ttgccctaac
      541 cctaatccct ttacacgctt atctactgct aatcgaccaa gtaggacggc aggtaccgta
      601 ggatatcttg gtaatttcct ctgtaatgta attggtaaat cagataatga aagacttgtt
      661 gaagccagtg tgtaatatcc tactactgtc tgttcagaat taacagctaa aaaacaagaa
      721 gtaatacgtc ttttaatatc ttgtgaaacc tgagttttga gatattgatt taataattca
      781 gattcactat caaaacaatc tcgtttaaat tccttgctaa atgactctat tttcaatccc
      841 gaaagcatta ttcccccaga atctgtgagc ttaatgccaa ggctttttgc attgccaaat
      901 taggttcagg aggatcaatc aatgctttag caaaaagttc ttggtcattc acagataatc
      961 gaataatatc attttgctca actgtttttc ttgctgcaga tagtgcagct ccaacaacaa
     1021 aatcactaag actacgccct tcaagagaag cggctcgttt taacagcata tgaacttctt
     1081 ggctcattct agcttcaaat cgtgcggttg cagttgccat atattttctc cttgaattat
     1141 ttagttttaa ttgtacgtat ttataccgta caaatcaagc atgacaataa aaaaatccct
     1201 tagattttca aacctaaggg atttacctac cgatctttgt gttttttaac gtgggctggc
     1261 cctagtgcca tacaggcatt ataaagtatt catcaaatga acatcaaact tataatggct
     1321 ttttttacga gtatcacaat caacagagcc gatacttggt tgttctttac tttggctaat
     1381 cgttgctccc ggctcaataa attcttttgc attgccattt ggctgaacaa agccgaccaa
     1441 atacttcaat ccatcatttt ccagctctaa tgcatacgtt gtaaaacctg aacctctggc
     1501 gataattgag ccgtcattag tgactgcctt tttaatcgga tttttgaagg ttgttttgtc
     1561 atacgaatat tcgtaatcat ttcctacccg tttaacagta agcggttttc cctccgtgct
     1621 ggtacaggaa aatattacgt ttttatctgc tgcaaatact ggggtcgtgc agagtgtaag
     1681 agcagtaatt actaataatt tacgcataaa tgtaactcct tataaggtta atttttacca
     1741 agaatataat cagcttcctg attccggcgg cgtgcattga taccgttatt atcaacctgg
     1801 cgatttctga cagcagttgc caaagcagtc atatcaccag tttgagctga tcgtctagct
     1861 gcgtcaagca cactttttgt tttcgctagt gagccgtaat tatatgcata agacaccaaa
     1921 acagcctgag cgttcgccgg taatgcattc caatgtgaat cacctaactc ttgtctcaca
     1981 ttgttcgcaa agatagcagt tctgcgagct aaatcacgtt cagcatcttc tttggtaatc
     2041 acagtatcct tggtcacttt aactacggta ccgtctgccc gtgtaatcgt atcggaacca
     2101 tatcctacac gatgggcatt cacatcccat tgagccttgg agataaagcc ttcaaaatta
     2161 cgcagtaacc ctgttgcctg atccatcgtt gaaccgctga tttgtgcaag tgatgggaaa
     2221 tttccgccta cacctgaacc acctctattt ggtagagtcg ggatgagagc tgctacattc
     2281 ggaatatttg ggatactcaa tgcaatattt ctacgagaga ggttaatatt agagcctgtc
     2341 tctaaatcag ttaatgcaac attaccgttt tcaagtcctt gaacacgctt atccagacta
     2401 tcttgggata aactatgagc accagcaaga gcttcccgtt cggatttact ttgcagaatc
     2461 accgaagccg tattgccggt gatcattttt tgcatatcca tttccagttt tacttgggaa
     2521 atttcacggt caataatatt gagtactctt tccagttcta cttgagcatc cgcattttga
     2581 gcaacattcg gctctcgcat accagctagg attgctcggc gagccagtag cattttttcc
     2641 attactttac tggtcgcaat ttcagcggat aaacgttggc tgagaagttc aacatctgga
     2701 tcatcacgga ggctttcaat caagccacga gtgacaggta cactacttga gcttaattca
     2761 gctaatagct cggatttcgg cacatccata ttcagtacat tttctaattt aacaattgta
     2821 cgaatatgtt cttcttcaat ttccggactt aaaccaacac cggctttcga actggtttta
     2881 gtaccacaat cctccttaca ggttgaaatt gattgctcac caataatctt agttaagaag
     2941 tcggcagcag cttgaggtgt atcccaagtc tgacaaagat taccttcaca atttgaaacc
     3001 gggctgctat ctaagacatt ccgcttattg agtaaattaa atccgccttt cgctacatca
     3061 ccaacgacat taattggatc ttggttttgc ccacctttac gttgcccacc aacccaaact
     3121 ctcccatctt tccctttttt atcttctagg tctttttggg cttgcttcgc atcaggttgt
     3181 gtcgaggtaa tttgcttata gctctctaaa tctgctgctt gcccccattt tcctcctagt
     3241 gtgtgatctg ccagaacttt agacatttcc tcacaggaag tttttagacg gttgaaatcc
     3301 agcttacctt ggtacatacc atttgtcagc aaatcgtaga gttgagggtt ggcccgttgc
     3361 aatatcattg caggcatact ggcaaccgca cctttagctg aatcaatgac attccccatt
     3421 aaatctttaa agccatcttt aaggccgttt aaatcatttt taatagttgt tttaatgtca
     3481 aaattgccac aggttaaatt cgctttccaa ccgatgccta aatcaacgac tttggtatta
     3541 ccacgactag gtggagccat ataacctgtt cctccgccga tttggtaaaa gacacgatct
     3601 gaaataatcg aatccgactt actaaattcc agtttatcag tgattgagtc agcaaaagag
     3661 atagaggaag tactggaaaa aagtactgtt attactaata gatgtgtttt cttgaattta
     3721 aattgtgatt tcattgcaag acctcgtttt agtgtgacca atcaatactg taaaggaatg
     3781 tttgccctcg gcgtttacaa caactataag gtcgccatag tgcccaagca taatcacctt
     3841 gatttgaaat ctgagaggaa taggtgtctg tttgcccccc atttggaaaa acagagcagg
     3901 tatttgacat ttgaggataa agcatttgcc atttatgtgt tctggcttgt ccttcttcga
     3961 caggtcctgg tggccattct ccaacaccac cttttttcgc tgccgggaaa taaatatgtg
     4021 gttgagcagt tcgggtcacg atgtctgcaa ctctctgcac aatggttgca gaggctttat
     4081 aatcgtgagc ttgtgttacc caaccggaac gtgggtaaat atttccccag ctatcgccta
     4141 cacggccaac ttcccgcatt cccggaatca gagcttccgg ataaaacatt tccggcatat
     4201 tttcacgcca agcaaagaaa tctaatccac ttagaaaata gggtataaat ggtgtggttt
     4261 gacttttaca atagtagcct gtacttccta ataactgacc aattgctcct tggggatgcc
     4321 cgaaagcatc tgcatttttg aaggttagtt gagagtattg acgttgcgga gaacgatatt
     4381 ctccgccttt tacgccagga ttgagagatt gtaattctgt ccacggagtt tgcccatcct
     4441 ggttataaga tgaaacgacc atttccggta aataatgctt aattttggtt gatgtacgaa
     4501 ccttgcatcc aaagtaggtg caaaataacc agaagcacgt tccgacgact ttatagtcta
     4561 aacagcttgt tgaggcactt gatgcagcaa tcgacgccgt attcaatgat gcttttacct
     4621 gttgaggata taaggttgtt ggtactgcta aacttacaga gagaagtacc gaaaaaaacg
     4681 ctcttttcat tttgattcac cgtgttgttg aacccattta tgccattcat ctagtgcttt
     4741 ttgtatatca gtcataccat aaatcacgct cggagaggat tgcagattat taaaaaacac
     4801 cgcaggcact tttttaattc cattttgcca tccactgatc accccttgat aagcatcttt
     4861 taattgctct tcttgggctt tccaatctgc tgaattaaag aatgctcgta tttctcgttc
     4921 ggcaatctcg ggggatttac tgagatttcg actgatttcc tcttcaaaat tctctacttg
     4981 atcaagataa taaacttggg aggcaagttg tgaattttga atggggtaca tctttgttgt
     5041 atagacaatg atattcggct gtgcttgtgc cactacagaa aacactactg ttactatgct
     5101 gaaatatcct agaaatctac ttgctttcat cactctcttt ccgaataaat aagcagaaaa
     5161 ttagcgagat ttttacatag aggataggaa aaactctttt caaaaaagag atattttttt
     5221 gagcaaaaaa tggttgattt tataaatgga tttcgtatga tatggaatat taagatgctg
     5281 tggaaacagc ccttaaaagt cgcataactc ttgagaagcg gcggctatcc atcgaggtag
     5341 ttgagttatt tacccaaaat gtctcccagc attctgaaag ggaacgctgc aaatttgcag
     5401 gaatgccacc taaacaccta ccttccgagg gatatttcaa ttcccttgga attgcgatct
     5461 cctgaggaat tttatttatt taacttttta taggagaact cgctatgagt caacaaaccg
     5521 caggatggga tgtgatccca tttgaatcgt caaaaaccgc aaaaccttct cttttttgga
     5581 aacttggcaa taagctcggt aatattttcg tttcggcgaa acataaagct aaaagcaaat
     5641 atgtcgaggt aaccaaaggc atcaatcaac gaattgctga agaagatgaa atgcgagcct
     5701 tagaattgca aatgtgctta gatgagcaag cagctgaata tgagcaggaa atttctcgca
     5761 ttaagcgtaa gatgtttttc agggctttat tcgttgcgat tattgccttt ttatgtggta
     5821 tggctaccgt ttttggtact cagctctctt taatctaatt taactcaccc atcggggaaa
     5881 tgctatttcc cttgtggtaa tacatttccc cttaattttg gagaaatgta tgtcagttca
     5941 tatcaaactc tcctgtgttg gagatatttt gccaatcaaa ctcaatgaat ggacaccgga
     6001 acatcgagcc ttacatcacg aaattagcca taaagctctc gaagcctggc aaaatcgaga
     6061 taaaggcact caaagcgtgc gatttatgca acaaatgcca gcccgacaag gactgcattt
     6121 ccgctttctg agtgtatcgg agcaagacgg caagctcatt gtcagtcgtt catagttggt
     6181 tcaatgtttg gtaagctttt ttacaaaatg aatcccaaag tactagctaa aatcggagaa
     6241 gattttagaa aagctggtta tcttatggga gctggttttg tcggaatggt aatttccaat
     6301 gatcagattt ccacatcgga aggatttgtt ctttttttgt ggggattgta tatttggatt
     6361 atcgggcata tcgcactaca tcattctgag aaaatactta attcaaagca aggagaaccg
     6421 aaatgagtcc gtacttttta ggtgctgcta ttggaacagc gttattggca acaattttta
     6481 ttgttctagt aacttgggca aatcgagata ttttgtttac aaaatcagat aagccacagt
     6541 ctaaatagca aaactccatt ctaacccata ggggaacaag ttccccgagg agcttgttct
     6601 ccgttttacc ttccttttac cctatcggga aatactttcc cgaattgggc ttaagtgttt
     6661 cccattattt tttattttgg agaaacatta tgtcagattc agtattaaac acttatttta
     6721 aacacgctct tgtcaaagct ggttttccgg ataccttaga tatggagtat tcactcagcc
     6781 attgtcaagg agatggagtc gcattttatg gtcggcttgg tacagatgat ctaatccagc
     6841 ttttcaatca tctcaatcca cagaaacgta aacagaaaat gtttgctaat ttgctaacgc
     6901 acattgaatc ttgggaaacc cacgatgata ttggttttga aattatacga aatcgctttg
     6961 ggtatcgtta ctcgcattgg aatacgatgg agctttatgc taaaactgca gatcagttag
     7021 tgtttttcaa tgatagtgat gctcgaagaa actggtattt tcctacttca aaagtggata
     7081 aatacaaagc attgtgggac ggatttatcg aagatttgga gcagtacatc aaagatattt
     7141 cccgtgaaat ggaatcggtc ggttatcaaa ttattgaagc ctcgccgtat caaacggaaa
     7201 ccgttttcaa atttaatacg gaaaaatatc tagtagaact gcaacgtaaa ccttctgagt
     7261 tttattcaga gcttgttgat tgggcatttg gtgatatgtg tgattttgaa gcagctatag
     7321 agcagatttg tcaagggcaa ctctgttatg ctgattttga agcaactgtt accgataaga
     7381 aaagtgaaat tcagttaggt cttgctcgct tgagtggaat aagttactcg ccgaatgacc
     7441 gttcgtttag tggttatcga caagagctta ttggtgaggc gattgcctct gctcgccata
     7501 atgcagcacg ttttgcctac ttgcacgcct aatttgcaga tttttacttt aatttgaccg
     7561 cttgtagtgg ttaattttca ccccgtgggg aaatattttc cctattgggc aaaatgtttc
     7621 tccacttttt aatttggaga aatgttatga aaaatgaaca caatttagag caacttaaat
     7681 atatttggga taaccgcaac cttgaaaata aagtctatca atatctgttt cacatctgca
     7741 ttgagccgat gaaaaaagga gattggaatc gttatacgat ttggcttaat tttcacggta
     7801 acttaatcaa cgtgtcagac gttgtatatc gagttgtgga atctcaaaag ctcaaagatg
     7861 acatcaaaat ttggtatgac aagcaatact attgccgtcc aaccaaagtt gaaacaacag
     7921 gttttatttc catttttctg cacctgtttt atgagggcat agctcgtatt ttgctggaac
     7981 agggaatgat tactgaaact gaagcagccg agaaaagtta caacttcaga gctgcaaatt
     8041 gttttcaacg tttgctttaa tggaggtgag ataatggaac ctcgcactgt taaagttatt
     8101 tacgatgatg gcgattattt ctttacccta atcaatgccg atgaacagac tattcgtaat
     8161 tactacgcta taggcagttc aatcggtttt gataacacaa ggaaaattgt cgctgttgaa
     8221 attttataaa ctacccatcg gggaaacgac ttccccatag ggcgatagtg tttccccatt
     8281 tttctacccg aactttggag aaacacttat gaaccctcaa tcaaacacac agcctaaatt
     8341 tgatttatat caagaagtga ccgataaaat catcgccgct ttagagcaag gaacggctcc
     8401 ttggcttaaa ccttgggata gcgttattcc ttatggtggt atgccgtgta atgccatatc
     8461 cggaagattg tattccggaa tcaatgtttt gttactttgg ttgtctgccg cagaacacgg
     8521 ctatatccaa cgcaagtgga tcactgcaaa agcagctatt gaagccggtg gacacgttcg
     8581 gaaaggtgaa aaagcaaccc ttgcggtcag ctatcgcccg tatgatcgag aaaaaaccga
     8641 tgatgatggc aaccttgtcc tcgatgacga tggtaacccg gtaatcgaac atctcgcttc
     8701 gattaaaaag cactgcctat tcaatattga acagtgcgaa aaactgccac aggactggta
     8761 tgaaacggtt gaaaccccag aacagctgac tgacgaaaat cagtatgcta tttttgagga
     8821 gattcgtttg atgttgaaag gtatggattt gcaagtgatg gtaaaaccaa gcaatcaagc
     8881 ttactaccac ccacgcaatg accatatcgt gatgccggaa atgaagcagt ttcattcacc
     8941 acaaaaattc catagcgtgc tgctacatga aatgactcac gcaacagggc atcaatctcg
     9001 ccttgctcgt gatggtattg tttccggaaa agctcgcttt ggcaataaag tttatgcttt
     9061 tgaagaattg gtcgctgaaa tgggctgtgc attcttgtgt tctcacctag gctttgctga
     9121 cgtgccacaa aatgccagct acattgaaag ttggatcaag gtgttaagag aggataaacg
     9181 ggcaattttc agggcttcag ggaaagctcg ggaagcctgt caatatatgc tggatgcctt
     9241 aaacatcgca cagctggctg ataaatacga agtatttgaa gaagccgctt aataaatttg
     9301 ccgaaaggca tttcccgtgg ggagatactc tcccttcggg gcattgtgtc tcccttttta
     9361 ttcacttaac gagaggactc aatgctcaat ctaaacttat ttaaacgacc cattgaaatt
     9421 tcgacacttg aatcttggtc aaaattctgt gatgatgttg gtaaagtagc ttttgttgca
     9481 gtacctgcta tgctgtatag taattacgag ttttggatta agataagcag tataattggt
     9541 ctatttatag ctacctattt ctgtttagtt atcggtagaa atatacgcca atttattgag
     9601 aaggagaaat caaaatggga ttaatgatcg gcatttggat tattgctttt attgcatttg
     9661 ggttggccat atggacaagc catattctaa aaaagcaaga tgaacgcctt aaacagctaa
     9721 aaaatagcta actttcaaaa tacggcacat tttgtgccgt atttcttttg tactggtggc
     9781 aaatataaga ttactatcat cagtatattg taatatctca actcaacagc attagtcaaa
     9841 aatcctccaa catattcaga gagtttttcc tactgagttc tcttattttt tggttcaata
     9901 ctctcccttt ataaattaaa tttggttcag ataaaagccg ctcaatggca aaaggataaa
     9961 ggagccctta cgggcaaggg taatccccta agggggaata ag
//
LOCUS       DANLVT010000086         9980 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.086, whole genome shotgun sequence.
ACCESSION   DANLVT010000086 DANLVT010000000
VERSION     DANLVT010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9980)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9980)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9980
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.086"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            35..934
                     /locus_tag="PXC99_001827"
     CDS             35..934
                     /locus_tag="PXC99_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418260.1"
                     /translation="MVMAEENNTWVDKKHETVSTTLDRWANNINSWLGDADPDKPGTA
                     SLRVMLDSRWDKHDKFTYKPRVRGKIKLPILKKHLNVVFGDDELDNELTDKNHAGKLY
                     KNVNPNKRYNSREARDSNSSIGLRWSDGIKALGIETDLDAGIRSGSDIFGRLRISKDW
                     KITDQFSTRLEQIYRYGSESKHYLRTNFENKYTETDTTFIMNHTNFEYRHDVDEERSW
                     GNSLYRQHNFKPLTHISYGISMGGRLDKELSKFNYWGPFVSYRQPIWRNWLFIQPEIS
                     FYNDKDKDRKHFIQTFVRLEAIF"
     gene            1284..5309
                     /gene="rpoB"
                     /locus_tag="PXC99_001828"
     CDS             1284..5309
                     /gene="rpoB"
                     /locus_tag="PXC99_001828"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HDL5418261.1"
                     /translation="MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSFEKFIEKDPE
                     GQQGLEAAFRSVFPIVSNNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRL
                     VSYDREAAAGTVKDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD
                     KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTE
                     EILNLFFEKIKFEIADNKLLMTLVPERLRGETASFDIAANGKVYVEMGRRITARHIRA
                     LEKDNVTQIEVPVEYIVGKVAAQDYVDLSSGEVICPANMEISMEMLANLSQAGYNQIE
                     VLFTNDLDHGPYISETLRVDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSA
                     ERYDLSAVGRMKFNRSLEIPEGVGSGILSNDDIIGVMKKLIEIRNGRGEVDDIDHLGN
                     RRIRSVGEMAENQFRIGLVRVERAVRERLSLGDLDGVTPQDLINAKPISAAVKEFFGS
                     SQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEG
                     PNIGLINSLSVYARTNNYGFLETPFRKVVNGQVTEEIEYLSAIEESNNIIAQANSNLD
                     ENFRFTDTYVTCRQQGESGLFKPEEVQYMDISTQQVVSVAAALIPFLEHDDANRALMG
                     ANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAIVAKRGGTVQYVDASRIVVKVNEDE
                     TIPGEAGIDIYNLIKYTRSNQNTCINQVPCVNLGEPVARGEILADGPSTDLGELALGQ
                     NIRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCVARDTKLGAEEITADIPN
                     VGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK
                     DSSLRVPNGTSGTVIDVQVFTRDGVEKDKRAKEIEEMQLCEAKKDLAEELEILEAGLF
                     TRVRNLLIEGGVKESALDGVAREKWLEQTLEDEAKQNQLEQLAEQHEELRKEFERKLE
                     IKRNKIIQGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYD
                     ENGQPVEIVLNPLGVPSRMNIGQILETHLGLAAHGIGDQIDKMIKQQQEVAKLREYMQ
                     KAYDLGHGSQVVDLSTFSDEEVMRLAQNLRKGLPLATPVFDGAHESEIKGLLELGGLP
                     TSGQITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA
                     QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGTHYMEPGIPE
                     SFNVITKEIRALAIDMELDEA"
     gene            5572..9855
                     /gene="rpoC"
                     /locus_tag="PXC99_001829"
     CDS             5572..9855
                     /gene="rpoC"
                     /locus_tag="PXC99_001829"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HDL5418262.1"
                     /translation="MKDLVKFLKAQTKSNEDFDVIKIGLASPDKIRSWSFGEVKKPET
                     INYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRER
                     MGHIELACPVAHIWFLKSLPSRIGLILDMPLRDIERVLYFESYVVTEPGMTDLEKNQL
                     LTEEQFMDAEERWGDEFEAKMGAEGIQALLRDLDLEHQCETLREELQETNSETKRKKI
                     TKRLKTLEAFLQSGNKPEWMVMTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINR
                     NNRLKRLLDLVAPDIIVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKG
                     KQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFRPFIYSKLENRGIA
                     STIKAAKKMVEREDPIVWDILAEVIREHPILLNRAPTLHRLGIQAFEPLLIEGKAIQL
                     HPLVCAAFNADFDGDQMAVHVPLTLEAQLEARALMMSTNNVLSPASGDPIIVPSQDVV
                     LGLYYMTREKVNGKGEGMYFLDPREAEKAYRTGQAELHSRVKVRVTEYEKNEAGELEA
                     KTSLVDTTIGRSILWMIAPKGMPFSLFNQTLGKKAISKLINESYRRLGLKESVVLADQ
                     IMYTGFAYAARSGASVGIDDMVIPEQKYAIIEAAEAEVAEIQEQFNGGLVTAGERYNK
                     VIDIWAAANERVAKAMMENLSTEEVINREGNPEKQASFNSIFMMADSGARGSAAQIRQ
                     LAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLT
                     RRLVDVAQDLVIIEDDCGTHEGIVMTPLIEGGDVKEALRDRVLGRVVAEDVLKPGTDE
                     VLIPRNTLLDEKWCDVVDRESVDVIKVRSVVTCDTDFGVCAKCYGRDLARGHLINQGE
                     AVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNAGTIKLTNAKFVTNKEG
                     KIVLTSRNTELTVIDTFGRTKENYKVPYGAVLSKHDGAEVAVGEVVANWDPHTMPVIS
                     EVSGRIQFSDIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPALRLVDSNGKD
                     ILIPGTDVAAQYFLPGKAIVTLDDGAEIEVGEALARIPQESVGTKDITGGLPRVADLF
                     EARKPKEPAILAEISGIVSFGKETKGKRRLVITPAEGEAFEEMIPKWRQLNVFEGEMV
                     QRGDVISDGAETPHDILRLRGVHAVTDYIVNEVQEVYRLQGVKINDKHIEVIVRQMLR
                     KAVITNAYDSEFLEGEQVEVARVKIANRKRAEEGKPLVEFERELLGITKASLATESFI
                     SAASFQETTRVLTEAAVAGKQDELRGLKENVIVGRLIPAGTGFAYHQARAKKRAQLEA
                     GIAVVPEFEAPAAKANSFVTDADIEAEFEFVADDATQSLAALLNAGEEE"
BASE COUNT         2974 a         1980 c         2360 g         2666 t
ORIGIN      
        1 atgtcttatt ccgctactag cacttacacc tgttatggtg atggcagaag aaaataacac
       61 ttgggtagac aagaaacatg aaacagtaag cactacctta gatcgttggg caaacaatat
      121 taacagttgg ctaggtgatg cagacccaga taaaccggga acggcttctt tacgggtaat
      181 gttagatagc cgttgggata aacacgataa atttacttat aagccccgtg ttcgtggtaa
      241 aatcaaactc cctatcttga aaaagcatct aaatgtcgta tttggtgatg acgaactgga
      301 taatgagctt accgataaaa atcatgctgg aaaattgtat aaaaacgtca atccaaataa
      361 acgctataac tctcgtgaag cgagagattc gaactcttct atcggtttac gttggtctga
      421 tggcattaag gctttaggga ttgagaccga tttagatgct ggtattcgtt cgggaagcga
      481 tattttcggg cgtttacgca tcagtaaaga ttggaaaatc accgaccagt tcagtacccg
      541 cctagagcaa atttatcgtt acggttcaga gagcaagcac tatttacgta ctaactttga
      601 aaataaatat accgaaacgg ataccacctt tattatgaac cacaccaatt ttgaatatcg
      661 tcatgatgta gatgaagaaa gaagttgggg gaatagttta tatcgtcaac ataacttcaa
      721 accactcacg cacatcagct atggtatcag tatggggggg cgtttagata aagagttatc
      781 aaaatttaac tattggggtc catttgtctc ctatcgtcaa ccaatctggc gcaactggct
      841 ctttatccag cctgaaatca gtttttataa cgacaaagat aaagatcgta agcactttat
      901 tcagacattt gtacgtttag aggctatctt ctagctatta agcctcaagt agaatcttgg
      961 ggcttgtttt tgcaagcggt caatttcttg ccaaaattta caaaatccgc tataattcct
     1021 aaccattttt agcaaaaatt ggctgacggc ttgaccggtc agccttttgt gcttgaacgc
     1081 aagggctgat tttgtcattt taatcagcaa aatttgcaaa tttcctgccc aatttgaccg
     1141 cttgcagtag cgatttctga ctgcttgatt ggcgattgga aaatgacatc tcgtacagtt
     1201 tttataatgc cacttccaac cgagtctttc gtgtcggatt gtgtaatctc aaccaaaata
     1261 tatttcagag gctatcttaa aaaatggcat attcatattc cgagaaaaag cgtatccgta
     1321 agagctttgg caaacgccca caagttctga acgtacctta tctattaaca attcagcttg
     1381 attcttttga aaaatttatc gaaaaagatc ctgaagggca gcaaggttta gaagcggcat
     1441 tccgttctgt tttcccgatt gtgagcaaca atggtgcaac agaattacaa tacgtttctt
     1501 acgaattagg cgagccggtg tttgacgtgc gtgagtgcca aattcgtggt acaacctacg
     1561 ctgcaccatt acgcgtgaaa ttgcgtttag tctcttacga tcgtgaagcc gcagccggta
     1621 cggtaaaaga cattaaagag caaaacgtgt atatgggcga aatcccatta atgaccgata
     1681 acggtacttt cgtgattaac ggcaccgagc gtgttatcgt ttctcaatta caccgtagcc
     1741 caggtgtgtt cttcgattct gacaaaggta aaacccactc ttcgggtaaa gtgctttata
     1801 acgcacgcat tatcccttac cgtggttctt ggttagattt cgagtttgat ccgaaagata
     1861 acttatttgc ccgtatcgac cgccgtcgta aattgccggc aaccattatt ctacgtgcat
     1921 taggctacac caccgaagaa atcttaaatt tattcttcga gaaaattaaa tttgaaattg
     1981 ccgataataa attattgatg acgttagtgc ctgagcgttt aagaggcgag actgcatcat
     2041 ttgatattgc agcaaacggc aaagtatatg ttgaaatggg tcgccgtatt accgctcgtc
     2101 atatccgtgc gttagaaaaa gacaatgtga cccaaattga agtgccggtg gaatatattg
     2161 tcggcaaagt agcggctcaa gattacgttg atttatcttc aggtgaagtg atttgcccgg
     2221 cgaatatgga aatctcgatg gagatgttgg cgaatttatc acaagccggt tacaaccaga
     2281 tcgaagtatt atttaccaac gatttagacc acggtccata tatttctgaa accttacgtg
     2341 ttgatccaac ttacgaccgt ttaagtgcgt tggttgaaat ctatcgtatg atgcgtccgg
     2401 gcgaaccacc aacgaaagaa gcggcagaag cattattcga taatatgttc ttctcggcag
     2461 agcgttatga tttatcggca gtaggtcgta tgaaattcaa tcgctcgtta gaaattccgg
     2521 aaggcgtagg cagcggtatt ttaagcaacg atgacatcat cggtgtgatg aaaaaattaa
     2581 tcgaaatccg taacggtcgt ggtgaagtgg atgatatcga ccacttaggt aaccgtcgta
     2641 tccgcagcgt tggtgaaatg gcagaaaacc aattccgcat tggtttggtg cgtgtagaac
     2701 gtgcggtgcg tgagcgttta tctttaggcg atttagatgg tgtaacacca caagatttaa
     2761 tcaacgctaa accgatttca gcagcagtga aagagttctt tggttcatca caactttcgc
     2821 aatttatgga ccaaaacaac ccgctttcag aggtaacaca taaacgccgt atctcggcat
     2881 taggcccggg tggtttaacc cgtgagcgtg ccggctttga agtgcgtgac gtacacccga
     2941 ctcactatgg tcgtttatgt ccaatcgaaa ctcctgaagg cccgaatatc ggtttgatca
     3001 actcactatc ggtgtatgct cgtactaata actacggttt cttagagact ccattccgta
     3061 aagtggtgaa tggtcaagta accgaagaga tcgagtattt atctgcgatt gaagaaagca
     3121 acaatatcat tgcacaggcg aactcaaact tagatgagaa cttccgtttt accgatactt
     3181 atgtaacttg ccgtcagcaa ggcgaatcgg gcttattcaa accggaagaa gttcaatata
     3241 tggacatctc aacccaacaa gtggtttctg tggctgcggc gttaattccg ttccttgagc
     3301 acgacgatgc gaaccgtgcg ttaatgggtg cgaacatgca acgtcaggca gttccaacct
     3361 tgcgtgcgga caaaccatta gtcggtaccg gtatggaaaa accaattgct cttgactcag
     3421 gtgtagcgat tgtcgcaaaa cgtggtggta cggtgcagta tgttgatgcg tcacgcattg
     3481 tagtgaaagt aaatgaagat gaaaccattc cgggcgaagc gggtatcgat atttataact
     3541 taatcaaata cacccgttca aaccaaaaca cctgtatcaa ccaagtacct tgtgtgaact
     3601 tgggtgagcc ggttgctcgt ggtgaaatct tagcggacgg tccttcaaca gacttaggtg
     3661 aattggcatt aggtcaaaat atccgtgtgg catttatgcc ttggaacggt tataacttcg
     3721 aagactcaat gttagtttct gagcgtgtgg tacaagaaga tcgctttacc actatccaca
     3781 ttcaagaatt atcttgtgtg gcgcgtgata ccaaattagg tgcagaagag atcaccgctg
     3841 atattccaaa cgtgggtgaa tctgcattaa gcaaattaga tgaatcaggt atcgtttaca
     3901 tcggtgcaga agtgaaaggt ggcgacatct tagtaggtaa agtaactcct aaaggtgaaa
     3961 cccaattaac accggaagaa aaactattgc gtgcgatctt cggtgaaaaa gcctctgatg
     4021 tgaaagattc atcattgcgt gttccaaacg gtacttcagg tacggttatc gatgttcaag
     4081 tatttacccg tgatggcgta gagaaagata aacgtgcgaa agaaatcgaa gagatgcaac
     4141 tgtgtgaagc gaagaaagac ttagcggaag agttggaaat cttagaagcc ggtttattta
     4201 ctcgtgttcg caacctatta attgaaggcg gcgtaaaaga atctgcatta gatggcgttg
     4261 ctcgtgaaaa atggttagaa caaacccttg aagacgaagc gaagcaaaat cagttagaac
     4321 agttagcgga acagcacgaa gagttacgca aagaatttga acgtaaactt gagatcaaac
     4381 gcaacaaaat tatccaaggc gacgatttag caccgggtgt gttaaaagta gtgaaagttt
     4441 accttgcggt gaaacgccaa atccagccgg gtgataagat ggcgggtcgt cacggtaaca
     4501 aaggggttat ctcgaaaatc aaccctgtgg aagatatgcc atacgatgaa aacggtcagc
     4561 cggttgaaat cgtattgaac ccgctgggcg taccgtctcg tatgaacatc ggtcagatct
     4621 tagaaaccca cttaggctta gcggctcatg gtatcggtga tcagattgat aagatgatca
     4681 aacagcaaca agaagtggct aaattacgtg aatatatgca aaaagcctac gatttaggtc
     4741 acggctcaca agtcgttgat ttaagcactt tctctgatga agaagtgatg cgtttagcgc
     4801 aaaacttacg caaaggctta ccgcttgcta ctccggtatt cgatggtgca cacgaaagcg
     4861 aaatcaaagg cttattagag ttaggcggct taccgacttc aggtcagatc acactttatg
     4921 atggtcgtac cggtgagaaa tttgagcgtc cggtaaccgt tggttatatg tatatgctca
     4981 aattgaacca cttggttgat gataaaatgc acgctcgttc aaccggttct tatagccttg
     5041 ttactcaaca accattgggt ggtaaagctc aattcggtgg tcagcgtttc ggtgagatgg
     5101 aggtttgggc attagaagca tacggtgcgg cttatactct tcaagaaatg cttacggtga
     5161 aatcggacga tgtgaacggt cgtacgaaga tgtataaaaa cattgtagat ggtacacatt
     5221 atatggagcc gggtatccct gaatccttta acgtaattac caaagagatc cgtgcattag
     5281 caattgatat ggagctggac gaagcgtaat ggtttcactc tcccccttga tgggggagag
     5341 acaggcaaag gatttgttca gaatcctttg gcagagagag ggtgatgcaa gcggtgtaaa
     5401 tttgctaaat ttttgcaaaa atcgaccgct taccctctcc ctgattttgc ttctgaacga
     5461 ggcaaaatct atccctctcc cacaagggga gagggtttaa aatcgcaacc aaattcgtag
     5521 agtggatatt ctttccacca aacaaaacaa cctcaaacta ggggcaaaaa agtgaaagac
     5581 ttagtgaagt ttttaaaagc acaaacaaaa tcgaacgaag attttgatgt gattaaaatt
     5641 ggtttagcat caccggacaa gatccgttct tggtcttttg gtgaagtgaa aaaaccggaa
     5701 accattaact atcgtacctt caaaccggag cgtgatggtt tattctgtgc acgtattttc
     5761 gggccggtaa aagattacga gtgcttgtgt gggaaataca aacgtttaaa acaccgtggc
     5821 gtaatttgtg aaaaatgtgg tgttgaagta acccaaacta aagtacgtcg tgagcgtatg
     5881 gggcacattg aattagcttg ccctgtcgca cacatctggt tcttaaaatc actaccgtcc
     5941 cgtatcggtt taatcttaga tatgccgttg cgtgatattg aacgtgtgct ttattttgaa
     6001 tcttatgtag ttactgaacc gggaatgacc gatttagaga aaaatcagtt attaaccgaa
     6061 gaacaattta tggacgctga agagcgttgg ggtgatgaat ttgaagcgaa aatgggtgca
     6121 gaaggtatcc aagcattact tcgtgattta gatttagaac accaatgcga aaccttgcgt
     6181 gaagagttac aagaaaccaa ttcagaaacc aagcgtaaaa aaatcactaa gcgtttaaaa
     6241 accttagaag cattcttaca atccggcaac aaaccggaat ggatggtgat gacagtatta
     6301 ccggtacttc caccggattt acgtccgtta gtaccgcttg acggtggacg ttttgcgact
     6361 tctgacttaa acgatttata ccgccgtgta attaaccgta acaaccgttt aaaacgcttg
     6421 ttagatttag ttgcaccgga catcatcgtg cgtaacgaaa aacgtatgtt acaagagtcg
     6481 gttgatgcgt tattagacaa cggtcgccgt ggtcgtgcga ttaccggttc gaacaaacgt
     6541 ccgttaaaat ctttggcaga tatgatcaaa ggtaaacaag gtcgtttccg tcaaaactta
     6601 ttaggtaaac gtgtagatta ctcaggtcgt tcggtaatta ccgtaggccc atacttacgc
     6661 ttacaccaat gtggtttacc gaagaaaatg gcgttggaat tattccgtcc gtttatctac
     6721 tcaaaattag aaaaccgtgg cattgcttca actattaaag ccgcgaagaa aatggtagag
     6781 cgtgaagatc ctatcgtatg ggatattctt gccgaagtga ttcgtgaaca cccgattcta
     6841 cttaaccgtg caccaacact tcaccgttta ggtatccaag cgtttgagcc gttattgatt
     6901 gaaggtaaag cgatccagtt acacccactc gtgtgtgcgg cgttcaatgc ggacttcgac
     6961 ggtgaccaaa tggcggttca cgttccatta acccttgaag cacagttaga agctcgtgcg
     7021 ttaatgatgt caaccaacaa cgtactttca ccggcaagtg gtgatccgat tatcgtaccg
     7081 tctcaggacg ttgtactcgg tctttactat atgacccgtg agaaagtaaa cggtaaaggt
     7141 gagggaatgt acttccttga ccctcgtgaa gcggaaaaag cataccgtac cggtcaggct
     7201 gaattacatt ctcgtgttaa agtgcgtgtt actgaatatg agaaaaacga agcaggcgaa
     7261 ttagaagcaa aaacttcgtt agtagatacc accattggtc gttcaatctt atggatgatt
     7321 gcaccaaaag gtatgccgtt tagcttgttc aaccaaacct taggcaaaaa agcgatctcg
     7381 aaattaatta acgagagcta tcgccgttta ggtttaaaag aatctgtggt tttagctgac
     7441 caaattatgt acaccggctt tgcttatgct gctcgttctg gtgcctcagt aggtatcgac
     7501 gatatggtaa ttccggagca aaaatacgca atcattgaag cggctgaagc ggaagtcgct
     7561 gagatccaag agcaattcaa cggcggttta gtaacagccg gtgagcgtta taacaaagtg
     7621 atcgatattt gggctgctgc aaacgaacgt gttgcgaaag caatgatgga aaacctttca
     7681 acggaagaag taatcaaccg tgaaggtaat ccggaaaaac aagcctcatt taacagtatc
     7741 tttatgatgg cggactccgg tgctcgtggt tctgctgcac agattcgtca gttagcgggt
     7801 atgcgtggct tgatggctcg tccggacggt tcgattatcg aaaccccaat tactgcaaac
     7861 ttccgtgaag gtttgaacgt attacagtac tttatttcaa cccacggtgc acgtaaaggt
     7921 cttgccgata cggcattaaa aacagcgaac tccggttact taacccgtcg tttagttgat
     7981 gtggcacaag atttagttat cattgaagat gactgtggta cgcacgaagg tatcgtgatg
     8041 acaccactta tcgaaggtgg tgatgtgaaa gaagccctgc gtgatcgtgt attaggtcgt
     8101 gtggtggcag aagatgtgtt aaaaccgggt acagatgaag tattaattcc acgcaacacc
     8161 ttattagatg aaaaatggtg tgatgtggtg gatcgtgaat ctgtggatgt gatcaaagta
     8221 cgttcggtag taacttgtga tacagacttc ggtgtgtgtg ctaaatgtta cggacgtgac
     8281 ttggctcgtg gtcacttaat caaccaaggt gaagcggtcg gtgttattgc ggcacaatct
     8341 atcggtgagc cgggtacaca gttaacgatg cgtacgttcc atatcggtgg tgcggcttct
     8401 gcggcagcaa aagaatctag catccaagtg aaaaacgcag gtacgattaa attaaccaac
     8461 gctaaatttg taaccaacaa agaaggcaaa atcgtattaa cttctcgtaa tactgaatta
     8521 actgtcatcg acaccttcgg tcgtaccaaa gaaaactata aagtgcctta tggtgcggtg
     8581 ctttctaaac acgacggtgc agaagtggct gtgggtgaag tggttgcgaa ctgggatccg
     8641 cacacaatgc cggtaatctc agaggtatca ggtcgtatcc aatttagcga catcgtagat
     8701 ggcttaaccg ttactcgcca aaccgatgaa ttaaccggtt tatcatctat cgtggtgcaa
     8761 gatgtgggtg aacgtgcaac cgcaggtaaa gatttacgtc cggcattacg cttagttgat
     8821 agcaacggca aagacatctt aattccgggt acagacgttg cagcacaata cttcttaccg
     8881 ggtaaagcaa tcgtaacctt agacgatggt gcagaaattg aagtcggtga agccttagcc
     8941 cgtattccac aagaatctgt ggggacgaaa gatattaccg gtggtcttcc acgcgtagca
     9001 gacttattcg aagcccgtaa accgaaagag ccggcaatct tggcggaaat ttcaggtatt
     9061 gtgtcgttcg gtaaagaaac caaaggtaaa cgccgcttgg taattactcc ggcggaaggc
     9121 gaagcgtttg aagagatgat tccaaaatgg cgtcagctca acgtatttga aggcgagatg
     9181 gtacaacgtg gtgatgtgat atcagacggt gcagaaactc cgcacgacat cttacgctta
     9241 cgtggcgttc acgccgttac cgactacatc gtaaacgaag tgcaagaagt ttaccgctta
     9301 caaggggtaa aaattaacga caagcacatc gaagtgattg ttcgccaaat gttgcgtaaa
     9361 gctgtgatca ccaacgctta cgactctgaa ttcttagagg gcgaacaagt ggaagtggct
     9421 cgtgtgaaaa ttgccaaccg caaacgtgct gaagaaggca aaccgttggt agaatttgaa
     9481 cgtgaattgc ttggtattac caaagcatct cttgcaacag aaagctttat ttctgcagcc
     9541 tcgttccaag aaaccactcg agtgcttacc gaagccgcag tggcaggtaa acaagatgaa
     9601 ttgcgtggct taaaagagaa cgtaatcgtt ggtcgcttaa tcccggcagg taccggtttt
     9661 gcttaccacc aagcacgagc taaaaaacgt gcccaactgg aagcaggaat tgcagttgtc
     9721 cctgaatttg aagcaccggc agctaaagcc aattcattcg ttaccgatgc agacatcgaa
     9781 gctgaatttg aatttgttgc agacgatgca acccaaagtt tagcagcgtt gttaaatgcg
     9841 ggtgaggaag agtaatagct cgtagggtat gataaattaa aaaatctcct agaatataat
     9901 ttctaggagg ttttctactt gaatataagg gaaaaatata tagaatgtaa gggcttattc
     9961 aatttgtgga taaggtaatc
//
LOCUS       DANLVT010000087         9927 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.087, whole genome shotgun sequence.
ACCESSION   DANLVT010000087 DANLVT010000000
VERSION     DANLVT010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9927
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.087"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..376
                     /locus_tag="PXC99_001830"
     CDS             <1..376
                     /locus_tag="PXC99_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418263.1"
                     /translation="HFALVQAELKYSGSNIPSEYSKFNLENVLIDFPNKTNSVAYQNL
                     VIHNAKTRAGKLKTQYANAHDLGNLVLVEDIQKIFSGLLEIIYQVRCHLVHGSLSPTP
                     ENHEVVKYCYLILWDCLKGFCD"
     gene            complement(644..1381)
                     /locus_tag="PXC99_001831"
     CDS             complement(644..1381)
                     /locus_tag="PXC99_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5418264.1"
                     /translation="MIKIENLTLAHGIQHLSCYLPKGKLIGIMGANGAGKSSLLKAIA
                     GILRPTSGEIWLENCKLHALSAVERSRQFAYLAQQLNVAWQLSVYDVIALGLPAPLPP
                     EQERQKVRSVAEQLAISHLLDNTYQQLSGGEQTRVQLARCLMKQAPILLADEPIAALD
                     PYYQIDIMQQLKALTPTQTCVVVIHHLPLAYRFCDEIILLKNGNLLVSGNTQAVLNAE
                     NIATAFGVKAEMDWEKREMWGIEKLEV"
     gene            complement(1378..2346)
                     /locus_tag="PXC99_001832"
     CDS             complement(1378..2346)
                     /locus_tag="PXC99_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5418265.1"
                     /translation="MKKLNIVLGSLLLLIVSNAAFYQLSDFALLKNAEGVLSDLRWLV
                     LGEIRLPRIGLAVLTGASLALAGNAMQGVFKNPLASPGLLGSSSGATAVSVFLLYYFS
                     APMGWLLFGGVAGALGAFLLVWLISFRHGTTMMILSGVAVNVLLGAAVTLLLSNAESP
                     WALAELYRWLQGSLVWATAEAVCWALPLILLGIVCLYRERRYLDLLTFGEETAATMGI
                     NLQRSFFTVSIGVALLVGATIPQTGTIGFIGLIAPHLARIWLKKPPSQLYLTSALIGA
                     LLLLIADLAVQYVPFFARIYIGTLTAILGVPFLIWILFTQQWRLAQ"
     gene            2527..2862
                     /locus_tag="PXC99_001833"
     CDS             2527..2862
                     /locus_tag="PXC99_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5418266.1"
                     /translation="MYHIERTEIFDQWLENLKDPLAVVTIARRIERAESGNFGDTKYI
                     AEGISEMRLNVSKGYRLYYAQKGSIIYILLNGGHKGTQQADIDKAKMLWAEIKQHMAE
                     QEKKNERII"
     gene            2846..3169
                     /locus_tag="PXC99_001834"
     CDS             2846..3169
                     /locus_tag="PXC99_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative addiction module antidote protein"
                     /protein_id="HDL5418267.1"
                     /translation="MNELYDAPIPQATREKFGIQPFDAAEYLANDELIALYLAETLKD
                     GTDEEFIQALNTVARAKGMNELAKKAGIGRESLYQSLSSSKPRFETIRKIISALNLEL
                     SVVKA"
     gene            complement(3159..5045)
                     /locus_tag="PXC99_001835"
     CDS             complement(3159..5045)
                     /locus_tag="PXC99_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL5418268.1"
                     /translation="MTQLDSVTVYSAYATPINQDKTASSVTVLTEKDFAARNATYVSD
                     VLKTVPGVAIGQQGGRGTLTSLFLRGAESRHTAVVIDGVKVNPINIGNFDFGGLPISN
                     IERIEVLRGEQSALWGSSAMGGVVYITTKSGLYKEKPFNAEVDLGLGSNNTRDASATL
                     SGFHNGFYYALHGDSHRTKGISALSKNHFSYTTETGSEVKTGGASERDGFHRDNGSLR
                     LGYDLGNKGVEVLAAQSSQTVHIDGYNSDVSGEYSRTRNQTFKLGGYWGNEQELLKHQ
                     ANISQFNSKATHFGSNARYSNEKQLNANYQLDVNFDREGEVTQAVSLLTDYAKTRYTS
                     DKYLREKTLSEKSAALEYRLFTEQDHSFSISGRYTDNSQFKNSITGRISGAYRLSPNL
                     CSDRLLLELAEPQQIRAMSPYSQKPLMMLDKLNTDKPTVEPELTALLPYADSTILLNE
                     TFYPQLTARLKQLGFKLVALNDSPQTPEQLFTLILQLGELTQNQAKAEKLVERLRLQK
                     IPLKQPLAETLILSETGMIEPHFPQYQTLLDLLGLSPLKSDLTPQNFSLEKLLLAQPK
                     QLLFLTDNQSYNNQAELLKHPALQKIWQKMSQNPPLVLPMKYTYCFDHGVWQGIQLMH
                     KLTP"
     gene            5075..5875
                     /gene="metF"
                     /locus_tag="PXC99_001836"
     CDS             5075..5875
                     /gene="metF"
                     /locus_tag="PXC99_001836"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HDL5418269.1"
                     /translation="MQQKWRMLWDSIDRLSPLKPKFVSVTYGANSGERDRTHSIVKSI
                     QEKTGIISAPHLTGIDATPEELKVIAKDYWDSGIRRIVALRGDIPKGYDKALFYASDL
                     VALLKSVADFDISVAAYPEVHPEAKSAQADLLNLKRKIDAGANHVITQFFFDVESYLR
                     FRDRCVSIGIDCEIVPGILPVTNFKQLQKMAAVTNVKIPTWMGKMYEGLDDDQTTRNL
                     VAASIAMDMVKVLSREGVNDFHFYTLNRSELTYAMCHTLGVRPDLTTA"
     gene            complement(5924..7084)
                     /locus_tag="PXC99_001837"
     CDS             complement(5924..7084)
                     /locus_tag="PXC99_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418270.1"
                     /translation="MKKSILLILSLFSASLFADVQLSPLPLPQIGKVSQFDLSEQGEL
                     VVINQQKQLWRVTQQAQKLADGVSTEIEPKAQYQRIALADQNGHFMLWTADKIYTSNI
                     PLAPKATMTALNFATIAVTKQNGQFKLARIETQGNQATITATAETEVLPDAHPLQIDF
                     DAETPNQGHIAVLAKPDDFTYQHGVLGDDVEAGEIQFLERHTLNPLAEKLTQQGRVFE
                     ANRWATFTENGKTKIVSVISGDGNGASTVVIGVKDGKLSIEAESEPLSTNRWQSPFIF
                     NRKLYAIQMPHLKGNLVEYSLKGNQLAERFITSGLSNHRYGDHETNLVATTETFALIP
                     QMGYQQVVVLDKTGKITELPTALPAGIKQTKADSNKAYLLLKNGEIWVAEEK"
     gene            complement(7144..8160)
                     /gene="galE"
                     /locus_tag="PXC99_001838"
     CDS             complement(7144..8160)
                     /gene="galE"
                     /locus_tag="PXC99_001838"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HDL5418271.1"
                     /translation="MAILVTGGAGYIGSHTLVELLNENREIVVLDNLSNSSEVSLERV
                     KQITGKSVKFYQGDILDRDILRKIFAENQIESVIHFAGLKAVGESVREPLRYYQNNVT
                     GSIVLVEEMLKANVNTIVFSSSATVYGDPQIIPIVESCPVGGTTNPYGTSKYMVERIL
                     EDTVKAFPQLSAVVLRYFNPVGAHESGLIGEDPNGIPNNLMPFISQVAVGKLPQLSVF
                     GGDYNTHDGTGVRDYIHVVDLALGHLKALDKHQNDAGFHVYNLGTGTGYSVLDMVKAF
                     EAANGITIPYKVVDRRPGDIAVCYSAPQKALEQLGWETERGLEQMMKDTWNWQKNNPN
                     GYKG"
     gene            complement(8248..8409)
                     /locus_tag="PXC99_001839"
     CDS             complement(8248..8409)
                     /locus_tag="PXC99_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HDL5418272.1"
                     /translation="MNETLLNNLVCPVSNEKLEWDKENNRLINPKLNIAYPIKNGIPE
                     LLPEAGVAL"
     gene            complement(8387..9388)
                     /gene="lpxK"
                     /locus_tag="PXC99_001840"
     CDS             complement(8387..9388)
                     /gene="lpxK"
                     /locus_tag="PXC99_001840"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HDL5418273.1"
                     /translation="MKIWQTKSLITWLLSPLSLLFWLISQARKRLYSLNILQSYRSPL
                     PMLVVGNISVGGNGKTPVVVWLVEQLQQRGVKVGVISRGYGGKAKTFPQLVTRESSAE
                     MVGDEPVLIVQRTNVPLAISPNRQQSIELLLNQFEPDIIITDDGLQHYALQRDMEWVV
                     VDGVRRFGNGFVLPAGGLRELPSRLNSVQAVICNGGTPQANEHLMTLEPSDAINLVTN
                     QRKPLSEFTQPCVAIAGIGHPPRFFTMLEKLGIPLAKTQGFADHQAFDKAQLAQFADS
                     QTPLLMTEKDAVKCHDFAQPNWWYVPVSATFSEKSTACLLAPILQKLGKEDERNTTQ"
     gene            complement(9390..9794)
                     /locus_tag="PXC99_001841"
     CDS             complement(9390..9794)
                     /locus_tag="PXC99_001841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5418274.1"
                     /translation="MKVHEKIKLLRENNHWTQDEMAQKLSMTTKGYAKIERGETISNL
                     PKIEQIAEVFNMDICELLSYGEEGKIYINNTDNNLTNSFISLGNGVEEIQRLQLIISH
                     KDELLAHKEEIIENQKRELALLRDLVETLKNK"
BASE COUNT         2729 a         2124 c         2180 g         2894 t
ORIGIN      
        1 tcattttgca ttagttcagg cagagttaaa atattcaggt agcaatattc caagtgaata
       61 ttctaaattt aacttggaaa atgtgcttat tgattttcct aacaagacaa attctgtagc
      121 atatcagaat ctagttattc acaacgcaaa aacgcgtgca ggaaaattaa aaacacaata
      181 tgcaaatgct cacgatttag gcaatttggt tttagtagag gatatccaaa aaatattttc
      241 cgggttatta gaaataattt atcaagttcg ttgccatttg gtacatggta gcttaagtcc
      301 aacacctgaa aaccacgaag ttgttaaata ttgctatttg attttgtggg attgtttaaa
      361 aggattttgt gattagttat tgtcaataaa gctacaagcg gtcaattctc ccaaaacttt
      421 gcaaatttcc ccgcaaaact gaccgcttgt tctcctctat ccattcacct caaccaactt
      481 ttctctctac ccctactcaa aatcggttaa acaatctgtt gaggtaaatg ttgtgtcgga
      541 atgggattta atcttaatga aactgaaaaa atcttctgcc aagcaaattt ccctaaaatt
      601 ggaagttcat ttccaatttc tcaaaaaatc acccaaaccg gaactacact tccaattttt
      661 caatccccca catttccctt ttctcccaat ccatttcagc tttcacccca aaagccgttg
      721 caatattttc ggcatttaag accgcttgtg tgttgccgct gacgagtaaa ttgccgtttt
      781 taagcagaat gatttcatca caaaaacggt aggcaagggg caaatgatga atcaccacca
      841 cgcaggtttg tgttggagtt agggctttga gctgctgcat aatatcgatt tggtagtagg
      901 ggtcgagggc ggcaatcggt tcatcggcaa gcaagatcgg ggcttgtttc atcaaacaac
      961 gggcgagttg cactcgggtc tgttcaccgc cggagagctg ttggtaagtg ttgtccagca
     1021 ggtgagaaat cgccaattgt tcggcaaccg aacgcacctt ttgacgctct tgttcaggcg
     1081 gaagcggtgc gggcaagccg agtgcaatca catcatacac cgaaagttgc cacgccacgt
     1141 tgagctgttg ggcgaggtag gcaaattgtc ggctcctctc aacggcggaa agggcgtgca
     1201 gtttgcaatt ttccagccaa atttcaccgc ttgtcgggcg tagaatgccg gcaatcgctt
     1261 tgagcaacga ggatttccct gccccgtttg cgcccataat gccgatcaat ttgccttttg
     1321 gcagatagca agagaggtgt tgaataccgt gggcaagggt gagattttca atcttgatca
     1381 ttgtgccaat ctccattgct gggtgaataa aatccaaatc aaaaacggta cgcccaaaat
     1441 tgccgtgagc gtgccgatgt aaattcgggc aaaaaacggc acatattgca ccgccagatc
     1501 tgcaatcagc agtaacaacg ccccgattaa agcggaggta agataaagct gggacggcgg
     1561 ttttttcagc caaatacggg caagatgagg ggctatcaag ccgataaaac cgatggtgcc
     1621 ggtctgtgga atcgttgctc cgaccaacag cgccacgcca atgctaacgg taaaaaaact
     1681 gcgttgcagg ttgatgccca ttgttgctgc cgtctcttcg ccaaaggtga gcaggtcgag
     1741 ataacgccgt tcccgataga ggcagacaat gccgagcaag atcaacggta acgcccaaca
     1801 tactgcctct gcggttgccc agactaatga gccttgcaac cagcggtaga gttccgccaa
     1861 cgcccacggg ctttcggcat tggaaagcag taaagtcacc gctgccccga gcaacacgtt
     1921 taccgccacg ccacttaaaa tcatcattgt tgtgccgtgg cgaaagctaa tcagccacac
     1981 cagcaaaaat gcccccagcg cccctgccac accgccaaac agtagccagc ccatcggggc
     2041 tgaaaaatag tagagcagaa atacgctcac cgccgttgcc cccgaactgc tcccaagcaa
     2101 accggggctg gcaagcggat ttttaaacac gccctgcatc gcattgccgg caagcgcaag
     2161 gctggcgccc gtcagcaccg ccaagccaat acggggcagt cgaatttcac ccagcaccag
     2221 ccagcgcaga tcgcttagca cgccttccgc atttttaagc aaggcaaaat cgctcagttg
     2281 gtaaaaggct gcgttgctaa caatcagcaa caacaagctt ccaagcacaa tgtttaattt
     2341 cttcattctt ctttctctca tcaaacgtgc aaattatacc atagcgccaa agtcaagctg
     2401 aaaacgctat ttttgcgatc atcatcgaaa aactagcgtt tgccgaatgt aacccacgac
     2461 aggctttgct atattccttc aatcagccta agttttgtat ttaaaacatt acagattggg
     2521 ggtagaatgt accatattga acgcactgaa attttcgacc aatggcttga aaatttaaaa
     2581 gatccacttg ctgtggtgac cattgcaaga cgtattgaac gtgccgaaag cggaaatttt
     2641 ggcgatacca aatatatcgc agaaggaatt tccgaaatga ggctaaacgt cagcaaaggt
     2701 tatcgccttt actatgcgca aaaaggtagc attatttata tactactaaa tggcggacat
     2761 aaaggcacgc aacaagctga tattgataaa gctaaaatgc tatgggcaga aattaaacaa
     2821 catatggcag aacaggagaa aaagaatgaa cgaattatat gacgccccaa ttccacaagc
     2881 tactcgtgaa aaatttggca ttcaaccttt cgatgccgct gaatacctcg ccaatgacga
     2941 gctaatcgcc ctttatttgg cggaaacatt gaaagacggc acggacgagg agtttattca
     3001 agcattgaat accgtggcac gagcgaaagg aatgaatgag ttagcgaaaa aagcagggat
     3061 cgggcgtgaa agtttgtatc aaagcctttc cagcagtaag ccccgttttg agactatccg
     3121 caaaattatt agcgcattaa atttggagtt gtcggtcgtt aaggcgtaag tttgtgcatt
     3181 aattgtatcc cctgccaaac cccgtggtcg aaacagtagg tgtatttcat cggtaggaca
     3241 agcggtggat tttggctcat tttttgccat attttttgta atgctgggtg tttgagcagt
     3301 tcggcttggt tgttatagct ttggttatcg gtgaggaaca ataactgttt gggttgcgct
     3361 aacagcagtt tttctagcga gaaattctgt ggcgtgaggt cgctttttaa tggtgacaga
     3421 ccgagaagat ccaacaacgt ttgatattgc ggaaaatgcg gttcgatcat acccgtttcg
     3481 cttagaatta aagtttcagc aagcggttgt tttagcggaa ttttttgcaa acgtagccgt
     3541 tccaccagct tttccgcttt ggcttgattt tgggttagct cgcccagttg taaaatcagt
     3601 gtgaaaagct gttcgggtgt ttgcggactg tcgtttaatg cgactaactt aaagccaagc
     3661 tgtttcagcc gtgcggtgag ttgcggatag aaggtttcat tcagcaaaat ggtgctgtcg
     3721 gcatagggca acagggcggt gagttcaggc tcaacggtgg gcttgtccgt gttcagttta
     3781 tccaacatca tcaacggctt ttgggaatag ggcgacatcg cccgaatttg ctgtggttcg
     3841 gcaagttcca gcaacagacg gtcgctacac aaatttggcg ataaacggta agctcctgaa
     3901 atacgcccag tgatagaatt tttaaactgt gaattatcgg tgtaacggcc actaatagaa
     3961 aaactgtgat cttgttcggt aaataagcga tattctagtg ccgcactttt ttcggataag
     4021 gttttttcac gcaaatattt atcagaggta tagcgtgttt ttgcataatc tgtcagtaaa
     4081 ctgaccgctt gtgtcacttc tccttcacgg tcaaagttta catctaattg ataattcgca
     4141 ttaagttgtt tttcgttgct gtagcgagca tttgaaccga aatgtgttgc tttactattg
     4201 aattggctga tatttgcttg gtgtttcagc agctcttgtt catttcccca ataaccgcct
     4261 aatttaaaag tttgattgcg agtacgggaa tattcaccgc taacgtctga attatagcca
     4321 tcaatatgaa cggtttggga agattgagcg gcaagaactt ctaccccttt gttaccgagg
     4381 tcataaccta aacgtaaaga gccgttatca cgatgaaagc catctcgttc gcttgcacca
     4441 ccggttttca cttctgagcc tgtttctgtg gtatagctga aatggttttt actcagtgcg
     4501 gaaatgcctt tggtacgatg gctatcaccg tgtaaggcat agtagaaacc gttgtgaaat
     4561 ccggaaagtg ttgcgctggc atcacgggta ttatttgagc ctaaaccaag atcgacctcc
     4621 gcattgaatg gtttctcttt gtataaaccg cttttagtgg tgatataaac tacaccaccc
     4681 atagcactgc ttccccaaag ggcggattgc tcgccacgca acacttcgat acgttcgata
     4741 ttgctaatcg gtaagccacc aaaatcgaaa tttccaatat taatcggatt gacttttaca
     4801 ccgtcaatca caaccgcagt atggcgagat tctgcccctc gtaaaaataa gctagtaaga
     4861 gtaccacgcc caccttgttg cccaatcgcc acgcccggca cagtctttaa cacatcactc
     4921 acataagtcg cattgcgtgc ggcaaaatct ttttcggtaa gaaccgtcac gctggaagcg
     4981 gttttgtctt ggttgattgg ggttgcatag gcggaataga ctgttacgga atcaagctga
     5041 gtcatctcat tttgtgcaaa agctgtactt gctagtgcaa cagaaatggc gaatgctgtg
     5101 ggattctatt gatcgcctaa gtcctttaaa accgaaattt gtttcggtaa cttatggagc
     5161 aaattctggt gagcgagatc gtacacacag tattgtgaaa tcaatccaag aaaaaacagg
     5221 gatcatttca gctccgcact taacaggcat tgatgcaaca ccggaagaat taaaggtaat
     5281 tgccaaagat tattgggata gtggtattcg ccgaattgtt gctttgcgtg gcgatatacc
     5341 gaaaggttat gataaagcac tattttacgc ctcagattta gtcgctttat taaaatcagt
     5401 agcagatttc gatatttccg tggctgccta ccctgaagtt caccctgaag caaaatcagc
     5461 acaggcagat ttacttaact tgaaacgtaa aatcgatgcg ggtgcaaacc acgttattac
     5521 gcaattcttt tttgatgtag agagttattt acgttttcgt gatcgctgtg tttctattgg
     5581 gattgattgt gaaattgtgc cgggtattct gccggtgaca aatttcaagc agttgcaaaa
     5641 aatggcagca gtgactaatg ttaagatccc gacttggatg ggtaaaatgt acgaagggtt
     5701 agatgatgat caaaccacca gaaacttagt tgcagcaagt attgcaatgg atatggtgaa
     5761 agtgctttct cgtgaagggg tgaatgattt ccacttctat accttaaatc gtagtgaact
     5821 cacttatgca atgtgccata ctttaggcgt aagacctgat ttaacaactg cataatcgaa
     5881 cattaaggct gtatagctaa atgagctata cctccttata gttttacttc tcttcagcca
     5941 cccaaatctc gccatttttt aataataaat aggctttgtt ggaatcggct ttggtttgtt
     6001 taattccagc cggcagggcg gttggcaatt cagtgatctt gcctgtttta tccaacacaa
     6061 caacttgttg atagcccatt tggggtatca gtgcgaaagt ctctgttgtc gccactaaat
     6121 tggtttcgtg atcaccatag cggtgattgc ttaagccgga ggtaataaaa cgttcagcta
     6181 attggtttcc tttcaggctg tattcaacca aattgccttt tagatgtggc atttggattg
     6241 catagagctt gcggttaaag ataaacggcg attgccaacg gttagtcgac agcggctcac
     6301 tttcggcttc tattgataat tttccgtctt taacgccaat cacaacagtg ctggccccat
     6361 tgccatcgcc agagataaca gaaacgatct tggtttttcc attttctgtg aaagtcgccc
     6421 agcggttggc ttcaaatact cgcccttgtt gggtgagttt ttctgctaag gggtttaggg
     6481 tatggcgttc tagaaattga atttcgcctg cctctacatc atcgcctaat acaccgtgtt
     6541 gatatgtaaa atcatcaggc tttgcaagta cagcaatatg cccttggtta ggtgtttcgg
     6601 catcaaaatc aatttgcaga gggtgagcat caggcaacac ctcggtttct gcggtggcag
     6661 taatagtggc ttggtttcct tgcgtttcaa ttctggctaa cttaaattgt ccgttttgtt
     6721 tggtcacggc aatggtggca aaattaaggg cggtcattgt agctttcggg gcaaggggaa
     6781 tgttggaggt atagatttta tcagccgtcc acagcataaa atgcccgttt tgatccgcta
     6841 acgcaattcg ttggtattga gctttaggtt caatctcggt ggaaactcca tctgccagtt
     6901 tttgagcttg ttgtgtgact ctccataatt gtttttgttg gttaattacc actaattcgc
     6961 cttgttctga aaggtcaaat tggcttactt tgccaatttg gggaagtggg agtggagaaa
     7021 gctgaacatc agcaaacaaa gaagcggaga acaagcttaa gattaacaga atagattttt
     7081 tcattagcgt tacctaaaaa gaagatttaa atgataaagg gagatgttat ctccctttac
     7141 gctttagcct ttataaccat tcgggttatt tttttgccaa ttccaagtgt ctttcatcat
     7201 ttgttctagc ccacgctcgg tttcccaacc cagttgctct aacgcttttt gtggagcgga
     7261 gtagcaaacg gcaatatcgc ccgggcggcg atctaccact ttgtatggaa tagtaatgcc
     7321 atttgcggct tcaaaggctt ttaccatatc tagcaccgaa taacctgttc ctgtgcctaa
     7381 attgtaaacg tggaaaccgg catcattttg gtgcttgtct aaggctttta agtgaccaag
     7441 tgctaaatct accacgtgga tataatcacg cacacctgtg ccatcgtgag tattataatc
     7501 gccaccaaac accgataatt gaggtaattt gcccacagcc acttggctga taaacggcat
     7561 taagttattt gggataccgt ttggatcttc accgattaaa ccgctttcgt gagcccctac
     7621 cgggttgaag taacgcaata ctaccgcact taattgtggg aaggctttaa cggtatcttc
     7681 aagaatgcgt tcaaccatat atttggacgt accgtaaggg ttggttgtgc caccgacagg
     7741 gcaagattcc acaatcggga taatctgcgg atcaccataa acggtcgccg atgaactaaa
     7801 cacaatggta ttcacattgg cttttagcat ctcttctacc aatacaatcg agccggttac
     7861 attgttttga tagtaacgta gcggttctct gacgctttcg cctacagctt ttaaaccggc
     7921 aaagtgaatt accgattcaa tctgattttc cgcaaaaatt ttgcgtaaaa tatcacgatc
     7981 taaaatatcg ccttgataga attttacgct cttgccggtg atctgcttca cacgctcaag
     8041 tgatacttca gaggaattag aaagattatc taacaccacg atttcacgat tttcgtttaa
     8101 taattcaact aatgtatgtg aaccgatgta gcctgcacca cctgtaacta aaattgccat
     8161 tttatgttcc tctataaaat taatacgaac caaggttatt gttgctattt tacccgattt
     8221 aatcaggctt gctaatattt attcagttta taatgccact ccggcttccg gcagtaattc
     8281 cggaatgccg tttttaatcg ggtaagcaat attgagctta gggttaatta atcggttgtt
     8341 ctctttgtcc cattctaatt tttcattaga gacagggcag acgaggttat tgagtagtgt
     8401 ttcgttcatc ttcttttcct agtttttgta gaatcggggc taacaaacaa gcggtcgatt
     8461 tttctgaaaa tgttgcagaa accggtacat accaccaatt tggctgtgca aaatcgtggc
     8521 attttaccgc atctttctcg gtcattaata acggcgtttg gctatcagca aattgagcca
     8581 gctgagcctt atcaaaggct tgatgatcgg caaagccttg agttttggca agcggaatgc
     8641 ctaatttttc taacatcgta aaaaagcgtg gtgggtgacc gataccggca atcgccacac
     8701 agggttgggt aaattcgctt aatggcttgc gttgattggt gactaaatta attgcatcag
     8761 acggttcaag cgtcattaaa tgctcgttag cttgcggtgt gccgccgttg caaataaccg
     8821 cttgcacgga gtttaaacgg ctcggtaatt cacgcaatcc gcccgccggc agcacaaaac
     8881 cgttaccgaa acgccttacg ccatcaacca ccacccattc catatctcgc tgtagggcat
     8941 agtgttgcaa gccatcatcg gtgatgatga tgtccggctc aaactgattt aatagtaatt
     9001 caatgctttg ttggcggttt ggagaaatag ccaaaggcac attggttcgc tgaacaatca
     9061 gaaccggttc atcacccacc atttcagcag aactttctcg ggtaactaat tgcggaaacg
     9121 ttttcgcttt accgccatag cctcgagaaa tcacgcctac ttttacgcca cgctgttgca
     9181 gttgttccac cagccaaacg accactggcg ttttgccgtt gcctccaacc gagatattac
     9241 cgactaccag cataggcaaa ggcgaacggt acgattgcaa aatattcaga gaatataacc
     9301 gcttgcgagc ttgactaatc agccaaaaca gcaacgaaag cggcgaaagc agccaagtga
     9361 taagggattt tgtttgccag attttcatat tatttatttt taagtgtttc aactaaatct
     9421 cgtaataagg ctaattcacg tttttggttt tcgataattt cttctttatg ggctaataat
     9481 tcatctttgt gggagataat aagttgtaaa cgttgaattt cttctactcc atttcctaat
     9541 gagataaatg aattagtgag attattatct gtattattta tgtaaatttt tccttcttcc
     9601 ccataggata ataattcgca aatatccata ttaaatactt ctgcgatttg ttctattttc
     9661 ggtaaattag agatagtttc accacgttct atttttgcat aacctttggt tgtcatactt
     9721 aatttttgag ccatttcatc ttgtgtccaa tgattatttt ctcgcagtaa tttgattttt
     9781 tcgtgtactt tcatataaca cctatagatt gtgggagttg ggatataact tgatgtggta
     9841 aaggataaat tttgtggatt gtagcagttt attgagcaat ttagaataga gtaaatttta
     9901 tcttaagctc acaggagaag aaacatt
//
LOCUS       DANLVT010000088         9839 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.088, whole genome shotgun sequence.
ACCESSION   DANLVT010000088 DANLVT010000000
VERSION     DANLVT010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9839)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9839)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9839
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.088"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            381..1385
                     /locus_tag="PXC99_001842"
     CDS             381..1385
                     /locus_tag="PXC99_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDL5418275.1"
                     /translation="MPGDANKIISNGTSAGGALSTLLGASADHYDYEPYLKEAGALNA
                     SDKIFAVSAYCPITNLENADMAYEWQFNGVNEYSRIDMSRLNAAEFNDRSKPKPKPKI
                     EGSLNEAEIKVSNELAERFPTYLNSLHLVDEKGNPLTLDPKGNGSFKDYLSEVVKTAA
                     NKAYRGLVQDSEEQKAFQQISWLSFEKGKVSSVDWFGYVFSDKRMKSPPAFDALNGSS
                     GENNLFGTDTENNRHFTLYSAERSANKDLNLADPQIVKRMNPMHYLDNPNAAEHWRIR
                     VGTADRDTSLAISAILAIKLQMAGKNVNYETPWNVPHSGDYDVNELFLWADELVKGKK
                     "
     gene            1440..3290
                     /locus_tag="PXC99_001843"
     CDS             1440..3290
                     /locus_tag="PXC99_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDL5418276.1"
                     /translation="MQVKKFSQKYINWVLKLGRLKASLLGFFMVALSAILIQSSLTYL
                     FIGRVVVVDILRSIAFGLISAPFVLYFFTLLVEKLEISRLKLEKAVRDLEELREQDAY
                     LNAKLEKNSRDKSILMATISHELRTPLNGIIGLSQILLDDKTTEKQQEYLKTINMSAT
                     ALAHIFGDIIDLEKIDSSRIELVRKEVEFEQLIHDIANFGHFMAGNKQINFEVKYPPD
                     LPKYIYIDHARLSQILWNLISNAVKFTPASGRILLEIYQLDKEQFSFAVTDSGIGIPE
                     KDQRKIFDMFYQAENSKEKKAQGSGIGLSVSKRIAKLMGGDLVVASQENQGSTFTLTV
                     QAESTETKPIFAIQQHSLKVLLVEDIEMNVVVARAMLEKIGCVVDVAMSGEETFQHFA
                     QNSYDLILLDIQLPDTTGFEIAQQLRLQYENEEIDYLPLLVALTANVIQSRQEYQAQG
                     MDDVLHKPLSLDELMRCLNQHFGDDFLQKNEEKQPLVERGSENLPYSITILNELIGVM
                     GKENVLANMDLFADLMPTYLANLQRYLSDWQTTNSVESRKLTADEAHKIKGALASVGL
                     HQLQQTAQLAQSDNGEQWEQNIAHWVEMICSKWQMDLQLAKEYVRSKGDI"
     gene            complement(3386..3940)
                     /locus_tag="PXC99_001844"
     CDS             complement(3386..3940)
                     /locus_tag="PXC99_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HDL5418277.1"
                     /translation="MKSQIYYDYYPSPIGQLLLLATEEGLIYIELGQEQQTTSLDNFL
                     SAQAASGQILEIFCKTKEILDRYFAGEPLDFQQLDFLAPQGTPFQQSVWKILREIPYG
                     QTTTYGEIATQLGKPSAMRAVGGAVGRNPISILVPCHRVLGKNQALTGFGGGLPNKRF
                     LLQLEDITYKDKGIEFVKPKTKKW"
     gene            complement(4007..5488)
                     /locus_tag="PXC99_001845"
     CDS             complement(4007..5488)
                     /locus_tag="PXC99_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein transport protein"
                     /protein_id="HDL5418278.1"
                     /translation="MKMKNFSKTLIASLVAFSSAGASAAAFQLAEISTSGLGRAYAGN
                     AAVADNASVVATNPALMTLFKQTEISAGGIFVDADVNIDGKLNATGADASHKNVIPTA
                     IVPNAYIVSPINERLSIGGGVNVNYGLISEFDPNYSAGFLGGRTSLSAVNVNFSAAYD
                     LGYGFVLGAGLNAVHAKAELGRFLGAGAARFAPAKQFLEDKKVQVQSAIQGLKALEAG
                     IAAGNTALEAQKTQVLAQVNGLLKSQNLNQTITNSAQLERLVNGIQNTNASSTIHKLK
                     GDKWALGWNVGLVYNINERNRLGFTYHSEIDLKFKGKYSNTVPVVIPKMVDTITGGAE
                     IDGTLRLRLPAFWEVSGYHKLTDKLAAQYSYKRTDWSKFQSLEAYDMQGNRLLHKTEN
                     FNDSQRIALGLSYDVNEMLTLRTGVAFDESASVTHPSISIPDTDRAWYSVGATVRFTP
                     NLSADVGYSHLRGSNLTFSEDGLATFKSKARANLYGLNVNYKF"
     gene            5836..6288
                     /gene="iscR"
                     /locus_tag="PXC99_001846"
     CDS             5836..6288
                     /gene="iscR"
                     /locus_tag="PXC99_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly transcriptional regulator
                     IscR"
                     /protein_id="HDL5418279.1"
                     /translation="MKLTSKGRYAVTAILDIALHGKLEPVSLADISDRQAISLSYLEQ
                     LFAQLRRDGIVQSVRGPGGGYQLGKKPEEISVGMIISAVNENIDVTKCKGSGNCRKDS
                     QCLTHSLWERLEDQIEQFLGTISVADLAAEHADHDCEKEHCHDHPHHH"
     gene            6343..7563
                     /locus_tag="PXC99_001847"
     CDS             6343..7563
                     /locus_tag="PXC99_001847"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017459011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IscS subfamily cysteine desulfurase"
                     /protein_id="HDL5418280.1"
                     /translation="MKLPIYLDYAATTPMDERVAKKMMEYMTKDGIFGNPASRSHKFG
                     WEAEEAVDVARNQIADLIGADSREIVFTSGATESDNLAIKGAAHFYQTKGKHIITVKT
                     EHKAVLDTCRQLEREGFEVTYLDPEEDGILDLAKLKAAIRPDTILVSVMHVNNEMGVI
                     QPIKEIGAICRAKKIIFHVDATQSVGKIEVNVQDLNVDLMSFSSHKLYGPKGIGGLYV
                     CRKPRVRLEAIIHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMARLTVLRDR
                     LYNGFKDIEEVYVNGSMEEGKRIGSNLNISFNFVEGESLMMSLRDIAVSSGSACTSAS
                     LEPSYVLRAIGRDDELAHSSIRFTLGRWTTEEEIDHTIEIVKKAIVKLRELSPLWEMF
                     KEGVDLSKIEWNHH"
     gene            7690..8073
                     /gene="iscU"
                     /locus_tag="PXC99_001848"
     CDS             7690..8073
                     /gene="iscU"
                     /locus_tag="PXC99_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HDL5418281.1"
                     /translation="MAYSEKVIDHYENPRNVGTFDKEASDTGTGMVGAPACGDILRLQ
                     IKVNDQGIIEDARFKAYGCGSAIASSSLITEWVKGKSLEEAGAIKNSDIAEELELPPV
                     KVHCSILAEDAIKAAIADYKEKQAK"
     gene            8182..8505
                     /gene="iscA"
                     /locus_tag="PXC99_001849"
     CDS             8182..8505
                     /gene="iscA"
                     /locus_tag="PXC99_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HDL5418282.1"
                     /translation="MSITLTEAAANRVRTFLENRGKGIGLRLGVKTSGCSGLAYVLEF
                     VDVLNEDDQVFEQHGVKVIVDEKSLTYLNGTQLDFVKEGLNEGFKYTNPNVKNECGCG
                     ESFSV"
     gene            8515..9036
                     /gene="hscB"
                     /locus_tag="PXC99_001850"
     CDS             8515..9036
                     /gene="hscB"
                     /locus_tag="PXC99_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly co-chaperone HscB"
                     /protein_id="HDL5418283.1"
                     /translation="MNNPFTLFDLPVQFQLDNAQLSERYLALQKQLHPDNFAHKSSAE
                     QLEAVQKSADVNEALNILKDPILRAEAMIEIHTGEAKNLEEKSMRDVDFLMQQLEWHE
                     KLETIEHRKDETELTVFLKQIKAEQKAVLEQLEQTLNTADWQKANALTDKLRYFKKLI
                     IQIEKVEEKFFDY"
     gene            9090..9722
                     /locus_tag="PXC99_001851"
     CDS             9090..9722
                     /locus_tag="PXC99_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2625 family protein"
                     /protein_id="HDL5418284.1"
                     /translation="MKNLEQLLDKQSAWLILRDWFTQAKNHYEILASYPEDAGSALVG
                     MQLSTRSPLGAMVYETGGVFIDHGWLRILGSGNEKLPRGLFDWNFGKTFKQSGEQPSH
                     LLVADDAIGGYFAINAGGIGSDLGKVYYYHPKAKKWENTQLGYSEFLGWALAGDLNHF
                     YQDLRWENWQTDVEKLQGHQVLDLTSKIAVPIERHYQGEFAPENMGYSVA"
BASE COUNT         3132 a         1749 c         2109 g         2849 t
ORIGIN      
        1 atgcaaaaat gaaccaggca gacgcgatga gatgatcgac ttcatctttt gataaactct
       61 ttgcgattta aacagaaaat atatttagaa tgtaaacaaa catgagtcga ttttatgttc
      121 aaagagctgt aataagacgg aataatgtca gaccaagata gatactttca agtaaaatca
      181 agcataaaaa tgattttcag actttacaaa tctgaaagaa tgtgtaagat caggattgtc
      241 cgaaattcgg atggaaaatc ccagtggatg tattggctgg atacatcata ataactatgt
      301 atttgtgaat gttatttgaa tgattctacg tagttgattc aaaatcagca gtgcggtatc
      361 tgcatgctaa tgatgaaaaa atgccgggcg atgcaaataa aattatctct aacggcacca
      421 gtgccggagg agcattatct actttgttag gagcttcagc tgatcattac gactatgagc
      481 cttatttgaa agaggcgggg gcattgaatg ccagtgacaa aatttttgca gtttctgcct
      541 attgcccaat taccaacctt gaaaatgcgg atatggcgta tgaatggcaa tttaatggtg
      601 tcaatgaata tagccgaatc gatatgagtc gattaaatgc agcagagttt aacgaccgct
      661 caaaaccaaa accaaagccg aaaattgaag gctcgttaaa tgaggcggaa attaaagttt
      721 ctaatgaatt agcagaacgc tttccgactt atttgaacag tttgcatttg gttgatgaga
      781 aaggcaatcc tttaacactt gatccaaaag gcaacggctc gtttaaagat tatttatctg
      841 aagtggtaaa aacggctgca aataaagcct atagaggttt agttcaagat agcgaagagc
      901 aaaaagcctt tcaacaaatt agttggcttt catttgagaa aggcaaagtc agcagtgtgg
      961 actggtttgg ttatgtgttt tcagataaac ggatgaaatc accacctgca tttgatgcgt
     1021 taaatggaag ttcgggcgag aataatttat ttggcacaga cacggaaaat aaccgccatt
     1081 ttacgcttta tagtgcggaa cgttctgcca ataaagatct caatttagcc gatccgcaaa
     1141 tcgtgaaacg gatgaacccg atgcactatt tggataaccc aaatgctgcg gaacattggc
     1201 ggattagggt gggaacggca gatagagata cctcgctggc aatttctgca atcttagcaa
     1261 taaaactgca aatggcaggc aaaaatgtta attatgaaac cccgtggaat gtaccccatt
     1321 caggtgatta tgatgtaaat gaattattcc tatgggctga tgagctagtc aaaggcaaaa
     1381 agtaaaaaat agagtaaaat aaagcagatc tgatggtctg ctttttgttt tgaggtcgta
     1441 tgcaagttaa aaaatttagc caaaaatata ttaattgggt attaaagcta gggcggttaa
     1501 aagcttctct tttaggcttt tttatggtcg ctctttcggc aattttaatt caaagtagct
     1561 taacctatct ttttattggg cgagtagtcg tggtggatat tttacgctcc atcgcttttg
     1621 gtttaatttc tgcgcctttt gtgctttatt tcttcacgtt attggtggaa aaacttgaaa
     1681 tatctcgctt gaaattagaa aaagcagtaa gagatttgga agaactccgg gaacaagatg
     1741 cctatcttaa cgctaaatta gaaaaaaaca gccgtgataa aagcatttta atggcgacca
     1801 ttagtcacga acttcgtact ccccttaatg gaattatcgg cttgagccaa attttgttag
     1861 atgataaaac caccgaaaaa cagcaagaat atctaaaaac tatcaatatg agtgccactg
     1921 cattggctca tatttttggc gatattattg atttagaaaa aattgatagt agccgaattg
     1981 aattggtaag aaaagaggtg gaatttgaac aactcattca cgatattgct aattttgggc
     2041 attttatggc gggcaataag cagattaatt ttgaagtgaa gtatccgcct gatttgccga
     2101 agtatatcta tatcgaccac gcacgcttga gccaaatttt atggaatttg atcagcaatg
     2161 cggtgaaatt tacccctgca agcggtcgaa ttttgctgga aatttaccaa ttagataaag
     2221 aacagtttag ctttgcggtg acggattcag gcatcggtat tccggaaaaa gatcaacgca
     2281 aaatttttga tatgttctac caagcggaaa actctaaaga gaaaaaagcg caaggtagcg
     2341 ggattggctt atcggtctcg aaacgcattg cgaagctaat gggcggtgat ttggtggtgg
     2401 caagccaaga aaatcaaggc tcaactttta ccctcactgt gcaggcagaa agcacggaaa
     2461 ccaagccgat atttgctatt cagcaacatt cccttaaggt gctattggta gaagacattg
     2521 aaatgaatgt ggtggttgcc cgagcaatgt tggagaaaat cggttgcgtg gttgatgtag
     2581 caatgagtgg tgaagaaacg ttccaacatt ttgcacagaa cagctacgat ctgattttac
     2641 ttgatattca actgccggat accaccggtt ttgaaattgc acagcaatta agattgcaat
     2701 atgaaaacga ggaaattgac tatttaccgc tgttggttgc tttgacggca aatgtgatcc
     2761 aaagccggca ggagtaccaa gcacaaggta tggacgatgt gctacacaaa ccgctctctt
     2821 tagatgaatt aatgcgttgt ctcaaccaac attttggaga tgattttttg caaaaaaatg
     2881 aagaaaaaca gccgcttgta gagagaggtt ctgagaattt accttatagc attacaattc
     2941 ttaatgaatt gattggggta atggggaaag agaatgtgct tgccaatatg gatttatttg
     3001 ctgatttaat gcccacttat ttggcaaatt tacagcgtta tttaagtgat tggcaaacca
     3061 caaattctgt ggaaagccgt aaattaacgg cggacgaggc tcataagatt aagggagcat
     3121 tagcatcagt cggattacat cagctacaac aaactgctca gcttgctcaa tccgataacg
     3181 gcgagcagtg ggagcaaaat attgcacact gggtggaaat gatttgttcc aaatggcaga
     3241 tggatttgca attagctaag gaatatgtta gaagcaaggg ggacatttag taaatttgaa
     3301 atgttacgat ggtgcaagcg tccacgcttg taccaatttt aatatctgaa gcacaagcgt
     3361 ggacgcttgt gctatcaaaa cgtatttacc atttcttggt tttcggtttt acaaattcaa
     3421 tgcctttatc tttataggta atatcttcca gctgtaatag aaaacgctta ttcggcaagc
     3481 caccaccgaa tccggttaag gcttgatttt tccctaatac cctatggcaa ggcactaaaa
     3541 tcgaaatcgg gtttcgccca actgcaccgc cgacggctcg catcgcactt ggcttgccta
     3601 gttgggtggc aatttcgcca taagtagtag tttgcccgta agggatttca cgcaaaattt
     3661 tccaaactga ttgctggaat ggagtgcctt gcggggcaag aaaatccaac tgctgaaaat
     3721 ccaatggctc gccggcaaaa tagcggtcta aaatttcttt ggttttgcaa aaaatttcta
     3781 aaatctgacc acttgcagct tgagcggaaa ggaaattatc aagcgaggtg gtttgttgct
     3841 cttgccctag ctcaatgtaa atcaagcctt cttctgtggc taaaagcaat aattgcccga
     3901 tagggcttgg gtagtaatcg tagtaaattt gagatttcat gtttttatgc caataaaaaa
     3961 agaggtgtaa ttgattttac acctctttaa accttaattc atcaaattag aatttgtagt
     4021 ttacgtttaa accgtaaaga tttgcacgag ctttgctctt gaatgtggct aaaccgtctt
     4081 cagagaaggt caggttgcta ccacgaagat gtgagtaacc tacatcagca gataggtttg
     4141 gcgtgaaacg cacggttgca cctacagaat accaagcacg atcagtgtcc ggaattgaga
     4201 ttgatggatg agttacactt gcactttcat caaatgctac acctgtacgc aatgttagca
     4261 tttcattcac atcataagac aagcctaatg caatacgttg agagtcatta aagttctcgg
     4321 ttttgtgcaa taggcggtta ccttgcatat cataagcttc taggctttgg aatttgctcc
     4381 agtctgtgcg tttatagctg tattgtgcag caagtttatc ggttagtttg tggtaacctg
     4441 acacttccca gaatgccggt aggcgtaatc ttagtgtacc atcaatctct gcaccgccgg
     4501 taatggtatc taccatctta ggaataacta caggaacggt attagaatat ttgcctttaa
     4561 atttaagatc aatttcagag tggtaagtaa aacctaaacg gtttctttca ttgatattat
     4621 aaaccaagcc aacattccaa cccaatgccc atttatcgcc tttaagttta tgaattgttg
     4681 aacttgcatt ggtattttga atgccattaa ccaaacgttc taattgagca gaattcgtga
     4741 tggtttggtt taaattttga gattttaata aaccgtttac ttgagctaat acttgtgttt
     4801 tttgagcttc aagagcggta ttacctgctg cgatacctgc ctcaagagct tttaaacctt
     4861 gaattgcact ttgtacttgt actttcttgt cttccaaaaa ttgtttagct ggagcaaaac
     4921 gtgccgcacc ggcacctaag aaacgtccta attctgcttt tgcgtgtact gcattcaaac
     4981 ctgcccctaa tacaaaacca taacctaaat cataagccgc actaaaatta acattcacag
     5041 cacttaatga tgtacgacca cctaagaaac cagcagaata gttagggtca aattcagata
     5101 tcaaaccata atttacattt acgccaccac caatagaaag gcgctcattg ataggtgaaa
     5161 cgatataagc atttggaaca atagcggtag gaatgacatt tttatgtgag gcatctgcac
     5221 ctgtagcatt gagctttcca tcaatattta catcagcatc tacgaaaata ccaccggcag
     5281 aaatttcggt ttgtttaaat aacgtcatta acgcagggtt ggttgcaaca acagaagcgt
     5341 tatcggctac agcggcatta cctgcgtaag ctctacctaa accggatgtt gaaatttcag
     5401 ctaattggaa tgcggcagca gatgcaccgg ctgagctgaa tgctactaat gaagcgatta
     5461 aagttttgct aaagtttttc attttcatag gaaatctctt aaaaaatata tattttagaa
     5521 tgaataattc ataaaagtta taagaagaaa gtgcagattt tatgtgtcga agtactctct
     5581 atcaattaaa tttcaactgt tccgatcagt taggagcaaa taagagtgaa attgtgcggt
     5641 ctatgaactg tttatctttg gtattttggt attttcggct cttttttcgt ataatcagcg
     5701 ttattgtttt aatctgtttt aatatataaa accttttaca ctaattagtc ctaaatgatt
     5761 gactaaattg gtggggtata tcaaaattta gcaactgttt cagaagattt tctggataat
     5821 caatgaggat attttatgaa gcttacctca aaagggcgtt atgcagtaac cgccatttta
     5881 gatattgctt tacacggaaa actagagccg gttagcttag ccgatatttc agatcgccaa
     5941 gcgatttcac tgtcttattt agagcaactg tttgctcaac ttcgccgtga cggtatcgtg
     6001 cagagcgttc gtggaccggg tggtgggtat caattaggta aaaaaccgga agagattagc
     6061 gtgggtatga tcatctccgc cgtgaatgaa aatattgatg tcaccaaatg taaaggtagt
     6121 ggtaattgcc gtaaagattc tcagtgttta acgcattctt tgtgggagcg gttagaagat
     6181 caaattgagc agtttttagg gacaatttca gttgcggatt tagccgcaga acacgctgat
     6241 cacgattgtg aaaaagagca ttgtcacgat catcctcatc atcactaatt gcaaattttt
     6301 tatcaaaaat gaccgcttgg gttgttttaa ctaggagtaa caatgaaatt accaatttat
     6361 ttggattacg cagcaaccac accaatggac gaacgtgttg cgaaaaaaat gatggaatat
     6421 atgaccaaag acggtatctt tggtaaccct gcttctcgct cacacaaatt tggttgggaa
     6481 gcggaagaag cggttgatgt ggctcgtaac caaattgccg atttaatcgg tgcagacagc
     6541 cgtgaaatcg ttttcacttc tggtgcaaca gagtcggata acttagccat caaaggtgcg
     6601 gctcatttct atcaaaccaa aggtaaacac attatcactg ttaaaaccga acataaagca
     6661 gtattagata cttgccgtca gttagagcgt gaaggttttg aagtgactta cttagaccct
     6721 gaagaagacg gtattttaga tttagctaaa ttaaaagcgg ctattcgtcc ggacacaatt
     6781 ttagtttcgg taatgcacgt aaataacgaa atgggcgtaa tccaaccgat taaagagatc
     6841 ggtgcaatct gccgtgcgaa gaaaatcatt ttccacgttg atgcgaccca gtctgttggt
     6901 aaaatcgaag tgaatgtaca agacttaaat gttgatttaa tgtctttctc aagccacaaa
     6961 ttatacggac caaaaggtat cggcggtcta tatgtttgtc gtaaaccacg tgtgcgttta
     7021 gaagcaatta ttcacggtgg cggtcacgag cgtggtatgc gttcgggtac attgcctgtt
     7081 caccaaattg taggtatggg tgaagcatat cgtatcgcta aagaagaaat ggcaacggaa
     7141 atggctcgtt taaccgtgtt acgtgatcgt ttatataacg gctttaaaga tattgaagaa
     7201 gtatatgtaa acggttcaat ggaagaaggc aaacgtatcg gttcaaacct aaacatcagc
     7261 tttaactttg ttgagggcga atcgttaatg atgtcattac gtgatatcgc agtatcatca
     7321 ggttcagctt gtacttctgc aagtttagag ccatcttatg tgttacgtgc aatcggtcgt
     7381 gacgatgaat tagctcacag ctcaatccgt ttcactttag gtcgttggac gactgaagaa
     7441 gaaatcgatc atactattga aatcgtgaaa aaagctatcg tgaaattgcg tgagctttcg
     7501 cctctttggg aaatgttcaa agaaggtgta gatttgtcta aaatcgaatg gaatcaccac
     7561 taattcagaa aaattttgca agggcaaata atatttgccc ctacaaaata agctttcatc
     7621 acaaatagta aattgaatgt aggggcgaaa taggtttcgc cggaaatagg aaataaaagg
     7681 aatacaaaaa tggcatatag cgaaaaagta attgatcatt acgaaaaccc acgcaacgta
     7741 gggacttttg ataaagaagc atcagacacc ggtacaggta tggtgggagc accggcttgt
     7801 ggtgatattt tacgtttaca aattaaagtg aacgatcaag gtatcattga agatgcacgc
     7861 tttaaagcat acggttgtgg ttctgcaatc gcatcaagtt ctctcattac cgaatgggta
     7921 aaaggtaaat cattagagga agcaggtgcg attaaaaaca gtgatatcgc tgaagagtta
     7981 gaattaccac cggtaaaagt tcactgttca atcttagcag aagatgcaat caaagctgca
     8041 attgcagact acaaagagaa acaagctaag taatatgata caatcaatgc aagcggtcga
     8101 tttttgcaaa aaatttgcaa aatttaaccg cttgcatttg ctatttctat cttgatttaa
     8161 tccattcaca taaggaaaac tatgagcatt accttaacag aagctgccgc aaaccgagtt
     8221 cgtacattct tagaaaacag aggtaaaggt atcgggctaa ggcttggtgt gaaaacttcc
     8281 ggttgttcgg ggcttgccta tgtgcttgaa tttgttgatg tattaaatga agacgatcag
     8341 gttttcgaac aacacggcgt aaaagttatt gtcgatgaaa aaagcctgac ttacttaaac
     8401 ggtacgcagc tggattttgt gaaagaaggc ttaaacgaag gctttaaata caccaacccg
     8461 aatgttaaaa acgaatgcgg ctgtggcgaa agttttagtg tgtaaggaac tgtaatgaat
     8521 aaccctttta ctttatttga tttacccgtt caatttcaac ttgataacgc ccagctttct
     8581 gagcgttatc ttgctttaca gaaacagctt cacccagata actttgccca caaatcaagt
     8641 gctgaacagt tagaagcggt gcaaaaatct gctgatgtca atgaggcact caatattctt
     8701 aaagatccga ttttacgggc agaagcgatg attgaaatcc atacaggtga agccaaaaat
     8761 ctcgaagaaa aaagtatgcg agatgtggat ttcttaatgc agcaactcga atggcacgaa
     8821 aaactggaaa ccattgagca tcgtaaagac gaaaccgaac tgaccgtctt tttaaaacag
     8881 attaaagcgg aacaaaaagc agtattagaa cagcttgaac aaacgttaaa tacagccgac
     8941 tggcaaaaag ccaatgcgtt aaccgacaag ctccgttact ttaaaaaatt aattattcag
     9001 attgagaaag tagaagaaaa attctttgac tattaatcct acatttgtat ggttttcgca
     9061 agcggtcaaa ttctaaggaa attttgcaaa tgaaaaattt agaacaatta ttagataaac
     9121 aatcggcttg gttaatttta agagactggt ttacccaagc caaaaatcat tacgaaattt
     9181 tagcgagtta ccctgaagat gccggcagtg cattggttgg tatgcaactt tctactcgct
     9241 caccgctagg ggcaatggtg tatgaaaccg gtggcgtatt tattgaccac ggttggttac
     9301 gcattttagg ctcaggcaac gaaaaattgc ctcgaggctt atttgattgg aactttggca
     9361 aaacttttaa acaatctggc gaacaaccaa gccacttgct ggtagcggat gatgcaatcg
     9421 gtggctattt tgccattaat gccggcggaa tcggctcaga tcttggcaaa gtttattatt
     9481 atcatccaaa agctaaaaaa tgggaaaaca cccaattagg ttattcagaa tttctaggct
     9541 gggcattagc cggagattta aaccattttt atcaggattt gcgttgggaa aactggcaaa
     9601 ccgatgtaga gaaattacaa gggcatcaag tgctggatct tacaagtaaa atcgccgttc
     9661 cgattgaacg ccactaccaa ggcgaatttg cccctgaaaa tatgggatat tcggtggctt
     9721 aagtgtttgt aagagaggct gaaatatagg ctgtttagct tattttttta gaacgaaaga
     9781 aattttctga ttttcgattt agatcacaaa aatcgctcaa attatatttt ttattcctt
//
LOCUS       DANLVT010000089         9835 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.089, whole genome shotgun sequence.
ACCESSION   DANLVT010000089 DANLVT010000000
VERSION     DANLVT010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9835)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9835)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9835
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.089"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(115..1830)
                     /gene="proS"
                     /locus_tag="PXC99_001852"
     CDS             complement(115..1830)
                     /gene="proS"
                     /locus_tag="PXC99_001852"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HDL5418285.1"
                     /translation="MRTSQYLFSTLKEMPNDAQVVSHQLMLRAGMIRPMASGLYNWLP
                     TGIKVLKKVENIIREEMNKGGAIEVLMPVVQPAELWEESGRWNDYGPELLRFKDRGER
                     DFVLGPTHEEVITDLVRREVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDA
                     YSFHTTQESLQETYDVMYQVYSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGE
                     DDVVFSTESDFAANIELAEAVAVGERQAPTAEMQLVDTPNAKTINELVENHGLAIEKT
                     VKTLVVKGATEEQPLIALVIRGDHELNEIKAQKHPLVADPLEFADEAEIKAKIGAGVG
                     SLGVVNMPIPVIIDRSVALMSDFGCGANIDGKHYFNVNWERDVAVPEIADLRNVVEGD
                     PSPDGKGTLQIKRGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYGIGVTRVV
                     AAAIEQHYDDRGIIWPCDEMAPFTVAIVPMNMHKSEKVQAFAEELYANLKAQGVEVIF
                     DDRKERPGVMFADMELIGVPHMVVIGEKNLENGEIEYKNRRSGEKQMIAKESLLAFLK
                     ANVKA"
     gene            complement(1994..2155)
                     /locus_tag="PXC99_001853"
     CDS             complement(1994..2155)
                     /locus_tag="PXC99_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418286.1"
                     /translation="MEQKLNNVFGGIMFKEKDYDEYLEAKVKKGQIFTLEQANAEWQE
                     IIEQIEREN"
     gene            complement(2208..4091)
                     /gene="htpG"
                     /locus_tag="PXC99_001854"
     CDS             complement(2208..4091)
                     /gene="htpG"
                     /locus_tag="PXC99_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HDL5418287.1"
                     /translation="MANNQETRGFQSEVKQLLQLMIHSLYSNKEIFLRELISNASDAA
                     DKLRFKALSEPALYEGDGELRVRVSVDETLGTITIADNGIGMTREQVIDHLGTIAKSG
                     TKEFLNALGTDQAKDSQLIGQFGVGFYSSFIVADKVTVKTRAAGVPAEQGVIWESAGE
                     GDYTVADLEKKERGTEIILHLREDEKEFLNEWRLREIIGKYSDHIGLAVEIQTNEYDD
                     EGKASGQKWEKINKAQALWTRSKNEISDEEYTEFYKHLSHDFADPLIWSHNKVEGKQE
                     YTSLLYVPSKAPWDLFQREQKHGLKLYVQRVFIMDDAEVFMPNYLRFMRGLLDTNDLP
                     LNVSREILQENKVTQSLRSALTKRALQLLEKLAKDDAEKYAQFWQAFGVVLKEGVGED
                     FANKQQVAGLLRFASTQRDDSEQAVSFADYIARMKEGQKAIYFLTADSYQAAKNSPHL
                     ELFHKKGIEVLLLSDRIDEWLVSHLTEFDGKPLQSITKSDLDLGELADKQEEESQKAQ
                     QAEFGSFLERAKGYFGERVKNVVLTHRLTDTPAVVSTDSDEMTTQMAKLFAAMGQQAP
                     EVKYTFELNPDHPMVKKVADLADEAEFADWIELLFEQALLAERGTLENPTAFIKRVNK
                     LLG"
     gene            4255..4542
                     /locus_tag="PXC99_001855"
     CDS             4255..4542
                     /locus_tag="PXC99_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HDL5418288.1"
                     /translation="MAITITSREFNQNASKVLKMAEKEPVFITKWGKIVNVVSSYMDY
                     QQKKPSEPSFEELFASSENEDVSDEFWQEFEQTLVEIRKSNKPRPVDFGDE"
     gene            4542..4970
                     /locus_tag="PXC99_001856"
     CDS             4542..4970
                     /locus_tag="PXC99_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HDL5418289.1"
                     /translation="MYRYLFDTNIVSELYKLRNDKMDVNVRQWLRGVNPSQTNISCIT
                     LSEIKTGILLKARKDKEQSDRLNDWFENNVLKAYQTKAFVVNNDIALLASEYHIPNKM
                     DLNDAYIAATAKYHNLILVTRNTKDFIRCDVRLFNPFETA"
     gene            4974..7055
                     /gene="recG"
                     /locus_tag="PXC99_001857"
     CDS             4974..7055
                     /gene="recG"
                     /locus_tag="PXC99_001857"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HDL5418290.1"
                     /translation="MSEQLLDGVPLTALSGVGAAISEKLSRIGINNVQDLLFHLPMRY
                     EDRTRITPIADVRPESFATIEGYVQLTEVQFGKRPILSVTLSDSTSKIMLKFFNFNAG
                     MKNSLATGVRVKAFGEIKRGRFMAEIHHPEYQIIRDNQPLVLAETLTPIYSTTEGLKQ
                     ASLRKLTEQALALLEKVKVAELLPDEYNPHKYSLKEALQLLHRPPPTISAEVLEKGDH
                     PAQKRLIFEELLAHNLAMQQLRLGVKQQYAEALTYQTDIKQRFLDSLPFKPTHAQSRV
                     TADIEQDLAKPHPMMRLVQGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHA
                     NNFANWLNPFGIEVGWLAGKVKGKARTAQLEAIKNGDVQMIIGTHALFQDNVEFHHLA
                     LVIIDEQHRFGVHQRLTLREKGAKENNYPHQLIMTATPIPRTLAMTVYADLDTSIIDE
                     LPPGRTPITTVVISEDRRAEIVQRVYQVCKQEHRQAYWVCTLIDESEVLEAQAAAAIA
                     EDLQRALPDLRIGLVHGRLKPQEKQAIMAEFKAANLDLLVATTVIEVGVDVPNASLMI
                     IENSERLGLAQLHQLRGRVGRGATASHCVLMYKPPLGKISSKRLQVMRDSQDGFYIAE
                     KDLEIRGTGEILGTKQTGMAEFKVADLMRDRKMIPLVQRYAKQIISENQPLAEALIKR
                     WLDNKAEYTNA"
     gene            complement(7077..8011)
                     /locus_tag="PXC99_001858"
                     /pseudo
     CDS             complement(7077..8011)
                     /locus_tag="PXC99_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250489.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
     gene            complement(8064..9716)
                     /locus_tag="PXC99_001859"
     CDS             complement(8064..9716)
                     /locus_tag="PXC99_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HDL5418291.1"
                     /translation="MTIFQVAQNWLAQDPDAETRAELEQLIQAAESDEKAKAELTARF
                     DGRLQFGTAGLRGRLQAGSMGMNRVLVAQAASGLAGFIKGYDKEPSIVIGYDGRKNSD
                     VFARDTAEIMAAAGIKTYLLPRKLPTPVLAYAIQYFDTTAGVMVTASHNPPEDNGYKV
                     YLGKANGGGQIVSPADKEIAALIDKVAAGDIRDLPRSQDFTVLDDEVVNAYIEKTASL
                     AKRPKAEINYVYTAMHGVGYEVLSKTLEKAGLPQPYLVSEQIQPDGSFPTVNFPNPEE
                     KGALDLAIKLAKEKNAEFIIANDPDADRLAVAVPDAQGNWKPLHGNVIGCFLGWYLAK
                     QFHAQGKQGVLACSLVSSPALAEIAKKYGLSSEETLTGFKYIGKVENLLFGFEEALGY
                     LVDPDKVRDKDGISAAIMFLDLVCSLKQEGKTLADYTTEFVQEFGAYVSGQISIRVCD
                     LAEIGKLMTALRNNPPSEIGGFKVAEFIDHTKTTRQNDILVFVLENGSRLIARPSGTE
                     PKIKFYLDARGTDAENAEQVLAQFDESVRSLLRQEEYGKQDC"
BASE COUNT         2645 a         2360 c         2071 g         2759 t
ORIGIN      
        1 cacgcattct atttcctata ttctaaaaat aatagagtat tttatacttt agttaaatac
       61 tcgctgcttt atattaaagg gcgtatttta tacgcccaat tttgttattt ataattaagc
      121 ctttacattc gcttttaaga acgcaagtaa gctctctttg gcgatcatct gtttttcacc
      181 gctgcggcgg tttttgtatt cgatttcgcc gttctcgagg tttttctcac caataaccac
      241 catatgcggc acaccgataa gctccatatc cgcgaacatc acgcccgggc gttctttacg
      301 atcatcaaaa atcacctcaa cgccttgagc ttttaagtta gcgtataact cttcagcgaa
      361 tgcctgcact ttttccgatt tgtgcatatt catcggcaca atcgccaccg taaatggcgc
      421 catttcatca caaggccaga taataccacg atcatcataa tgttgttcaa tcgcagctgc
      481 caccacacgg gtaacgccga taccgtaaca acccattgtc atcactagcg gtttaccgtc
      541 ttcaccttgc acagtggctt tcattgcttc tgagtatttt ttgcctaatt ggaaaatatg
      601 ccctacttca atacctcgtt tgatttgaag tgtgccttta ccgtccgggc ttgggtcgcc
      661 ttccaccaca ttgcgtaaat ctgcaatttc cggcacagca acatcacgct cccagttcac
      721 gttaaagtag tgtttgccat caatattcgc accgcagcca aaatctgaca tcaacgccac
      781 tgagcggtca ataatcaccg gaatcggcat attcaccaca cctaacgagc caacaccggc
      841 accgattttg gctttaattt ccgcttcatc ggcaaactca agcggatcag ccaccaacgg
      901 gtgtttttga gctttaattt cgtttaactc gtggtcgcca cgaatcacta acgcaattaa
      961 cggttgctct tcagttgccc ctttcaccac taaggttttc accgtttttt caatggctaa
     1021 accgtgattt tctactaatt cattgatggt tttcgcattt ggcgtatcca ctaattgcat
     1081 ttctgccgtt ggtgcttggc gttcacccac cgcaaccgct tcggctaatt caatattggc
     1141 agcaaaatct gattcggttg aaaataccac atcatcttca ccgcttgagg ctaacacttg
     1201 gaactcgtga gaggctgaac cgccgataga gccggtatct gcctgcaccg cacggaaatc
     1261 taagcccaaa cgggtgaaaa tattgctgta aacctgatac atcacatcat aggtttcttg
     1321 caggctctct tgtgtggtgt ggaaagaata ggcatctttc atcacaaatt cacgcgaacg
     1381 cattaccccg aaacgagggc ggacttcatc acggaatttc gtttgaattt ggtataaatt
     1441 cagcggaagt tgtttgtacg aagaaacttc acggcgaacc aagtcggtaa tcacttcttc
     1501 gtgagtcggg ccaagcacga aatcacgctc gccacgatct ttaaaacgta ataattccgg
     1561 gccgtaatca ttccaacgac cggattcctc ccataattcc gccggctgaa ccaccggcat
     1621 taatacctcg atagccccgc ctttgttcat ctcttcacga ataatatttt ccactttttt
     1681 caacactttg atcccggtcg gcaaccagtt gtataaacct gacgccatcg ggcgaatcat
     1741 tccggcacgc aacattaatt gatggctaac tacttgtgca tcattcggca tttctttaag
     1801 ggttgaaaat aaatattgac ttgtacgcat tgctattcct attcttttta aactttgaaa
     1861 cctgaaaaaa tctgcttatt ttaaaacaaa gcggttaaat tttcaggaaa ttttgcaaaa
     1921 tcctataaaa aaataaccgc ttgtaagcgg ttattttgtt ttaactaagg gtattttctt
     1981 aaactgtgta tgcttaattt tctcgttcaa tttgctcaat aatctcttgc cattcggcat
     2041 ttgcttgttc aagagtaaaa atctgacctt tttttacttt agcctctaaa tattcatcat
     2101 aatctttttc tttaaacatt attcccccga atacattgtt taatttttgt tccattatat
     2161 attgaatatg gaaaaacgga aacctagatt tccgttttta gtaatggcta gcccaacaat
     2221 ttatttaccc gtttaataaa ggctgtcggg ttttccaacg tgcctcgttc agcaagcaga
     2281 gcttgttcaa acagcagttc aatccaatcg gcgaactcgg cttcatcggc aagatcagct
     2341 acttttttca ccattgggtg atctgggttc agctcaaaag tatatttcac ttctggtgct
     2401 tgttgcccca ttgctgcaaa cagttttgcc atttgggtgg tcatttcatc gctgtcagtg
     2461 gaaaccactg ccggtgtgtc ggttaagcgg tgagtcagca ccacgttttt gacccgttca
     2521 ccaaagtagc ctttcgcccg ttctaagaac gaaccaaact ccgcctgttg ggctttttgg
     2581 ctctcttctt cctgcttgtc ggcaagctcg cctaagtcta agtccgactt ggtaatgctt
     2641 tgtagcggtt tgccgtcaaa ctcggtgagg tggctaacca accattcatc aatgcggtca
     2701 gaaagcagta gcacctcaat gccttttttg tggaacagct ctaagtgcgg gctgttttta
     2761 gccgcttggt agctgtctgc ggttaagaag tagatcgctt tctgcccctc tttcattctt
     2821 gcaatataat cggcaaaact gaccgcttgt tcgctgtcat cacgctgggt ggaggcaaaa
     2881 cggagtaagc ctgcaacctg ttgtttgttg gcaaagtctt cgcccacgcc ctctttaagc
     2941 accacgccga acgcttgcca gaattgggca tatttttcgg catcgtcttt cgccaatttt
     3001 tccagcagtt gtaacgcacg cttggttaag gcagaacgga gcgattgggt aactttattc
     3061 tcttgcagaa tttcacggct gacgttgagc ggcaggtcgt tggtgtcgag caagccacgc
     3121 ataaaacgca agtagttcgg cataaagact tccgcatcgt ccataataaa tacacgctga
     3181 acgtagagtt tcaagccgtg tttttgctcg cgttggaaca gatcccacgg ggctttgctc
     3241 ggcacataca gcaagctggt gtattcttgc ttaccttcga ctttattgtg cgaccaaatc
     3301 agcgggtcgg caaaatcatg gctgaggtgt ttgtaaaatt cggtgtactc ctcgtcacta
     3361 atctcatttt ttgagcgtgt ccaaagcgct tgagctttgt taattttttc ccatttttga
     3421 ccgcttgctt tgccctcgtc atcgtattca ttggtctgaa tttccaccgc caggccgata
     3481 tggtcggagt atttgccgat aatctcacgc aaacgccatt cgtttaaaaa ctctttttcg
     3541 tcctcacgca agtgaagaat gatttccgtg ccacgctctt ttttctccag atcggcaacg
     3601 gtgtaatcgc cctcaccggc agattcccaa atcacgcctt gctcggcagg cactccggcg
     3661 gcacgggttt tgactgtcac tttatccgcc acgatgaaag aagagtaaaa gcccacgccg
     3721 aactgcccga taagctggct gtctttggct tgatcagtgc cgagtgcgtt caaaaattct
     3781 ttggtaccag attttgcaat cgtaccgaga tggtcgatca cctgctcacg ggtcataccg
     3841 ataccgttat cggcaatcgt aatcgtaccg agtgtttcat caacagagac acgcacacgc
     3901 agttcgccat caccttcata caaagccggc tcggaaaggg ctttaaaccg caatttatcg
     3961 gcggcgtcag aggcgttgga aataagctca cgcaggaaaa tttctttgtt ggagtaaagc
     4021 gagtggatca tcagttgcaa taactgtttc acttccgact ggaagccacg ggtttcttga
     4081 ttatttgcca ttgtgtattc ctttattcat taaaaaacag ggaatagatg gggcaagtgg
     4141 tcagattttc aagatttttt gcaaaatatc tgttgccaaa tagcgaatta attgaaagat
     4201 attactacat ttaataaaat acactcatct ttttactaca ttttggagag cgatatggca
     4261 ataaccatta cttccagaga atttaatcaa aatgccagca aagtgttaaa aatggcagaa
     4321 aaagagccgg tttttattac caaatggggc aaaatcgtca atgtggtgtc tagttatatg
     4381 gattatcagc agaaaaagcc tagcgagcca agctttgaag agctattcgc ctcttccgaa
     4441 aatgaggatg tgagcgatga attttggcaa gagtttgaac aaacattggt tgaaatccgc
     4501 aaaagcaata aaccaagacc tgttgatttt ggagatgagt aatgtatcgc tacctttttg
     4561 ataccaatat agtttccgag ctttataagt taagaaatga caagatggat gtcaatgttc
     4621 gccagtggct gagaggggtt aatcctagcc agaccaatat cagctgtatt acgttatctg
     4681 aaatcaaaac aggtattttg ctgaaagccc gcaaagacaa agaacaatca gaccgattaa
     4741 atgattggtt tgaaaataat gtattaaagg cttatcaaac aaaagcgttt gtggtgaata
     4801 acgacattgc tctattggca tcagagtacc atattcccaa taaaatggat ttaaatgatg
     4861 cttatattgc ggcaaccgcc aaataccaca atctgatttt agtcacccgc aacaccaaag
     4921 attttatccg ttgtgatgtg cgtttattta acccatttga aaccgcataa ataatgagtg
     4981 aacaattatt agacggcgtg ccattaaccg ccctttccgg cgtaggagcg gcaatttccg
     5041 aaaagttaag tcgaatcggc attaataatg tgcaggattt actgtttcat ctgccaatgc
     5101 ggtatgaaga tcgcacccgt attaccccga ttgctgatgt tcgcccggaa agctttgcca
     5161 ccattgaagg ctatgtacaa cttaccgaag tccagtttgg taaacgcccg attttatcgg
     5221 ttacactctc cgacagcacc agcaaaatta tgcttaaatt cttcaatttc aatgctggaa
     5281 tgaaaaatag ccttgccacc ggcgttcggg taaaagcctt tggggaaatt aagcgtgggc
     5341 gatttatggc ggaaattcac caccctgaat atcaaattat tcgggataat caaccgcttg
     5401 tactggctga aaccctgacc ccgatttact ccaccactga ggggttaaaa caagcctcgc
     5461 tgcggaaatt aaccgagcaa gccctcgctt tattagagaa agtgaaagtc gccgagctgt
     5521 tgcctgatga atacaatccg cacaaataca gcctaaaaga agcgttgcag ttattgcacc
     5581 gcccaccgcc gacgatttct gccgaagtct tggaaaaagg tgaccaccct gctcaaaaac
     5641 ggctgatttt tgaagaactg ctggcacaca atttagcgat gcagcaactc cgtttagggg
     5701 taaaacagca atatgcagag gcacttactt accaaaccga tataaaacag cgttttctcg
     5761 acagtttgcc ttttaagcct actcacgcac aaagccgagt aaccgcagat attgagcaag
     5821 atcttgccaa accacacccg atgatgcgac tggtacaagg cgatgttggt tcaggtaaaa
     5881 ccttagtagc cgccttggca gcactattag cgattgataa cggcaagcag gtggcattaa
     5941 tggcaccgac cgaaattctt gccgaacagc acgccaataa ttttgccaac tggcttaatc
     6001 cctttgggat tgaggttggc tggcttgccg gtaaagtgaa aggcaaggcg agaaccgcac
     6061 aacttgaggc aatcaaaaac ggtgatgtgc agatgattat cggcactcac gccctgttcc
     6121 aagacaatgt ggaatttcac catttagcgt tggtgattat tgatgaacaa caccgttttg
     6181 gcgtacacca acggctgacc ttgcgggaaa aaggagcgaa agaaaataac tatccgcatc
     6241 agctcattat gacggcgacc cccattccga gaacgctggc aatgacggtc tatgctgacc
     6301 tcgacacctc aatcattgac gaactgccac cgggtagaac gccaatcacg actgtggtga
     6361 tttctgaaga tcggcgagca gaaatcgtcc aacgggtgta ccaagtctgt aagcaagaac
     6421 accgccaagc ctattgggtc tgcaccctga ttgatgaaag cgaagtgttg gaggctcaag
     6481 ccgcggcagc gattgccgaa gatttacagc gagccttgcc ggatttacgc atcgggttag
     6541 tacacggacg gctgaaacca caggaaaaac aagcgattat ggcggaattt aaggcagcga
     6601 atttagattt gctggttgcg accaccgtaa ttgaagtggg agtggacgtg ccgaatgcta
     6661 gcctaatgat tatcgaaaat tccgaacgac tcgggctggc tcaactccac cagttgcgtg
     6721 gacgtgttgg gcgaggggca accgcctcgc attgcgtctt aatgtacaaa ccgccgctcg
     6781 ggaaaatttc cagcaagcgg ttacaagtga tgcgtgatag ccaagacggt ttctacattg
     6841 ccgaaaaaga tttggagatt cgaggcacag gcgaaattct cggcacaaaa cagaccggaa
     6901 tggcagaatt taaggtggcg gatttaatgc gagaccgcaa aatgattccg ctggtgcaac
     6961 gttacgccaa gcaaattatt agcgaaaatc aaccgcttgc agaggcgtta attaagcgtt
     7021 ggttagacaa caaggcggaa tataccaacg cttaaccggc aagcgggtta tttagattac
     7081 ggcaggtttt tcaccgattc aattaccaaa tcccaaaagc gggatttgtc taattttttt
     7141 gctacccaag tattacactg ttttggcggg tagcggaaat ccgccaccgt catacccagt
     7201 gtatgcgtgc ctgttagctc aatattgacc ggcacttgct gaacttcaat caggcttggg
     7261 tcaatcacat acgccaccgc acaggcatcg tgaaccggtg gagcatcaaa gccttgagcc
     7321 tgtttataca ttttggcgaa gaacgccagc aattccacca caaactgccc cgatttgctg
     7381 tttaatgcct taaagcgttc aaccacatcg ggggtcgcaa gtgcttggtg agttaagtct
     7441 aagccgacca tcgtcacctt ccaaccggca ttaaacacaa tatgagcagc ttccgggtca
     7501 attttaatat taaattctgc caccgcactc cagttgccgg tgtgataacc tccgcccatc
     7561 agcaccactt ctttcactct ttcaataata cggggctcaa ggcgggcagc tagagcaata
     7621 ttggttattg cccaccggtc ggcactaagg taatgctttt ctccgggtgc gacattatca
     7681 aatcaataat taattgagcg gcgtgttttt tctcaaattg tcgggtagat tcagggagta
     7741 caggcccatc cattcccgaa tcaccgtgaa tatccggggc attttccact tcacgcacca
     7801 gcggtctggc acaacctttg gcaaaaggaa cgttgcaaat atgagcaatt tccgcaaccg
     7861 ccaacgcatt acgcgatact ttttctaagg tttgattacc taccaccgta gtcactgcca
     7921 acaaatcaat attcggattc ccccaagcga gcatcatcgc aatcgcatcg tcatgccccg
     7981 gatcacaatc taaaataatt ttttgagcca ttattgtctc ctttaaaaaa gggagagcct
     8041 aagctccccc tcaattaatg ccattagcaa tcttgtttgc cgtattcttc ttggcgaagc
     8101 agcgaacgca cactttcgtc aaactgagcc agcacttgct ctgcgttttc agcgtctgtg
     8161 ccacgagcat ctaaatagaa tttaattttc ggctcagtac ctgaagggcg agcaatcaaa
     8221 cggctgccat tttccaacac aaacactaaa atgtcatttt ggcgtgtggt tttggtatgg
     8281 tcaataaact cagccacttt aaagccacca atttcgcttg gaggattgtt gcgtaacgcc
     8341 gtcattaatt tgccgatttc ggctaaatca caaactctga tcgaaatttg accgcttaca
     8401 taagccccga actcttgtac aaactcggtg gtgtaatccg caagggtttt accttcttgt
     8461 ttgaggctgc acactaaatc taagaacata atggcagcgg aaatgccgtc tttatcacgc
     8521 actttgtctg ggtcaaccaa ataacctaag gcttcttcaa agccaaataa taggttttca
     8581 acttttccga tatatttaaa gccggttaag gtttcttccg agcttaaacc atattttttc
     8641 gcaatttcag ctaacgccgg agaggatact aacgagcaag ccaacacgcc ttgtttacct
     8701 tgtgcgtgga attgtttggc taaataccag cctaagaaac agccgatcac attgccatgc
     8761 agtggtttcc agttgccttg agcatcaggc acggctaccg ctaaacggtc agcatccggg
     8821 tcgttggcga taataaattc ggcatttttc tctttcgcca atttaatcgc taaatctaac
     8881 gcccctttct cttccgggtt cgggaaatta accgttggga acgaaccgtc cggctgaatc
     8941 tgctcactaa ctaaatacgg ttgcggtaag ccggcttttt ctaatgtttt gcttaacact
     9001 tcatagccca caccgtgcat tgcagtgtaa acgtagttta tttcggcttt tggccgtttg
     9061 gctagtgagg cggttttctc aatataagca tttaccactt catcgtctaa caccgtgaaa
     9121 tcttggctac gaggtaaatc acgaatatcg cctgctgcta ctttatcaat cagagcagca
     9181 atttctttat ctgccggcga aacaatttgt ccgccaccgt tggctttacc taaataaact
     9241 ttatagccgt tatcttccgg tgggttgtgg ctggcagtta ccatcacacc ggctgtggta
     9301 tcaaaatatt gaatcgcata ggcaagcact ggtgttggca atttgcgagg aagcaggtac
     9361 gttttaatgc ctgccgctgc cataatttca gcggtgtcac gggcaaacac atcggaattt
     9421 ttacgaccgt cataaccaat aacaattgac ggctctttat cataaccttt aataaaccca
     9481 gctaaaccgc tggcagcttg tgccaccaaa acacggttca tacccattga acccgcttgt
     9541 aagcgaccac gcaaaccagc cgtaccaaac tgtaaacgtc cgtcaaaacg ggctgttaat
     9601 tctgcttttg ctttctcgtc cgattctgcc gcttgaatta actgctctaa ttccgcacgg
     9661 gtctctgcat ccgggtcttg ggctaaccaa ttttgtgcaa cttggaaaat agtcattttt
     9721 tactcctatg taatttaaaa actctgttta gattagccca aagtcctttt atttaaaagg
     9781 agatatttct ttttttgtga tcgagctatc aaataaaaag atttgtcaga aataa
//
LOCUS       DANLVT010000090         9820 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.090, whole genome shotgun sequence.
ACCESSION   DANLVT010000090 DANLVT010000000
VERSION     DANLVT010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9820)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9820)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9820
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.090"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            89..310
                     /locus_tag="PXC99_001860"
     CDS             89..310
                     /locus_tag="PXC99_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4224 domain-containing protein"
                     /protein_id="HDL5418292.1"
                     /translation="MNIYTDFLSREEIEFITQCKQKNLIKKQLNIMGIPFKENANGFP
                     VVRRDYAQAKQRKPIATNDSDWVSNAFKA"
     gene            332..1372
                     /locus_tag="PXC99_001861"
     CDS             332..1372
                     /locus_tag="PXC99_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5418293.1"
                     /translation="MARPRKYENNGLPQNLLCRRRKRANGSIVEYYFYVLADGKERSL
                     GTNKHEAILEAAKLNFENSRKSPIVLFIDVAKRYELEVVPTKKAKNTRQSNLQAIHWL
                     CKFFGNPPAPLEKIEPKHISQYLQWRKDTPAVANIEVGLFNTIWNMAREWGYTALPSP
                     SQGVKKFPTKYREVYVEDYILDKIYEFADERMADIIETAYLLGQRPIDICNIHRSHIY
                     DGILHITQQKTGKKVRFEISGRLKEILDKRLGYESDWIFTNKWGKKLKRRSLGDHFKE
                     IRERAMKAYPELADEIAKVQMRDMRAKAATDISLMTTDEQAQKQLGHTSKRMTHHYIR
                     KDKILKPTDEIT"
     gene            complement(1531..1818)
                     /gene="rplY"
                     /locus_tag="PXC99_001862"
     CDS             complement(1531..1818)
                     /gene="rplY"
                     /locus_tag="PXC99_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HDL5418294.1"
                     /translation="MSFKFEAEVRSAQGKGASRRLRHNGQVPAIIYGGNAEPVSIILD
                     HDKVNNAQVHDSFYNEVLTIVVAGKEEQVKVQAIQRHPTKPKLVHLDFKRA"
     gene            complement(1970..3238)
                     /locus_tag="PXC99_001863"
     CDS             complement(1970..3238)
                     /locus_tag="PXC99_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme"
                     /protein_id="HDL5418295.1"
                     /translation="MSDLKQQALDFHEFPIPGKISVTPTKALDTQHDLALAYSPGVAE
                     PCLAIEKDPSASYRYTARGNLVAVISNGTAVLGLGNIGALASKPVMEGKGVLFKKFAG
                     IDVFDIEINETDPEKLVEIIASLEPTFGGINLEDIKAPECFYVEQKLRERMGIPVFHD
                     DQHGTAIITGAAVINGLQVVGKAISEVRLVVNGAGASAIACTNLLRSLGVKKENITMC
                     DSKGVIFQGRGDKMDETKQFYAIEDNGWRTLADAVANADVFLGCSKGGALTQEMVKTM
                     AKDLLILALANPVPEITPAEAKAVRPDAIVCTGRSDFKNQVNNVLCFPFLFRGALDVG
                     AKTINEEMKMAAAHAIAELAKEPVPFEVISTYGELSFGPEYIIPTPFDPRLIVNVSIG
                     VAKAAIQSGVATRPITDWEAYAEQLKKLVA"
     gene            complement(3395..4306)
                     /locus_tag="PXC99_001864"
     CDS             complement(3395..4306)
                     /locus_tag="PXC99_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RimK family alpha-L-glutamate ligase"
                     /protein_id="HDL5418296.1"
                     /translation="MKWLMLCREPRLYSCCRIKAACEAKGIELDILDQNRMLLGLENG
                     EFKIYYQAGESYDNNRPEPVLLPNYDGILPRFGTGSTEMGCSVLRHFEAKGIPVLNHS
                     AAFALARDKWRTLQKLAKHNLPVPNTNFAGHLVSVKSQLNQFAFPLISKVLNGSQGNG
                     VMLFEGKNNAEAVLATFRQVNEPYLCQQFVGDAKGQDIRAFVIGNEVVAAMSRTSVTG
                     DFRANIHQGGTAQPIELTQMERALAIKATKTIGLDIAGVDFLRTEKGVVILEVNASPG
                     FEGIERVNDVDIASEMVSYFINKMKNA"
     gene            complement(4303..5022)
                     /gene="nfsA"
                     /locus_tag="PXC99_001865"
     CDS             complement(4303..5022)
                     /gene="nfsA"
                     /locus_tag="PXC99_001865"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-insensitive NADPH nitroreductase"
                     /protein_id="HDL5418297.1"
                     /translation="MQSKPTLETILSHRSIRKFTEQPISEEIFQILIEAGKAASSSNH
                     LQCVTVIRVTDRQIRETLKAVSGMQYVVDCAEFLVFCIDFNKHKQLVPESQLEWAEVS
                     LIGAVDTGILAQNVFLAAESLGLGAVYIGALRNDIERVSKALNLPEYCVPLVGMCLGY
                     PAQEPAIKPRLPNSLVCYNNQYQDFDWTEFAKYNENLTAYYQARIGEPQQWQAAIHKT
                     LDKPVRPHILPFFNQKGLLKK"
     gene            complement(5034..5819)
                     /gene="mtgA"
                     /locus_tag="PXC99_001866"
     CDS             complement(5034..5819)
                     /gene="mtgA"
                     /locus_tag="PXC99_001866"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HDL5418298.1"
                     /translation="MEQSMAKRNKRFLSSLLKKIGLFFIPRKIKSKLGWLWFGSSRLL
                     TFGGTFFLIPILIFSVLPVPYSAYMVQKKVENLVQGKSYPIKKEWVSLNEISWQMQMA
                     VIASEDQKFESHFGIDLQAIETALKLNAKSKKVRGGSTISQQTVKNMFLWHGQSWLRK
                     GIEVPLTLLVENVWSKDRILEVYLNIAEFGNGIFGVEAAAKHFFKKSAKQLTLQESAL
                     LAASLPNPLVFRVDKPGPSMRKRQAWIMRQVSLLDGKNYLDKL"
     gene            complement(5794..6114)
                     /gene="trpR"
                     /locus_tag="PXC99_001867"
     CDS             complement(5794..6114)
                     /gene="trpR"
                     /locus_tag="PXC99_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trp operon repressor"
                     /protein_id="HDL5418299.1"
                     /translation="MKTLYNQRDPNEWTQFLALLEQAVAEDKLEPFFSMFLTADERGS
                     LGLRLQIVQALLKGEDSQREIQQNLNTSAATITRGSNMLKTLDQDFLQWLNGKVNGTV
                     NGKA"
     gene            complement(6194..6835)
                     /gene="lolA"
                     /locus_tag="PXC99_001868"
     CDS             complement(6194..6835)
                     /gene="lolA"
                     /locus_tag="PXC99_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HDL5418300.1"
                     /translation="MKTLFKKSVFGLALFGLANVALADAQSVAELQRRLEQVSQYSAD
                     FDQTVRSSKGKQIQQGKGKFQVKRPNLFRMDTKSPQENLIVSDGKDLWFYDPFVSQVT
                     VNTVQDAVNNTPFVLLTSGDKSHWDQYDVSQSADTFVLKPKSKKSNLKQFDVRIDQSG
                     LLKGFSTIERDGQSNLYVLRNITTGGVSSDLFKFSVPKGAELDDQRGGKKSKK"
     gene            complement(6946..9804)
                     /gene="polA"
                     /locus_tag="PXC99_001869"
     CDS             complement(6946..9804)
                     /gene="polA"
                     /locus_tag="PXC99_001869"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HDL5418301.1"
                     /translation="MATIAKNPLVLVDGSSYLYRAFHAFPPLTNRLGEPTGAMYGVLN
                     MLKSLISQVNPSHIAVVFDAKGKTFRDELFKQYKSHRPPMPDDLRPQIEPLHRIIKAL
                     GIPLISIEGVEADDVIGTLAVQAAKDGKDVLISTGDKDMAQLVNDHIMLINTMNNTLL
                     DREGVIEKYGIPPELIIDFLALMGDSADNIPGVKGVGEKTALALLQGIGSLEQIYANL
                     DQIATLSFRGAKNFAPKLEAEKANADLSYLLATIKTDVELDVTHDQLLTQPQDRAELA
                     QLFEHYEFKRWLNEVNQNANPVTQTSAEKVPNNYQVTQAVRNEENVANVVEIDRSKYE
                     TVDTEQKLSAWIEKLTAARLIAVDTETDSLDAMSANLVGISFALENGEACYIPLGHKQ
                     KAQPQQADMFGDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDL
                     TIFANYGIELQGVAFDTMIESYTQNSTGRHNMDDLAARYLGHKTIPFEELAGKGKNQL
                     TFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGVLSRIER
                     NGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTFNLASTKQLQEILFEKLGLPVLK
                     KTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRVHT
                     SYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIMA
                     HLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGL
                     SNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSG
                     NAILRKAAERVAINAPMQGTAADIIKVAMIGIDNAIRDNDEIKMIMQVHDELVFEVKA
                     DKIDHYSQLIKTEMEKAISLKVPLIAEVGVGENWDEAH"
BASE COUNT         2880 a         2197 c         1820 g         2923 t
ORIGIN      
        1 atcggtaatg tgagcatttc gataggttca acgacttaac gattatttaa ccaaatccct
       61 ctaaatgagg ggtttatttg gagagaatat gaacatctac actgacttcc tttctcgtga
      121 agagattgaa tttattactc aatgcaagca gaaaaatcta atcaaaaaac aactcaacat
      181 tatgggcatt ccatttaaag aaaatgcaaa tggattccct gttgtccgcc gtgattatgc
      241 tcaggctaaa cagcgtaaac ctattgcaac gaatgattct gactgggtat caaatgcatt
      301 taaagcgtaa attgagaaga aggaggcact tatggcacgc cctcgaaaat atgaaaacaa
      361 cggattgcca caaaacctac tctgccgccg cagaaaacga gcaaacggaa gtatagttga
      421 atactacttt tacgttcttg ccgacggcaa agaaaggtct ctcggtacaa acaaacacga
      481 agcaatttta gaagcagcca agctaaattt tgaaaatagt agaaaatccc caattgtttt
      541 atttattgat gtggcaaaac gctatgaatt ggaagttgtt ccaaccaaaa aagccaaaaa
      601 cactcgtcaa tctaatttac aggctattca ttggctatgt aaattctttg gtaacccacc
      661 tgcaccgctc gaaaaaattg agccaaagca catcagtcaa tatttacaat ggagaaaaga
      721 cacgccggct gttgctaata ttgaggtagg tttatttaac acaatttgga atatggcaag
      781 agaatgggga tacactgctc ttccaagccc atcacaaggt gtaaaaaaat tcccgaccaa
      841 atatcgtgaa gtttatgtag aggattatat ccttgataaa atctatgaat ttgcagatga
      901 aagaatggcg gatattatcg aaacagccta tttgctggga caaagaccga ttgatatttg
      961 taatatacac cgctcacaca tctatgacgg tatattgcat attactcaac agaagacagg
     1021 gaaaaaagtg agatttgaaa ttagtggtcg gctaaaagaa attttagata aaaggttggg
     1081 atacgaatca gactggattt ttaccaataa atgggggaaa aaattaaaac ggcgaagttt
     1141 aggcgatcat tttaaagaaa taagggagag agcaatgaaa gcatatcctg aacttgctga
     1201 tgaaatcgct aaagtacaaa tgcgtgatat gcgtgccaaa gcagccaccg atatttccct
     1261 aatgacaacc gatgaacaag ctcaaaaaca acttgggcat acatcaaaaa gaatgacaca
     1321 tcattacatc agaaaagaca aaatcctcaa acctaccgat gaaatcacct aaaaataaag
     1381 cccttttgcc aaatacaaaa gagccattta ctcacctaaa atccgttccg aaactatttt
     1441 gtaaataatt gattttattg acctaaaaaa ctataaaatc gcaaaaagtt tcggaacaga
     1501 aaacagcgtt aaacccttgt aaatcaagga ttaagcacgt ttgaagtcta agtgaactaa
     1561 ttttggttta gttgggtggc gttgaattgc ttgtactttt acttgctctt ctttacctgc
     1621 aacaacgata gttaatactt cgttatagaa tgaatcgtga acttgtgcgt tgttcacttt
     1681 atcgtgatct aaaatgattg atacaggctc tgcattacca ccgtagatga ttgcaggaac
     1741 ttgaccattg tgacgcaggc ggcggctcgc acccttacct tgcgcagaac gaacttcagc
     1801 ttcaaatttg aatgacatag ttttattctc ttaaataaaa tggggaaatc cccgtgaata
     1861 gaaaaaacag caggcgaccc agctgtttcc gaaaaaatat cggcatatcc gtctcgatat
     1921 gccaactacg tattttactg aagttgcaga aaaatgcaat gtaaaaatat taagcaacca
     1981 gttttttcaa ctgctctgca taagcttccc aatctgtaat tggtcgagtt gctacacctg
     2041 attgaattgc tgcttttgct acaccaatcg agacattcac gatcaaacgt ggatcaaatg
     2101 gcgttggaat aatatattcc gggccaaacg ataattcgcc ataagttgaa ataacttcaa
     2161 acggcacagg ttctttagcc aactctgcaa tcgcatgggc tgctgccatt ttcatttctt
     2221 cattaatggt ttttgcccca acatctaatg ctccacggaa taagaacggg aaacaaagca
     2281 cattattcac ttggttttta aagtctgaac gaccggtaca tacaatcgca tctggacgga
     2341 cagccttcgc ttcagcaggt gtaatttccg gcacagggtt cgctaaagca agaattaata
     2401 gatcttttgc cattgtttta accatttctt gcgttaaagc tccgcctttt gaacaaccta
     2461 agaaaacatc tgcattcgca acggcatctg ccaatgttct ccaaccatta tcttctattg
     2521 catagaattg tttggtttca tccatcttat caccacgacc ttggaaaata acgcccttag
     2581 aatcgcacat tgtgatattt tcttttttca cacctaatga acggagtaag ttagtacacg
     2641 caatcgctga tgctccagca ccgtttacca ctaaacgtac ttctgaaatt gctttaccta
     2701 ccacttgtaa tccgttaatc accgccgcac cggtaataat tgccgtaccg tgttgatcat
     2761 cgtggaacac agggattccc atacgttcac gtaatttttg ctctacataa aaacattcag
     2821 gtgctttaat atcttccaga ttaataccac caaaagtcgg ttctaacgat gcaataatct
     2881 ccactaattt ctccggatca gtttcattaa tttcaatatc aaacacatca attccggcaa
     2941 atttcttaaa tagaacacct ttgccttcca tcacaggctt acttgctaaa gcaccaatat
     3001 tgcctaagcc taacactgct gtaccattag aaattactgc aactaagtta cctcgtgccg
     3061 tataacgata agaagctgaa ggatcttttt caatcgctaa gcaaggctca gcaaccccag
     3121 gagagtacgc taaagctaaa tcgtgctgag tatctaatgc tttagtagga gtaacggaaa
     3181 tttttccggg gattgggaac tcgtgaaaat caagcgcctg ttgttttaaa tcgctcattt
     3241 tagaaacctt ataatctata aaaataaaag taatcaataa tagccaaaga gtagccattt
     3301 taccctaaat tttttcgcat ttttatggct ttgctctcat tttttatgat atttacaaaa
     3361 aataatacaa aaacgtccgc ttgttttact caaatcaagc attcttcatc ttattgataa
     3421 aataagaaac catttcagaa gctatatcaa catcatttac tctctctatg ccttcaaatc
     3481 ctgggctggc attgacttct aaaataacta cgcctttctc tgtccgcaga aaatcaacgc
     3541 ctgcaatatc aagccctatc gttttagttg ctttaattgc taacgcacgt tccatctgag
     3601 ttaattcaat cggttgagcc gttccacctt gatgaatatt ggctctaaaa tcgcctgtta
     3661 cgctggttcg gctcatggca gcaaccactt cattgccaat cacaaacgcc cgaatatctt
     3721 gccctttagc gtcgcccaca aattgttggc atagataagg ctcatttact tgcctaaagg
     3781 tcgctaacac ggcctcggca ttatttttgc cttcaaatag cattacgcca ttcccctgtg
     3841 aaccatttag cacttttgaa ataagtggaa aagcaaattg attgagttgt gatttcacag
     3901 aaaccaaatg ccctgcaaaa ttcgtattag gaaccggcaa attgtgtttg gctaattttt
     3961 gtaatgttcg ccatttgtct cgggctaacg caaatgccgc tgaatgattt agaacaggaa
     4021 tacctttcgc ctcaaaatgg cgtaacaccg aacagcccat ttcggtactg cctgtgccaa
     4081 aacggggtaa aatgccgtca taattcggca acaataccgg ctccggacgg ttgttatcat
     4141 agctctcgcc agcttgatag tagatcttaa attcgccatt ttctaacccg agtagcattc
     4201 tattctggtc taaaatatcc agctcaatcc cctttgcctc acaagcggct tttattcgac
     4261 agcagctata taaacgaggc tctcgacata gcattagcca cttcattttt tcagcaatcc
     4321 tttctgattg aaaaacggca aaatatgcgg acgaacaggc ttatccaatg ttttatgaat
     4381 agctgcttgc cattgttgtg gctcgccgat tctggcttgg tagtaagcgg tcaaattttc
     4441 attatatttt gcaaattcag tccaatcaaa atcctgatat tgattgttat aacaaaccaa
     4501 actattcggc aaacgaggtt ttattgccgg ctcttgtgcc ggatacccca aacacatacc
     4561 caccagtgga acacaatatt ccggcaagtt aagggcttta gaaacccgct caatatcatt
     4621 acgcaatgct ccaatataca ccgctcccag ccctagtgat tcggcggcta aaaatacatt
     4681 ctgggccaaa ataccggtat ctaccgcccc aatcaacgac acctccgccc attccaactg
     4741 cgattcaggg acaagttgtt tgtgtttatt aaaatcaatg cagaacacca aaaattcagc
     4801 acaatctact acatattgca tacctgaaac ggcttttaat gtttctcgaa tctgccgatc
     4861 ggttacacga atcaccgtca cacattgcag atgatttgaa cttgaagccg ctttacctgc
     4921 ctcaattaag atttggaaaa tctcttcaga aataggctgt tcggtaaatt tacgaataga
     4981 acggtgagat aaaatcgtct caagagtcgg tttactttgc atatttttct cgtctaaagt
     5041 ttatctaaat aatttttgcc atcaagcaaa cttacttgtc gcataatcca cgcttggcgt
     5101 tttcgcatac tcgggccggg tttatctacc ctaaacacca acgggttagg caaagaggct
     5161 gccaatagtg cggattcttg caaggttagc tgtttggctg attttttgaa aaaatgcttt
     5221 gcggctgctt ccaccccgaa aatgccgtta ccaaattccg caatattgag gtacacctct
     5281 aaaatccgat ccttactcca cacattttcg actaacaggg ttaaaggcac ttcaatccct
     5341 ttgcgtaacc agctttgccc gtgccacaaa aacatatttt ttaccgtttg ttgcgaaatg
     5401 gttgaacctc cacgcacttt tttggattta gcattcagtt tcaaggcagt ttctatcgct
     5461 tgtaagtcaa tgccaaaatg gctttcaaac ttttgatctt ctgaggcaat cacagccatt
     5521 tgcatttgcc acgaaatctc attcaggctc acccattctt ttttgatcgg gtaagatttc
     5581 ccctgaacca gattctccac ctttttttgc accatatacg cagaataagg caccggtaac
     5641 accgaaaaaa tcagtatcgg aatcaggaaa aatgtgccac caaaggttaa taagcgacta
     5701 gaaccaaacc aaagccagcc cagtttactt tttattttgc gaggaataaa aaaaagccct
     5761 attttcttca aaagagagct taaaaatcgc ttgttacgct ttgccattga ctgttccatt
     5821 aaccttgccg ttcagccatt gcagaaaatc ttggtcgagt gttttaagca tatttgaacc
     5881 acgagtgatg gttgccgcac tggtatttaa attttgttgg atttcccgtt gcgaatcttc
     5941 accttttagc aaagcttgca caatttgtaa acgcaagcct aatgaacctc gctcatcggc
     6001 ggtgagaaac attgagaaaa acggctcaag tttatcttcc gcaaccgctt gttcaagcag
     6061 agccaaaaac tgcgtccact cgtttggatc tcgctggtta tagagtgttt tcatactgtc
     6121 ccttgaagta aaaacggtga caagcggtca gatttttaca aaattttgca gaaaaacgac
     6181 cgcttgctct ccattatttt ttcgattttt taccgccacg ttggtcgtct aactctgccc
     6241 ctttcggtac gctgaattta aacaaatcgc ttgagacacc gccggtagta atattgcgta
     6301 acacatataa gttactttgc ccgtcacgct caatggtact gaaacctttt aataaaccgc
     6361 tttggtcaat ccgcacatca aactgtttta aattgctttt tttcgatttt ggcttaagca
     6421 cgaaagtatc agcactctgg ctgacatcat attgatccca gtggctttta tcaccgctgg
     6481 ttaataagac gaatggcgta ttattaactg catcttgcac ggtatttacc gtaacttgtg
     6541 aaacgaaagg atcgtaaaac cataaatctt tgccgtcaga tacaatcaaa ttttcttgtg
     6601 gtgatttggt atccattcta aataagttcg ggcgttttac ttggaatttg cctttgcctt
     6661 gctgaatttg tttacctttg ctagaacgca cggtttggtc gaaatccgca ctatattggc
     6721 ttacttgttc caaacggcgt tgtaattctg caacagattg agcatcagcc aatgccacat
     6781 ttgccaagcc aaataacgct aaaccgaata ccgatttttt aaataatgtt ttcatttgtt
     6841 ttccttttta ccaacaagaa ttttcttgtt tgacaataaa atcatcaaaa gtttcatatt
     6901 aatgaactgt tacaacaata caataaaagt cgtgaattgt atagtttaat gagcttcgtc
     6961 ccagttttcg cctacgccaa cttcggcaat cagtggcact ttgaggctaa tcgctttttc
     7021 catttcggtt ttgattaatt ggctgtaatg gtcgatttta tcggctttga cttcaaacac
     7081 caattcatcg tgaacctgca taatcatttt gatttcatca ttatcacgaa tcgcattatc
     7141 aataccaatc atcgccacct taataatatc ggcagccgtg ccttgcattg gggcgttgat
     7201 tgccacccgt tctgctgctt tacgcaaaat agcattgccg gatttaatat caggcaagta
     7261 caaacggcga ccaaataggg tttcaacata gcctttttca actgcaactt cacgaatatc
     7321 ggtcataaat tgttgaaccg ccgggtaacg ttggaagtag agatccatat atttttgagc
     7381 ctctgcacgc ccaatcccta attggtttga aagcccaaat gacgacattc cgtaaatcag
     7441 cccgaagtta attgctttcg cactgcggcg ttgttcggag gtgacttcac ctaactccac
     7501 cccgaaaatt tcggcagcgg tagcacggtg aatatctttg ccctccgcaa aggcgttaat
     7561 cattccctca tcattcgata aatgagccat aatccgtagc tcaatttgtg aatagtcggc
     7621 agcgacaatt ttataacctt ctctcgcgac aaaagcttgg cgaatccgtc tgccctcttc
     7681 attgcggatc ggaatgttct gcaaattcgg atcgctggaa gaaaggcgtc cggttgcggt
     7741 gactgcttga ttgtaagagg tatgcacccg ccctgttttt ttgttaatca gttgtggtaa
     7801 tttatcggtg taggtagatt tcaacttact taacccacga tgctccatta ataacttcgg
     7861 cactaaatgc ccttgttgag ccaactcgtc taacacttct tcgttggttg agggtgcacc
     7921 ttttggagtt ttcttcaaca ccggcaagcc taatttttca aacaaaatct cttgtaattg
     7981 tttagttgag gcaagattga aggtttgccc tgcttctgcg tgtactaatg tttcaacttc
     8041 ctccaaacgt ttttcaattt cagccgattg ggtcaataat tttttcgggt caatcaacac
     8101 gccattgcgt tcaattcgag aaagtacgcc cacaagtggc atttcaattt catcgaataa
     8161 cttcaccaat tcaggctctt gctgtagttt ttcccacaat acttggtgga gtttcatcgt
     8221 cacatcggca tcttctgccg catattcagc cgcttttgct atctcgattt tatcgaaggt
     8281 cagttgattt ttccccttac cagcaagctc ttcaaacgga atcgttttat gccccaaata
     8341 acgggcggct aaatcgtcca tattatgacg accggtgctg ttttgggtgt aagattcaat
     8401 catcgtatca aaagcaacac cttgtagctc aatgccgtag ttcgcaaaaa tggttaaatc
     8461 atatttaata ttctgcccga tctttttaat ctccgggtta agcaaaatcg gcttgagttt
     8521 acttaaacaa gcggtcaaat ttagctgatt ttttaccaat tcatcggaag acgggctttc
     8581 tgaacgctcc tcatcaccga acatatcggc ttgttgcggt tgggcttttt gcttatgccc
     8641 aagcggaata tagcacgcct cgccattttc cagtgcaaag gaaataccga ccaaattagc
     8701 cgacattgcg tcaaggctgt cggtttcggt atccaccgca atcaaacgag ctgcggtgag
     8761 tttttcgatc caggctgata atttctgttc agtatcaacg gtctcatatt tgctacgatc
     8821 gatctcgacc acatttgcaa cattttcctc atttctgacc gcttgtgtta cttggtaatt
     8881 attcggtact ttttcagccg aagtttgagt gaccggattg gcattttgat tcacttcgtt
     8941 cagccagcgt ttaaattcat aatgctcaaa taattgagca agctcagcac ggtcttgcgg
     9001 ctgtgttaaa agttgatcgt gagtaacatc aagttccaca tcggttttga tggtagcaag
     9061 caaataggat aaatcggcat tcgctttttc cgcttccaat tttggggcga aattttttgc
     9121 cccacggaaa gaaagggtgg caatttgatc caaattagca taaatctgtt caagtgaacc
     9181 aatgccttgc aataaagcta atgcggtctt ttcccccaca ccttttacgc ccggaatgtt
     9241 atcggcggaa tcgcccatta atgccagaaa gtcgataatc aactcaggcg gaatgccata
     9301 tttttcaatc acgccttcac gatctaacaa agtattgttc atcgtgttaa tcaacataat
     9361 gtgatcgttc accaattgtg ccatatcttt atcgccggtg ctgatcaaca catctttgcc
     9421 gtctttagcg gcttgcacag caagcgtgcc gatcacatca tcagcttcca caccttcaat
     9481 cgaaatcagt ggaatgccta aggctttgat aatgcgatgc aaaggctcaa tttgagggcg
     9541 taaatcatcg ggcattggtg ggcggtgcga tttatattgc ttaaacaact catcacggaa
     9601 ggttttccct ttggcatcaa acaccacagc aatatggctt ggattcactt gtgaaatcag
     9661 gctttttaac atattcagca cgccatacat tgcccctgtc ggttcgccta agcgattagt
     9721 gagcggaggg aaagcgtgaa atgctcgata taaataggaa gaaccatcca ccaataccag
     9781 tggatttttt gcgatagttg ccataaaaat ctctttataa
//
LOCUS       DANLVT010000091         9722 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.091, whole genome shotgun sequence.
ACCESSION   DANLVT010000091 DANLVT010000000
VERSION     DANLVT010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9722)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9722)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9722
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.091"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            19..282
                     /locus_tag="PXC99_001870"
     CDS             19..282
                     /locus_tag="PXC99_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5418302.1"
                     /translation="MSTLEDIKKTAKDWHRADIIAALHKAGWSLRQLSLKHGYSQSST
                     LKNAVDRPWLKGERIIAEAIGISPEEIWPERYAQRNHKKFADR"
     gene            298..828
                     /locus_tag="PXC99_001871"
     CDS             298..828
                     /locus_tag="PXC99_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5418303.1"
                     /translation="MSENSLKTHYSAKELAELSLACLPKTKQGVLYQAKKQGWTTHKK
                     VGVGGEILEFALSNLPQEIQTEIRSRFMSAVVEAKPKKLPAVRAEVDVGNLTTKQREI
                     ADARMALVAYVLELEGSMSRIKAITYLCNLAKQGEMPPHLVELVAVANAKKTAKRTIV
                     PIFSPIMPDFPLDSRD"
     gene            complement(844..1971)
                     /locus_tag="PXC99_001872"
     CDS             complement(844..1971)
                     /locus_tag="PXC99_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HDL5418304.1"
                     /translation="MNKLKSINLQVYIMLIAIVVIMSFFSIATDGAYLSARNISNLLR
                     QTSITGILAIGMVFVIISAEIDLSVGSLMGLLGGFAAISNVWWGWPLSLTIIVTLILG
                     VMLGAWSGWWVAYQKVPSFIVTLAGMLAFRGVLVGLTNGTTVSPISNEMTTIGQGYLP
                     DMVGMILGTIGIFCFIVWGSYQRKARQKLNLTVPSMSKDTLKYGLVAIIVLGAIYLLN
                     DYRGVPFPVLVLVILAIAGTFLARKTAFGRHIYAIGGNIDAARLSGISVEKVKLAIFA
                     LNGLLVAIAGLILSSRLGAGAPSAGQNAELDAIAACVIGGASLAGGIGSIYGVVIGAF
                     IIALLDNGMSMLDVPTFWQYIVKGGILLLAVWVDTISKKKA"
     gene            complement(1975..3489)
                     /gene="xylG"
                     /locus_tag="PXC99_001873"
     CDS             complement(1975..3489)
                     /gene="xylG"
                     /locus_tag="PXC99_001873"
                     /EC_number="7.5.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter ATP-binding protein"
                     /protein_id="HDL5418305.1"
                     /translation="MAKLLEMKNITKKFGEVVALNNISISLETGEILSLCGENGSGKS
                     TLMKVLCGIYPAGDYEGEIYFSGEKLIARNIKDTEEKGISIIHQELTLVKNMSILENM
                     FLGNEITKSGITDDNEMYLRCKTLLEQVQLDIDPNTKVGELGLGQQQLVEIAKALNKQ
                     VRLLILDEPTASLTEKETEILLSLIKDLQAHNIACVYISHKLNEVKAISDKICVIRDG
                     EHIGTRSAEGMSEDDIITMMVGREITSLYPHEPHNIGEEVLRVENLTAWHPTNTHIKR
                     VDNANFVLRQGEILGIAGLVGSGRTEMAQCIFGSYQGKYQGDIFLHKQPIKIKNCAQA
                     IENHIVMVPEDRKKHGIIPIMGVGKNITLSSLPQFCFGKKVINEPLEETIINQSIAKL
                     KVKTSSPELAIGRLSGGNQQKAILAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQ
                     LAKEGMAIIVISSELPEVLGISDRVLVMHQGKIKADLINQDLTQEKVMEAALKE"
     gene            complement(3556..4557)
                     /gene="xylF"
                     /locus_tag="PXC99_001874"
     CDS             complement(3556..4557)
                     /gene="xylF"
                     /locus_tag="PXC99_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005576719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5418306.1"
                     /translation="MKLKSKLLAVATATLMVLSNASVAKDLKIGMSIDDLRLERWQKD
                     RDIFVNKAESLGAKVFVQSANGDATAQISQIENMLNKDIDVLVIIPFNGEVLSNVIAE
                     AKKEGVKVLAYDRLINNADVDFYVSFDNEKVGELQAKSIIGQKPEGNYFLMGGSPVDN
                     NAKLFRKGQMKVLQPLIDSGKIKVVGDQWVDSWLAEKALQIMENALTANKNNIDAVVA
                     SNDATAGGAIQALSAQGLSSKVAISGQDADLAAIKRIIAGTQTMTVYKPITNLADKAA
                     EIAVALGKDEKVEMNAQLNNGMKEVPAYLLEPVVVTKENIDDTVIKDGFHTKDAVYK"
     gene            4799..6118
                     /gene="xylA"
                     /locus_tag="PXC99_001875"
     CDS             4799..6118
                     /gene="xylA"
                     /locus_tag="PXC99_001875"
                     /EC_number="5.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose isomerase"
                     /protein_id="HDL5418307.1"
                     /translation="MSNYFDKISKVQYEGANSTNPFAFKHYNPDEVVLGKTMAEHLRL
                     AVCYWHTFCWTGNDMFGVGSLDRSWQKTGDLLQGAKQKAEIAFEFFQKLGIPYYCFHD
                     VDVAPEGNNFKEYQHNFNTIVDILEQKQAETGVKLLWGTANCFTNPRYMSGASTNPNP
                     EVFAWAAAQVFTAMNATKRLGGENYVLWGGREGYETLLNTDLKREREQIGRFMQLVVE
                     HKHKIGFNGTLLIEPKPQEPTKHQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAG
                     HTFQHEIATATALDIFGSIDANRGDPQLGWDTDQFPNSVEENTLVMYEILKAGGFTTG
                     GFNFDAKIRRQSTDPYDLFHAHIGAIDVLALSLKRAAKMLEDQALQKVVDNRYAGWNQ
                     DLGLQILNGKASLEDLAKIVETQGLDPKPVSGQQEYLENLVNSYIYR"
     gene            6271..7716
                     /gene="xylB"
                     /locus_tag="PXC99_001876"
     CDS             6271..7716
                     /gene="xylB"
                     /locus_tag="PXC99_001876"
                     /EC_number="2.7.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylulokinase"
                     /protein_id="HDL5418308.1"
                     /translation="MYIGIDLGTSGVKVVLLDENQHIIAITQKSLPIFRPHPLWSEQN
                     PQDWWNATNEAMLELSATQDLQAVKAIGLTGQMHGATLLDNADNVLSPAILWNDGRSF
                     MECEELEQLVPNSREITGNLMMPGFTAPKLRWVDKHQPDIAEKVSKVLLPKDYLRLLM
                     SGEYASDMSDASGTMWLDVGKRNWNKSLLNACGLDIENMPKLFEGNQITGYLRPTLAE
                     QWKMKSVPIVAGGGDNAAGAIGIGLYQTGQAMLSLGTSGVYFVVSDKFQANPQKAVHS
                     FCHALPDRWHLMSVILSAASAVDWAVKSLGLKDVSTLFQQVEASQTASDAIFLPYLSG
                     ERTPHNDPYAKGVFWGLSHNDNQITMAKAVIEGVSFALAEGIEVLHETGVVADNIALI
                     GGGAKSVYWRQLLADISGKTFEYRTSGDVGPALGAAKLAQIALNPNQDIATFCQPLPL
                     EQVYQPTPARYAEYQQKRQKFTELYRRLKGL"
     gene            complement(7779..8102)
                     /locus_tag="PXC99_001877"
     CDS             complement(7779..8102)
                     /locus_tag="PXC99_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="QacE family quaternary ammonium compound efflux
                     SMR transporter"
                     /protein_id="HDL5418309.1"
                     /translation="MNVWILLAISICLEIAATNLLKLSNGFTKAIPTIGSLALYGLSF
                     YFLSIIFRTLPVGIVYAIWSGVGIVLTALVAYFAFGQKIDLAGLIGISLIIAGVLVIN
                     LFSKV"
     gene            8226..8768
                     /locus_tag="PXC99_001878"
     CDS             8226..8768
                     /locus_tag="PXC99_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase family protein"
                     /protein_id="HDL5418310.1"
                     /translation="MAQVYIVHGYTANADKHWFPWLEQELAKCGVSCERLNMPDSAKP
                     SLDGWLNHLAQNVELTDQTVFVGHSLGCIAILNFLAKNYAKIKGAVFVSGFYQPVENL
                     PELSAFTNYYAILPSVSSFPSYVVSALDDKVVNHQYSDALAQHLHADYIRLNQGGHFL
                     DREGVTELPVVLELVKKLLE"
     gene            complement(8939..>9722)
                     /gene="dapF"
                     /locus_tag="PXC99_001879"
     CDS             complement(8939..>9722)
                     /gene="dapF"
                     /locus_tag="PXC99_001879"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HDL5418311.1"
                     /translation="VVDGVTQNVYLTEEMIRTLSDRHRGIGFDQLLLVEPPYDPELDF
                     HYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIHVSTAKGKMVLSLQEDGKVRV
                     NMGEPIWEPSQVPFTANKFEKNYILRTELQTVLCGVVSMGNPHCVLQVDDVKTAPVNE
                     LGPLLESHERFPERANISFMQVVNRNHVKLRVYERGAGETQACGSGACGTVAVGIMQG
                     LLDNKVQVDLPGGTLIIEWQGVGHPLYMTGDATHIYDGFIKL"
BASE COUNT         2877 a         2089 c         2009 g         2747 t
ORIGIN      
        1 agcgaaagga gttatctaat gagtacattg gaagatatta aaaaaacagc gaaagactgg
       61 catagggccg acatcatcgc tgctttacat aaagcgggtt ggtcgcttag acaactctca
      121 ttgaagcatg gctacagtca atccagcacc ttgaaaaacg ctgtagatcg tccgtggtta
      181 aagggtgagc gtattattgc cgaagcaatc ggtatatcac ccgaagaaat ttggcctgaa
      241 cgttatgctc aacgaaacca taaaaaattt gccgacagat agcttaaaga ggtttttatg
      301 agtgaaaaca gtctaaaaac acactattcg gcaaaagaat tggctgagtt aagtttagcc
      361 tgtttaccta aaacaaagca aggagttttg tatcaggcaa agaaacaagg atggactact
      421 cataaaaagg ttggagttgg gggagaaatt ttagaatttg cactctcaaa cctccctcaa
      481 gaaatccaaa ccgaaatccg ctcccgcttt atgtcggcgg tggtggaagc caagccgaaa
      541 aagttaccgg cagtgcgtgc ggaggtggat gtgggaaacc tgaccaccaa acagcgagaa
      601 attgctgatg cacgaatggc actggtggcg tatgtgttgg aactggaagg ctcaatgagc
      661 cggattaaag cgataaccta cctttgcaac cttgccaaac aaggcgaaat gccaccgcac
      721 ttggtggagc tggttgccgt agcaaatgct aaaaagacgg caaaacgcac aatagttccc
      781 atttttagcc cgattatgcc ggatttcccg ttggatagtc gagattgacc gcttgttatc
      841 caattaggct tttttcttgc tgatggtatc tacccaaact gcaagcagta gaattccacc
      901 tttaacgata tattgccaga aggttggcac atcaagcata ctcataccgt tatccagcaa
      961 agcaataata aatgctccaa taactacgcc ataaatgcta ccgataccgc cggctaaact
     1021 ggctccacca atcacgcagg cggcaatcgc atctaattcg gcattttgcc cggcggaagg
     1081 tgcgccggct ccaagacgtg agcttaaaat caagcctgca atggcaacta ataagccgtt
     1141 taaggcaaaa atcgcaagtt tgactttttc aactgaaatc cccgagaggc gagcggcatc
     1201 aatgttgcca ccaatcgcat aaatgtgacg cccgaaggcg gtttttctgg ccaagaatgt
     1261 gccggcaatg gctagaatca ccaacaccaa taccgggaat ggcacaccac ggtaatcatt
     1321 gagtaggtag atcgcaccta atacgataat tgcaactagt ccgtatttca gcgtgtcttt
     1381 cgacatagaa ggcacagtaa gattgagttt ttgtctggct ttgcgttggt agctacccca
     1441 aacaataaag caaaatatcc cgatagtacc taaaatcata cccaccatat caggcaaata
     1501 gccttgacca atggttgtca tttcattgct aatcggtgaa acggttgtcc cgttggttaa
     1561 gccgaccaat acaccacgaa acgccagcat accggcaaga gttacaataa aggacggcac
     1621 tttttgataa gcaacccacc aaccgctcca agcacccagc atgacgccta aaattaaagt
     1681 aactataata gttaacgaga gcggccagcc ccaccataca ttactgatgg cggcaaatcc
     1741 accgagtaag cccattagcg agccaaccga taaatcaatt tctgcggaaa taatcacaaa
     1801 taccataccg atggcaagaa taccggtaat ggaggtttgg cgtaacaggt tggagatatt
     1861 tctggcactt aaataagcac cgtcagttgc aatagagaaa aagctcataa tcacaacaat
     1921 tgcaatcagc ataatataaa cttgtaaatt aatcgatttt aacttattca taggttactc
     1981 cttgagtgcc gcttccatta ctttttcttg ggtaaggtct tggttaatca aatctgcttt
     2041 aattttgcct tggtgcataa ccaatacacg atcactaatg cctaaaactt caggtaattc
     2101 ggaggaaatg acgataattg ccataccttc tttagctaat tggttgatga gcttataaat
     2161 ttcatatttt gctcccacgt cgataccacg ggtcggctca tctaaaatca ggattttagg
     2221 gttaagcaat aggcattttg ccaaaattgc tttttgctga ttaccgccac ttaaccgtcc
     2281 aattgctaat tcaggcgagg aagttttcac tttcagtttt gcaatagatt ggttgataat
     2341 ggtttcttcc agcggttcat ttattacttt tttgccaaaa caaaattgcg gtaatgaaga
     2401 gagagttatg tttttaccca cccccataat tggaatgatg ccgtgttttt tgcgatcttc
     2461 cggcaccatc acaatatggt tttcaatcgc ttgtgcacaa tttttgattt taatcggttg
     2521 cttatgcaga aaaatatcac cttgatattt gccttggtaa gagccaaaaa tacattgtgc
     2581 catctcggtt cgccctgaac cgaccaaacc agcaatacct aaaatttcac cttggcgtag
     2641 tacaaaatta gcattatcaa cccgtttgat atgtgtattg gttgggtgcc aagcggttaa
     2701 attttcaact cgaaggactt cttcaccaat attgtgtggc tcgtgtgggt agagcgaggt
     2761 aatctcacgt ccaaccatca tcgtaataat atcgtcttca ctcattccct ctgcactgcg
     2821 agtaccgata tgttcgccgt ctcgaatgac acagattttg tcggaaatgg ctttcacttc
     2881 attcaatttg tgtgaaatat aaacacaagc aatattgtga gcttgtaaat ctttaattaa
     2941 actcagcaga atctcggttt ctttttcggt taacgaggcg gtaggctcgt ctaaaatcaa
     3001 caaccgtacc tgtttattca atgctttggc aatttcaacc aactgttgtt gccctaaacc
     3061 tagctctcca actttggtgt ttgggtcaat atccaactgc acttgttcaa gtaaggtttt
     3121 acaacgcaga tacatttcat tgtcatctgt aatccctgat ttggtaattt cattccctaa
     3181 aaacatattc tccaaaatcg acatattttt tactaaggtc aattcttggt gaataatcga
     3241 aatgcctttt tcttcagtat ctttgatatt tctggcaatc aatttttcgc cggaaaaata
     3301 gatttcccct tcataatcac cggcaggata aattccacat aatactttca tcagagttga
     3361 tttgcctgaa ccattttcac cacataaaga aagtatttcg ccggtttcaa gggaaattga
     3421 aatattattt aatgccacaa cctcaccgaa ttttttagtg atgttcttca tttctaataa
     3481 tttcgccata cttagttagc cccttatttt caaaaatggc gaggaagcct cgccatctag
     3541 aaaaattaaa gtgatttatt tatatactgc atctttggta tggaagccgt ctttaattac
     3601 tgtgtcatca atattttctt tagttacaac aaccggctct aataaatatg ccggtacttc
     3661 tttcataccg ttatttaatt gagcattcat ttctactttc tcatctttac ctaatgcaac
     3721 agcaatttcg gcagctttgt cggctaaatt ggtaattggt ttatacactg tcatcgtttg
     3781 cgtaccggca ataatacgtt taattgcggc taaatctgca tcttgtccgg aaattgcaac
     3841 cttgctggat aacccttggg cacttaacgc ttgaattgca ccgcctgcgg ttgcatcgtt
     3901 tgaagctaca actgcatcaa tattattttt attagcagtt agtgcatttt ccataatctg
     3961 taatgctttt tcagcaagcc aagaatctac ccattgatcg cctaccactt taatttttcc
     4021 actgtcaatt aacggttgta gcaccttcat ttgaccttta cggaacagct tcgcgttatt
     4081 atctacaggt gaaccaccca ttaggaaata attcccctcc ggcttttgcc caataatgct
     4141 tttagcctgc aattcaccta ctttttcatt atcaaatgaa acataaaaat ccacatcggc
     4201 attattgatt aagcggtcgt aagcaagtac cttaacacct tctttcttcg cctcggcaat
     4261 cacattggat aacacttcgc cgttaaacgg aataatcacc aatacatcaa tatctttatt
     4321 caacatattc tcaatttgtg agatttgtgc ggttgcatcg ccatttgccg attgaacgaa
     4381 gacttttgct cctaagcttt ccgctttatt cacaaaaata tctcggtctt tttgccaacg
     4441 ctctaagcgt aaatcatcaa ttgacatacc gatttttaga tctttagcaa cagaagcatt
     4501 gctgagtacc attaaagtcg ccgtagcaac ggctaataat ttagacttaa gtttcatagt
     4561 tcacctcatt ggttatgaaa atgtgagcat ctttttcgcc cgtaagcagt ctgggcttat
     4621 ttcaaatgaa gttcaattat catatttatt aatatcatta tgatttttca cttttgtgat
     4681 ctacgccaca ttaaccaata atcgaaatcc aaaaacgaaa tatcgtaatt gaaggttttg
     4741 cataattttc cgatgatgtt accgaaagat tatttttcca attcatagga gcattattat
     4801 gtctaactat ttcgacaaaa tctcaaaagt acaatatgaa ggggctaatt ccaccaaccc
     4861 gtttgcattc aaacattaca acccggatga agtggtttta ggcaaaacga tggcagaaca
     4921 tctgcggtta gcggtttgct attggcacac cttctgctgg acgggtaacg atatgtttgg
     4981 cgtgggttcg cttgacagaa gctggcaaaa aacgggggat ttactgcaag gtgcgaagca
     5041 aaaagcggaa attgcctttg aatttttcca aaaattaggc attccttact actgcttcca
     5101 cgatgtggat gttgcaccgg aaggcaacaa tttcaaagaa tatcagcaca atttcaacac
     5161 tattgtggat attttagagc aaaaacaagc tgaaacaggc gtgaaattat tatggggtac
     5221 ggcgaactgc tttaccaatc ctcgctatat gtcgggtgct tcaaccaatc cgaatccgga
     5281 agtctttgct tgggcggcag cacaagtctt taccgcaatg aacgcaacca aacgcttagg
     5341 cggcgaaaat tatgtattat ggggcggacg tgaaggttat gaaaccctac tcaacactga
     5401 cttaaaacgt gagcgtgaac aaatcggtcg ctttatgcag ttagtggtgg aacataaaca
     5461 caaaatcggt tttaacggca ctttattaat tgagccaaaa ccacaagaac caaccaaaca
     5521 tcaatatgac tacgatgttg ccaccgttta cggtttctta aaacagtttg gtctagaaaa
     5581 agagatcaaa gtcaacattg aagcaaacca cgccactctt gcagggcata ctttccaaca
     5641 cgaaattgcg actgccaccg cattagatat ttttggctcg attgatgcca accgaggtga
     5701 tccgcaatta ggttgggata ccgaccaatt cccaaacagc gtggaagaaa acacccttgt
     5761 gatgtatgaa atcttaaaag caggtggttt cacaacgggc ggtttcaact ttgatgcgaa
     5821 aatccgccgc caaagtaccg atccgtatga tttattccac gcacatatcg gggcaattga
     5881 tgtgttagcc ctttcgctaa aacgtgcggc aaaaatgctg gaagatcaag cattacagaa
     5941 agtagtagat aaccgctacg ctggctggaa ccaagatttg ggcttacaaa ttctaaacgg
     6001 taaagcaagc cttgaagatt tggcaaaaat agtggaaacc caagggttag atccaaaacc
     6061 tgtttccggt cagcaagaat atttggaaaa tttggtaaat agctatattt accgttaatc
     6121 tacaagcggt tgttttttat caattttttg caaagttaag ctcgatctga tccccctctt
     6181 tgctaaagag gggtgataga tctccaaaac ttaaaattgc aaatgttccg aataaaatga
     6241 ccgcttgtat tcaataacaa aggaatattt atgtacattg gaatcgatct cggcacatcg
     6301 ggtgtgaaag tcgtgttact cgatgaaaat caacacatta ttgccatcac acaaaaatca
     6361 cttcctattt ttcgtccaca cccattgtgg tctgaacaaa atccgcaaga ttggtggaat
     6421 gccaccaatg aagcgatgtt agaactttcc gctactcaag atttacaagc agtaaaagcg
     6481 attggtttaa ccgggcaaat gcacggagcg actttactag ataacgcaga taatgtactt
     6541 tcccctgcga ttttatggaa tgacggacgt agttttatgg aatgcgaaga gttagaacag
     6601 cttgtgccaa atagccgtga aattacaggc aacctgatga tgccgggctt taccgctccg
     6661 aaattgcgtt gggttgataa acaccagccc gatattgccg aaaaagtcag caaagtcttg
     6721 ctaccgaaag attatctccg cttgttgatg agcggcgaat atgcctctga tatgtctgat
     6781 gcctccggca caatgtggct tgatgtgggt aaacggaatt ggaacaaatc gctactaaat
     6841 gcttgcggat tagacattga aaatatgccg aaactgtttg aaggcaatca aatcacaggt
     6901 tatttacgtc caacccttgc cgagcaatgg aaaatgaaat ctgtgccgat tgtggcaggc
     6961 ggtggcgata atgctgccgg tgcaatcggc attggcttat accaaaccgg gcaagctatg
     7021 ctctcattgg ggacttcagg ggtttatttt gtagtgagcg ataaatttca ggctaatccg
     7081 caaaaagcag tgcatagttt ttgccacgct ttacctgatc gttggcatct gatgtcagta
     7141 atattaagtg ccgcttctgc ggtagattgg gcagtaaaat cattgggact aaaagatgta
     7201 tcgactttat tccaacaggt tgaagcaagc caaacggcat ctgatgctat tttcttacct
     7261 tatttatcgg gtgaacgtac accgcataat gacccttatg cgaaaggcgt attttgggga
     7321 ttaagccata atgacaacca aataacgatg gcaaaagccg tgattgaagg ggtaagtttc
     7381 gctttggctg aagggattga ggtactccac gaaactggtg tagttgctga caatattgca
     7441 ttaattggcg gtggagcaaa aagtgtgtac tggcgacaac tacttgccga tattagcggt
     7501 aaaacctttg aataccgcac cagtggtgat gtcggtccgg cattaggggc ggcaaaactc
     7561 gctcaaattg cgctaaaccc aaatcaggat attgctacgt tctgtcagcc gttacccctg
     7621 gaacaggttt accaaccaac ccctgcccgc tatgcagaat atcaacaaaa acgccaaaaa
     7681 tttactgagc tttaccggcg gttaaagggg ttataattct tgccaactat tacaagcggt
     7741 tgattttgca gatttttttg taaaatcaac cgcttgtatc acactttaga aaacaaatta
     7801 atcaccaata caccggcaat aatgaggctg atgccgatta agcctgccaa gtcaattttc
     7861 tgtccgaaag caaaataagc aacaagggcg gtaaggacaa tccctacgcc ggaccaaata
     7921 gcatacacga ttccgaccgg tagggtgcgg aaaataatag agagaaagta aaaggataaa
     7981 ccgtataagg cgagcgagcc aatagtcggt atagctttgg tgaagccgtt gcttaatttg
     8041 agtaaattgg tggcagcgat ttcgaggcag atggaaatcg caagtaaaat ccaaacgttc
     8101 attgatgacc tctttgcgta aatgcgtgct attttacctg agttgcaaaa aaatttaaaa
     8161 aaatcaccgc ttgttttttc ctgattaagc tatggtacaa tctttggtga atcaggaggt
     8221 gtgaaatggc acaggtttat atcgtacacg gttatacggc gaatgccgat aagcattggt
     8281 ttccttggct ggagcaagaa ttagcgaagt gtggtgtcag ttgtgagcgg ttgaatatgc
     8341 cggattcggc aaagccgtca ttagatggtt ggttaaatca tcttgcacaa aatgtggagc
     8401 tgaccgatca aacggttttt gtcgggcata gtttaggttg cattgccatt ttgaattttt
     8461 tagccaaaaa ttacgccaag attaaagggg cggtgtttgt gtcggggttc tatcaaccgg
     8521 tagaaaactt acccgaactg tctgccttta ccaactatta tgcgattttg ccgagcgtat
     8581 cgagctttcc aagctatgtg gtaagtgcgt tagatgataa ggtcgtgaat caccaataca
     8641 gtgatgcgtt agcccaacat ttgcacgcgg attatattcg gttaaatcaa ggcgggcatt
     8701 ttttggatag agaaggtgtt accgaattac ctgtggtgtt ggagttggtg aagaagttac
     8761 tcgagtgaaa cctgttttgg tacaagcgag gacgcttgca ccatctataa gttgaattta
     8821 aacaaaagtt atacatcagt ctgatagtgc cagcgtccac gctggtactt ttgtataaac
     8881 caaccctatt ttgcaaaaaa acggtaaaaa taaaccgctt gcctccctat gggaaaactt
     8941 acagtttaat aaatccatca taaatgtggg tggcatcgcc ggtcatatac agaggatgcc
     9001 ctactccttg ccattcaata atcagcgttc caccgggtaa atccacctgc actttgttat
     9061 ctaacaagcc ttgcataatg ccgaccgcca ctgtgccgca cgcaccgcta ccacaggctt
     9121 gggtttcgcc tgctccacgc tcatacaccc gtaatttaac gtgattgcga ttcactactt
     9181 gcataaagct gatattcgcc cgttcaggaa aacgctcgtg gctttctagt aacggcccga
     9241 gttcatttac cggggcggtt ttcacatcat caacttgcag tacgcagtgc ggattcccca
     9301 ttgaaaccac gccacataac acggtttgta gctcggtgcg taaaatatag tttttctcaa
     9361 atttatttgc tgtaaaaggc acttgcgaag gttcccaaat cggttcgccc atattcacac
     9421 gcactttgcc gtcttcttgc aaacttagca ccattttgcc ttttgcggtg ctaacgtgaa
     9481 tgtctttttt gttggttaag cctttgagcg taacaaaacg ggcaaaacat ctcgccccat
     9541 tgccacattg cgacacttca ctgccgtctg cattaaaaat gcgatagtga aaatctaatt
     9601 cagggtcgta aggcggttca accaataaaa gttggtcgaa accgatacca cgatggcgat
     9661 cagaaagcgt acggatcatc tcttcggtaa ggtaaacgtt ttgggttaca ccatcaacca
     9721 cc
//
LOCUS       DANLVT010000092         9452 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.092, whole genome shotgun sequence.
ACCESSION   DANLVT010000092 DANLVT010000000
VERSION     DANLVT010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9452
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.092"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(123..407)
                     /locus_tag="PXC99_001880"
     CDS             complement(123..407)
                     /locus_tag="PXC99_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418312.1"
                     /translation="MIREVIDFIKNNKWYVLLVVLLLGLYFYQFHGGLSSDSEKWDHF
                     GSYIGGIFSAVTLLSVLHGMQLERKRFKEQKEEFENDKRVLEKRRRKEDF"
     gene            complement(502..1590)
                     /gene="hisB"
                     /locus_tag="PXC99_001881"
     CDS             complement(502..1590)
                     /gene="hisB"
                     /locus_tag="PXC99_001881"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018355873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HDL5418313.1"
                     /translation="MQPTLFIDRDGTLIDEPKTDFQIDSLEKLKFEKNVIPALLKLKG
                     KYRFVMVTNQDGLGTSSFPQADFDKPHNAMMALFNSQGIEFDDVLICPHKPEDGCDCR
                     KPHTKLLQKYIDRQLFDPANSFVIGDRATDVQLAENLGIRALQYHPEKLNWDLIAEKL
                     LGEAVTNIGERPKRFAEVIRKTKETDIKVQVWLDETGNNEISTGVGFFDHMLDQIATH
                     GGFRMNITTKGDLWIDEHHTVEDTALALGTALKQAIGDKRGIARFGFVLPMDESRAEC
                     AMDLSGRPFIKFKADFKRDKVGDFSTELTEHFFQSIAFTMLATLHIKAKGDNDHHKIE
                     SLFKVFGRTLRQCIRIEGNELPSSKGVL"
     gene            complement(1775..2842)
                     /gene="hisC"
                     /locus_tag="PXC99_001882"
     CDS             complement(1775..2842)
                     /gene="hisC"
                     /locus_tag="PXC99_001882"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDL5418314.1"
                     /translation="MTISQLSRKNIQALTPYQSARRLGGSGDVWLNANEYALSPNFDL
                     TDRTFNRYPEPQPQAVIEGYARYAGVAPENVLVSRGGDESIELIIRAFCEANDSILYC
                     PPTYGMYAVSADTCGIATKTVPLTADFQLDLAQIKANLEGVKVVFVCSPNNPTGNLIK
                     RSDLFELLQITAGKAIVVVDEAYIEFCPEARLVSELANFPHLAIIRTLSKAFALAGLR
                     CGFTLANAELIGVLQKVIAPYPLPVPVSDIAAQALSPQGIEQMKTRVAEVITLRAELQ
                     KNLENLPLVEQVFDSEANYLLFKCQDGQKVFKALWEQGIILRDQHKALGLQNCIRITV
                     GAREENLRVVEAITALSQFQR"
     gene            complement(2872..3312)
                     /locus_tag="PXC99_001883"
     CDS             complement(2872..3312)
                     /locus_tag="PXC99_001883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL5418315.1"
                     /translation="MSINISPLASKNLTEWKLLWQQYLDFYQVNLADDIIQSTWQKVS
                     ESENVKGFGAFVDNRMVGFVHIVIHPNTWNLTECCYLEDLFVLAEYRNQGIGKELIEY
                     IYRYAQEKGYNRVYWVTDKNNHQAQQLYNKLANDSGIIQYRKNF"
     gene            complement(3379..3756)
                     /locus_tag="PXC99_001884"
     CDS             complement(3379..3756)
                     /locus_tag="PXC99_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor"
                     /protein_id="HDL5418316.1"
                     /translation="MKNPIEIYQSQDGKTQVSVQFDKETVWLSLQQMADIFGRDKSVI
                     SRHLRNIYQEGELEREATVAKNATVQIEGAREVVRLKDYLVKGYALNERRLQERGIEF
                     EQVIGLLSQYTGCLSLVGGRKFA"
     misc_feature    complement(3778..3900)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            complement(4030..5019)
                     /gene="rsmC"
                     /locus_tag="PXC99_001885"
     CDS             complement(4030..5019)
                     /gene="rsmC"
                     /locus_tag="PXC99_001885"
                     /EC_number="2.1.1.172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1207)-N(2))-methyltransferase
                     RsmC"
                     /protein_id="HDL5418317.1"
                     /translation="MLSLESEVLERHLALFENKSVLLFGDVRDDFARQLQSRAEKVAV
                     FSSYFDYARHHSEVEFGLECGLSAELAVFYWTKNKQECQFQLLQWLSQCQAGQEMLII
                     GENRAGVRSVEKLLEPFGNIAKIDSARRCGLYHFELQTVPTFDCKKFWKSYRLQDLDV
                     FDLPAVFSSAELDNGTKLLLSTFDKADRLKGKVLDLGCGAGVIGATLKQQFPKIKLTM
                     SDIHAMALESGRRTLAENQLEGEVVASDVFSHINERFDLIVSNPPFHDGVDTAYRAVE
                     ELIFQAKNHLTKGGELRIVANAFLPYPDLLDKAFGKHDVLAKSTKFKVYSART"
     gene            5149..5571
                     /locus_tag="PXC99_001886"
     CDS             5149..5571
                     /locus_tag="PXC99_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit psi"
                     /protein_id="HDL5418318.1"
                     /translation="MNRRDLLLQEMGISQWVLTNPQVLKGDAQIRLNNAVKLVVVCEE
                     DHQHSRLFADILRALKLKNSEYQWLTGEQSQRLVFEHSPIFWLIQAEEQAVKMAKSFT
                     NQTAWKNESWQDLAKSTTKRQLWQQIDTFSAQFGEQRD"
     gene            5564..6001
                     /gene="rimI"
                     /locus_tag="PXC99_001887"
     CDS             5564..6001
                     /gene="rimI"
                     /locus_tag="PXC99_001887"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HDL5418319.1"
                     /translation="MIEQIQAEDFEQLFEIEQQAHLVPWSKGTLLNNQGEKYLNLKVV
                     EQNKIVAFAISHIVLDEATLFNIAVAPDFQGKGIGKRLLSELILQLQQRKLTTLWLEV
                     RESNHSARKLYDSLGFNEVTTRKNYYPTPNGSKENAVVMALYL"
     gene            complement(6050..7897)
                     /gene="typA"
                     /locus_tag="PXC99_001888"
     CDS             complement(6050..7897)
                     /gene="typA"
                     /locus_tag="PXC99_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HDL5418320.1"
                     /translation="MQNVDISKLRNIAIIAHVDHGKTTLVDKLLQQSGTFGETRGDVD
                     ERVMDSNDLEKERGITILAKNTAINWNGYHINIVDTPGHADFGGEVERVLSMVDSVLL
                     VVDAFDGPMPQTRFVTQKAFAHGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLGASD
                     EQLDFPIIYASALNGVAGLEHEDLAADMTPLYEAIVKHVQPPQVELDAPFQMQISQLD
                     YNNYVGVIGIGRIKRGSVKPNQAVTIVDSEGKTRQGRIGQVLGHLGLQRFEATEAFAG
                     DIVAITGLGELNISDTICDINAVEALPALSVDEPTVTMFFCVNTSPFCGQEGKFVTSR
                     QILERLNKELVHNVALRVEETSNPDEFRVSGRGELHLSVLIENMRREGYELAVSRPKV
                     IYREEDGKKQEPFEQVTIDIEEQHQGSVMEALGIRKGEVRDMIPDGKGRTRLEYVIPS
                     RGLIGFRNEFMTMTSGTGLLYSTFSHYDDVKPGEIGQRKNGVLISNATGKALAYALFG
                     LQERGKLMIDHGVDVYEGQIIGIHSRSNDLTVNCLQGKKLTNMRASGKDDAIVLTTPV
                     RFTLEQALEFIDDDELVEVTPQSVRIRKRLLTENDRKRASRTTTSTSTH"
     gene            complement(8082..8759)
                     /locus_tag="PXC99_001889"
     CDS             complement(8082..8759)
                     /locus_tag="PXC99_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HDL5418321.1"
                     /translation="MSIAENLSQIHQQIQQISEQYQRDNVRLLAVSKTKPVEAIQAAI
                     EAGQRAFGENYVQEAVEKIEFFANRPELEWHFIGPLQSNKTKLVAAYFDWIQTVDRLK
                     IAERLNEQRPADKAPLNVLIQINISDEASKSGIEPDEMLPLAQAISQLPNLKLRGLMA
                     IPKPESEPEQQKVAFRKMQLLFNRLQTEFDDIDTLSMGMSDDMQAAIECGSTMVRIGT
                     AIFGARR"
     gene            8830..9369
                     /locus_tag="PXC99_001890"
     CDS             8830..9369
                     /locus_tag="PXC99_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HDL5418322.1"
                     /translation="MLDLTKIKLVITDVDGVLTDGGMYYTDQGEVMKRFHVHDGLGVK
                     MLQSCGIKVAVLSGGDTALLRKRLEVLKIDLALLGKMEKRSACFELMQQAGVTPEQTA
                     YIGDDTLDLPAFEVCGIAIATRNALDYIKEKADWVLQKAGGEGAFREVSDQILEAQGF
                     GEIFKTADGFLTVAGKMAQ"
BASE COUNT         2551 a         2122 c         1980 g         2799 t
ORIGIN      
        1 caataaatcc tagcattttc aaatctatat gctgtaatta gcatatcata aacattatca
       61 atattacctt ctattgatga aattttaaga ttatgctgct ctaacatcat aaaaaatgta
      121 cgctaaaaat cttcttttct tcttctcttt tctaatactc ttttgtcatt ttcaaattct
      181 tctttttgct ccttaaatct tttacgttcc aactgcattc catgcaaaac actcaataaa
      241 gtaacagcag aaaatatacc accaatatag ctaccaaaat gatcccattt ttcactatct
      301 gaggataatc ccccgtgaaa ctgataaaaa tataatccta ataacaatac aactaacaga
      361 acataccatt tattattctt tataaagtca ataacttctc taatcatcaa tatatccttt
      421 ataacaagcg gtcaaaatcc ccaaaaactt tgcaaatttc aaccgcactt tcgggcgggt
      481 taaaacccgc ccctacggtg attataatac acctttactg cttggtagtt cattcccttc
      541 aatacgaatg cactgtctga gtgttctgcc gaagactttg aacaggcttt cgattttgtg
      601 gtggtcgttg tcgccttttg ccttgatgtg cagggtggcg agcatcgtga aggcgatgga
      661 ttggaagaag tgttcggtga gctcggtgct gaaatcgccc actttgtcgc gtttgaaatc
      721 cgctttgaac ttgatgaaag gtctgcctga taagtccatc gcacattccg cacggctttc
      781 gtccatcggc aacacgaagc cgaaacgggc gatgccgcgt ttgtcgccaa tcgcttgttt
      841 taatgcggtg ccgagggcga gggcggtgtc ttccaccgtg tgatgttcgt caatccacaa
      901 gtcgcctttg gtggtgatgt tcattctaaa accgccgtgg gtggcaattt ggtcaagcat
      961 atggtcgaaa aagcccacgc cggtgctgat ttcgttgttg cctgtttcgt ccagccacac
     1021 ttgcactttg atgtcggtct ctttggtttt acggataact tcggcaaagc gctttggtcg
     1081 ctcgccaatg ttggtgacgg cttcgcccag tagtttttca gcaatcaaat cccagttcag
     1141 tttttcaggg tgatattgca acgcccgaat gccaaggttt tccgccagtt gcacatcggt
     1201 agcacggtcg ccaatcacaa agctgttggc tgggtcgaac agttggcggt cgatatattt
     1261 ttgtagcagt ttggtgtgcg gtttgcggca atcgcaaccg tcttcgggct tgtgtggaca
     1321 aatcagcaca tcatcaaatt caatcccttg cgagttgaac aacgccatca ttgcattgtg
     1381 cggtttgtcg aaatctgcct gtgggaacga actcgtgcct aagccgtctt ggttcgtaac
     1441 catcacaaag cggtatttgc ccttgagttt gagcagggca ggaatcacgt ttttctcgaa
     1501 tttcagcttt tccaagctgt cgatttgaaa atcggttttt ggctcatcaa ttaacgtgcc
     1561 gtcacggtcg ataaaaaggg tgggttgcat tggtttctcc tgtatctgta tcttattcat
     1621 tactctcccc acacgccaag gcatatgggg ttaagcatta gtgagagact ttgcctctct
     1681 gtattcagtc ccaaagggac tgacttatgc gtaacctagt acggctatgc cgtgctaggc
     1741 tataaatgtc tcttaaaata ctgctcgtta aattctatct ctgaaattgg ctcagtgctg
     1801 taatcgcctc aaccaccctc aaattctcct ctctcgcccc caccgtaatc cgaatgcaat
     1861 tttgcaatcc taacgctttg tgttggtcac gcaaaataat gccttgctcc caaagtgctt
     1921 tgaagacttt ttgtccgtct tggcatttga ataggaggta gttggcttcg ctgtcaaaaa
     1981 cttgttctac aagcggtaag ttttccagat ttttttgcaa ttcggcacgc agggtgatga
     2041 cttccgccac acgggttttc atctgctcaa tgccttgtgg ggagagggct tgggcggcga
     2101 tgtcggaaac aggcacaggc agcggatacg gggcaatcac tttttgtaac acgccgatca
     2161 gctcagcgtt tgccaaggta aagccacaac gcaaacccgc caaggcaaag gctttggata
     2221 gggtgcggat aatcgccaaa tgtgggaaat tcgccagctc gcttaccaag cgagcttcag
     2281 ggcaaaattc gatgtaggct tcgtccacca ccacaatcgc tttgcctgcg gtgatttgca
     2341 aaagttcgaa caaatccgac cgcttgatta agttgcctgt cgggttgttc gggctgcaca
     2401 caaacaccac tttcacgccc tcgaggttag ctttgatttg ggctaaatcc aactggaaat
     2461 cggcggttaa aggcacagtt ttggtcgcaa tgccacaggt gtcggcactc acggcgtaca
     2521 ttccgtaggt tggtgggcag tagagaatgc tgtcgtttgc ctcgcaaaag gctcggataa
     2581 tcagctcaat gctctcatcg cccccacggg aaaccagcac gttttcaggt gcaacgcctg
     2641 catatcgggc gtaaccttca atcaccgcct gcggttgagg ttcagggtag cggttaaaag
     2701 tgcggtcggt taaatcaaag tttggcgaaa gggcatattc attggcattc agccacacat
     2761 cgccactacc ccccaaacgc cgtgccgatt ggtaaggggt gagagcttga atgtttttac
     2821 gggaaagttg tgaaattgtc atattgtgtt cctgtataat ttatacatag tttagaaatt
     2881 ttttcgatat tgaataatac cgctatcatt agctaattta ttataaagct gttgtgcttg
     2941 atgattgttt ttatctgtta cccaatatac tcggttatat cctttttcct gtgcatatcg
     3001 ataaatatat tcaattaatt cttttcctat gccttggttg cgatattcag ctaaaacaaa
     3061 taaatcttcc aaataacagc attcagttaa attccaagta tttgggtgaa tcacaatatg
     3121 aacaaaacca accattctgt tatcaacaaa agccccaaat ccctttacat tttcactctc
     3181 tgaaactttc tgccaagttg attgaataat atcatctgct aaattcactt gataaaaatc
     3241 taaatattgt tgccacaata gtttccattc agtgagattt ttggaggcta acggcgaaat
     3301 attaatactc atattttttc ctgttatgct tttaataaaa taaagtgttc aatcagttta
     3361 atcatcagtt ctttttgttc aggcaaactt tctgccacca acaaggctaa gacaaccagt
     3421 gtattgactg agcaaaccaa tcacctgctc aaactcgata cctcgttcct gcaaacggcg
     3481 ttcgttaagg gcatagcctt tcaccagata gtcttttagg cgaacgactt ctctagcacc
     3541 ttcaatttga actgttgcat tttttgcaac agttgcctca cgctccagtt caccttcttg
     3601 gtagatattt cgtaagtgcc gagaaataac agacttatct cgtccaaaaa tatctgccat
     3661 ttgctgtaaa cttagccaca ccgtttcctt atcaaactgc acggaaactt gggttttgcc
     3721 gtcttggctt tggtaaattt caatcgggtt tttcatatta ttcccaaatt ttatctataa
     3781 aaaaatctct cgaaagttgc cttccgagag atctttattg atttgctaca cttgctcgga
     3841 agagttatct tccgcacaca ccaaatgccc gaaagatatc aggttaaagt gtggtggtga
     3901 tgtaaagtgt agtttaaatt cattgcatta ctccaaaaca gtatgaacag aatttacgtc
     3961 aagccggcag aaatatcaag cactttttta agcaaatacc ggctttttta taaccgtttg
     4021 ttctgcctat tatgttcttg cggaatacac cttaaacttg gtggattttg ccagtacgtc
     4081 gtgtttgccg aaggctttat cgagcaaatc tgggtaaggc aagaatgcgt ttgcgacaat
     4141 tcgcagctca ccgcctttgg ttaggtgatt tttagcttgg aaaatcaact cctccaccgc
     4201 tcggtaggcg gtatcgaccc cgtcgtggaa tggtgggttg gagacaatta aatcaaaccg
     4261 ttcattaatg tgagagaaca catcacttgc taccacttcc ccctctaact gattttccgc
     4321 caaagtacgt ctgccggatt ccaacgccat tgcgtgaata tcgctcatcg tcagtttgat
     4381 tttcggaaat tgttgtttga gcgttgcccc aatcacgcca gccccacagc ctaaatctaa
     4441 cactttgcct tttagcctgt ctgctttgtc gaaggttgaa agcaataatt tggtgccgtt
     4501 atccagctcc gccgagctaa aaaccgctgg tagatcgaac acatctaagt cttgcaagcg
     4561 gtaggatttc cagaattttt tgcaatcgaa tgtcggcacg gtctgtagct caaaatggta
     4621 taaaccacaa cggcgtgcag agtcgatttt ggcaatattg ccgaacggtt cgagcagttt
     4681 ttctaccgaa cgaacaccag ctcggttttc gccgataatc aacatttctt gccctgcttg
     4741 gcattgcgac agccattgta gcagttggaa ttggcattcc tgcttgttct tcgtccaata
     4801 aaacaccgct aactcggcac tcaaaccaca ttctaagcca aattcaacct cactatggtg
     4861 gcgtgcgtaa tcaaaatagc tactgaatac cgcaaccttt tccgcacgag attgcagctg
     4921 gcgggcaaaa tcatctcgca catcgccaaa taataacacc gacttgtttt caaataacgc
     4981 caaatggcgt tcaagtactt cgctttctaa agagagcatt ttcttacctt atctaaaaaa
     5041 tttagcgtga atataccgaa tttaagtaca gaaatcttga attttttgaa aaaagtttct
     5101 gttcaagcgg agttttgata ctatttgcaa aatttgatga ggttttaaat gaatcgtcgt
     5161 gatttactgt tacaggaaat gggtatttcg caatgggtgc taaccaatcc ccaagtgcta
     5221 aaaggcgatg ctcaaatccg cctaaacaat gcggtaaaat tggtggtagt gtgtgaggaa
     5281 gatcaccaac acagccggct ctttgccgat attctgcgtg ctttaaagtt aaaaaacagc
     5341 gaatatcaat ggctgactgg cgaacaatca caacgtttgg tgtttgagca ttcgccgatc
     5401 ttttggctga ttcaagcgga agaacaagcg gtcaaaatgg caaaaagttt tactaatcag
     5461 accgcttgga aaaacgagtc ttggcaagat ttagccaaat ctacgaccaa acgccaactt
     5521 tggcaacaaa ttgatacttt ttcggcacaa tttggagaac agcgtgattg agcaaattca
     5581 agcggaagat ttcgagcagt tatttgaaat tgagcaacaa gcccatttag tgccgtggtc
     5641 aaaggggacg ttattaaata atcagggtga aaaatacctg aatttaaaag tggtagagca
     5701 aaacaaaatt gtggcttttg ccattagtca tatcgtgcta gatgaagcaa ccttatttaa
     5761 cattgcagtt gctcctgatt ttcaaggcaa aggcattggc aagcggttac tttccgaatt
     5821 aattttgcaa ctgcaacaac ggaaactcac caccctgtgg ttggaagtgc gagaatccaa
     5881 ccattctgcc agaaaactct acgattcact cggttttaat gaagttacca cccgcaaaaa
     5941 ctattacccc acgccaaacg gtagcaaaga aaatgcggtg gtaatggcgt tatatttgta
     6001 gggagaattt aaaaccaaaa gagcgacctc agtcgctctt ttttatcagt tagtgcgtgc
     6061 tggtactggt tgtagtacgg cttgcacgtt tccggtcgtt ttcagttaat aaacgtttac
     6121 gaatacgcac cgattgtggt gttacttcca ctaattcgtc atcgtcaata aactctaacg
     6181 cttgttctag agtgaaacgc accggtgtgg ttaaaacgat ggcatcgtct ttacctgatg
     6241 cacgcatatt ggttaatttc ttaccctgta agcagtttac ggttaaatcg tttgaacggc
     6301 tgtgaatccc gataatttgc ccttcatata catcaacacc gtggtcgatc attaattttc
     6361 cacgctcttg taagccaaat aatgcgtatg ctaatgcctt acccgttgcg ttagaaatta
     6421 acacaccgtt tttacgctga ccgatttcgc ccggttttac gtcatcatag tggctgaatg
     6481 tagagtaaag taaaccagta cctgaggtca tcgtcataaa ttcgttacgg aaaccgatta
     6541 agccacggct tgggatcaca tactctaaac gggtacgacc tttgccgtcc ggaatcatat
     6601 cacgcacttc acctttacgg ataccaagtg cttccatcac tgaaccttgg tgttgctctt
     6661 cgatatcaat cgtcacttgc tcaaacggct cttgtttttt gccgtcttct tcgcggtaga
     6721 ttactttcgg gcgagacact gctaactcgt aaccttcacg acgcatattt tcgattaata
     6781 ccgataagtg taattcgcca cgacctgaca cacggaattc gtctgggttc gaagtttctt
     6841 ccacacgcaa tgccacgttg tggactaatt ctttgtttaa acgctcaaga atttggcgtg
     6901 aagtcacaaa tttaccttct tgaccgcaga atggcgaggt gtttacgcag aagaacatcg
     6961 ttaccgttgg ttcatcaacg cttaatgctg gtaaagcctc tactgcgtta atatcacaaa
     7021 tagtatctga aatatttaat tcgcctaaac cagtaatcgc aacaatatcg ccagcaaagg
     7081 cttctgttgc ttcaaaacgt tgtaaaccta aatgccccaa cacctgaccg atacgacctt
     7141 ggcgagtttt gccttcgcta tctacaatcg ttaccgcttg gttaggtttc accgaaccac
     7201 gtttgatacg tccaataccg ataacgccca catagttgtt gtagtctaat tgcgaaatct
     7261 gcatttggaa tggtgcatct aattccactt gtggtggttg aacgtgtttg acaatcgctt
     7321 cataaagtgg ggtcatatct gccgctaggt cttcgtgttc taagcctgct acaccattta
     7381 aggctgaagc gtagataatt gggaaatcta actgctcatc acttgcacct aaatttacaa
     7441 acaagtcgaa cacttgatcc accacccaat cagggcgagc acctgggcgg tcaactttat
     7501 tgatcactac gattggtttt aaaccgtgag cgaacgcttt ttgcgtgacg aaacgggttt
     7561 gcggcatcgg gccatcaaag gcatcaacca ctaacagaac agaatctacc attgaaagta
     7621 cacgctcaac ctcaccaccg aagtcagcgt gccctggggt atctacgata ttgatgtgat
     7681 aaccattcca gttaattgcc gtattttttg caagaatggt aatgccacgc tctttttcaa
     7741 gatcgttgga atccattaca cgctcatcaa cgtcaccacg agtttcacca aaggtgcctg
     7801 attgttgtaa aagtttatca accaaggtgg ttttaccgtg gtcaacgtgg gcaataattg
     7861 caatgttacg caattttgaa atatctacat tttgcattgg aatatcttta agttaagtca
     7921 aaataaaaac tctcgcccat caaaactggc gagagtcaag aaattaggag gcgtaattat
     7981 acagactttt tccgctgttg gctacaaaac aagcggtgga atttgcaaag tttttggcga
     8041 atttgaccgc ttgtatcagc tttatgtaaa aactcagctg gctaacgtct cgccccaaaa
     8101 atcgcagtcc caatccgcac cattgtcgag ccacattcaa tcgccgcttg catatcgtcc
     8161 gacatcccca ttgaaagggt atcaatgtcg tcaaattctg tttgcaagcg gttaaaaagt
     8221 agctgcattt tgcgaaaggc aactttttgt tgctctggct cgctttctgg tttgggaatg
     8281 gccattaagc cccgcagttt caaattcggt aattgagaaa tcgcttgggc aagtggtagc
     8341 atttcatctg gttcaatgcc cgatttcgag gcttcatcgc tgatattaat ttgaatcagc
     8401 acgttgagcg gggctttatc cgctgggcgt tgttcgttta aacgctcggc aatttttaat
     8461 ctatccaccg tttgaatcca atcaaaatag gcagcgacca atttggtttt atttgattga
     8521 agtggcccaa taaaatgcca ttctaattcg gggcgatttg caaaaaattc gattttttcg
     8581 accgcttcct gcacataatt ttcgccaaat gcacgctgcc ctgcctcaat cgccgcttga
     8641 atcgcctcaa ctggtttagt tttggagacg gctaacaaac gcacgttatc tcgttgatat
     8701 tgttcggaaa tttgctgaat ttgttgatgg atttgcgata aattctcggc aatcgacatt
     8761 tcggttcctt tggtaaacgg aggtaaaaaa gctataatgg taaaatcata ccatatttga
     8821 ggcaaaaaaa tgttagatct caccaagatt aaattagtga ttaccgatgt ggacggcgtg
     8881 ctaaccgatg gcggaatgta ctacaccgac caaggcgaag taatgaaacg tttccacgtt
     8941 cacgatggtt taggcgttaa gatgttacaa agttgtggca ttaaagtggc agtactctcg
     9001 ggcggcgata cggctttgct ccgcaaacgg ttagaggtgc tgaaaattga tctcgctttg
     9061 ttaggcaaaa tggaaaaacg ctccgcctgc tttgagctaa tgcagcaagc cggtgttacc
     9121 cctgagcaaa cggcttacat tggtgatgac accttagatt taccggcttt tgaagtgtgt
     9181 ggcattgcga ttgcaacccg taacgccctc gattacatca aagaaaaagc agattgggta
     9241 ttgcaaaaag ccggtggtga aggggcgttt cgtgaagtct ccgaccaaat tttggaggct
     9301 caaggattcg gtgaaatttt taaaaccgca gatggttttt taacggtagc ggggaaaatg
     9361 gctcagtaga ctcttcaagc agttaaattt cattttattt ttgcgatctg catcgaaaaa
     9421 atgtatttct aatctgattt tcaaattact gt
//
LOCUS       DANLVT010000093         9416 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.093, whole genome shotgun sequence.
ACCESSION   DANLVT010000093 DANLVT010000000
VERSION     DANLVT010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9416)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9416)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9416
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.093"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            82..360
                     /locus_tag="PXC99_001891"
     CDS             82..360
                     /locus_tag="PXC99_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418323.1"
                     /translation="MEILFILLGLIGFGALLAIGFTTFAAIFGVVTTVFLSLLSLLAN
                     MVGLSIIVILISLYVLLPLNTFILIALIFSAILGFLCWYHSDRQSVNQ"
     gene            complement(411..869)
                     /locus_tag="PXC99_001892"
     CDS             complement(411..869)
                     /locus_tag="PXC99_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDL5418324.1"
                     /translation="MSEPIEQVKTAFDSLLNNISKPRRRLMYQQIGRELARSQRRRIK
                     AQQNPDGSAYEPRKKPKKGVKSKIKSGKMFDKITQPRFMRLRLESEGVSLGYEGGDAV
                     IARIHQQGLIGRVRKDWDLKVKYASRELLGFTDDDLQMIEDYMINILAGS"
     gene            complement(862..1347)
                     /locus_tag="PXC99_001893"
     CDS             complement(862..1347)
                     /locus_tag="PXC99_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5418325.1"
                     /translation="MIKPDRLRAVLTQTIDIFQANPEKLILQYDKGKIKSKGSQSHSF
                     EYHYDLELIVVDFPYHPDVLFVPVLNFVRNEQWELLQNPELQDKIEFEIDHNNHESYD
                     IYIRLPLTERVIVKEQDGHLTATHADEPNLADVSPFTRLTEYEVYLKDELIYQWAEPN
                     E"
     gene            complement(1344..1565)
                     /locus_tag="PXC99_001894"
     CDS             complement(1344..1565)
                     /locus_tag="PXC99_001894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA family transcriptional regulator"
                     /protein_id="HDL5418326.1"
                     /translation="MSDQIDRANELAEKAREAALAKILQNQTACTSLFECEDCGEPIP
                     EKRREMVIGCTRCIECQTIYEHKQKGYRR"
     gene            complement(1714..2169)
                     /locus_tag="PXC99_001895"
     CDS             complement(1714..2169)
                     /locus_tag="PXC99_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418327.1"
                     /translation="MIVKLCQMTNKHFSPLMIVLVLVGVLANFVQFRQNESLKADLQA
                     RTTQNQLIQADNRNLANQLENSQIQLEAYQKQVDDLNQKVLAKMKQAEQRSNEILNEL
                     EKHKKWADSAVPPSVGKLLNQRKRAVSHPQIEPDNLSEKAGVPNTGNRD"
     gene            complement(2166..2732)
                     /locus_tag="PXC99_001896"
     CDS             complement(2166..2732)
                     /locus_tag="PXC99_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HDL5418328.1"
                     /translation="MSKSVKVGVFVCSVAAIIGTVKQYYSSEIRTSETGLAIIGNAEG
                     CRRDPYKCPADVITVGIGSTEASGEKINVNHKYTDKEIAERWIKDLKIAERCINRYFN
                     GDKMNENQFSAMVSAAFNMGCYNLRFYPNENGKYIQTTIHKYAMAKDFKAMCNRIPDF
                     NRSGGKVLRGLKIRREKEKALCLGQEVK"
     gene            complement(2725..2931)
                     /locus_tag="PXC99_001897"
     CDS             complement(2725..2931)
                     /locus_tag="PXC99_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin"
                     /protein_id="HDL5418329.1"
                     /translation="MHKTEQASYFGAIFGFFGSLTLSDWGVVVSILVAILTLLLNWAY
                     RAKEYKLKEREFELKLQNQGKKNE"
     gene            complement(2937..3149)
                     /locus_tag="PXC99_001898"
     CDS             complement(2937..3149)
                     /locus_tag="PXC99_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HDL5418330.1"
                     /translation="MNTLIARQDDTLDELIFRHYGQTAGLVEQALEYNPELAHLPRLP
                     IGTVVTMPDIESRFATVAKSSVQLWD"
     gene            complement(3146..3661)
                     /locus_tag="PXC99_001899"
     CDS             complement(3146..3661)
                     /locus_tag="PXC99_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head completion/stabilization protein"
                     /protein_id="HDL5418331.1"
                     /translation="MEQRNHVISIPKVNGYESSKNAIKPTAESDETITNNGFFPNIEL
                     LEVRNAMRIDGTVINERLKQAVIEAMATVNADLKAYRLNAEQAQKANLQACDDEQING
                     ESVLVYKYKRAVYCLAVANLYERYRSYDSTKDGHDKAEELESTAGDLKRDYHFAVRDI
                     LGENRMISELI"
     gene            complement(3773..4462)
                     /locus_tag="PXC99_001900"
     CDS             complement(3773..4462)
                     /locus_tag="PXC99_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase endonuclease subunit"
                     /protein_id="HDL5418332.1"
                     /translation="MRMSPARAHFLRKTAESESATPNRENLEGLQGYDLVLAQLKAHQ
                     RQLKKIQSIERKIEFKRNNFEQYRPWVEGSLAKGSGVQDTVITTMLIWSIDIGDYPTA
                     LAIAQYVLMHDLAMPEQFERTPATALVEELAEAAKKARDQKQPFEAAVLKQANDLTAE
                     FDMPDPVRAKLLRELGELIQEAEPQTALEHYQRAIALDPQCGAKGLRDKLEKQLAKQA
                     EEPKPAEEQNE"
     gene            complement(4472..5500)
                     /locus_tag="PXC99_001901"
     CDS             complement(4472..5500)
                     /locus_tag="PXC99_001901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein, P2 family"
                     /protein_id="HDL5418333.1"
                     /translation="MKDLTLEKYNAYLARQAELNNLPFNALATGIKFTVQPSVQQKLY
                     EKVRESSDFLKSISFVFVDEQTGETLGLDSAHTVASTTDTSGDGERKTTSIAKLVKQT
                     YHCQQINFDTHINYKQLDMWAKFPDFQQKVANVAAKQRKRDLIMIGFNGTSRAATSDR
                     NSNPLLQDVAKGWLQKMREDAKERVMNGESTDNQVLVGKGQEYANLDALVMDATEELI
                     DEWHRDDTDLVVITGRKLLADKYFPIVNQQNAPTEELAADIVISQKRIGGLKAVRVPF
                     FPANAILITKLENLAIYVQEGTTRKHIENVPKKDRIETYESENIDYVVEDYGCAALIE
                     NITLKDKE"
     gene            complement(5514..6341)
                     /locus_tag="PXC99_001902"
     CDS             complement(5514..6341)
                     /locus_tag="PXC99_001902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPO family capsid scaffolding protein"
                     /protein_id="HDL5418334.1"
                     /translation="MTTKSKWFVVATEGATTDGREISREWLTQIEENYDPKNNYGARI
                     NLEHFRWRWFEKDDPHSYSYGDVLAVKTEEREDGKLQLLAEIAPTEALVKLVKDKQKV
                     YTSVEIDLNFADTGEAYLVGLAVTDTPASLGTEYLTFCAGATHNPLADRKQKPENLVS
                     EAVEANLEFTAEPEKGAWLEKFKAMFTKAKTDNDGKFAEHEKAMELLAEQFSKVSTEN
                     DRLQTELSTLQIEFTELQKQAGEFAEKFAKLEQEPSANYTPRPKATGAKAGDVQTDF"
     gene            6491..8293
                     /locus_tag="PXC99_001903"
     CDS             6491..8293
                     /locus_tag="PXC99_001903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase ATPase subunit family protein"
                     /protein_id="HDL5418335.1"
                     /translation="MENENTITEYEVLAANPLHDKREAQSKYWAGYTVTEISRQLNIP
                     VSTIASWKKREKWDEISPVGRVEATLESRLNLLIMKESKNNNDYKEMDALRRLLESTA
                     RIKKYSNGGGNEADLNPNIKNRNKGDRKKPEQNAISEEQAELLINGFLDGMFHYQKKW
                     HEAGLTHRIRNILKSRQIGATYYFAHEALVDALVTGRNQIFISASKKQALQFRAYIVA
                     YAKRVADVELKGETITLPNESQLIFLGTNSKTAQSYHGNLYFDEIFWVNRFEEIRKVA
                     AGMASQKQYRITYFSTPSSITHSAYLLWSGKLFNRKRPKAEQVEIDISHANLKNGKKC
                     GDGQWRQIVNIYDAEAGGCNLFDIEQLKLENSPDEFEQLFMCEFIDDNQSVFKFTMMQ
                     RCLVDSMEVWRDYVFTDGYQRPFGNKEVWVGYDPSYTGDRSALVVIAPPKVDGGKFRL
                     LEYRTFKGADFAGQAAEIVAICAKYNVTRLAIDTTGLGVGVYEIVKKERPDAVALTYN
                     VELKSKMVLKGLDIISKGRFEFDSMHAVEVGASFMAIKKQITNSGRQVTYVADRSEEA
                     SHADLAWACLQVFINEPFDGKLEETTGTVDFLDD"
     gene            8302..9342
                     /locus_tag="PXC99_001904"
     CDS             8302..9342
                     /locus_tag="PXC99_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HDL5418336.1"
                     /translation="MKKQLRKNLTQNDRLQPQAQTEIFSFGDPIPVLDRADILNYLEC
                     SAMYEKWYNPPMSFDGLAKSLRSSTHHESAIITKANILLSTCEVDSRYLSRRDLSSFV
                     KDYLVFGNAYFEVVRNRLGQVQRIESPLAKYVRKGLEAGQFYYVPQRFDHQEHEFAKG
                     SIYHLLEPDINQDIYGLPQYLSALQSAWLNESATLFRRKYFLNGAHAGFVFYMSDASQ
                     KQEDVENIRQQLKQSKGVGNFKNLFVHAPNGKKDGIQIIPIADVSAKDEFFNIKNVSR
                     DDVLAAHRVPPQLMGIIPNNTGGFGNVADAAEVFFITEIEPLQERLKEFNQWLGQEVI
                     KFKPSKLLQRTQ"
BASE COUNT         2329 a         2066 c         2115 g         2906 t
ORIGIN      
        1 ctaacgcaga aagaactact tgaattttta aattattgct catattataa ccttaattgt
       61 agtatggcta agggaaaatc tatggaaatc ttatttatct tacttgggtt aattggtttc
      121 ggtgcattat tggcaatagg ttttacaacc tttgctgcca tttttggtgt agttacaaca
      181 gtatttttaa gcctgctttc attattggca aatatggttg ggctctctat tatcgttatt
      241 ctgatctcac tttatgtatt gttaccactc aatactttta ttttgatagc attgattttt
      301 tcagctattt tagggtttct ttgttggtat cattcagata gacaaagcgt taatcaataa
      361 ctcaagcggt caaaattgac cgcttttttg caaaagtttc tattcatcat ttagctacca
      421 gccaaaatat taatcatata atcctcaatc atctgcagat cgtcatcagt aaaacctagc
      481 aactcacggc tggcatattt cacttttaaa tcccaatctt tccgcactcg tccgattaag
      541 ccttgttggt ggattcgggc gatgaccgca tcaccaccct cataacctaa gctgacacct
      601 tcgctttcaa ggcgtagccg cataaaacgt ggctgggtaa ttttgtcaaa catcttgccc
      661 gatttaattt tgctttttac ccctttcttc ggctttttgc gtggctcgta tgccgagccg
      721 tctgggtttt gttgtgcttt aatccgtctg cgttggcttc gggcaagctc tcgcccgatt
      781 tgttgataca tcaaccgtct gcgaggtttg ctgatattat tcagtaagct atcaaaggcg
      841 gtttttactt gttcgatcgg ttcactcatt tggctctgcc cactgataaa tcagctcgtc
      901 tttgaggtaa acctcatatt cggttaaacg ggtaaatggc gaaacatcgg caaggttcgg
      961 ttcatcggcg tgggttgcag ttaggtgtcc gtcttgctct ttcacgatca cccgctcggt
     1021 aagcgggagg cggatataaa tatcgtagct ctcgtgattg ttgtggtcga tttcaaattc
     1081 gattttgtct tgtagttccg ggttttgcag tagctcccat tgttcatttc gcacaaaatt
     1141 tagcactggc acaaacaaca cgtcggggtg atacggaaaa tccaccacga ttagctctaa
     1201 atcgtagtgg tattcaaacg aatggctttg gctccctttg cttttaattt tgcctttgtc
     1261 atattgcaaa atcagctttt cggggttagc ttggaatata tcaatggttt gtgtgagcac
     1321 ggctcgcaag cgatcaggtt taatcatctg cggtagcctt tttgcttatg ctcgtaaatg
     1381 gtttggcact caatgcaacg ggtgcaacca ataaccattt ctcggcgttt ttcggggatt
     1441 ggctctccgc aatcctcaca ctcaaaaagg ctggtgcaag cggtctgatt ttgcagaatt
     1501 tttgcaagtg ccgcctctct ggctttttcg gctaattcgt tggctcggtc gatttggtct
     1561 gacatagtcg tccttattaa aaaaggcgat cactcgcctt ggttgatttt gttgtattgc
     1621 tcgatgcaat gctcgaacga ttcgatgatg acttggcata cctcaatggt gttgagtctt
     1681 ttgtctagtg ctttgacaag atcaccgttg gtgttaatct cggttgccgg tgtttggcac
     1741 tccagccttt tcggacagat tatcgggttc gatttgaggg tgtgataccg cacgctttcg
     1801 ttggttgagc agcttgccaa cgctaggagg cacggcagaa tcagcccact ttttatgctt
     1861 ttccagttcg ttaaggattt cattacttcg ttgctccgct tgtttcattt tggctaacac
     1921 tttctgattg aggtcgtcca cctgtttttg atacgcctca agctgtattt ggctgttttc
     1981 aagctgattg gctaaattgc ggttatcggc ttgaatcagt tggttttgcg tggtgcgtgc
     2041 ctgtaagtct gctttcaggc tttcgttttg gcgaaactgc acgaaattgg ctaatacgcc
     2101 aactagcacc agcacaatca ttagcgggct gaaatgctta ttggtcattt ggcagagttt
     2161 gacaatcatt taacctcctg cccgagacac agggcttttt ctttttctcg gcggattttc
     2221 aaacctctta gcactttacc tcccgagcgg ttaaaatcag gtatcctatt acacatcgct
     2281 ttaaaatcct tagccatagc atatttatgg attgttgtct gaatgtattt accattttca
     2341 tttggataaa atctaaggtt gtaacatccc atattaaatg ctgctgatac catcgccgaa
     2401 aactgatttt cgttcatttt gtcgccatta aaataacgat tgatacacct ttcagctatt
     2461 ttaagatctt ttatccaacg ctcggcaatc tctttatcgg tgtatttgtg attgacatta
     2521 attttctcac cgcttgcctc ggttgagcca atgccaaccg tgattacatc ggcagggcat
     2581 ttatacggat cacgtctgca accctccgca ttgccgataa tggctaagcc tgtttcgctg
     2641 gtgcggattt cggagctgta atattgcttt accgtcccga taatagctgc aacggagcag
     2701 acaaatacgc caacttttac acttttactc attctttttc ccttggtttt gtagctttag
     2761 ctcaaattct cgctctttca gtttgtattc tttggctcgg tatgcccaat taagtaataa
     2821 ggttaaaata gctaccagaa tactcactac caccccccaa tcagataggg tgaggctacc
     2881 aaaaaagcca aaaattgccc caaaatagga ggcttgttca gttttgtgca tattttttaa
     2941 tcccaaagtt gcacgctgga tttcgccacc gttgcaaaac ggctctcaat atccggcatt
     3001 gtaactacag tgccgatcgg caaacgtggc aaatgagcca gttcggggtt atattctaag
     3061 gcttgctcga ctaagcctgc cgtttgcccg tagtgccgaa agatcagctc gtctaaggtg
     3121 tcgtcttggc gtgcaatcaa ggtgttcata tcaattcact aatcattcgg ttttcgccca
     3181 aaatatcacg cacggcaaag tggtaatctc gtttcaaatc accggcggta ctttctagct
     3241 cttcggcttt gtcgtggccg tctttggtgc tgtcataact gcggtagcgt tcgtaaaggt
     3301 tcgctactgc aaggcaatag accgctcgtt tatatttgta aaccagcacg ctttcgccgt
     3361 tgatttgctc atcatcacag gcttgcaagt tcgctttttg tgcttgctct gcattgaggc
     3421 gataggcttt taagtcggca ttgactgttg ccattgcctc aatcaccgct tgttttagcc
     3481 gctcattaat gaccgtgcca tcaatccgca ttgcatttcg cacctccagt agctcaatgt
     3541 tcggaaaaaa gccattattg gtgatagttt catcagattc tgcggtgggc ttgatcgcat
     3601 ttttgctgga ttcatagcca ttcactttcg ggatactaat aacgtgattg cgttgttcca
     3661 taaggtttcc gtaaggtaag gggtggggat tttaaaaggg tgcaaaatga ataaatcacc
     3721 ctttaaaatc cgccccttgg ctggcgtgga tacgctctat ttcggctttc gcctactcat
     3781 tctgttcttc tgctggtttc ggctcttcgg cttgtttggc aagttgcttt tctaacttgt
     3841 ctcgcaagcc ttttgcaccg cattgagggt cgagggctat cgctctttga tagtgttcaa
     3901 gggcggtttg tggctctgcc tcttggatta gctcgcctag ctcacgcagt aatttggctc
     3961 gcactgggtc gggcatatca aattcagcgg tgaggtcgtt tgcctgtttc agcacggctg
     4021 cctcaaacgg ctgtttttgg tctcgggctt tctttgccgc ctctgcaagc tcttcaacca
     4081 aggcggttgc cggtgtgcgt tcaaactgct ccggcattgc caaatcgtgc attaaaacgt
     4141 attgagcaat cgcaagggcg gttgggtaat cgccaatatc aatcgaccaa atcagcattg
     4201 tggtgataac cgtgtcttgc acaccggagc ctttggcaag ggagccttcc acccaaggtc
     4261 ggtattgctc aaaattgttg cgtttaaact caatctttcg ctcaatcgac tggattttct
     4321 ttaattggcg ttgatgggct ttaagttggg ctaaaactaa gtcatagcct tgtaagcctt
     4381 caaggttttc tcggtttggg gttgcagact cactttctgc ggttttccgc aaaaaatgag
     4441 cccgagccgg actcattcgc atagttccac cttactcttt atctttgagt gtaatgtttt
     4501 cgattaatgc cgcacagcca taatcttcga caacgtagtc gatattttct gattcgtagg
     4561 tttcaatacg gtcttttttc ggcacgttct caatatgctt gcgggttgtc ccctcttgca
     4621 catagatggc taaattttcc agcttagtga ttaaaatcgc attcgccggg aagaacggca
     4681 cacgcaccgc ttttaagccc ccaatgcgtt tttgtgagat cacaatatca gcggcaagtt
     4741 cttcggttgg tgcgttttgc tgattcacaa tcgggaaata tttatccgca agcaacttgc
     4801 gaccggtaat caccactaaa tcggtgtcat cacgatgcca ttcatcaata agttcttcgg
     4861 tggcgtccat tacgagtgcg tcaagattgg catactcttg acctttgccg actaaaactt
     4921 ggttgtctgt gctttcgcca ttcattacac gctctttggc atcttcacgc attttctgca
     4981 accagccttt tgccacatct tgcaataacg ggttgctgtt gcgatcactg gttgccgcac
     5041 gacttgtgcc gttaaagccg atcataatta agtcacgttt gcgttgtttt gccgcaacat
     5101 tcgccacttt ttgctgaaaa tcagggaatt tcgcccacat atccaactgt ttataattga
     5161 tatgggtgtc aaaattgatt tgttggcagt ggtaggtttg ttttaccaac ttcgcaatag
     5221 aggtggtttt gcgttcaccg tcaccgctgg tatcggtggt gctggccacg gtgtgagctg
     5281 aatctaaacc taaggtttca ccggtttgct catcaacaaa cacaaagctg atagatttta
     5341 agaaatcaga gctttcacgc accttttcat acagcttttg ctgtaccgat ggttgcactg
     5401 tgaatttaat gccggttgcc aatgcattaa acggcaagtt gtttaattca gcttggcgtg
     5461 caaggtaggc gttatatttt tcaagggtta aatctttcat tcgtgatcct caattaaaaa
     5521 tcggtttgta catcacctgc tttcgcacca gtggcttttg ggcgtggggt gtaattggca
     5581 gacggttctt gttccagttt tgcaaatttt tcggcaaatt cgcccgcttg tttttgcaat
     5641 tcggtaaatt cgatttgcaa tgtgcttagt tcagtttgca agcggtcgtt ttctgtcgaa
     5701 actttgctaa attgctcagc taacagttcc attgcctttt cgtgttcggc aaatttgccg
     5761 tcattgtcgg ttttggcttt ggtaaacatc gccttaaatt tctccagcca cgcacctttt
     5821 tcaggttcag cagtaaattc taaattcgcc tctactgcct cactcacaag gttttccggc
     5881 ttttgcttgc ggtctgctag tgggttatgg gttgcaccgg cacaaaatgt gaggtattcc
     5941 gtgccgaggc ttgccggtgt atcagtcacc gccaaaccaa ctaaatacgc ctcgcctgtg
     6001 tccgcaaaat taaggtcaat ttccacagag gtataaactt tctgcttgtc tttgactaac
     6061 ttcactaagg cttcggttgg ggcgatttct gccagtaact gtaatttgcc gtcttcacgt
     6121 tcttctgttt taaccgctaa cacatcgcca tagctgtaag aatgcgggtc atctttctca
     6181 aaccaacgcc agcggaaatg ctcaaggtta atacgagcac catagttatt tttcgggtcg
     6241 taattttctt caatctgcgt gagccattca cgactaattt cgcgtccatc tgtagttgct
     6301 ccttccgttg ctaccacaaa ccatttggat tttgttgtca tctgtttttc cttgctctaa
     6361 aggggagggg taaaaatcgg atttatgatc ttgttttgtg ccggcggttt caatgtgtgg
     6421 tacgtgttaa atcgggtttc acagcctcaa gcaaatgctt aaacaaggtg gatttttgat
     6481 aatcgcacct atggaaaatg aaaatacaat cactgaatac gaggtgttgg ctgccaaccc
     6541 tctacacgat aaacgagagg ctcaatcaaa gtattgggca ggttacaccg tgaccgaaat
     6601 ttctcgtcag ctaaatattc ccgtctctac cattgcaagt tggaaaaagc gagagaaatg
     6661 ggacgaaatc agccccgttg gacgtgtgga agccacactg gaatcacggc tgaatttgct
     6721 gattatgaaa gagagcaaaa acaataacga ctacaaagaa atggatgctt tacgtcggtt
     6781 gttggaaagt acagcacgaa tcaaaaaata ttctaacggc ggaggtaatg aagccgacct
     6841 caacccaaat attaaaaacc gtaataaagg cgaccgcaaa aagcccgagc aaaatgccat
     6901 ttccgaagag caagccgaac tgttgataaa cggcttttta gacggaatgt tccattatca
     6961 gaaaaaatgg cacgaagctg ggctgactca tcgaatccgc aatattctta aaagtcgtca
     7021 aattggagcg acttattatt ttgctcacga ggcgttagtt gatgcgttag taaccggtag
     7081 aaatcagatt tttatttccg cctcgaaaaa acaggcattg caatttagag cctatattgt
     7141 ggcatacgcc aaacgggttg ccgatgtgga gctaaaaggc gaaaccatta ccttgccgaa
     7201 cgagtctcaa ctaattttct tgggtacaaa ctcgaaaacg gcacagtctt accacggcaa
     7261 tctctatttt gatgaaatct tttgggtaaa ccgctttgag gaaatccgca aagtggcagc
     7321 gggtatggcg agccaaaaac aatatcggat tacttatttt tctacccctt cgagcattac
     7381 ccattccgcc tatctgcttt ggtcgggcaa gctgtttaac cgcaaacgtc cgaaagcgga
     7441 acaggtggaa attgatattt ctcacgccaa cttgaaaaac ggcaaaaaat gcggagacgg
     7501 ccaatggcga caaatcgtga atatctacga tgccgaggca ggtggctgta acctgtttga
     7561 tattgagcaa ctcaaactgg aaaactcgcc cgatgagttc gagcagctct ttatgtgtga
     7621 gtttattgat gataaccagt ctgtgttcaa gttcacgatg atgcaacgtt gccttgtgga
     7681 ctcgatggag gtgtggcgag attatgtatt cacggacggc taccaacgcc cattcggcaa
     7741 taaagaggta tgggttgggt atgacccgtc ttacaccggc gaccgctcgg cgttggtggt
     7801 aatcgctccg ccgaaagtgg acggcgggaa attccgacta ttagagtatc gcacttttaa
     7861 aggggctgat tttgccggac aagcggcaga aattgtcgct atttgtgcaa aatataacgt
     7921 gaccagactg gcgattgata ccacagggct tggtgtcggt gtttatgaaa tcgtcaaaaa
     7981 agaacgacca gatgcggtgg ctcttactta caacgtagag ctgaaatcca agatggtact
     8041 aaaaggcttg gatattatca gcaaaggacg atttgaattt gactcaatgc acgctgttga
     8101 ggttggtgcg agttttatgg caattaaaaa acagatcacc aacagcggac ggcaagtgac
     8161 ttatgtggca gaccgttcgg aagaggcaag ccacgccgac cttgcgtggg cttgcttgca
     8221 ggtatttatt aatgagccgt ttgatgggaa actggaagaa acgaccggca cagtagattt
     8281 tttagatgat taggacaaaa aatgaaaaaa caattgcgca aaaatttaac ccaaaatgac
     8341 cgcttacaac cgcaagcaca aaccgaaatt ttcagttttg gtgacccgat tccggtgtta
     8401 gaccgtgccg atattctcaa ttatttggag tgttcggcga tgtatgagaa atggtataac
     8461 ccaccgatga gctttgatgg cttggcgaaa tcgttaaggt catcaacaca ccacgaaagt
     8521 gcgatcatca ccaaagcaaa tattttgctt tccacttgcg aggttgatag ccgttattta
     8581 tcacgccgtg atttgtcatc gtttgttaaa gattatttag tatttggcaa cgcctatttt
     8641 gaggtggtgc gaaatcgcct tgggcaggta cagcgaatcg aatcaccttt ggcaaaatat
     8701 gtgcgaaagg gtttagaggc tggtcaattt tactatgtgc cacaacgatt cgatcaccaa
     8761 gaacacgaat ttgccaaagg ctcaatctat cacttgcttg agcctgatat taatcaagat
     8821 atttacggct tgccacaata tctttcggcc ctgcaatctg cgtggttaaa tgagagtgct
     8881 actctgtttc gccgtaagta ttttttaaat ggagctcacg ccggctttgt gttttatatg
     8941 agcgatgcgt cacaaaaaca agaagatgtt gaaaatattc gccagcagct caagcagtca
     9001 aaaggggtgg ggaattttaa aaacttgttc gtccacgcac caaacggcaa gaaagatgga
     9061 atacagatta ttccgattgc tgatgtgtcg gcaaaagatg agttttttaa tatcaagaac
     9121 gtgagccgtg atgatgtgtt agctgctcac cgtgtgccac cacaactgat ggggattatc
     9181 ccaaataaca ccggcggttt tggcaacgtg gctgatgctg ccgaggtgtt ttttatcacc
     9241 gagattgagc cattgcaaga gcgattgaaa gagtttaatc agtggttagg tcaagaggtt
     9301 atcaaattta aaccgtctaa attgttacag cggacacaat aaaacagatc tttacaaact
     9361 gacaatacag ctcctagatt ggggcttttt taatatataa agcaaaagtt ttgcct
//
LOCUS       DANLVT010000094         9397 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.094, whole genome shotgun sequence.
ACCESSION   DANLVT010000094 DANLVT010000000
VERSION     DANLVT010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9397)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9397)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9397
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.094"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..1285)
                     /locus_tag="PXC99_001905"
     CDS             complement(<1..1285)
                     /locus_tag="PXC99_001905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HDL5418337.1"
                     /translation="MDSIPLSSLFITLAILLVLSAFFSGSETGLMSLNRYKMRHLAEQ
                     GHKGAKLAEKLLARTDVLLSLILICNNLVNIAASAIATMIGMQLSGEAGVAIATGLLT
                     FVMLVFSEILPKTVAAIYPEKVGFFASFVLTPLKKLLSPIVFLMNLIIAGLMKLLRIQ
                     QKDKQGLSSEELRSVVLDAGKFIPAEHREMLVSILDMEKVTVDDIMVPRNDISGIDID
                     DDWKAIMRQLNHAPHARVIIYKGDMDNNIVGILRVREAFRLMLEKNEFTKEMLLRATD
                     EVYFIPEGTPLTTQLMNFKANKERIGLVVDEYGDIKGLVTLEDILEEIVGEFTTSSAP
                     TLEQEVQQQSDGTVIIEGSANLRDLNKLFDWDLPLEEARTFNGLILEHLEKIPDEGME
                     FELYNLKVMILEVSENMVKQAKVEHLSPKIEKEQDS"
     gene            complement(1409..2206)
                     /gene="ccsA"
                     /locus_tag="PXC99_001906"
     CDS             complement(1409..2206)
                     /gene="ccsA"
                     /locus_tag="PXC99_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HDL5418338.1"
                     /translation="MLLPLLSIVAYALALLWVAPTLVNLENAATVNKKPNMMLVFGFG
                     LLATILHFSVLYNELFLIEGQNFTVTNVISLMSFIMAACVTLALLKWKTVWFPLIIVY
                     SFAICSVGVAGFVKGSFIRNVQENAGLLFHLGIALFSYALFFLALIYAFQLKWLDRKL
                     KSKTMFFCQILPPLMTVERHFFTLTLAAQAMLTLTLFSGVVYLHNFFEPEHIHKAIFS
                     FLAWLVYSIQLLGQWKLHWRGKRVLIYSISGMMLLTIGYFGSRLIVN"
     gene            2422..2946
                     /gene="yceD"
                     /locus_tag="PXC99_001907"
     CDS             2422..2946
                     /gene="yceD"
                     /locus_tag="PXC99_001907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA accumulation protein YceD"
                     /protein_id="HDL5418339.1"
                     /translation="MQKVKLPLTIDPYKDAQRRVDYEGYISGKLLTRLGESVCNVQSD
                     AQVTLSLYVDPQRLTVIKGTAKVDVEFDCQRCGDPFTQTLDCSFVFSPVSNMDQADIL
                     PEIYEPIEVNEFGEVNLLDMIEDEFILELPLVPMHSEEHCEVSVSEQVFGELPEELVQ
                     KPNPFAVLANLKKN"
     gene            2963..3133
                     /gene="rpmF"
                     /locus_tag="PXC99_001908"
     CDS             2963..3133
                     /gene="rpmF"
                     /locus_tag="PXC99_001908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006231206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HDL5418340.1"
                     /translation="MAVQQNKKSRSRRDMRRSHDALTTAAVSVDKTSGETHFRHHVTA
                     DGYYRGRKVINK"
     gene            3152..4174
                     /gene="plsX"
                     /locus_tag="PXC99_001909"
     CDS             3152..4174
                     /gene="plsX"
                     /locus_tag="PXC99_001909"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HDL5418341.1"
                     /translation="MVDITLAVDVMGGDFGPRVTIPALEKALKQNPSLSFLLFGDEHQ
                     IAPLLQKHTLLNHPKIQIHHTEQVIEADVPFTTAIRQSKNSSMRLAIEAVKEGKAQGC
                     VSGGNTGALMGLAKLLIEPLPNIERPALTSLIPTLNGKSSVMLDLGANIEVSNHQLQQ
                     FAEMGNLFAQVMLDLVYPRLSLLNIGTEENKGTAQLQAVHQLLKNRQDLNYTGFIESD
                     KLTSYLTDVIICDGYTGNIALKALEGAAKNIISLFKKEKADSNICRNTKRYLLKAMFY
                     RYYRKLQQINPDRHNGATLLGLSKVVVKSHGGANINAFYYAIDYAVQQIQGDIPNKIL
                     EGLTQK"
     gene            complement(4271..5554)
                     /gene="hisD"
                     /locus_tag="PXC99_001910"
     CDS             complement(4271..5554)
                     /gene="hisD"
                     /locus_tag="PXC99_001910"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HDL5418342.1"
                     /translation="MQTLIWNNLTETEQQQYLARPAQVVGESIKAAVNEIKANVIANG
                     DKALFELAEKFDKVKLESLVVSEQQIQQAQSRISPELKQAIQNAKANIEAFHKAQQNQ
                     EVDIETQPGVCCQVITRPINAVGLYIPGGSAPLFSTVLMLAVPAKIAGCNKIVLCSPP
                     PIADEILYTAHLCGVETIYAVGGAQAIIAMANGTQTVAKVDKIFGPGNAFVTEAKRQV
                     VQEGTAIDMPAGPSEVLVIADEFADPAFVASDLLSQAEHGADSQVILVTPSESLARAV
                     DEELEKQVAVLPRAETARKALAHSRTFIAENLQQAVEISNKYAPEHLIVQTENARSLL
                     ADLDNAGSIFLGAYSPESMGDYASGTNHVLPTYGYTKTYSSLGLADFSKRMTVQELTP
                     QGFLALAETVERMASAELLDAHRNAVSLRVAKLKG"
     gene            complement(5566..6465)
                     /gene="hisG"
                     /locus_tag="PXC99_001911"
     CDS             complement(5566..6465)
                     /gene="hisG"
                     /locus_tag="PXC99_001911"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HDL5418343.1"
                     /translation="MTTQNRLRIAMQKKGRLSQECSELLKQCGVKIIWNDQRLIAYSE
                     NMPIEILRVRDDDIPGLVFDGVVDLGIIGENVLEEVELGRLSAGENVAYKKLRQLDFG
                     GCRLSLAIDRDKNYNNIKDLEDAVIATSYPNLLKRYMKEQNVPFKSILLTGSVEVAPS
                     AGIANAICDLVSSGATLEANGLKEVEVIYRSTACLIQRQEPLSAEKQALVDKLLTRIQ
                     GVQQANESKYIMLHAPKDKLAEITALLPGVENPTILPLANDQTRVAMHVVSQENLFWE
                     TMEQLKEMGASSVLVLPIEKMLA"
     misc_feature    complement(6498..6625)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            6824..7681
                     /locus_tag="PXC99_001912"
     CDS             6824..7681
                     /locus_tag="PXC99_001912"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HDL5418344.1"
                     /translation="MQISLKKIYSGKVRDLYEIDEKRMLMVATDRLSAFDVILDDPIP
                     RKGEILTQISNFWFNKLAHIMPNHFTGDSVFDVLPQEEAEAIQHRAVVCKRLIPVKIE
                     SIVRGYLTGSGLKDYQQTGTICGLTLPEGLVEASKLPQPIFTPSSKAEVGDHDINISY
                     EECERQIGQELAAKVRDAALKLYTEAANYALTKGIIICDTKFEFGLDENGELTLMDEV
                     LTPDSSRFWSVETYREGTNPPSFDKQFVRDWLENSGWNKQPPAPKIPAEVIEKTVAKY
                     QEALDLLTK"
     gene            complement(7822..9303)
                     /gene="ilvC"
                     /locus_tag="PXC99_001913"
     CDS             complement(7822..9303)
                     /gene="ilvC"
                     /locus_tag="PXC99_001913"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HDL5418345.1"
                     /translation="MANYFNTLNLRQKLDQLGRCRFMDRDEFADGCNFLKGKKIVIVG
                     CGAQGLNQGLNMRDSGLDIAYALRAEAIAEKRASFKRASENGFVVGTYEQLIPEADLV
                     INLTPDKQHSKVVADVMPLMKQGAAFGYSHGFNIVEEGEQIRPDLTVVMTAPKCPGTE
                     VREEYKRGFGVPTLIAVHPENDPKGEGLAIAKAWASATGGDRAGVLESSFVAEVKSDL
                     MGEQTILCGMLQAGSIVCYDKLVSEGKDPAYAGKLIQYGWETITEALKQGGITLMMDR
                     LSNSAKLRAFELSEQIKEELAFLFEKHMDDIISGEFSSTMMADWANGDANLLKWREET
                     GKTAFENAPQADGIKISEQEYFDNGVLMVAMVKAGVELAFDTMVSAGIYEESAYYESL
                     HELPLIANTIARKRLYEMNVVISDTAEYGNYLFSHVATPILAEKIIPTLEKGDLGEPT
                     PAVEIDNVTLRDVNDAIRNHPIELIGQELRGYMTDMKRISSQG"
BASE COUNT         2788 a         2136 c         1776 g         2697 t
ORIGIN      
        1 ctgaatcttg ctctttttca attttcggtg aaagatgttc aactttcgct tgtttaacca
       61 tattttcact cacttcaaga atcatcactt tcaagttgta gagttcaaat tccattcctt
      121 catcaggaat tttttctaaa tgctctaaaa tcaagccgtt aaaggttctg gcttcctcaa
      181 gcggtaaatc ccaatcaaat agtttgttca gatcacgcag gttggctgag ccttcaataa
      241 tcaccgtacc atctgattgt tgctgaactt cttgctcaag ggtcggtgct gatgaagtcg
      301 taaattcacc cacaatttct tctaaaatat cttcaagagt gactagccct ttaatatcac
      361 catactcatc aaccactaaa ccaatacgct ctttattcgc tttaaagttc attaattgtg
      421 tagtgagtgg tgtgccttca ggaataaaat agacttcatc tgttgcacgc agtagcattt
      481 ctttggtaaa ttcgtttttc tccaacatta aacgaaaggc ttcacgcacc cgcaaaatcc
      541 caacaatatt gttgtccata tcccctttgt agataatcac ccgagcgtga ggggcgtgat
      601 taagctgacg cataatcgct ttccagtcat catcaatatc aatgccgctg atgtcgttgc
      661 gaggcaccat aatgtcatca accgtcactt tttccatatc taaaatagag accaacattt
      721 cacggtgttc ggcaggaata aatttaccgg catcaagcac tacactacgc agctcttcgg
      781 agcttaagcc ttgtttatct ttttgttgaa tccgcaataa tttcatcagc ccggcaataa
      841 tcaaattcat taaaaataca atcgggctga gtaatttttt aagcggtgtt agcacaaagc
      901 tggcgaaaaa accgactttt tcagggtaaa ttgccgctac tgttttaggt aggatttccg
      961 aaaaaaccaa cattacaaaa gttagcaaac cggttgcaat tgccacaccg gcttcaccgg
     1021 ataactgcat accgatcatc gttgcaatcg cagaggcggc aatgttgact aagttattac
     1081 aaattaagat aaggctaagt agcacatcgg tgcgtgccaa gagtttttcc gccagtttcg
     1141 cccctttatg cccttgctcg gcaaggtgac gcattttgta gcggtttaaa gacatcaagc
     1201 cggtttccga gcctgaaaaa aatgcagaga gtactaaaag aatagctaag gtaataaata
     1261 aactactcag gggaatactg tccaaaattc aattcctatg taaattaatc ataaaaggta
     1321 gcgtaacact aaaagcgttg tcactacctc actttgtcgg ttcagccgac ttgcaaaaaa
     1381 ttttgctttt ttgaccgctt gtagatcatt aattgacgat caaacgacta ccgaaatagc
     1441 cgatggtgag caacatcata cccgaaatcg aataaataag cacccgtttt ccacgccaat
     1501 gtaatttcca ctgtccaagt aactgaatgc tataaacaag ccaagctaaa aaggagaaaa
     1561 ttgctttatg aatatgctcc ggctcgaaaa agttatgcaa ataaaccaca ccggaaaata
     1621 aagtgagcgt cagcatagct tgtgcagcta aggttaaagt aaagaaatgg cgttcaaccg
     1681 tcattagcgg tggtagaatc tggcaaaaga acattgtttt gctctttagt tttctatcca
     1741 gccatttgag ttgaaaagca taaattaatg ctaaaaagaa gagagcataa gaaaataatg
     1801 caatccctaa atggaaaagc agtcccgcat tttcttgcac attacggata aaactacctt
     1861 ttacaaatcc agccaccccc acactacaaa tggcgaaaga gtacacaata attaaaggaa
     1921 accaaaccgt tttccatttt aacaacgcaa gtgtgacaca agccgccata atgaaactca
     1981 tcaaagagat tacatttgtt accgtaaaat tctgcccttc gattaaaaat aattcattat
     2041 ataacacaga aaaatgcaaa atcgtggcaa gtaacccaaa cccaaagact aacatcatat
     2101 taggcttttt attaactgtt gcggcatttt ctaaattcac tagagtaggg gcaacccaaa
     2161 gtagcgctag agcgtaagca acaatggata aaagaggaag taacatattg tctcgaatct
     2221 cgtcaaataa gaataactat cagaatttta atcaaaagta accgttttag ctagtttttg
     2281 ctgttgctag atcaaaaatt atcctaaaaa atgtgctttt cgccttaaat tgaaccctac
     2341 cttttctcgg taagattatc tcactgaaaa caataatttt cctttgacta atttgctttc
     2401 tatctgtaat atgcacaccc tatgcaaaag gtaaaactac cccttacgat tgacccttac
     2461 aaagatgctc agcgtcgcgt tgattatgaa ggctacattt caggtaaact tctaacacgc
     2521 ttgggtgaat cagtatgtaa tgtgcaaagt gatgcacaag tcactctctc gttatatgtc
     2581 gatccacaac gcctaactgt gattaaaggc acagcaaaag tagatgtgga atttgattgc
     2641 caacgatgtg gtgacccgtt tacacaaacg ctcgactgtt catttgtttt cagtccggtg
     2701 tctaacatgg atcaggcgga catcttgccc gaaatttatg aacctatcga agtaaacgag
     2761 ttcggtgaag taaatttact agatatgatt gaagatgaat ttattcttga attacctcta
     2821 gtcccgatgc atagtgaaga acactgtgaa gtgtccgtaa gtgaacaggt atttggcgag
     2881 ttgccggaag aactggtaca aaaaccaaac ccgttcgcag tattagctaa tttaaagaaa
     2941 aactagatct aggagaaagc ccgtggctgt tcaacaaaat aagaaatctc gttcacgtcg
     3001 tgatatgcgt cgttcacacg atgcattaac aactgcagca gtttcagtag ataaaaccag
     3061 tggtgaaact cactttcgcc accacgtaac tgcagacggt tactaccgtg gtcgtaaagt
     3121 aatcaacaag taattccttt cgaggtttat cttggttgat atcactcttg cagtagatgt
     3181 gatgggcggg gactttggtc cccgcgttac tattcctgca ctggaaaaag ccttaaaaca
     3241 aaatccaagc ctttcttttt tattatttgg tgatgaacac caaatagccc ctttattaca
     3301 aaaacacaca ctactcaacc accccaaaat ccaaattcat cataccgaac aagtgattga
     3361 agctgatgtt ccgttcacta ctgcaatccg ccaaagcaaa aacagctcta tgcggttagc
     3421 gattgaggca gtaaaagagg gcaaagcaca aggttgtgtt agtggcggta acactggtgc
     3481 gttaatggga ttggcaaaat tattgattga accattacca aatattgaac gccctgcact
     3541 cacttcgcta attcctaccc tcaacggcaa atccagcgta atgttagatt taggggcaaa
     3601 tattgaagta agcaatcacc agctacaaca atttgcagaa atgggaaacc tgtttgctca
     3661 agtaatgctt gatttagttt accctcgcct gtctttattg aatattggta cagaagaaaa
     3721 taaaggcacg gcacaacttc aggcagtgca tcaactgctg aaaaacagac aagacttaaa
     3781 ttacaccggc tttattgaaa gcgataaatt aaccagctat ctcactgatg tgattatttg
     3841 tgacggctac accggcaata tcgcgttaaa agcgttggaa ggggcagcta aaaatattat
     3901 ttctctcttt aaaaaagaga aagccgattc caatatttgc cgtaacacca aacgatattt
     3961 actgaaagcg atgttctacc gttactaccg caaattgcaa caaattaacc ctgaccgcca
     4021 taacggtgcg accttgctcg gcttatctaa agtagtcgtg aaaagccacg gcggggcaaa
     4081 tatcaatgcc ttttattacg ctattgatta tgcggtgcaa caaattcaag gcgacattcc
     4141 aaataaaatc ctagagggtt taacccaaaa ataagcgaac tcaactgttc gcttattttc
     4201 atttcttgtt tcacttaaag atacaagcgg tcaaatttgc aaaaaaattt acccattcaa
     4261 ccgcttgtgt ttagcctttt aattttgcca ctcgtaaact aaccgcattg cggtgtgcat
     4321 ctagcaattc tgcacttgcc attcgttcca ccgtttcggc caaggctaga aagccttgtg
     4381 gtgtcagctc ctgcaccgtc attcgcttgc taaaatcagc taaacctaag ctcgaatagg
     4441 ttttagtgta gccgtaagtc ggtaaaacgt ggttagtgcc gctagcataa tcccccatac
     4501 tttccggcga atacgcccct aagaaaatcg agccggcatt atctaaatcc gccaacaacg
     4561 agcgagcatt ttcagtttgc acaattaaat gctcgggtgc atatttatta ctaatttcga
     4621 ccgcttgttg caggttttcc gcaataaaag tgcgactgtg agccaatgct ttacgggcag
     4681 tttcggcacg aggtaaaacc gccacctgct tttctaattc ttcatcgact gcccttgcca
     4741 agctctcact tggtgtgact aaaatcactt gggaatcggc tccatgttct gcttgagaga
     4801 gtaaatcgct cgccacaaat gcagggtcag caaactcatc ggcaatcacc aacacttccg
     4861 acgggcctgc cggcatatca atcgccgtgc cttcttgcac aacttggcgt ttcgcctccg
     4921 tcacaaacgc attgcccggg ccgaaaattt tatccacttt cgctaccgtt tgtgtgccat
     4981 ttgccatcgc aataatcgct tgagcccccc caactgcgta aatcgtttcc accccacaca
     5041 aatgggcggt gtagagaatt tcatcggcaa tcggcggtgg tgagcaaagc acaatcttgt
     5101 tacaaccggc aatttttgcc ggcactgcaa gcattaacac ggtagagaaa agcggggctg
     5161 aaccgcccgg aatataaagc cccaccgcat taatcgggcg agtgatgact tggcaacaca
     5221 cccccggctg ggtttcaata tccacctctt gattttgctg tgccttgtgg aaagcctcga
     5281 tattcgcttt cgcattttga atcgcttgct taagctctgg tgaaatacgg ctctgtgctt
     5341 gctgaatctg ctgttctgat acaactaagc tctctaattt tactttatcg aacttttcag
     5401 ctaattcaaa taatgcctta tcgccgttgg caattacatt cgctttaatt tcattaactg
     5461 ccgctttaat actctcgcca accacctgtg ccggacgggc aagatattgc tgctgctcag
     5521 tttctgttaa attgttccaa attagggttt gcatatttat tccttttacg ccaacatttt
     5581 ctcaatcggt aaaaccaata cggaacttgc gcccatttct tttagctgct ccattgtttc
     5641 ccagaacagg ttttcttggc tgacaacgtg cattgccaca cgggtttggt cgttagctaa
     5701 cggtaaaata gtcgggtttt ccacaccggg taataaagcg gtaatttccg ccagtttgtc
     5761 tttgggggcg tgcagcataa tatacttaga ttcgttcgcc tgttgcacac cttgaatgcg
     5821 ggttaataat ttatccacta acgcttgttt ttccgctgaa agtggttctt ggcgttgaat
     5881 taggcaagca gttgaacggt aaatcacttc aacctctttt aatccgttcg cctctaatgt
     5941 tgcacctgaa gaaaccaagt cacaaatcgc attcgcaatt ccggcacttg gagcaacttc
     6001 aaccgaaccg gtgagtaaaa tacttttaaa cggcacattt tgctctttca tataccgctt
     6061 taataaattg gggtaagaag tggcaatcac agcatcttct aaatctttga tattgttata
     6121 atttttatca cgatcaatag ctaacgataa acggcagcca ccaaaatcta actgacgaag
     6181 ttttttatag gcaacattct caccagcact taatcgccct aattccactt cctctaatac
     6241 attttcaccg ataatcccaa gatcaactac gccgtcaaaa actaagcctg gaatgtcgtc
     6301 atcacgcacc cgtaaaattt caatcggcat attttctgaa taggcaatca ggcgttgatc
     6361 gttccaaatg attttcacgc cacattgttt aagcaactca ctacattctt ggcttaagcg
     6421 accttttttc tgcatcgcaa ttcttaatcg attttgtgtt gtcattgttg tttccttctt
     6481 atgttttaaa ttgtaaaaat aaaaaaacct ctcgaaatca cttccgagag ggttaaattt
     6541 atgctgcgtt taggcgtact cggaagtctt atcttccgca cataccaaat gcccgaaaga
     6601 ttattcaggt aaatgatggt ggtgatgagt acgaataaaa gccattttgt tgttctccaa
     6661 actaaattgc tttaaaagat acgcttaaat tttggcaatg acaagtgttt tttgcgaaaa
     6721 aattgctatt tttcatctct ctaaaacaac tatcgcaaac gtttgcgtaa agcggtataa
     6781 tttgcctgat tttttgcaaa ttcaacaaag taggaataac actatgcaaa tcagcctcaa
     6841 aaagatctac tccggcaaag tccgtgatct ctacgaaatc gatgaaaaac gtatgcttat
     6901 ggttgccacc gaccgattat ctgcctttga tgttatttta gacgatccta ttcctcgtaa
     6961 aggcgaaatc ctcacccaaa tctccaactt ctggttcaac aaattagccc acattatgcc
     7021 aaaccacttc accggcgaca gtgtgtttga cgtgttaccg caagaagagg cagaagctat
     7081 tcaacatcgt gcggtggttt gcaaacgctt aataccggtg aaaattgaat cgattgtgcg
     7141 gggttattta accggctccg ggctgaaaga ttaccaacaa accggcacga tctgcggctt
     7201 aacattgccg gaaggcttgg ttgaggccag caaattaccg caaccgatct tcacaccgtc
     7261 cagcaaagcc gaggtgggcg atcacgatat taatatcagc tacgaagagt gtgaacgcca
     7321 gatcggtcaa gaacttgccg ccaaagtgcg tgatgccgct ctaaaactct acactgaagc
     7381 ggcaaactat gccctgacca aaggaattat tatttgcgac accaaattcg aattcggctt
     7441 agacgaaaac ggtgaactaa cgctaatgga cgaagtccta accccggatt ccagccgttt
     7501 ttggtcagtt gaaacctacc gagaaggcac aaatccacct tcatttgata aacaattcgt
     7561 gcgtgactgg ctggaaaata gcggttggaa caaacaaccc ccagccccga aaataccggc
     7621 agaggtaatt gaaaaaaccg tagcgaaata tcaagaagca ttggatttat taaccaaata
     7681 acaccacaag cggtcaaatt tacgctattt tttgcaaaac aaaaacctgt aagccaacac
     7741 ttacaggttt tttagttagt ggtaaaaagt gcggttattc taccgcactt ttgcaaaatt
     7801 ttgtgtaaat ctgaccgctt gttagccttg cgaagaaata cgtttcatat ctgtcatata
     7861 accacgtaat tcttgaccga ttaactcgat tgggtggtta cggattgcgt cattcacatc
     7921 acgtaaggta acgttgtcga tttccactgc cggagttggt tcacctaaat cgcctttctc
     7981 taacgttggg ataattttct ccgctaaaat cggggttgca acgtgagaga ataagtagtt
     8041 accgtattct gcggtatctg aaattaccac gttcatttca tataaacgct tacgagcgat
     8101 tgtatttgcg attaacggta actcgtgtag agactcgtag taagccgatt cttcataaat
     8161 accggctgaa accattgtat caaaggctaa ttcaacccct gctttcacca ttgcaaccat
     8221 taacacaccg ttatcaaagt attcttgctc agaaatttta ataccgtctg cttgtggtgc
     8281 gttttcaaag gctgttttac ctgtttcttc acgccatttt aataagttgg catcgccgtt
     8341 tgcccagtct gccatcatcg ttgatgagaa ctcaccactg atgatgtcgt ccatatgttt
     8401 ttcaaataag aacgctaatt cttctttgat ttgctcagaa agctcgaacg cacgcaattt
     8461 ggcactgttt gataagcgat ccatcattaa ggtgataccg ccttgtttta acgcttcggt
     8521 aatggtttcc caaccgtatt ggatcaattt acctgcgtaa gccggatctt taccttccga
     8581 cactaatttg tcgtagcaca cgattgaacc tgcttgtaac ataccgcaaa gaatggtttg
     8641 ttcacccatt aaatcagatt tcacttctgc tacgaatgaa gattctaata cgcccgcacg
     8701 gtcaccaccg gtagcacttg cccacgcttt cgcaatggct aaaccttcgc ctttagggtc
     8761 attttccggg tgaacggcaa ttaaggttgg cacaccgaaa ccacgtttgt actcttcacg
     8821 cacttccgtg cccgggcatt tcggagcggt catcacaacc gttaaatccg gacgaatttg
     8881 ctcaccttct tccacaatgt tgaaaccgtg tgaataacca aatgccgcac cttgtttcat
     8941 taacggcatt acatcggcaa ctactttaga gtgctgtttg tccggcgtta agttaatgac
     9001 taaatccgct tcaggaatta attgctcgta agtacccacc acaaagccgt tttcagaagc
     9061 acgtttaaat gaagcacgtt tttcagcaat cgcttcggca cgtaaagcgt aagcaatatc
     9121 taagcctgaa tcacgcatat ttaaaccttg gtttaaacct tgagcaccac aacccacaat
     9181 cacgattttt ttgcctttta agaaattgca gccatctgca aattcatcac gatccataaa
     9241 gcggcaacga cctaactggt ctaatttttg acgtaaattt aaagtgttga aatagttagc
     9301 cattttttaa tccttatttg aattaatgag attgatatga tgttttgttt gcacattgtt
     9361 atagtttgat ttgattatac cttaacctaa cattgcg
//
LOCUS       DANLVT010000095         9166 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.095, whole genome shotgun sequence.
ACCESSION   DANLVT010000095 DANLVT010000000
VERSION     DANLVT010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9166)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9166)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9166
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.095"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..354
                     /locus_tag="PXC99_001914"
     CDS             <1..354
                     /locus_tag="PXC99_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418346.1"
                     /translation="PFFGEKQETQASGNIAESNVEFAKNTENITACKVPDNLSAKNIV
                     TDFDKMTLIGLVKINEVMRALFIDEKQQLLALKENDLLNNEIEIKHINLKSITYINWK
                     LTKDCNIPYEINIKL"
     gene            363..1676
                     /gene="pilQ"
                     /locus_tag="PXC99_001915"
     CDS             363..1676
                     /gene="pilQ"
                     /locus_tag="PXC99_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus secretin PilQ"
                     /protein_id="HDL5418347.1"
                     /translation="MWRIFIYFLCGFSLAYANTISIVLKNAPTSLIFTYLAEETGKNM
                     VLDDNIETKSTLRLENKSVDEIFKTLGKVNKLSLTQEDDIVYIHKKEEKAADLTPLPI
                     MNLQNNGQNTPLVTAPKLITKTLKLHYAKASEVIESLTKGSGTFLSENGYIHFDERSN
                     SLIVKDSAKSLKNIENLVKQLDQPTEQIAIEARIVTISSEHLQELGVRWGIFSRGAGH
                     YKFGGRLEGNGLNNVTNNLNVNFPITGGASAVLQVSSINSRVLDLELSALEQENSVEI
                     IASPRLLTTNKKPASIKQGTEIPYVMYNTKSEATDVEFKEAVLGLEVVPHLSTQNQIL
                     LDLIVTQNSPNSQSGSSGLITIDKQELNTQVFAKHGETIVLGGIFQHLTQKGEDKVPI
                     LGSIPFIKRLFSQTRDKISKRELVIFVTPYILQSNEKSSNRKKSK"
     gene            1757..2170
                     /gene="nusB"
                     /locus_tag="PXC99_001916"
     CDS             1757..2170
                     /gene="nusB"
                     /locus_tag="PXC99_001916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HDL5418348.1"
                     /translation="MKISPRRRARECAVQAIYSWYISQNTVEEVELAFVTDQDMKGVD
                     MPYFRKLFRGVVDNVEAIDEALRPYLDRKESDVDPIERSILRLSTYELKFEHDVPFRV
                     VINEGIEVAKVFGSDDSHKYINGILDKLAPALGRK"
     gene            2233..3213
                     /gene="thiL"
                     /locus_tag="PXC99_001917"
     CDS             2233..3213
                     /gene="thiL"
                     /locus_tag="PXC99_001917"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HDL5418349.1"
                     /translation="MGEFDIIERYFNASQRPPRKDVLLSIGDDCALTSLKPNQQLAIT
                     TDTLVCGTHFLPTISPADLAYKSVASNLSDLAAMGAEPAWISLALTLPEINHDWLAEF
                     SEHFFEILDHYNVDLIGGDTTCGPLSLTITAQGIVPQDRGLFRHNAKVGDWIYVSGTL
                     GDSAGGLQLLLNQQSEQVNWNKEQSYLIQRHLRPTPRVLLGLTIASIANAAIDISDGL
                     LSDLSHILKRSDCGAVLNLENFPLSDVLLSCYSRTEAEYFALNGGEDYELCFTVPNDN
                     KAKLDKALANIGVTYTCIGQIRSAKEGLTLLRHNQPVTLPSQRGYDHFKK"
     gene            3218..3691
                     /locus_tag="PXC99_001918"
     CDS             3218..3691
                     /locus_tag="PXC99_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HDL5418350.1"
                     /translation="MKPINLKNPIHFFAFGFGSGLLKPAPGTWGSLAGLIVAIALWSI
                     TQSALFFGLLTLVSFIAGCVICTKASQDLEVHDDGRIVWDEIVAIFLMFTCLPEYNLL
                     GYLLAFISFRIFDILKPFPIRYFDEKLESGLGIMFDDILAAIFALISLHLLYYFI"
     gene            3698..4321
                     /locus_tag="PXC99_001919"
     CDS             3698..4321
                     /locus_tag="PXC99_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HDL5418351.1"
                     /translation="MLTILFIHFAGLISPGPDFFYVVRQSASHSVKSGVLAATGISIG
                     IIFWAAFAIFGLAWLSNSIGSLFQYAIMIIGGCYLVYIGSQMVRVTENIIFVENKAQL
                     TPLNPWQEIKKGLLINIFNAKAGVYFTSVISAYVDNLSNTLQMFELLLLFVVSTFIYF
                     CVVALLFSRRPVRLFYAKYSRYIDNISGVIFILFGSMLIYEGFSHFI"
     gene            4433..5038
                     /gene="ruvA"
                     /locus_tag="PXC99_001920"
     CDS             4433..5038
                     /gene="ruvA"
                     /locus_tag="PXC99_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005686751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HDL5418352.1"
                     /translation="MIGRLHGKIIEKQPPEILLDVQGVGYELLLPMTSFYSLPQIGEE
                     ATIFTHLVVREDAHLLFGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFATAI
                     ENEELAKLTKIPGIGRKTAERLLVELKGKFKGMAQSDFFVEVSHEQIVASNTPDPANE
                     ALDALIALGYKPADAEKMIKKVNKSGATSEQLIREALKNSL"
     gene            5175..6179
                     /gene="ruvB"
                     /locus_tag="PXC99_001921"
     CDS             5175..6179
                     /gene="ruvB"
                     /locus_tag="PXC99_001921"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HDL5418353.1"
                     /translation="MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVHDQMEIF
                     IKAAKLREEALDHLLIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLT
                     NLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
                     TTRAGSLTSPLRDRFGIVQRLEFYSVDDLTLIVKRSADCLNLNLSADGAYEVARRSRG
                     TPRIANRLLRRVRDYADVRNNGIITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERF
                     DGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIATSRTYAHLGITQID
                     "
     gene            complement(6278..6961)
                     /gene="artM"
                     /locus_tag="PXC99_001922"
     CDS             complement(6278..6961)
                     /gene="artM"
                     /locus_tag="PXC99_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtM"
                     /protein_id="HDL5418354.1"
                     /translation="MWWDYLVEISQGIGTSLQLTFVALIIAFILAIILTFILSLENRP
                     LKWLVNGFITLFTGTPLLIQFFLIYSGPGQFEWITESAAWVLLSDAWFCAMLALALNS
                     AAYSTLLFHGAVKAIPKGQWETCAALGLSRLDTLKILVPYALKRALPSYSNEIVLVFK
                     GTSLASTITIMDIMGYARQLYGTEYDALSIYGMAGVIYLVITGIMTIVLRKLESRVLA
                     FERFETEKA"
     gene            complement(6961..7632)
                     /gene="artQ"
                     /locus_tag="PXC99_001923"
     CDS             complement(6961..7632)
                     /gene="artQ"
                     /locus_tag="PXC99_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtQ"
                     /protein_id="HDL5418355.1"
                     /translation="MSSDILNLLVNATLMTLGIALASLLIGMLLSIFFVVLETSKIAC
                     IRKPTSIIITLLRGLPEILVVFLIYFGLIQVIFLITDEFAELNAFWCGAIALGIIFAA
                     YASQSLRGAIKAIPVGQWESGTALGLSRAQVFVRIILPQVWRHALPGLSNQWLVLLKD
                     TALVSLIGVDDLMRQSELINANTHQPFTWYGIAALIYLAITLISQRVIKVLEGRFTRF
                     ERGVA"
     gene            complement(7632..8357)
                     /locus_tag="PXC99_001924"
     CDS             complement(7632..8357)
                     /locus_tag="PXC99_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HDL5418356.1"
                     /translation="MKKLLLASAIAFATLSANAQETITFAMEPSYAPFETTNEKGEVI
                     GFDVDIAKALCEELKATCEFKTQSFDSLIAGLKFKNFDAIISGMDITEARQKQVAFTN
                     AYLENSVSYVAMKGKFTPETAKNVGVQNGTTFQQYLSKNAKQYNLKPYASLQSAVLDL
                     KNGRVDMVFGDTPVLAEWLKTEKELDFVGEKVVDKAFFGNGYGIAVNKSNTALLEKLN
                     SALATIKTNGKYEQIYNTWMAGK"
     gene            complement(8383..9117)
                     /gene="artP"
                     /locus_tag="PXC99_001925"
     CDS             complement(8383..9117)
                     /gene="artP"
                     /locus_tag="PXC99_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter ATP-binding protein
                     ArtP"
                     /protein_id="HDL5418357.1"
                     /translation="MAIRIQNVNFFYGSNQALFDINLEIEKGDTVVLLGPSGAGKSTL
                     IRTLNLMEVPQSGTLAIANHQFDLTAKTDSKAVSLLRREVGMVFQQYHLWPHLTVMQN
                     LIEAPMKVLGLSKEEAVARAKGHLARLRLSEFAERFPLHLSGGQQQRVAIARALMMQP
                     QVLLFDEPTAALDPEITAQVVDIIKELQSTGITQVIVTHEVGVARKVASKVVYMEKGT
                     IIEQGDASCFESPKTEQFAQYLSHSE"
BASE COUNT         2800 a         1929 c         1753 g         2684 t
ORIGIN      
        1 cctttctttg gagaaaaaca ggaaactcaa gcctcaggca acatcgctga aagcaatgtg
       61 gaatttgcaa aaaatactga aaacatcacc gcttgtaaag tacctgataa cctttctgca
      121 aaaaatatag taactgattt tgacaaaatg acactgatag gattagttaa aatcaatgaa
      181 gtaatgcgtg cattatttat tgatgaaaaa caacaattac ttgctctaaa agaaaatgac
      241 ttgcttaaca atgaaattga aataaaacat attaatctta aatccattac ttatattaac
      301 tggaaattaa ctaaagattg taatatccct tatgaaatta acatcaaatt atagaggttg
      361 atatgtggcg aatttttata tatttcttat gcggtttttc attagcctat gcgaatacca
      421 tttccatagt tttaaaaaat gctccaactt cgcttatttt tacttattta gcggaagaaa
      481 ccggtaaaaa tatggtgctt gatgataata ttgaaaccaa atcaacacta cgattagaaa
      541 ataaatcggt tgacgagatt tttaaaacgc ttggcaaagt caataaatta tccttaacgc
      601 aagaagatga tattgtttat attcacaaaa aagaggaaaa agcggctgac ttaacgcctc
      661 tgccaataat gaatttgcaa aataatgggc aaaatacacc gcttgtcacc gcccctaagt
      721 taatcacaaa aaccttgaaa ctacattatg caaaggcttc agaggtgatt gagtcgttaa
      781 ccaaaggcag cggaacgttt ttatcggaaa acggttatat tcactttgat gaaagaagca
      841 atagcctgat tgtgaaagac agtgcaaaat cgcttaaaaa tatcgagaat ttagtaaaac
      901 agctcgacca acccaccgag caaattgcga ttgaggctag aattgtcact atcagtagcg
      961 agcatttgca agagcttggc gttcgctggg gaattttttc tcgtggggct gggcactata
     1021 aatttggcgg acggctggaa ggcaatggac tcaacaatgt caccaataac ttaaatgtaa
     1081 attttccgat tactggtgga gcatctgccg tattacaggt ttcgtccatt aatagcagag
     1141 tgcttgattt agaattaagt gcattagaac aagaaaatag tgtggaaatt attgccagcc
     1201 cacgcctgtt aaccaccaat aaaaagccgg caagtatcaa gcaaggcacg gaaattcctt
     1261 atgtgatgta caacaccaaa tcggaagcca ccgatgtcga atttaaagaa gcggtattag
     1321 ggcttgaagt cgttccacac ctttcaaccc aaaatcaaat tctactcgat ctgatcgtta
     1381 cccaaaattc gccaaattcc caatccggca gtagtggctt aattacgatt gataaacaag
     1441 agctaaatac gcaagtattt gccaaacacg gcgaaaccat tgtacttggt ggtatttttc
     1501 aacatttaac ccaaaaaggc gaagataaag tgccgatttt aggctcaatt cccttcatca
     1561 agcggttatt tagtcaaact cgagataaaa tcagcaaaag agagctagtc atttttgtga
     1621 cgccttatat ccttcaatct aatgaaaaga gcagcaaccg caaaaaatca aaatagcaca
     1681 tcataaacgc aagcaaaaat aggggaagtg tgatagaatc agccgtcatt ttttgagtta
     1741 aagatttaga ggttttatga aaatttcccc acgtcgccgt gcaagagaat gtgcggtgca
     1801 agccatttat tcttggtata tttcccaaaa cacggttgaa gaagtggaat tggcgtttgt
     1861 gaccgatcaa gatatgaaag gcgttgatat gccttatttc cgtaaacttt tccgtggcgt
     1921 tgtggataat gtagaagcca ttgatgaagc attacgccct tatttagatc gtaaagagtc
     1981 agatgttgat cctattgaac gttctatttt gcgtttatca acttacgaat taaaatttga
     2041 acacgatgtg cctttccgtg tagtcatcaa tgaagggatt gaagtcgcta aagtgttcgg
     2101 ctctgatgac agccacaaat acattaacgg cattttagat aaattagccc cagcattagg
     2161 cagaaaataa taagattccc caatttatac ataaattggg gattttgatt ataacgctca
     2221 aggagatttt ttatgggtga atttgatatt atcgaacgct attttaatgc ttctcaacgc
     2281 ccacctcgca aagatgtttt actttctatc ggcgatgact gtgcgctcac atcactcaaa
     2341 ccaaatcagc aacttgcgat cacaaccgat acccttgttt gcggcactca ttttctaccg
     2401 actatttcac ctgccgatct cgcttataaa agtgtggcgt ccaatttaag cgatcttgcc
     2461 gcaatgggtg cagaacctgc atggatctct ttagccttaa ccttacctga aattaatcac
     2521 gattggctag ctgaatttag tgaacatttc tttgagattc ttgatcacta taatgttgat
     2581 ttgattggag gggatactac ttgtggacca ctatctttga caatcacagc tcaagggatt
     2641 gtgccacaag atagaggctt attccgccat aatgctaaag taggcgattg gatctatgtt
     2701 tccggcacac tcggtgacag tgcaggtggt ttgcaacttc tgctaaatca gcaaagcgag
     2761 caagtgaatt ggaataaaga gcaaagctac ctgattcaac gccatttacg cccaacacct
     2821 cgagttttac ttggcttgac tatcgcctct attgctaatg cagcgattga tatttcagat
     2881 ggtctattgt ctgatttaag ccatatttta aagcgcagtg actgtggtgc agtattaaac
     2941 cttgagaatt tccccttgtc tgacgtctta cttagttgtt attctcgaac agaggcagaa
     3001 tattttgcct taaacggtgg cgaagattac gaactctgct ttaccgtgcc aaatgacaac
     3061 aaagccaaat tagacaaagc attagccaat atcggagtaa cttatacatg tattgggcaa
     3121 attcgttcgg ctaaagaagg tttaacccta ttacgtcata atcagcctgt caccttgccc
     3181 tcacaacgag gctacgatca ttttaaaaaa taacgcaatg aaaccaatta atcttaaaaa
     3241 tccgattcat ttttttgcct ttggctttgg ttcaggctta ttaaagcctg ctcccggcac
     3301 ctggggtagc ctcgccgggc taattgtagc aatagccttg tggtctatca cacaatccgc
     3361 cctgtttttc ggcttactca ccctagtttc ttttattgcc ggttgtgtta tttgcaccaa
     3421 agccagccaa gatctagaag tacacgatga cgggcgaatt gtttgggacg aaatagttgc
     3481 catctttttg atgttcacct gtttgcctga atacaatctt cttggctacc tgctcgcctt
     3541 tatcagcttt cgcatttttg atattttgaa gccttttcca atccgctatt ttgatgaaaa
     3601 attagaaagc ggtttaggca ttatgtttga tgatattctc gcagccattt ttgccctgat
     3661 ttcacttcat cttttatatt atttcattta aaaatttatg ctcactattt tatttattca
     3721 ttttgccggg cttatcagcc ccggccccga tttcttctat gtcgtcagac aatccgccag
     3781 ccactcagtt aaaagtgggg tacttgccgc aaccggaatc tcaatcggca ttattttttg
     3841 ggcagccttt gcgatttttg gtttagcgtg gctcagtaat agtattggct cgctgtttca
     3901 atatgccatt atgattatcg gtggctgtta cctggtttat attggctctc aaatggtacg
     3961 ggtaaccgaa aatatcattt ttgttgaaaa taaagctcaa ctcacgccgc taaacccttg
     4021 gcaggaaatt aaaaaaggct tattaatcaa tatctttaat gccaaagctg gcgtttactt
     4081 taccagcgtc atttcagcct atgtagataa tttaagcaat accctacaaa tgttcgaact
     4141 acttctactc tttgtggtaa gtacctttat ttatttctgt gtggtggcac tactcttttc
     4201 tcgccgaccg gtcagactgt tctatgccaa atatagtcgc tatattgaca atatctcagg
     4261 cgtaattttc atcttattcg gctcgatgct gatttatgaa ggattcagcc actttatcta
     4321 atcacaagcg gtctgatttc actaaaaatt tgcaaattcc gctatcaata aatagtgtta
     4381 ttttatacag tttctgctat gctactgcca attttaactc tgagagaaca aaatgattgg
     4441 acgattacac ggcaaaatta ttgaaaagca accgcctgaa attttattag acgtgcaagg
     4501 ggtaggctat gaactactgc tcccgatgac cagtttctac agcctgccac aaattggcga
     4561 agaggcgact attttcaccc atttagtggt gcgagaagat gctcacttgc tattcggctt
     4621 tgcccaaaaa caagatagaa ctctattccg tgaattaatt aaaaccaacg gtgtcgggcc
     4681 gaagctcgcg ttggcaattc tatcagcaat gtcggtgtcg caatttgcca ccgcgattga
     4741 aaatgaagag ctggcaaaat taaccaaaat tccgggaatc ggtcggaaaa ccgcagaacg
     4801 cttattggtg gaactcaaag gcaaatttaa aggaatggca cagagtgatt tctttgtgga
     4861 agtatcgcac gagcaaattg tggcaagtaa tacgccagac ccggcaaatg aagcccttga
     4921 tgccttaata gccctaggct acaaacctgc cgatgcggaa aaaatgatta agaaagtgaa
     4981 taaatccggt gcaacgagcg aacagcttat tcgtgaggcg ttaaaaaatt cattatgata
     5041 ttgatagtat agggcgaaag atatttcgcc cctacaatct catttttaaa aatatatgtg
     5101 taggggcaaa tcaatatttg ccctcatgag taatataggg taataccatt ccactacaac
     5161 aataatctaa atgtatgatt gaagcagata gaatcatcag tgcctcgcct aagcgtgagg
     5221 aagaagttat agaccgagca atccgcccga aactgcttgc cgactatgtc gggcagcctt
     5281 ctgtgcatga tcaaatggag atcttcatca aagccgctaa attgcgggaa gaggcattag
     5341 atcacttgct cattttcggc ccgcccggtt tggggaaaac tacccttgcc aacattgtgg
     5401 caaacgaaat gggggtgaat attcgcacaa cttcagggcc ggtgctggaa aaagcaggcg
     5461 atttggcagc aatgctgacc aaccttgaac cttacgatgt gctgtttatt gatgagattc
     5521 accgcctttc tccagcgatt gaagaagtgc tttatcctgc aatggaagat taccagctcg
     5581 atattatgat tggggaagga cctgctgctc gttccatcaa gctcgatcta ccgcctttta
     5641 cccttgtagg ggcaaccacc cgtgccggct cactgacctc accgttacga gatcgttttg
     5701 ggattgtaca acgcttagaa ttttactcag tggacgatct tactctgatt gtcaaacgca
     5761 gcgccgattg cttaaatctc aatttgtcgg cagacggtgc ttatgaagtg gctcgccgct
     5821 cccgtggcac accccgtatt gccaaccgct tactccgccg agttcgggat tacgccgatg
     5881 tgcgtaataa tggcattatt acctcagaca ttgccaaaca agctctggca atgctcgatg
     5941 tggattcgga aggctttgat tttatggaca ttaaactgtt gcaagcgatt gtagaacgct
     6001 ttgatggcgg gccagttgga ttagacaatc ttgcggcagc tatcggcgaa gaacgagata
     6061 cgattgaaga tgtgctagag ccttatctga ttcagcaagg ctttctacaa cgcacaccaa
     6121 gaggcagaat tgctaccagc agaacctatg cccatttagg tataacccaa atagattagt
     6181 catatttcta aaggcattga tacataaata aaaagcggat agttagtact atccgctttc
     6241 atttgcaaaa aatcaataaa atttgaccgc ttatccgcta ggctttttca gtctcaaaac
     6301 gctcaaaagc taatactctg ctttctaatt ttctgagaac gattgtcata atgccggtaa
     6361 ttaccaagta aataacccct gccataccat aaattgataa tgcgtcatac tctgtaccat
     6421 aaagctggcg agcatagccc ataatatcca taatcgtaat ggttgaagca agcgatgtgc
     6481 ctttaaaaac tagcacaatc tcattactat aagaaggtaa agcacgtttt aatgcgtaag
     6541 gcactaaaat tttcagtgta tctaaacggc tcaaaccaag ggctgcgcaa gtttcccatt
     6601 gccccttcgg aatcgctttt accgcaccgt ggaacaacaa tgtcgaatag gcagcactgt
     6661 ttaacgctaa agccaacatt gcacagaacc aagcgtcgga taataatacc caagccgcac
     6721 tttctgtaat ccattcaaat tgccccgggc cactataaat caagaaaaat tgaattaata
     6781 aaggcgttcc ggtaaaaagc gtaataaatc cgtttaccaa ccactttaac ggacgatttt
     6841 ctaacgagag aataaacgta agaatgatcg ctaaaataaa ggcaatgatg agcgccacaa
     6901 aagtgagctg taggctggtg ccaataccct gtgaaatttc aactaaataa tcccaccaca
     6961 ttaagcaact cctcgctcaa aacgggtaaa tctaccttct aatactttaa tcactcgctg
     7021 gctaattaga gtaatcgcta aataaataag tgctgctatc ccataccaag taaaaggttg
     7081 atgagtatta gcattaatta actccgattg acgcattaaa tcatctaccc caattaacga
     7141 taccaatgcc gtatctttta acagcactaa ccactgattg cttaagcctg gtaaagcgtg
     7201 tcgccagact tgagggagaa taatgcgaac aaatacttgc gctcggctta accctaacgc
     7261 cgtaccagat tcccactgcc caactggaat agctttaatt gcaccacgta aagattggga
     7321 agcataagca gcaaaaataa tacccagcgc aatagcccca caccagaaag catttaactc
     7381 cgcaaactca tcggtgatca agaaaataac ttggataaga ccaaaataga tcaaaaatac
     7441 cactaaaatc tccggcaacc cacgcaataa tgtaattatt atactagttg gtttacggat
     7501 acatgcaatc ttactggttt caagtaccac aaaaaagatt gacaataaca ttccaatcaa
     7561 gaggcttgcc agcgcaatcc ctaaggtcat cagggttgcg ttgacaagta agtttaaaat
     7621 atcgctagac attatttccc agccatccaa gtattataaa tttgctcata tttaccattt
     7681 gttttgatgg tagctaaagc cgaatttaat ttttcaagca atgcagtgtt agatttattt
     7741 accgcaatac catatccatt accaaaaaag gctttatcga ctactttttc acccacgaaa
     7801 tctaactctt tttcggtttt tagccactct gccaatactg gtgtatcacc aaataccata
     7861 tcaacacgtc cattttttaa atctaacact gctgattgta ggctagcgta aggttttaaa
     7921 ttatattgtt tggcattttt gcttaagtat tgttgaaaag ttgtaccatt ttgcacgccg
     7981 acattcttag ctgtttccgg tgtaaatttc cccttcattg cgacataact tactgagttt
     8041 tctaaataag cattggtaaa ggcaacctgt ttttgacgcg cttcagtaat atccatgcct
     8101 gaaataattg catcaaaatt tttaaatttt aatcccgcaa ttaagctatc gaatgattgc
     8161 gttttaaatt cgcaagttgc ttttagttct tcacataatg cttttgcaat atctacatca
     8221 aagccaataa cttcaccttt ttcatttgtt gtttcaaaag gggcgtaaga aggctccatc
     8281 gcaaaagtga tagtttcttg tgcattggca gaaagcgttg caaatgcgat agcggaagct
     8341 aataataatt ttttcattgt tgtgtccttt tgttgttata gattactctg agtgagataa
     8401 atattgagca aattgctctg ttttcggtga ttcaaaacaa cttgcatcac cttgttcaat
     8461 aattgtacct ttttccatgt acaccacttt gcttgccacc ttacgagcaa cgcctacttc
     8521 gtgagtcaca atcacctgag taatgcctgt agattgcaat tctttaataa tatcaactac
     8581 ttgtgcagta atttccgggt caagtgctgc ggtaggttca tcaaataata agacctgtgg
     8641 ctgcatcatc agtgctctgg caatcgccac ccgttgttgc tgaccacctg aaagatgcag
     8701 tgggaaacgc tcggcaaact cgctcaaacg caaacgtgcc aaatgtcctt ttgctctggc
     8761 aaccgcttct tctttgctta acccaagcac tttcatcggg gcttcaatta agttttgcat
     8821 tacggttaaa tgcggccata aatgatactg ctggaacacc attcccacct cacggcgtaa
     8881 caaactcacc gctttgctgt cggttttagc agttaaatca aattgatgat ttgcaatcgc
     8941 caaagtgcct gattgcggta cttccattaa gtttaaggtt cgaattaggg tacttttacc
     9001 tgccccactc gggccaagca atacaacagt atcccctttt tcaatctcta agttaatgtc
     9061 aaataaggct tggtttgagc cataaaaaaa attgacattt tgaatacgaa ttgccattcg
     9121 ttaaaatcct actacattta aaataatgaa tgaatactaa ttattt
//
LOCUS       DANLVT010000096         9104 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.096, whole genome shotgun sequence.
ACCESSION   DANLVT010000096 DANLVT010000000
VERSION     DANLVT010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9104)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9104)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9104
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.096"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            181..927
                     /gene="znuC"
                     /locus_tag="PXC99_001926"
     CDS             181..927
                     /gene="znuC"
                     /locus_tag="PXC99_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter ATP-binding protein ZnuC"
                     /protein_id="HDL5418358.1"
                     /translation="MVSLENIEVSFNGQKALQNINLSIYPNSITTIVGPNGGGKSTLL
                     KILLKLLSPNKGKVIHQKGLKIGYVPQKLHLEPSMPITVYRFLALKPHTTKEMINQAL
                     DLFSITHLTENSMQKLSGGELQRVLLARAILDRPQLLVLDEPMQGVDIIGQTELYQLL
                     NKTRDLLNCAILMVSHDLNIVMANTDEVLCINKHICCAGSPEVITHDPSFIHFFGDQF
                     ARNVAFYSHKHNHHHNLHGDICLGECSCEH"
     gene            1092..3905
                     /gene="sucA"
                     /locus_tag="PXC99_001927"
     CDS             1092..3905
                     /gene="sucA"
                     /locus_tag="PXC99_001927"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HDL5418359.1"
                     /translation="MQYTHFDDWLASSALGGANQSYIEEIYEQYLENPANVDESWRNI
                     FDSFPKTPQVEQAHTPIRDYFRKLAREQQPQSVTIIDPEAGAKQVRLLQWINAHRFRG
                     YLEAKLDPINYYRWKTSSVPELDYKYHGFTDEDLNETFTVGRYVYDKDTMKLSELDKA
                     LKETYLGPIGLEFMHVQDIEQRNWLQAKMESVLNKPLFTKAEKLNLLSELTAADGLER
                     YLGAKFPGAKRFSLEGSDAFIPMMKEIIRHASRQGMTDVVLGMAHRGRLNMLVNVFGK
                     RPAELFDEFAGKHADESRTGDVKYHQGFSSNFAVDDKNVHLTLAFNPSHLEIVSPVVI
                     GSVRARQERMRDIEHEKVLAVTVHGDSAVAGQGVVQETLNMANVRGYKVGGTIRIVIN
                     NQIGFTTSNPNDTRSTEFCTDIAKMIQAPIIHVNGDDPEAVAFAARMAVEYRTKFKRD
                     IFIDLISYRRHGHNEADEPLATQPMMYSIIKKHPTPRKVYADRLITEGVLTNEQEIEM
                     LNLYRDALDNGECVVPEWREMDMAAVDWLQYLNYDWTALYESKFPEERFLTIAKRVCE
                     YPASLKAHSRVEKIYTDRKEMYEGKKLFDWGMAETMAYATLLDEGTHVRLSGEDAGRG
                     TFFHRHAVIHNQNDGTGYVPLTQLHANQGRFQVWDSVLSEEAVLAFEYGFATTDPKTL
                     TIWEAQFGDFANGAQIVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARVERY
                     LQLCAQQNIQVCVPSTPAQVYHMLRRQAIRKMRRPLVAITPKSLLRHPLAVSSLDELI
                     NGSFQNVIGELDNIDPKQVKRVVMCSGKVYYDLIEKRRENNQTDVAIIRIEQLYPFPL
                     EEMQQILEPYAHVKDFVWCQEEPLNQGAWYCSKHNFEASLPEDAKLTYAGRPASASPA
                     VGYPSLHAKQQKQLVEDALTIAE"
     gene            4008..5237
                     /gene="odhB"
                     /locus_tag="PXC99_001928"
     CDS             4008..5237
                     /gene="odhB"
                     /locus_tag="PXC99_001928"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HDL5418360.1"
                     /translation="MTIEILTPDLPESVADATVATWHKKVGDNVKRDEILVEIETDKV
                     VLEVPASSDGILAEITQEQGATVVSKQSLGKLVVAKAGDISSATIEQKTESTPSDRKH
                     AAIENSHANADDQGPAIRRLLAEHDLQAADIQGSGVGGRITREDIEKEIAKRVQINQV
                     KGSATSQNTVSTVAFNSRSEKRVPMTRLRKRIAERLLEAKNTTAMLTTFNELDMQPIM
                     NLRKTYGEKFEKQHGVRLGFMSFYIKAVVEALKRYPEINASIDGDDVVYHNYFDISIA
                     VSTPRGLVTPVLRDCDKMSMADIEKKIKELAEKGRDGKLTVEDLTGGNFTITNGGVFG
                     SLMSTPIINPPQSAILGMHAIKDRPVAIDGQVVIRPMMYLALSYDHRLIDGKESVGFL
                     VAVKELLEDPTRLLLEI"
     gene            5530..6690
                     /gene="sucC"
                     /locus_tag="PXC99_001929"
     CDS             5530..6690
                     /gene="sucC"
                     /locus_tag="PXC99_001929"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HDL5418361.1"
                     /translation="MNLHEYQAKQIFKQYGLPVSQGIACKTAEEAVEAIKQLQGEQWA
                     IKCQVHAGGRGKAGGVKLVRNEAEVREFADKWLGKRLVTFQTDANGQPVNTLYLEETC
                     NIDRELYLGAVVDRSAQKVIFMASSAGGMNIEEVAEKTPELIHKAVIDPLTGGQGYQG
                     RELAFKLGLKGDEVKQFADIFVKLANLFVEKDLALLEVNPLVITKEGQLLCLDAKMSI
                     DSNALYRHPELKELQDPSQDDEREAEAEKWNLNYVALDGNIGCMVNGAGLAMGTMDIV
                     KLYGGKPANFLDVGGGATKERVAAAFKLILSDPNVKAVLVNIFGGIVRCDLIADGVIA
                     AVNEVGVNVPVIVRLEGTNAAQGREILANSGLSILAASSLKQAAELAVKSAN"
     gene            6699..7568
                     /gene="sucD"
                     /locus_tag="PXC99_001930"
     CDS             6699..7568
                     /gene="sucD"
                     /locus_tag="PXC99_001930"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HDL5418362.1"
                     /translation="MSILIDKNTKVICQGFTGGQGTFHSEQALAYGTQLVGGVSPNKG
                     GTTHLGLPVFNTVREAVEATGATATVIYVPAPGCKDAILEAIDAGIQLIVCITEGIPT
                     LDMLQVKQRLNQTGVRMIGPNCPGVITPDECKIGIMPGNIHKKGNIGIVSRSGTLTYE
                     AVKQTTDEGFGQSTCVGIGGDPIPGSNFIDILKLFQDDPETEAIVMIGEIGGSAEEEA
                     AAFIKENVTKPVVSYIAGVTAPKGKRMGHAGAIISGGKGTADEKFKILEDAGVTTVRS
                     LAEIGSALRKILG"
     gene            complement(7639..9084)
                     /locus_tag="PXC99_001931"
     CDS             complement(7639..9084)
                     /locus_tag="PXC99_001931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine:cation symporter family protein"
                     /protein_id="HDL5418363.1"
                     /translation="MDSIILFFESVLTWIVNTIDGPLWDVTIILLLGAGLFFTLTTGF
                     VQLRLLPQSLREMWGGRSTEGKSLTPFQAFTTGLASRVGVGNIGGVATAIALGGPGAV
                     FWMWITALMGMSSAFAESSLAQLYKTKDPNGMFRGGPAYYITRGLKLPSLAIAFAVTL
                     IFTFGFAFNAVQSNSIVEATKNAWDWNPVYVGMTLVVITGLIISGGVKRIGKVSAQVV
                     PMMALFYLIIAVIILGMNIEKVPSIISLIIESAFDFSAAAGGTFGALVSKTMLMGIKR
                     GLFSNEAGMGSAPNSAATSDAKHPASQGLIQMLGVFVDTIVVCTCTAVIILMSNNYGG
                     ETLRGISLTQSALQFHLGEFGLHFLAFVILLFCFTSIIGNYAYAETNIRYIKNSPWFV
                     WGFRAIVLFFVYFGAVRDGGIVWAFADTVMASMAVINLVAILILAPIVWIILKDYLRQ
                     VKSGKEPVFRIEEHQDLIHKGVDPLIWKSKE"
BASE COUNT         2860 a         1965 c         1899 g         2380 t
ORIGIN      
        1 ttctgagtag actattttac caagaaaaaa ttcatttaat ctattgtcac aacacgaaaa
       61 atcagctaat tttaactcaa tacccctaat ttttttatat caatgaaaat ccatcatctt
      121 aaaccgaatc taaataccac tacatttgaa ctattcaaac agaatttatc cgcgacatca
      181 ctggtttctc ttgagaatat tgaagtgtct ttcaatggac aaaaagcatt acaaaatatt
      241 aatttatcta tttatcctaa ctctatcacg acgatagtcg ggccaaatgg tggaggaaaa
      301 tctaccctgc ttaaaatttt gctaaaatta cttagcccaa ataaaggaaa ggttattcat
      361 caaaaaggac tcaaaattgg ctatgtacca caaaaattgc atttagaacc ctcgatgccc
      421 attactgttt atcgatttct tgcgctaaaa ccacatacta ccaaagaaat gattaaccaa
      481 gcactagatc tgttttctat tacccatctc actgaaaata gtatgcaaaa attatcgggt
      541 ggtgaacttc aacgtgtatt gctggctcgg gcaattttag atcgtccgca actcttagtg
      601 ttagatgaac caatgcaagg cgttgatatt ataggccaaa ccgaactcta tcaattactt
      661 aataaaacaa gggatctcct taactgtgct attttaatgg tctcacacga cttaaatatt
      721 gtgatggcga atacagatga agtgctttgc atcaataaac atatttgttg tgccggaagc
      781 cccgaagtca ttacacacga tccgagcttt atccattttt ttggcgacca atttgcacgt
      841 aatgttgcat tttattcaca taaacataac catcaccata atttacatgg cgatatctgc
      901 cttggtgaat gtagttgtga gcactgatag gcgtcctttt taccaaatgt ttaaaatttg
      961 taaaaataat gctaaaaata accgcttgca gcacaagatt tatctaaaaa tcagacttac
     1021 ttcacatttt atttgcttaa attggagtat aataagggcg tgatttcata ccacaaacag
     1081 gtcaggtctt tatgcaatat acacattttg atgattggct tgcatcatct gcattaggcg
     1141 gtgcaaacca atcttatata gaagaaattt atgaacagta tctagaaaat ccagcaaatg
     1201 ttgatgaaag ctggagaaac atctttgatt catttcctaa aactccccaa gttgaacaag
     1261 ctcacacccc tattcgtgac tatttccgta aattagcccg tgaacagcaa cctcaatccg
     1321 tcactattat tgacccagaa gcaggggcga aacaagttcg cttactgcaa tggattaacg
     1381 ctcaccgttt ccgtggctat ttagaggcaa aactagaccc aattaactat taccgttgga
     1441 aaacctccag cgtgcctgaa ttggactaca aatatcacgg cttcaccgat gaagatctca
     1501 acgaaacttt tacggtcggt cgctatgtct atgataaaga cacaatgaag ctcagcgaac
     1561 tggataaagc cctaaaagaa acttatttag ggcctattgg tttagaattt atgcacgttc
     1621 aagatattga acaacgcaac tggcttcaag ccaaaatgga aagcgtgcta aacaaaccgc
     1681 tgttcaccaa agcagaaaaa ctgaatttat taagcgaatt gaccgctgcc gatggtttag
     1741 agcgttactt aggggcaaaa ttcccggggg caaaacggtt ctcattggaa ggtagtgatg
     1801 cctttattcc gatgatgaaa gaaattatcc gccacgcttc ccgtcaaggt atgaccgatg
     1861 tggttttagg tatggcacac cgtggtcgtt tgaatatgtt agtgaacgta tttggtaaac
     1921 gcccggcaga attgtttgat gaatttgccg gcaaacacgc tgatgaaagc cgcacgggcg
     1981 atgtgaaata ccaccaaggt ttctcctcaa actttgccgt agatgataaa aacgttcacc
     2041 ttacccttgc tttcaaccca tcgcatttag agattgttag cccggtggta atcggctcag
     2101 tgcgtgcaag acaagaacgt atgcgtgata tcgaacacga aaaggtgctt gcggtgaccg
     2161 ttcacggtga ctctgcagtg gcagggcaag gtgtagtgca agaaacctta aatatggcaa
     2221 atgttcgtgg ctataaagta ggaggcacta tccgtattgt gatcaacaac caaatcggat
     2281 ttaccacctc taacccaaat gacacccgct ccaccgaatt ttgtaccgac attgccaaaa
     2341 tgattcaggc accgattatt cacgttaatg gtgatgatcc ggaagctgtt gcctttgcag
     2401 cgagaatggc tgtggaatat cgtactaaat ttaaacgtga tatttttatt gatttaatct
     2461 cttaccgtcg tcacggtcat aatgaagccg atgagccttt agcaactcag ccaatgatgt
     2521 atagcatcat caaaaaacac ccgacacctc gcaaagtcta tgcggatcgt ttaattaccg
     2581 aaggtgtttt aaccaacgag caagaaatcg agatgttaaa cctgtatcgt gatgccttag
     2641 acaacggcga atgcgttgtg ccggaatggc gtgaaatgga tatggcagcg gtcgattggc
     2701 tacaatatct caattacgac tggactgccc tatacgaaag taaattccct gaagaacgat
     2761 tcttaaccat tgccaaacgg gtgtgcgaat atccggcttc gcttaaagct cattctcggg
     2821 ttgaaaagat ctacactgat cgcaaagaga tgtatgaagg caagaaatta ttcgactggg
     2881 gtatggctga aacaatggca tacgctactt tgttagacga aggcacacat gttcgccttt
     2941 caggagaaga tgccggacgt ggcactttct tccatcgcca tgcggtaatc cataaccaaa
     3001 atgatggaac aggctatgtg ccacttactc aactgcacgc caatcaaggg cgtttccaag
     3061 tatgggattc cgtactctct gaagaagcgg tactcgcctt tgaatatggc tttgccacta
     3121 ccgacccgaa aacactgacc atttgggaag ctcaatttgg agatttcgct aacggagctc
     3181 aaattgttat cgaccaattt atcagctcag gcgaacaaaa atggggcaga atgtgcggtt
     3241 tagtgatgtt attaccacac ggctatgaag gtcaagggcc ggaacactcc tctgcccgag
     3301 tggaacgcta tttacagctt tgtgctcagc aaaatattca agtttgcgtg ccatcaacac
     3361 cggcacaggt ttaccatatg ttacgccgtc aagcgatccg caaaatgcgt cgcccattgg
     3421 ttgcaatcac accaaaatca ttgctacgcc acccacttgc ggtgtcatct cttgatgaat
     3481 tgattaacgg ttcattccaa aatgtgattg gcgagctcga taatatcgat cctaaacaag
     3541 tcaaacgtgt ggtgatgtgt tcgggtaaag tgtactacga cttaattgaa aaacgccgtg
     3601 aaaataacca aacggacgtt gccattattc gtatcgaaca gctctacccg ttcccacttg
     3661 aagaaatgca acaaattctc gagccttacg ctcacgttaa agactttgtc tggtgtcaag
     3721 aagagccact aaaccaaggt gcgtggtatt gcagcaagca caattttgag gcttctctgc
     3781 cggaagatgc aaaattaact tacgcaggca gaccggcttc tgcttcaccg gcggtgggtt
     3841 atccatcgtt acacgcaaaa caacaaaaac aacttgttga agatgcttta acgatcgctg
     3901 aataataaaa tgggcgtata tacgccctac aagcggttca cttttaacca aattttacaa
     3961 tttacgctgt cggagtttta aaactctctc gaaaaaagga ataagttatg accattgaaa
     4021 ttttaacccc cgatttaccc gaatctgttg ccgatgcgac cgttgccact tggcataaaa
     4081 aagtgggcga caatgtaaaa cgtgatgaaa ttttagtcga aattgaaaca gacaaagtcg
     4141 ttttagaagt accggcttca agcgatggta ttcttgcaga aattacccaa gaacaaggtg
     4201 ctactgttgt atccaagcaa tctctgggta aattagtagt agctaaagcc ggtgatatta
     4261 gctctgcaac tattgagcaa aaaacagaat ccacgccatc agaccgcaaa cacgcagcaa
     4321 ttgaaaacag ccacgcgaac gctgatgatc aagggcctgc gattcgccgt ttattagccg
     4381 aacacgactt acaagccgct gatattcaag gcagtggtgt aggcggcaga atcacccgcg
     4441 aagatattga aaaagagatt gccaaacgag tgcaaatcaa ccaagtaaaa gggtctgcaa
     4501 ccagccaaaa caccgttagc actgtagcat ttaacagccg tagcgaaaaa cgtgtgccga
     4561 tgacacgact ccgcaaacgt attgccgaac gcttactaga ggcaaaaaac accactgcaa
     4621 tgctcactac ttttaacgag ctggatatgc aaccaattat gaatttacgc aaaacctatg
     4681 gcgaaaaatt cgaaaaacaa cacggtgtgc gtttaggctt tatgtcgttc tacattaaag
     4741 ccgtggttga agcattaaaa cgctaccctg aaatcaatgc ctccattgat ggcgatgatg
     4801 tggtttatca taactatttc gacatcagca ttgcggtttc taccccacga ggcttagtca
     4861 cacctgtgtt gcgtgattgc gacaaaatga gtatggcaga tattgagaag aaaattaaag
     4921 aacttgccga aaaagggcgt gacggcaaat taaccgttga agacttaacc ggcggtaact
     4981 ttaccatcac caacggcggg gtattcggtt cattaatgtc caccccaatt atcaacccgc
     5041 cacaaagtgc gattttgggt atgcacgcta ttaaagaccg ccctgtcgcc attgacggac
     5101 aagtagtgat ccgcccgatg atgtacctag ccttaagcta tgaccaccgt ttaattgacg
     5161 gtaaagaatc tgtcggtttc ttagtggcag ttaaagagtt attagaagac ccaacccgtc
     5221 ttcttttgga aatttaatcg aaaatatgac cgcttgtact tttagctaca agcggtctgt
     5281 ttttaataaa atttgacaaa atccgataaa cgctctattt gagttccctt ctgagccacc
     5341 tgagcgactt tgaatttgta ggaaaaattt agtgtttgag cttacaaggc aagcgagtta
     5401 taaatttttc cgtcaagcaa attcaaacta agcgaagaaa gtggcgaagc agggtgtgct
     5461 ttcttttggt tacttttctt tgcacaagca aagaaaagta acataaaaaa aaccaaacga
     5521 ggaaactcta tgaatctaca cgaatatcaa gcaaaacaaa tattcaaaca atacgggctt
     5581 cccgtaagcc aagggattgc ttgcaaaacg gcagaggaag ccgttgaggc aattaaacaa
     5641 ctacaaggtg aacaatgggc gataaagtgc caagttcacg ctggtgggcg tggcaaagcc
     5701 ggcggggtga aactggttcg caatgaagcc gaagtgcgtg aatttgccga taaatggctc
     5761 ggcaaacgct tagttacctt ccaaaccgat gctaatgggc aaccggttaa taccttatat
     5821 ttagaagaaa cctgcaatat cgaccgtgaa ttgtacttag gtgcagtggt tgatcgctcc
     5881 gctcaaaaag tgatttttat ggcatcaagt gccggtggta tgaatattga agaagtagcg
     5941 gagaaaaccc ctgaattaat tcacaaagcg gtaattgacc cactcaccgg tgggcagggt
     6001 tatcaagggc gtgaattagc atttaaatta ggcttgaaag gtgatgaagt taaacaattt
     6061 gcggatattt tcgtgaaact ggctaaccta tttgttgaaa aagatttagc tttattagag
     6121 gtaaatccac ttgtcatcac taaagaaggg caactactct gcttagatgc aaaaatgtcg
     6181 attgacagca atgctctcta ccgccaccca gaacttaaag agttgcaaga cccatcgcaa
     6241 gatgacgaac gtgaagctga agcggaaaaa tggaatctca actacgttgc actagatggc
     6301 aatatcggct gtatggtaaa cggtgcgggg ctggcaatgg ggacgatgga tatcgtcaaa
     6361 ctttatggtg gtaaaccggc taacttctta gacgttggcg gtggtgcaac caaagagcgt
     6421 gtagcagcag cttttaaatt gattttatct gatccgaatg tgaaagccgt gttagtcaat
     6481 atttttggtg gtatcgtccg ctgcgatttg attgctgatg gcgtcattgc tgctgtaaac
     6541 gaagtcggcg tgaatgtgcc tgttattgtg cgtttagaag gcactaatgc cgcacagggg
     6601 cgtgagattt tagccaatag cgggctgagt attctagcgg catcatcatt aaaacaagcg
     6661 gctgaattag cggtaaaatc tgcaaattag gaggaaaaat gtcgatttta attgataaaa
     6721 acacaaaagt aatttgccaa ggtttcaccg gcggacaagg tactttccac agcgaacaag
     6781 cccttgctta tggcacacaa ttagtcggcg gagtttcgcc gaataaaggt ggcacaaccc
     6841 atttaggctt accggttttc aacaccgtac gcgaagcggt agaagcaacc ggtgcaactg
     6901 caaccgttat ctacgttccg gctcccggct gtaaagatgc tattttagaa gccattgatg
     6961 ccggcatcca actaattgtc tgtattactg aaggcattcc aaccttggat atgctacaag
     7021 ttaaacaacg tctaaaccaa accggcgtgc gaatgatcgg tccgaactgc ccgggtgtga
     7081 ttacccctga tgagtgcaaa atcggcatta tgccgggcaa tatccacaaa aaaggcaata
     7141 tcggtattgt ttctcgttcg ggtactttaa cctatgaagc agttaaacaa acaactgacg
     7201 aaggctttgg tcaatctact tgtgtcggta tcggtggtga tccgattccg ggatctaact
     7261 ttattgacat tttaaaactg ttccaagacg atcctgaaac tgaagcaatt gtgatgattg
     7321 gtgaaatcgg cggctctgcc gaagaagaag cggcagcttt catcaaagaa aatgtcacca
     7381 agcctgtagt cagctatatt gccggtgtca ccgcaccaaa aggcaaacga atgggacacg
     7441 ccggtgcgat tatcagcggc ggcaaaggaa ccgccgatga aaaattcaaa atccttgaag
     7501 atgccggtgt gacaaccgtc agaagtttag ccgaaatcgg ttcagctctt agaaaaattt
     7561 taggctaaac taaaagttca agcagtcata tttacccatt tttttgtaaa tatgaccgct
     7621 tgtttttttg ctattaaatt actctttcga tttccaaatt aatgggtcaa cacctttatg
     7681 gataaggtct tgatgttctt caattctaaa cactggctct ttgccacttt tcacttggcg
     7741 aagatagtct tttaaaataa tccagacaat cggagcaaga attaagatag ccaccaagtt
     7801 aattaccgcc attgatgcca tcactgtatc ggcaaatgcc catacaatcc ctccgtctct
     7861 tactgcaccg aagtacacaa agaataaaac gatggcacgg aatccccaca caaaccacgg
     7921 actgttttta atgtagcgga tattagtttc tgcataagca tagttaccga taatggatgt
     7981 gaagcaaaac agtaaaatca caaatgctaa aaagtgtaaa ccaaattcac ctaaatggaa
     8041 ttgtaacgca ctttgagtaa gtgaaatacc tcttaaagtt tcaccaccat agttatttga
     8101 cataagaatg atcactgcag tacaagtaca gactacaatt gtatctacaa atacgcccaa
     8161 catttgaatt aagccttgac ttgccgggtg tttcgcatca gaagtcgctg cagaatttgg
     8221 tgcagatccc ataccagctt cgtttgagaa taagccacgt ttaatcccca ttagcatagt
     8281 tttggatacc aatgctccaa acgttccacc tgcagcagca gaaaaatcaa aggcgctttc
     8341 aataattaaa gagattatac ttggcacttt ttcaatattc atacctaaaa taattactgc
     8401 aataatcaag tagaataatg ccatcattgg aacaacttgg gcagaaactt taccaatacg
     8461 cttgacccct ccagaaataa ttaaccctgt aatcaccact aatgtcatgc ctacgtagac
     8521 tgggttccaa tcccacgcat ttttggttgc ttccacaata gagttagatt gcacagcatt
     8581 aaaagcaaaa ccaaaggtga agataagcgt cactgcaaaa gcaatagcaa gagaaggcag
     8641 ttttaaacca cgagtgatgt aataggctgg cccaccacga aacattccgt ttggatcttt
     8701 ggttttatac aactgagcca gtgaagactc agcaaaggcg gaactcattc ccattaaggc
     8761 ggtaatccac atccagaata ccgcacccgg cccacccaaa gcgattgcag tagctacccc
     8821 accaatatta ccaaccccaa cacggctggc taatccagta gtaaaggctt ggaacggagt
     8881 taatgatttc ccttccgtag aacgtcctcc ccacatttca cgtaaacttt gcggaagaag
     8941 acgcagctgg acaaaacctg ttgtaagagt gaaaaataac cctgcaccga gcaataggat
     9001 aatcgttaca tcccaaagtg gaccgtcgat tgtgttcaca atccaagtca gtacactctc
     9061 aaaaaataga ataattgaat ccataaagac ctcttaattg aaaa
//
LOCUS       DANLVT010000097         8938 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.097, whole genome shotgun sequence.
ACCESSION   DANLVT010000097 DANLVT010000000
VERSION     DANLVT010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8938)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8938)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8938
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.097"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(34..1869)
                     /gene="glmS"
                     /locus_tag="PXC99_001932"
     CDS             complement(34..1869)
                     /gene="glmS"
                     /locus_tag="PXC99_001932"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HDL5418364.1"
                     /translation="MCGIVGAVAQRDIAEILVDGLHRLEYRGYDSAGVAVLNADDKTM
                     QIVRRVGKVKALDEALDTKPLLGGTGIAHTRWATHGEPSETNAHPHRSGKIAVVHNGI
                     IENYEELKIVLQERGYVFQSQTDTEVIAHLVEWELRSASSLLEAVQKTVVQLRGAYGT
                     VVLNEEEPEHLIVARSGSPLVIGYGVGENFLASDPLALLSVTRRFAYLEEGDVAEITR
                     RTVDIYDREGNKAEREIHEGNFEADAADKGQYRHYMQKEIFEQPVAIMNTLDGRIKDG
                     KVDISAIAPNAAEILSKVEHVQIVACGTSYNAGMVSRYWFESIAGVSCDVEIASEFRY
                     RKFVTRPNSLLITLSQSGETADTLAALRLAKESGYMAAMTVCNVASSSLVRESDFAFL
                     TKAGVEIGVASTKAFTTQLTCLLLLNVAIGRLQGRMSEEQEHHIVQSLQRLPAQIESA
                     LVFDKQIEKLSEDFADKHHTLFLGRGEYYPVAMESALKLKEISYIHAEAYAAGELKHG
                     PLALIDSDMPVVVVAPENDLLEKVKSNIEEVRARGGQLYVFADHDAGFEEAEGFKTIV
                     MPKVDEVTAPIFYTVPLQLLSYHIALIKGTDVDQPRNLAKAVTVE"
     gene            complement(1917..2678)
                     /locus_tag="PXC99_001933"
     CDS             complement(1917..2678)
                     /locus_tag="PXC99_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR family transcriptional regulator"
                     /protein_id="HDL5418365.1"
                     /translation="MSKRNTQQRRHLIVQMVQEKNEVSVDELAHFFETSEVTIRKDLT
                     ALEESGFLLRKYGGAVKIPSEMMEEAFIEQLSIQKKMIAQAARDCIRDHNRIIIDSGS
                     TTGALVKALNQTGLVVMTNSLNLATELTSLECEPTVLMTGGTWDSRSESFQGKVAEQV
                     LRSYDFDQLFIGADGLDLARGTTTFNELVGLSQVMAEVSREVIVLIESQKIGRKMPNI
                     ELKWQNITKIITDSQLSFETKEQIEKMGVEVVIAK"
     gene            complement(2835..3035)
                     /locus_tag="PXC99_001934"
     CDS             complement(2835..3035)
                     /locus_tag="PXC99_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HDL5418366.1"
                     /translation="MKSILKVVGAMVLMVAVSGCNNMTKTQRNTAIGAAIGGVAGHAI
                     GESTGATLGGAALGGVIGSQIK"
     gene            3260..4294
                     /locus_tag="PXC99_001935"
     CDS             3260..4294
                     /locus_tag="PXC99_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5418367.1"
                     /translation="MKLKKLSLALSTLLLGSAFANSALAEGRLTVYCSATNELCEQEV
                     QAFGKKYNVKVAFVRNGSGSTLAKIEAEKNNPQADVWYGGTLDPHSQAAEMGLLEPYK
                     SPNLEQIIEKFRDPAKLKGNYSSAVYMGILGYGVNLDRIKKLGIEKVPSTWEDLLDPR
                     LAGEIQIADPQSSGTAYTAIATFVQLLGEEKAFDYFRKLHKNISQYTKSGITPARNTA
                     RGETAIGIGFLHDYAIEKKNGANIEMTAPTDGTGYELGGVSILKGARNLDNAKLFVDW
                     SLSKEAQELSWQKGNAFQVLTNTTAESSPYALDPKNLNLINYDFEKYGSSEERKRLID
                     KWVNEVKLAK"
     gene            4362..6398
                     /locus_tag="PXC99_001936"
     CDS             4362..6398
                     /locus_tag="PXC99_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016534092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5418368.1"
                     /translation="MQNFSFSRPLVWVLIGLLGFLLLPSKALDYGLFDSTSDELLAAM
                     GWASLNITWAWFLPLLVFLLPNSTACKTRAKLELVGLGVLFAFIFLSAIVLKISLGYA
                     VLPLIIAIMGLATPNLATLKVMQGDRFIIGSLLSIILLIFFFIVYPTIAIFVSMFYNG
                     SEFVPSQVLTILQQPYVVRVIGNSLSVAGTVGVLSTLFGLAFALYTTRIAKRSAFIGR
                     IFSILPIVTPPFVVGLGVTLMLGRSGYVTEFLVDYFGFANNWLYGFTGIVIAHTLALT
                     PMSFMILEGALKSIHPSVEEAAYTLRSNRYQAFFNIIFPLLKPALANSFLVVAIQSLA
                     DFSTPLVLGGSFDVIATQIYFYIAGSQLDYASASTLGAILLVFSLAIFVIQYLWIGNR
                     SYVTVSGKSYRGDVQDLPSGMKWLIICTLLFWGTFNLVLYGSIFYGSFTVNWGVDYTL
                     TLDNYIKLFGQGFSDGGFPSLIQTVIFAAAAAPITALFGLLIAYVTVRRDFKGKKTLE
                     FLTLLCFAVPGTVAGVSYILAFNDAPIYLTGTGMIIILSMVMRNMPVGMRAAIAGLGQ
                     LDKSLDEASLSLKAGSFKTMLFVVLPLLKPALLSALVTSFVRAMTTVSAIVFLVTADT
                     RVATSYILNRVEDGEYGIAIAYGSILIVVMMAIILIFDWIVGDTRIARSKAKKM"
     gene            6496..7545
                     /gene="fbpC"
                     /locus_tag="PXC99_001937"
     CDS             6496..7545
                     /gene="fbpC"
                     /locus_tag="PXC99_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric ABC transporter ATP-binding protein"
                     /protein_id="HDL5418369.1"
                     /translation="MNNDFLVLKNVTKSFGKVTVIDNLNLSIPQGKMVTLLGPSGCGK
                     TTVLRLVAGLENPTSGQIFIDGEDVTQSSIQHRDICIVFQSYALFPHMSIGDNVGYGL
                     KMQGVPKEERLQRVKEALELVDLGGFEDRFVDQISGGQQQRVALARALILKPKVLLFD
                     EPLSNLDANLRRSMREKIRELQQRLNITSLYVTHDQSEAFAVSDEVIVMNKGKIMQKA
                     PAKELYLRPNSLFLANFMGESSIFEGTIAGNQININGYQFTLANAEQFELPDGEYLVG
                     IRPEAIHLAEQGNISQLCKIKNAVYMGNHWEIIAEWEGKDLLVNTKPENFYPHIKQAY
                     VHFIEQGVFLLKKEL"
     gene            complement(7776..8918)
                     /gene="tuf"
                     /locus_tag="PXC99_001938"
     CDS             complement(7776..8918)
                     /gene="tuf"
                     /locus_tag="PXC99_001938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HDL5418370.1"
                     /translation="MGTIGHVDHGKTTLTAAITTVLAKHFGGAARAFDQIDNAPEEKA
                     RGITINTSHVEYDTATRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT
                     REHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGS
                     ALQALNGVAEWEEKILELANHLDTYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRV
                     ERGIIRTGDEVEIVGIKDTAKTTVTGVEMFRKLLDEGRAGENVGALLRGTKREEIERG
                     QVLAKPGSITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGV
                     EMVMPGDNIKMTVSLIHPIAMDEGLRFAIREGGRTVGAGVVAKIIK"
BASE COUNT         2400 a         2022 c         1824 g         2692 t
ORIGIN      
        1 aaaaccccaa gatatcttgg ggtttaacta acattactct acagtcaccg cttttgcaag
       61 gttacgaggt tggtcaacgt ccgttccttt gattaaggca atgtgatatg aaagtagttg
      121 taacggcacg gtgtagaaaa tcggtgcggt tacttcatca actttcggca ttacaatcgt
      181 tttgaagcct tctgcttctt caaaacctgc atcgtgatcg gcaaacacat ataactgacc
      241 gcctcttgca cgcacttctt caatattgga tttcactttc tcaagcaagt cattttccgg
      301 tgctaccacc actaccggca tatcgctatc aattaatgct aacgggccgt gttttaactc
      361 gcctgcggca taagcttctg cgtgaatata tgaaatctct tttaatttca atgcagattc
      421 catcgcaacc gggtaatatt ctccacgacc taagaacaat gtgtggtgtt tatccgcaaa
      481 atcttccgat aatttttcga tttgtttatc gaacactaac gcactttcaa tttgtgctgg
      541 taagcgttgt aaagattgca cgatatggtg ttcttgctct tcactcattc tgccttgtaa
      601 gcgtccaatc gccacattta ataacaataa gcaagttaat tgagtagtga atgctttggt
      661 tgatgctaca ccaatttcaa caccagcttt ggttaagaat gcaaaatcgg attcacgcac
      721 taatgaagaa cttgccacat tacacaccgt cattgccgcc atatagccag attctttcgc
      781 taaacgcagt gcagctaacg tatctgcggt ttcacctgat tgtgaaagcg tgattaataa
      841 gctgttcggg cgagtaacga atttacggta acggaattcg gaggcaattt ccacatcaca
      901 gctcacgcct gcaatggatt caaaccaata acgtgaaacc ataccagcat tgtaagaggt
      961 tccacaagcc acaatttgca cgtgttctac tttcgataaa atctctgccg cattcggtgc
     1021 aatggctgaa atatctactt taccgtcttt gatacgacca tctaaggtat tcataatcgc
     1081 aaccggctgc tcaaaaatct ctttttgcat atagtgacga tattgtcctt tatctgccgc
     1141 gtctgcctca aaattgcctt cgtgaatttc acgctctgcc ttgttgcctt cacggtcata
     1201 aatatccact gtgcgacggg taatttcggc tacatcacct tcttctagat aagcaaaacg
     1261 gcgagttacg cttaataatg caagtgggtc tgaagcaagg aagttctcgc ctacaccgta
     1321 accaatcact aacgggctac ctgagcgagc cacaattaaa tgctccggct cttcttcatt
     1381 taataccact gtgccgtaag caccacgcag ttgcaccacg gttttttgta ccgcttccaa
     1441 taatgaagaa gcagaacgca attcccattc aactaaatga gcaatgactt cggtatcggt
     1501 ttgagattgg aacacataac cacgctcttg taacactatt tttaactctt cgtagttttc
     1561 gataatcccg ttatgaacta ctgcaatttt gccactgcgg tgtgggtgag cattagtttc
     1621 tgacggctcg ccgtgcgttg cccagcgagt gtgtgcgatc ccagtgccgc ctaatagtgg
     1681 cttagtgtct aacgcctcat ctaaggcttt gactttaccg acacggcgta caatttgcat
     1741 tgttttatca tctgcattta atactgctac accagcagag tcatatccac ggtattctaa
     1801 gcgatgtaaa ccatcaacca agatttctgc gatatcacgt tgtgctactg cacctacaat
     1861 tccacacata aatttgcttt cctatgttta agtttaaaaa ttcatttgag ctactgctat
     1921 tttgcaataa ccacttcgac acccattttt tcgatttgtt ctttcgtttc aaaacttaat
     1981 tgactgtcgg taataatttt ggtaatattt tgccatttca attcaatatt cggcattttc
     2041 cgaccgattt tttgcgattc aattaacaca atcacttcac ggctcacttc tgccatcacc
     2101 tgacttaagc caactaattc attaaaggta gtcgtgcctc gagccaaatc taaaccgtcc
     2161 gcaccaataa aaagctgatc gaaatcatat gaacgcaata cctgttctgc tactttgcct
     2221 tgaaaggact cagaacggct atcccaagtg ccgccggtca tcaacactgt tggttcgcat
     2281 tcgagggaag tcaattccgt cgctaaattc agcgaatttg tcatcaccac caagccggtt
     2341 tggttcaatg cttttaccaa agctccggtc gtgctgccgc tgtcaataat gatgcgatta
     2401 tgatcacgaa tacaatcacg tgcggcttga gcaatcattt tcttttgaat cgaaagttgc
     2461 tcaataaacg cttcttccat catttccgat ggaattttta ccgccccacc atacttacgc
     2521 aataaaaaac cactttcttc caaagcggtt aaatcttttc taatcgtaac ttcagacgtc
     2581 tcaaagaaat gagcgagttc atctacactc acttcatttt tctcttgtac catttgaaca
     2641 attaaatggc ggcgttgttg cgtgttacgt tttgacatta taatcttcac ttaaatttcg
     2701 tttcaaaact tttgcattat aaagaaagct cgcgaaaaga aaagcagaaa atgcaaaatt
     2761 tacaaaatct atacaaaata aaaccgcttg taatattgat ttacaagcgg ttgatttctt
     2821 gaaatttttt gcaattattt gatttggcta ccaatcacgc caccaagtgc ggcaccacct
     2881 aaagttgcac cggtagattc accaatcgcg tgaccagcca caccgccaat tgctgcaccg
     2941 attgcagtat tacgttgcgt ttttgtcata ttgttacagc cagacacagc aaccattaat
     3001 accattgcac caacaacttt caaaatagat ttcataataa tccctcataa ttaatcaatt
     3061 tcaaataagc caatattctt ggctatgcta taagatttaa tttatttaga aaggttcaac
     3121 tactaccacc tatgaattgc aaattttttc acaatttagg ccgcttgttg attgaactgt
     3181 gagcttgctc acagaatttt atggtatttc ttgctatatt gtatagcaat ctatgcgata
     3241 actcattaag gaaataaaaa tgaaattaaa aaaattatct ttagcactct cgactttatt
     3301 actcggttca gcctttgcca actctgcttt agcggaaggt cgtttaaccg tttattgtag
     3361 tgccactaat gaactttgtg agcaagaagt gcaagcattc ggcaaaaaat ataatgttaa
     3421 agtagcattt gtgcgtaatg gttcaggcag tacattggcg aaaattgaag cggagaaaaa
     3481 caatcctcaa gctgatgtat ggtatggcgg tactttagat ccacattcac aagctgcaga
     3541 aatgggttta ctcgagccgt ataaatcacc gaatctcgaa caaattatcg aaaaattccg
     3601 tgatccggca aaattaaaag gcaactactc ttcggctgtg tatatgggga ttttaggtta
     3661 tggtgtgaat ttagaccgaa tcaaaaaact cggcattgaa aaagtgccta gcacttggga
     3721 agacttgctc gacccacgcc tagccggtga aatccaaatt gccgacccac aaagctccgg
     3781 cacggcttat actgcgattg cgaccttcgt acaactttta ggagaagaaa aagccttcga
     3841 ctatttccgc aaattacaca aaaacatttc acaatatacc aaatccggca tcacaccggc
     3901 acgcaatacc gcccgtggtg aaaccgctat cggtatcggt ttcttacacg actatgcgat
     3961 tgagaagaaa aacggggcta acattgaaat gaccgcacca acagacggca caggctacga
     4021 attaggtggt gtgagtatcc tcaaaggtgc aagaaatctt gataatgcaa aactgttcgt
     4081 ggattggtcg ctttctaaag aagctcaaga actctcttgg caaaaaggca atgcgttcca
     4141 agtattaacc aacaccaccg cagaatcttc cccttatgct ctagatccga aaaacttaaa
     4201 cttaatcaac tatgatttcg agaaatacgg ctcgagcgaa gagcgtaaac gcttgattga
     4261 taagtgggta aatgaagtaa aattagcgaa atagtgttaa tctttccact gaggggataa
     4321 gcaattatcc cctctctaat tataagaatc tgtgaggtgt tatgcagaat ttttcctttt
     4381 cccgaccgct tgtttgggtg cttatcgggt tactcggttt tctcttgtta ccgtctaaag
     4441 ccttagatta tgggctgttt gactcaacct ctgatgaact gctcgccgca atgggctggg
     4501 cgagtctgaa catcacttgg gcgtggtttt taccgctttt ggtattttta ttgccaaatt
     4561 cgaccgcttg taaaactaga gccaagctgg aattagtagg gctgggcgtg ctgttcgcct
     4621 ttattttcct gtcagcgatt gtgctgaaaa tcagcctcgg ttatgcggtg ttgccgttga
     4681 ttattgccat tatggggctt gcgaccccaa atttagcaac gctcaaagta atgcagggtg
     4741 accgctttat tatcggctcg ttactgagca ttattctgct gattttcttt tttattgtgt
     4801 atccgaccat cgccattttt gtgtcgatgt tctacaacgg ctcggaattt gtgccaagcc
     4861 aagtgctgac aattttgcaa caaccttatg tcgttcgagt catcggtaac tcgctctcgg
     4921 ttgccggcac ggtgggcgtt ctctccaccc tattcggctt agcctttgct ctctacacca
     4981 ctcggattgc taaacgctcg gcgtttatcg ggcggatttt ctcgatttta cctatcgtca
     5041 ccccgccgtt tgtggtcggt ttaggcgtaa ccctgatgct tgggcgttcc ggctatgtta
     5101 ctgaattttt agtggattac tttggctttg ccaacaattg gctgtacggt ttcaccggta
     5161 ttgtgatagc ccataccctc gcgctcacgc caatgtcgtt tatgattttg gaaggggcat
     5221 tgaaatccat tcacccatcg gtggaagaag cagcttacac cctgcgttcc aaccgctatc
     5281 aagccttttt taacattatt ttcccattgt taaaaccggc attggcaaac tcctttttag
     5341 tggtggcaat tcaatccctc gccgatttca gtacgccgtt agtattgggc ggtagctttg
     5401 atgtgattgc aacccaaatc tacttctaca ttgccggttc tcaactggat tatgcctctg
     5461 ctagcacgct tggggcaatt ttgttggtgt tctccttagc cattttcgtg atccaatacc
     5521 tctggatcgg caatcgctct tatgtgacgg tgtccggcaa atcctatcgg ggtgatgtcc
     5581 aagacttacc aagcggtatg aaatggctga ttatttgcac cttattgttc tggggaacct
     5641 tcaacttagt gctgtacggc agtattttct acggcagttt caccgtgaac tggggtgtgg
     5701 attatacctt aacccttgat aactacatca agctattcgg gcaagggttt agcgatggcg
     5761 gtttcccttc gttaattcaa accgtgattt tcgctgccgc tgccgccccg attactgcac
     5821 tattcggctt gctgatcgcc tatgtgacag ttcggcgtga tttcaaaggc aagaaaaccc
     5881 tggaattttt aaccctgctc tgctttgccg taccgggaac ggtggcaggt gtttcttaca
     5941 ttctcgcctt taacgatgcc ccgatttacc taaccggcac cggtatgatc atcattctct
     6001 caatggtaat gcggaatatg cctgtgggta tgcgagcggc aattgccggc ttagggcagt
     6061 tggataaatc gctggacgaa gcctcgctct cgctgaaagc cggttcgttc aaaacgatgc
     6121 tgtttgtggt gttaccgcta ctcaaaccgg cactgctctc cgccctcgtc accagctttg
     6181 tgcgggcaat gacgactgtc agtgcgattg tattcttagt caccgccgac actcgtgtgg
     6241 caacctccta cattctcaac cgtgtggaag acggtgaata cggcattgcg attgcctacg
     6301 gctcaatttt aattgtggtg atgatggcga ttatcctgat ttttgactgg attgtcggcg
     6361 acacccgtat cgcccgttct aaggcgaaaa aaatgtaaaa agacatctac tctctccctt
     6421 tatgggagag agacagaaaa atacttcgtt cagaagtatt tttcagagag agggatataa
     6481 ttaaaaggac aatatatgaa caacgatttc ttagtattaa aaaacgtcac caaatctttc
     6541 ggcaaggtga cggtcattga taatctcaac ctcagtattc cgcaaggtaa aatggtgaca
     6601 ttactcgggc cgtccggctg tggtaaaacc accgtactgc gtttagtggc agggctggaa
     6661 aacccgactt cggggcaaat ttttattgat ggcgaagatg ttacccaaag ttcgatccaa
     6721 caccgtgata tttgcattgt gttccaatct tatgcgttat ttccgcatat gtcgattggc
     6781 gataatgtcg gctacggctt gaaaatgcag ggcgtaccga aagaagaacg gctgcaacga
     6841 gtgaaagagg cgttggaatt ggtggattta ggcggctttg aagatcgctt tgtcgatcaa
     6901 atctctggcg gacaacaaca acgtgtcgcc ctcgcccgtg ccttaattct gaaaccgaaa
     6961 gtgctactgt tcgatgaacc gctgagtaac cttgacgcta acttacgccg ttcaatgcgg
     7021 gagaaaatcc gtgaattaca gcaacgttta aacattactt ccctttatgt gactcacgat
     7081 cagtccgaag cctttgcggt ttcagatgaa gtaattgtga tgaacaaggg aaaaattatg
     7141 caaaaagctc cagccaaaga gttatacctt cgccctaatt ctttattctt agcaaatttt
     7201 atgggtgaaa gcagcatttt tgaaggcacg atagctggca accaaattaa tataaatgga
     7261 tatcaattta cgttagcaaa tgctgaacaa tttgagttac ccgatgggga atacttagtt
     7321 ggcattcgtc cagaagctat tcatttagct gaacaaggaa atataagtca actctgtaaa
     7381 attaaaaatg cagtttatat gggaaatcat tgggaaatta tagctgaatg ggaagggaaa
     7441 gatttattag tcaatactaa acctgaaaat ttttaccctc atatcaaaca ggcctatgta
     7501 cattttatcg aacaaggtgt ttttctttta aagaaagagc tataacgaat ttatactaaa
     7561 ttaagaggaa ggtagttata actatttagc aattttgaga aaaataggcc gcatgcaaaa
     7621 tctcttgatg acaagcggtc ttttctcgcc gattttttgc aaatgaaatg atatgatatg
     7681 gctagcttaa tcggcataaa agcaaaagag gcataccttt cgatatgcct ctttctagtt
     7741 tttatttagc ttttcaattt atcaaacaat cttaattatt tgatgatttt agctacaacg
     7801 cccgcaccta ctgtacgacc accttcacga atcgcaaaac gtaaaccttc gtccatcgcg
     7861 attgggtgaa ttaggctaac agtcattttg atgttgtcgc ccggcattac catctctaca
     7921 ccttccggta attcgattgt acctgttacg tccgttgtac ggaagtagaa ctgtggacgg
     7981 taacctttga agaatggagt gtgacgacca ccttcttctt ttgataatac gtaaacttct
     8041 gattcgaagt ctgtgtgtgg agtgattgaa cccggtttcg ctaatacttg accacgttcg
     8101 atttcttcac gtttagtacc acgtaataat gcacctacgt tctcacccgc acgaccttcg
     8161 tctaataatt tacggaacat ctcaacacct gttacggttg ttttcgctgt atctttgata
     8221 cctacgattt caacttcatc accagtgcgg atgataccac gctcaacacg acctgttact
     8281 actgtaccac gacctgaaat tgagaatacg tcttcgattg gtaataagaa tggtttatca
     8341 atcgcacgct caggctctgg aatgtatgtg tctaagtggt ttgctaattc aaggattttc
     8401 tcttcccact ctgctacgcc gtttaacgct tgtaacgctg aaccacgtac gattggagtg
     8461 tcatcacctg ggaagtcgta ttgtgaaaga agttcacgca cttccatctc aactaattct
     8521 aataactctt cgtcatctac catgtcgcat ttgtttaaga atacgatgat gtatggtaca
     8581 cctacttggc gacctaataa gatgtgctca cgagtttgtg gcattggacc gtcagttgct
     8641 gctactacta agatagcgcc gtccatttgt gccgcaccgg taatcatgtt tttaacatag
     8701 tccgcgtgtc ccgggcagtc aacgtgtgcg tagtgacgag ttgctgtatc gtactcaacg
     8761 tgtgaagtgt tgatggtgat accacgcgct ttttcttctg gcgcgttatc gatttggtca
     8821 aatgcacgag ctgcaccacc gaagtgtttt gctaatacgg tagtgattgc tgctgttaaa
     8881 gttgttttac catggtcaac gtggccgatt gtacccacat taacgtgcgg ttttgtac
//
LOCUS       DANLVT010000098         8801 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.098, whole genome shotgun sequence.
ACCESSION   DANLVT010000098 DANLVT010000000
VERSION     DANLVT010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8801)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8801)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8801
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.098"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(50..823)
                     /locus_tag="PXC99_001939"
     CDS             complement(50..823)
                     /locus_tag="PXC99_001939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HDL5418371.1"
                     /translation="MNLSNALKLIKYNELDVLEVNHNKFKAKIALQGAQLLSWQPYNA
                     EQDVLWLSEIEPFRIGSAIRGGIPICYPWFGSIKEPAHGTARIQEWRLVEHTCSDENV
                     GLVFALENKAKMEMMLGETCELYFTHLDPEPAQLALHSYFNIGDIEKVEVQGLPTRCF
                     DKLTDQEVEVPSPRKISENVDCIYPAQAVNFIQDFANQRTIKVEHINATETVLWNPWH
                     NTVSAMTETAYQNMVCVETARINTLLQQNETLGVRVLVR"
     gene            972..5168
                     /locus_tag="PXC99_001940"
     CDS             972..5168
                     /locus_tag="PXC99_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL5418372.1"
                     /translation="MKTKTFTRSYLASFVTIVLSLPAVASVVRNDVDYQYFRDFAENK
                     GPFSVGSMNIDIKDNNGQLVGTMLHNLPMVDFSAMVRGGYSTLIAPQYLVSVAHNTGY
                     KNVQFGAAGYNPDSHHYTYKIVDRNDYEKVQGGLHPDYHTPRLNKLVTEVVPAAVTNA
                     GTSIKPYLNEERFPMFLRAGSGTQALRGKESNKTTGIAGAYEYLTGGTTLQLSKSSPD
                     HWLDYSSNLYQVSYGPLSTYALPGDSGSGSYAYDMNEKRWVLVGVLNFYNGMDNQFNR
                     SAIIRKDFHEKKFAEDIAGTINNTVQNAQFNWTAQGKSSSLSQSNNVQKLNVDLKDSS
                     IANQNTSLPQENHGKTINFNGKDATIVLKQDIDQGAGALNLNANLTIRPETDQTWQGA
                     GIIVGKDKKVNWQVKNPQGDRLSKLGEGTLYVNGRGQNLGDISVGDGIVILNQQADHQ
                     GRKQAFNTVGIVSGRPTVVLGSADQVNPDNIYFGFRGGRLDLNGNSIAFKRIQNSDKH
                     ARIVNHNRDHISTLIIQGQDPLTSNDLIWGKWASNSPADIYEYTNPYQNKRKDYFRLK
                     GNSRVYYPTNATSNDHWEFLSSNREQAIQKILDAKNLRQRYDTFNGFIGEDASNKTNG
                     ILNVVFDTKTEVNTEQDKLKNIYTMSGGFNLNGELTLKGGTLLLSGHPTPHAYDIKNK
                     HDVVRENDWQDSHFTAKNITVNKMAQLYIGRNVNEVNSHFTATDKAKLNLGFINRSTP
                     SCYDSEYTGTTHCEVQAVISDNIFANLATTAIKGNVKLQNHSQLNLGKANLTGSVQAD
                     QTTHITLANHSHWLNNGTSQIGHLTMEKGSILSLNDKFATTEIPVRFNKMIIQGNLKG
                     NGRINYTANLAKGESDHLQVDGIAEGNFVLAVRNSTTEANPKSSLNLLSLKNSNQEGN
                     KASISLENNYVDLGTYRYVLENRNHNYHLFNPLIPNSTSKEMNATSVSSIPKKESVTN
                     VPTLDKKETEQNLTQLQKDFSAHQLENQKAKQSMINAQSELRRLNSQLNVLQKYVNSR
                     RLGYYTQQAVLEQISIIQNKIKQTQTIFNDANATVKLTDQKLEEAKLALGSVNDLVLI
                     KASAPAMQATNQDTSMMNIIQADWISQYANTALSELSAQANSALQISNSLDRQLFKQS
                     DKFNVWSSVEHQKTEHKSDLYRPYKQQTNLTQLGIQMPIDNGLMFGVALSKNHANAEF
                     NEGVNGKSNLLMASLYGKWQSQQGTFISLDGSYGKAKNQLYLFGENHFTRRISSIGAN
                     IGHQFDLAGVQIQPTIGARYYHFSGQDYTLGGAKISSPNTHFMTYQAGLKASKTFSLD
                     DWKVEPSITTHYVDASNKRLAVNVNNNNINQRFGRYLKTEAGIRFEHNQWQFDLHAGF
                     INGNEIKKQHFAGVKLGYSW"
     gene            complement(5223..6317)
                     /gene="mobA"
                     /locus_tag="PXC99_001941"
     CDS             complement(5223..6317)
                     /gene="mobA"
                     /locus_tag="PXC99_001941"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HDL5418373.1"
                     /translation="MSKTIEERISAVILAGGLARRMNGVEKGLQLFEGKPLISHILAR
                     LSPQVSDIWLNVNRSIEQYQQLYPAFSYYQDSLPDFQGPLSGMLAGFEQIESDYLLFV
                     PCDTPFMPELLLQKLKTALRINNVQIAYAHDGERPHPTFALIHRSVQEDLKAYLGSNQ
                     QQLLAFFQSQKSVAVDFSEQKSAFTNVNTLEDLSRVSQFPVKNLAITGYSGTGKTTLL
                     EKLIPKLTACGIRVGLIKHSHHNVDVDKKGKDSYRLREAGANPTMIVCDERWALMTET
                     KQAVEFSQLIAKFNPQEVDLVFVEGFKHETLPKIQLHRKGIEKPLPELDQWTIATATD
                     YPLERENWLDINNIGGIADFIKNWLENKAS"
     gene            6404..6673
                     /locus_tag="PXC99_001942"
     CDS             6404..6673
                     /locus_tag="PXC99_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1040 family protein"
                     /protein_id="HDL5418374.1"
                     /translation="MKCERLEELLELLGEHWRKNPDLHLIDILQQLSVEVGEPDNFKA
                     LSDEVLIYQLKMRNAGKFEPIPGIKKDYEDDFKTALLRARGILND"
     gene            6737..7375
                     /locus_tag="PXC99_001943"
     CDS             6737..7375
                     /locus_tag="PXC99_001943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HDL5418375.1"
                     /translation="MKKLALKTAFVALSALFTFNSTAIAADPTAGKEYIEVRKAPSAQ
                     KEVVEFFSFYCPHCYDFELSYKIPSQIKEKLPSDSKLVQYHVNFLGRQSEDLTRAWAL
                     AMALGAEDKVKTALFEGAQKDAFKSMDDIRSVFLANGITAEQFDSGINSFAVNGLVNK
                     QVQLAEDFQIRGVPAFFVNGQYQLNLEGFADSSSTNDFIKRYVDAVVFLSKK"
     gene            7459..8235
                     /locus_tag="PXC99_001944"
     CDS             7459..8235
                     /locus_tag="PXC99_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HDL5418376.1"
                     /translation="MTKLSILNLVPIREGQTAKQAVDSMVKLAKHAESIGIERYWIAE
                     HHNMKNLASSATQLLIQHALSHTEKLRVGSGGVMLPNHSPYIVAEQYGTLETLYPNRV
                     ELGLGRAPGTDMRTATALRRNAQSLPFPDEISELKGYFEGTNSVSAYPAQGLNVPFYI
                     LGSSPESAYLAAERGLPYAFASHFAPRFMDDAVRIYRTHFKPSEVLDKPYVILGVNAI
                     AAETDQEAEQLATTQTQFFLNVVTNAQNYLQPPVESDDKV"
     gene            8245..8499
                     /locus_tag="PXC99_001945"
     CDS             8245..8499
                     /locus_tag="PXC99_001945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="luciferase"
                     /protein_id="HDL5418377.1"
                     /translation="MKAEIVPHFGPVSFQQNALYNQEKPVVRQMTACSLIGSRESIEQ
                     QLKSLKARIEIDEIMAVSYIFDEQKQHQSYTWLKEIADKV"
     gene            8501..8794
                     /locus_tag="PXC99_001946"
     CDS             8501..8794
                     /locus_tag="PXC99_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL5418378.1"
                     /translation="MSKTMQQKAADAHNMCKLKGDSMLDNSDRQIAFEAVYDSEEIAV
                     QAVEFFTQKAKSVETEPCDIQSEITPIIDGFLMKMWITFSCQAEVILFQMAVR"
BASE COUNT         2912 a         1758 c         1626 g         2505 t
ORIGIN      
        1 taaatttgta aacaatatta ctaattcagc tgcttgctct cattaaacac tatcgcacta
       61 aaaccctcac tcctagcgtt tcattttgtt gaagtagagt atttatccga gcggtttcca
      121 cacataccat attttgatac gccgtttctg tcatcgcact aacggtatta tgccaaggat
      181 tccaaagtac ggtttcggtc gcattaatat gctcaacttt aatggtgcgc tgatttgcaa
      241 aatcttgaat aaaattcacc gcttgtgccg gataaataca atccacattt tcacttatct
      301 tgcgaggtga tggcacttca acttcttgat cggttagctt atcaaaacag cgagttggca
      361 agccttgcac ttccactttt tcaatatcac caatattaaa ataagagtgc aatgccagtt
      421 gtgctggttc tggatctaaa tgggtaaaat ataactcaca agtttcgcct aacatcattt
      481 ccattttcgc tttattctct aaggcaaata ccaaaccgac attttcatca gaacaagtat
      541 gctcaactaa acgccattct tgaatgcgag ctgtgccgtg ggcaggctct tttattgaac
      601 cgaaccacgg ataacaaatt ggtataccgc cacgaatcgc agagccaatt ctaaacggtt
      661 ctatctcact taaccacagc acatcttgct ctgcattata cggctgccaa cttagcaatt
      721 gtgctccttg taatgcaatt ttagctttga atttattgtg attaacttct agcacgtcta
      781 attcattata tttgattaat tttaatgcat tactcaagtt cataatttat tcctttgatg
      841 actaaaataa ttgacagcaa acactactta gtaattttat ataaaataag ggaagacatc
      901 ttgccaaact atcagttata agacagaata gccagaattt tttattactt ataaggataa
      961 acttctcatt tatgaagacc aaaacattta ctcgttctta tcttgcttct tttgtaacaa
     1021 tcgtattaag tttacctgct gtagcatctg ttgtacgtaa tgatgtggac tatcaatact
     1081 tccgcgattt tgccgaaaat aaaggaccat tttcagttgg ttcaatgaat attgatatta
     1141 aagacaacaa tggacaactt gtaggcacga tgcttcataa tttaccaatg gttgatttta
     1201 gtgctatggt aagaggtgga tattctactt taattgcacc acaatattta gttagtgttg
     1261 cacataatac tggatataaa aatgttcaat ttggtgctgc aggttataac cctgattcac
     1321 atcactatac ttataaaatt gttgaccgca atgattatga aaaggttcaa ggagggttgc
     1381 acccagacta tcatactcct cgattaaata aattagtaac agaagttgtg cctgccgcag
     1441 tcaccaatgc aggtacatct attaaaccct acttaaatga agaacgcttc cctatgtttc
     1501 ttcgtgctgg ttcagggaca caagcgctaa gaggaaaaga aagtaataaa acaactggaa
     1561 tcgctggtgc ttatgaatat cttactggcg gtaccacatt acaattatct aaaagctccc
     1621 ctgatcactg gttagattat tcaagtaacc tttatcaagt aagctatgga ccactttcaa
     1681 cctatgcact acctggtgat agtggttcag gttcttacgc ctatgatatg aacgaaaaac
     1741 gatgggtatt agttggtgtg ctcaatttct ataatggtat ggataatcaa ttcaaccgct
     1801 ctgcgattat ccgtaaagat ttccacgaga aaaaatttgc cgaagatatt gcaggaacaa
     1861 tcaataatac cgtacaaaat gcacaattca attggactgc tcaaggtaaa tccagctctc
     1921 ttagtcaatc aaataatgtg caaaaactca acgttgatct aaaagatagt agcattgcaa
     1981 accaaaacac ttctctgcca caagaaaatc acggtaaaac cattaatttt aatggtaaag
     2041 atgcaactat tgtactaaaa caggatattg accaaggtgc aggtgcatta aatctgaacg
     2101 ctaatctcac tattcgtcct gaaacagacc aaacttggca aggtgcaggt attatcgtcg
     2161 gtaaagataa aaaagtgaat tggcaagtaa aaaatccaca aggcgatcgt ttatctaaac
     2221 tcggggaagg aacactctat gtaaatggac gtggacagaa tcttggcgat atcagtgtag
     2281 gtgatggtat tgtaatactt aaccagcaag ccgatcacca aggaagaaaa caggccttta
     2341 atacagtagg aatcgtaagt ggtcgcccca ctgttgtgct aggtagtgca gatcaagtta
     2401 atcccgataa tatttacttt ggatttcgcg gaggtcgttt agacctaaac ggtaacagca
     2461 tcgcctttaa acgtattcaa aacagcgata aacatgctcg tattgtaaac cacaatcgcg
     2521 atcacatttc taccttaata atacaaggcc aagatcctct cactagtaat gatcttatat
     2581 ggggaaaatg ggcaagtaat agcccagcag acatttacga atataccaat ccttatcaaa
     2641 ataaacgcaa agattacttc cgtctgaaag gtaattcgag agtatattat ccaacgaatg
     2701 ctacaagtaa cgatcactgg gaatttcttt ccagtaaccg cgagcaagca atacagaaaa
     2761 tcctagatgc caaaaactta agacagcgct atgacacgtt taatggtttt ataggggaag
     2821 atgcttccaa taaaactaat gggatattaa atgtcgtgtt tgatacaaaa acagaagtaa
     2881 atacagaaca agataaatta aagaatatct acacaatgtc gggaggattt aaccttaatg
     2941 gtgaactcac ccttaaaggt ggtacattgt tgctttctgg tcacccaacg ccacacgctt
     3001 atgatattaa gaataagcat gatgttgtgc gtgaaaacga ttggcaagac agccatttta
     3061 ctgctaaaaa tatcacggta aataaaatgg cacaactcta tatcgggaga aatgtcaatg
     3121 aagtaaatag tcactttact gcgactgata aagccaaact caatttagga tttattaatc
     3181 gttcaacgcc aagttgctat gattctgaat acacaggcac tacacattgt gaagtgcaag
     3241 cggtcatttc cgataatatt tttgcaaatc tagcaacaac cgccattaaa ggtaatgtta
     3301 aattacaaaa ccatagccaa ttaaatttag gcaaagcaaa cctcactggt tctgtacaag
     3361 ctgatcaaac aactcatatc actttagcaa atcacagtca ctggttaaac aatggtacga
     3421 gccagattgg gcatcttaca atggaaaaag ggtcgatcct tagcctaaac gataaatttg
     3481 ctaccacgga aatcccagtc cgattcaaca agatgatcat ccaaggtaat ctaaaaggta
     3541 atggacgaat taactatacc gcaaatttag ccaagggcga atctgatcat ctccaagttg
     3601 acggtattgc tgaaggaaat tttgtccttg ccgttagaaa tagcacaact gaagcaaatc
     3661 caaaaagctc attaaaccta ctaagcttaa aaaatagcaa ccaagaaggc aataaagctt
     3721 ctatttctct agaaaataat tatgttgatc taggtactta tcgttatgta ttagaaaatc
     3781 gtaatcacaa ttaccattta tttaatccat taataccaaa ttcaacctct aaagagatga
     3841 atgctacatc tgtatcctct attccaaaaa aggaatctgt tactaatgtt cctactttag
     3901 ataagaaaga aactgaacaa aatcttactc aactacaaaa agatttttca gcacaccaat
     3961 tagaaaatca aaaagcaaaa caatctatga taaatgctca atctgagcta agacgactca
     4021 attcacaact gaatgtattg caaaaatatg tgaattctcg tcgcttaggt tactatactc
     4081 agcaggcagt tttagaacaa attagcatta ttcaaaataa aattaaacaa acacaaacaa
     4141 tatttaatga cgctaatgca actgtaaaac tcacagatca aaagctagaa gaagccaaat
     4201 tagctctagg ctctgtaaac gatcttgtat taataaaagc ctctgctcca gcaatgcaag
     4261 caactaatca agatacgagt atgatgaata ttattcaagc agattggata agccaatacg
     4321 ctaacacagc actttctgaa ctctcggcac aggctaattc tgctctgcaa atcagtaata
     4381 gcttagatcg ccaactcttc aaacaaagcg ataaattcaa cgtatggagc agcgtcgaac
     4441 atcagaaaac cgagcataaa tcagatttat accgcccgta taaacaacaa accaacctga
     4501 cccaactggg catacaaatg ccgatagata acggtttaat gtttggagtt gcattatcta
     4561 aaaaccacgc taacgcggaa tttaacgagg gtgtaaacgg taaatcgaat ctactaatgg
     4621 caagcctata tggtaagtgg caatctcaac aaggcacttt tatcagcctt gatggcagct
     4681 acggtaaagc aaaaaaccaa ctctacctat ttggtgaaaa ccactttacc cgccgaattt
     4741 cctctattgg tgctaacatt ggacatcaat ttgacctcgc aggagttcaa attcagccaa
     4801 caataggagc aagatactac catttcagcg gccaagacta tacactagga ggagcgaaaa
     4861 tcagctcacc aaatacccac tttatgacat atcaagcggg tctaaaagct agtaaaacct
     4921 tttcattgga tgactggaaa gttgaaccaa gcattacaac ccactatgtg gatgcaagta
     4981 acaaacgctt agcagtaaac gtcaataata acaatatcaa ccaacgtttc ggtcgctatc
     5041 tgaaaaccga agctggtatc cgatttgaac ataaccaatg gcaattcgac ttacacgctg
     5101 gtttcattaa cggcaacgaa atcaaaaaac aacattttgc tggtgttaag ctaggatata
     5161 gctggtaaga aaaagcccct agaactattt ctaggggctt tttctactct taaaaagagt
     5221 atctaacttg ccttattttc taaccaattc ttaataaaat ctgctattcc cccaatatta
     5281 ttaatatcca accaattttc tctctcaagc gggtaatccg ttgcggtggc aatcgtccat
     5341 tggtctagct ctggcaatgg tttttcaatc cctttgcggt ggagctgaat ttttggcaag
     5401 gtttcgtgtt taaagccttc tacgaaaacg agatcaacct cttgcgggtt gaattttgca
     5461 attaattgag aaaattcgac cgcttgtttg gtttctgtca ttaatgccca acgttcatcg
     5521 cacacaatca ttgtcgggtt tgctcctgct tcacgtaggc ggtagctgtc tttgcctttt
     5581 ttatctacat caacgttatg gtgggaatgt ttaatcagcc caacccgaat accgcaagcg
     5641 gtcaattttg ggattaattt ttccaataag gtggttttac ctgtgccgct gtagcctgta
     5701 attgcaaggt tttttacagg gaattggctt actcggctta aatcttccaa tgtattcacg
     5761 ttggtgaatg ccgatttttg ttcggaaaaa tcaactgcca cgcttttttg tgattggaag
     5821 aacgcaagca attgctgttg gtttgagcct aaataggctt tcaaatcttc ttgtaccgaa
     5881 cgatgaatca acgcaaaagt gggatgtgga cgctcaccat catgggcata tgcaatttgt
     5941 acgttattta tccgcaaagc agtttttaat ttttgcaata acagctcagg cataaagggc
     6001 gtatcgcaag gcacaaaaag caaatagtca ctttcaattt gctcaaatcc tgccagcatt
     6061 ccactgagtg gaccttgaaa atcaggcaag ctatcttgat agtaagaaaa agcaggataa
     6121 agctgctgat attgctcaat agaacgattg acattaagcc aaatgtcact aacttgtggt
     6181 gaaagtcggg ctaaaatgtg tgaaataagc ggttttcctt caaaaagttg taaccctttt
     6241 tctaccccat tcattcgacg agctaaaccg cccgctaaaa tcacggctga aatgcgttct
     6301 tctattgttt tactcacagc tttatccctt aaaattttgc aaaaataaga gtaaaagtat
     6361 attatttcgt ttaatttcca acaagttttt taaggggtaa aagatgaaat gcgaacgttt
     6421 agaagagtta ttagagttac ttggcgaaca ttggcgtaaa aatcctgact tacacctcat
     6481 tgatattttg cagcagcttt cagttgaagt gggcgagcct gataatttca aagcgttaag
     6541 cgatgaagtg ttaatctatc agcttaaaat gcgaaatgca ggcaaatttg agcctattcc
     6601 cggcataaaa aaagattatg aagatgattt taaaacggct ttattgcgag ctcgtggaat
     6661 tttaaacgat taagattgtc ttatccgtta gctagtttag catttattat ttatcaacat
     6721 ttttgaagga atcattatga aaaaattggc attaaaaacg gcatttgttg cactttctgc
     6781 cctttttaca tttaactcaa cggcaatcgc tgctgatcca accgcaggca aagaatatat
     6841 cgaagtgcgt aaagcacctt ctgcacaaaa agaagtggtg gaatttttct cattctactg
     6901 cccacactgt tatgattttg aattaagcta caaaatccca agccaaatca aagaaaaatt
     6961 accaagcgat agcaaattag tgcaatatca cgttaatttc ttaggtcgcc aatctgaaga
     7021 tttaactcgt gcttgggcat tagcaatggc attaggtgcg gaagataaag taaaaaccgc
     7081 attatttgaa ggtgctcaaa aagacgcatt caaatcaatg gacgatattc gctctgtatt
     7141 cttagcaaac ggcattacag ctgaacagtt tgatagcggt attaatagct ttgcggtaaa
     7201 tggcttagtg aataaacaag ttcaattagc ggaagacttc caaattcgtg gtgtgcctgc
     7261 attcttcgta aatggtcaat accaactcaa cttagaaggc tttgcagatt cttcatcaac
     7321 gaatgatttc atcaaacgtt atgttgatgc ggttgtgttc ttaagcaaga aataacccct
     7381 taaaatagtt agggttttta caatgctgag taggtaaatc ctattcagca ttttttatat
     7441 gcaaactcgg agaacaaaat gacaaagtta tctatcctaa accttgtacc tattcgtgaa
     7501 gggcaaactg ccaaacaagc ggtcgattct atggtgaaat tagcaaaaca cgcggaaagt
     7561 atcggcattg aacgctattg gattgcagag caccacaata tgaaaaacct tgccagctcg
     7621 gcaacacagc tcctcattca gcatgccctt tctcacactg aaaaattaag agtgggatca
     7681 ggtggcgtga tgttgcctaa ccatagtcct tatattgtgg cagagcaata cggtacgctt
     7741 gaaacactct accctaaccg tgtagaactt gggcttgggc gagcaccagg caccgatatg
     7801 cgaaccgcta ccgctttacg ccgtaatgca caaagtctgc catttcctga tgaaatcagc
     7861 gaactaaaag gttattttga aggcacaaat tctgtgtctg cctaccctgc acaggggttg
     7921 aatgtgccgt tttatatttt aggctcaagc cctgaaagtg cctatttagc agcagaacgt
     7981 ggcttgcctt atgcctttgc ttcacatttc gctcctcgtt ttatggacga tgcggtgcga
     8041 atttatcgca cacactttaa gccgtctgaa gtgttagata aaccctatgt gattttaggt
     8101 gtgaatgcga ttgcggcaga aaccgaccaa gaggcagaac agcttgctac cactcagact
     8161 cagtttttct taaatgttgt taccaatgcc caaaactatt tacaaccgcc cgtcgaatcc
     8221 gatgataaag tgtgaaaaaa ttttgtgaaa gcggaaatcg taccgcattt cgggcctgtt
     8281 tcgttccaac aaaatgcgtt atacaaccaa gagaaacccg ttgttcgcca aatgactgct
     8341 tgttcactta tcggtagccg agagagcatt gaacaacagc tcaagtcatt aaaagcacgc
     8401 attgaaattg atgaaattat ggcggtaagc tacattttcg atgagcaaaa acagcatcaa
     8461 tcctatactt ggttaaaaga gattgcagat aaggtgtgat atgagcaaaa caatgcaaca
     8521 aaaagccgct gatgcacata atatgtgtaa gctaaaaggc gactctatgt tagataactc
     8581 agaccgccaa attgcctttg aagcagtgta tgatagtgaa gaaatagctg tacaagcggt
     8641 cgaatttttc acacaaaaag caaaatcggt agaaaccgag ccttgcgaca ttcaaagtga
     8701 aatcacaccc attatagatg gctttctgat gaaaatgtgg ataactttca gttgccaagc
     8761 agaagtaatc ttatttcaaa tggcggtgag atagatataa a
//
LOCUS       DANLVT010000099         8756 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.099, whole genome shotgun sequence.
ACCESSION   DANLVT010000099 DANLVT010000000
VERSION     DANLVT010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8756)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8756)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8756
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.099"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            18..1031
                     /gene="cas1c"
                     /locus_tag="PXC99_001947"
     CDS             18..1031
                     /gene="cas1c"
                     /locus_tag="PXC99_001947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003762781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated endonuclease Cas1"
                     /protein_id="HDL5418379.1"
                     /translation="MRKLQNTLYITTQGSYLHKERETLVVEQDRKKVAQLPIHSIGHI
                     FCFGNVLVSPFLMGFCGENNVNLAFFTENGRYLGRLQGRQSGNVLLRRAQYKKSETNP
                     VPVARNIIAAKIQASKRVLQRQIRNHGENADLQSTITALNYSLQQLKTADNLDLIRGI
                     EGDAAARYFGVFSHLIKENSGFHFDGRNRRPPRDGVNALLSFLYSIVGKDISGALQGV
                     GLDPQIGFLHADRSGRDSLAQDILEEFRAWWVDRMVLSLINRGQVKPDDFVTEASGAV
                     TLKPEARKLLFQTLQAKKQEKIIHPFLEEEVEIGLLPYIQAMLLARHLRGDLAEYPPF
                     LMR"
     gene            1098..1391
                     /gene="cas2"
                     /locus_tag="PXC99_001948"
     CDS             1098..1391
                     /gene="cas2"
                     /locus_tag="PXC99_001948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005540845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HDL5418380.1"
                     /translation="MLMLITYDISFDDPEGQARLRRIAKHCLDYGVRAQYSVFECDVT
                     PAQWVTLKNKLLATYNPDCDSLRFYHLGSKWRNKVEHHGAKPSVDIFKDTLIL"
     repeat_region   1583..2550
                     /inference="COORDINATES: alignment:crt:1.2"
                     /inference="COORDINATES: alignment:pilercr:v1.02"
                     /rpt_family="CRISPR"
                     /rpt_type=direct
                     /rpt_unit_range=1583..1602
                     /rpt_unit_seq="cagccacctacgcgtggctg"
     gene            2800..4275
                     /gene="rng"
                     /locus_tag="PXC99_001949"
     CDS             2800..4275
                     /gene="rng"
                     /locus_tag="PXC99_001949"
                     /EC_number="3.1.26.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="HDL5418381.1"
                     /translation="MSSTELLVNVTPSETRVALVENGILKELHIEREAKRGIVGNIYK
                     GRVTRVLPGMQSAFVDIGLEKAAFLHASDIVSHTECVDENEKKQFLVKDISELVREGQ
                     DIVVQVVKDPIGTKGARLTTDITLPSRYLVFMPENSHVGVSQRIESEEERARLKSLVE
                     PYCDELGGFIVRTAAEEATEESLKQDVEFLKRLWRKVLERKGKYSAKSMLYGELALAQ
                     RVLRDFIGTHINSVRIDSKLTYEQVREFLAEFMPELTDCVTLYTGQQTLFDAYGVEKA
                     IQKALDKRVDLKSGGYLIIEQTEAMTTIDINTGAFVGHRNLAHTIFNTNIEAIQAIAH
                     QLQLRNLGGIIIIDFIDMQEEEHRERVLQSLQEALKGDRVKTNVNGFTQLGLVEMTRK
                     RTRESLERILCCDCQACQGRGTVKTVETVCYEIMREIVRVHHLFKTENIHVYAAKDVA
                     EYLINEESHALLAELQAFIGKKIEIKLEPYYHQEQFDVVVM"
     gene            4429..5931
                     /gene="lysS"
                     /locus_tag="PXC99_001950"
     CDS             4429..5931
                     /gene="lysS"
                     /locus_tag="PXC99_001950"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012054447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HDL5418382.1"
                     /translation="MSEVENQELDLNGEMLARREKLNKIREQGNAFPNTFRRDALAKD
                     LHAQYDAVEGETLKEQNIQVKVAGRIMLKRVMGKASFFTIQDVSGAIQLYVARDNLSD
                     SVYEEKVSLWDLGDIVGVEGALFKTKTGELTVRCSEVQLLTKSLRPLPDKHHGLTDLE
                     TRYRQRYLDLISNEESRRTFMIRSQVVSGIRKFFLERDFIEVETPMLQVIPGGAAAKP
                     FITHHNALDVDMYLRIAPELYLKRLVVGGFERVFELNRNFRNEGVSVRHNPEFTMIEY
                     YQAYADYHDLMDNTEELLRQLALDILGTTDVPYGDYVFDFGKPFERITMHDAIVKYGN
                     GIQREDLDSFEKSVEIAKGLGIEIQKSWGLGSVVNAIFEEVAEHQLIQPTFLMAHPAE
                     ISPLARRNDENPEVTDRFELFIGGREIGNGFSELNDAEDQAERFDAQVAAKDAGDDEA
                     MFKDEDFIVALEHGLPPTAGEGLGIDRLVMIFANAPSIRDVILFPAMRQK"
     gene            complement(6009..7082)
                     /locus_tag="PXC99_001951"
     CDS             complement(6009..7082)
                     /locus_tag="PXC99_001951"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HDL5418383.1"
                     /translation="MAQQITLFEDVPLPLTLGGELSPITVAYQTYGRLNAEKSNAVLL
                     CHALTGDAKPYYDSPTEKGWWQDFIGKGLAFDTDKYFFICSNVLGGCKGTTGPASINP
                     KTNKPYGSLFPIITVQDIVNVQKALLDYLEIPQLHAVVGGSFGGMQATQWGISYPDKV
                     RNIINLCSSLTLSAEAIGFNHVMRQAIINDPHFNGGNYYDGIAPDNGLKIARMLGMLT
                     YRTDIQLAKAFGRETKQQGQIWGDHFQVESYLSYQGTKFLGRFDANTYLRLLRALDLY
                     DPALGYENEETALKRIKANYTFVAVTSDQLFKQVDVYKSKQKLEQAGVNLEFHEFHSD
                     FGHDAFLVDYDFFEPMIKAGLAK"
     gene            7350..8033
                     /locus_tag="PXC99_001952"
     CDS             7350..8033
                     /locus_tag="PXC99_001952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL5418384.1"
                     /translation="MNQTRDRLEKLPLFHKMQQFIIKALKIIAIFPLLGIAILLVVDS
                     LTSYIVRDKIYTDSKQIPYREYAVVLGTAKFYSKDVINQYYKYRLEAAKQLVQEGKVN
                     QLLLSGDNKTPYYNEPKTMTSDLLKMGIATSKIKQDYAGYTTFYSIIRAKKVYKLPPF
                     TIISQKFHCERALFIAKFRDIDAICYAATYPEGAYQVRMREILARSAMVFSLLIGKEP
                     ESLEDIRSK"
     gene            complement(8070..>8756)
                     /gene="purU"
                     /locus_tag="PXC99_001953"
     CDS             complement(8070..>8756)
                     /gene="purU"
                     /locus_tag="PXC99_001953"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005641775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HDL5418385.1"
                     /translation="ELNGIFNDETLLTDLKFTLPEGSSYKLLPKQRKRIVILVTKEAH
                     CLGDLLMKNYYGGLDVEIAAVIGNHETLKSLVERFDIPFHLVSHENLTRVEHDKLLAE
                     KIDEYSPDYIVLAKYMRVLNPEFVARYPNRVVNIHHSFLPAFIGAKPYHRAYERGVKI
                     IGATAHFVNDELDEGPIIMQNVINVDHTYTAEAMMRAGRDVEKTVLSQALELVLADKV
                     FVYKNKTIIL"
BASE COUNT         2618 a         1585 c         1946 g         2607 t
ORIGIN      
        1 taaagggatt ttcaaccatg cgcaaactac aaaacaccct ctacattacc acccaaggta
       61 gctatttgca caaagagcga gaaaccttgg tggtggagca agatcggaag aaagtggcac
      121 agttgccgat tcattccatt gggcatattt tttgttttgg caatgtgtta gtgtcgccgt
      181 ttttaatggg attttgtggc gaaaataacg taaatttagc gttttttacc gaaaatgggc
      241 gttatcttgg gcggttgcag gggcggcaaa gtggtaatgt attgttacgc cgagcccagt
      301 ataaaaagtc ggagaccaac cctgttcctg tggctcgcaa catcattgca gccaaaattc
      361 aagcatctaa gcgggtgtta caacggcaaa ttcgtaatca cggcgaaaat gctgaccttc
      421 aatcgacaat taccgcatta aattacagcc tgcaacagtt gaaaacagca gacaatttgg
      481 atttgattcg tggcattgag ggcgatgctg cggctcgtta ttttggggtg ttttctcatc
      541 ttatcaaaga aaatagcggt ttccactttg acggacgtaa tcgccgccca cctcgtgacg
      601 gtgtgaatgc gttgctttca tttctttata gcattgtagg gaaagatatt agcggggcat
      661 tgcaaggcgt ggggcttgat ccccagattg gctttttgca tgcagatcgt tcggggcgag
      721 atagcttagc tcaagatatt ttggaggaat ttcgagcgtg gtgggtggac agaatggtgc
      781 tgtcgctgat caatcgaggg caggttaagc ctgatgattt tgtgacggaa gccagtggtg
      841 cggtaacgct caagcctgaa gccagaaaat tactatttca aaccttgcaa gcgaaaaaac
      901 aagaaaaaat catccaccca tttttagagg aagaagtgga aatcggcttg ttaccttata
      961 tccaagcgat gttattggct cgtcatttgc gtggcgattt ggcagaatat ccgccgtttt
     1021 taatgcgtta aaatctgcaa aattttgttg aaatttgacc gcttgtttat gttttattca
     1081 ttgaggaatt agcaactatg ctgatgttga ttacctacga catttcattt gatgaccccg
     1141 aagggcaggc tcgcctacgc cgtattgcta agcattgttt ggattatggt gtgcgggcgc
     1201 aatattctgt gtttgagtgt gatgttactc ctgctcagtg ggtaacattg aaaaataaat
     1261 tattggcaac ttacaaccca gactgtgata gtttgcgctt ttaccattta ggcagtaaat
     1321 ggaggaataa agttgagcac catggcgcaa aaccttcagt ggatattttt aaagatacgc
     1381 tgattttata aatcgctagc ctgtagttct cataaaaatg tagcaaggtt agcgaatcta
     1441 tattgttctt taataatcaa ggaattagaa aaaataaggc acaatatatt ggcgatatgc
     1501 tatactttat ccactctcta caaaacgtta gcgaataaag ggctaaaaag cctgatattt
     1561 caatacgtta tcttataggg accagccacc tacgcgtggc tgcgaattga aaccctataa
     1621 cgagcaatgg cattttgatc tacggtaaac cagccaccta cgcgtggctg cgaattgaaa
     1681 cttcttgaat acctccggag tcagttaaga taaggccagc cacctacgcg tggctgcgaa
     1741 ttgaaacctt tttcaagaat caagattaag agatccaaac aaccagccac ctacgcgtgg
     1801 ctgcgaattg aaacgtggca cagtaacacg agcagatgct gataaacgcc cagccaccta
     1861 cgcgtggctg cgaattgaaa ccagcagccg ttgttaccgt ggtgcaatgc ttgcgccagc
     1921 cacctacgcg tggctgcgaa ttgaaactac acttattgcc atagggtagt agtaatcttt
     1981 tacccagcca cctacgcgtg gctgcgaatt gaaactgcga tttttggatt tttcgggcga
     2041 taaatgatac cagccaccta cgcgtggctg tgaattgaaa ctcgtggctg gttatacaaa
     2101 gaaaagcatt gttgggcagc cacctacgcg tggctgtgaa ttgaaactta aatctaaagc
     2161 taaagctatt ttattaatta aagcagccac ctacgcgtgg ctgtgaattg aaactttacc
     2221 gtttaccgat tggattttaa tgctagaggc agccacctac gcgtggctgt gaattgaaac
     2281 cctaaattgc cgtaaaaatc tgccattagc tacgcgcagc cacctacgcg tggctgtgaa
     2341 ttgaaacagg ggcgtgtacc gcaatcaatt ttaattataa ccaagcagcc acctacgcgt
     2401 ggctgtgaat tgaaacttta tctgttgcgg tcaattgtat atcttgaatt tgcagccacc
     2461 tacgcgtggc tgtgaattga aacctcgtct tgaattggaa aatcaagggc gacaataggc
     2521 agccaccttc gcgtggctgt gtattgaaac ggtgtaccca caaatcctat gttttcgcca
     2581 ttggctgcta ccttcgcatc aatatatatt gaaatatcaa tggcaaattt gtatgttgtt
     2641 aattagactg attgcatctg ctatgtatca tagtaatgac gaaaatattc tattttgcaa
     2701 aaaataatca gaaattaccc gcttgttcga actgagtttt tgttttctaa gatgtgaaat
     2761 gatacacttt agatagtttt aaaatataga gacagtaaga tgagtagtac ggaattatta
     2821 gtgaatgtta ccccaagcga aacaagggta gcgttggtag aaaacggaat attgaaagaa
     2881 ttacatattg agcgggaagc taaacgcggg attgttggta atatttataa gggaagggtg
     2941 acaagggtat taccaggtat gcaatctgct tttgtggata tcggcttgga gaaggctgct
     3001 tttttgcacg cttctgacat cgtttcgcat acggaatgtg ttgatgaaaa tgaaaagaag
     3061 caatttctgg ttaaagatat ttctgaattg gtgcgtgaag ggcaagatat agttgtacaa
     3121 gtagtgaaag atccaattgg tactaaagga gctaggctca ctactgatat tacgttacca
     3181 tctcgttatt tagtgtttat gccagaaaat agccatgtgg gagtatctca gcggattgaa
     3241 agtgaagaag agcgtgctcg tttaaaaagc ttggttgagc cttattgtga tgaacttggg
     3301 ggctttattg tacgtaccgc tgcagaagag gcaactgaag aaagtttaaa gcaagatgtt
     3361 gaatttttaa aacggttgtg gcgtaaagta ttagaacgaa aagggaaata ttccgcaaaa
     3421 tcaatgcttt atggagagct tgcgcttgct caaagggtac tgcgtgattt tattggtaca
     3481 catatcaatt cggttagaat cgattcaaag ctaacttatg agcaagtgcg agaattttta
     3541 gctgagttta tgccagaatt aacggattgt gtcaccctct ataccggtca gcaaacttta
     3601 tttgatgcct atggtgtaga aaaggcaatc caaaaggcat tggataaacg ggttgattta
     3661 aaatcggggg gctatttaat tattgagcaa actgaggcga tgacgactat tgatattaat
     3721 actggtgctt ttgtcggaca tcgtaacctt gcacatacga ttttcaacac aaatattgaa
     3781 gcaatacagg caattgcaca ccagctacag ttgcgtaatt taggtggtat tatcattatt
     3841 gattttattg atatgcaaga ggaagaacat cgtgagcgcg ttttacaatc gttacaagag
     3901 gcattaaaag gcgatcgtgt taaaaccaat gtgaatggct ttactcagct tggcttggtg
     3961 gagatgacca gaaaacgtac aagggagagt ctagagcgaa ttctttgttg cgattgccaa
     4021 gcttgccaag ggcgtggcac agtgaaaact gtagagacgg tttgctatga aattatgcgt
     4081 gaaattgtgc gtgtacatca tttgtttaag acagaaaata ttcacgttta tgcagctaaa
     4141 gatgttgctg aatatttaat taacgaggaa agccacgcat tattggctga gcttcaggcg
     4201 tttatcggta aaaaaattga gattaaactt gagccatatt atcatcaaga gcagtttgat
     4261 gtggtcgtga tgtaatctat tacttggttg aggctaaata gttagcctca atatcgttag
     4321 ttacaaaaaa tttagaaaat ctgaccgctt gtttcctatc caaattcctc aaaataacgt
     4381 ataatcgtcc agttttattt atcctttttt gaaatctaag gtaattcaat gtctgaagta
     4441 gaaaatcaag aattagatct aaacggtgaa atgttagccc gccgtgaaaa attaaacaaa
     4501 atccgtgagc agggtaacgc atttccaaat acattccgtc gtgatgcgtt agccaaagat
     4561 ctgcacgctc aatatgatgc agtggaaggt gaaaccttaa aagaacagaa tattcaagtg
     4621 aaagttgccg gtcgtattat gttaaaacga gtaatgggta aggcatcttt ctttaccatt
     4681 caagatgtga gcggtgcgat tcagctttat gtagctcgtg ataacttaag tgacagcgtt
     4741 tacgaagaaa aagtcagcct ttgggattta ggcgacattg tgggcgtcga aggtgcgtta
     4801 tttaaaacca aaaccggtga attaacggtt cgttgctctg aagttcaact tttaaccaag
     4861 tctttacgcc cgttgccgga taaacatcac ggtttaacgg atttagaaac tcgttatcgt
     4921 cagcgttatt tagacttgat ttctaatgaa gaatctcgcc gtacttttat gatccgctcg
     4981 caagtagttt caggcattcg caaattcttc ttagaaagag actttattga agttgaaacg
     5041 ccaatgttgc aagtgatccc gggcggtgcg gcagcgaaac cgtttatcac tcatcataat
     5101 gcgttagatg tggatatgta tctgcgtatt gctccagagc tttacttaaa acgtttagtt
     5161 gtgggtggtt ttgagcgagt atttgagctt aaccgtaact tccgtaacga aggggtttca
     5221 gtacgccaca atcctgaatt tacaatgatt gagtactacc aagcctatgc ggattatcac
     5281 gatttaatgg ataataccga agaactgtta cgccaattag ccttagatat tcttggcaca
     5341 actgacgtac cttatggtga ttatgtattc gatttcggta aaccgtttga gcgtattacg
     5401 atgcacgatg cgattgtgaa atatggtaac ggcattcaac gtgaagattt agacagcttc
     5461 gagaaaagtg tggaaattgc gaaaggctta ggcattgaaa ttcaaaaatc ttggggttta
     5521 ggctcggtag tcaatgcgat ttttgaagaa gtggcagaac atcaattaat tcagccaact
     5581 ttcttgatgg ctcacccggc agaaatttca ccattagctc gccgtaatga tgaaaaccca
     5641 gaggtaactg atcgttttga gttatttatc ggtggtcgtg aaattggtaa tggtttctca
     5701 gaattaaacg atgcagaaga ccaagcagag cgttttgatg ctcaagttgc ggcgaaagat
     5761 gccggtgatg atgaagcaat gtttaaagat gaagacttta tcgtggcatt ggaacacggt
     5821 ctgccgccaa cagcgggtga aggtttagga attgaccgct tagtaatgat tttcgctaac
     5881 gccccatcaa tccgtgatgt aattttattc ccagcgatgc gtcagaagta atcagaaata
     5941 gaacaaaagc acacttcggt gtgctttttt gtattacaag cggtcaaatt tataataaaa
     6001 aatgcaattt attttgctaa tccggcttta atcatcggtt caaaaaagtc ataatcaacc
     6061 aaaaaggcat cgtgtccgaa atcggagtga aactcgtgga actccaaatt tacgcctgcc
     6121 tgttctaatt tttgtttgct cttatacacg tcaacttgct tgaatagttg gtcgcttgtt
     6181 accgctacaa aagtgtagtt ggctttaata cgttttaggg cggtttcttc attttcatag
     6241 ccaagagccg ggtcgtataa atctaatgct cggagtaaac ggaggtaagt gttggcatcg
     6301 aaacgaccta aaaatttcgt gccttgatag cttaaatagg attccacttg gaaatggtcg
     6361 ccccaaattt gtccttgctg tttggtttct cgtccaaagg ctttagcaag ttgaatatca
     6421 gtacggtaag tcagcatacc gagcatacgg gcgattttta agccgttatc aggtgcaatg
     6481 ccatcataat agttcccacc gttaaagtgt ggatcgttaa taatagcttg gcgcataacg
     6541 tggttaaaac cgatagcctc ggcacttagg gtaagtgacg aacaaagatt tataatgttg
     6601 cgaactttat cagggtaact aataccccac tgtgttgctt gcattccgcc gaaagatccc
     6661 cctaccactg cgtgaagttg agggatttct aaatagtcca ataatgcttt ttgtacatta
     6721 acaatatctt gcactgtaat aattggaaac aaactaccgt aaggtttatt ggttttaggg
     6781 ttaatcgaag ctgggccggt tgtgccttta caaccgccta atacattact gcaaataaag
     6841 aaatatttat cggtatcaaa cgcaagccct ttgccgatga aatcttgcca ccagcctttc
     6901 tcggttggtg agtcatagta aggcttagca tcaccggtaa gggcgtggca aagcaagacc
     6961 gcattgcttt tctctgcatt taatctgccg taagtctggt aagccactgt gataggggac
     7021 agttcgcctc ctaatgtgag tggtaaaggt acgtcctcaa aaagggtaat ctgctgagcc
     7081 ataaaaatcc tgtttgcaaa aaattctgct tttttgaccg cttgttgtaa tgaccgttaa
     7141 attagcggtg ttcatttcaa ttgtcaagaa tttttagacg tctaaacgtc tagattttta
     7201 aacggctaaa atcaaaattt tattgctgag aagatattta ttacttaaca aataacatga
     7261 aatagaataa atttattgaa cgattagact attttgtttg tctctaattt acccatctta
     7321 aatagggtag caaaagtaaa ggatctcatt tgaaccaaac gcgtgatagg ttagaaaaat
     7381 tgccactttt ccataaaatg cagcagttta ttattaaggc attgaaaata attgcaattt
     7441 tccccttatt gggaatagct atattattag tggttgattc acttacaagt tatattgtga
     7501 gggataaaat ttatacagat agtaaacaga ttccttaccg ggagtatgca gttgtactcg
     7561 gtacggcaaa attttactct aaagatgtga ttaaccaata ttataaatat cgtttggaag
     7621 ccgctaagca attagtccaa gaaggaaagg tcaatcagct tttgttaagt ggagataata
     7681 aaacgccgta ctataatgag ccaaaaacaa tgacaagtga tctacttaaa atggggattg
     7741 cgacttcaaa aattaagcag gattatgcgg ggtataccac tttttattca ataattaggg
     7801 ctaaaaaagt atataaatta ccgccattta cgattatctc ccaaaaattc cactgtgaaa
     7861 gggcattgtt tattgcaaaa tttagggata ttgatgcaat ttgttatgcc gctacatatc
     7921 cagagggggc ttatcaggta cgaatgcggg aaattttagc cagatcggca atggttttta
     7981 gtttgttgat aggtaaagag cctgaatcat tggaagatat ccgttctaaa tgagatagcc
     8041 ggtcagataa tgttgaccgg ctattttgct tataaaataa tggttttgtt tttatataca
     8101 aatactttgt cagcaagcac taattctaag gcttggctaa gtacggtttt ctcgacatca
     8161 cgtccggcac gcatcatagc ctctgcggtg taggtgtgat caacattaat cacattttgc
     8221 ataataatcg ggccttcatc taattcatca ttcacaaaat gggcggttgc accgataatt
     8281 ttcactccac gttcgtatgc acgatgataa ggttttgcac caatgaaagc gggtaagaac
     8341 gagtggtgaa tattgacaac tcggtttgga taacgagcga caaattccgg attcagcacc
     8401 cgcatatatt tagccaacac aatataatca ggtgaatatt catcaatttt ttccgctaat
     8461 aatttatcgt gttccactcg ggttaaattt tcgtggctga ctaaatggaa tggaatatcg
     8521 aaacgttcaa ctaaactttt taatgtttcg tggtttccaa tcacggcagc aatttctaca
     8581 tctaatccac catagtaatt tttcatcagt aagtcaccta aacaatgtgc ttctttggta
     8641 actaaaataa cgatacgttt tctttgttta gggagtaatt tatagcttga gccttcaggt
     8701 aaggtaaatt ttaaatcagt gagtaaggtt tcatcattaa aaattccgtt taattc
//
LOCUS       DANLVT010000100         8701 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.100, whole genome shotgun sequence.
ACCESSION   DANLVT010000100 DANLVT010000000
VERSION     DANLVT010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8701)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8701)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8701
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.100"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(36..422)
                     /gene="rplQ"
                     /locus_tag="PXC99_001954"
     CDS             complement(36..422)
                     /gene="rplQ"
                     /locus_tag="PXC99_001954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HDL5418386.1"
                     /translation="MRHRKSGRQLNRNSSHRQAMFRNMASALVEHEIIKTTLPKAKEL
                     RRVVEPLITLAKADSVANRRLAFARTRNVDTVAKLFNELGPRFAQRAGGYTRILKCGF
                     RAGDNAPMAYIELVDRPEVATEAAAE"
     gene            complement(458..1447)
                     /gene="rpoA"
                     /locus_tag="PXC99_001955"
     CDS             complement(458..1447)
                     /gene="rpoA"
                     /locus_tag="PXC99_001955"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HDL5418387.1"
                     /translation="MQGSVTEFLKPHLVNIEQVSSTHAKVTLEPLERGFGHTLGNALR
                     RILLSSMPGCAVTEVEIDGVLHEYSSKEGVQEDILEVLLNLKGLAVKVQNKDDIILTL
                     NKSGIGPVTAADITHDGDVEIVNPDHVICHLTDKNASINMRIRVQRGRGYVPASARLH
                     TQNDDRPIGRLLVDARFSPVDRIAYNVEAARVEQRTDLDKLVIEMETNGTLDPEEAIR
                     RAATILAEQLAAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAETIH
                     YIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIAED"
     gene            complement(1478..2104)
                     /gene="rpsD"
                     /locus_tag="PXC99_001956"
     CDS             complement(1478..2104)
                     /gene="rpsD"
                     /locus_tag="PXC99_001956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004410410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HDL5418388.1"
                     /translation="MARYLGPKLKLSRREGTDLFLKSGVRAIESKCRNRLDVAPGQHG
                     ARKPRLSDYGSQLREKQKVRRIYGILERQFRNYYTEANRLKGNTGENLLVLLEGRLDN
                     VVYRMGFAATRAEARQLVSHKSIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKAS
                     LELATQREKPTWLEVDATKMEGVFKRRPERSDLSADINEHLIVELYSK"
     gene            complement(2133..2522)
                     /gene="rpsK"
                     /locus_tag="PXC99_001957"
     CDS             complement(2133..2522)
                     /gene="rpsK"
                     /locus_tag="PXC99_001957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HDL5418389.1"
                     /translation="MAKTPVRARKRVKKQIADGVAHIHASFNNTIVTITDRQGNALAW
                     ATAGGSGFRGSRKSTPFAAQVAAERCAEMVKEFGLKNLEVMVKGPGPGRESTIRALNA
                     AGFRITNITDVTPIPHNGCRPPKKRRV"
     gene            complement(2539..2895)
                     /gene="rpsM"
                     /locus_tag="PXC99_001958"
     CDS             complement(2539..2895)
                     /gene="rpsM"
                     /locus_tag="PXC99_001958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019935869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HDL5418390.1"
                     /translation="MARIAGINIPDQKHTVIALTAIYGIGKTRAKAICAATGIAEDVK
                     IRELSEEQIEKLREEVGKFTVEGDLRREVTLSIKRLLDLGCYRGLRHRRSLPVRGQRT
                     KTNARTRKGPRKPIKK"
     gene            complement(3033..3146)
                     /gene="rpmJ"
                     /locus_tag="PXC99_001959"
     CDS             complement(3033..3146)
                     /gene="rpmJ"
                     /locus_tag="PXC99_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006232360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HDL5418391.1"
                     /translation="MKVRASVKRMCRNCKVIKREGVVRVICSDPKHKQRQG"
     gene            complement(3171..4490)
                     /gene="secY"
                     /locus_tag="PXC99_001960"
     CDS             complement(3171..4490)
                     /gene="secY"
                     /locus_tag="PXC99_001960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HDL5418392.1"
                     /translation="MAKQPGYQGSTQKGTGELKSRLLFVLGALIVFRIGSFIPVPGID
                     ASVLSELIRQQQGTIIDMFNMFSGGALSRASIFALGIMPYISASIIIQLLTAIHPPLA
                     ELKKEGEAGRRKISKYTRYGTLLLAFIQSIGISLALPNMVHGLVPNPSILFYVTSVVS
                     LVTGTMFLMWLGEQITERGIGNGISLIIFTGIVADLPATIGQTIEQARQGELSFIVLL
                     LVAIIAFAVTYFVVFVERGQRRIVVNYASRQQGRMMAPARTSHLPLKVNMAGVIPAIF
                     ASSIILFPASITQWFGQSEGFEWLFNLSQLLQPGQPLYVVLFTMAVIFFAFFYTGMQY
                     NPRDTADNLKKSGAFVPGYRPGEQTSRYIDKVMTRLTLIGALYIAFVCLVPYIITSLW
                     KVPFQLGGTSLLIVVVVIMDFIAQVQSHLMSQQYDSVLKKANLKGLN"
     gene            complement(4493..4927)
                     /gene="rplO"
                     /locus_tag="PXC99_001961"
     CDS             complement(4493..4927)
                     /gene="rplO"
                     /locus_tag="PXC99_001961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011095501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HDL5418393.1"
                     /translation="MRLNSLSPAEGAKHSAKRLGRGIGSGLGKTGGRGHKGQKSRTGG
                     GVRRGFEGGQMPLYRRLPKFGFTSLKSFHVAEIRLNDLAKVDGNEVTLETLKAANIIT
                     KDILSAKVILAGKIERAVVVKGLRVTKGAKAAIEAAGGSIEE"
     gene            complement(4932..5108)
                     /gene="rpmD"
                     /locus_tag="PXC99_001962"
     CDS             complement(4932..5108)
                     /gene="rpmD"
                     /locus_tag="PXC99_001962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012147215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HDL5418394.1"
                     /translation="MAKIKVTQTRSSIARLPKHKATLKGLGLRHIRHTVELEDTPAVR
                     GMINQVSYMVKVEE"
     gene            complement(5115..5615)
                     /gene="rpsE"
                     /locus_tag="PXC99_001963"
     CDS             complement(5115..5615)
                     /gene="rpsE"
                     /locus_tag="PXC99_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004106339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HDL5418395.1"
                     /translation="MSNIEKQAGELQEKLIAVNRVSKTVKGGRIMSFTALTVVGDGNG
                     RVGFGHGKAREVPAAIQKAMEKARRNMINVALNEGTLQHPVKGSHTGSRVFMQPASEG
                     TGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALENMKSPEMVAAKRGKT
                     VEEILG"
     gene            complement(5630..5983)
                     /gene="rplR"
                     /locus_tag="PXC99_001964"
     CDS             complement(5630..5983)
                     /gene="rplR"
                     /locus_tag="PXC99_001964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HDL5418396.1"
                     /translation="MDKKVARIRRASRARHLMREQGATRLVVHRTPRHIYAQVIAPNG
                     SEVLAAASTVEKVIKEQVKYTGNKEAAAVVGKIVAERAIAKGIKAVAFDRSGFKYHGR
                     VQSLADAAREAGLQF"
     gene            complement(5998..6531)
                     /gene="rplF"
                     /locus_tag="PXC99_001965"
     CDS             complement(5998..6531)
                     /gene="rplF"
                     /locus_tag="PXC99_001965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003031129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HDL5418397.1"
                     /translation="MSRVAKAPVNIPAGVEVKLNGQLLTVKGKNGELSREIHNAVEVK
                     QEADALTFAPREGIANADAQAGTARALVNNMVIGVTEGFTKKLQLVGVGYRAQMKGNA
                     VALSLGFSHPVEHTLPAGVTGECPSQTEIILKSADKQLIGQVAADIRAYRKPEPYKGK
                     GVRYSDEVVRTKEAKKK"
     gene            complement(6548..6940)
                     /gene="rpsH"
                     /locus_tag="PXC99_001966"
     CDS             complement(6548..6940)
                     /gene="rpsH"
                     /locus_tag="PXC99_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HDL5418398.1"
                     /translation="MSMQDPIADMLTRIRNGQAANKVAISMPSSKLKVAIANVLAEEG
                     YIESVKVVEGVKPELEITLKYFQNKPVVESIQRVSRPGLRIYKRKDELPKVMGGLGIA
                     VVSTSKGVMTDRAARQAGLGGEIICYVA"
     gene            complement(6977..7282)
                     /gene="rpsN"
                     /locus_tag="PXC99_001967"
     CDS             complement(6977..7282)
                     /gene="rpsN"
                     /locus_tag="PXC99_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HDL5418399.1"
                     /translation="MAKQSMIARDVKRAKLADKFYAKREELKKIISDVNASDEDRWAA
                     VLKLQTLPRDSSPIRQRNRCRQTGRPHGVLRKFGLSRIKVREAAMRGEIPGLKKASW"
     gene            complement(7294..7833)
                     /gene="rplE"
                     /locus_tag="PXC99_001968"
     CDS             complement(7294..7833)
                     /gene="rplE"
                     /locus_tag="PXC99_001968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HDL5418400.1"
                     /translation="MAKLHDYYRDTVVNELKAKFNYSSVMQVPRIEKITLNMGVGEAL
                     TDKKLLDNAVADLAAISGQKPLVTKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFER
                     LITIAVPRIRDFRGLNAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTSA
                     KTDEEGQALLAAFNFPFRK"
     gene            complement(7851..8162)
                     /gene="rplX"
                     /locus_tag="PXC99_001969"
     CDS             complement(7851..8162)
                     /gene="rplX"
                     /locus_tag="PXC99_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000729185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HDL5418401.1"
                     /translation="MAAKIRQNDEVIVLTGKDKGKRGKVTKVLPNGKVFVEGINIITK
                     HEKPVPALGKAGGLVKKEAAIDVSNVAIFNPETNKADRVGFRFEDGKKVRFFKSNEKT
                     I"
     gene            complement(8173..8544)
                     /gene="rplN"
                     /locus_tag="PXC99_001970"
     CDS             complement(8173..8544)
                     /gene="rplN"
                     /locus_tag="PXC99_001970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012728338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HDL5418402.1"
                     /translation="MIQEQTMLDVADNSGARSVMCIKVLGGSHRRYAAIGDIIKVTVK
                     EAIPRGKVKKGDVLKAVVVRTKKGVRRPDGAVIRFDGNACVILNNNTEQPIGTRIFGP
                     VTRELRSEKFMKIISLAPEVL"
BASE COUNT         2502 a         1934 c         1567 g         2698 t
ORIGIN      
        1 ttctaccagg gttttaagct caattttgat taagattatt ccgcagctgc ttcagttgca
       61 acttctgggc gatccactaa ctcaatgtaa gccattggag cattatcacc tgcacggaaa
      121 ccacatttta aaatgcgagt gtaaccaccc gcacgttgtg caaaacgtgg acctaattca
      181 ttgaataatt tagcaactgt atcaacgttg cgtgtacggg caaaagctaa acggcgattt
      241 gcaacgctgt ctgctttagc taaagtaatt aacggctcaa ctacacggcg taactctttc
      301 gcttttggta aagttgtctt gatgatttcg tgttcaacaa gcgcacttgc catattacgg
      361 aacatcgctt ggcgatggct gctgttacgg tttaattgac gtccactctt acgatggcgc
      421 ataacctatt ccttcttaga aaatctatac cgaaaaacta gtcttctgca atacttgcag
      481 gtggccagtt ttcaaggcgc ataccgagtg ataaaccacg agaagcaaga acatccttaa
      541 tctctgtaag agatttttta cccaagttcg gggttttaag aagttcaact tctgtacgtt
      601 gtactaaatc accgatatag tgaattgtct ctgctttcaa acagttagca gaacgaactg
      661 tcagctctag gtcatctact ggacgaagaa gaataggatc aaattccggt ttttcttctt
      721 tcacttcagg ttgacgaaca tcacgcaaat caacgaatgc agcaagttgt tctgctaaaa
      781 tcgttgcagc acgacggata gcttcttcag gatctaacgt tccgttagtt tccatctcaa
      841 taacaagttt atctaagtct gtacgttgtt caacacgagc agcttcgaca ttgtaagcaa
      901 tgcgatctac aggtgaaaaa cgtgcatcta ctaataaacg accgataggg cggtcatcgt
      961 tttgagtatg aagacgtgct gatgcaggaa cataacctcg accacgttga acacgaatgc
     1021 gcatattaat tgatgcattc ttatctgtta aatgacagat tacgtgatca ggattcacaa
     1081 tttctacatc gccatcgtgt gtgatgtcgg ctgcagttac agggccaatt ccagatttat
     1141 ttagtgtcaa aataatatca tctttatttt gcacttttac cgctagacct ttaaggttta
     1201 ataatacctc aagaatatct tcctgaacgc cttctttgct gctgtactca tgcagtacac
     1261 catcaatttc aacttcagta actgcacaac ccggcataga tgaaagtaaa atgcggcgaa
     1321 gtgcgttacc taatgtatgg ccaaaaccac gctctaacgg ctctaatgtc actttagcat
     1381 gagttgaact aacttgttca atatttacta agtgcggctt taaaaattct gtcacagaac
     1441 cctgcatttt ttcctctctt tgcggttaag ctaactatta tttagagtaa agctcaacga
     1501 tcagatgttc attaatatct gctgatagat cagaacgctc tggacgacgt ttaaatacgc
     1561 cttccatttt agttgcatca acttctaacc aagttggttt ttcacgttga gttgctaatt
     1621 ctaatgatgc tttaatacgt gcttgttttt tcgatttttc acgaacagca acaacatcat
     1681 caacagaaac ttggaatgaa ggaatgttta ctacacgacc gtttactacg attgatttat
     1741 ggctaacaag ctgacgtgct tctgcacgtg ttgctgcaaa acccatacga taaactacgt
     1801 tatctaaacg accttccaat aatactagta agttttcacc ggtattacct tttaagcggt
     1861 tcgcttctgt ataataatta cggaattgac gctctaagat accataaata cggcgaactt
     1921 tttgtttttc acgtaattga ctaccatagt cagataaacg tggcttgcga gcaccatgtt
     1981 gaccaggcgc tacatcaagt ctatttctac attttgattc aatcgcacga acgcctgatt
     2041 ttaagaataa atcagtacct tcacgacggc ttagcttgag cttaggaccc aaatatcttg
     2101 ccattttctt tctccaattc ttttaacgtc aattaaacac gacgtttttt cggtggacga
     2161 caaccgttat gtggaatcgg agtcacatca gtaatattcg tgatacggaa acctgctgca
     2221 tttaatgcac ggattgttga ctcacgacct ggacccggtc ctttaaccat aacttccaaa
     2281 ttctttaaac caaactcttt aaccatttct gcacaacgct ctgcagcaac ttgagcagcg
     2341 aatggagtcg atttacgaga accacggaaa cctgaaccac ctgcagttgc ccaagctaga
     2401 gcattacctt gacggtcagt aatagtaacg attgtgttat tgaaagatgc gtggatatga
     2461 gctacgccat ctgcaatctg tttttttacg cgcttacgtg cgcgaactgg tgttttagcc
     2521 attatttatc tactccgact attttttgat cggtttgcgt ggacctttac gggtacgcgc
     2581 attagtctta gtacgttgac cacgtaccgg taaactacga cgatgacgta aaccacggta
     2641 gcaacctaag tctaaaagac gtttgatgct taaagttact tcacgacgta aatccccttc
     2701 gacagtaaat ttaccaactt cttcacgcag tttttcaatc tgctcttcag acaattctct
     2761 gatctttaca tcttcagcaa tacccgttgc agcacagatg gcttttgcac gagttttacc
     2821 gataccgtaa attgcagtta atgcgattac agtgtgtttt tgatcaggaa tgttaatgcc
     2881 tgcaatacgg gccactatgc actcctatta tttaagttta ttgatatact gatcttgaaa
     2941 agcccgtttc aggatactca aacagtatat caggacgaat gagctgagca gtataactgc
     3001 tcagcgggtt ctttgcaaga aatatgcgta aattaacctt gacgttgttt gtgtttagga
     3061 tcgctacaaa ttacacgaac cacaccttca cgtttgatta ctttacaatt acggcacatt
     3121 ctttttactg aagcacgaac tttcattgct tatcctttat taacggccta ttaatttaga
     3181 ccttttaagt tagctttctt caacacagaa tcatattgtt gagacattaa atgactctga
     3241 acctgtgcga tgaaatccat aataacaacc actacaatca ataatgatgt accacctaat
     3301 tggaatggca ccttccataa cgacgtaatg atgtaaggaa ccaaacaaac aaaagcaata
     3361 tataacgcac caattaaggt taaacgtgtc attactttat cgatataacg agatgtttgt
     3421 tcgcctggtc ggtaacctgg tacaaacgca cctgatttct taagattatc cgctgtatca
     3481 cgaggattat actgcattcc tgtataaaag aaagcaaaga aaatcactgc cattgtgaat
     3541 aatacaacat acagtggttg acctggctgt aatagttgtg aaaggttaaa taaccactca
     3601 aatccttcgc tttgaccaaa ccattgagta atgcttgccg ggaataaaat aatacttgaa
     3661 gcaaaaattg ccggtattac ccctgccata ttcactttta atggtaagtg agaagttctt
     3721 gcaggcgcca tcattcgacc ttgttggcga cttgcatagt ttacaactat tcttctttgt
     3781 ccacgttcaa caaaaacaac aaaataagtt actgcaaatg caattattgc aactagtagt
     3841 aagacgataa atgataactc gccttgacgg gcttgttcta ttgtctgccc tatcgttgct
     3901 ggaagatctg caacaatacc tgtaaaaata atcaatgaga taccgtttcc gataccacgc
     3961 tcagtgattt gttcgcctag ccacattagg aacattgttc ctgtcactaa gcttactaca
     4021 gaggttacat agaataatat acttggatta ggaactaatc catgtaccat attcggtagg
     4081 gctagtgaaa taccaataga ttgaataaat gctaataaca gtgtgccata gcgtgtatat
     4141 ttactgattt tccgacgacc tgcttcacct tctttcttta attcagctag aggtgggtga
     4201 atcgctgtca ataattggat aataattgac gctgaaatat aaggcataat acctagtgca
     4261 aatatagatg cacggcttaa agcaccacca gagaacatat taaacatatc aatgatggtg
     4321 ccttgctgtt gtcgaattaa ttcggataat acagaagcat caatgccagg aacaggtata
     4381 aaagaaccga tacggaaaac gattaacgca cctaaaacaa acaatagtct tgatttaagc
     4441 tcgccagtcc ctttttgtgt actaccttgg taccctggtt gctttgccat ctttattcct
     4501 cgatagaacc gccagcagct tcaatagcag ctttagcgcc tttagttaca cgtaagcctt
     4561 taacaactac tgctctttca attttgcctg ctaaaattac tttagcagat aaaatatctt
     4621 tagtaatgat gtttgctgct tttaatgtct ctaaagttac ttcgttgcca tctactttag
     4681 ctaagtcgtt taaacgaatt tcagccacat ggaatgattt taatgaagta aaaccaaatt
     4741 ttggcaaacg acgatataaa ggcatttgac caccctcgaa accacgacga acaccgccgc
     4801 ctgtacgaga tttttgacct ttatgaccgc gcccaccagt tttacctaaa ccagaaccaa
     4861 taccacgacc tagacgtttt gcactgtgct tagcaccttc agctggagaa agagaattta
     4921 aacgcattct attactcctc tactttaacc atataagaca cttgattgat cataccacgc
     4981 actgctggtg tatcttcaag ttctacagta tgacgaatat gacgaagacc taagcctttt
     5041 aacgttgctt tatgtttcgg taaacgagcg atagagctac gagtttgagt tactttaatt
     5101 tttgccatat ccaattaccc caaaatttct tcaactgttt tgccacgttt tgcagcaacc
     5161 atttcaggtg atttcatgtt ctcaagtgca tcgattgttg cacgaacaac gttaattggg
     5221 ttagttgaac catacgcttt agaaagaacg ttacgaacac ccgcaacttc taatactgca
     5281 cgcattgcac caccagcgat gatacctgta ccttcacttg ctggttgcat aaatacgcgt
     5341 gaacctgtat gtgaaccttt aactggatgt tgtaatgtac cttcatttaa agctacatta
     5401 atcatattgc gacgagcttt ttccatcgct ttttggattg ctgctggaac ttcacgtgct
     5461 ttaccgtgac caaaacctac acgaccgtta ccatcgccca ctactgttaa agcagtgaaa
     5521 ctcataatac gaccaccttt tacggttttt gaaacacggt taaccgcgat tagcttttcc
     5581 tgcagttcac cagcttgttt ttcgatgttt gacatctcaa attcctctat tagaactgta
     5641 gaccagcttc acgagcagca tctgctaatg attgcacacg accgtggtat ttaaaaccag
     5701 aacggtcaaa agcaaccgct ttaatacctt tggcaattgc acgctcagca acgattttac
     5761 ccactactgc tgcggcttct ttattgccgg tatatttaac ttgctcttta attacttttt
     5821 caacagttga agctgctgct agtacttctg agccattagg tgcaatcacc tgcgcataga
     5881 tatggcgagg tgtgcgatgc acaactaaac gtgttgcacc ttgctctctc attaaatgac
     5941 gtgcacggct tgcacgacgg atacgagcta ctttcttatc catagtgtta ccttacttta
     6001 ctttttcttc gcttcttttg tacgcactac ttcatcagag taacgtacac ctttaccttt
     6061 ataaggttca ggtttgcgat atgcacgaat atctgctgcc acttgaccaa ttaactgttt
     6121 gtcagcactt ttcagaataa tttctgtttg tgatggacat tcaccagtta cgcctgctgg
     6181 caacgtgtgt tctactgggt gagagaaacc taaacttaaa gcaacagcat tgcctttcat
     6241 ttgtgctcta taaccaacac ccactaattg caatttctta gtaaagcctt cagtaacccc
     6301 gattaccata ttatttacta gtgcacgagc agtacctgct tgagcatctg cattagcgat
     6361 accttcacgt ggagcgaaag ttaatgcatc tgcttcttgt tttacttcaa ctgcattgtg
     6421 aatttcacga gataactcgc cgtttttacc tttaactgtt aatagctgac cgttaagttt
     6481 tacctcaaca ccggcaggaa tattaacagg tgcttttgca acacgagaca tttttcctac
     6541 ctctctatta tgctacgtaa cagataattt caccgccgag gcccgcttga cgcgcagcac
     6601 ggtcggtcat tacaccttta gatgtagaaa caactgcgat acctaaacca cccattactt
     6661 ttggtaattc gtctttgcgt ttataaatac gcagacccgg acggctcaca cgttggatac
     6721 tttctacaac cggtttgttt tggaaatatt ttaaagtaat ttccagttca ggtttaacac
     6781 cttcaacaac tttaacgctt tcgatataac cttcttcagc taaaacattt gcaatagcaa
     6841 cttttaactt agatgaaggc atactgattg caactttgtt cgcagcttga ccgttacgaa
     6901 tacgggtcag catatctgcg attggatctt gcatgctcat gtatttactc ccatgattcc
     6961 aaattaaaag aggttattac cagcttgcct tcttaagacc cggaatttca ccgcgcatag
     7021 cagcttcacg aaccttaata cggcttaaac caaacttacg aagtacgcca tgtggacgac
     7081 cagtttggcg gcaacgatta cgctgacgga ttgggctaga atcacgagga agtgtttgta
     7141 attttaacac tgctgcccaa cggtcttcat cagatgcatt cacatcagag atgattttct
     7201 ttaattcttc acgttttgcg tagaatttat cagctaattt agcacgtttt acatcgcgtg
     7261 cgatcattga ttgttttgcc acgataacct accttattta cggaatggga aattgaaagc
     7321 agctaataaa gcttgacctt cttcatcagt tttcgctgag gtggtgatag taatatctaa
     7381 accacgaaca cgatctactt tatcgtagtc gatttcaggg aaaatgattt gttcacgaac
     7441 acccatactg taattaccac gaccatcgaa tgacttagcg tttaaaccgc ggaagtcacg
     7501 aatacgtgga acagcgatag taatcaatct ttcaaagaat tcccacatac gttcaccacg
     7561 tagggttact ttgcaaccga ttggataccc ttgacggatt ttaaagcctg caacagattt
     7621 gcgagcttta gttactaaag gtttttgacc gctgattgct gctaaatccg ctactgcgtt
     7681 atctaacagt tttttgtcgg tcaatgcttc acccacaccc atgttaaggg taatcttttc
     7741 gattcgtggg acttgcatga cagatgagta gttgaatttt gcttttaatt cattaactac
     7801 tgtatctctg tagtaatcat gcagtttcgc catcacatta ctccagttaa ttaaattgtt
     7861 ttctcgttag atttgaagaa acgcactttt ttgccatctt cgaatctaaa tcctacacgg
     7921 tcagctttgt tggtttcagg gttgaagatc gcaacgtttg aaacatcgat tgcagcttct
     7981 ttcttcacta aaccaccagc tttgcctaat gcaggaactg gtttttcgtg tttagtgatg
     8041 atgttgatac cctcaacaaa aactttacca tttggtaaca ctttagttac cttaccacgt
     8101 ttgcccttat ctttaccggt aagaacaatt acttcatcgt tttgacggat ttttgcagcc
     8161 attacattct ccttatagta cttctggagc taaagagatg attttcataa acttctcaga
     8221 acgaagttca cgagtcaccg gtccaaaaat acgagtaccg attggttgct cagtgttatt
     8281 gtttaaaatt acacaagcat tgccatcgaa acgaataact gcgccatctg ggcgacgaac
     8341 acccttcttg gtgcgcacaa caactgcttt taacacatca ccttttttca ctttaccgcg
     8401 tggaattgct tcttttacag taactttaat gatatcgcca atagcagcgt aacgacggtg
     8461 cgatccacct agaaccttga tacacattac gctacgagcc cctgagttat cagcaacatc
     8521 cagcatagtc tgttcttgga tcatattagt gctccgttaa aataaaaaaa caccctttcg
     8581 ggacgaacct atttatacaa atataaatag ggtgcaaaat atactacaaa aaccactagt
     8641 taatcaagtg aatttttaag ctaatttaat agtttaagta agcttattta taaattgttt
     8701 c
//
LOCUS       DANLVT010000101         8529 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.101, whole genome shotgun sequence.
ACCESSION   DANLVT010000101 DANLVT010000000
VERSION     DANLVT010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8529)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8529)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8529
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.101"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            26..1831
                     /locus_tag="PXC99_001971"
     CDS             26..1831
                     /locus_tag="PXC99_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4153 domain-containing protein"
                     /protein_id="HDL5418403.1"
                     /translation="MLSKLQRFTLMIKSTIIKHPLEILFVTYVTILLINNVSDYELIK
                     RFQNLIALFPICFILLYLIRDTKAYWLFAPIPIAIVFFFGQINLTLLEDSRYWATIFC
                     VFLCLISQYWYKNNHYFVAGTTNKLVNIVFATVLSGIIFATLSAITIAIIALFDLNKQ
                     NNFHIFEKFGIFSSFWAFPVLFLTLEQQTTNDSRYLNRISEMLLNWILSPALIIYTAI
                     IYAYVIFIAAKGQMPDGVVANVALPYLAFGLAIQAVQLLLKNAKWQWFYSHFTYLALL
                     PLTLIWYAIYIRFSHYGLTEARIYLVIGTITLSICYTLLLFKQLAQYRLFSAVSIAII
                     LISVFILDPKTVALKDQTKRLDNYLLKHKLLDVNNKISTKAVLKYQESLNENRDEAEY
                     FYSMLHYVARGMPAAQFKEKYGVNSSYDLMSEIRERNTDPRYFEATNSELVRLTKADM
                     ANAREYITFSSQLYRPNSFSHQKIENKLCQKRLSQGYYFEGNILNIEYQYSETAQDCS
                     SITQDPTEFVIYFKGLGTTIEFNINDILKKIFAKHQLSITQQHKNEVLEKIKGDLLKM
                     DLGNSVLGLKHIELRFEDNIGYIVESISTQYIMLK"
     gene            complement(1874..4903)
                     /locus_tag="PXC99_001972"
     CDS             complement(1874..4903)
                     /locus_tag="PXC99_001972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4981 domain-containing protein"
                     /protein_id="HDL5418404.1"
                     /translation="MSLPNYYQDPSVLHLNTTLHHAYFIPFAKGQTPNQLEREQSELF
                     TLLNGDWKFNFYPSPHDLPEDFLNTKFTHQIPVPSNWQTQGFDAHQYTNINYPIPFDP
                     PYVPHQNPCGVYQREITFNPKPNKRYLLNFEGVDSCLFVYVNGEFVGYGQISHSTNEF
                     DITKQLKQGKNSLVVVVLKWCDGSYLEDQDKFRMSGIFRDVYILEREQNYLQDFFIRY
                     QLNADLSKAELKVETQFSTYTEAVHFQLFDPENRLVCEQTSGDFCQEICNLCLWNAED
                     PTLYTLCLSYQNEIIEQKIGFRQIRVENGVMLFNNAPIKFKGVNRHDSDPKTGYSISR
                     EQALVDLRLMKAHNINAIRTAHYPNAPWFSELCDQLGFYLIAESDLESHGSSAVYIES
                     PENSIFLNVPNPNKQEEIRQQAVDNFCYFARDPLFKQAILDRNIANVERDKNRTSVII
                     WSLGNESGFGENFEVAARWVKQRDPSRLTHYEGSIYQHSAHQNDLSNLDLYSEMYPST
                     ERLEEYFSDSANHKPFILCEYSHAMGNSSGDMEDYWQTFQRYSGACGGFVWEWCDHAP
                     LLPNSELSAEQKTEKYGYGGDFGETLHDGNFCMDGLVSQQRVPHSNLLEVKNVNRPVR
                     AELKAGKIWLKNQLDFSDLADYLTVHYCFSENGETTLQGQCLVNCQPNQTACLPLTLP
                     EPNGKLQLLTLDYSLNESTALLEKGHHLGFDQITLHQAMVTPALNPRPQAVIFVQDFA
                     NEWRIQQGDYRYTFDKLKGIFSRIEKNGEAVIEQPLDFNIWRAPTDNDRLIREFWKKA
                     GYDNCYTRAYHTELMQDKNGVNITAECGIVATAQSRILTLKVNYHLAPNGEMTIQVQA
                     TRPAHLPFLPRFGLRFFLNKRNNQVSYFGYGEQESYIDKYHLAKLGAYQTSARENHTD
                     YLKPQENGSHFGTHYVQANGITVTSPQPFSFNLSPYTQEELTTKSHSYDLVESPSTVL
                     CVDYKMSGIGSNSCGPNLKPQYRLNETNFEWLLKLSF"
     gene            5081..5938
                     /gene="menB"
                     /locus_tag="PXC99_001973"
     CDS             5081..5938
                     /gene="menB"
                     /locus_tag="PXC99_001973"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005723289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HDL5418405.1"
                     /translation="MLYPSEEFLYAPVEWVDHSEGYTDIRYHKSKDGIAKITINRPEV
                     RNAFRPQTVKEMIEAFSDARFDEKIGVIVLTGEGEYAFCAGGDQKVRGDYGGYKDESG
                     VHHLNVLDFQRDIRTCPKPVVAMVAGYAIGGGHVLHMLCDLTIAADNAKFGQTGPKVG
                     SFDGGWGASYMARLVGQKKAREIWFLCRQYNAQEALDMGLINTVVPYADLEKETVRWC
                     REMLQNSPIALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNEKREP
                     DFSKFRRNP"
     gene            6021..8423
                     /gene="mrcB"
                     /locus_tag="PXC99_001974"
     CDS             6021..8423
                     /gene="mrcB"
                     /locus_tag="PXC99_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1B"
                     /protein_id="HDL5418406.1"
                     /translation="MSDVELNEQSEQEPEQKPKKRNYFLSTLFKIGVIGACSMAFYGI
                     YLDGKIRSKMDGQIWELPAEVYARIESIKIEDNLTLEQTKQALLDNGYRQVSQVATPG
                     DFKIEENQLVLLRRAFPFPETPESQRVLRLTFKQDKLTYIEDLVQGKLIEEFRLDPKL
                     LALLHSDSDEERQALRLQQYPRLLIESLILTEDRRFYQHDGISPIGIARALITNYQAG
                     RTVQGGSTLTQQLVKNLFLSNERSLVRKVNEALMSVILDFRYDKNRILETYLNEIYLG
                     QNGSYQIHGFALASQFYFGRPIQEISLDQIALLVGMVKGPSLYNPWRNPQGAVERRNV
                     VLRLLLDHQVINQELYALLSSRPLNIREKGTIYREQPAFMQALTIDLKNELGEIKSAQ
                     LSGTKIFTTLDRKQQRSAEQAVITGLEDLESKNKKVSDLQSAIVVAEYRTGKVRAIVG
                     DRLTQFAGFNRAIQSKRQIGSLVKPSVYAIALAQPELFRLNTPIQNKQISIKVGSTYW
                     TPRNYDRSFSGSVMLMDALVRSLNIPTVNIGMKVGLKKVIAKQKEMGWDNAEIPPYPS
                     TLLGSYSISPYDVTRSYQVIANEGLKTPLTTIEAIISHNGEMFYQRDSGKVSEQVLPP
                     EAAVQTMYAMQQVVERGTARSLQNDFAKLKLAGKTGTTNNARDTWFVGIDGEHVTTVW
                     LGKDNNGDTNLTGSSGALYVYKQYLERALPQAYRLPKLNTMQWVGINSYGSWNCDSGR
                     QIPVWRDKGQRYCTSAGNVVATEKPSVWDALSLKKENIEAKAEEAEGKQPIPTEEVAP
                     IE"
BASE COUNT         2516 a         1698 c         1834 g         2481 t
ORIGIN      
        1 tcttttcata ggcaggagat ctattatgct aagtaagcta caacgcttta ccttaatgat
       61 aaaaagcacc atcattaagc atccactgga aattttattc gttacttacg tcacgatttt
      121 acttatcaat aatgtgagcg actacgaatt aatcaaacgc tttcaaaatc taattgctct
      181 ttttcctatt tgctttattt tgctttacct gatacgcgat accaaagctt attggctatt
      241 cgctccgatt ccgatagcaa tcgtcttttt ctttggtcaa attaatttaa cattattgga
      301 agattctcgt tattgggcta ccatattttg tgtattcctt tgtttgatca gtcaatattg
      361 gtacaaaaac aaccattatt ttgtagccgg aacaactaat aaattagtta acattgtctt
      421 tgctacagtt ttatctggca ttatttttgc aacattaagc gctattacca tagccattat
      481 tgctttattt gatttaaata aacaaaacaa ctttcatatt tttgaaaaat ttggcatttt
      541 ttctagtttt tgggcattcc ctgttttatt tttaactctt gaacaacaga ctaccaatga
      601 ttctagatat ctaaaccgca ttagtgaaat gttactaaac tggattttgt ctccggcatt
      661 aattatctat actgcaatta tttatgctta tgtaattttt attgcggcta aggggcaaat
      721 gccagatggg gttgttgcaa acgtagcgct tccctattta gctttcggcc tagctataca
      781 agcggtgcaa ttattactaa aaaatgcaaa atggcagtgg ttttattctc actttaccta
      841 tttagcactt ttgccgttaa cattaatttg gtatgccatc tatattcgtt tcagccatta
      901 tggcttaact gaagcccgta tttatttagt gattggcaca ataaccttat ctatttgcta
      961 taccttatta ctatttaaac agttggcgca atatcgtctc ttttctgcag tgtcgatagc
     1021 aattatttta atttcagtgt ttattttaga tccgaaaaca gttgcgctta aagatcaaac
     1081 caagcggttg gacaactatt tgctaaaaca caaattatta gatgtaaata acaaaatcag
     1141 cacaaaagct gtacttaaat accaagaatc attaaatgaa aaccgagatg aagccgaata
     1201 tttttattca atgctccact atgttgccag aggaatgcct gctgcacaat ttaaagagaa
     1261 atatggcgta aattcaagct acgatttaat gagtgaaata agagaaagaa atactgaccc
     1321 acgttatttt gaagctacta attctgagct ggttcgctta actaaagcag atatggcaaa
     1381 tgctcgtgaa tatattacat ttagtagcca attatatcgg cctaattcat tttcccatca
     1441 aaaaatagaa aataagctat gccaaaaacg cctttctcaa ggttactatt ttgagggaaa
     1501 tatattaaat attgagtatc aatactcaga aacggctcaa gactgctctt caataacaca
     1561 agatcctact gaatttgtta tctactttaa aggacttggg actactattg aatttaacat
     1621 taacgatatt ttgaaaaaaa tctttgctaa acatcagtta tctattaccc agcaacacaa
     1681 aaatgaggtt ttagaaaaga ttaaaggcga tttactcaaa atggatttag gaaattcagt
     1741 acttgggctt aagcatattg agttaagatt tgaagacaat atcggctata tagtagaaag
     1801 tattagtaca caatatatta tgctgaaata aaaggagatg ctcgttcaat taaatttgaa
     1861 cgagcatttt tcgttaaaaa ctcaatttaa gcagccactc aaaattagtc tcatttaacc
     1921 gatattgcgg tttcaaattc gggccgcaag agtttgagcc aatgccgctc attttgtaat
     1981 cgacacacag cacggtggaa gggctttcta ccaaatcata actgtggctt ttagtggtta
     2041 gctcttcctg tgtgtaaggc gaaagattaa aactaaacgg ctgtggagaa gtaacagtta
     2101 tcccatttgc ttgcacataa tgcgtaccga aatggctgcc gttttcctgc ggtttgagat
     2161 aatcggtatg attttctcgg gcgctggttt gataagctcc gagtttcgcc aaatggtatt
     2221 tgtcgatata actctcctgc tcgccatagc caaaatagct cacttggtta ttccgtttat
     2281 tcaagaaaaa ccgcaagcca aagcgaggta aaaacggcaa atgagcgggg cgggttgcct
     2341 gaacctgaat cgtcatttcg ccattcgggg caagatgata attcactttc agggttaaaa
     2401 tccgactttg agcggttgcc acaatgccac attcggcagt aatgtttacg ccgtttttat
     2461 cttgcatcag ttcggtatga tacgccctgg tgtaacagtt atcgtagccg gcttttttcc
     2521 aaaactcacg aattaagcgg tcgttatcgg ttggggctcg ccaaatattg aaatccaacg
     2581 gttgctcaat tactgcctcg ccgtttttct caatccggct gaaaatgcct ttgagtttat
     2641 cgaaagtgta gcgatagtcg ccctgttgaa tccgccattc atttgcaaaa tcttgcacaa
     2701 aaatgaccgc ttgcgggcgt ggattaagtg ctggagtgac catcgcttga tgcagcgtga
     2761 tttggtcaaa gcctaagtga tgcccttttt ccaacagagc cgtgctttca tttaaagaat
     2821 aatcaagggt taaaagttgc aatttgccgt ttggttcggg cagcgttagc ggcaaacaag
     2881 cggtctgatt tggctgacaa tttaccaaac attgtccctg cagggtggtt tcgccgtttt
     2941 cgctgaaaca gtaatgcacg gtcagataat cagctaagtc gctgaaatcc aactgatttt
     3001 tcagccaaat tttgcccgct tttaactcag ctcgcaccgg gcgattcaca tttttcactt
     3061 ctaacaaatt agagtgtggc acacgctgtt gggaaaccaa gccgtccata cagaaattgc
     3121 catcgtgcaa ggtttcgccg aaatcaccgc catagccgta tttttcggtc ttctgttcgg
     3181 cacttagctc agagttgggg agcagaggag catggtcgca ccattcccac acaaagccac
     3241 cgcacgcacc gctgtagcgt tggaaggttt gccaataatc ttccatatca ccactcgaat
     3301 tgcccatcgc gtgagaatat tcacacaaaa taaaaggttt gtggttggca gagtcggaaa
     3361 aatattcctc taaccgctcg gtgcttgggt acatctcgct gtataaatcg aggtttgaaa
     3421 gatcgttttg atgtgccgaa tgttggtaaa tcgaaccttc gtagtgagtt aaacggcttg
     3481 gatcccgttg ttttacccaa cgggctgcga cttcaaaatt ttcaccaaag ccggattcgt
     3541 taccaagtga ccaaataatg accgaagtgc ggtttttgtc tcgctccaca ttggcaatgt
     3601 tgcgatctaa aatcgcctgt ttgaacagcg gatctcttgc aaaataacag aaattatcga
     3661 ccgcttgttg gcgaatttct tcctgtttgt tcgggtttgg cacattcagg aaaatgctgt
     3721 tttccggact ttcaatatac actgcactgg agccgtgaga ttcaagatca ctttcggcaa
     3781 tcagataaaa accgagctga tcgcacaatt cactaaacca cggagcgttc gggtaatggg
     3841 cggtgcgaat agcgttgatg ttatgggctt tcattaagcg taaatccacc aacgcttgct
     3901 cacggctaat gctgtagccg gttttcgggt cggaatcgtg gcggtttacc cctttaaatt
     3961 taatcggggc gttgttgaat agcatcacgc cattttccac acgaatctga cgaaagccga
     4021 ttttttgctc aataatttcg ttttggtagc tcaagcatag cgtgtagagt gtcggatctt
     4081 ccgcattcca caaacacaaa ttgcaaattt cttggcaaaa atcaccgctt gtttgctcgc
     4141 agactaagcg gttttcaggg tcgaaaagtt gaaaatgcac agcttcggtg taggtggaaa
     4201 attgtgtttc caccttgagt tctgcctttg aaagatcagc gtttaactgg tagcggataa
     4261 agaaatcttg caggtagttt tgctcacgtt ccaaaatata aacatcacgg aaaatgcctg
     4321 acattcggaa tttgtcttga tcttccaaat aactgccgtc acaccatttt agcaccacca
     4381 cgacgaggct gtttttgccc tgtttaagct gtttggtgat gtcaaattca ttggtgctgt
     4441 ggctgatttg cccgtagccg acaaattcgc cgtttacata aacaaacagg cacgaatcta
     4501 cgccctcaaa atttagcaaa tagcgtttgt taggcttggg gttaaacgtg atttcacgct
     4561 gatacacccc gcaagggttt tggtgtggca cataaggcgg atcaaacgga atcgggtagt
     4621 tgatgttagt gtattgatgg gcatcaaagc cttgagtttg ccagttagac ggcacgggga
     4681 tttggtgggt aaatttggtg ttgaggaaat cctccggcag atcgtgcgga cttggataga
     4741 aattaaactt ccaatcgcca tttagcaaag taaataactc agattgttcc cgttccaact
     4801 gattcggcgt ttgcccttta gcaaaaggaa taaaataagc gtggtgtagc gtggtattaa
     4861 ggtgcaacac actcgggtct tggtagtaat tcggtaacga cataaaagcc ctatgatcaa
     4921 aaagatataa atacgaatac actttaattc tcttataaaa tagggcaatc aactatgtga
     4981 aaaattgtga ggcggatcac aaaataattt cctcaccttt ttccttcgat tccgttataa
     5041 tcacaagaat tttttatgtc atttttcaag gaatttacca atgttatatc caagcgaaga
     5101 atttttatat gcaccggttg agtgggttga tcacagcgaa ggttacaccg atattcgtta
     5161 ccataaatca aaagacggta tcgctaaaat caccattaat cgtccggaag tgcgtaatgc
     5221 tttccgtccg caaacggtaa aagagatgat tgaagccttt tctgatgccc gttttgatga
     5281 aaaaatcggc gtcatcgtat taaccggtga aggcgaatat gcgttctgtg ccggcggcga
     5341 ccaaaaagtg cgtggcgatt acggcggcta caaagatgaa agcggtgtgc atcacttaaa
     5401 tgtgttggat ttccaacgtg atattcgtac ctgcccgaaa ccggtggtgg caatggttgc
     5461 cggctatgcg attggtggtg gacacgtttt acatatgtta tgtgatttaa ccattgccgc
     5521 tgacaatgca aaattcggtc aaaccggccc gaaagtgggg tcatttgacg gcggttgggg
     5581 tgcaagctat atggcacgtt tagtcggtca gaaaaaagcg cgtgaaattt ggttcttatg
     5641 ccgtcaatat aatgcacaag aagcgttaga tatgggctta atcaataccg ttgtgcctta
     5701 tgctgattta gaaaaagaga ctgtgcgttg gtgtcgcgaa atgctacaaa acagcccgat
     5761 tgccttacgt tgcttaaaag cagcattgaa tgcagattgt gacggtcagg ctggcctgca
     5821 agagcttgct ggtaatgcaa caatgttgtt ctatatgaca gaagaagggc aagaaggacg
     5881 caatgcgttc aacgagaaac gtgagccgga cttcagcaaa ttccgccgca atccataatt
     5941 gacggcaaat acaagcggtt cgattttgca aaaaatttgc aaaaatcgac cgcttacctt
     6001 ttctaattta agttaatttt atgtcagatg ttgagttaaa cgagcagagc gagcaagagc
     6061 ctgagcaaaa accgaaaaag cgaaactatt tcctttcaac cttattcaaa atcggggtga
     6121 taggagcttg cagtatggct ttttacggca tttatttaga cggtaaaatc cgtagcaaaa
     6181 tggatgggca gatatgggaa ttaccagctg aggtgtatgc tcgtattgaa agcattaaaa
     6241 ttgaagacaa cttaacgctt gagcaaacca aacaagcgtt gctggataac ggctatcgtc
     6301 aagtttctca agttgcgaca ccaggcgatt tcaaaattga agaaaatcag ctggtgttgc
     6361 tacgccgagc tttcccgttt ccagaaacac cggaatcgca acgagtgctt cgtttaactt
     6421 tcaaacaaga taaattaact tatattgaag atttggtgca gggtaagttg atcgaggagt
     6481 tccgcttgga tccgaaatta ctggcgttac tgcattccga tagcgatgaa gaacgtcaag
     6541 cattacgctt acaacaatac cctcgcttgt taattgagtc actgatttta accgaagatc
     6601 gccgctttta tcagcacgat gggattagcc caatcggtat tgcccgtgct ttaatcacta
     6661 actaccaagc tggcagaaca gtgcagggtg gcagtacctt aacgcaacag ttagtgaaaa
     6721 acttgttctt aagtaatgaa agatcgttgg tgcgtaaggt aaatgaagcg ttaatgtcgg
     6781 tgattttaga cttccgttac gataaaaacc gcattttaga aacctatctc aacgaaattt
     6841 atttagggca gaacggtagc taccaaattc acggttttgc attggcaagc caattctatt
     6901 ttggtcgtcc gatccaagag attagcttag accaaattgc gttattggtg ggaatggtaa
     6961 aaggtccatc actgtataac ccgtggcgaa atccgcaagg tgcggtagag cgacgtaatg
     7021 tggtgttgcg attattgctg gatcatcaag tgatcaatca agaactttac gctctgttaa
     7081 gctcccgccc gcttaatatt cgtgaaaaag gcacgattta ccgtgagcaa cctgccttta
     7141 tgcaggcatt aaccattgat ttgaaaaatg agttaggcga aattaagtca gctcaacttt
     7201 ccggtactaa aatttttacg acccttgacc gtaaacagca acgttcagcc gaacaagcag
     7261 tgattaccgg tttggaagat ctggaaagta aaaataaaaa agtcagcgat ttgcaatcgg
     7321 ctattgtcgt ggcggaatac cgcacaggta aagtgagggc gatagtagga gaccgcttaa
     7381 cccaatttgc cggctttaac cgtgcgattc agtcaaaacg ccaaatcggt tctttagtca
     7441 aaccatcggt ttatgcgatt gccttggcac agcctgaatt attccgttta aatacaccga
     7501 tccaaaataa acaaatttca attaaggttg gttcaaccta ctggacaccc cgtaactacg
     7561 accgcagttt tagtggctcg gtgatgttaa tggacgcctt agtccgctct ctgaatattc
     7621 caacggtgaa tattggtatg aaagttggct taaaaaaagt cattgccaaa caaaaagaga
     7681 tgggctggga taatgcggaa attccgcctt acccatcaac cttgctaggt tcatattcga
     7741 tctcgcctta cgatgtaacc cgctcttatc aagtaattgc caacgaaggg ctgaaaacac
     7801 cattaaccac cattgaggcg attatttcgc acaatggcga aatgttctat cagcgagata
     7861 gcggcaaagt gagcgagcag gtgcttccac cggaagctgc ggttcaaaca atgtatgcga
     7921 tgcaacaggt tgtggaacga ggtacggctc gtagcttaca aaacgatttt gccaaactga
     7981 aattagccgg caaaaccggt acaaccaata acgctcgaga tacttggttt gtgggaattg
     8041 atggcgaaca cgtcacaacc gtctggctgg gtaaagataa caatggggat accaacctca
     8101 ccggttcaag tggtgcattg tatgtgtata agcaatatct tgagagagcc ttgcctcagg
     8161 cgtatagatt accgaaactt aatacgatgc aatgggtggg gattaatagc tatggtagct
     8221 ggaattgcga tagtggcaga caaattccag tttggcgaga taaagggcaa cgttattgta
     8281 ccagtgcagg taatgtagtg gctacagaaa aaccaagtgt ttgggatgca ctttcgctga
     8341 aaaaagaaaa tatcgaggct aaagcagaag aagctgaagg gaagcaacca atccctactg
     8401 aagaagttgc accaattgaa taaaaataaa tttgatagcc attatcattc aagatacaca
     8461 agctgataga ttctacctat aaaaagtata tattataact atttgctagt tttcattttg
     8521 gattgtaat
//
LOCUS       DANLVT010000102         8289 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.102, whole genome shotgun sequence.
ACCESSION   DANLVT010000102 DANLVT010000000
VERSION     DANLVT010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8289)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8289)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8289
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.102"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            158..1480
                     /locus_tag="PXC99_001975"
     CDS             158..1480
                     /locus_tag="PXC99_001975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL5418407.1"
                     /translation="MSAMFIIQFAIVLLCILVGARVGGIGLGVFGGLGLAILSFGFGL
                     KPAGLPIDVMFMIMAVVSAAAAMQAAGGLDYMIKIATRILRKNPKYITFIAPLVTWTF
                     TVLAGTGHVAYSVLPVIAEVSRHNGIRPERPLSMAVIASQFAIVASPIAAAVVAVVAF
                     LEPQGVTLGNVLSVTIPATLLGLGLACVFVNKMGKELKDDPNYQRLLQDPEYVKENHI
                     TTNPTELPLKPTAKLSVGLFLFGALLVVLMGAIPALRPVFDGKPMGMAHTIEIVMLSI
                     GALIIFFCKPDGNEITKGSVFHAGMRAVIAIFGIAWLGDTLMQGHMDEVKSMVSGLVE
                     TAPWAFAFALFVLSVLVNSQGATVATLFPVAIAIGIPAPVLIGVFVAVNGYFFIPNYG
                     PIIASIDFDTTGTTRIGKYIFNHSFMLPGLLSMIFSIGFGLLLSNILL"
     gene            complement(1528..1887)
                     /locus_tag="PXC99_001976"
     CDS             complement(1528..1887)
                     /locus_tag="PXC99_001976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CrcB family protein"
                     /protein_id="HDL5418408.1"
                     /translation="MISIGAVLGAMCRWQLAVWLNPILSQFAFGTLAANWLGCLLIGI
                     AMGFNLGESQRLLFISGFLGSFTTFSSFSLELTEKLLAEKWGQFVTVLSLHLIGGLLL
                     TLIGVMLARAVTSGRFC"
     gene            2100..2885
                     /locus_tag="PXC99_001977"
     CDS             2100..2885
                     /locus_tag="PXC99_001977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HDL5418409.1"
                     /translation="MSKSLRNACIGEFIGTGFILFFGAGCVAAAQVAGANFGLWEISI
                     VWGLGVSMAIYISAGISGAHLNPAVTIALAAFYGFEKHKILPYVIAQVAGAFCSVALI
                     YFMYSDLFTAAEAAQGITRGETVGFAGVFSTYPNPNITLVTAFIVEFVITVVLMSTIL
                     AIGDDKNGLPNKALAALLIGLLIAVIGGATGPLTGFAMNPARDFGPKLFAYLAGWGEI
                     ALTGGKEIPYFIIPIVAPICGALFGAWGYKNLIHNNLPANTQE"
     gene            2889..4400
                     /gene="glpK"
                     /locus_tag="PXC99_001978"
     CDS             2889..4400
                     /gene="glpK"
                     /locus_tag="PXC99_001978"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HDL5418410.1"
                     /translation="MEKQYIIALDQGTTSSRAVLLDKNANVVEVAQREFTQIYPQAGW
                     VEHNPMEIWSSQSSTLNEVVAKAGIKPDSIAAIGITNQRETTIVWEKETGKPVYNAIV
                     WQCRRTSDITDKLKADGHEEYIRKTTGLVVDPYFSGTKVKWILDNVEGAREKAERGEL
                     LFGTVDTWLVWKLTQGRVHVTDYTNASRTMLFNIHTKQWDDKMLELLNIPRSMLPEVK
                     NSSEVYGQTNIGGQGGVRIPVAGIAGDQQAALYGHLCVKEGQAKNTYGTGCFMLMHTG
                     NTAIQSENGLLTTIACNAKGEPEYALEGSVFIAGASIQWLRDELKIVHDSFDSEYFAT
                     KEDDSNGVYVVPAFTGLGAPYWDPYARGSIFGLTRGANRNHIVRATLESIAYQTRDVL
                     EAMQSDSKAKLQALRVDGGATANNFLMQFQADILDTKVERPKVKEVTALGAAYLAGIA
                     VGFWKDLEELKDKAEIERTFTPDGDQEKRAKRYKGWKKAVRRSLEWAKEDAEE"
     gene            4552..5094
                     /locus_tag="PXC99_001979"
     CDS             4552..5094
                     /locus_tag="PXC99_001979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HDL5418411.1"
                     /translation="MSQFQIHTIESAPETAQEALKAVQQANGFIPNLIGVLANAPTAL
                     ETYRTVGGINSRNSLTAEEREVVQITAAVVNGCGFCVAGHTKIALKALKMPEEVVNAL
                     RATARIDDNKLDTLARFTLAVMLQKAKLTEAQLNEFFAAGYNQQNAIDVILGVSLATL
                     CNYVNNIAEIPINPELQPFA"
     gene            complement(5215..6273)
                     /locus_tag="PXC99_001980"
     CDS             complement(5215..6273)
                     /locus_tag="PXC99_001980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA/acyl-ACP dehydrogenase"
                     /protein_id="HDL5418412.1"
                     /translation="MSVLSSSFIQWLQQNAENLDQSNERADLLIPQIAALGLYKIGVP
                     ETLGGSGGTLVDAIKAVTELGNHSLAAAFVSWGHRTFIEHIIASKNPIPRQSYLADLL
                     NGNLTAGTGLSNAMKFLSGIEELNVNIREENGKRYLNGRLPWVTNLRSYRFVASFVAG
                     FQDERKPLVIAIPSTAKGLTRTKELEFIALQGTNTTSLVFENVELQDEWILADDAPEF
                     LAATRPAFLGLQFGLPFGLVERSLAEIEKSLPFRAILASEWQAQVDALNDIKTRLFNG
                     LNEEGYFVRNPKELFQARIDIVNVVAQTILLELQASGGRGYLKNDTSGFSRRWKEAAF
                     LPVVTPSAVQLRMVLANS"
     gene            complement(6428..7171)
                     /locus_tag="PXC99_001981"
     CDS             complement(6428..7171)
                     /locus_tag="PXC99_001981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5418413.1"
                     /translation="MKQKYIYGLAGLLLLLLGWQLGTALLSQRLPMASMLAPAKTWES
                     FTWLISSGEIFPHLWASLQRIAVGLLAALVIGVPLGLLLGFSKHLEMLCTPSFQLLRM
                     ISPLSWMPIIVMLLGVGDLPIYFLLAFATVWSLIISTTSGVKSIDPQWLQLGRVMSAT
                     RKELLCKIVVPAITGHVLTGLRVAVGIAWVVLVPCEMLGVNQGLGYFILDTRDRLAYS
                     ELMAVIIIIGLIGWALDSLIRLALAKGGR"
     gene            complement(7188..8186)
                     /locus_tag="PXC99_001982"
                     /pseudo
     CDS             complement(7188..8186)
                     /locus_tag="PXC99_001982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250818.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
BASE COUNT         2307 a         1858 c         1799 g         2325 t
ORIGIN      
        1 aaattgcata ttattcctta attaattaga aattttattg atttagatta tagagattag
       61 ttttatttat tgatatagta cgtgccgatt aatttgatga aaaatgcaga ttttttcaaa
      121 cacagagttt catttactta tttaggagca aaaaattatg tctgcgatgt ttattatcca
      181 atttgccata gtgttactat gcattttggt tggcgcccgt gtaggcggta tcggattagg
      241 ggtgttcggt ggcttgggct tagccattct ttcatttggg tttgggctaa aacctgccgg
      301 tttaccgatt gatgtaatgt ttatgattat ggcggttgtg tcggctgcag cagccatgca
      361 agcagccggt ggtttggact atatgatcaa aattgccact cgcattttgc gtaaaaaccc
      421 gaaatacatt acctttatcg caccgcttgt aacttggaca ttcaccgtgc ttgccggtac
      481 aggtcacgtt gcttattctg tattacctgt aattgcagag gtaagccgcc acaacggtat
      541 ccgccctgag cgtccacttt caatggcagt aatcgcctca caatttgcga ttgtcgccag
      601 cccgattgct gcggcagtag ttgctgtggt tgccttcctt gaacctcaag gtgttacatt
      661 gggtaacgtg ttaagtgtga ctattcctgc gaccttattg ggcttaggtt tagcttgtgt
      721 gtttgtaaat aaaatgggca aagaattaaa agacgaccca aattatcaac gcttattgca
      781 agaccctgaa tatgtgaaag aaaatcacat tactaccaat ccaaccgaat taccgttaaa
      841 accgactgcg aaattatcag taggcttatt cctattcggt gcattattag tggtattaat
      901 gggcgcaatt ccagctcttc gccctgtgtt tgatggtaag ccgatgggga tggctcacac
      961 gattgaaatt gtgatgttaa gtattggtgc gttgattatc ttcttctgca aaccggacgg
     1021 taatgaaatc accaaaggtt ctgtcttcca cgccggtatg cgtgcagtga ttgcgatttt
     1081 cggtattgct tggttaggcg ataccttaat gcaaggtcat atggacgaag tgaaatcaat
     1141 ggtttcaggc ttagttgaaa ccgcaccttg ggcatttgct ttcgcattat tcgtactttc
     1201 cgtattggta aacagccaag gggcaacggt tgcaacctta ttccctgtag cgattgctat
     1261 cggcattcct gcaccggtgc taatcggggt atttgtggcg gtaaacggct acttcttcat
     1321 tccgaactac ggcccgatta ttgcctcgat tgacttcgac accaccggca caacccgtat
     1381 cggtaaatat attttcaacc atagctttat gttaccgggc ttacttagta tgattttcag
     1441 tatcggattt ggtttattac tttccaatat cctactttaa tcgctcgcaa aacctcccgt
     1501 ttgggaggtt ttttatttgc aaaattttca gcaaaaacga ccgcttgtaa cggctcttgc
     1561 aagcattaca cctatcaaag taagcaaaag cccaccgatt aaatgtaaac tcagcactgt
     1621 cacaaactgc ccccattttt ctgctaatag tttttccgtt agttctaaag agaaactgga
     1681 aaaggtggta aaactgccta aaaaaccgct gatgaacagc aaccgctggc tctcgcctaa
     1741 attaaacccc attgcaatac caattaacaa acaaccaagc caatttgctg ctaaagtacc
     1801 aaaggcgaat tggctgagta tcgggtttag ccaaacggct aattgccagc ggcacatagc
     1861 tccaagtacc gccccgattg aaatcataag tattgaagac atcatttttc ctcatctaac
     1921 gttttctcac atcataccta aaaatgagtg atttagaaaa ataatgtgat ggatttcaca
     1981 aatttgaaac ttcctatttg cttaaaaaat gccgctttgg caatatcact ccgaaatatg
     2041 ttcatattca aacatttttt catcactttc caatcatttt catcttaagg agaaacttta
     2101 tgagcaaatc cttacgtaat gcctgtattg gcgaatttat cggtacaggt tttattcttt
     2161 tctttggtgc tggttgtgtt gctgctgctc aggtagccgg tgcgaatttc ggtttatggg
     2221 aaatttccat cgtttggggg cttggtgttt ccatggcaat ctacatttct gccggtattt
     2281 ccggtgctca ccttaaccct gcggtcacta tagcacttgc cgcattctac ggctttgaaa
     2341 agcataaaat tttgccctat gtcatcgccc aagttgccgg agcgttttgc tctgtcgcac
     2401 tgatttattt tatgtatagc gatctcttta ctgccgccga agccgctcaa ggcattactc
     2461 ggggcgaaac tgttggcttt gccggtgtgt tctccaccta tccaaaccct aatattacat
     2521 tggttaccgc cttcatcgtt gaatttgtga ttactgtggt gttgatgtcc actattttag
     2581 cgattggcga tgataaaaac ggcttgccga ataaagcctt agccgcatta ctcatcggtt
     2641 tattgattgc ggtaattggt ggagcaaccg gcccgttaac cggctttgcg atgaacccgg
     2701 ctcgtgattt tggtccgaaa ctctttgctt atcttgccgg ttggggtgaa attgctttaa
     2761 caggcggaaa agaaattccg tatttcatca ttccgattgt cgccccaatc tgcggtgcat
     2821 tattcggtgc ttggggttat aaaaacctca ttcataacaa tcttccagca aatactcagg
     2881 agtaatctat ggaaaaacaa tatatcatcg ctctcgacca aggtacaacc agctctcgtg
     2941 cggttttatt agataaaaat gccaatgtgg ttgaagtggc tcagcgtgaa tttacccaga
     3001 tttatccgca agcaggctgg gtagaacata acccgatgga aatttggtca agccaaagtt
     3061 ccaccttaaa tgaagtggtg gcaaaagccg gtattaagcc ggatagcatt gccgcaatcg
     3121 ggatcacaaa ccaacgtgaa accacgattg tgtgggaaaa agagaccggt aaacctgttt
     3181 ataatgcgat tgtgtggcaa tgtcgtcgca catcggatat taccgataaa ttaaaagcag
     3241 acggacacga ggaatatatt cgtaaaacga caggcttggt agtcgatccg tacttctccg
     3301 gcactaaagt gaagtggatt ttagataacg tagaaggggc aagagaaaaa gcagaacgtg
     3361 gcgaattgct gttcggtacg gtcgatactt ggctggtgtg gaaattaacc caagggcggg
     3421 tacacgttac cgattacacc aacgcttctc gtactatgtt gtttaacatt cacaccaaac
     3481 aatgggacga taaaatgctg gaattgctca atattccacg ctcaatgtta cctgaagtga
     3541 aaaattcatc agaagtttac gggcaaacta atatcggcgg tcaaggcggt gtgcgtattc
     3601 cggtcgcggg tattgcaggt gaccaacaag ccgctctcta cggtcattta tgcgtgaaag
     3661 aaggacaagc gaagaatacc tatggtacag gctgttttat gttgatgcac accggtaaca
     3721 ctgcgattca atctgaaaac ggtttattaa cgaccattgc gtgtaacgca aaaggcgagc
     3781 cggaatatgc gttggaaggt tcagtattta ttgccggtgc gtctattcaa tggctgcgtg
     3841 atgagctgaa aattgttcac gatagctttg acagcgaata ttttgccact aaagaagatg
     3901 actctaacgg tgtttatgtt gtacctgcct ttaccggctt aggtgctcca tattgggatc
     3961 cgtatgcacg aggctcaatt ttcggtttaa cccgtggggc aaaccgtaac cacattgtgc
     4021 gtgcgaccct agagtctatc gcttaccaaa cccgagatgt gttagaagca atgcagtctg
     4081 actccaaagc gaaactacaa gcgttacgtg tggacggtgg tgcaaccgca aacaacttct
     4141 taatgcagtt ccaagccgat attttagaca ccaaagttga gcgtccgaaa gtgaaagaag
     4201 tcactgcttt aggggcagct tatcttgcgg gtattgctgt cggcttctgg aaagatttgg
     4261 aagaactgaa agacaaagcg gaaattgaac gcaccttcac accggacggc gaccaagaaa
     4321 aacgggcgaa acgctataaa ggttggaaaa aagccgttcg ccgctcatta gaatgggcaa
     4381 aagaagacgc agaagagtaa aaacgcaacc tgtgcataaa caaagggagt ataggcaact
     4441 atactccctt taagatcttt tagttatatt aaatagtgat tttgatttgt tctaaattag
     4501 ccttttcttt atgatgagcc acaccaataa acaacctgat aaggaacatt tatgtctcaa
     4561 tttcaaattc acactattga atccgctcct gaaacggcac aagaagccct aaaagcagtg
     4621 caacaagcaa acggttttat cccaaatctg atcggcgtat tagccaacgc accaacagca
     4681 ctggaaactt accgcactgt gggtggtatt aatagtcgta acagcttaac cgctgaagaa
     4741 cgtgaagtgg tacaaatcac cgcagcagtg gtcaacggct gtggtttctg cgtggcaggt
     4801 catactaaaa tcgccttaaa agcattaaaa atgcctgaag aagtggtaaa tgctttacgt
     4861 gccacggctc gcatagacga taacaaatta gacactctgg ctcgcttcac ccttgcagta
     4921 atgttacaaa aagccaaatt aaccgaagcc caattaaacg aattttttgc cgcaggttac
     4981 aaccaacaaa atgcgattga tgtgatttta ggcgtgagct tggcaacatt atgtaactac
     5041 gttaacaaca ttgccgaaat tccaattaac cctgaattgc agccttttgc ataatagata
     5101 gccgtaaaat tgaggaagca taaaaaatgc atcctttttt atttttattg caagcggtta
     5161 tatttagact attttttgca aaataaaaga ggcaacaatt tgtctcttat ccgcttaact
     5221 attcgccagc accattctca gctgtaccgc acttggcgta acaacgggca gaaatgccgc
     5281 ttctttccaa cggcggctga agcctgaagt atcatttttc agatagccac gtccgccact
     5341 cgcttgcagt tctagcagaa tagtttgggc gacgacattg acaatgtcaa ttctcgcttg
     5401 gaaaagctct ttcggattac gcacaaaata accttcttca tttaagccat taaacagacg
     5461 agttttaata tcgttgaggg catcaacttg agcttgccac tcagaggcga gaattgcacg
     5521 gaaagggagc gatttttcga tttccgccaa actacgttca accaagccaa agggcaaacc
     5581 aaattgtaaa cctaagaacg cagggcgagt ggctgctaaa aactcaggcg cgtcatcagc
     5641 caaaatccat tcatcttgta attccacatt ctcaaatacg agagaggtag tattcgtgcc
     5701 ttgcaatgcg ataaattcca attctttggt gcgggttaag cctttggcgg tggagggaat
     5761 tgcaatcact agcggtttgc gttcgtcttg aaaaccggca acgaaactag caacaaagcg
     5821 gtatgaacgt aaattggtta cccaaggcag gcggccattt aaatagcgtt taccgttttc
     5881 ttcacgaata ttcacattca actcttcaat gccggagaga aatttcatcg cattggataa
     5941 acctgttcct gcggttaaat tgccatttag cagatccgcc aaatagcttt ggcggggaat
     6001 aggatttttt gaggcgataa tatgctcgat aaaggtacga tgtccccacg aaacaaatgc
     6061 cgcagccagc gagtgattac ccagttcggt aacggctttg atcgcatcaa ccaaagtgcc
     6121 accgctgccg ccaagcgttt ccggcacgcc gattttatat agccctagtg cggcaatttg
     6181 tggaatgagt aaatccgctc gttcgttaga ttgatctaaa ttttcggcgt tctgctgaag
     6241 ccattgaata aaagaagatg aaagaaccga cattgtgttt acctcgtata attagtttac
     6301 tttgtcgcta tcttaaatcg cttttttatg ccctagaaat aaaataaatt aaggtaatat
     6361 gctttttggg aataaacaag cggtcgattt tttgcaaaaa aatgcaattt ttcgaccgct
     6421 tgtcaattta tctgccgcct ttcgctaaag ccaagcggat taagctatcc aacgcccagc
     6481 cgattaagcc gataattata attaccgcca tcagttcgga ataggctaat cggtctcggg
     6541 tgtctaaaat aaaatagccg agtccttgat tcacgcctag catttcgcac ggtaccagca
     6601 ccacccacgc aatcccaacc gccacacgta aaccggtgag aacgtgtccg gtaatagccg
     6661 gtacaacaat tttgcacagc agttctttgc gggtagccga cattactcta cccagttgta
     6721 accattgtgg atcaatgctt tttacccctg aggtggtgga aataatcaac gaccaaacgg
     6781 tggcaaacgc cagtaaaaaa taaatcggca aatcgcctac accaagtaac atcacgataa
     6841 tcggcatcca cgaaagtggc gaaatcatac gtagtagttg gaatgacggc gtgcaaagca
     6901 tttcaaggtg cttggagaag ccgagcaata agcccagcgg tacaccaatc actaacgcag
     6961 cgagtagccc gacagcaatg cgttgcaaac tcgcccataa gtgcggaaaa atttcgccgg
     7021 aggaaatcag ccaagtaaaa ctttcccagg tttttgccgg agctaacatt gacgccatcg
     7081 gcaaccgttg gcttaacaag gctgtgccaa gctgccaacc taaaagtagc agtaataaac
     7141 cggctaagcc gtaaatatat ttctgtttca tcgttcgttc ctatcgctta tacactaatt
     7201 tgctcggttc ttgtccaacc ggtttgtaaa ttaaaggttt caacccaacc gccttgctca
     7261 atcgcttttc gcacaaaggt cggctcgtta atcgctttcg ctgcctctac cgggtcaagc
     7321 tgttgtaaaa acgcattatt gccggcaatg tgggtctgtt tgagcatttt gaccagctct
     7381 tccatatagg aatcgaacgg atacggttgg aaaccgattc gctgttggtg ccactgaggg
     7441 ttttgaattg cccctgtttc gatatattta tcccactgag cttgggttgg agccagtacc
     7501 ttttccagca ctttttgatc gtgcggcgtg tagccgctgc cccgagccaa taattgagcg
     7561 gtttctgcac ggttggcaag cgtggacact tgggcttcgg ttaagacatt caccactttt
     7621 tgcacccatt ccgggcggtg ttgaatatcg tattcgtgca ttagggttaa acagcaggcg
     7681 tgatctttcc acacatcgcc actaaaacgc agcaccttcc ccacaccttt ggcttccgct
     7741 aacgcattga acggctctgc cacaataaag ccggaaattg cctcacttgc caacgctgcc
     7801 accatatctg acggagccat tacacttaat cgcacttcac cgcttttcgg ctctttttcg
     7861 gtgattttca agccattttc tcgtaataat cgttgcaaaa cgatattatg aattgaatac
     7921 caaaacggaa ttgctaccgt tttgccggag agttcggcaa tactgttgat ttcagggcga
     7981 accgttaaag ccgaacctgc caagtgattc cacattaccg ctttcaccgg agcatttgct
     8041 ccatatttcg cccacaaact cataggcgaa agcagatgca ccacgttcac attgccactt
     8101 aaaaaggctt ccaccaactg agcccagctg cgaaacatca ccggtttttc cacctgcaca
     8161 ccgtgctttt caaataagcc tttgctgatt tttgcggtag ccaagagaaa gattcgtaat
     8221 gcttaggctc ataaatcccc ttttctagtt caatgttaat gaaatgaaaa tagaggattc
     8281 gtcttataa
//
LOCUS       DANLVT010000103         8287 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.103, whole genome shotgun sequence.
ACCESSION   DANLVT010000103 DANLVT010000000
VERSION     DANLVT010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8287
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.103"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            177..554
                     /locus_tag="PXC99_001983"
     CDS             177..554
                     /locus_tag="PXC99_001983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YacL family protein"
                     /protein_id="HDL5418414.1"
                     /translation="MEYQFTHSIHGVVAKCSMDHEAFARWLNAEITENPSQLAPIFAE
                     IEKCRAAFPNHYECVFEGREYSLYFDYDEVMAKANNLDAAFDDEEMEEGFQFYNEESI
                     AFCGLDDFEKFLKAYQHFVQTYH"
     gene            643..1230
                     /gene="yihI"
                     /locus_tag="PXC99_001984"
     CDS             643..1230
                     /gene="yihI"
                     /locus_tag="PXC99_001984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Der GTPase-activating protein YihI"
                     /protein_id="HDL5418415.1"
                     /translation="MSRTKKTRRITDIMPARKTDKPKQPMPKLGGGKNRKLTRYELDA
                     QAREEKRKRKHKGLPTGSRNADPAEQKKAVVKEVKDPRIGSRKKVPLMVEFVNQPEKG
                     RTIKAVPVEPIKPTLSPEQELEQLENNECLNQLLDDLEAGKTLSAEDQKFMNECLDRI
                     DELMTELGIEYEDEEGDNGDALLRQFETMDINKFR"
     gene            1244..1711
                     /locus_tag="PXC99_001985"
     CDS             1244..1711
                     /locus_tag="PXC99_001985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2489 domain-containing protein"
                     /protein_id="HDL5418416.1"
                     /translation="MLRIFLMVLAALILISLGGYALHLMLKVRAQKKHEQALIEQAKQ
                     AQKDRYIRILDSIEVIARAMISEQCDFSEGVLRLKPLLDVLGRKLSDYTAMWALYGVV
                     ENMPILDERKNLKRNERMKLDLEREAKEAELESDIKNECYQLLKDIEEMRKAI"
     gene            1711..3078
                     /gene="hemN"
                     /locus_tag="PXC99_001986"
     CDS             1711..3078
                     /gene="hemN"
                     /locus_tag="PXC99_001986"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HDL5418417.1"
                     /translation="MSEIIWDLALIQKYNHSGPRYTSYPTALEFNENYTNEDFIRAAA
                     RYPERPLSLYVHIPFCHKLCYFCGCNKVITRHRHKVEIYLDYLEREIKTRAPLFQNRL
                     VTQIHWGGGTPTYLDEDQSARLMQMLRANFDVSDDAEISIEMDPREIELSMLDHLRAI
                     GFNRLSMGIQDFDKEVQRLVNREQDEEFIFALMKRAKELGFVSTNVDLIYGLPKQNVE
                     SFMYTLKRVVELNPDRMSVFNYAHLPSRFAAQVKIKEELLPAPETKLTILQNSIEFLG
                     KNGYKFIGMDHFAKPDDELAIAQEKGILHRNFQGYTTQEECDLLGMGVSAISLLGDTY
                     AQNRKELQQYYADVETNGIALHKGIALTQDDCIRRDVIKALICNFKLDFATIEKQYGI
                     DFKRYFAEDLAFLAPLAEDELLTMNDDSIVVSPRGRLLIRNICLCFDVYSRQLARRQQ
                     FSRII"
     gene            3152..5485
                     /gene="lptD"
                     /locus_tag="PXC99_001987"
     CDS             3152..5485
                     /gene="lptD"
                     /locus_tag="PXC99_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HDL5418418.1"
                     /translation="MKQRYSLLSLAVMAACYSNSAAADLKQQCLLGVPHFQGEVVEGD
                     QLRMPVTIEADSAVINQPRDATYTGDVTIKQGNRSIWADQVRVEQDGENARMAYLQGN
                     FNYQDNLIQATGSDATINLLSKDANLANANYQLIGRQGRGTAESGEFGNSKHTLKNAS
                     FTSCLPNDNSWQIEANEMIQHVDEEYAEMWHARFKVLGMPVFYSPYLQFPIGDRRRSG
                     LLIPSFERSSKNGWTYSQPFYWNIAPNMDSTITPTYYSRRGWQISPEFRYLTKIGQGL
                     VATEYMAKDRLSEYQPGNDDRKRYLFHWRHAMSFLTDWRFSVDYTKVSDRRYFSDFDS
                     DYGSSTDGYATQNFKLGYYQPNYNISISGKKFQTFDELDIGPYRVLPQIDFNYYKNDL
                     IKGGDFKFFAQAARFENDSKLMPKAWRFHAEPTLNFPLANRYGSLNLETKLYATYYQQ
                     TKGSESTEEIKKSVSRVLPQIKLDFKTVLESDKQLFSGYTQTLEPRVQYIYRPYKDQS
                     DIGSKAHRSVSLGYDSALLQNDYFSLFNDRRYSGLDRISSANLVTAGGTTRFFKEATG
                     EEVFNFSLGQTYYISPSKIDDTSDNSTKGHTTSWAAESNWKFHKNWNWHGSYQYDTRL
                     NQTALANMSLQYKPQSDKLIQLNYRYASKDYINQNLNTNKYGQSIKQVGGVLGWELTD
                     KVSVMTSYYHDLALKKPVEGQISLNYNTCCWAANVYVARRLVSTPVGSSDTINDFYYD
                     NKFGINFELRFGTNYSNGVTRMLKRGIIPYTEPYSIN"
     gene            complement(5627..8266)
                     /gene="ppc"
                     /locus_tag="PXC99_001988"
     CDS             complement(5627..8266)
                     /gene="ppc"
                     /locus_tag="PXC99_001988"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HDL5418419.1"
                     /translation="MNQQYSTIQHNIHMLGEFLGETIRDAQGNYILELIESIRVLSRN
                     SRAGDENAREQLLDKLANISNDDVLPVARAFSHFLNLTNIAEQHQTVSRHHIDESLGS
                     RSLDSLFLRLKSQNIPVEKVIKTVESLMIDLVLTAHPTEVTRRSLGHKHVEINKCLNL
                     LEHDDLTEAESYKIKRRLMQLIALAWHTNEIRTQRPTPVDEAKGGMAVIENSLWKAVP
                     EFCRQLNFYLEKHFGVQYPVNLAPVRFSSWMGGDRDGNPFVTAETTRRVLRMNRWKAT
                     ELFLQDIKNLAEELSITQCTPAFRAKYGNHLEPYRVLLKVLRQKLINTEIYYAELLEG
                     KISTIDESDILTSDQQLWEPLFDCYESLQACGMRIIANGALLDCLRRINCFGLGLSRL
                     DIRQESTRHEMAIAEITRYIGLGDYAHWTEDDKQAFLVRELSSRRPLIPTNWTPSPET
                     KEVLDTCKIVAEQPEGVISAYVISMAREASDVLSVHLLLKEAGCKFTIPVAPLFETLG
                     DLDHSEKVMTDLFNIGWYRGVINNYQMIMIGYSDSAKDAGMLAAGWAQYRAQEALVNL
                     CEKYNIELTLFHGRGGTIGRGGAPAHAALLSQPPRSLKNGLRVTEQGEMIRFKLGLPA
                     VAVESLELYASAILEANIFPPPEPKQQWRDVLAKASDISCQIYRDMVRGELDFVPYFR
                     SATPEQELSRLPLGSRPAKRNPKGGVESLRAIPWIFAWMQNRLMLPAWLGAGQALQQL
                     IDEGNETLLKEMCNEWPFFSTRIGMLEMVFSKADIWLAEYYDQRLVEPKLHRLGNMLR
                     TQLQADLKTVLALAHDGQLMADLPWIAESIALRNIYTDPLNLLQVELLDRIRKQGENA
                     DPVLEQALMITITGIAAGMRNTG"
BASE COUNT         2512 a         1605 c         1821 g         2349 t
ORIGIN      
        1 gtagttcctt tttgatgtat caatactaaa aataacctgt attattctag cagatttctg
       61 ggtaatcgag gagttgataa catttaaaaa ttagcgtttt gcaaaatttt ccaaaaaaag
      121 accgcttgtt aggctataat agccaaccaa acagaccaat tcaaaggaga atcggtatgg
      181 aatatcaatt tacccatagt attcacgggg tggtggcaaa atgttcgatg gatcacgagg
      241 cgtttgctcg ttggttgaat gccgaaataa cggaaaatcc tagccagtta gcccctattt
      301 tcgctgaaat agagaagtgt cgagccgcat ttccgaatca ttatgaatgt gtgtttgaag
      361 ggcgggagta tagtctctat tttgattatg atgaagtgat ggcaaaagca aacaatttag
      421 atgctgcttt tgatgatgag gaaatggaag aaggctttca attttacaat gaagagagca
      481 tcgcattttg tggcttagat gactttgaga aatttttgaa agcctaccaa cattttgtgc
      541 aaacttatca ttgattgaaa tgattaattg aaaccaaagc tattaaggga atctaattcc
      601 ttgtagaata gccgtttata gcaattttaa gatattaaat ttatgagtcg tactaaaaaa
      661 acacgtcgta ttaccgacat tatgccggca agaaagaccg ataaacctaa acagcccatg
      721 cctaaattag gtggggggaa aaatcgcaaa ctgacccgtt atgagttaga tgctcaagcc
      781 cgtgaggaaa aacgtaagcg taaacataaa ggcttgccga caggctcacg caatgctgat
      841 ccggcagagc agaaaaaagc agtggtgaaa gaggtgaaag atccgcgtat cggtagccgt
      901 aaaaaagtgc cgttaatggt ggaatttgtg aaccagccgg aaaaagggcg gacgattaag
      961 gctgtgccgg ttgagccaat caaaccaacg ctttcaccgg aacaagagct ggagcagtta
     1021 gaaaataacg aatgtttaaa tcagttgtta gatgatttgg aggcgggcaa aaccttatcc
     1081 gcagaagatc agaaatttat gaatgaatgt ttagatcgca ttgatgaatt aatgactgag
     1141 cttggcatcg aatatgaaga tgaagagggc gataatggcg atgcgttatt acgccaattt
     1201 gaaacgatgg atattaataa attccgctag gtagccgatt atgatgctaa gaatattcct
     1261 gatggtgctt gccgctttga ttttaatttc gctgggcggg tatgcactgc acttaatgct
     1321 gaaagtgcga gctcagaaaa agcacgaaca agcactgatt gaacaggcaa agcaagcaca
     1381 aaaagatcgt tatattcgga ttttagacag cattgaagtt attgctcggg caatgatttc
     1441 agaacagtgc gatttttcgg aaggcgtttt acgtttaaaa ccgctattag atgttctcgg
     1501 cagaaaatta agcgactata cggcgatgtg ggcgttgtat ggcgtggtag aaaatatgcc
     1561 gattttagat gaacgcaaaa atttaaaacg taacgaaaga atgaagttgg atttagagcg
     1621 ggaagcaaaa gaagcggagc ttgaatcaga catcaaaaat gagtgttacc aattattaaa
     1681 agatattgaa gaaatgagaa aggcaatcta atgtcagaaa ttatttggga tttagccctt
     1741 attcaaaaat ataaccattc agggcctcgt tatacctctt acccaacagc gttggagttt
     1801 aacgaaaatt acaccaatga agattttatt cgtgctgcag ctcgttaccc tgagcgtccg
     1861 ctttcgcttt atgtgcatat tccgttttgc cataaactgt gctatttctg tggctgtaat
     1921 aaagtgatta ctcgtcatcg ccataaagtt gaaatttatt tagattattt agagcgtgaa
     1981 attaaaactc gcgcacctct gtttcaaaat cgtttagtga cccaaataca ctggggtggc
     2041 ggtacgccga cttatttaga cgaagatcaa tcggcacgtt taatgcaaat gctacgagcc
     2101 aattttgatg tgagcgatga tgcggaaatc agcattgaaa tggatccgcg tgaaatcgaa
     2161 ttaagtatgt tggatcacct gcgtgctatc ggttttaacc gtctgagtat gggtattcag
     2221 gatttcgata aagaagtgca acgtttggtg aatcgtgagc aagatgaaga gtttattttt
     2281 gccttgatga aacgggcaaa agaacttggt tttgtttcaa ctaatgtgga tttgatttac
     2341 ggcttgccaa aacagaatgt ggaaagcttt atgtacacct taaaacgtgt ggtagagcta
     2401 aaccctgatc gtatgagcgt atttaactat gcccacttgc caagccgttt tgctgcacaa
     2461 gtgaaaatta aagaagagtt gttgccggct ccggaaacca aattgacgat tttgcaaaat
     2521 tccatcgaat ttttaggcaa aaacggttat aagtttatcg gtatggatca ctttgctaaa
     2581 cctgatgatg agttagctat tgcacaagaa aaaggcattt tacaccgtaa cttccaaggc
     2641 tataccactc aagaagagtg tgatttattg ggaatgggcg tatcggcaat cagcttactc
     2701 ggcgatactt acgcccaaaa ccgcaaagaa ttacaacaat actatgctga tgttgaaacc
     2761 aacggtattg cgttgcataa aggcattgcg ttaacccaag atgattgcat tcgccgtgat
     2821 gtgataaaag ccttgatttg taatttcaaa ttagattttg ccaccattga aaagcaatat
     2881 ggtattgatt ttaaacgtta ttttgccgaa gatttagctt tcttagcgcc gttggcggaa
     2941 gatgaattat taacgatgaa tgacgacagc attgtggttt ccccacgagg gcgtttattg
     3001 atccgtaata tttgcttatg ctttgatgtc tattcaagac aattagcgag aagacagcag
     3061 ttttcccgta ttatttaatg agcaagcggt cgattttggt aaaaattttg caaaaacaga
     3121 ccgcttgttc ccggcttata aaggaaaaat gatgaaacag cgttatagct tactttctct
     3181 tgctgtgatg gcagcttgtt atagcaacag tgccgcagct gatttaaagc aacaatgttt
     3241 acttggcgtg ccgcattttc agggcgaagt ggtagagggc gatcaactta gaatgcctgt
     3301 taccattgag gctgacagtg cggtcattaa ccagcctcgt gatgccacct acaccggtga
     3361 tgtaacgatc aaacaaggta accgttcgat ttgggcggat caggtgcggg ttgagcaaga
     3421 tggcgaaaat gcccgaatgg cgtatttgca gggtaatttt aactaccaag ataatttgat
     3481 tcaggcaacc ggttcagatg cgaccatcaa tctgctttcc aaagatgcga atttagctaa
     3541 tgctaattac caattaattg gcagacaagg gcgtggcacg gcagaatccg gtgaattcgg
     3601 caacagcaaa cacacgctga aaaatgccag tttcacttcg tgcttaccga atgataattc
     3661 gtggcaaatt gaagcgaatg aaatgattca gcacgttgat gaagaatatg cggaaatgtg
     3721 gcacgcccgt tttaaagtgc tgggaatgcc ggtattttat tcgccttact tacaatttcc
     3781 gattggcgac cgccgccgta gtgggttatt aattccaagt tttgagcgtt caagcaaaaa
     3841 cggctggaca tattcgcaac cgttttattg gaatatcgca ccgaatatgg actcgaccat
     3901 cactccaact tactattcac gccgtggttg gcaaatcagc ccggaatttc gttatttaac
     3961 gaaaatcggg caaggcttag tggcaaccga atatatggcg aaagatcgtt taagcgagta
     4021 ccaaccggga aatgatgatc gtaaacgcta tttattccac tggcgtcacg caatgagttt
     4081 tttaaccgat tggcgtttct cggtcgatta caccaaagtg agcgacagac gttatttctc
     4141 tgattttgat tcggattatg gtagcagtac tgatggctat gcgacgcaga attttaaatt
     4201 aggctactat cagccgaatt ataatatctc aatttcaggt aaaaaattcc aaaccttcga
     4261 tgagttggat atcgggcctt atcgcgttct gccacaaatt gattttaact attataaaaa
     4321 cgatctaatt aaaggcggag atttcaaatt ctttgcccaa gcagcccgtt ttgaaaatga
     4381 tagtaaatta atgccaaaag cgtggcgttt ccacgctgag ccaacactga atttcccatt
     4441 agcgaaccgc tatggtagct taaatttaga aaccaagctc tatgcaacct actatcaaca
     4501 aacgaaaggt agtgagagta cggaagaaat taagaaaagt gtaagtcgtg tactgccaca
     4561 gattaagctc gattttaaaa ccgtgttgga atccgataaa cagcttttct ctggctatac
     4621 tcaaacgctt gagcctcggg tgcaatatat ttatcgccca tataaggatc aaagcgatat
     4681 tggctcgaaa gcacatcgaa gtgtgagctt aggctatgac tctgcattat tgcaaaacga
     4741 ctatttctca ctgtttaatg acagacgtta tagcggttta gatcgtattt cgtcagcaaa
     4801 tttagtcacc gcaggtggca caacccgttt ctttaaagag gcaaccggtg aagaggtgtt
     4861 taatttcagc ttaggacaaa cttattatat aagcccgtct aaaattgatg atacctcaga
     4921 taacagcact aaaggtcata cgacttcatg ggcagcggaa tctaactgga aattccataa
     4981 gaattggaat tggcatggta gctatcaata tgatactcgt ttaaaccaaa cggcgttagc
     5041 gaatatgtca ttgcaataca aaccacagtc agacaaattg attcagctta attaccgcta
     5101 tgcaagtaaa gattacatca atcaaaactt gaacacgaat aagtatgggc aatccattaa
     5161 acaagtgggc ggtgtgctag gttgggaatt aaccgataaa gtgtcggtaa tgaccagtta
     5221 ttaccacgac cttgcattga aaaaaccggt ggaagggcaa atttcgctta actacaacac
     5281 ttgctgttgg gcggcaaatg tgtatgtggc tcgtcgctta gtttcaacgc cggtaggttc
     5341 atctgatacg atcaatgatt tctactatga caataaattc ggcattaact ttgagctacg
     5401 ctttggcaca aactacagca atggtgtaac ccgtatgcta aaacgaggta ttattcctta
     5461 caccgagccg tatagcatta attaacaaag taaaaacaaa taagtaaaaa tacaaatcgg
     5521 ggcgaaaaat atttgccccg atttttttat atttggctga taagcggtta aattctgttg
     5581 gaattttgca aatcttccgc taaattcaac cgcttgccat cgaaacttaa cctgtatttc
     5641 gcatacctgc ggcaatacct gtgatggtga tcatcaatgc ttgctctagt acaggatcag
     5701 cattttcacc ttgtttgcga atcctatcta acaattctac ctgaagtaga ttgagcggat
     5761 cggtataaat attgcgtagt gcaatcgatt ctgcgatcca aggtaaatcg gccattaatt
     5821 gtccatcgtg agccagtgca agtacggttt taagatcagc ctgtagttgc gtacgcaaca
     5881 tattgcctaa acggtgtagt tttggctcga ctaggcgttg gtcgtaatat tccgccagcc
     5941 aaatatcagc tttactaaat accatttcca gcattccgat acgggtcgag aaaaacggcc
     6001 attcgttaca catttctttt agtaaggttt cattaccttc atcaatcaac tgttgcaatg
     6061 cttgccctgc acctaaccaa gcaggtagca ttaagcggtt ttgcatccaa gcgaaaatcc
     6121 aaggaattgc acgcaaactc tccactccgc cttttggatt acgttttgca gggcgtgagc
     6181 caagcggcag acgggaaagt tcttgctctg gtgtagcaga gcggaaatac ggtacgaagt
     6241 ctagctcgcc acgcaccata tcacggtaaa tttggcaaga aatatcggag gcttttgcta
     6301 gcacatctcg ccattgctgc tttggctccg gtggtgggaa aatattcgct tctaaaatcg
     6361 cactggcata gagttctaaa ctttcaactg ccacggcagg taagcctaat ttaaagcgga
     6421 tcatttctcc ttgttcggtc actcgtaagc catttttgag tgagcgaggt ggctgagaaa
     6481 gtaaggctgc gtgagccggt gcgccaccac gcccgatagt accaccacga ccgtggaata
     6541 aggttaattc aatattatat ttttcacata aattaaccag agcttcttgc gcccgatatt
     6601 gcgcccagcc ggcagcaagc attccggcat ctttggcgga atcagagtag ccgatcataa
     6661 tcatttggta attgttgatg acgccacgat accagccgat attaaataaa tcggtcatca
     6721 ctttttcact atgatctaaa tcgcctagcg tttcaaataa tggggcaacc ggaatagtaa
     6781 atttgcaccc cgcctctttg agtaaaaggt gaaccgagag tacatcagag gcctctcttg
     6841 ccattgaaat gacataggct gaaatgacac cttcaggttg ctcggcaaca attttacaag
     6901 tgtctaacac ttctttagtt tcagggcttg gagtccagtt ggttggaatc aatgggcggc
     6961 gagaactgag ttcacgcact aagaatgcct gtttatcatc ttccgtccag tgagcataat
     7021 cgcctaagcc gatatagcgg gtaatttctg caatcgccat ttcgtggcgg gtactttctt
     7081 ggcgaatatc taagcgtgat aaacctaaac caaaacagtt tatacgacgt aagcaatcta
     7141 gtaatgcacc atttgcaata attcgcatac cacaggcttg taatgactca tagcaatcaa
     7201 aaagcggttc ccacaattgc tgatctgaag ttaaaatgtc actttcatca atagttgaaa
     7261 ttttaccttc caataattcc gcatagtaaa tttcggtatt aattaatttc tggcgtaata
     7321 cttttagtaa tacgcgatat ggctctaaat ggttgccata tttagcacga aatgcagggg
     7381 tacactgtgt aatcgataat tcttcagcaa gatttttaat atcttgtaag aacaattccg
     7441 tggctttcca acggttcatt cttaatacac ggcgagttgt ttctgccgtg acgaacgggt
     7501 taccgtcacg gtctccgccc atccaagaag aaaaacggac aggggctaaa tttaccggat
     7561 attgcacacc aaagtgtttt tctaaataga agttaagctg acggcaaaat tccggcacgg
     7621 ctttccataa actattttca atgactgcca taccgccttt ggcttcatca acaggggttg
     7681 ggcgttgggt tctgatttca ttagtatgcc aagcaagggc aatcagttgc attaaacggc
     7741 gcttgatttt atagctttct gcctcagtta aatcatcatg ttccaacaaa ttcaaacatt
     7801 tattgatttc aacgtgttta tgccccagcg aacggcgggt tacttccgtt gggtgagctg
     7861 ttagcactaa atcaatcatt aggctttcca cggttttaat cactttttca acggggatat
     7921 tttgtgattt tagacgaagg aacagagagt ctaatgagcg actaccaagt gattcatcaa
     7981 tatgatggcg agaaacagtt tgatgttgtt cagcaatatt tgttagattt agaaaatggc
     8041 taaatgcacg tgcaacgggt aagacatcat cgttagaaat attggctaat ttatctaata
     8101 gctgttcacg ggcgttttca tcgccggcac gagaattgcg agataacaca cgaatgcttt
     8161 cgatgagttc tagaatgtaa tttccttgcg catcacgaat cgtttctccc aaaaattcac
     8221 ctaacatatg gatattatgc tgaattgttg aatattgctg gttcataaaa aattcctatg
     8281 gtaaaca
//
LOCUS       DANLVT010000104         8031 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.104, whole genome shotgun sequence.
ACCESSION   DANLVT010000104 DANLVT010000000
VERSION     DANLVT010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8031)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8031)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8031
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.104"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            581..766
                     /locus_tag="PXC99_001989"
     CDS             581..766
                     /locus_tag="PXC99_001989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418420.1"
                     /translation="MNKMKQLAPFALLILLLGIVGRMDYDDHIQMQRYKCERNQGFWQ
                     MESNGNQYCGGKYGTKN"
     gene            750..947
                     /locus_tag="PXC99_001990"
     CDS             750..947
                     /locus_tag="PXC99_001990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418421.1"
                     /translation="MARKIDAGVEIVEVDKRFIAKFFYDGKLQHTTYPQYNRQNAIML
                     INRKIERFNIGRDKPIKLYKE"
     gene            950..1924
                     /gene="ssb"
                     /locus_tag="PXC99_001991"
     CDS             950..1924
                     /gene="ssb"
                     /locus_tag="PXC99_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL5418422.1"
                     /translation="MAGINKVIIVGRLGNDPELRTMPNGDSVAKISVATSTEWTDKTS
                     GEKKQATEWHSIIAFRNLADIIGKYLKKGSQVYVEGKLRTRKWQAQDGTDRWTTEIIA
                     DQLQMLGSSNSGNSNNNWATEPAGNPPPTNPYNHVMTDSESRDFDDDIRVRWITKEQA
                     KQFINNISTDWMKTICSFALLTGARRTEILSMTWDKIDFIRKVAIVSNDIAKSEKARS
                     LLLNDDAIELLQKQRGKNPKYVFVGSKGQALQDINRKIFNKATEKCLLVDFHFHDLRH
                     TWASWHVQAGTPLFTLKELGGWETLEMVKKYAHLNADHLLNHANSVKF"
     gene            complement(2011..2087)
                     /locus_tag="PXC99_001992"
     tRNA            complement(2011..2087)
                     /locus_tag="PXC99_001992"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2051..2053),aa:Arg,seq:tct)
     gene            complement(2112..2188)
                     /locus_tag="PXC99_001993"
     tRNA            complement(2112..2188)
                     /locus_tag="PXC99_001993"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2152..2154),aa:Pro,seq:tgg)
     gene            2358..3218
                     /gene="folD"
                     /locus_tag="PXC99_001994"
     CDS             2358..3218
                     /gene="folD"
                     /locus_tag="PXC99_001994"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HDL5418423.1"
                     /translation="MTAQIISGSEVSSQIKKKVSEKIAHYLEQGKRNPGLAVILVGND
                     PASQVYVGSKRKSCAEIGIASKSYDLPEETTEAELLALIEKLNQDDSVDGILVQLPLP
                     KQIDSTKVIEAILPHKDVDGFHPYNVGRLSQRIPTLRPCTPYGVMKLLETTGVDLYGQ
                     HAVIVGASNIVGRPMALELLLGGCTVTVTHRFTKDLEHHVRQADILVVAVGKPEFIPG
                     EWVKDGAIVIDVGINRGADGKLKGDVEYSVASQKAAFITPVPGGVGPMTVAMLMQNTL
                     QTYENHLQAV"
     gene            3332..4783
                     /gene="thiI"
                     /locus_tag="PXC99_001995"
     CDS             3332..4783
                     /gene="thiI"
                     /locus_tag="PXC99_001995"
                     /EC_number="2.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HDL5418424.1"
                     /translation="MKFIIKLFPEIMIKSDSVRKRFIKILTSNIRNVLLKETENVSVV
                     RHWDFIEVRAKVDEETALVLDLLKRTPGIHHILEVEETPFTDMHDIFEQTYAAVNAEL
                     EGKTFSVRVRRKGKHDFRSLDVERYVGGGLNQRIETAKVKLTNPDVTVRIDIEHDKML
                     LIKARHEGLGGYPIGTQEDVLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEI
                     GVKQMAYHIWSRYSTSHKVRFIAINFENVVGEILEKVDNGQMGVVLKRMMVRAASRIA
                     ERFDIQAIVTGEALGQVSSQTLTNLRLIDKASDTLVLRPLITHDKEQIIAMAKAIGTD
                     DIAKSMPEFCGVISKNPTVKAIETKILEEEGNFNFEVLEQAVQTASYLDIREIAQQTE
                     KEVVSVETTTELSKNDVVLDIRSPEEVDEKPFRLDGVEVKELPFYKLSSQFSTLDQSK
                     TYLLYCQRGVMSKLQALYLKENGYSNVKVFRVK"
     gene            complement(4828..5535)
                     /locus_tag="PXC99_001996"
     CDS             complement(4828..5535)
                     /locus_tag="PXC99_001996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YwiC-like family protein"
                     /protein_id="HDL5418425.1"
                     /translation="MFKEKPVISNQHGALAMAMLPFLYAVIESGFSTLHIFFGLSWLF
                     LYFFSYPFLSLFSKKPTERNKKWAKIYFGLSILFALPLIYAQPSILQFLPIILPLGLV
                     QVHYAKQKDERNLWNDIAGILTFGIMGMAAYYLVTKQYQFEILLHPTLFFIATTFYIK
                     SMVRERRNPIYMEISIAIHLVLAMLYILCSLQAVFFAYLIATARAIIVPSFGWNVKQV
                     GMLEFPVILLFLASLIW"
     gene            complement(5603..6577)
                     /gene="pfkA"
                     /locus_tag="PXC99_001997"
     CDS             complement(5603..6577)
                     /gene="pfkA"
                     /locus_tag="PXC99_001997"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HDL5418426.1"
                     /translation="MSKKIKKIAVLTSGGDAPGMNAAIRGVVRTALNEGLEVCGIQDG
                     YYGLYHDKVIPLDRRSVSETINRGGTFLGSARFPDFKRPEVRKHCVETLKKYSIDALV
                     VIGGDGSYMGAKLLTEEFGYPCIGIPGTIDNDIVGTDYTIGYQTALETALDAIDRLRD
                     TSSSHQRISIVEIMGRHCGDLTLSAALAGGCEYVIVPEKGLDKDALMRSIEEGFHKGK
                     RHSIIAITELMTDVHALAKEIEARFGNETRATVLGHIQRGGSPCAFDRILASRMGVYA
                     VELLLQGFGGHCVGIQNEQLVHHDIIDAINNMRRPFKEELFEASRKLF"
     gene            complement(6684..7880)
                     /locus_tag="PXC99_001998"
     CDS             complement(6684..7880)
                     /locus_tag="PXC99_001998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HDL5418427.1"
                     /translation="MLNTQFRTHFPFFEKSDGWTYLDSAATTLKPDVLIEATSEFYAS
                     AGSVHRSQYDLPQTEQYELARDLVAKRFNVETREAVIWTSGTTQSINTVAYGLEHQIA
                     AGDEIVISVAEHHANFIPWQQLAQRTRAKLVVLPLNDKYEIELETLKNALSEKTKIVA
                     FNLVSNVTGVRQPAEQIIPLIRQSCSAKIVLDIAQAVCSEQVDVQKLDADFYAFSAHK
                     MYGPNGVGVLTGKLQSLEQIQPLVFGGKMLKNITESELTVAELPYRLEAGTPNIAGII
                     GFGQVLAWLEKWDFVALNHQLYDLAEYTCKRLNSYQNLQIIGQQNTPTISFVVKNQHP
                     ADIAAFLTQSKIAIRQGEHCAKPYLRHLEEVGTVRLSLAHYNNQQDVEHFFNALDFTL
                     EILQES"
BASE COUNT         2504 a         1550 c         1733 g         2244 t
ORIGIN      
        1 gcaatctcaa taattatatt ttaatggttt aaaaaacaat caattaagaa atcataacta
       61 attgaaattt aagaaatctt aaaaatactt attaaataag cttaaatttt gattgacttg
      121 taatttaagt tttcttaaac ttaattcatc aaaacgagct acggctcaat gctctttaac
      181 aattcggtgc ttgtgcggac gatattaaca acctcgggca gttgtaaagt aatgctttat
      241 aactcagtaa ggttggttag accctgacat acaaatttga acgacttgcc aaaaagaggt
      301 ggcaaggttt aggcaacaca ctcgcaaggt gtggagagct gaaaaggcaa cactggtatc
      361 agtcctaagc aatcacgctt atctcaagtt tgagtaagta cggatacaag cagcacccga
      421 cggaatggcg aaagccgggc gggcgacggc gtgggcagac acgcatttat tccaaagctc
      481 atttcaccaa gtgtgtttcg gaatacccac aactagacgc aagtcgctcc atttgcccac
      541 cgtaaaacgt gggctttttt taaccctaaa ggacaatcct atgaacaaaa tgaaacaact
      601 tgccccattt gccttgctaa ttttgctatt aggcattgtc gggcgaatgg attatgacga
      661 ccacatacaa atgcaacgtt acaaatgcga acgaaatcaa ggcttttggc aaatggaaag
      721 caacggcaac caatactgcg gagggaaata tggcacgaaa aattgatgcc ggtgttgaga
      781 ttgttgaggt agataaacga tttatcgcca agttttttta tgacggcaaa ttacagcaca
      841 caacctatcc acaatacaac cgccaaaacg caattatgtt gattaaccgc aaaattgagc
      901 ggttcaacat tggcagagac aaaccaatca aactttataa ggaataacaa tggcaggaat
      961 taacaaagtg attattgtcg gtcgcctagg taacgacccg gaactacgaa caatgccaaa
     1021 tggcgattca gtcgccaaaa tcagtgtagc aacttcaacc gaatggacgg ataaaacctc
     1081 aggcgagaaa aaacaagcca cagagtggca tagcattatc gcctttcgga atttagctga
     1141 cattatcggc aaatacctga aaaaaggctc gcaagtgtat gtggaaggca agctacgcac
     1201 tcgcaaatgg caagcccaag acggcacaga ccgctggacg accgaaatca tcgccgatca
     1261 gctacaaatg ctcggtagct caaacagcgg aaacagcaat aataattggg caaccgaacc
     1321 ggcaggaaac ccaccaccaa ccaatccata taaccacgta atgacggatt cagaatcacg
     1381 agattttgat gatgatatcc gggttcgttg gattaccaaa gaacaagcca agcagtttat
     1441 taataatatt agtactgatt ggatgaaaac tatctgctct tttgctttat taacaggagc
     1501 aaggcgaaca gaaatacttt ctatgacttg ggataaaata gattttatcc gtaaagtagc
     1561 gattgtttcg aatgatattg ccaaatctga aaaagcgaga tcgcttttac ttaatgatga
     1621 tgcaattgaa ttattacaaa agcagagagg gaaaaatcct aaatatgttt ttgtaggaag
     1681 caaagggcag gcattacaag atattaaccg caaaatattt aacaaagcga ctgaaaaatg
     1741 tttattggtt gatttccatt tccatgattt aaggcatact tgggccagtt ggcacgttca
     1801 ggccggcaca ccattattta ccttaaaaga attgggtggc tgggaaacat tagagatggt
     1861 aaagaaatat gcccatctta atgcagacca tttactcaac cacgctaact cagttaaatt
     1921 ctagtcacaa attagtcaca aagtattttt gacataggaa attaataact gatatttaaa
     1981 tgtaactatt tgaaatataa gggtaattaa tggcacgccc taaaggattc gaacctttga
     2041 cccacgcctt agaagggcgt tgctctatcc agctgagcta agggcgcaga tgaagataat
     2101 ataaaaagaa gtggtcggcg agataggatt tgaacctacg acccactggt cccaaaccag
     2161 ttgcgctacc aagctgcgct actcgccgac ataagatgtt gttgattata gatttctttg
     2221 cacaacagtc aatctttttt tgtgaatgtc ggcttaaatg attgaagttt atccgttatt
     2281 caaaattagc ttatcaaaaa ggctattttt tgagagaatg acgaatgttt tgccaagtga
     2341 tatttcggga ggtagtaatg actgcacaaa ttatttcggg gagtgaggtt tcttcacaaa
     2401 ttaaaaaaaa ggtgagtgag aaaatcgctc attatcttga acagggtaaa cgtaaccctg
     2461 gtcttgcggt cattttagtg gggaatgacc cagcctctca agtgtatgtg gggagtaaac
     2521 gcaaaagctg tgccgaaatt gggattgcgt cgaaatctta tgatttaccc gaagaaacca
     2581 cagaggctga attattagca ctgattgaaa agttgaatca agatgattcg gtcgatggga
     2641 ttttagtcca attaccgtta cctaaacaga tcgattcgac taaagtgatt gaagccatct
     2701 taccacataa agatgttgat ggattccacc cttataatgt tgggcgttta tctcagcgta
     2761 ttcccacttt acgcccttgc acgccatacg gtgtgatgaa gttgcttgaa acaactgggg
     2821 tagatttata tggtcaacac gcagtgattg taggtgcgtc taatattgtt ggtcgcccga
     2881 tggcgttaga attgttgctt ggtggttgta cagtcacagt tactcatcgc tttaccaaag
     2941 atttagagca tcacgttcgc caagcagata ttttagttgt ggcagtcggc aagcctgaat
     3001 ttattcccgg ggagtgggtt aaagacggtg ctatcgtgat tgatgtaggg attaaccgtg
     3061 gagcagacgg caaactaaaa ggtgatgtag agtattcagt tgcctcacaa aaagcggcat
     3121 ttatcacccc tgtccccggt ggggtaggcc cgatgacggt ggcaatgtta atgcaaaata
     3181 ccttgcagac gtatgaaaac catttacaag cggtctaatt ttacggatat tttgcaaatc
     3241 ctcggcattg gtcgaggatt tctttttctg ggctttttca gcagaaaagg ctaaaatact
     3301 tgccattttt attacacgat ccttattaaa tatgaaattt atcatcaaac ttttccctga
     3361 aattatgatt aaaagcgact ctgttcggaa acgctttatc aaaattttaa cctcaaatat
     3421 tcgcaacgta ttattaaaag agactgaaaa tgtgtctgtg gttcgccatt gggactttat
     3481 tgaagttcgg gcgaaagtgg acgaagaaac ggcattagtg ctggatttgc ttaaacgcac
     3541 gccgggtatt caccatattt tagaagtgga ggaaacccct tttacggata tgcacgatat
     3601 ttttgagcag acttatgccg cagtgaacgc tgaactagaa ggcaaaacgt ttagcgtgcg
     3661 ggttcgccgt aaaggaaagc acgatttccg ttctcttgat gtagagcgtt atgtcggtgg
     3721 tgggctgaat cagcggattg aaacggcgaa agtgaaatta accaacccag atgttacggt
     3781 cagaattgat attgaacatg ataaaatgtt gctgattaaa gctcgccacg aagggttagg
     3841 cgggtatcca atcggcacac aagaagatgt gttgtcattg atttcgggtg gttttgattc
     3901 gggtgtatcg agctatatgc tgattcgcag aggttctcgt gtgcattact gttttttcaa
     3961 tttaggtggt gccgcacacg aaattggcgt gaaacagatg gcatatcata tttggagccg
     4021 ttatagtacc tcgcacaaag tccgttttat cgccattaat tttgaaaatg tagtgggtga
     4081 gattttagaa aaagttgata acggacaaat gggcgtggta ttaaaacgta tgatggtgcg
     4141 agcggcaagc cgtattgccg agcgttttga tattcaagcg attgtgaccg gtgaggcgtt
     4201 ggggcaggtc tctagccaaa cactgactaa tttacgttta attgataagg catcagatac
     4261 gctggtatta cgtccgctca tcactcacga taaagagcag attattgcaa tggcaaaagc
     4321 gataggcact gacgatattg ctaaatcaat gccggagttc tgtggagtaa tttctaaaaa
     4381 tccgacggtt aaggcaatcg aaactaaaat tttggaagaa gaaggcaact ttaattttga
     4441 ggtactagaa caagcggttc aaacggcgag ttatttagat attcgtgaga tcgctcagca
     4501 aaccgaaaaa gaggttgttt cggttgaaac cacaacagaa ttgagtaaaa acgatgttgt
     4561 gctagatatt cgtagcccgg aagaggttga tgaaaaacca ttccgtttag acggggttga
     4621 agtaaaagaa ctcccgtttt ataaactttc cagccagttt agtacgcttg accaaagcaa
     4681 aacctacttg ctctattgcc aacgtggggt aatgagtaaa ctgcaggctc tttatttgaa
     4741 agagaatggc tacagcaatg taaaagtgtt tcgagtgaaa taatgcctct ttgattgcac
     4801 cttaatgatt gattaaggtg caatttttta ccaaataagg cttgctaaaa agagtaagat
     4861 cacaggaaat tcaagcattc caacttgttt aacattccag ccaaagcttg gcacaataat
     4921 ggctcgggca gttgcaatta aataagcaaa aaagaccgct tgtagagagc agagtatgta
     4981 aagcattgct aaaaccaaat gtattgcaat actgatttcc atataaattg ggtttcttcg
     5041 ctctcgcacc atactcttta tatagaaagt cgtagcaata aaaaataggg tagggtggag
     5101 cagaatctca aactgatatt gtttcgttac cagataataa gctgccattc ccattatgcc
     5161 aaaggttaga atgccggcaa tatcattcca taaattgcgt tcatcttttt gtttggcgta
     5221 gtgaacttgc actaacccaa gcggtagaat tatcggtaaa aattgcaaaa tcgaaggctg
     5281 agcgtagatc aaaggtaatg caaatagaat gcttaagcca aagtagattt tcgcccattt
     5341 tttattgcgt tcagttggct ttttactgaa aagtgagaga aaagggtagg aaaagaagta
     5401 gagaaacagc cacgacagcc caaagaaaat atgcaaagtg ctaaaaccac tttcaataac
     5461 ggcgtagaga aacggcaaca ttgccattgc taatgcaccg tgttggttgg atataacggg
     5521 tttttctttg aacattcaat ttccctctta atgtggcaaa taaaaaggcg actaaacagc
     5581 cgcctttaaa ttgtaagaaa agttagaata attttctaga ggcttcaaat aattcttctt
     5641 tgaacggacg acgcatatta ttgatcgcat caataatatc gtggtgaacc aactgctcgt
     5701 tttgaatacc gacacagtga ccgccaaagc cttgcagtaa taattccacc gcatagacgc
     5761 ccatacggga ggccaaaata cggtcgaagg cacaaggcga accaccacgt tgaatatgac
     5821 ctaatacggt tgcacgggtt tcattgccga aacgtgcttc aatttctttc gctaatgcgt
     5881 gaacatcggt catcaattct gtaattgcaa taattgaatg gcgtttacct ttgtggaaac
     5941 cttcttcaat gcttcgcatt aatgcatctt tatctaagcc tttttccggt acgatcacat
     6001 attcgcaacc accggcgagg gcagcactta gggttaaatc accacagtgg cgacccataa
     6061 tttccacaat cgaaatacgt tggtgtgaac ttgaagtatc acgcaggcgg tcaatcgcat
     6121 ctaatgcggt ttcaagggca gtttgatagc cgatggtgta atccgttccc acaatatcgt
     6181 tatcaatcgt acccggaata ccgatacaag ggtaaccaaa ttcttcggtt aataatttag
     6241 cccccatata agaaccgtcg ccaccaataa ccactaatgc atcaatgctg tattttttta
     6301 aggtttcgac acaatgtttg cgaacttctg gtcttttaaa atcagggaag cgggcagaac
     6361 ctaagaatgt accgcctcgg ttgatggttt cagacacgga acggcggtca agtgggatca
     6421 ctttatcgtg gtaaagccca tagtagccgt cttgaatacc acaaacctct aaaccttcat
     6481 taagtgcggt acgaaccaca ccacggattg ccgcgttcat tcctggtgca tcaccaccac
     6541 tggttaatac tgcaattttt ttgatttttt tactcattta aaaacacctt gttgataaat
     6601 taaagttaaa ttggaaactg gtgcaaggtt acaatattca gccttttcgt tctactaaaa
     6661 aatacgtatt tttttgattt agcttagctt tcttgcaaaa tttcaagggt aaaatctaga
     6721 gcgttgaaaa aatgctcaac atcttgttga ttattgtaat gggcaagtga aagtcgaact
     6781 gttccgacct cttctaaatg gcgtaaataa ggcttggcac aatgctcccc ttggcggatc
     6841 gcaattttac tttgggttaa gaaagcggca atatcggcag ggtgctgatt tttcaccaca
     6901 aagctaatag tcggtgtatt ttgttgcccg ataatttgca aattttgata agaatttaac
     6961 cgcttgcagg tgtattcagc caagtcataa agctgatgat taagagcgac aaaatcccat
     7021 ttttcgagcc aagctagcac ttgcccaaag ccgataatgc cggcgatatt cggcgtgcca
     7081 gcttccaagc gataaggtaa ctctgccaca gttaattcac tttccgtaat gtttttcagc
     7141 attttgccgc caaatacaag cggttgaatt tgctccaaac tttgcaattt gccggtaagc
     7201 acgcccacac cgtttggacc atacatttta tgggcggaaa aagcgtagaa atctgcatct
     7261 aatttctgaa cgtccacttg ctctgagcaa actgcttgag caatatctaa cacaatttta
     7321 gcagagcaag attggcggat aagcgggatt atttgttccg ctggctggcg aactcctgtt
     7381 acgttagaaa ctaaattaaa ggcaacaatt ttggtttttt ccgataacgc atttttaagg
     7441 gtttcaagct caatttcata cttatcatta agtggcaaca ccacgagttt cgcccttgta
     7501 cgctgtgcca actgctgcca aggaataaaa ttagcgtgat gttccgccac tgaaattaca
     7561 atttcatcgc ctgctgcaat ttgatgctcc aagccataag ccacggtgtt aatactttgg
     7621 gttgtaccgc ttgtccaaat caccgcttca cgagtttcca cattgaaacg ttttgcgact
     7681 aaatctcgag ctaattcata ttgttcggtt tgtggcaaat cgtactgact gcgatgcacc
     7741 gaccccgcag aagcgtaaaa ctcacttgtt gcttcaatga gtacatcagg tttcagcgtt
     7801 gtagcggcag aatctaaata cgtccatccg tcagattttt caaaaaaagg gaaatgggtg
     7861 cgaaattggg tgttaagcat aagttaattc ctaagagttg tggaaaattg agttaccaag
     7921 aaaataccta ttataaagga atgttttgag gtaagaagca tttcaagaaa taaatagatt
     7981 tattttgtta tctttttgtt aaattcgtgt tgactaataa aattattttt a
//
LOCUS       DANLVT010000105         8000 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.105, whole genome shotgun sequence.
ACCESSION   DANLVT010000105 DANLVT010000000
VERSION     DANLVT010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8000)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8000)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8000
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.105"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            31..774
                     /locus_tag="PXC99_001999"
     CDS             31..774
                     /locus_tag="PXC99_001999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL5418428.1"
                     /translation="MFEFIKLITAMILPPFNIILLWLLALILFSLGYKYAAYFFALLG
                     ILILYIFSIPYTSQKLGDSLVEAEPFTIEKYKNAQAIVVLGGGLRDSQELFGKLAITG
                     IPLERMRYAAYLHKETGLPILATGSSPNGTSEAKVMADEFKMFFNIETKWLENKAKTT
                     KENAIFSREILEKENIHKIILVTNQWHMKRAEMLFSQQGFEVMSASVGSGDTPDHYKL
                     NFMHFIPQAGAMNSNMLALKEWIGYWKEK"
     gene            complement(851..3049)
                     /gene="priA"
                     /locus_tag="PXC99_002000"
     CDS             complement(851..3049)
                     /gene="priA"
                     /locus_tag="PXC99_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HDL5418429.1"
                     /translation="MALNVPLHRYFDYLLPPAFNACQGGRVVVPFGRQTKIGIVVDFP
                     QTSDVPTEKLKPIKAALDSSPIFDSEMWQLLNWAARYYHAPIGEVLTGALPIKLRNGD
                     STERVQPNYFVVTEQGRKSLIIGENKKAKKQVERLTELAECAKYFEKPTACSPSAWKG
                     LLEKGYIEKIDVPFMAQAWQDSLGEFPLVNTNNRLILNKQQTLVVSRLNAQTTFASFL
                     LNGVTGSGKTEVYLQLIETVLKREEQVLLLVPEIGLTPQTVQRFKARFNVEIDVLHSN
                     MNETERLNAWLRAKNGESAIVIGTRSALFTQFQKLGVIILDEEHDSSFKQQDGWRYHA
                     RDLAVVRAKNANIPIVLGSATPSLESLHNVQNGKFIELTLTARAGNAQLANQQIIDLK
                     TQRVTAGLSERLLSMMKTQLEQGNQVMLFLNRRGFAPVLLCHECGWVCECEACNKPFT
                     YHQKQKVLRCHHCATQRVIPRQCGHCGSTHLITTGVGTEQLEQVLNQQFPHYQVTRID
                     RDSTARKGALENHLTAIREGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSALFSTDFR
                     AEEKLAQLYIQVAGRAGRAEKKGEVVLQTHYPDHPLLKTLLEQGYRAFADEALKMRQL
                     MSLPPFSSQVLFKATGKDNQQTLQLLEQLADYFSQKIQQQNGQGFQLPPPFSAPMAKK
                     AGHYRWLLLIQHPLRGALQQLLDAFDQERESLNIPNNIRLNIDIDPQEIS"
     gene            complement(3061..3673)
                     /locus_tag="PXC99_002001"
                     /pseudo
     CDS             complement(3061..3673)
                     /locus_tag="PXC99_002001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818858.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
     gene            complement(3666..4565)
                     /gene="rarD"
                     /locus_tag="PXC99_002002"
     CDS             complement(3666..4565)
                     /gene="rarD"
                     /locus_tag="PXC99_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL5418430.1"
                     /translation="MLKGILLSLSASVLFGCMYYLAIFLKPLAGVSIFGIRMLVTIPF
                     LFLALYLFKKQNEFWVFLQRLKQEPYLLLVILITASIVGGQMWLFLWAPNSGKAIEVS
                     MGYLLMPIIMVAFGKVVYKETLSLNKWLAIVVAFIGVASNILFTGKISIASLFVCTGY
                     PIYFYLRRKFGLSHLHSFVVEILYLLPVACYFISQTDMQYVETQNLNIYYFIALLGLI
                     SGTALISYTLASTILPFNLLGLLGYVEPLLMLVVSFLIGERLANESYLLMICLLISIS
                     FLVLDGMFALRQQRKRKLSVNNE"
     gene            complement(4792..6009)
                     /locus_tag="PXC99_002003"
     CDS             complement(4792..6009)
                     /locus_tag="PXC99_002003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HDL5418431.1"
                     /translation="MDRFPKSDKLAQVRYDIRGPIHKEALRLEEEGHKILKLNIGNPA
                     PFGFEAPDEILVDVIRNLPTAQGYCDSKGLYSARKAIVQYYQSKGMRGMDVNDVYIGN
                     GVSELITMSMQALLNDGDEILIPMPDYPLWTAASTLAGGKAVHYLCDEENEWFPDLED
                     IKSKITPRTKGILVINPNNPTGAVYSRQILLEIAELARQHNLIIFADEIYEKIVYDGA
                     VHHHIAALAPDVLTVTYNGLSKAYRVAGFRQGWMVLSGPKHQAKGFIEGLDMLSSMRL
                     CANTPMQHAIQTALGGYQSINEFVLPGGRLLEQRNKMHELLVQIPGISCVKAKGALYM
                     FPKIDTEMYGIKDDQKFIYDLLRQEKVLLVQGSGFNWKKPDHFRVVTLPYAHQIEEAI
                     GRLANFLKTYRQD"
     gene            6197..7501
                     /locus_tag="PXC99_002004"
     CDS             6197..7501
                     /locus_tag="PXC99_002004"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase"
                     /protein_id="HDL5418432.1"
                     /translation="MLIFHQLKQELTKSYSKVGREQGLVAIQASMPLLEANIPLLGWL
                     KTQKTSYPHFFLQYRDTDQTIATIGTLRQFYTLEAAQSFIQQHHFPLIGGLQFEGNTQ
                     FILPQFSLVKNQQNLTACFYFDSDNFEQQAVIFEQFLANFSQITELGLTDNPLVSMSA
                     TSHFEQWKANIEKAIVSIEQGDFQKVVLANAMRLHFEQPICAYSLLAQSQKTNLGCYH
                     FLWAESADVAFLGSTPERLYQRQGLHFSTEALAGTAAVTTSEVQTELNAQWLLSDPKN
                     IYENQLVVDDIENQLKDCVTEFAVSEAKIKRLHNVQHLRRQIQATLKPDTSDSDCLSK
                     IHPTAAVAGLPRQKAKGFITENEPFTRHWYAGTLGVMGNEEAEFCVTLRSALISQNSI
                     TLYAGAGIVSGSDPQSEWQEIKRKAQGMAKLLDVDLVTKGEL"
     gene            7660..>8000
                     /locus_tag="PXC99_002005"
     CDS             7660..>8000
                     /locus_tag="PXC99_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_046701250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5418433.1"
                     /translation="MKITHCKLKKSLQKKLLEFFVAEVTARTAADLLGIQPNTAALFY
                     HKIRLVIEHHLALEAHEIFEGKIEVDESYFGGHRKGKRGRGAAGKVAVFGLLKRQGKV
                     FTKYQIRNANAG"
BASE COUNT         2423 a         1733 c         1582 g         2262 t
ORIGIN      
        1 tttacttatt tttactacga tattctttct atgttcgagt tcattaaact gatcaccgca
       61 atgatcctcc cgccatttaa tattattttg ctgtggttgt tagcattaat cctcttttct
      121 ttaggctata aatacgctgc ttacttcttt gccttgttag gtattctgat tttatatatc
      181 ttcagcattc cctatacttc acagaaatta ggggattcat tagtcgaagc agagccattt
      241 accatagaga aatataaaaa tgctcaagcg attgtggtgc taggtggcgg gctacgagac
      301 agccaagagt tattcggcaa actggcaatt accggtattc cgctggaaag aatgcgttat
      361 gccgcttatc tgcataaaga aaccggctta ccgattttag cgaccggaag cagcccaaat
      421 gggacttctg aggcaaaggt tatggcagat gaatttaaaa tgttcttcaa tattgagacc
      481 aaatggctgg aaaataaggc gaaaaccacc aaagaaaatg cgattttcag ccgtgagatt
      541 ttagaaaaag agaatattca taaaatcatt cttgttacca accaatggca tatgaaacgg
      601 gctgaaatgc tgtttagcca acaaggattt gaggtgatgt ctgccagcgt cggttctggc
      661 gatacgcccg atcattacaa actcaacttt atgcacttta ttccgcaagc cggtgcaatg
      721 aatagcaata tgctggcatt aaaagagtgg attggttatt ggaaagagaa ataaccgaag
      781 ataaatagca gcaaggcagg ttttcacctg ccttcttttt gcaaaaaatc agtcaaaaac
      841 aaccgcttgt ctaactaatc tcttgtgggt caatgtcgat attcagcctg atattattcg
      901 gaatgtttaa actttccctt tcttgatcaa aggcatcgag tagctgttgt aatgctcctc
      961 ggagagggtg ttgaatcagc aataaccagc ggtaatgtcc tgctttcttc gccattgggg
     1021 ctgaaaatgg tggagggagc tggaagcctt gcccgttttg ttgctggatt ttttggctaa
     1081 aataatctgc taattgctca agcagctgta aggtttgttg attatctttg ccggtcgctt
     1141 tgaacaaaac ttgcgaggaa aatggtggca aactcattaa ttgcctcatt tttaacgcct
     1201 catcagcaaa agctcggtag ccttgttcca gcaaggtttt aagcagtggg tgatcagggt
     1261 aatgggtttg tagcaccact tcgccttttt tctccgctcg ccctgctctg cctgccacct
     1321 gtatgtaaag ctgtgctaat ttttcttccg cacgaaaatc agttgaaaat aacgctgaat
     1381 ccacattaac aatcgccacc aacgtcacat tcgggaaatg atgccctttt gccaacattt
     1441 gcgtaccaat caaaatttgg cttttgccct ctcgaatagc ggtcaaatgg ttttccaatg
     1501 cacctttgcg agcggtagaa tctctgtcta tacgagtcac ttggtaatga gggaattgct
     1561 gatttagcac ctgctcaagt tgttctgtgc cgacaccggt agttattaaa tgggttgaac
     1621 cacaatgtcc gcattggcgg ggaattaccc tttgggtggc acaatgatgg caacgcaaca
     1681 ctttttgctt ttggtggtaa gtaaaaggct tattacacgc ctcgcactca caaacccaac
     1741 cgcattcgtg acaaagtaat accggggcaa agccacggcg atttaaaaac agcatcactt
     1801 gattgccttg ctctaactgg gttttcatca ttgaaagcaa gcgctccgac aaaccggcag
     1861 ttacccgttg cgtttttaaa tcaataatct gctgattggc aagttgtgca ttgccggccc
     1921 gagcggttag tgtcagttcg ataaatttcc cgttttgcac attgtgcaaa ctttcaagac
     1981 ttggcgttgc cgagcccagc acaatcggaa tatttgcatt tttcgcccta accaccgcca
     2041 aatcccgtgc gtggtaacgc caaccgtctt gttgcttaaa cgagctatcg tgttcttcat
     2101 ccaagataat cacgcccaat ttttgaaact gggtaaataa agcagagcga gtgccgatta
     2161 caatcgcact ttctccattt ttcgcccgca accacgcatt taaccgctca gtttcgttca
     2221 tattcgagtg caatacgtca atttcaacgt taaagcgagc tttaaagcgt tgtaccgttt
     2281 gcggtgttag cccgatttca ggcacaagca gcagcacttg ttcctctcgc ttaagcaccg
     2341 tttcaattaa ctgcaaatac acttcggttt tgcccgagcc tgttacgcca ttgagtaaaa
     2401 agctcgcaaa agtggtttgt gcatttaaac ggctgaccac taaggtttgt tgtttattta
     2461 agatcagccg attgttagta tttactaacg gaaattcacc tagtgagtct tgccacgctt
     2521 gtgccataaa cggcacatca attttctcga tatacccttt ttcgagtaag cctttccaag
     2581 cagatgggct acaagcggtc ggtttttcaa aatattttgc acattcggca agctcggtta
     2641 accgttccac ctgctttttg gcttttttat tttcaccgat aatcagagat ttccgccctt
     2701 gctccgtcac cacaaaataa ttcggttgaa ctcgctcagt ggaatcgcca ttgcgtaatt
     2761 ttatcggtaa ggctccggtt agcacttcac caatcggggc gtggtaataa cgagccgccc
     2821 agttcagcag ttgccacatt tctgagtcaa aaatcgggct agaatccaac gctgctttaa
     2881 tcggtttgag tttttcggtt ggcacatcac tagtttgcgg gaaatcgacc acaatgccga
     2941 ttttggtctg gcgaccaaaa ggcacaacca cccgcccgcc ttggcaggca ttgaatgccg
     3001 gcggtagcaa ataatcaaaa taacgatgta acggcacatt cagtgccact ctgattaatc
     3061 tcacttctct aaaccaattt tgattgcaag cccgataaat atcgagccgc agattttatt
     3121 taaccaattt ccaaaggttt gattatgccg taaaaaacgc ccaacaggtg cagcggctaa
     3181 gactaaaata cttacccaaa taatgctggt ggataaaaac gttagcccca acagcataaa
     3241 aggtattttc caaattactg gatacaaact gcggcaataa cgccaagaaa aagagcaata
     3301 ctttcgggtt taatagattg gtaatcaacc cttgacggaa tatcttccat agaggaagtt
     3361 tgtctagatt gattttctct aacaccaacg gctctcgcca cattttaatg ccgagatagc
     3421 agagataaat tgcccctgcg tatttcagaa aattaaataa agtgggcgaa tgtgccacaa
     3481 tgcctgcaag cccgagtgaa accgcaagaa tatggcataa aatgcctgct agaatgccga
     3541 atgaagacat taagcccgac tttttcccct cagcaatagt gcgagttaaa atatagatag
     3601 tatccgaacc cggtgtaaga tttagcagaa tacaagcggt caaaaatccc caataattta
     3661 caatatcact cattattcac actcaattta cgtttacgct gctgacgaag agcaaacata
     3721 ccatctaata ctaaaaatga aatggagatc aacaagcaaa tcatcaacaa gtaagattca
     3781 tttgctaacc tttcgccaat taagaaagac accaccaaca tcaatagtgg ctcaacatag
     3841 cctaataaac caagcaaatt aaagggtaaa atcgtgctgg ctagcgtata gctgataagt
     3901 gcagtgccac taattaaacc cagtaatgca ataaaatagt aaatattgag gttttgtgtt
     3961 tcgacatatt gcatatcggt ttgagagata aaataacaag ctacagggag caaatataaa
     4021 atttctacca caaagctatg taaatggctt aagccaaact ttcggcgaag gtaaaaatag
     4081 attgggtaac ctgtgcaaac aaataaactt gctatcgaaa tttttcccgt aaacaaaata
     4141 ttactcgcta caccaatgaa agcaaccaca atcgccaacc atttattcaa ggaaagcgtt
     4201 tctttataaa ccactttgcc aaatgccacc ataataatcg gcattaatag atagcccatt
     4261 gaaacctcaa tcgcttttcc gctattggga gcccataaaa acagccacat ctgcccgccc
     4321 acaatagatg ccgtgattaa aataaccagc aataaataag gctcttgctt taggcgttga
     4381 agaaataccc aaaactcatt ttgtttttta aataagtata aagcaaggaa aagaaaagga
     4441 atcgtaacca gcatacgaat gccgaaaatg ctcacacctg ccagcggttt tagaaagatc
     4501 gccaaatagt acatacagcc gaataacact gaggctgaaa gagataaaag aatgcctttt
     4561 aacatagtga taagaaagta attatttttt aatttttcaa atctccccta cccctctttt
     4621 ctaaagagga ttgtcgagtt ctaaataaat gaataatgtt cggaggtagg ggcgggtcca
     4681 gtgcccgccc gcaaattaat atcgttagcg gacaggcaca ggacctgtcc ctactgatat
     4741 tatagaactt acaaccctgc ttttataaag tggggtaaag ggagattcga cttagtcttg
     4801 acgataggtt ttcaagaaat tcgcaaggcg accaatcgct tcttcaattt gatgtgcata
     4861 aggcaaagtt accacacgga agtgatccgg ttttttccag ttaaaaccgg aaccttgcac
     4921 taatagcact ttttcttgtc gcaacaaatc gtagatgaat ttttggtcat ctttaatgcc
     4981 gtacatttcg gtatcaattt tcgggaacat atataacgcc cctttcgctt ttacacagct
     5041 aatacccgga atttgtacca ataattcgtg cattttattt cgttgttcca gcaaacgacc
     5101 gcccggcaac acaaattcat tgatactttg ataaccacct aatgcggttt gaatggcgtg
     5161 ttgcatcggc gtattggcac ataaacgcat agaagagagc atatccaacc cttcaataaa
     5221 acctttggct tgatgcttcg gaccgctcag caccatccag ccctgacgga aaccggcaac
     5281 acgatacgcc ttggataaac cgttataagt tacggttaat acgtccggtg caagagcagc
     5341 aatatggtga tgtaccgcac catcatagac aattttttca taaatttcgt cagcaaaaat
     5401 aattaagtta tgctgacggg caagttctgc aatttccagc aaaatttgac ggctatacac
     5461 tgctccggtc gggttattcg ggttgataac caaaatccct ttagtgcgag gcgtgatttt
     5521 cgatttaata tcttcaagat cagggaacca ctcattttct tcatcgcaca ggtaatgcac
     5581 tgctttacca ccggctaggg ttgaagctgc tgtccataac ggataatcag gcattggaat
     5641 tagaatttca tcgccatcat ttaataacgc ctgcatcgac attgtaatca gttcagatac
     5701 gccgttgccg atgtaaacat cgtttacatc cataccacgc ataccttttg attgataata
     5761 ttgcacaatc gctttgcggg cagaatacaa accttttgaa tcacaatagc cttgtgcggt
     5821 tggaagatta cgaatcacat ccactaaaat ttcatcgggt gcttcaaagc caaaaggggc
     5881 tgggttaccg atatttaatt ttaaaatttt atgcccttct tcttctaagc gaagtgcctc
     5941 tttatgaatt ggcccacgga tatcgtaacg aacctgagct aacttatctg atttgggaaa
     6001 acgatccatt gtaaacttcc tataatgtat tatctaattg tagtctcatc ccgctgttca
     6061 aaaaatcggt aattcggaat gaatttgtaa acattactct aatttgggag gaaaaaaaag
     6121 aggaaatacg ttaaaatgga gacctttttt tcaatcagct aaaaacaagc ggtttctttt
     6181 tctgattttt ttgcaaatgc ttatttttca tcaattaaaa caagaactta caaaaagtta
     6241 ctcaaaagtg ggaagagagc aaggattggt cgccattcaa gcctctatgc cgctattgga
     6301 ggcaaatatt ccgctactcg gttggttgaa aacacaaaaa acaagctacc ctcacttttt
     6361 tctgcaatat cgtgatacag atcagaccat tgccaccatt ggcacacttc gccaatttta
     6421 tacgctagaa gctgcacaat cttttattca acaacatcat ttcccgttaa tcggcgggct
     6481 tcaatttgaa ggcaatacgc aatttatttt gcctcaattt tcattggtaa aaaatcagca
     6541 aaatttaacc gcttgcttct attttgatag tgataacttt gaacaacaag cggttatttt
     6601 tgaacaattt cttgcaaatt tcagccaaat taccgaatta ggactaacgg ataatccgct
     6661 cgtttcaatg agtgccacca gccattttga gcaatggaaa gccaatattg aaaaagcgat
     6721 tgtttctatt gagcagggcg attttcaaaa agtggtattg gcaaatgcga tgagacttca
     6781 ttttgagcaa cccatttgtg cttacagctt gctggcacaa agccaaaaaa caaatttagg
     6841 ttgttaccac tttttatggg cggaaagtgc tgatgttgcc tttcttggct caacccctga
     6901 gcggctatat caacgccaag ggctacactt ttctaccgaa gccctcgccg gcaccgctgc
     6961 ggttaccacc agtgaagtgc aaaccgaact caatgcacaa tggctgttaa gtgatcccaa
     7021 aaatatctat gaaaatcaat tagtggttga tgacattgaa aaccaactca aagattgcgt
     7081 gaccgaattt gcagtatccg aggcaaaaat taagcgtttg cataatgtgc aacacctacg
     7141 ccgccaaatt caagcaacgc tcaaaccgga cacctcagat tcagattgct taagcaaaat
     7201 ccacccaact gcggcagttg cagggcttcc ccgccaaaaa gcaaagggtt ttattaccga
     7261 aaatgagcct tttacccgcc attggtatgc aggtacatta ggcgtaatgg gcaacgagga
     7321 agccgaattt tgcgtaacac tccgttctgc attaatttca caaaattcaa ttacgcttta
     7381 tgccggtgcc ggcattgtgt caggctcaga tccacaatcg gaatggcaag aaattaaacg
     7441 taaggcacaa ggaatggcaa aactgttgga tgttgattta gtaacaaaag gggaactgta
     7501 agctaggctt tcagaactta atctcttaat tatttctttc tatattttca tttccaactt
     7561 cccaacaaaa tatattattg ccaccaaatt agtagtgaat attccataat taaaaaattt
     7621 ggggctgtag tagattagca tcactgctat actacaaaaa tgaagataac ccattgtaaa
     7681 ttaaagaaat ctttgcagaa aaagcttctt gaattttttg ttgctgaagt gaccgctaga
     7741 accgctgctg atttattagg tattcaaccc aatacggcag ccctgtttta ccacaaaatt
     7801 aggctggtca ttgaacacca tttagccctt gaagctcatg aaatttttga gggaaaaatt
     7861 gaggtagatg aaagctattt tggtggtcat cgcaaaggaa aacgagggcg aggtgcggct
     7921 gggaaagtcg ctgtattcgg tttgttgaag cgtcaaggaa aggtgtttac aaaataccaa
     7981 atcagaaacg ctaatgccgg
//
LOCUS       DANLVT010000106         7984 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.106, whole genome shotgun sequence.
ACCESSION   DANLVT010000106 DANLVT010000000
VERSION     DANLVT010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7984)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7984)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7984
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.106"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            18..704
                     /locus_tag="PXC99_002006"
     CDS             18..704
                     /locus_tag="PXC99_002006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5418434.1"
                     /translation="MDTLASRLKIVLDQKGLTQEKFAEQIGVSQPSVFKILNGQTRNP
                     TRIYEIANVLDVDVNWLKTGKGEAPDFAKIGKNPTAYEEESSMLRLEVLDVYASAGNG
                     SFVTGDLTAYTHAVEFENAYFAQVFQRANAKGLSIINVDGDSMEPTIGNGDLLFVDTT
                     KSAYQGDGVYVFSYGENLYVKRLQFAGDELLVISDNPLYKEWRITSENEHKFQIHGKV
                     EFMQGHIRRV"
     gene            708..1226
                     /locus_tag="PXC99_002007"
     CDS             708..1226
                     /locus_tag="PXC99_002007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418435.1"
                     /translation="MEHQNLTHLVYITSHKQIGVYSISNLNIDDLYFKGYCIQKNRVI
                     TLRADRIIKQFDDLALAENYAKNIPQDVFYLFDSLLNQQRKEKITPIYKIGLCFTGFK
                     QARKNELIQLAVDNDLRVVQNVTGAVDFLIFDKESKTVGPAKLAKAEKLGIKIIDDEE
                     FLYMLETGVVPD"
     gene            1244..1654
                     /locus_tag="PXC99_002008"
     CDS             1244..1654
                     /locus_tag="PXC99_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418436.1"
                     /translation="MFIPKSSKLKTNNYIEELNIKSIGETDMKKALTLLALSLFALPV
                     QADSLELARNKVKQIFISDEEPKVKDATWTAPFIFKVGVFDDGTKRDGYAEYVCQVLY
                     DHGFKGKGVLVSVIDIKKLVQTGDWVDLGKAKCQ"
     gene            1754..2014
                     /locus_tag="PXC99_002009"
     CDS             1754..2014
                     /locus_tag="PXC99_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excalibur calcium-binding domain-containing
                     protein"
                     /protein_id="HDL5418437.1"
                     /translation="MKKLVLSILFVISPMALAYSCNDPIPYCKEMQSCEQAKFYLNQC
                     NAGRLDRDNDGIPCENVCGKKGKSEKKDDKKSDKSKSKKTSN"
     gene            2046..2855
                     /locus_tag="PXC99_002010"
     CDS             2046..2855
                     /locus_tag="PXC99_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="HDL5418438.1"
                     /translation="MMNNQSVWHLFCDESGISGKPFYAFGALWIREDKISLFEKEIQK
                     LREKHYCTDEIKWQGTNSKRFSEFYRELVSFFFQADYLFFNCIVVQQAIVNKAFHNGD
                     YEMAKQKHFNLLICNKIEQSLYKNRINRFVLSVDDLPFKYNKADEAMHIIANNIIRKK
                     TAVANAILALNEVDSRKSSGVQLCDLLLGAILSSYQNDITSERKKELTKWIALHLGWD
                     KLTYDTLQEEKKFNIWYFYDPTKGPRIVRTRETKLKYPLLKKKEQTFQPAR"
     gene            complement(3038..4276)
                     /locus_tag="PXC99_002011"
     CDS             complement(3038..4276)
                     /locus_tag="PXC99_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
                     /protein_id="HDL5418439.1"
                     /translation="MDFLTELTNHNHRTPAVSVTVRPKPSKDNEGEKAKDISTLITHR
                     LIQLTLTDNRGFEADQLDLELDDTDGLLALPSRGAILSVGLGWQNSPLTYKGEYTVDE
                     LTHDGPPDKVTIRARSADLRGTLTNRHERSFHRTTIGKIVKQIAEENKLKPMVGKEFE
                     NEEVKHIDQTNESSINLLQRLAEQFDAIATVKNGNLIFIKAGNATTASGKLLPLFRIT
                     RSSGDSHSFSIAEGDNYKAVKAYWHNTQTGKRGEVTWDENSQVKKVTKPTMRKKTKVK
                     RGADGKPIKGKDGKSIKETVFVKGKGRQVNAVVQSKPIESDSEAIKTLPHTYATAQSA
                     INACKRNFEKLQRGVATFSLTLAEGNAELIPELPVQVSGFKAEIDSNEWIISQVTHSL
                     NKGGGFTTALEMELKPKSED"
     gene            complement(4276..4713)
                     /locus_tag="PXC99_002012"
     CDS             complement(4276..4713)
                     /locus_tag="PXC99_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5418440.1"
                     /translation="MLQQFAMMSLGYFVFMRLTIPYQDTSREMNWSHVQNDVVGAMPK
                     SQFTGKAGETMEISAELRPEITGGKMSILALEMMAEQGSAYPLISGSTFMVLGWFVID
                     RISEQETTFFADGTPRAISFSMSLKRVDDSLLANIIDEVAGFI"
     gene            complement(4715..5062)
                     /locus_tag="PXC99_002013"
     CDS             complement(4715..5062)
                     /locus_tag="PXC99_002013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418441.1"
                     /translation="MEIKTVTFSKVITAFIFHIITLFVFTQLNEQAQATFMFFWWFFI
                     SLRFILVVGIMCVGIEELKIQEYRQTKAYACFSFISNFALCLQFVYFEHLIAAILFLI
                     SYIIYHSQTVTIK"
     gene            complement(5126..5242)
                     /locus_tag="PXC99_002014"
     CDS             complement(5126..5242)
                     /locus_tag="PXC99_002014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005228340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HDL5418442.1"
                     /translation="MADIATVFHWTPNTFDEMTIVELGQWREKARLRNGVES"
     gene            complement(5266..5580)
                     /locus_tag="PXC99_002015"
     CDS             complement(5266..5580)
                     /locus_tag="PXC99_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HDL5418443.1"
                     /translation="MKKVTLKQGILRGEKRITEIEVRKPLTKQLRGTNLTSLMQLSVD
                     EWCIVLPRITTPKLDKADFATMSAADLLKLSGKALDLMSEDFDEADEEDSEEQGKGEI
                     LA"
     gene            complement(5659..6165)
                     /locus_tag="PXC99_002016"
     CDS             complement(5659..6165)
                     /locus_tag="PXC99_002016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HDL5418444.1"
                     /translation="MGLPAKLKNFNFSVDGTSYLGETTEVTQPKLAMQLEDYRAGGMI
                     APVGVNMGLEKLELEFKIGGHEEDLLKLFGGSISGNAFRFNGAYQHDDDDSVDAVELV
                     CRGRIAEIDEGSSKAGDDTEHSYKASLTYYKKTVNGVDIIEIDTLNQIYIVDGKDRLA
                     EIRKAMGL"
     gene            complement(6174..7355)
                     /locus_tag="PXC99_002017"
     CDS             complement(6174..7355)
                     /locus_tag="PXC99_002017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath protein"
                     /protein_id="HDL5418445.1"
                     /translation="MSILDTYLHGVEVVEVNAGGVTISTAATSVIGVVCTGDQADAET
                     FPLNTPVLITNPLNYLEKAGSTGTLRRTLNSIGSIVKTPTVIVRVAESDDSDTLTANI
                     VGTQENGKFTGIKALLTAQSTVFVKPKLLCVPQHDNQAVATELLSVAKKLNAFAFISD
                     NGATTKEQAYTYRQNFSQREGMMIFGDWKSYNTDKKAYDTDYAVARACALQAYIDKTV
                     GWHKNISNVELDGVTGITKAVEFDINESSTEANYLNEKGITICLNHNGFRYWGSRTLA
                     TDTRWAFQQSVRTAQIIKETIGAGLAWAVDMPLTPLRVKTILEAINNKLRSWASGDDP
                     RILGARVWVAEEITADIIKSGKFVIKYDYHWIPSLESLGLEQRVNDEYVVDLVNTLKA
                     L"
     gene            complement(7557..7787)
                     /locus_tag="PXC99_002018"
     CDS             complement(7557..7787)
                     /locus_tag="PXC99_002018"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418446.1"
                     /translation="MRNKDNTASKQASKQASKQASKQASKQASKQASKQASKQSVAQF
                     KQAPLPFPAAVVTVVQCLRKSRKSVGVFGMRL"
     gene            complement(7777..>7984)
                     /locus_tag="PXC99_002019"
     CDS             complement(7777..>7984)
                     /locus_tag="PXC99_002019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418447.1"
                     /translation="APANINSCCHQHDRDYGIRGTVTRADADKRLRECMIKNGNPIRA
                     WLFWLVVRAFGWRFYKNKEIKIEK"
BASE COUNT         2302 a         1638 c         1633 g         2411 t
ORIGIN      
        1 aaaataagga gttcctaatg gatactttgg caagtcgttt gaaaatcgtt ttagaccaaa
       61 aaggtttaac acaggaaaaa tttgcagaac aaataggtgt ttcacagcca tctgttttta
      121 aaatcctgaa tggacaaact cgaaatccca caaggattta tgaaattgca aacgtcctag
      181 atgtcgatgt aaattggctc aaaaccggca aaggcgaagc accagatttt gcgaaaatcg
      241 gaaaaaatcc gaccgcttat gaagaggaaa gctcaatgct tcgacttgag gtgttagatg
      301 tatatgcctc tgccggcaat ggtagttttg tcacgggaga cttaaccgct tacacgcacg
      361 cagtagaatt tgaaaatgcc tattttgcac aagtctttca acgtgcaaat gccaaaggct
      421 tatcaattat taatgtagat ggcgactcaa tggagccaac tatcggtaac ggtgatttgc
      481 tgttcgtaga taccactaaa tccgcttatc aaggcgatgg tgtctatgtt ttcagctatg
      541 gcgaaaactt atatgtaaaa cgcttgcagt tcgccggtga tgaattgtta gtcatttccg
      601 acaatccgct ttataaagag tggagaatca catcagaaaa tgagcataaa ttccaaattc
      661 acggtaaagt ggaatttatg caagggcata ttaggagggt ttaggtgatg gaacatcaaa
      721 atctaactca tcttgtctat attacatcac ataaacaaat tggagtttat tcgatttcta
      781 atttgaatat tgatgacctt tacttcaaag gttactgtat tcagaaaaat agagttatca
      841 cattaagagc tgatcgcatt attaaacaat ttgatgattt agctcttgcc gaaaattatg
      901 ccaaaaatat tcctcaagat gtgttttatc tatttgattc tcttctgaac cagcaacgaa
      961 aagaaaaaat aacaccgatc tataaaatcg gtttgtgttt tactggattt aagcaagcta
     1021 gaaaaaatga attaattcaa ctagcagtag ataatgattt gagagtagta caaaacgtaa
     1081 ctggtgcagt tgatttttta attttcgata aagagtcgaa aactgttgga ccagcaaaac
     1141 tagcaaaagc tgaaaagtta ggaattaaaa tcatcgatga tgaagaattt ttatatatgt
     1201 tagaaactgg cgttgtgccg gattaggttt gacttctcaa tagatgttta taccaaaatc
     1261 atctaaacta aaaactaaca attacataga agaattaaac atcaaatcaa taggggaaac
     1321 cgatatgaaa aaagcactta cactacttgc actatcacta tttgcattgc ctgtacaagc
     1381 cgatagcctc gaacttgctc gtaataaagt aaagcaaatt tttatcagtg atgaagagcc
     1441 aaaggtaaaa gatgcgactt ggactgcacc atttatcttt aaggttggag tttttgatga
     1501 cggcacgaaa agagatggct acgccgaata tgtttgccaa gttttatacg accacggatt
     1561 taaaggtaaa ggtgtgttgg ttagcgtaat cgatataaaa aaactagtcc aaacaggtga
     1621 ttgggttgat cttggcaaag ctaaatgtca gtaatacata agggacagat tattctgtct
     1681 ctttgtattt aatcattaat gaagaaacct ttttactaca cagttaatac tatattttat
     1741 aatggggttc ataatgaaaa aattagtcct ctcgatttta tttgttattt cgcctatggc
     1801 tttggcttat agctgcaatg accctatccc ttactgcaaa gaaatgcaat cttgcgagca
     1861 agcaaagttt tatttaaatc aatgcaatgc cggtcgatta gatagagata acgatggcat
     1921 accttgtgaa aatgtttgtg gcaagaaagg aaagtccgag aaaaaagacg ataagaaatc
     1981 agataaatca aaatctaaaa aaacttcaaa ttagagacag gcgttgtgcc tgattaaaag
     2041 gggtaatgat gaataaccag tcagtttggc acttattttg cgatgaatcc ggtataagcg
     2101 gtaagccttt ttatgctttc ggtgcattat ggataagaga agataaaatt agcttatttg
     2161 aaaaagaaat acagaaatta cgagaaaagc actattgcac tgatgaaata aaatggcaag
     2221 gtacaaattc taaacgcttt agtgaatttt atcgtgaatt ggttagtttt ttctttcagg
     2281 ctgattattt attttttaac tgtattgtag ttcaacaagc tattgtcaat aaagcttttc
     2341 ataacggtga ttatgaaatg gcaaaacaga agcattttaa tttattgatt tgcaacaaaa
     2401 ttgaacaatc cttatataaa aacagaataa ataggtttgt tttatctgtt gatgatctac
     2461 cttttaaata caataaagct gatgaggcaa tgcacattat cgctaataat ataattcgta
     2521 aaaagactgc cgtagcaaat gctattctag cattaaacga agtagattct cgtaaatcat
     2581 ctggcgttca actatgcgat ttattattag gagcaatatt aagtagctat caaaatgata
     2641 ttacatcgga acgtaaaaaa gaactaacaa aatggattgc tttgcaccta ggttgggata
     2701 aattaactta tgatacttta caggaggaaa agaaatttaa tatttggtat ttttacgacc
     2761 ctacaaaagg acctagaata gtaagaacga gagaaacaaa acttaaatac ccactattaa
     2821 aaaagaaaga gcagaccttc cagcctgcac ggtgagtgtc ctcaaggact tatatgtgta
     2881 aaacaacgcc caatttcctc actgggcgga atcacacaaa gtagccgccc ctatgattct
     2941 ttgtgtttta tgtaaataaa tctgtaactt tgattaatat tacttgttca agatcagaga
     3001 tgcaaggctt ttttatagtg attttataaa aatagcgtta gtcttcagac ttcggcttca
     3061 actccatctc taacgctgtc gtaaacccac cacctttatt taaactgtgc gtaacctgcg
     3121 aaattatcca ctcgttgcta tcaatctccg ccttaaagcc tgaaacctga accggtaatt
     3181 cggggataag ctccgcattg ccctcggcaa gagttaggct aaaagttgcc acacctcgtt
     3241 gtagtttttc aaaattccgt ttacaagcat taatcgctga ttgtgcggta gcgtaagtat
     3301 ggggtagggt tttaattgcc tcgctatcac tttcaatcgg tttactttgc accactgcat
     3361 taacttgcct gcctttgcct tttacaaaga cggtctcttt aatgctcttg ccgtctttgc
     3421 cttttatcgg cttgccgtct gccccacgtt ttactttagt ctttttccgc attgtgggct
     3481 tagtcacttt tttaacttgg ctgttttcgt cccacgtcac ctcgcctcgc ttgccggttt
     3541 gcgtgttgtg ccaataggct ttaaccgctt tgtagttatc cccttcggca atcgaaaagc
     3601 tatgggaatc ccccgaactg cgggtaatgc gaaacagggg taacagttta ccgcttgcgg
     3661 ttgtggcgtt tccggcttta atgaaaatca aattgccgtt tttcacggta gcaatggcat
     3721 caaattgttc tgcgaggcgt tgcaagagat taatagagct ttcgtttgtt tggtcaatgt
     3781 gtttcacctc ttcgttttca aactccttgc ccaccatcgg cttgagtttg ttctcttcgg
     3841 cgatctgttt cacaatttta ccaatggtgg tgcggtgaaa gctccgctcg tggcgattgg
     3901 tcagcgtgcc tcgcaaatca gcacttcttg cccgaatcgt gactttatca ggtgggccat
     3961 cgtgggttag ctcgtccacc gtgtattcgc ccttgtaggt cagggggctg ttttgccagc
     4021 ctaacccgac cgataaaatc gctcctcgac ttggcaaagc gagtaagcca tcagtgtcgt
     4081 ccagctctaa atccagctgg tctgcctcaa agcctcggtt gtcggttaag gtgagttgaa
     4141 ttaagcggtg cgtgatcagg gtggaaatat ctttggcttt ttcgccctca ttatctttgc
     4201 ttggctttgg gcgaaccgtc accgaaacag ccggtgtgcg gtggttatga ttggttagct
     4261 ctgttaaaaa atccattaaa taaaccctgc gacctcatca ataatattgg cgagcagact
     4321 atcatcaacc cgtttaagcg acatcgaaaa gctaattgcc cggggcgtgc cgtctgcaaa
     4381 aaaggtggtt tcctgctcgc tgattcgatc aatcacaaac cagcctagca ccataaaggt
     4441 tgaaccacta atcaacggat aagccgagcc ttgctctgcc atcatctcaa gggcaaggat
     4501 tgacattttg cccccggtaa tttcagggcg tagctcggct gaaatctcca ttgtctcccc
     4561 tgccttgccg gtaaattggc tttttggcat tgccccaacc acatcatttt gaacgtgcga
     4621 ccagttcatt tctcggctgg tgtcttgata agggattgtc aatcgcataa acacaaaata
     4681 gcctagcgac atcattgcga attgttggag catattattt aatcgttaca gtttggctat
     4741 gatatatgat gtaagaaatc aaaaataaaa ttgccgcaat aagatgctca aagtaaacaa
     4801 actgcaagca taacgcaaaa ttggatatga aactaaaaca agcataagct tttgtttgtc
     4861 ggtattcctg aattttaagt tcttcaatac caacacacat tattccaact acaaggatga
     4921 atcgcagaga aatgaagaac caccaaaaga acataaaggt agcttgagct tgctcattaa
     4981 gttgagtaaa aacaaataac gtaatgatat gaaaaatgaa tgctgtaatc actttactga
     5041 atgtaactgt tttaatttcc attttaaaat ccttatagca agcggtcgag ttttgcaaat
     5101 tttttgcgaa aaacgaccgc ttgttttaac tttccacccc atttcgtaag cgggcctttt
     5161 ctcgccattg ccctagctcg acaatcgtca tttcatcaaa ggtgttgggt gtccaatgaa
     5221 acacggtagc aatatcagca atagcgtcat caacaaactg tggaattagg ctaaaatctc
     5281 gccctttccc tgttcttcgc tgtcctcttc gtctgcctca tcgaagtctt cgctcattaa
     5341 atctaaggct ttgccggaga gttttagcaa atccgctgcc gacattgtgg caaaatcggc
     5401 tttgtctaat tttggcgtgg taatgcgtgg cagtacaata caccactcat caacgcttaa
     5461 ctgcattaat gaggtaagat ttgtgccacg cagttgtttg gttaatggct tacgcacctc
     5521 aatctcggta atacgttttt caccacgcaa aatgccttgt tttaatgtta cttttttcat
     5581 tgtttaatcc ttaattattt atcattaaaa gccccttgaa aaaaggggaa ggggctttgg
     5641 gaaaatttag gggaaaatct ataaacccat tgccttacga atttccgcta agcggtcttt
     5701 gccatcgaca atgtaaattt ggttgagggt gtcgatttcg ataatatcga caccgttcac
     5761 cgtttttttg taataggtta gcgaggcttt atagctatgc tcggtgtcat caccggcttt
     5821 gcttgagcct tcgtcaattt cagcgattcg cccacggcag actaactcta ccgcatcgac
     5881 tgaatcgtca tcgtcgtgct ggtacgcacc gttgaaacgg aacgcattac cactgattga
     5941 gccaccaaat agcttgagca aatcctcttc gtgtccgccg attttgaact caagctccag
     6001 tttctctaaa cccatattga cacccacagg ggcaatcatt ccgcctgctc ggtagtcttc
     6061 aagttgcata gccagtttcg gctgtgtgac ttcggtggtt tcgcccaaat agcttgtgcc
     6121 gtccaccgaa aaattaaaat tcttaagttt tgccggtaat cccattttta cctctataac
     6181 gctttaagtg tattgactaa atccactaca tattcatcat tgacccgttg ctctaagcct
     6241 aggctttcga gggacggaat ccaatggtaa tcgtatttaa taacaaattt gcctgatttg
     6301 ataatatctg cggtgatctc ttcagctacc cacacacgag cacctaaaat gcgagggtca
     6361 tcacccgatg cccaagagcg tagcttgttg ttaatcgcct ctagtattgt tttcacacgc
     6421 aacggtgtga gtggcatatc caccgcccaa gctaagcctg ctccgattgt ctctttaatg
     6481 atttgagccg tccgcaccga ctgctgaaac gcccagcggg tatcggtggc aagagtgcgg
     6541 gaaccccaat agcggaaacc gttatggttt aagcaaatgg taatgccttt ttcgttcagg
     6601 tagtttgcct cggttgagct ctcgttaata tcaaactcta ccgctttagt gataccggtt
     6661 acaccgtcta gctctacgtt tgagatgttt ttatgccagc cgacagtttt gtcgatatag
     6721 gcttgcaacg cacaagctcg ggccactgca taatcggtat cataggcttt tttatcagtg
     6781 ttataagatt tccagtcacc gaagatcatc attccttcac gctgagagaa attctggcga
     6841 taggtatatg cctgttcttt ggtggttgca ccgttgtctg aaataaacgc aaacgcattc
     6901 agctttttag ccacgcttaa tagttcggtc gcaacggctt gattatcgtg ctgtggtaca
     6961 caaagcaatt tcggcttaac aaacacggtt gattgagcgg ttaataacgc cttaataccg
     7021 gtaaatttgc cgttttcctg cgtgccgaca atatttgcag ttaaggtgtc gctatcgtcc
     7081 gactcggcaa ctcgcacgat caccgttggc gttttaacga ttgagccaat cgaattaagt
     7141 gtgcggcgta acgtgccggt gctacctgct ttttcaaggt aatttaacgg gttagtaatt
     7201 aaaacgggcg tattcagcgg aaaagtctcg gcatcggctt ggtctccggt gcaaactact
     7261 ccgataaccg aagtagcagc ggtggaaatg gtgacaccac ctgcattgac ctcaaccacc
     7321 tcaacaccgt gtagataggt atctaaaatt gacatagtat tccttaattg ggaaaggtta
     7381 gggttgaatg ttggggtaaa ctttaaaaaa taaccgctcg ggttgcgagc ggttcgggct
     7441 gtgaaatggg gtttaacagg attaagtgat ttcggtaaac tccggtggat actgttttcg
     7501 atacacctcc gctttatagg ctgcatagca atgcttttta tcaaaaaaca agccattcac
     7561 aaacgcatac caaaaacgcc aacgcttttt cggcttttcc gcaagcattg caccacggta
     7621 acaacggctg ctggaaaagg tagcggagct tgtttaaatt gcgctacact ttgcttgctt
     7681 gcttgcttgc ttgcttgctt gcttgcttgc ttgcttgctt gcttgcttgc ttgcttgctt
     7741 gcttgcttgc ttgcttgctt gcttgcagta ttatctttat ttctcaatct taatctcctt
     7801 atttttataa aaacgccaac caaaagctct cacaactagc caaaataacc aagccctaat
     7861 tggattgcca tttttaatca tacactcacg taagcgttta tcagcatctg ctcgtgttac
     7921 tgtgccacga atgccgtagt ctcggtcatg ttgatgacag caactgttga tattggctgg
     7981 tgcg
//
LOCUS       DANLVT010000107         7974 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.107, whole genome shotgun sequence.
ACCESSION   DANLVT010000107 DANLVT010000000
VERSION     DANLVT010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7974)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7974)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7974
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.107"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            8..862
                     /locus_tag="PXC99_002020"
     CDS             8..862
                     /locus_tag="PXC99_002020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5418448.1"
                     /translation="MRTLLFSFIALSMCLNTTKAAEKIVSTAGYASEIVAALGKADKL
                     VGVDTTSVKPQTIMEKKPKIGYRRQLSAEGILSLTPDLIILAPDAGPNAVIEQIKASG
                     IPLLHLGEKPSLAGIREDIQQIAKAIGAESEAKQLTETILADEKKLADIRSQHSTDKE
                     VLVLIDTASQGIFGLGKKSVGDHFLTLLNLNNSFNAEGNKPLANEALAASNADVILLA
                     SRNQAKESATISKLAESSPQYAQLTNTQAGKKGCVFAINILDALGFGPYTAQYAHQIL
                     TTIQPCLK"
     gene            873..1859
                     /locus_tag="PXC99_002021"
     CDS             873..1859
                     /locus_tag="PXC99_002021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5418449.1"
                     /translation="MKLHLTLIFTLIISLVICTHLGAMSLPLSAWHCNNAECESAAYI
                     LWQIRLPRLLGALFIGAALAISGATMQGLFRNPLVDPGIIGVSSGAALAAALYIVVIQ
                     PLLPESISYYALPIAAFLGGWLVTFMLYLLSQRNGQLHIAIMLLIGIALAAFSGALTG
                     ILIYVADDNQLRSLTFWSMGSLAGMNWQMVAMMAAVVFICSPLIWREHRALNALTLGE
                     EDAQYIGFDIAKVKRRLVFYVALLTGTSVACVGAIGFVGLVIPHLMRLLGGSNHRHLL
                     LNSLVCGAILLMIADTLARTLAAPAEIPIGIFTALFGAPFLAVMVWKSGKHI"
     gene            1859..2665
                     /locus_tag="PXC99_002022"
     CDS             1859..2665
                     /locus_tag="PXC99_002022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5418450.1"
                     /translation="MSNLLTCQNLSIVHQQKKLLEIQEIAFEQGKFTAIIGPNGAGKT
                     TLLKALSGNNAQTNSAVFYQHQRLTDLNGYALAQKRAMLSQQSQIAFPLKVEELVQLG
                     REPYRQSEFAKFNEKITAWAMETMSLTALKERSSIQLSGGEQHRAHIARVLAQLVPEP
                     NADLSGSWLLLDEPTNHLDIHHQYQLFSLLQKLKQQGLTIIAILHDPALAINQADHIL
                     MLKNGEKFAEMSAKAIAESCLLDELYEMKMGCRYCPHSGQYYLCPALAES"
     gene            complement(2686..3324)
                     /gene="purN"
                     /locus_tag="PXC99_002023"
     CDS             complement(2686..3324)
                     /gene="purN"
                     /locus_tag="PXC99_002023"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HDL5418451.1"
                     /translation="MKKFVVLISGNGSNLQAMIDAQKSADTSGQICGVICNKADAYGL
                     IRAKQAGIPTFVFSRKDYQSNVEMDLAIAEQIEQLGAELIVLAGYMKILTPEFTQHFA
                     GKILNIHPSLLPKYPGLNTYQRAIEAGESEHGTTIHFVNEEVDAGAVVLQAKVPIYPE
                     DEIEDVMARVVEQEHRYYPLVIEWFCSGRLVSQHGKAYLDGKLLPACGYAED"
     gene            complement(3431..5588)
                     /locus_tag="PXC99_002024"
                     /pseudo
     CDS             complement(3431..5588)
                     /locus_tag="PXC99_002024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484758.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(5642..6478)
                     /locus_tag="PXC99_002025"
     CDS             complement(5642..6478)
                     /locus_tag="PXC99_002025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HDL5418452.1"
                     /translation="MLPRISSFLASLFMAFFLLGCSVSTQSLNEQNVDSIGQIIDLNT
                     NQTISFTELLSRLSSQDYVLVGEEHTQLIHHQIELYLFNQLTKKAKLHLIALEMLNVD
                     QQPAIDRIQFNRPVNLSATDLREAIQWQKWDWKMYQDLVVESLGSNSRVIATNLTDKE
                     VEILLNGAEPLKGSVSTSSEVKQKIAQLLLSMNHGMPYPMENMVAVQQFRDRRMAEKL
                     VKNALSTSLLIAGNHHVRKDLGVPLHIAEYDRTKKVAVLMLKTEREEITSSQADYLWV
                     TQ"
     gene            complement(6636..7898)
                     /locus_tag="PXC99_002026"
     CDS             complement(6636..7898)
                     /locus_tag="PXC99_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000919159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HDL5418453.1"
                     /translation="MLKRDMNIADYDAVLWQAIQDEDRRQEEHIELIASENYASPRVM
                     QAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKALFGADYANVQPHSGSQAN
                     AAVYMALLNPGDTILGMSLAHGGHLTHGASVSFSGKIYKAEQYGITDEGLIDYEALRK
                     QAQEVKPKMIVAGFSAYSQVMDWAKMREIADEVGAYLFVDMAHVAGLIAAGVYPNPLP
                     HAHVVTTTTHKTLAGPRGGLILSASGDEEMYKKLQSAVFPAGQGGPLMHVIAAKAVCF
                     KEALEPEFKAYQQQVVKNAKAMVEVFKQRGFDVVSNGTENHLFLVSFVKQGLTGKAAD
                     AALGAANITVNKNSVPNDPQKPFVTSGIRVGTPSVTRRGFKEAEVTALAGWMCDVLDS
                     IGKDNHEQVIAETKAKVLDICKRLPVYA"
BASE COUNT         2336 a         1743 c         1495 g         2400 t
ORIGIN      
        1 gtataaaatg agaaccttac ttttttcttt cattgcccta tcaatgtgtt taaataccac
       61 aaaggcggca gaaaaaattg tttcaactgc gggctatgct tccgaaattg tcgcagcact
      121 aggaaaagct gataagttag tcggtgtgga taccacttca gttaaacctc aaacgataat
      181 ggagaaaaaa cctaaaatcg gttatcgtcg ccagctttct gctgaaggta ttctctcttt
      241 aaccccagat ttgattattt tagcccctga tgccggccct aacgcagtta ttgagcaaat
      301 taaagccagc ggtattccat tacttcactt aggagagaaa ccgagcttag cagggattcg
      361 tgaggatatt cagcaaattg ccaaggcgat tggtgcagaa tcagaggcaa aacaattaac
      421 agaaaccatt ctggcagatg aaaaaaaatt agccgacatt cgtagccaac attctactga
      481 caaagaagtc ttagtgctga ttgacactgc atcgcaaggt atctttgggc tagggaaaaa
      541 gagtgtgggt gatcatttct taaccttgtt aaatctaaac aatagtttca atgctgaggg
      601 caataagcca ctcgccaatg aggctttagc tgcaagcaat gccgatgtta ttttattagc
      661 ctcccgtaat caggcaaaag aatctgcaac gatcagtaaa ttagcagaat ccagcccaca
      721 atacgcccaa ctcacaaata cacaagcggg caaaaaaggc tgtgtttttg caatcaatat
      781 tttagatgcc ttgggctttg ggccttacac tgctcaatat gcacaccaaa ttctcaccac
      841 tattcaacct tgtttaaaat aacggatacg ctttgaaact gcatttaacc ttaattttca
      901 ctttaattat cagcttagtg atttgtaccc atttaggggc gatgtcatta cccctatccg
      961 cttggcactg caacaacgct gaatgcgaaa gtgcagccta tattttatgg caaatccgcc
     1021 tgcctcgatt actaggggca ttattcatcg gggcagccct cgctattagc ggagcaacaa
     1081 tgcaagggct gtttcgcaat ccgttagtag atccggggat tattggtgtc tcttcaggtg
     1141 ctgcattggc tgcggcatta tatattgtgg tgattcagcc actactgccg gaatcaatca
     1201 gctattatgc tctacctatt gccgcctttt tagggggctg gctggtgact tttatgctct
     1261 atttactttc tcaacgtaac gggcaactac atatcgccat tatgctatta attggtattg
     1321 ctctagctgc atttagtggc gctttaaccg gcatactgat ttatgttgcc gatgataacc
     1381 aacttcgtag tttaaccttt tggagtatgg gatctttagc aggtatgaat tggcaaatgg
     1441 tggcaatgat ggctgcggtt gtcttcattt gtagcccact tatttggcgg gaacaccgtg
     1501 cgttaaacgc cttaacatta ggtgaagaag atgcacaata cattggtttt gacattgcaa
     1561 aagtcaaacg tcgtcttgtg ttttacgttg ccttattaac cggcacaagc gttgcctgtg
     1621 ttggggctat cggctttgtc gggctggtta ttccacattt aatgcgttta ctgggaggca
     1681 gtaaccaccg ccatttatta ctcaatagtt tggtttgcgg tgcaatctta ttaatgattg
     1741 cagatactct tgccagaacc ctagccgccc cggcagaaat cccgattggt atttttaccg
     1801 ccttatttgg tgcgccattc cttgcagtaa tggtatggaa aagtgggaaa catatctaat
     1861 gagcaattta ttaacttgcc aaaatttaag catcgttcat caacaaaaaa agttgctgga
     1921 gattcaagaa attgcctttg aacaaggaaa atttaccgcc atcatcggtc caaacggagc
     1981 cggcaaaaca accttgctca aagccttaag cggtaataat gcacaaacta acagtgccgt
     2041 attttatcaa catcaacgct taacagactt aaacggatat gctctggctc aaaaacgggc
     2101 aatgctcagc caacagagcc aaattgcctt tcccttaaaa gtagaagaat tggtacaact
     2161 cggaagagag ccatatcgcc aaagtgaatt tgcaaaattt aatgaaaaaa taaccgcttg
     2221 ggctatggaa acaatgtctt taaccgcatt aaaagaaaga agtagcatac aactttccgg
     2281 tggagaacaa catcgagcgc atattgctcg agtgctggct caactcgttc ctgaaccgaa
     2341 tgccgattta agcggaagct ggcttttgct tgatgaaccc accaaccatt tggatattca
     2401 tcaccaatat cagctttttt ccttactaca aaagctgaaa caacaaggct taactatcat
     2461 tgcgattttg cacgatcctg cattggcaat aaatcaagcc gatcatatct taatgctaaa
     2521 aaatggagaa aaatttgctg aaatgtccgc taaagccatt gcagaaagtt gtttattaga
     2581 tgagctgtat gaaatgaaaa tgggctgtcg ctattgccct cacagcgggc aatattatct
     2641 ttgccctgca ttagctgaaa gttagggtgc gatgcaccct atcgtttaat cttctgcata
     2701 tccacaagca ggcagtagtt taccgtctaa atacgctttg ccgtgctgag aaactaatct
     2761 acccgaacag aaccactcaa tcaccaacgg ataatatcga tgttcttgct caaccactcg
     2821 agccattaca tcttcaatct catcttcagg ataaatcggc actttagctt gtaataccac
     2881 cgcaccagca tccacttctt cattcacgaa atgaatagtc gtgccgtgtt cactttcccc
     2941 agcctctatc gctctttgat aagtgtttag ccctgggtat ttaggtaata aggaagggtg
     3001 aatattgagt attttgccag caaaatgttg cgtaaattca ggcgttaaaa ttttcatata
     3061 gccggctaat acaattaact cagctcctaa ctgctcaatt tgttcggcaa tcgcaagatc
     3121 catttccaca ttgctttggt aatctttacg agaaaataca aatgtcggga ttcccgcctg
     3181 tttagctcga atcagcccat aggcatctgc cttattgcaa attacaccgc aaatttgacc
     3241 gcttgtatcc gcagattttt gcgcatcaat cattgcttgt aggttagaac cattccctga
     3301 aattaaaacc acaaattttt tcatattaca caccggctga atattcatcg ttctggatat
     3361 tatgccttga atctcaacat cagtacagga aagaaaaagg gcgtattggt taaaataagc
     3421 cactttcaag ctagaaacgc acctctgccc ctagtgtgta agttcgacct ctggcactat
     3481 ttgtgaaacg ataggtgtct gtatcatagt catactcttc tgcggtggaa gagttatacg
     3541 catttaaggc atcaagataa tttcggttca tcacattttg taccccggct tttaaggtta
     3601 aatgtttatt cactttgtaa tttgcatata aatcgataat caccggaata ttcggtaact
     3661 gctcgtgaat aatgttgcca tcttcgtcta aatcaatacc gacacgtttc gctttgcctg
     3721 tatatttaaa aatgctagac agtgttaatt ttttatccag caatttagcc cctagctcca
     3781 aagtcgcata atcttttggt agctgggtat aagcttcagt gccaaatcca taaagaatag
     3841 tcgcaccttt tgaagtgggt gctgtgcttt cagttcgggt ataactacca ttgacaaaaa
     3901 aagcatcgga atcgtaagcc agctcaactt cccaacctcg atttttaacc ttttcagggt
     3961 gattcacata aatttggaac tgtatagcat tggtagcatc acttgaattt cgacatactg
     4021 ttggcccaca accatacaac gagaggttat acaaatagtc tttaatgcgt gagttaaaat
     4081 ataccgcttt tagccccaag atatcattat tgagtaatac attatcttga tgaatattaa
     4141 acccaatctc ataggttttc gcactttctg gtttcaaaaa cgggttcaca ctcaagccat
     4201 ttcgactggt attaaacatt tcttgcacat taggcgaacg ggaggtttgt ttgtaactga
     4261 caaaaggttg aaaccaatca gcaacctgaa atgctaaagt ggcagaagga ttcaacttat
     4321 aatgtttttt attaacatca aacccaaaag aagggaaaca ataatccata tcatcgctat
     4381 cgcattctgg cttatatcct tttaactgat agcgtgaata gtgaagactt gaatttaaag
     4441 tgacaatgcc gtatttccat tcggtgtcta ggtaaaggga atcaatattt tgcttacctg
     4501 ccggcccaaa agcggcattg ctaatcgctc catcattatt cttactttcc ggtaaatcac
     4561 gggaatattt atttccctga ctcaaaacgg ctggtgttat tcaaatcaaa catccacatt
     4621 ttgtttttgg ttgaggcatc ttctaatgtc catagttttg catcatcgtg gaaatcttgc
     4681 ttagtttctg ttactgctgt taggaatttc agatcaatcc aatcagattg aggctggtaa
     4741 ctggattcta aggaataggt cacactatca atattacgcc ccactaagct atttttatat
     4801 tgacgtccgg acaatttaaa ctctgaatct tgatttggct taaaggcaat ttttcccata
     4861 taagattcag ggtgattttt taacccttgc atataagcag aatccgttgc cattgtgcca
     4921 ttacctcggc gataattttg actgatacta cttttgctaa aagccaataa actgccaaga
     4981 gaaccacttt ccagcacatc aacttttccg gctagtgcaa gcattccgtt ttttcccaga
     5041 tcattattgc cataattaaa acggcttaat acgccgactt tatgttgttc tagtagaata
     5101 tcttcgacat caatcgtttt aaaattagca ctaccggcta aagcattcaa tccggctgca
     5161 ccattgttgt agcctttcgc aatatcaact cgggttaaaa aattttgatc aattaaagtg
     5221 ctgaattggc tcattggccc gttaccatca gtgtggaact taccacctcc gtttgctgat
     5281 gtaccaagct gtgtttgtgg cacgccatca actaaggtat ttacccgacc aagaccactc
     5341 atattacgaa tattcacact cacgccccct tgccccgggt caatttgggt atagccacct
     5401 gcgacagaac ggacaatact atctaaactt tgcattgcat tcacattcat tgctcgagaa
     5461 ctcaccgagc cggctttact gaaattctca aaattagggt tttccacagt gccataaacc
     5521 gtcacagtat caagctccgc aatatttttc gccttttcct ctgccaatgc agtttgcgat
     5581 cctcccatac acaaaaccgg aaacaaaatg cgtgtgatta tattaaattt cataattctc
     5641 cttattgagt gacccaaaga taatctgcct gtgaagaagt aatttcttct ctctctgttt
     5701 taagcattag caccgctact ttttttgttc ggtcatattc cgcaatatgc aacggaacgc
     5761 caagatcttt gcgaacgtgg tggttacctg caatcagcaa gctagtcgat aacgcatttt
     5821 ttactaattt ttctgccatt ctgcgatcac ggaattgttg tactgccacc atattttcca
     5881 tcgggtaagg cattccgtga ttcattgaca gcaacagttg tgcgatcttt tgcttaactt
     5941 cagaggaagt ggatacagaa ccttttaatg gctccgcccc atttaataaa atttcaacct
     6001 ctttatctgt taagttagtg gctataacac gactatttga acctaagctc tctaccacta
     6061 aatcttgata catcttccaa tcccattttt gccattgaat tgcctctctt aaatccgtgg
     6121 ctgataaatt aaccggtcgg ttaaactgaa tgcgatcaat cgcaggctgc tgatccacat
     6181 ttaacatctc caacgcaatt aaatgtaact tggctttctt cgtaagttga ttaaataaat
     6241 acaattcaat ttggtggtga attaactgag tatgctcctc accaactaaa acgtaatctt
     6301 gagaagatag acgggaaagt agttcagtaa atgaaatcgt ttgattggta ttcagatcaa
     6361 taatttggcc gatagagtcc acgttttgtt cattaaggga ttgcgttgaa accgagcagc
     6421 ctaaaagaaa aaaagccata aaaaggctag ctaaaaaaga ggaaatacga ggtaacataa
     6481 caaaaaataa attaatgaga attattatca ttatgttatg taaaaaaaga aaaatcaatc
     6541 cattttcaga aaacagataa agaaaatgat tgataaaaca aaaagcggta atatttctaa
     6601 aaaatattac cgcttgaaaa agtgtaaagt tgagattatg cgtacactgg taaacgttta
     6661 caaatgtcta aaactttcgc tttagtctct gcaatcacct gttcgtgatt atccttacca
     6721 atgctatcta gcacatcgca catccagccg gctaatgctg tcacctctgc ttctttaaaa
     6781 ccacggcggg tcacagaagg cgtacccaca cgaatacctg aagtcacgaa tggtttttga
     6841 gggtcgttcg gcaccgagtt tttattcacg gtaatgttcg cagctcctaa tgcagcatct
     6901 gccgctttgc cggttaaacc ttgttttaca aagctaacaa ggaataaatg gttttccgta
     6961 ccgtttgaaa ccacatcaaa accacgttgc ttaaatacct caaccattgc ttttgcattt
     7021 tttacaactt gttgctgata tgccttaaat tccggctcta aagcttcttt aaaacaaacc
     7081 gcttttgccg caataacgtg catcaatggt ccaccttgac cagcagggaa tacggcagat
     7141 tgcagtttct tatacatttc ttcatcgcca gatgcagata aaatcaaacc acctcgaggg
     7201 ccggctaagg ttttatgggt tgttgtcgtc acgacgtgag cgtgaggaag cggatttgga
     7261 taaactcccg ccgcaattaa gcctgcaacg tgagccatat ccacaaataa atatgcccca
     7321 acttcatcgg caatctcacg catttttgcc caatccataa cttgagaata agcagagaaa
     7381 ccagcaacaa tcattttcgg tttcacttct tgggcttgtt tgcgtaatgc ttcataatca
     7441 attaagcctt catcagtaat gccgtattgt tctgctttat aaattttacc agagaagcta
     7501 actgaagcac cgtgggttaa atgcccgccg tgcgctaaac tcatacctaa aatagtgtca
     7561 cccggattaa gcaacgccat atatacggct gcattcgctt gtgagcctga atgcggttga
     7621 acgttggcat aatctgcccc gaacaatgct ttcgcacggt caatcgcaag ttgttctaca
     7681 atatccacat actcacaacc cccatagtaa cgtttacccg gataaccttc tgcatattta
     7741 ttggttaatt gtgagccttg agcctgcatt acacgtgggc ttgcatagtt ttcagatgca
     7801 attaattcaa tatgttcttc ttgacggcga tcttcatctt gaatggcttg ccataatact
     7861 gcatcgtaat cagcgatatt catatcacgt tttaacattt ttggactcct aataagctta
     7921 agtaaacgtt tgcgtaagtt gatttcacgt tattttacgc attttttagt ttca
//
LOCUS       DANLVT010000108         7863 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.108, whole genome shotgun sequence.
ACCESSION   DANLVT010000108 DANLVT010000000
VERSION     DANLVT010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7863)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7863)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7863
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.108"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            1..619
                     /locus_tag="PXC99_002027"
                     /pseudo
     CDS             1..619
                     /locus_tag="PXC99_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_021111752.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            871..2061
                     /locus_tag="PXC99_002028"
     CDS             871..2061
                     /locus_tag="PXC99_002028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000616649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine--oxo-acid transaminase"
                     /protein_id="HDL5418454.1"
                     /translation="MSTSQQLIQQTEHFGANNYLPLPIVISKAKGIWVEDPEGNRYLD
                     MLSAYSAVNQGHCHPKIVQALKDQADKVTLTSRAFYNDQLGIWYEKICKLANKEMALP
                     MNTGAEAVETAIKTARRWGYDVKGIAENQAEIIACVGNFHGRTMAAVSLSSDPDYKRG
                     FGPMLGGIKLVPYGDLEALKAAITPNTAAFLVEPIQGESGILIPPEGFLEQAYELCKE
                     NNVLFIADEIQAGLGRTGKLFATEWEGFEPDIYILGKALGGGVFPISCVLANRDILGV
                     FNPGSHGSTFGGNPLACAVSIASIDVLLEEKLAERSRELGEYFLAELKKIQNPIIKEV
                     RGRGLFIGLELHQPARPFCEKLKEKGLLCKETHDTVIRFAPPLVIEKFNLDWALEKIR
                     EVLA"
     gene            2136..3647
                     /gene="nhaC"
                     /locus_tag="PXC99_002029"
     CDS             2136..3647
                     /gene="nhaC"
                     /locus_tag="PXC99_002029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HDL5418455.1"
                     /translation="MLILQTFSKNQPLVKGGFMSNRTEITDQNIRIPFRYAILPVIIM
                     VSIMAVAIIKFEASPHVPLLIGAISAAVIAMAHGYRWETIEKGIYRGIRMALPAIVII
                     IMIGLTIGAWLGGGIVATMIYYGLKLISPSLFLVTISIICAIVTLAIGSSWSTMGTIG
                     VAAMGIGFSLGIPAPMVAGAVISGAYFGDKMSPLSDTTNLAAGITETNLFEHIRHMFI
                     TTVPAFLIALSVYFYFGMEFRAENLDLAKIEDIMQAMQEHFLISPWLLLVPLLVVVLV
                     AKKVPALPALAAGIILGWLCHVFVQGGDVSVAVITLHDGYKIESGHEMIDKLFNRGGI
                     ESMMYTISLTIVAMTFGGIAEQAGMLHSVVEKILTLAKSAGSLISATIVSAFITNVTT
                     SEQYISILLPGRMYIKAYRDKGLSSRNLSRALEDGGTVTSVLVPWNTCGVYAFSMLQV
                     SAFEYAPYAIMNWLIPLIAIGLATLNIKIERLPPEELAKEPEEITLPKRGCCP"
     gene            3764..7363
                     /gene="putA"
                     /locus_tag="PXC99_002030"
     CDS             3764..7363
                     /gene="putA"
                     /locus_tag="PXC99_002030"
                     /EC_number="1.2.1.88"
                     /EC_number="1.5.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional proline dehydrogenase/L-glutamate
                     gamma-semialdehyde dehydrogenase PutA"
                     /protein_id="HDL5418456.1"
                     /translation="MMSYQLLPNTTIRPELSRHYRFDEQTLVQNLIEQAHCDEQADNI
                     KKLTTQLVGKVRTARQKASGVDALMHEFSLSSQEGVALMCLAEALLRIPDTATADKLI
                     RDKIAKGDWRSHTGNSPSLFVNAAAWGLVITGKLVSTHSESSLSSALSRLIAKGGEPL
                     IRKGVDVAMRMLGKKFVTGETIQQAIKNGEKRFAMGYRYSYDMLGEAALTAEDAKRYY
                     NDYVASIHAVGATSKGLGVYKSSGVSVKLSAIHPRYSLSQHQRVMDELYPRLKELFLL
                     AKKYDIGLNIDAEEADRLELSLDLMDRLLADPDLAGFNGIGFVVQAYQKRCPYVIEHL
                     IETARKHNRQLMIRLVKGAYWDTEIKRAQMDGAEGYPVFSRKVHTDLNYIVCAKKLLA
                     AQDVIYPQFATHNAQTLATIYHLAQGKRFEFQCLHGMGESLYDQVVGSDNLNVQCRIY
                     APVGTYQTLLAYLVRRLLENGANSSFVSQIVDENLSVDDLAQAPVQKAELTNGTMHPK
                     IPLPVDLFDDNRVNSKGYDLTDAVSLQNLENALNELTKQHYRAEPQLANDNTSGQESR
                     KIYNPANQAELVGEVIDATENDMEQAFESAAAFQSEWANTSPAVRAECLEKMADLMEA
                     NMPQLFDLAVREAGKTLNNAIAEVREAVDFCRYYAKEVRNNIEAYKNPRGIVVAISPW
                     NFPLAIFVGEVSSALVAGNVVLAKPAEQTSLMAHYAVSLFYQAGVPKAALQCLPGRGK
                     TVGVALVADHRVNGVIFTGSTETAKNINRNLHKNEKIIPLIAETGGQNAMIVDSSALG
                     EQVVIDVLNSAFDSAGQRCSALRVLYLQRDVADHILTMLKGAMAELKVGLPQHLTTDV
                     GPVIDKVAQQRLLDHIENLKKSAKSYYQVAISSEIAENGIFVPPTLLEIDHISQLKHE
                     VFGPVLHVIRFDADKLDQVIADINSTGFGLTSGLHSRIDETVDLWLKSVHAGNLYVNR
                     NTVGAVVGVQPFGGMGLSGTGPKAGGPLYLQRLVNRQEWTLNGLQGNAQAVDFDLNFA
                     IRKVLSGAEQQTALDLAKSLARRSPLGKTYPMQGITGEKNEMIFVARPQIGISKGNLA
                     SQVQALIAIVTVGSQAVAEKSSELAKHASAFGKKLQVVDDFNSLDHLSTLIVLDLLSS
                     EEKLHHAERKGAILTYIEGLDLALSLLPLVHEKAISINTAAAGGNASLMSEMD"
     gene            7472..>7863
                     /locus_tag="PXC99_002031"
     CDS             7472..>7863
                     /locus_tag="PXC99_002031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element ISMha3 family transposase"
                     /protein_id="HDL5418457.1"
                     /translation="MRKSRLSQYKQHKLIELFVAGVIARTAAELVNVNKTTAAYYFHR
                     LRLLIYQHSPHLEMFEGEIEIDESYFGGHRKGKRGRGAAGKTAVFGLLKRDGKVYTVV
                     VPNTQSATLLPIIREKVKPDSLVYTDFYR"
BASE COUNT         2242 a         1631 c         1854 g         2136 t
ORIGIN      
        1 acataaactc attgaactgt ttgtagcagg tgtcactgct cgaacagcgg ctgagttggt
       61 gaatgtaaac aaaaccaccg ctgcctatta ctttcaccgt ttgcgattgc tcatctatca
      121 acatagccct catctggaaa tgtttgaggg tgaaattgaa gcggacgaaa gttatttcgg
      181 tggtgctcgc aaaggtaaac gagggtgtgg tgccgcaggc aaaactgccg tatttgggct
      241 gttaaaacgt gatgacaagg tttataccgt tgtcgtacca aatacgcaat ctgccacact
      301 tttgccgatt attcgggaga aagtgaagcc agacagcctt gtttacgccg atttttatcg
      361 aagctatgat gtgcttgatg tgagtgaatt taaccatttt cgtatcaatc acagcacaca
      421 cttcgctgaa aatcacaatc acattaacag aattgagaat ttttggagcc aagcaaaacg
      481 ccatttgcgt aaatttaacg gcatacctaa agctcatttt gagctgtatt tgaaggaatg
      541 cgaatagcgt tttaatcaca gtgacttaaa atctcaaatt tccattttaa aacagttggt
      601 taggggttgt ttaagttagt tatctaggac agccctaaat tttgtagttg gaatttcaac
      661 ggagaaagtt atctataaac ttacaaaagt tatagaaaat ggaggcattt ttgcttaaag
      721 tatgctatct attcatatta attgcatagt taatcaacaa ctgaagaaaa attagaagta
      781 gatcataaaa tcaacaaaaa gtccgtgctt tttagctaaa gattgttaaa ctcttttgtg
      841 ttacaagttt ttaacataaa ggagtttttt atgtctactt ctcaacaact catccaacaa
      901 accgaacatt tcggtgccaa taactaccta cctctaccta ttgttattag taaagctaaa
      961 ggcatttggg ttgaagatcc tgagggtaat cgctatttgg atatgcttag tgcctactca
     1021 gcggttaatc aagggcattg tcatccaaaa attgtacagg cactaaaaga tcaagcagac
     1081 aaagtaacgc tgacctctcg agcattttat aacgatcaac ttggtatttg gtatgaaaaa
     1141 atctgcaaac tcgctaataa agagatggca ttaccgatga atacgggtgc agaagcggta
     1201 gaaacagcga ttaaaactgc tcgccgttgg ggttatgatg tgaaaggaat tgcagaaaat
     1261 caagcagaaa tcatcgcttg tgttggcaat tttcacggac gaacaatggc tgcagtatct
     1321 ctctcgtctg atccggatta taaacgtggt ttcgggccga tgttaggtgg catcaaactt
     1381 gttccatacg gtgatttaga agcattaaaa gctgcgatta caccaaacac agcagcgttt
     1441 ttggttgagc caatccaagg tgaatctggc attcttattc cacctgaagg tttcttggaa
     1501 caggcttatg aactatgcaa agagaataat gtgctgttta ttgctgatga aattcaggca
     1561 ggtcttgggc gtactggcaa gttatttgca acagaatggg aaggctttga gccagatatt
     1621 tatattctag gtaaagcact tggtggcggg gtgttcccaa tctcttgtgt gttagcaaat
     1681 cgtgatattt taggcgtatt caatcctggc tcgcacggtt cgacatttgg tggtaatcca
     1741 ttagcctgtg cggtatctat tgcctcaatt gatgtactgt tggaagaaaa acttgcagag
     1801 cgttcccgtg agttaggtga atacttcttg gcagagctga aaaaaatcca aaatccaatt
     1861 attaaagaag ttcgtggacg tggactgttt attggcttgg agttacatca accagcacgc
     1921 ccattctgcg aaaaactcaa agaaaaaggc ttactctgca aagagaccca cgatacagtt
     1981 atccgctttg ctcccccttt ggtgattgaa aaattcaatt tggattgggc attggagaaa
     2041 attcgggagg tgttggctta attgtcattt tctctatatt ttatcctgcc aaatcgcctt
     2101 taaccctttt tggcaggaag caaaacagtt gtaaaatgct gattttgcaa actttttcca
     2161 aaaatcaacc gcttgtaaaa ggtggcttta tgtcaaacag aacagaaata acagaccaaa
     2221 atatccgaat cccgtttcgc tatgctatat tgcctgtgat tattatggta tcgattatgg
     2281 cggtggctat catcaaattt gaagcctcac ctcacgttcc gttgcttatt ggggcaatta
     2341 gtgccgctgt gattgcaatg gcacatggct accgttggga gacaattgaa aaaggaattt
     2401 atagaggcat tcgtatggct ttaccagcga ttgttatcat tattatgatt gggctaacca
     2461 tcggagcttg gctaggtggt ggaattgtag ctacgatgat ttactacggc ttgaaattga
     2521 tctctccgtc gctgttttta gtaactatct caataatttg tgctattgtg acccttgcga
     2581 ttggtagctc gtggtctaca atgggaacaa tcggtgtagc ggcgatgggg atcgggttta
     2641 gtctcggcat tccggcaccg atggttgccg gtgcggtgat ctcaggagca tatttcggcg
     2701 ataaaatgtc gccactgtca gacactacca atctggcagc agggattacc gaaaccaatc
     2761 tgtttgaaca tatccgccat atgtttatca ctaccgtgcc ggcgttcctg attgcgttat
     2821 ctgtctattt ctattttggt atggaattta gagccgaaaa tctcgatctt gctaaaattg
     2881 aagacattat gcaggcaatg caggaacatt tcttgatttc gccttggttg ctattagtgc
     2941 ctttattagt cgtggtgttg gtggcaaaaa aagtgcctgc cttaccggca ttagctgcag
     3001 ggataattct tggttggctc tgccacgttt ttgtgcaagg cggtgatgtc agcgtagcag
     3061 tgattactct gcacgacggc tataaaattg agagcggcca cgagatgatt gataagctgt
     3121 tcaaccgtgg tgggatcgag tcgatgatgt acaccatttc ccttacgatt gttgcgatga
     3181 cttttggtgg cattgcagag caagctggaa tgttacattc agtagtggaa aaaatcctta
     3241 cccttgcaaa atcagcaggt agcttaatta gtgctacgat tgtatcggca tttattacca
     3301 acgtaacgac atctgagcaa tatatttcta ttttattacc aggcagaatg tatataaaag
     3361 cctataggga taagggacta agttcgagaa acctttctcg tgcattggaa gacggaggaa
     3421 cagttacttc ggttcttgta ccttggaata cctgtggtgt ttatgcgttc tcaatgttgc
     3481 aagtgagtgc ttttgaatat gcaccgtatg caataatgaa ttggctcatt ccactgattg
     3541 cgattggctt ggcaaccttg aatatcaaaa ttgagcgatt gccaccggaa gaattagcca
     3601 aagaacctga ggaaattact ctgccaaaac gtggttgttg tccataattt atctaaatag
     3661 tatttaataa caataggtta agttaaataa caagcggtcg gttttatctt aaaatttgca
     3721 agtttataca taaatttgat cgcttgctgt atagaaagga aaaatgatgt cataccaact
     3781 tttacctaac accactatcc gtcctgaatt gagccgtcat taccgctttg atgagcaaac
     3841 cctggtgcaa aatctgatag aacaagcaca ttgtgatgaa caggctgata acattaaaaa
     3901 gctcactacc caattagtcg gtaaagtccg aactgcacgc cagaaagcaa gcggggttga
     3961 tgcgttaatg cacgaatttt cactctccag ccaagagggg gtggcgttga tgtgccttgc
     4021 cgaagcatta ctacgcattc ctgacaccgc cactgcggat aaattaattc gagacaaaat
     4081 tgccaaaggg gattggcgtt cacacaccgg caacagcccc tctctgtttg tgaatgcagc
     4141 ggcgtggggc ttggtgatta ccggcaaatt ggtttcaacc cacagcgaaa gctcactctc
     4201 atcagcactt tcacgcctga tcgccaaagg cggagaaccg ctgatccgca aaggtgtgga
     4261 cgtagcaatg cgtatgctcg gcaagaaatt tgtaacgggc gaaaccattc aacaggcgat
     4321 taaaaacggc gaaaaacgct tcgcaatggg ttatcgttac agctacgata tgctgggcga
     4381 agcggcactc accgccgaag atgccaaacg ctattacaac gactatgttg cctctattca
     4441 cgctgtgggt gccacctcga aaggcttggg cgtgtataaa tcctcgggtg tgtcggtcaa
     4501 actctccgcc attcaccctc gttattccct ttcccaacac caacgtgtga tggacgaact
     4561 ctatccacgt ctgaaagaac tgttcttgct ggcgaaaaag tatgacatcg gcttgaacat
     4621 tgatgccgaa gaagccgacc gcctcgaatt gtcgcttgat ttgatggaca gactgcttgc
     4681 cgaccctgat ttggcagggt ttaacggcat tggttttgtg gtgcaggcgt accaaaaacg
     4741 ttgcccgtat gtgatcgagc atttaattga gaccgcccgt aaacataatc gccagctaat
     4801 gattcgcttg gtaaaaggcg catattggga cactgaaatc aagcgggcgc aaatggacgg
     4861 tgcagagggc tatccggtct tctcccgtaa ggtgcatacc gatttgaact acatcgtttg
     4921 tgccaaaaaa ttgctggcgg cgcaagatgt gatctatccg caatttgcca cccacaacgc
     4981 tcaaactctc gccaccattt accacttggc acagggcaaa cgttttgagt ttcaatgctt
     5041 gcacggtatg ggagagagct tgtacgacca agtggttggc agcgataatc ttaacgtgca
     5101 atgtcgcatt tatgcccctg tcggtactta tcaaaccctg cttgcctatt tagtacgtcg
     5161 cttgttggaa aacggagcga acagctcatt tgttagccaa attgtggatg aaaatctcag
     5221 tgtagatgat ctggctcaag cccctgttca aaaagcagaa ctgaccaatg gcactatgca
     5281 cccgaaaatt ccattgccag tcgatttatt tgacgacaat cgtgttaatt ccaaaggcta
     5341 tgatttaact gatgcagtaa gcctacaaaa tttagaaaat gccctcaatg aacttaccaa
     5401 acagcattac cgtgctgaac cacagctggc aaatgataat acaagcggtc aagaaagccg
     5461 aaaaatttac aatccagcga accaagctga attagtcggc gaagtgattg atgccaccga
     5521 aaacgatatg gaacaggcgt ttgaaagtgc ggcggcgttc caaagtgaat gggcgaatac
     5581 ttcccctgcg gtgcgtgccg agtgcttaga aaaaatggcg gacttgatgg aagccaatat
     5641 gccacaactg ttcgatttgg cggtgcgtga ggcaggcaaa acgctcaaca atgcaattgc
     5701 tgaagtgcgt gaagccgtcg atttctgtcg ttattatgcc aaagaggtac gcaacaacat
     5761 tgaagcatac aaaaatccgc gtggcattgt agtagcaatt agcccgtgga actttccgtt
     5821 agcgattttt gtgggtgaag tttcatctgc gttggtggca ggcaatgtgg tactagcaaa
     5881 accagctgaa caaacttcgt taatggcaca ttatgctgtc agccttttct accaagcagg
     5941 tgtgccgaaa gcggcgttgc aatgcttacc gggtagagga aaaacggttg gggtggcgtt
     6001 ggtggcagat catcgtgtga acggcgtgat ttttactggt tcaacagaga cagctaaaaa
     6061 cattaaccgc aatttgcaca aaaacgagaa aattataccg cttattgccg aaactggcgg
     6121 acaaaatgca atgattgttg atagctcggc actgggcgag caggttgtga tagatgtttt
     6181 aaactccgca tttgactcag cagggcaacg ttgttcggca ttgcgtgtgc tgtatctgca
     6241 acgtgatgtt gccgatcaca ttctcacaat gctcaaagga gcaatggcgg agttgaaagt
     6301 tggtcttcca caacacttaa ctaccgatgt cggaccagta atcgataaag tcgcacaaca
     6361 acgcttgctc gatcatattg aaaatctcaa aaaatcggcg aaaagttact atcaggtggc
     6421 tatctcctct gaaattgccg aaaatggtat tttcgtaccg ccaacgctgt tagaaataga
     6481 tcatatcagc cagcttaaac acgaagtatt cggaccggtg ctacacgtta tccgttttga
     6541 tgcggataaa ctcgaccaag tgattgccga cataaactcc acaggtttcg gtctaaccag
     6601 cggtttgcat agccgaattg atgaaacggt ggatttatgg ttgaaatctg tccacgctgg
     6661 aaatctgtat gtaaaccgta acacggtagg ggctgtggtc ggcgtacagc cattcggtgg
     6721 aatggggtta tcaggaactg ggccgaaagc tggcgggccg ctctatctac aacgtttagt
     6781 aaaccgccaa gaatggacat tgaacggttt acagggcaat gcacaagcgg tcgattttga
     6841 cttaaatttt gcaatccgca aggttctaag tggagctgag cagcaaacgg cgttagatct
     6901 ggccaaaagc cttgcacgcc gctcgccact cggaaaaacc tacccaatgc agggtattac
     6961 cggcgagaaa aacgagatga ttttcgtggc tcgcccacag attgggatta gcaaaggtaa
     7021 tttggcttca caggtgcaag ccttgattgc cattgtaacg gtcggcagcc aagcggtggc
     7081 agaaaaatca agcgagctgg caaaacacgc ctctgccttt ggtaagaaat tacaggtggt
     7141 ggatgatttc aacagtctcg atcacctcag cacactcatt gtgcttgacc tgctttctag
     7201 tgaggaaaaa ttgcatcatg ccgaacgcaa aggggcgatt ttgacctaca tcgaagggct
     7261 ggatttagcg ctctcactgc tgccgttggt acacgagaaa gcaatcagca tcaacaccgc
     7321 tgccgcaggg ggaaatgcca gcttaatgag tgaaatggat taagcaacaa acaaaagagt
     7381 ataagagggc agatcacaat gatctgcctt tttattttaa ggggctgtcc tagataacga
     7441 ctaaaacttc catttaggtt aagataaccc tatgagaaaa agtcgtctaa gtcagtacaa
     7501 acaacataaa ctcatagagc tgtttgtagc aggcgtaatc gctcgaacag ccgcagagtt
     7561 agtgaatgta aataaaacca ccgcagccta ttattttcac cgtttgcgat tgctcatcta
     7621 tcaacatagc cctcatttgg aaatgtttga gggagaaatt gagattgatg agagctattt
     7681 cggcggtcat cgcaagggta aacgaggtcg tggtgcagca ggcaaaaccg ccgtattcgg
     7741 gcttttaaag cgtgacggca aggtttatac cgtagtagtg ccgaacacac aatctgctac
     7801 acttttgccg attattcggg aaaaggtgaa gcccgatagc cttgtttaca ccgattttta
     7861 tcg
//
LOCUS       DANLVT010000109         7861 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.109, whole genome shotgun sequence.
ACCESSION   DANLVT010000109 DANLVT010000000
VERSION     DANLVT010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7861)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7861)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7861
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.109"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(52..1092)
                     /locus_tag="PXC99_002032"
     CDS             complement(52..1092)
                     /locus_tag="PXC99_002032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5418458.1"
                     /translation="MQTTLSPQQIAKKHRTIEKKRSFLLLFFLLICLLSLIFDIMTGP
                     SLLPFNEVWKALFQLGEIEETTKVIVYELRLPMAIMALVVGAALGVGGAEIQTLLNNP
                     MASPYTLGLAAAAGFGASIVIAFGGFGLPTEISVPVGAFVMTLFSSAILFAFSSLGRF
                     SSAILVLVGIALLFLFQSLLSLVQFISAPEVSQQILFWLFGNLTKATWQTISIAFGVT
                     TVCILLLFKDAWKLTALRLGEARALSLGINLTWLRMKTLLIVSVMTATCISFVGIIGF
                     IGLVAPHIARMLLGEDQRFFLPGSMLVGAAFLSMSSVLSKSLVPGALFPVGIITALVG
                     VQFFFWIVLAKR"
     gene            complement(1181..1771)
                     /locus_tag="PXC99_002033"
     CDS             complement(1181..1771)
                     /locus_tag="PXC99_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein phosphodiesterase"
                     /protein_id="HDL5418459.1"
                     /translation="MNFLTHSLISLEIDTQTKQQTLYGNFAGDFYKGLIPHLNLADNL
                     KSGVVLHRSIDKISDRPDSLTTQLLQGTFGRYKGIVSDIMIDHFLAKHFQRLFAKDLN
                     EVQAQIFQQIEQQRTIFPEQFVPMFNWLQSRKALTHYADLDFLEQVFLGMSSRVKKGE
                     ILRNAVTEIWQNYTLLEEAAIQEFFTVKDRATRELS"
     gene            complement(1772..3145)
                     /gene="modF"
                     /locus_tag="PXC99_002034"
     CDS             complement(1772..3145)
                     /gene="modF"
                     /locus_tag="PXC99_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter ATP-binding protein
                     ModF"
                     /protein_id="HDL5418460.1"
                     /translation="MVVDGNGSGKTTFSLALQGKISLYSGDYGNSFQHIQLLSFEQQQ
                     KMLEQIFKDRNNDSVSPDDFGLTARQVILNGSPKEALCEEYAHKLHIQHLLERPFMHL
                     STGESRKVLFCQMLVSEPDLFILDEPFEGLDQQSVQYWQQLIAELQSKMALVLIVNRF
                     NDIPDAANHIELLDNLSLILQGERAEIEQQAVYSQLKFAEENVNVPLPDSAAPLLSLP
                     ENINPFELENVNIQYGEKKILDNLSWTVQPKQHWWIKGPNGAGKSTLLSIITGDHPQS
                     YANKVRLFGKQRGSGETIWDIKKNIGYVSSQLHMDYRVNCSAMEVILSGFFDSIGVYQ
                     QVPNALQLKAMEWLERLNLSNVAKKPFRSLSWGQQRLLLITRAMVKHPSILILDEPLQ
                     GLDGINRKLVKQFIEQLVTNSQTQLLFVSHQDSDAPNCITHLFEFVPKGETNEFGFEY
                     HQTALGA"
     gene            complement(3263..4216)
                     /gene="fmt"
                     /locus_tag="PXC99_002035"
     CDS             complement(3263..4216)
                     /gene="fmt"
                     /locus_tag="PXC99_002035"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HDL5418461.1"
                     /translation="MSKLNIIFAGTPDFAAQHLQALLDSEHNVIAVYTQPDKPAGRGK
                     KLQASPVKQLAEAHNIPVYQPKSLRKEEAQAELKALNADVMVVVAYGLILPEAVLNAP
                     KYGCLNVHGSLLPRWRGAAPIQRSIWAGDTETGVTIMLMDVGLDTGDMLHKVTTPIEP
                     NETSASLYAKLAELAPLALLEVLNGLANHTFKAEKQDEALSNYAEKLSKEEAKLDWQL
                     PAVQLERNIRAFNPWPFSFLTLTVDGVEQSIKIHQATVLPHQEKAAGTVINVDKTGIQ
                     IATQQGVLNITQLQPAGKKPMSVQDFLNGRADWFVSGTQLS"
     gene            4331..4942
                     /locus_tag="PXC99_002036"
     CDS             4331..4942
                     /locus_tag="PXC99_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HDL5418462.1"
                     /translation="MEFFIPKADTIFEEEIKKSRFITYLRHTEGMEQAKAFWQELKIQ
                     YPHARHWCWATVAGLPNDSQQYGFSDDGEPSGTAGKPMLNYLLGSGLGEITAVVVRYY
                     GGIQLGTGGLVKAYGNGVQQALLQLERIRKVLRKNYRLQCEYEQFNTISHLISEKDIV
                     IVEQLFSDKVDLLLAFNPSEVEAFADELTQRFSGKLALIKEEI"
     gene            4946..6430
                     /locus_tag="PXC99_002037"
     CDS             4946..6430
                     /locus_tag="PXC99_002037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter"
                     /protein_id="HDL5418463.1"
                     /translation="MQFFSIIRIVGILVMCFSFTMLVPATVALIYGDGGGRAFLEAFA
                     LNFMVGTLLWWLCRDNKNELRSREGFLIVVLFWVVLGLLGAVPFIILENPDLNVAESI
                     FESFSGLTTTGATVITGLDSLPKAILFYRQFLQWLGGMGIIVLAVAIIPLLGIGGMQL
                     YRAEMPGPLKEQKMRPRIAETAKALWLIYLSLTILCAVAFWLAGMTVFDAISHSFSTV
                     SIGGFSTHDASIGYFNNAAISYITVFFLLLSACNFALHFAVIDRIRDAQSRKKGGILS
                     RLYWGDYEFRFFLMVQLGLFLVCTLVLVGYGYFDNTSVTIEQALFQSVSISTTAGFTT
                     NDFSQWSSFLPTLLVLSSFIGGCAGSTGGGLKVIRVLLLYLQSKREIHRYIHPNVIQP
                     IKLGNHVLSERVVDGIWAFFSAYFFVFVICWLATIACGMETFDALNAVIASLNNLGPA
                     LGSVSSNFTQVPDSAKLVLTFAMVCGRLEVFTLLVILSPVFWKD"
     gene            6431..6958
                     /gene="hemG"
                     /locus_tag="PXC99_002038"
     CDS             6431..6958
                     /gene="hemG"
                     /locus_tag="PXC99_002038"
                     /EC_number="1.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone-dependent protoporphyrinogen IX
                     dehydrogenase"
                     /protein_id="HDL5418464.1"
                     /translation="MKTLILYFTTDGQTKKIAERLADVITHEVELISLKDQAVDFAEK
                     IANADQIVIGASIRYGHFNPLVYQFVEQHYPALNAKKTAFYGVNLTARKDNRNTPETN
                     TYVRKFLAKVKWKPTHIEVIAGALLYLRYKPFDRLMIRFIMKITKGETDTSKEYEYTD
                     WQQVENFGKLLANQL"
     gene            7090..7485
                     /gene="mscL"
                     /locus_tag="PXC99_002039"
     CDS             7090..7485
                     /gene="mscL"
                     /locus_tag="PXC99_002039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large-conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HDL5418465.1"
                     /translation="MSILKEFREFAVKGNVVDMAVGVIIGGAFGKIVSSLVSDVVMPP
                     IGWLIGGVDFKDLAIEIAPAKEGAEAVMLKYGAFIQNVFDFLIIALAVFGMVKVINSL
                     KKAPVVEEAPAEPTAEEKLLTEIRDLLKK"
     gene            complement(7598..7861)
                     /gene="rpsT"
                     /locus_tag="PXC99_002040"
     CDS             complement(7598..7861)
                     /gene="rpsT"
                     /locus_tag="PXC99_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HDL5418466.1"
                     /translation="MANIKSAKKRAVQSEKRRQHNASQRSMMRTFIKKVYAAVAAGDK
                     AAAQTAFVEMQKVVDRMASKNLIHANKAANHKSKLAAQIKKLA"
BASE COUNT         2161 a         1576 c         1773 g         2351 t
ORIGIN      
        1 taagtttcca cgcttaatag ttacatcgtt taagttgagc atagaaaatc cttatcgttt
       61 cgccaataca atccagaaaa agaactgcac accgactaat gccgtaataa taccgaccgg
      121 aaataatgcg cccggcacaa ggctttttga tagcacggat gacatcgata aaaatgccgc
      181 acccactaac attgaaccgg gcaggaaaaa gcgttggtct tcgcctagca acattcgggc
      241 aatatgcggg gcaactaagc caataaagcc gataatgcct acaaagctaa tgcaggtggc
      301 cgtcattaca gacacaatca gcaatgtttt cattcgtaac caagttaagt taatgcctaa
      361 gctcaatgct cgagcttcgc ccaaacgcaa ggcagttaat ttccacgcat ctttgaataa
      421 taataaaata cagactgtag ttacgccaaa ggcaattgag atagtctgcc aagtagcttt
      481 agttaaatta ccgaatagcc aaaacagaat ttgttgggat acctcaggtg cagaaataaa
      541 ttgcaccaat gacagtaaag actgaaataa aaacaataag gcaattccta ccagcactaa
      601 tattgccgag ctaaaacgtc ctaaagagga aaaggcaaat aaaatggcgg aagaaaatag
      661 tgtcatcaca aaagccccga caggtacaga aatttcggtg ggtaaaccaa atccaccaaa
      721 ggcaatcaca atcgaagcac caaagccggc tgcagctgct aaacccaatg tataagggct
      781 tgccattgga ttattaagca aagtttgaat ttcagctccg ccaacaccaa gtgctgctcc
      841 aaccaccaat gccattattg ccattggtaa gcgtagctca tagacaatca ctttggtggt
      901 ttcttcaatt tcgcctaatt ggaataaggc tttccaaact tcattaaacg gaagcaggga
      961 agggcctgtc ataatatcga aaatgaggct gagtaaacaa atgagtaaga aaaagagtaa
     1021 taaaaaactg cgtttctttt caatagttcg gtgcttttta gctatttgtt ggggagagag
     1081 cgttgtttgc ataaaaatgt aatgtttgag aattattatc agacaggata agagaaaaga
     1141 tcgataaatt caagaatatc caagataccg actaaagtat tcaactaagt tctcgagtag
     1201 ccctgtcttt tacagtaaaa aactcctgaa tagcggcttc ttctaaaaga gtataattct
     1261 gccaaatttc ggttacagca tttcttaaaa tctcaccttt cttaactctt gatgacattc
     1321 ccaagaatac ctgttctaag aaatctaaat cggcataatg agttaatgct tttcgtgact
     1381 gtaaccagtt aaacatcggc acaaattgtt caggaaaaat cgtgcgttgt tgttcgattt
     1441 gctgaaagat ctgtgcttgt acctcattta aatctttagc aaataaccgt tggaaatgtt
     1501 tagcgagaaa atggtcgatc ataatatccg acacaatgcc tttataacgc ccgaatgtgc
     1561 cttggagtaa ttgggttgtg aggctgtccg gtcggtccga aatcttatca atcgagcggt
     1621 gtaacaccac accgcttttt aagttatccg ctaaattgag atgcggaatt aaacctttat
     1681 agaaatcacc ggcaaagttg ccatataggg tctgttgctt ggtttgggtg tcaatttcaa
     1741 gtgaaatcag cgaatgggta agaaaattca tttatgctcc aagtgcagtt tggtgatact
     1801 caaacccaaa ctcgttggtt tcgcctttcg gtacaaactc aaataaatgc gtaatgcaat
     1861 ttggagcatc gctgtcttgg tgcgaaacaa aaagtagttg cgtttggctg ttagtcacta
     1921 attgttcaat gaactgtttg actaatttgc ggttaatgcc gtctaaacct tgtaacggtt
     1981 cgtctagaat cagaattgat gggtgtttca ccattgctcg ggtaatcaaa agtaagcgtt
     2041 gttgccccca cgagagagag cgaaacggct ttttggcaac attgcttaaa ttgaggcgtt
     2101 ccaaccattc cattgctttt aattgcaagg cattcggcac ttgttgatac acgccgatgc
     2161 tgtcaaaaaa gccagaaaga atgacctcca ttgcggagca atttacccga taatccatat
     2221 gcaactggct gctgacatag ccgatatttt tcttaatatc ccaaatggtt tcgccacttc
     2281 cccgttgttt gccaaatagt cggactttat tggcataaga ttgtgggtga tcgccggtga
     2341 taatcgaaag caaggtcgat ttcccagctc cattcgggcc tttaatccac cagtgttgtt
     2401 taggctgaac cgtccaactt aggttatcta aaatcttctt ctccccatat tgaatattca
     2461 cattttccaa ctcaaacgga ttgatgtttt ccggcaggct gagtagcgga gctgcactat
     2521 caggcagtgg cacattgaca ttctcttctg caaattttag ctgagaatag accgcttgtt
     2581 gttcaatttc tgctcgctct ccttgcagaa ttaatgataa attatctaat aactcaatat
     2641 gattggcagc atcaggaata tcgttaaaac gatttacaat cagcactaac gccattttgc
     2701 tttgtagttc ggcaatcagt tgttgccaat attgcaccga ctgctgatcc agcccttcaa
     2761 acggttcgtc taaaatgaat aaatccggct cgctcactaa catttggcaa aatagcactt
     2821 tgcggctttc accggtggaa aggtgcataa acgggcgttc aagcagatgt tgaatatgca
     2881 atttgtgggc atattcctca cataacgcct cttttggact gccatttaaa attacttgtc
     2941 gtgcggttaa gccgaaatca tcgggcgaga cactatcgtt gttccgatct ttgaaaatct
     3001 gctccaacat tttttgttgt tgctcgaaag agaggagctg aatatgttgg aacgaattac
     3061 catagtcgcc ggaatagagc gagattttac cctgtaaagc gagtgaaaaa gttgttttgc
     3121 ctgaaccgtt tccgtctacg accacctaaa agtcattggg ttggatctgt aaggcgtcaa
     3181 tcgtgagttt atgttgttta accagtgaaa atcgggcatt ggttattgta agtgaaggct
     3241 gtgtttgcat atatttcccg ttttaactta gttgtgtccc gctgacgaac caatccgctc
     3301 gaccgtttaa gaaatcttgc accgacattg gttttttacc cgccggttga agttgggtaa
     3361 tattcagcac gccctgttgg gtggcaattt gaatcccggt tttatccaca ttaattaccg
     3421 tgccggctgc tttttcttgg tgaggtaaca ccgtggcttg gtgaattttg atactttgct
     3481 caacgccatc aacggttaag gttaaaaaac taaacggcca agggttaaaa gctcggatat
     3541 tgcgttccag ttgaactgct gggagttgcc aatccaattt agcttcttct ttggaaagtt
     3601 tctcggcgta attggacagt gcttcatctt gtttttccgc tttgaatgtg tggttggcta
     3661 aaccgtttaa cacctcaagc aatgccagag gggcaagttc tgccagtttg gcatacaagg
     3721 aggcggaggt ttcattcggc tcaatcgggg ttgtgacttt atgtaacata tcaccggtgt
     3781 ctaagccaac gtccattagc ataatggtta cgccggtttc tgtatcacct gcccaaatcg
     3841 aacgctgaat cggagctgct ccacgccagc gaggtagtag cgaaccgtgt acgtttaggc
     3901 aaccatattt aggagcattc aatactgctt caggtagaat taagccgtaa gctaccacca
     3961 ccatcacatc ggcatttagg gctttcagtt cagcttgagc ctcttcctta cgcagggatt
     4021 tgggttggta aacaggaatg ttgtgagctt cggccagctg ttttaccggg ctggcttgca
     4081 gttttttgcc tcgcccggca ggtttatccg gctgagtata aaccgcaatc acgttatgct
     4141 cggaatctaa taaggcttgt aaatgttgag cggcaaaatc aggcgtgccg gcaaaaataa
     4201 tattgagttt tgacatattt tttattcgtt caagttatca atgaaagact tattaaacca
     4261 ttaaacagca caaataaaaa gtggcttgaa tatggtatca ttgccacatt caagataaga
     4321 gaatcaaaca atggaatttt ttatccccaa agcggataca atttttgaag aagagattaa
     4381 aaaaagccga tttatcacct accttcgcca tactgagggt atggagcagg ccaaggcatt
     4441 ttggcaggag ctgaaaattc agtatccgca cgcacgccat tggtgttggg caacggtggc
     4501 aggcttgccg aatgattcgc aacaatacgg cttttcggat gatggagaac cgtctggtac
     4561 agcaggtaag ccaatgctca attatttgct tgggtcaggc ttgggggaaa ttacagcggt
     4621 ggtggttcgc tactacggtg gtatccagct tggcaccggc ggcttggtga aagcctatgg
     4681 caatggggtg caacaggcgt tattgcagtt ggagcggatt cgcaaagttt tgcgaaaaaa
     4741 ctaccgcttg caatgtgaat atgagcagtt taataccatt tctcatctca ttagcgagaa
     4801 agatattgtg attgtcgagc aactttttag cgataaagtg gatttgttgc tggcatttaa
     4861 cccgagcgag gttgaggcct ttgcagatga attaacccaa cgcttttcgg gcaagctcgc
     4921 attaataaaa gaagaaatct agtctatgca atttttttcc attattcgta ttgttggcat
     4981 tttggtgatg tgtttttcat tcacaatgct tgtgccggca acggtcgccc taatttatgg
     5041 cgatggcggt gggcgggcgt ttttagaagc cttcgctctg aattttatgg tcggtacgct
     5101 gctttggtgg ctgtgccgtg acaacaaaaa cgagctacgt tcccgtgagg gctttttgat
     5161 tgtagtactg ttttgggtgg tgctgggttt gctcggggct gtgcctttta ttattttgga
     5221 aaaccccgat ttaaacgtgg cggaatccat ttttgaatcc ttttccggct taactacaac
     5281 gggtgcaacc gtcatcaccg gcttagatag cttgcccaaa gcgattttat tctaccgcca
     5341 atttttgcaa tggctagggg gaatggggat cattgtgtta gcggttgcga ttattccgct
     5401 gttaggcatt ggtggaatgc aactttatcg tgcggaaatg cccggaccgc tcaaagagca
     5461 gaaaatgcga cctcgcattg cggaaacggc aaaagcgttg tggctgattt atctcagcct
     5521 gacgattctg tgtgcggtcg cattttggct cgccggaatg acggtgtttg atgccatttc
     5581 gcatagcttt tccacggttt cgattggcgg attttctacc cacgatgcca gcatcggcta
     5641 ttttaataat gcggcaatta gctatattac cgtgtttttc ctgctacttt ctgcctgcaa
     5701 ctttgcattg cattttgcgg tgattgatcg catacgagat gcacaatcac gcaaaaaagg
     5761 gggtatttta agccgcttgt attggggcga ttacgagttt cgttttttct tgatggtgca
     5821 gttagggctt ttcttggttt gtaccttggt gttagtgggt tacggttatt tcgataatac
     5881 ctctgttacg attgagcaag cgttgtttca atcggtgtcc atttccacca cggccggctt
     5941 tactaccaat gattttagcc aatggagttc gtttttaccc acgctgttgg tgctgtcttc
     6001 atttatcggt ggttgtgccg gctcaaccgg tggcggcttg aaagtgattc gggtgttgct
     6061 gctttattta caaagtaaac gtgaaatcca ccgctacatt caccccaatg tgattcaacc
     6121 gattaaatta ggcaaccacg ttttatcgga acgggtggtt gatggtattt gggcgttttt
     6181 ctcggcgtac tttttcgtgt tcgtgatctg ctggcttgct accatcgctt gtggaatgga
     6241 aacctttgat gctctaaatg cggtaattgc ctcactaaat aatctaggtc ctgcattagg
     6301 gagcgtgagc agcaatttca cccaagtgcc ggacagtgcc aagttagtgc tgacttttgc
     6361 aatggtatgc ggacgtctgg aagtgtttac cttgctggtg attttaagcc ctgttttttg
     6421 gaaagattaa atgaaaacct taattctcta ttttacgacc gatggtcaaa ccaaaaaaat
     6481 tgccgaacga ttggcggacg tgattactca cgaagtcgag ctgatttcgc taaaagatca
     6541 agcggtcgat tttgccgaaa aaattgcaaa tgccgaccaa attgtcatcg gtgcttcaat
     6601 tcgctatggg cattttaacc cgttggttta tcagtttgtg gaacagcatt atccggcatt
     6661 aaacgccaag aaaactgcct tttacggtgt gaatttgacc gctcgcaaag ataatcgaaa
     6721 cacgcctgaa accaatactt atgtgcgtaa atttttagct aaagtgaaat ggaaaccaac
     6781 ccacattgag gtaattgctg gggcattact ttacctacgc tataagccat tcgaccgatt
     6841 gatgattcgc tttattatga aaattaccaa aggcgaaacc gatacctcca aagaatatga
     6901 gtacaccgat tggcagcagg tggagaattt tggcaaatta ttagccaatc agttataatc
     6961 aaactgatct aaatcaaaaa aatgtaaatt tatttaaatg ttgtagaaat tttaaagatt
     7021 ttgattataa tcgccagccc acgttcttgc gaagaccgtg tttaatcatt gaatgaaagg
     7081 aaagccccct tgagtatttt aaaagagttc cgtgaatttg cggtaaaagg taatgttgtt
     7141 gatatggctg tcggtgtgat tatcggcggt gcattcggta aaattgtttc ttcattagtt
     7201 agcgatgttg taatgccacc tatcggttgg ttaatcggtg gcgtggattt caaagattta
     7261 gccattgaaa tcgccccggc aaaagaaggt gcggaagcag tgatgttaaa atacggtgca
     7321 tttatccaaa acgtatttga tttcttaatt atcgcacttg cggtattcgg tatggtgaaa
     7381 gtgattaact cactgaaaaa agctccagtt gtagaagaag ctcctgcaga gccaacagcg
     7441 gaagagaaat tattaactga aatccgtgat ttattgaaaa aataattaac tgattttgaa
     7501 acaagggcta ttttagaata tctagaatag ccctttgtgt tatggttaaa aagaaaaaaa
     7561 ccaacataaa gtcggttttt ttcatatctg ttcgatatta cgctaatttt ttgatttgcg
     7621 ctgctaattt agatttgtgg ttagccgctt tgttagcgtg gattaagttt ttagatgcca
     7681 tacggtctac aactttttgc atttcaacga aagccgtttg agctgctgct ttatcgcctg
     7741 ctgctactgc tgcatatact tttttgatga atgtacgcat cattgagcgt tggcttgcgt
     7801 tgtgttggcg gcgtttttca gattgaaccg cacgtttttt tgctgacttg atattagcca
     7861 a
//
LOCUS       DANLVT010000110         7759 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.110, whole genome shotgun sequence.
ACCESSION   DANLVT010000110 DANLVT010000000
VERSION     DANLVT010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7759)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7759)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7759
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.110"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            301..801
                     /locus_tag="PXC99_002041"
     CDS             301..801
                     /locus_tag="PXC99_002041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HDL5418467.1"
                     /translation="MQTINEIKEEIYPIFEPIIGTIRLKTYFSYYAVFKDGLMIALYQ
                     NGATYLRIAKKDIEYIRQYPKTCILCDEKIGIQSRKFHYIPQVLIDDTPKFSSLLFGI
                     IEELRTEKYKISQKRATQIRNLPNMNLKLERMLKKIGIHSIHDFTQEGYMSTFIKLIL
                     HRRLTV"
     gene            1089..2483
                     /gene="fumC"
                     /locus_tag="PXC99_002042"
     CDS             1089..2483
                     /gene="fumC"
                     /locus_tag="PXC99_002042"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005567406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HDL5418468.1"
                     /translation="MEFRIEKDTMGEVQVPADKYWAAQTERSRNNFKIGPEASMPAEI
                     IEAFGYLKKAAAYANHDLGVLAVEKRDLIAKACDEILANKLDDQFPLVIWQTGSGTQS
                     NMNVNEVVANRAHVLNGGKLGEKSIIHPNDDVNKSQSSNDTYPTAMHIAAYKKVVEHT
                     LPCVKRLQKTLAEKAEAFKDVVKIGRTHLMDATPLTLGQEFSAYAAQLAFGIKALENT
                     LPHLRELALGGTAVGTGLNTPQGYDVKVAEYIAKFTGLPFVTAQNKFEALATHDAIVE
                     THGALKQLAVSLYKIANDVRLLASGPRSGIGEILIPENEPGSSIMPGKVNPTQCEAMT
                     MVCAQVLGNDVTISFAGTQGHFQLNVYKPVMAYNFLQSAQLLGDACVSFDEHCAVGIE
                     PNYPRIKQQLDQSLMLVTALNTHIGYENAAKIAKTAHKNGTTLKEEAINLGLVTAEQF
                     DEWVRPEDMVGSLK"
     gene            2610..2720
                     /locus_tag="PXC99_002043"
     CDS             2610..2720
                     /locus_tag="PXC99_002043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005696979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDL5418469.1"
                     /translation="MKKLILIALVTTLGLSACGVKGPLYFPEQAPKHEQK"
     gene            2825..4075
                     /gene="lysA"
                     /locus_tag="PXC99_002044"
     CDS             2825..4075
                     /gene="lysA"
                     /locus_tag="PXC99_002044"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HDL5418470.1"
                     /translation="MNHFEYKNNQLFAEEVAIADIIEQYGTPAYVYSRSTLERHWHAF
                     NNAFGSHPHLVCFAVKSNSNIALLNVMARLGSGFDIVSQGELERVLAAGGEASKVVFS
                     GVAKSHSEIKRALEVGIRCFNIESVSELHRINQVAGELGKIAPISLRVNPDVDAHTHP
                     YISTGLKENKFGVSVTQAREVYRLAKTLPNVKITGMDCHIGSQLTELQPFLDATDRLI
                     ILMEQLREDGIELHHLDLGGGLGVPYNGEEPPHPTEYAKALLEKLKGYENLEIIIEPG
                     RAITANAGILVTKVEYLKQNEDRNFAIVDTGMNDMIRPALYEAYMQITEVDKTLNRDK
                     AVYDVVGPICETSDFLGKQRELAISEGDLIAIRSAGAYGAAMSSTYNSRPQAAEIMVD
                     GNQAHLIKARATFADLWRLEKLLP"
     gene            4089..4718
                     /locus_tag="PXC99_002045"
     CDS             4089..4718
                     /locus_tag="PXC99_002045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HDL5418471.1"
                     /translation="MKLYGLTGACSFVPHVALEWVKLRANQDYAFQAVSREFIKSAEY
                     LALNPRGNVPLLVDGDLALTQNQAIVHYLDELYPEAKLFGSKTARDKAKAARWLAFFN
                     SDVHKSFVPLFRLPSYAEGNETLTKTIRQQSAEQILEQLAFANAHLENHIFFGEEISV
                     ADAYLYIMLNWCRLLGLDFSHLSQLSAFMQRVEADQGVDNVREQEGLKG"
     gene            4789..6234
                     /gene="tldD"
                     /locus_tag="PXC99_002046"
     CDS             4789..6234
                     /gene="tldD"
                     /locus_tag="PXC99_002046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HDL5418472.1"
                     /translation="MLNQVSNSLLDPSGLELSHLTQVLDHFSGRHIDYADLYFQLSQD
                     ESWSLEDSIIKEGGFYIDRGFGVRAISGEKTGFAYADQITLKQLEQCAAAARSISPTS
                     GQLSVKNFKKTTACSRYPAINPLETISREQKVELLHLVDKTARMADPRVIQVNANLSA
                     VYEEMLVAATDGTLAADIRPLVRLSVSVLVEQNGKRERGSAGAGGRFGLDWFLAPSET
                     GFSRAESLTKEAVRQALVNLTAIPAPAGTMPIVLGAGWPGILLHEAVGHGLEGDFNRK
                     ESSLFSGKIGQMVTSELCTIVDDGTVPNMRGSITVDDEGVPSQRNVLIENGILKGYMQ
                     DKLNARLMGVAPTGNGRRESYAHLPMPRMTNTYLTEGNHEFEEMIESVEYGLYAPHFS
                     GGQVDITSGKFVFSTAEAYLIEKGKITKPVTGATLIGSGIEAMQQVSMVGKKMELDPG
                     IGTCGKEGQSVPVGVGQPTVKLDKITVGGRG"
     gene            6298..7179
                     /gene="prmA"
                     /locus_tag="PXC99_002047"
     CDS             6298..7179
                     /gene="prmA"
                     /locus_tag="PXC99_002047"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HDL5418473.1"
                     /translation="MAWVQIRLNSTDKQAEEISDFLTEIGAVSVTFMDSQDTPIFEPL
                     PGETRLWGNTDVVGLFDAETDMNLIVEALKTSKLVDENFAHKIEQIEDKDWEREWMDN
                     FHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLEGK
                     TVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASQNNAEANGVAEKLQLFLAKDQ
                     PRELQADVVVANILAGPLKELAPNIITLVKPNGNLGLSGILATQAESVCEAYSEAFTL
                     DPVVEKEEWCRITGRKI"
     gene            complement(7354..7429)
                     /locus_tag="PXC99_002048"
     tRNA            complement(7354..7429)
                     /locus_tag="PXC99_002048"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7394..7396),aa:Trp,seq:cca)
     gene            complement(7495..7571)
                     /locus_tag="PXC99_002049"
     tRNA            complement(7495..7571)
                     /locus_tag="PXC99_002049"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7535..7537),aa:Asp,seq:gtc)
     gene            complement(7582..7697)
                     /gene="rrf"
                     /locus_tag="PXC99_002050"
     rRNA            complement(7582..7697)
                     /gene="rrf"
                     /locus_tag="PXC99_002050"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT         2329 a         1709 c         1676 g         2045 t
ORIGIN      
        1 ataaatgatt acatcaaatg tctttagata cctaaagctt tgctatcata ctcgtttcat
       61 ttcccttatg caagtaattt ttgtttttta tattgacaat aatttgattc gataaaactt
      121 ctaaagatac acaatatttc caatacttca tttgaagtgg ctcaaataaa ttgtatttat
      181 gcattttttt attcaaactt ttcgagccac ttcacaaatc taaaaaatcc tagttgaaat
      241 ttaatccata agagtattta ttattaaata agtttcatga ccttacatcg gagtacatat
      301 atgcaaacaa tcaatgaaat taaagaagaa atctacccta tatttgagcc tatcattgga
      361 acaattcggc taaaaaccta cttttcctac tacgcagttt ttaaggatgg attgatgatt
      421 gcattgtatc aaaatggagc aacttattta cgtattgcga aaaaagatat tgaatacatt
      481 cgtcagtatc ctaaaacctg tatcttatgc gatgaaaaaa ttggtataca aagtagaaaa
      541 tttcattata ttccgcaagt tctcatagat gatacaccaa aatttagctc gctactcttt
      601 ggaattatag aggaactccg aacggagaag tacaaaataa gccaaaagcg agctacacaa
      661 atccgaaacc taccaaatat gaatttaaag ttagaaagaa tgttgaaaaa aatagggatt
      721 cattccattc atgattttac tcaagaaggg tatatgtcaa cttttatcaa actgattctc
      781 caccgaagac ttactgttta agctaaacgg agctttaaat caccaatata tttacacctt
      841 cacagatcaa caaaaaaggg aactaatgca agaagcaaat caagcgctat ataattcagg
      901 cctaagaaaa agatttaacg ccctgtagtt aaataatgtg atccaaatca taaaatataa
      961 aaaaaccaat aaggaattgc aattcgcagt tcctttcttt ttcttttata tgctagtatc
     1021 accttatacc tctaaattat tagtgcctac tgattttcaa ttaatccaac aatttaggag
     1081 agcgcatcat ggaattccgt atcgaaaaag acacaatggg cgaagtgcaa gttcctgccg
     1141 ataaatactg ggcggcgcaa accgagcgtt cacgcaataa cttcaaaatc gggccggagg
     1201 catcaatgcc ggcggaaatt atcgaggcgt ttggctatct gaaaaaagcg gctgcctatg
     1261 ctaatcacga tttaggcgta ctagcggtcg aaaaacggga tttaattgca aaagcctgtg
     1321 atgaaatttt ggcgaacaaa ctcgatgatc aattcccgct ggtgatttgg caaaccggct
     1381 cgggtacgca gtcaaatatg aacgtgaatg aagtcgtggc aaaccgtgca cacgtgttaa
     1441 acggcggcaa gctgggtgaa aaatcgatta ttcacccgaa tgatgatgtg aataaatccc
     1501 aatcttctaa cgacacctac ccaactgcaa tgcacatcgc tgcttacaaa aaagtggtgg
     1561 aacacaccct accttgtgtg aaacgtctgc aaaaaacctt agcggaaaaa gccgaagcct
     1621 ttaaagatgt ggtcaaaata gggcgtactc acttaatgga tgctaccccg ctcacgctcg
     1681 gtcaagagtt ctctgcctat gcagcacagt tagcattcgg catcaaagca ttggaaaaca
     1741 ccctgccaca cctgcgtgag ctggcactcg gcggcacagc agtcggcacc ggcttgaata
     1801 ccccgcaagg ttacgatgtg aaagtggcgg aatacattgc gaaattcacc ggtttaccgt
     1861 tcgttaccgc ccaaaacaaa tttgaggcat tagcgactca cgatgcgatt gtcgaaaccc
     1921 acggtgcatt aaaacagctt gcggtgtcgc tctacaaaat tgccaacgat gtccgtttat
     1981 tagcctccgg tcctcgttca ggcattggcg aaattctgat tccggaaaac gagccgggtt
     2041 catcaattat gccgggtaaa gtaaacccaa cccaatgcga agcaatgaca atggtatgtg
     2101 cccaagtatt aggcaacgat gtaaccatct cttttgccgg cacgcaaggg catttccaac
     2161 tgaatgtcta taaaccggtg atggcgtaca acttcctgca atcggctcaa ctgctaggcg
     2221 atgcgtgcgt gtcgtttgac gaacactgtg cagtcggcat tgaaccgaac taccctcgca
     2281 ttaaacaaca gctcgaccaa tcgctgatgt tagtgaccgc attaaatact cacattggtt
     2341 atgaaaatgc agcgaaaatc gccaaaactg cccacaaaaa cggcacaaca ctgaaagaag
     2401 aggcgattaa cttaggctta gtcacggcag aacagttcga tgaatgggtt cgtccggaag
     2461 atatggttgg cagcttgaaa taagcccaac ccttctcttg taatctgatt tacacctcaa
     2521 tctaccggta agattgaggt gtaatttttt atagcgaggg tactgatttt gttttagaat
     2581 gaagcatcat tttttaagcg gaaaaaccta tgaaaaaact cattttaatc gcattagtta
     2641 ctactttagg cttaagtgct tgtggggtca aaggcccact ctacttccct gagcaagccc
     2701 ctaaacatga acaaaaataa gcattgcaag cggtctgttt tggctaaaat tttgcaaatt
     2761 tttgtgaaaa aatgaccgct tgttgcctct tttctttcaa aatcccaaac acaacggact
     2821 ttcaatgaac cattttgaat ataaaaacaa ccaacttttt gctgaagaag tcgctattgc
     2881 cgatattatc gagcaatacg gcacgccagc ttatgtttac tccagatcta cccttgaacg
     2941 ccactggcac gcattcaata atgcgtttgg ctcgcaccca catttagttt gctttgcagt
     3001 caaatccaac tctaacattg ccttgttaaa tgtaatggct cgtctcggtt caggctttga
     3061 tattgtctct caaggcgagt tggagcgtgt cttagctgcc ggcggcgaag cctctaaagt
     3121 tgtcttttcc ggtgtggcaa aatcgcacag cgaaatcaaa cgagcattgg aagtcgggat
     3181 tcgttgcttt aacattgaat cggtttccga acttcaccgc attaaccaag ttgccggtga
     3241 actaggcaaa atcgcaccga tttcactgcg ggtaaacccg gatgtggacg cccacactca
     3301 cccatacatt tccaccggtt taaaagaaaa caaattcggc gtgagcgtta ctcaagcccg
     3361 tgaagtgtat cgcttagcca aaaccttacc gaatgtgaaa attaccggta tggattgtca
     3421 catcggttcg caattaaccg aattgcaacc ttttttagat gcaacggatc gcttaatcat
     3481 cttaatggag caactgcgtg aagacggcat tgagctacac cacttagact taggtggcgg
     3541 tttaggcgtg ccttacaacg gcgaagagcc tccgcatccg accgaatatg ccaaagcctt
     3601 gctggaaaag ctcaaaggct atgaaaactt agaaatcatt attgaaccgg ggcgtgccat
     3661 taccgcaaat gccggtattt tagtgacgaa ggtggaatac ttgaaacaaa atgaagatcg
     3721 taattttgcg attgtcgata ccggtatgaa cgatatgatt cgcccggctc tgtatgaagc
     3781 ctatatgcaa attacggaag tggataaaac cttaaaccgt gacaaagctg tttacgatgt
     3841 ggtcggtccg atttgcgaaa cctcggattt cttaggcaaa caaagagaat tggcaatttc
     3901 tgaaggggat ttaatcgcta ttcgttctgc cggtgcttat ggggcggcga tgtcttcaac
     3961 ctacaactct cgcccacaag cggcagaaat tatggttgat ggcaaccaag cccatttaat
     4021 taaagcccga gccacttttg ctgatttatg gcgtttagaa aaattattac cttaatgagg
     4081 aagaaaagat gaaattatat ggattaaccg gtgcttgttc atttgtacca cacgttgccc
     4141 tagagtgggt gaaattgcgt gccaatcaag attatgcgtt tcaagctgtt agccgtgaat
     4201 ttattaaatc ggcggaatat ctggctttaa accctcgtgg taacgtacca ttgttggttg
     4261 atggcgactt ggccctcacg caaaaccaag ctatcgtcca ctatttagac gagctttatc
     4321 cggaagctaa attattcggc agcaaaaccg ctcgtgataa agccaaagcg gctcgttggt
     4381 tagctttttt caattcagat gtgcataaat cattcgtgcc actgttccgc ttgccaagtt
     4441 atgcggaagg caatgaaacg ctcaccaaaa ctattcgcca acaatcggct gagcaaattt
     4501 tagaacaact ggcttttgcg aatgctcatt tagaaaatca tattttcttt ggcgaagaaa
     4561 tttcggttgc cgatgcgtat ctctacatta tgctcaactg gtgtcgccta ctagggttgg
     4621 atttctctca tctttcccaa ctttctgcct ttatgcaacg agtggaggca gaccaaggcg
     4681 tagataatgt gcgtgagcaa gaaggcttaa aaggttaatt caccattgtt catttaagac
     4741 ggtagatttt atgttaaaat ctaccgtctt ttatttttag gaatcaccat gctaaatcag
     4801 gtttcaaaca gcttgcttga tccaagtggg cttgaattat cgcacttaac tcaagtgtta
     4861 gatcacttct ccggccgtca tattgattat gccgatctct acttccaact cagccaagac
     4921 gaaagctgga gcttggaaga cagcatcatc aaagaaggcg gtttttatat cgaccgaggg
     4981 ttcggtgtgc gagccatatc aggcgaaaaa accggctttg cctacgccga tcaaatcacg
     5041 ttaaaacagc ttgagcaatg tgccgctgcc gcacgttcaa tcagcccaac aagcggtcaa
     5101 ttatcggtaa aaaatttcaa aaaaacgacc gcttgttctc gctacccggc aatcaacccg
     5161 ctagagacca tcagccgtga acaaaaggtc gaattgctcc atttggtgga taaaaccgct
     5221 cgaatggcag atccgagagt gattcaagtg aatgcgaatc tctcagcggt atatgaagaa
     5281 atgttagtgg cagcgactga cggcacactg gctgcggata ttcgcccgtt agtgcgttta
     5341 tctgtgtcgg tactggtgga acaaaatggc aagcgtgaac gaggttcagc aggtgccggt
     5401 ggtcgctttg gtttagattg gttcttagca ccaagcgaaa ccggctttag ccgtgcggaa
     5461 tcgcttacca aagaagccgt tcgccaagcc ctcgttaatc tcacagccat tcctgcaccg
     5521 gcaggcacga tgccgattgt tctcggtgct ggctggccgg gcattttgct ccacgaagca
     5581 gtcggacacg gcttggaggg tgattttaac cgtaaggaat cttcgctctt cagtggtaaa
     5641 atcgggcaaa tggtcacctc tgagctttgc accattgttg atgacggtac ggtgccgaat
     5701 atgcgaggct caatcacggt agatgacgaa ggcgtgcctt cgcaacgtaa tgtgttaatt
     5761 gaaaacggca ttctaaaagg ctatatgcaa gacaaactca atgcccgcct gatgggagtt
     5821 gccccaaccg gcaacggcag acgggaatct tacgctcatt tgccgatgcc acgaatgacc
     5881 aacacctacc tcaccgaagg caatcacgaa tttgaagaga tgattgaatc ggtcgaatac
     5941 ggtttatatg ctcctcactt cagtggtgga caagtggata ttacctccgg caaatttgtg
     6001 ttctccaccg ccgaagccta cttaatcgaa aaaggcaaaa tcaccaaacc tgttaccggt
     6061 gcaaccctga tcggcagcgg catagaagca atgcaacaag tttcaatggt cggcaaaaaa
     6121 atggaactcg accccggcat cggcacttgt ggcaaagaag ggcaatccgt accagtcggc
     6181 gtagggcagc ctacagtgaa gttggataaa attacggtgg ggggaagagg gtaatctctc
     6241 cccgtttgca aaatataaag aaaatatcac cgcttgtagc gataaaagga aaacaaaatg
     6301 gcttgggtac aaattcgttt aaacagtaca gataaacagg ctgaggaaat cagcgatttt
     6361 ttaaccgaga ttggagcggt gtcagtgact tttatggata gtcaagatac cccaattttt
     6421 gaacctcttc cgggggaaac ccgtctttgg ggaaataccg atgtggttgg gcttttcgat
     6481 gcggaaactg atatgaatct tatcgtagaa gcactaaaaa ccagcaaatt ggtggacgaa
     6541 aactttgctc acaaaatcga gcaaatcgaa gacaaagact gggaacggga gtggatggat
     6601 aatttccacc caatgcagtt tggcaaacgg ttatggatct gcccaagctg gcgtgaagta
     6661 ccagacccga atgcagtgaa tgttatgtta gaccctggtt tagcatttgg caccggcaca
     6721 cacccaacga cctcgctttg cttacaatgg ttagatagct tagatttaga aggcaaaacg
     6781 gttatcgact tcggctgtgg ctccggtatt ttagctatcg ctgcacttaa actcggtgca
     6841 aaacaagcca tcgggattga tatcgaccca caggcgattt tagctagtca aaacaatgct
     6901 gaggcgaacg gcgtagcaga aaaactacaa ctattcttag ccaaagatca gccaagagag
     6961 ttacaagccg atgtcgttgt tgcgaatatt ctagccggcc cactcaaaga gttagcaccg
     7021 aatatcatca cgctggttaa accaaacggc aatttaggct tatccggcat tcttgctact
     7081 caggctgaaa gtgtgtgtga ggcttatagc gaagccttta cgctagaccc tgttgtagaa
     7141 aaagaagaat ggtgtcgtat tacaggccgc aaaatctaat ataagaagcc ctgttttaaa
     7201 cagggcttac tttttgataa attctactac tctttacctg tcttgggaat cgttctccct
     7261 aaattaatta acacaagcgg tagaaataac aggaaaattt acaaattaca taaatgaaaa
     7321 aagccgactg aaatcagtcg gctttctaaa taatggcagg ggcggagagg ctcgaactcc
     7381 caacacccgg ttttggagac cggtgctcta ccaattgaac tacgccccta ttgataggta
     7441 ttcattttgc acttataggg gcgaattact attcgcccct gcattaaaga ttattggcgg
     7501 aacggacggg actcgaaccc gcgaccccct gcgtgacagg caggtattct aaccagctga
     7561 actaccgctc ctaaattaat agattgataa tgccctactc tcacatggcg aatcaccaca
     7621 ctaccatcgg cgttactgcg ttttacttct gagttcggta tggagtcagg tagagccaca
     7681 gcactctggt tatcaatcaa attctttcat ttagtcagtt tactaaaata tagtttatac
     7741 tttctaataa actcactaa
//
LOCUS       DANLVT010000111         7724 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.111, whole genome shotgun sequence.
ACCESSION   DANLVT010000111 DANLVT010000000
VERSION     DANLVT010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7724)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7724)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7724
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.111"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            46..3117
                     /gene="fdnG"
                     /locus_tag="PXC99_002051"
     CDS             46..3117
                     /gene="fdnG"
                     /locus_tag="PXC99_002051"
                     /EC_number="1.17.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:631..633,aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit alpha"
                     /protein_id="HDL5418474.1"
                     /translation="MQISRRKFFKVCAGGMAGTSAAMLGFAPATALAAPREYKLLRAK
                     ETRQTCTYCAVGCGMIMYSLGGEAMNSKGKLIHIEGDSDHPVSRGALCPKGAGALDYV
                     NSDRRVHYPEVREAGSSEWKRISWHEAIERIARHMKNDRDENFVTHNEAGLEVNRWMT
                     AGFLAGSACSNETGIVTQKFIRSLGMIFTDNQASIUHGPTVASLAPSFGRGAMTNHWV
                     DIKNSDLVIVMGGNAAEAHPVGFRWAVEAKKQNGAKLMVVDPRFNRSAAVADIYIPLR
                     PGTDIAFLLGAVNYLLKNDKIQHEYVKHYTNATFLLNEGFKFEDGLFTGYDEATRTYK
                     DKSTWAYQLDEQGQPKRDMTMQDPRCVINMLKDHVSRYTPEMVERITGTPQKDFLIFC
                     EEIAKTSAPDKAATFLYALGWTQHTVGAQNIRSMAIIQLLCGNIGVSGGGVNALRGHS
                     NVQGITDLGLFPHMLPGYIRLPTEADATLESYLNAIAPKTLVAGQVNYGQNNPKFAVS
                     MLKTFYGDKATKENEFGYHYLPKYPKGGTDHFRFIEQMYQGKVNGYFCQGMNPIASYP
                     NSQKLIKALSNLKYLVIFDPLITDTSEFWKNHGEFNNVNPSEIQTEVFRLPTTCFAEE
                     DGSIANSGRWLQWHWKAADAPHEAKPDVDILSEIRAELIHLYHKEGGKAPLEPLEAMT
                     WNYMNPLEPKPEEIAKENNGYALEDLKDADGNIIVKKGELLSSFTQMRDDGTTSGGCW
                     IYCGQWTPKGNQMANRDNSDPSGLGNTLGWAFSWPVNRRILYNRASADLSGKPWNPKR
                     QLVKWNGKNWNYVDVADYGTAPPNSPVTPFIMQPEGVSGLFVRERMQDGPFPEHYEPF
                     ETPIGTNPLHPNVISSPVARILPSDKEDLGTSDEFPYVGTTYRLTEHFHYWTKNALIN
                     VIAQPEQFVEIGEKLAEEKGIKNGDKVRVWSKRGEIKAVAVVTKRIRSLVSDGKPIHT
                     IGVPIHWGFAATTGAKKGYFANNLTVRTGEPNSNTPESKCMLLNIEKIVGA"
     gene            3120..4034
                     /gene="fdxH"
                     /locus_tag="PXC99_002052"
     CDS             3120..4034
                     /gene="fdxH"
                     /locus_tag="PXC99_002052"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit beta"
                     /protein_id="HDL5418475.1"
                     /translation="MSTVQTQNIIKISATSALTPAPQARSHQVEVAKLIDVTTCIGCK
                     ACQVGCSEWNDIRSDVNANCVGVYDNPADLNAKAWTVMRFNEVEENDRLEWLIRKDGC
                     MHCAEPGCLKSCPSPGAIIQYANGIVDFQSDKCIGCGYCIAGCPFNIPRMNPDDNRVY
                     KCTLCVDRVNVGQEPACVKTCPTGAIRFGSKEEMKFYAEQRIADLKSRGYENAGLYDP
                     EGVGGTHVMYVLHHADKPELYSGLPKDPKIDTTVTLWKDVLKPVAAVALGGLALAEVA
                     HYITVGPNVEEDLEEHHHSENAEGGKHE"
     gene            4027..4704
                     /locus_tag="PXC99_002053"
     CDS             4027..4704
                     /locus_tag="PXC99_002053"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HDL5418476.1"
                     /translation="MSKKFEITNDTKIVRHKPLARVSHWFLVISFFMTMFTGVAFFFP
                     DFAWLTEILGTPQIARAVHPFTGIIMFIAFIIMALIYWHHNIPEKNDIRWAKGIVEVL
                     KGNEHKVSDNGKYNLGQKLLFWTLILAMFTLLATGIIMWRQFFSHYFSIPMLRIAILL
                     HSASAFMLFTGILVHMYMAFWVKGSIRGMVEGWVTVRWAKKHHPRWYREEVLPELERQ
                     VAEQNNK"
     gene            4760..5677
                     /gene="fdhE"
                     /locus_tag="PXC99_002054"
     CDS             4760..5677
                     /gene="fdhE"
                     /locus_tag="PXC99_002054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory protein FdhE"
                     /protein_id="HDL5418477.1"
                     /translation="MSIKILPQDDIKQAASSFQQPELLFANPKNLYLRRAKRLRELAK
                     QNPFGEYMEFSANLVDIQLALLESQPIADYSQKITACVERTQGETPLNAQNFQRTDEW
                     RTLLLAIIEKFKPYANDTVLATIEVLEKAAKSELDTLADNLLNERYELVGADKAVFIW
                     AALSLYWVQLAQQLPRNSRAEIGHKHLCPVCNSAPVSSVIHFGEAQGLRYLHCSLCES
                     EWHVVRTKCTNCDETGKLDYWSLDTVEAAVKAESCGDCHSYLKVLYQDKDVNVEPVAD
                     DLATLFLDSEMEQKGLSRSGINPFLFQVE"
     gene            complement(5747..6133)
                     /locus_tag="PXC99_002055"
     CDS             complement(5747..6133)
                     /locus_tag="PXC99_002055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418478.1"
                     /translation="MLRNFMIMLHFIYGFAMKNAFSFFVISLFLTMNSISYASNPIPS
                     NKEKLNGVKKQQDKPKFRISERKVLKNKEKDEEVSNFSMEELRVGAQRPLDDSVIQYF
                     KSQCRYAFMSDREIIANRCEVKKIAD"
     gene            complement(6144..7514)
                     /gene="gorA"
                     /locus_tag="PXC99_002056"
     CDS             complement(6144..7514)
                     /gene="gorA"
                     /locus_tag="PXC99_002056"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009499791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HDL5418479.1"
                     /translation="MAKHYDYIAIGGGSGGIASINRAASYGQKCAIIEAKHLGGTCVN
                     VGCVPKKVMFYGAQVAEAINHYAPDYGFDITVNNFDYAKLVESRQAYIGRIHTSYGNV
                     LAKNNVDVLNGFARFKDAKTLEVSYADGSVEEVTADHILIATGGRPTVPNVKGAEYGI
                     TSDGVFALDALPKSVAIVGAGYIAVELAGVFNSLGVNTHLFVRQHAPMRNQDPLIVDT
                     LLEVLAQDGIELHTQATPQEVVKNADGSLTLKLQDGRETSVESLVWAIGREPATDKIN
                     LEAAGVETNERGFIKVDKFQNTNVPNIYAVGDIIEGGIELTPVAVAAGRRLSERLFNN
                     KPNEHLDYSLVPTVVFSHPPIGTVGLSEPKAIEQYGAENVKVYKSSFTAMYTAVTQHR
                     QPCRMKLVCVGEGEKVVGLHGIGFGVDEMIQGFAVAIKMGATKADFDNTVAIHPTGSE
                     EFVTMR"
     gene            complement(7591..>7724)
                     /locus_tag="PXC99_002057"
     CDS             complement(7591..>7724)
                     /locus_tag="PXC99_002057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TIGR00645 family protein"
                     /protein_id="HDL5418480.1"
                     /translation="FINASNLDEKQMMWQVVIHLAFIVSALAMAYIDKMLNSGHMKH"
BASE COUNT         2308 a         1697 c         1627 g         2092 t
ORIGIN      
        1 atcaaatttt gttttatttc tcacattatg tgatttggag tgattatgca gatctcaaga
       61 cgtaagttct tcaaggtctg tgcaggtggt atggcgggaa cttctgctgc aatgttgggt
      121 tttgctccag caacagcatt agctgcaccg cgtgagtata agctcttaag agcaaaagaa
      181 actcgacaaa cctgtactta ctgcgcggta ggctgtggca tgattatgta cagcttaggc
      241 ggcgaagcaa tgaacagcaa aggaaagtta attcatattg agggtgattc tgaccatcca
      301 gtaagccgtg gggcgttatg tccgaaaggt gcaggggcgt tggactatgt taatagtgac
      361 cgccgtgtgc attatccgga agtgcgtgaa gccggttcaa gtgagtggaa acgcatttct
      421 tggcacgagg caattgaacg tattgcccgc catatgaaaa atgaccgtga tgagaacttc
      481 gtcacccaca atgaagcagg gctggaagta aaccgttgga tgacggcagg tttcttggca
      541 ggctcggcgt gtagtaacga aaccggtatc gtcacccaga agtttatccg ctctctcggt
      601 atgattttta ccgacaacca agcgagtatc tgacacggac caacggtagc aagtcttgct
      661 ccatcatttg gtcgcggtgc gatgaccaac cactgggttg atattaaaaa ctccgattta
      721 gtgatcgtta tgggcggtaa cgcagccgaa gctcaccctg tgggtttccg ttgggcagtt
      781 gaagcgaaaa aacagaacgg tgcgaagtta atggtggtag atccacgctt taaccgtagt
      841 gctgcggtgg cggatattta tataccattg cgtccgggta cggacattgc gttcttgtta
      901 ggtgcggtaa actacctgct taaaaacgac aaaattcaac acgagtatgt gaagcattac
      961 accaatgcca cattcttact caacgaaggg tttaaattcg aagacgggct tttcaccggc
     1021 tacgatgaag ccactcgtac ctataaagac aaatccactt gggcttatca gttagatgaa
     1081 cagggtcagc cgaaacggga tatgacaatg caagatccac gttgtgtgat caatatgctc
     1141 aaagaccacg tttcccgcta tacgcctgaa atggtagaac gcattaccgg tacgccacaa
     1201 aaagatttcc tgattttctg tgaagagatt gcgaaaacct cagcgccgga taaagccgcc
     1261 accttcctct atgccttagg ttggacacaa cacaccgtgg gcgcacaaaa cattcgctca
     1321 atggcgatca ttcagttgct gtgcggtaac attggtgtct ccggcggtgg ggtaaacgca
     1381 ctgcgtggtc actctaatgt acaagggatt accgacctag gcttgttccc acatatgttg
     1441 ccgggctata tccgcctgcc aaccgaagcg gacgcaacct tagaaagcta cttaaatgcg
     1501 attgcaccga aaaccttagt ggcagggcaa gtaaactacg ggcaaaacaa cccgaaattc
     1561 gctgtgagta tgctcaaaac cttctacggc gataaggcaa ccaaagagaa cgagttcggc
     1621 tatcactatt taccgaaata cccgaaaggc ggtacagatc acttccgctt tatcgaacag
     1681 atgtatcaag gcaaagtgaa cggctatttc tgccaaggta tgaacccgat tgcctcttac
     1741 cctaactcgc agaagttaat taaagcgttg agcaatttga aatatttagt catttttgac
     1801 ccgcttatta ccgatacttc cgagttctgg aaaaatcacg gtgagttcaa caatgtgaac
     1861 ccgtctgaaa ttcaaaccga agtgttccgc ttgccgacca cttgctttgc ggaagaagat
     1921 ggttcaattg cgaactccgg tcgctggtta caatggcact ggaaagcagc agacgcacca
     1981 cacgaggcaa aaccggacgt ggatattctg tctgaaatcc gtgccgaact gatccacctt
     2041 tatcataaag aaggcggaaa agcaccgctt gaaccgttag aagcgatgac gtggaactat
     2101 atgaacccgt tagaaccgaa gccggaagag atcgccaaag agaacaacgg ttatgcattg
     2161 gaagatctga aagatgcaga cggcaacatc atcgtgaaaa aaggcgaact attatccagc
     2221 tttacacaaa tgcgtgatga cggtacaacc tccggtggtt gttggatcta ctgcggtcaa
     2281 tggactccga aaggtaacca aatggcgaac cgtgataact ccgacccatc aggcttaggt
     2341 aacaccttag gctgggcatt ctcgtggccg gtaaaccgcc gtattctata caaccgtgca
     2401 tcggcagatt taagcggtaa accgtggaac ccgaaacgcc agctagttaa atggaacggt
     2461 aaaaactgga actatgtgga cgttgccgat tacggtacag caccaccaaa tagccctgtg
     2521 acaccattta ttatgcaacc ggaaggggta tccggcttgt tcgtgcgtga acgtatgcaa
     2581 gacggtccat tccctgagca ttatgaaccg tttgaaacgc caatcggcac gaacccgtta
     2641 cacccgaatg taatcagcag tccggtggca cgcattctgc cgagcgataa agaggattta
     2701 ggcaccagcg atgagttccc atatgtcggt acaacttacc gcttaaccga acacttccac
     2761 tactggacga aaaatgccct gattaacgtc attgctcaac cggagcaatt cgtggaaatc
     2821 ggcgagaaac ttgccgaaga gaaaggcatt aaaaatggcg acaaagtacg tgtttggtct
     2881 aaacgtggcg aaattaaagc cgttgccgtg gtgactaaac gtatccgttc attggtctct
     2941 gacggcaaac caatccacac tatcggtgtg ccgatccact ggggctttgc ggctacaacc
     3001 ggtgcgaaaa aaggctattt tgccaataac ttaaccgtgc gaacaggtga accaaactca
     3061 aatacacctg aatcgaaatg tatgttatta aacattgaga aaattgtggg ggcttaacaa
     3121 tgagtacagt tcaaactcaa aacattatta aaatctccgc aacctcggcg ctgacaccgg
     3181 cgccgcaggc tcgttcgcac caagtggaag tagcgaaact gatcgatgtc accacttgta
     3241 tcggctgtaa agcctgtcaa gtgggctgtt cagaatggaa tgacattcgc tccgatgtaa
     3301 atgcaaactg tgtcggcgtg tacgacaacc ctgcggatct aaatgcgaaa gcgtggacag
     3361 taatgcgctt taacgaagta gaagaaaacg accgtttaga atggttgatc cgtaaagacg
     3421 gctgtatgca ctgtgccgag ccgggttgct tgaaatcttg cccgtcaccg ggtgcgatta
     3481 tccaatacgc caacggtatt gttgatttcc aatccgacaa atgtatcggt tgtggctact
     3541 gtatcgcagg ttgtccgttc aacattcctc gtatgaatcc ggacgataac cgtgtttaca
     3601 aatgcaccct gtgtgtggat cgtgtcaatg ttggtcaaga accggcttgc gtgaaaacct
     3661 gcccgaccgg tgcaatccgc ttcggtagca aagaagagat gaagttctat gcagaacaac
     3721 gcattgctga tctgaaatct cgtggctatg aaaatgccgg cttgtacgac cctgaaggcg
     3781 ttggcggtac gcacgtaatg tatgtattac atcatgccga caaaccggag ctttattcag
     3841 gcttaccgaa agatccgaag attgatacca cagtaacctt atggaaagac gttttaaaac
     3901 ctgtggcggc agtagcgttg ggtggtttag ctttagcaga agttgcacac tatattaccg
     3961 ttgggccaaa cgttgaggaa gatcttgaag aacaccacca tagcgaaaat gcagaaggag
     4021 gcaaacatga gtaagaaatt tgaaatcacg aacgatacca aaatcgttcg tcataagccc
     4081 ttagctcgtg ttagccactg gttcttagta atctcttttt ttatgacgat gtttaccggt
     4141 gttgccttct tcttccctga ctttgcttgg cttaccgaga ttttaggtac tccacagatt
     4201 gcccgtgcag tccacccatt taccgggatt ataatgttta ttgcatttat tattatggcg
     4261 ttaatatatt ggcaccataa tatccctgag aaaaatgata ttcgttgggc aaaaggcatt
     4321 gttgaagtac taaaaggtaa tgagcataag gtttccgata atggaaaata caatttgggt
     4381 caaaaattac tcttttggac tcttattctt gcgatgttca ctcttttagc cacagggatt
     4441 attatgtgga gacaattttt ctctcactac ttctcgattc ctatgctaag aattgcaatt
     4501 ttacttcatt cagcaagtgc atttatgcta tttaccggaa ttttagtaca tatgtatatg
     4561 gcattctggg taaaaggctc aatcagaggt atggttgagg gttgggttac cgttcgctgg
     4621 gcaaaaaaac accacccaag atggtaccgt gaagaagtgc tacctgaatt agaaagacaa
     4681 gtagctgagc aaaataataa ataacctcaa gtgcggtatt attaccgcac ttttatttta
     4741 ttggtttaaa aagaatatta tgagtatcaa aatactacct caagatgata tcaaacaagc
     4801 agctagttca tttcagcaac ccgagctctt atttgctaat cccaaaaatc tgtatttacg
     4861 ccgcgctaag cggctacgtg aattagccaa gcaaaaccca ttcggtgaat atatggagtt
     4921 ttctgctaac ctcgtggaca ttcaattagc attacttgaa agccagccaa ttgcagatta
     4981 ttctcaaaaa ataaccgctt gtgtagagcg cacgcaagga gaaacaccgc taaatgcaca
     5041 gaattttcag cgtactgatg aatggcggac actactctta gccattattg agaaattcaa
     5101 gccttatgca aatgatactg ttcttgcaac aattgaagta ttggaaaagg cagctaagtc
     5161 agagctagac acacttgctg ataatttgct aaatgaacga tacgaacttg tgggcgcaga
     5221 taaagctgtc tttatttggg ctgctctctc actttactgg gtacaattag ctcaacaatt
     5281 accacgtaat tctcgtgcag aaataggcca taaacattta tgtccggtat gtaactcagc
     5341 acctgtaagc agtgtgattc atttcggtga agctcaaggg ttacgttatc tacactgttc
     5401 tttatgtgaa agtgaatggc atgtagtacg tacaaagtgt acaaactgtg atgaaaccgg
     5461 caaactggat tattggagct tagatacagt agaagcagca gttaaagctg aaagttgtgg
     5521 cgactgccat tcctacttaa aagtactcta tcaagataaa gacgtgaatg tggaacctgt
     5581 tgctgatgat ttagcaactc tattcttaga ttccgagatg gaacaaaaag gtctttcaag
     5641 aagtgggata aatccatttt tatttcaagt agagtaactc atttacaaca aaaacggagc
     5701 ataacgctcc gttttttatt acatttaact catacactat acttttttaa tcagctattt
     5761 ttttaacttc acagcggtta gcaataatct cccgatctga cataaatgcg tatcggcatt
     5821 gagatttaaa atattgaatc acagaatcat caagaggtcg ttgtgctcca acacgtaatt
     5881 cctccataga aaaattacta acctcttcat ctttctcttt atttttcaat accttacgtt
     5941 cagatattct aaacttaggc ttgtcttgct gtttttttac tccgtttaat ttttctttat
     6001 tactaggaat aggattactt gcataactaa tactattcat cgtaagaaaa agagaaataa
     6061 caaaaaagct aaaagcgttt ttcatagcaa acccataaat aaaatgtagc ataatcataa
     6121 aattacgtaa cattttatta catttagcgc atggttacaa attcttcaga tcctgtcggg
     6181 tgaatagcca ctgtgttgtc aaaatcagct ttcgttgcgc ccattttaat tgcaacagca
     6241 aaaccttgaa tcatttcatc aacaccaaaa ccaataccat gtaacccaac cactttttcc
     6301 ccttccccaa cacaaactaa tttcattcgg caaggttgac gatgttgtgt aaccgcagta
     6361 tacattgcag taaatgaaga tttatacact ttcacatttt ctgccccata ttgctcaatc
     6421 gcttttggct cacttaaacc aacagtacct attggtgggt ggctaaaaac gactgtcggt
     6481 actaagctat aatccaaatg ttcatttggt ttattattga acaaccgttc cgatagcctg
     6541 cgaccagctg caactgcaac aggagttaat tcaataccac cttcaataat atcaccaaca
     6601 gcatagatat ttggcacatt agtattttgg aatttatcca ctttgataaa accacgctcg
     6661 ttggtttcaa caccagcagc ctctaaatta atcttatctg tcgctggctc acgaccaata
     6721 gcccacacca agctttcaac agaggtttca cgaccatctt gcaattttaa tgtcaatgaa
     6781 ccatctgcat ttttaactac ttcttgagga gtcgcttgtg tatgtaattc gatcccatct
     6841 tgagctaata cttcaagcaa tgtatccact attaatgggt cttgattacg cattggagca
     6901 tgttgacgaa caaaaagatg ggtatttact cctaaactat taaatactcc agctaattca
     6961 actgcaatat accctgcccc cacaattgct acggacttcg gtaaagcatc tagtgcaaat
     7021 acaccatcag aagtgatacc gtattcagcc cctttcacat tgggtacagt tggacgacca
     7081 cctgttgcaa tcagaatatg gtctgctgtg acctcctcaa cggaaccatc agcataactc
     7141 acttctaatg ttttagcatc tttaaagcga gcaaaaccat ttaaaacatc aacattattt
     7201 tttgccagca cattaccata tgaggtatga atgcgcccaa tataggcctg gcgactctca
     7261 actaatttgg cataatcaaa attatttacc gtaatgtcaa aaccataatc aggggcgtaa
     7321 tggttaatcg cttctgcaac ttgtgcacca tagaacatca cttttttggg tacacatccc
     7381 acgttcacac aagtgccacc taaatgtttt gcttcaataa tggcacattt ttgcccatag
     7441 cttgctgctc gattaattga agcaatacca ccactaccac cgccgatagc aatataatca
     7501 taatgtttag ccataagcta ttcctcgatc tataaaaaca aaagcaactt attcgttaag
     7561 cgctttatca aattaaattt gcatagaaga ctaatgtttc atatgccctg aattcaacat
     7621 tttatcaata tacgccatcg ctaatgctga aacaataaag gctaagtgaa taactacttg
     7681 ccacatcatt tgcttttcat caagatttga agcattgata aatg
//
LOCUS       DANLVT010000112         7716 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.112, whole genome shotgun sequence.
ACCESSION   DANLVT010000112 DANLVT010000000
VERSION     DANLVT010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7716)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7716)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7716
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.112"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            60..671
                     /locus_tag="PXC99_002058"
     CDS             60..671
                     /locus_tag="PXC99_002058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HDL5418481.1"
                     /translation="MKKLSSALLSCFLLGLSSPALTADTYITENLSTFMRKGAGDQFR
                     ISGAIQAGEKVTVLDRKERYSLIRDSRNREGWVLNSDLSDTASPKELIPQLKQQVQDL
                     TNRLSKIDTEWQQRTAEMQRRTQDSVQKSSDLVEENAQLKRELEILKNKNRDLETMHD
                     SEKREIVIQWFIYGGAVLGAGLLLGLLVPFLIPRRRRNNSGWA"
     gene            complement(725..2023)
                     /gene="aroA"
                     /locus_tag="PXC99_002059"
     CDS             complement(725..2023)
                     /gene="aroA"
                     /locus_tag="PXC99_002059"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HDL5418482.1"
                     /translation="MEKLTLTPISRVEGEINLPGSKSLSNRALLLAALATGTTQVTNL
                     LDSDDIRHMLNALKALGVKYELSDDKTVCVVEGIGGAFKVQNGLSLFLGNAGTAMRPL
                     AAALCLKGEEKSQIILTGEPRMKERPIKHLVDALRQVGAEVQYLENEGYPPLAISNSG
                     LQGGKVQIDGSISSQFLTALLMSAPLAEGDMEIEIIGDLVSKPYIDITLSMMNDFGIT
                     VENRDYKTFLVKGKQGYVAPQGNYLVEGDASSASYFLASGAIKGKVKVTGIGKKSIQG
                     DRLFADVLEKMGAKITWGEDFIQAEQSPLKGVDMDMNHIPDAAMTIATTALFAEGETV
                     IRNIYNWRVKETDRLTAMATELRKVGAEVEEGEDFIRIQPLALENFQHAEIETYNDHR
                     MAMCFSLIALSNTEVTILDPNCTAKTFPTYFRELEKLSVR"
     gene            complement(2069..3163)
                     /locus_tag="PXC99_002060"
     CDS             complement(2069..3163)
                     /locus_tag="PXC99_002060"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDL5418483.1"
                     /translation="MQFINIANEGVKSLSPYQAGKPIEELERELGIQNIIKLASNENP
                     FGFPESAKKAILNQLDDLTRYPDSNGFELKTTIAQKFGVQANQITLGNGSNDLLELFA
                     HTFAGEQDEIIYSQYAFIVYPLVTKAINAVAREILAKNWGHNLDAFLAAITEKTKLIF
                     IANPNNPTGNFLTQAEIEGFLAKVPANVIVVLDEAYTEFTAPQERVDSFGLLAKYPNL
                     IVSRSLSKAYGLAGLRIGYAVSNPEIADLLNRVRQPFNCNSLALASAIAVMNDDEFVK
                     KVAENNRLEMARYEAFCQANGLEYIPSKGNFITIDFKRPAAPIYEALLREGVIVRSIA
                     GYGMPNHLRISIGLPQENERFFTALLKVLA"
     gene            3435..4754
                     /locus_tag="PXC99_002061"
     CDS             3435..4754
                     /locus_tag="PXC99_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine permease"
                     /protein_id="HDL5418484.1"
                     /translation="MNHLLYSVEDKPPFGLSLLLASQHLLAALGGIIAVPLVLGNVLK
                     LSTADTIILVNAALLISGIVTIIQCRGIGPIGIRLPSVMGTSFTFVAAALAIGFSESG
                     IAGIMGASLVGSLVMIIGSFFMPYIRKLFPPVVTGTVIMMIGLSLIPVAVDWFAGGQR
                     TDPHYATPENLIMASFVLIIVVALVQWGKGIFSAAAIVIGMMIGYIVSLALGWVSFNG
                     VKEAQLFALPQPLHFGLEFPISGIIGMSIAYLVTIVESSGNFLALGNATKTEITGKHL
                     RGGVLCDGLGSAFAAIMSTTPFSSFSQNIGVISLTGVASRYVVAFTGALLVLAGLFPV
                     FGALIVSIPLPVLGGAGLMMFAMIIAAGIQMLDNIQRSKRNGLIIAISIGCGLAVTTR
                     PELLDKLPHFFKEVFGSGITVGSLLALILNLVLPEDKITKKENKSDE"
     gene            complement(4924..6867)
                     /gene="ftsH"
                     /locus_tag="PXC99_002062"
     CDS             complement(4924..6867)
                     /gene="ftsH"
                     /locus_tag="PXC99_002062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HDL5418485.1"
                     /translation="MVKNILLWVVIAIVMMTAYEGFNSNFSGSSNTVPYSTFLSDIKE
                     NRLKGVDFKQNDDTILVTKNDGATYQTVMPMYDEYLMADLAKTNAVITGQPAERRGLL
                     SQILISWFPMLLLIGFYVFYMRQMQGGGGRGAMGFGKNKAKMLTADEVKTRFSDVAGC
                     DEAKEEVGEVVEFLRDPTKFQKLGGRIPKGILMVGPPGTGKTLLAKAIAGEARVPFFT
                     MAGSDFVEMFVGVGASRVRDLFDQAKKNAPCIIFIDEIDAVGRKRGGAGFSGGHDERE
                     QTLNQMLVEMDGFEGSEGVIIIAATNRADVLDDALTRPGRFDRQVTVDLPNVKGREQI
                     LKVHLKKVPLAEGVDPMQIARGTPGYSGAQLANLVNEAALFAARKNKRVVMMEDFEEA
                     RDKINMGPERRSNTMTEKEIINTAYHEAGHVIVGYLMPEHDPLNKVTIVPRGQALGFA
                     QFLPEGDRVSETFTKLESQLSTLFAGRIAEGLIFGEDKITTGASSDIHRATQIARAMV
                     TQWGFSKELGPIFYQNEDGMGAIKGVSEESQKLIDVEMRKIIDRNYQRAKQTLEENMD
                     ILHAMKDALLKYETLDSKQIDDLMARRPVGEPSGWTDTPTKDDNATPPSGEQAADVSS
                     TLEDNPNKDNNIGDSLADTKAEH"
     gene            complement(6988..7614)
                     /gene="rlmE"
                     /locus_tag="PXC99_002063"
     CDS             complement(6988..7614)
                     /gene="rlmE"
                     /locus_tag="PXC99_002063"
                     /EC_number="2.1.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uridine(2552)-2'-O)-methyltransferase
                     RlmE"
                     /protein_id="HDL5418486.1"
                     /translation="MGRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQT
                     DRLFKPGMTVVDLGAAPGGWSQYVVTQIGSKGRVIACDILDMNPIVGVDFLQGDFREE
                     SVLNALLERVGEDKVNVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLATKGSF
                     VVKVFQGEGFDEYLREIRSLFSVVKVRKPEASRDRSREVYIVATGYKG"
BASE COUNT         2158 a         1723 c         1464 g         2371 t
ORIGIN      
        1 attaattttt caaaaagaat acaggcaact gtattcttcc tagctttaga ggaatatata
       61 tgaagaaatt atcatcagct cttctgtctt gttttttact cggcctatct agccctgctt
      121 taacggcaga cacttacatt actgaaaatc tgagtacatt tatgcgcaaa ggtgctggtg
      181 atcaattccg catttcaggc gctattcaag caggtgaaaa agtcacagta ttagatcgta
      241 aagagcgcta cagtctgatt cgagatagtc gtaaccgtga aggttgggta cttaattcag
      301 acttaagcga tactgctagt ccaaaagagc tgattcctca attaaaacaa caggttcaag
      361 atttaaccaa tcgcctgagc aaaatcgata ccgaatggca acaacgtacc gcagaaatgc
      421 aacgtagaac gcaagattca gtgcagaaaa gcagtgattt ggttgaggaa aatgcacaac
      481 taaaacgtga actggaaatc ctgaaaaaca aaaatcgtga tttagaaaca atgcacgatt
      541 ccgagaaacg tgaaatcgtg attcagtggt tcatctatgg tggtgctgtg ttaggcgcag
      601 gtttactact tgggttactc gtgcctttcc tgatccctcg ccgcagacgt aacaacagcg
      661 gttgggctta gtctgccaca ataaaacgta aaaaggattc agttttctga atcctttttt
      721 acttttatct gaccgataat ttttccaact ccctaaagta agtcgggaac gttttagcgg
      781 tacaatttgg atctaagatc gtcacttctg tattcgataa cgcaattaat gaaaaacaca
      841 ttgccatacg gtgatcgtta taggtttcaa tttcagcgtg ctggaagttt tctaacgcaa
      901 gcggttgaat ccgaataaaa tcttcccctt cttctacctc tgccccgact ttacgcaatt
      961 cggttgccat tgctgtcaag cggtcggttt cttttacccg ccagttataa atattgcgga
     1021 taactgtttc tccttcggca aataaagcgg ttgttgcaat cgtcattgcc gcatcaggaa
     1081 tatgattcat atccatatct acgcctttta gcggggattg ctcggcttga ataaaatcct
     1141 ctccccaagt gatttttgcc cccatttttt ccaacacatc ggcaaacaag cggtcgcctt
     1201 ggatcgattt tttaccaatg cccgttactt ttaccttgcc tttaatcgca ccggaggcta
     1261 agaaataaga ggcagaagag gcatctccct ccaccaaata attaccttgt ggagcaacat
     1321 agccttgttt acctttaact aaaaaggttt tgtaatctcg attttcaacc gtaataccaa
     1381 aatcgttcat catcgaaagg gtaatatcaa tataaggttt tgataccaga tcaccgataa
     1441 tctcaatttc catatcgcct tccgctaatg gggcagacat cagcaatgcg gttagaaatt
     1501 ggctggaaat cgagccgtca atttgcactt ttccgccctg caaaccgcta ttgctaattg
     1561 ccaacggtgg atagccttca ttttctaaat actgtacctc tgcccctact tggcgtaaag
     1621 catcgactaa gtgtttaatc gggcgttctt tcattcttgg ttcaccggta agaatgattt
     1681 gggatttttc ctcacctttt aaacacaatg ctgctgcaag tggtcgcatt gccgtgcctg
     1741 cattgccgag aaacagtgat aagccgtttt gaaccttaaa agctccacca atcccttcaa
     1801 ctacacagac ggttttatcg tccgatagct catatttcac gcctaacgct tttaaggcat
     1861 tgagcatatg tcgaatatca tcactatcta ataaattggt cacttgagtc gtaccggtgg
     1921 ctaaggcggc taataataag gctcggttag acaggctttt agaaccaggt aaattgatct
     1981 cgccttctac tcgggaaatc ggggttaaag ttagtttttc catttttctc tttaaatttg
     2041 taaaattttc ataaaaggta accgcttgtt aagctaacac tttcaataag gcagtaaaaa
     2101 atctctcgtt ttcttgcggt aaaccgatac taatgcgtaa atgattcggc attccataac
     2161 ctgctatcga gcgaacaatc acgccttcac gcagtaatgc ctcataaatc ggagcggcag
     2221 gacgtttgaa atcaatagta ataaaattgc ccttagaagg gatatattcc aagccgtttg
     2281 cttggcagaa agcctcatag cgagccattt ccaagcggtt attttctgcc acttttttga
     2341 caaattcatc atcattcatt accgcaatcg ctgaagctaa ggcaagacta ttgcagttaa
     2401 acggctggcg aacacgattt aataaatccg caatttcagg gtttgaaacc gcataaccaa
     2461 tccgaagccc ggctaagccg taagccttag agagtgaacg tgacacaatt aaattcgggt
     2521 attttgccaa taagccaaac gaatccaccc gttcttgagg cgcagtaaac tcggtataag
     2581 cttcgtccag caccacgatt acatttgccg gcactttagc taaaaagccc tcaatttccg
     2641 cttgggttaa aaaattaccg gtcggattat tcgggttggc aataaaaatt aatttagttt
     2701 tttcggtaat tgcagccaaa aaggcatcta aattgtgtcc ccaattttta gccagaattt
     2761 cacgggcaac ggcattaatc gctttcgtca ccaacggata cacaataaac gcatactgag
     2821 aatagataat ttcatcttgc tcaccggcga aggtgtgggc aaacagctct aataaatcgt
     2881 ttgagccatt gcctaaggtg atttgattgg cttgtacgcc aaatttttgg gcaatagtgg
     2941 tttttaattc aaagccgttt gaatccggat agcgggttaa atcgtcaagc tgattcagaa
     3001 tcgccttttt tgcactttca ggaaaaccaa atgggttttc gttcgaggct aatttaatga
     3061 tattttgaat ccctaattca cgctctagct cctcaatcgg ctttcctgct tggtaaggcg
     3121 aaagggattt cacgccctca tttgcgatgt tgataaattg cataataacc tctgattatt
     3181 cttataaaat ataagttcgg attgtagtaa agaatgattg cctttaccag taaatttttt
     3241 gttacaactg gaaagaaatt ggtacaaaca ttcggattag ctttgcaaaa agcgtaaaaa
     3301 atcttaccgc ttgtcattta tcagttaggg aaaataaaaa atcactctct tatataaaaa
     3361 caattacgca aacgattgct tattaaaaaa acttcagtat aatgccgaca ttttttaact
     3421 ctcgaggaat cactatgaac catttacttt attctgtcga agacaaaccg cctttcgggc
     3481 tgagcttatt gcttgcctca caacatttat tagccgcttt aggtggcatt atcgctgtac
     3541 ctttagtgct agggaatgta ctcaaactct ctactgcgga tactataatc ttagttaatg
     3601 ctgcactttt aatttcaggc atcgtcacta ttattcaatg tcgaggtatt ggcccaatcg
     3661 ggattagact accgagtgta atgggaacta gctttacgtt tgttgcagca gcattagcga
     3721 ttggtttcag tgaaagtggc attgccggca ttatgggagc ctctttagtt ggctctctag
     3781 tgatgattat cggcagtttt tttatgcctt atatccgtaa gctttttcca cccgtggtaa
     3841 caggtactgt cataatgatg attggcctaa gtttaattcc tgttgcagta gactggtttg
     3901 ctggtggtca gcgtactgat ccacactatg caaccccaga aaatcttata atggctagtt
     3961 ttgtattaat tattgtcgtt gctttagtac aatgggggaa aggtattttt tcagctgctg
     4021 ctattgtgat tggtatgatg ataggttata tcgtttcgct agctctgggt tgggtaagtt
     4081 ttaatggcgt gaaagaagca caactttttg cgttaccaca acctctacat tttggcttag
     4141 aatttccaat ctccggtatc atcggaatgt caattgctta tttagttacc attgtagaat
     4201 ctagcggaaa tttcttagca ctaggcaatg caactaaaac tgaaattacc ggaaaacact
     4261 tacgtggagg tgtattatgt gatggtttag gctcagcatt tgcggcaatt atgtccacaa
     4321 ctcccttttc ttctttctca caaaatattg gggtcatttc attaaccggt gtagccagtc
     4381 gctatgttgt agcatttaca ggcgcattac ttgtactagc cggtttattt cctgtatttg
     4441 gagcattaat cgtgtctatc ccgttacctg tgcttggcgg tgcaggctta atgatgtttg
     4501 ccatgattat cgcagccggt atccaaatgt tagataatat tcaacgtagc aaacgaaacg
     4561 gtttaattat tgctatctct atcggttgtg ggctggccgt aacaactcga cctgagctat
     4621 tggataagct tccacacttc tttaaagaag tttttggctc aggtattacg gtcggctcct
     4681 tattagcact tattttgaat ttagttttac ctgaagataa aataaccaag aaagaaaata
     4741 agagtgatga ataaatcacc ctaaaaaaac aaggacagct cacaatacaa ctttgatgct
     4801 gtcctttatt cccatagaga gcatatttaa atttaggtta ataaaaaaat ctgcactcta
     4861 tattggtgtt tacctttaga gtacagattt cttcttattc taactttcta gcaaacaatt
     4921 agattaatgt tccgctttgg tatcggctaa cgaatcccca atgttattat ctttatttgg
     4981 attatcctct aaagttgaac ttacatccgc tgcctgttca ccacttggtg gagtggcgtt
     5041 atcgtcttta gttggggtat ctgtccaacc tgatggttca cccaccggac ggcgtgccat
     5101 taaatcatca atttgcttgc tgtctaaggt ttcgtatttc aataaggcat ctttcattgc
     5161 gtgtaagatg tccatatttt cttccaaagt ttgcttcgct cgttgatagt tgcggtcaat
     5221 gatcttacgc atttccacat caatcaattt ttgcgactct tccgatacgc ccttaattgc
     5281 acccattcca tcttcatttt gatagaaaat cgggcctaat tcttttgaga agccccattg
     5341 agtaaccatt gctcgtgcaa tttgggttgc tcgatgaata tcagaggaag cccctgtggt
     5401 aattttatct tcaccaaaaa tcaagccctc agcaattcgc cctgcaaata gggtggaaag
     5461 ttggctttcc aatttggtaa atgtttcgct tacacggtca ccttccggta agaattgagc
     5521 aaaacctaac gcctgaccac gaggcacaat tgtcacttta ttcagcggat cgtgttccgg
     5581 cattaaatag ccaacaataa cgtgtccagc ttcgtggtaa gcagtattga tgatctcttt
     5641 ttccgtcatt gtatttgaac ggcgttccgg ccccatattg attttgtcac gggcttcttc
     5701 gaaatcttcc atcattacca cacgtttatt cttacgggca gcaaataagg cagcttcgtt
     5761 caccaagttt gctaattgag caccagagta acccggcgta ccacgagcaa tttgcatcgg
     5821 gtcaactccc tctgcaagcg gtactttttt caagtgaact ttcaaaattt gctcacgccc
     5881 tttcacgttc ggcaaatcga ccgtgacttg gcggtcgaaa cgccccggac gagttaaggc
     5941 atcatctaac acatcggcac ggttggttgc agcgatgata atcacacctt cagagccttc
     6001 aaagccgtcc atctcaacta acatttggtt gagggtttgt tcacgctcat cgtgtccacc
     6061 gctgaaacct gcaccaccac gtttacgccc taccgcatca atttcatcaa taaaaataat
     6121 acaaggggca tttttcttgg cttggtcgaa taaatcacgc acccgtgaag cacccacacc
     6181 tacaaacatt tccacgaagt cggaacctgc cattgtaaag aatggcactc gtgcttcacc
     6241 tgcaatcgct ttcgccaata aggttttacc cgtacccgga gggcctacca tcaagatccc
     6301 ttttggaatg cgcccaccta atttttgaaa tttagttggg tcacgcaaaa actcaacaac
     6361 ttcgcctact tcttctttgg cttcatcaca gccggctaca tcagaaaatc tggtcttaac
     6421 ttcgtctgcg gtcaacattt tggctttatt tttcccaaag cccattgcac cacgtcctcc
     6481 gccaccttgc atttgtcgca tataaaacac atagaaaccg attaacagca acattgggaa
     6541 ccaagaaatc aaaatttgcg agagcaagcc acgacgctca gcaggctgac cggtaatcac
     6601 tgcattggtt tttgctaaat ctgccattaa gtactcatca tacatcggca ttacggtttg
     6661 gtaggttgca ccatcatttt tcgtcaccaa aatggtgtca tcattctgtt tgaaatcgac
     6721 cccttttaaa cgattttctt taatatcgct taaaaaagtc gaatatggca ctgtatttga
     6781 gctaccactg aaattagaat taaaaccttc ataggctgtc atcatcacaa tggcaatcac
     6841 cacccaaagt aaaatatttt taaccatatc gttcaaggtt aatcccctat ctgctgaata
     6901 aaaaactgtt caagattact ataaaagcgg tcgaattttc caattttttt gcaaaatgtt
     6961 aataaaaaat gaccgcttgc ttgttttcta gcctttataa cctgtcgcta caatataaac
     7021 ttctcgagac cgatctcgag acgcctccgg ttttctgact tttaccacac taaagagcga
     7081 gcggatttct cgaaggtatt catcaaatcc ttcgccttgg aataccttaa ccacaaaact
     7141 gcctttggtt gctaatactt ggcgacacat atccaatgcc aattccacta aatacattgc
     7201 acgaggaata tcaaccgacg gcataccgct gaaattggga gccatatccg acatcaccac
     7261 attcactttg tcttcgccta ctcgctcaag taacgcattc agcaccgatt cttcacggaa
     7321 gtcgccttgt aagaaatcca cgcctacaat cgggttcata tctaaaatat cacaagcgat
     7381 tactctgccc ttactgccga tttgcgtcac cacatattgc gaccaaccgc ccggtgcggc
     7441 accgagatcc accaccgtca ttcccggttt gaataaacgg tcggtttgtt gaatttcatc
     7501 taacttaaaa tacgcccgtg aacgcaattt ttgtttatgt gctttttgca caaattgatc
     7561 tttaaaatgt tctgcaagcc aacgtgatga actcgcactt cgttttctac ccatttgttc
     7621 ttctatctta attaattcaa cgatttataa taagggttaa attagcaaat tcaagagatg
     7681 ttctaaaatt tagctcggct tattatgctt aattaa
//
LOCUS       DANLVT010000113         7654 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.113, whole genome shotgun sequence.
ACCESSION   DANLVT010000113 DANLVT010000000
VERSION     DANLVT010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7654)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7654)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7654
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.113"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            34..663
                     /locus_tag="PXC99_002064"
     CDS             34..663
                     /locus_tag="PXC99_002064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HDL5418487.1"
                     /translation="MAVSATSFAQTTQPTAAEQMNAVKASVAEKATVAKEATKEKAAE
                     LKAGSAEKMAIAKAKTESFKDSAKNKMDAVKATTAEKTDVIKAKAASASDTMKVKAQE
                     AKAATAEKAATAHETLNSAKTATAEKAASMKAAATEKMSAVKKSQKVNINTANEEQLQ
                     SLTGIGEAKAKAIVEYRKKHGKIKNAAELANIPGIGDATIEKVAPYLTF"
     gene            811..1440
                     /locus_tag="PXC99_002065"
     CDS             811..1440
                     /locus_tag="PXC99_002065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL5418488.1"
                     /translation="MALDFNSVGLDSVEAKGGYGIGLQIGQQLLGSGMDVNAETVARG
                     IYDVLNNNEPAIDINEVTAALQELGQRAEAAQAEAFKAIDAENKAFLEENKKANGVIV
                     TDSGLQYEILTEGTGEKPTATSTVRVHYTGSLIDGTVFDSSVKRGQPAEFPVNGVIRG
                     WTEALQLMPVGSKWRLTIPQELAYGERGAEASIPPFATLVFEVELLDIL"
     gene            1506..2021
                     /locus_tag="PXC99_002066"
     CDS             1506..2021
                     /locus_tag="PXC99_002066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein disulfide oxidoreductase"
                     /protein_id="HDL5418489.1"
                     /translation="MQKKSLISRLLKNIFLYGSLFIIISLVVDWYRSPSAPAQFEQTV
                     HYDIQHQPKVIAQLSHEKPMLLYFWGSWCHYCQVVSPNIQQLANDGTEVLGVALKSGD
                     ENDVQAYLNENGYTFATLNDPSGDFSRGWNIQATPTILIIKDGKIAHHTTGYTSYLSL
                     KFRLWLADVLY"
     gene            complement(2069..2999)
                     /locus_tag="PXC99_002067"
                     /pseudo
     CDS             complement(2069..2999)
                     /locus_tag="PXC99_002067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433453.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(3058..3708)
                     /locus_tag="PXC99_002068"
     CDS             complement(3058..3708)
                     /locus_tag="PXC99_002068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element ISMha4 family transposase"
                     /protein_id="HDL5418490.1"
                     /translation="MRKSRLSQYKQNKLIEQFVAGVTARTASELVNVNKNTAAYYFHR
                     LRLLIYQHSPHLEMFEGEIEVDESYFGGHRKGKRGRGAAGKTAVFGLLKRDGKVYTVV
                     VPNTQFATLLPIIREKVKPDSIVYTDFYRSYDVLDVSEFNHFRINHSTHFAENQNHIN
                     GIENFGSQAKRHLRKFNGIPKVHFELYLKECEWRFNHSDLKSQISFLKQLVKGSLG"
     gene            4037..5395
                     /gene="mnmE"
                     /locus_tag="PXC99_002069"
     CDS             4037..5395
                     /gene="mnmE"
                     /locus_tag="PXC99_002069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HDL5418491.1"
                     /translation="MKDTIVAQATPIGRGGVGILRVSGPLAETVAQAVLGKTLPPRIA
                     NYLPFKDEDGTVLDQGIALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILQVKGLR
                     IARAGEFSEQAFLNDKLDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINALVDS
                     VIYLRTYVEAAIDFPDEEIDFLADGKIEAKLNEIIAQLDGVRREAKQGSILREGMKVV
                     IAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS
                     DEVERIGIQRAWEEIAQADHVLLMIDSTEQQADQFRQEWAEFLAKLPANMPVTVIRNK
                     VDLSGEQEGLIQVDDFTMIRLSAQTKVGVDLLREHLKKSMGYQSSTEGGFLARRRHLQ
                     ALETAAEHLERGHIQLTQFLAGELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCI
                     GK"
     gene            5396..6661
                     /gene="tilS"
                     /locus_tag="PXC99_002070"
     CDS             5396..6661
                     /gene="tilS"
                     /locus_tag="PXC99_002070"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HDL5418492.1"
                     /translation="MALFNRFQTQCATHLPNQTAFLIGLSGGVDSVVLLHLFARTSFH
                     VRAIYVHHGLSPNADDWAAFCEQYCKRLNIPFILQKVRVDSSNGVENGAREARYQAIQ
                     QQLKPNEVFATAHHLDDQAETFLLALKRGSGVKGLSAMQAVTFLQNFTVFRPLLTFTK
                     SDLMGYAVQHQLGWIEDESNADNRYDRNFLRNSILPLLNQRWQHFSQMVARSAQHCAE
                     QQALIEELLSNELKSRTGEKQQLNINGFGQFSLAKQQQLSRLWLEQNGVRMPSQAQLQ
                     AVISELIFAKADKNPQVKVGENIIRRYQQAIYVTEEIADIPPFEVVLPTETKVELPYQ
                     LGTIIRQQQEIICKKNGKNHRLQLPQELAQSTISIKIGQLGKVKCYGKAQREEMKKIW
                     QNHGIPVWERNRTPLIFWQDELVGLLPIL"
     gene            complement(6651..7544)
                     /gene="xerD"
                     /locus_tag="PXC99_002071"
     CDS             complement(6651..7544)
                     /gene="xerD"
                     /locus_tag="PXC99_002071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HDL5418493.1"
                     /translation="MAELDPIIEQFLDTLWQEHGLSENTVASYRSDLERFSDYFSEPK
                     AFLSLDHIDLQGFLGERLEQGYKATSSARMLSCLRKFFRFLCLEHYRQDDPTLTLSSP
                     KRGASLPKSLSEDQVMDLLDAPNTLDPIELRDKAMLELLYATGLRVTELVSLSMDNIS
                     LKQGVVRIIGKGDKERLVPLGEEANYWIQEFFQYGRPILLNNQQSDVVFPSRRGQQMT
                     RQTFWHRIKHYAVLAGIDADKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQ
                     IYTQVAKARLKSLHQQFHPRG"
BASE COUNT         2369 a         1743 c         1637 g         1905 t
ORIGIN      
        1 gcattaaaaa cattattagc attgggcgtg gcaatggctg tttcagctac ttcatttgca
       61 caaaccactc aacctactgc ggctgaacaa atgaacgcag ttaaagcctc tgttgccgaa
      121 aaagcaactg tggctaaaga agcaacaaaa gagaaagcag cggagttaaa agccggttct
      181 gcggaaaaaa tggcgatagc aaaagccaaa accgaatcat ttaaagattc cgctaaaaac
      241 aaaatggacg cagtaaaagc caccacagca gaaaaaacgg acgtgattaa agcgaaagcc
      301 gcatctgcaa gcgacacaat gaaagtgaaa gctcaggaag caaaagccgc caccgcagag
      361 aaagctgcaa ctgctcatga aaccttaaat tcagccaaaa ccgcaaccgc tgaaaaagcg
      421 gcctcaatga aagcagctgc aacagaaaaa atgtcagcag tgaaaaaatc acaaaaagtg
      481 aatatcaaca ctgccaacga agagcaatta caatcgctta ccggcattgg tgaagcaaaa
      541 gccaaagcga ttgtagaata ccgcaaaaaa cacggtaaaa tcaaaaatgc agcagaactg
      601 gcgaacattc ccggcattgg cgatgcaacc attgagaaag ttgctccata tttaactttc
      661 taatgttctg caagcggtta ttttgttgca aaattttgca gaaaaataac cgcttgttca
      721 tttcacacct tgtattctta aatttcaccc ccattaagtg aatcgtattt ctttcaatac
      781 agtattcaat aaactcaaaa ggaacagaaa atggcattag atttcaattc agttggatta
      841 gattcagtag aagcaaaagg cggttacggc atcggtttac aaattggtca gcaactttta
      901 ggcagcggaa tggacgtaaa cgcagaaacc gttgcccgtg gtatttatga tgtgttaaac
      961 aacaatgagc cggcaatcga catcaatgaa gtgaccgctg cattacaaga attaggtcag
     1021 cgtgcggaag cggctcaagc agaagcattc aaagcgattg atgccgaaaa caaagcgttc
     1081 ttggaagaga ataaaaaagc aaacggtgta atcgttaccg acagcggttt acaatatgaa
     1141 attttaaccg aaggcacagg cgaaaaaccg actgcgactt caaccgtgcg tgttcactac
     1201 accggttcat taattgacgg caccgtgttt gacagctcgg taaaacgcgg tcagccggca
     1261 gaattcccgg taaacggagt aattcgtggt tggacagaag cattgcaatt aatgccggtt
     1321 ggctcaaaat ggcgtttaac cattccacaa gaattagcct acggcgaacg tggtgcagaa
     1381 gcatcaattc caccatttgc gaccttagtg tttgaagtgg aattgcttga tattctctaa
     1441 tcaaactcaa ataaaaaacc tgtggaggca tttcacaggt ttttgctatt taagataact
     1501 atattatgca gaaaaaatca ctcatatctc gcttacttaa aaatattttc ctctacggca
     1561 gcctgtttat cattattagc ctggtggttg attggtatcg ctcgccctcc gctccggcac
     1621 aatttgagca aaccgtgcat tatgatattc aacaccagcc gaaagtaatc gcccaattaa
     1681 gccacgagaa gccgatgcta ctctattttt ggggaagttg gtgccactat tgccaagtgg
     1741 tttcgccaaa tatccaacaa ttagcgaatg acggcacgga agttttaggt gttgccctga
     1801 aatccggcga tgaaaatgac gtacaagcct atctcaatga aaatggctac actttcgcta
     1861 ctttgaatga cccaagcggt gatttctctc gaggttggaa cattcaagcc accccaacca
     1921 tcttgattat caaagacggt aaaatcgccc accacaccac cggctacact agctatttga
     1981 gcttaaaatt cagactatgg ctggcagacg tgttgtatta aacgattcct ttcatttgca
     2041 aaaaaatcca ctaaatccga ccgcttgttt acaccaaaaa gacaagcggt actaaattca
     2101 ttgtcatcat tgtggtgatc gataaaatca gcctcgatga gccaaaaata aagcctcggt
     2161 ttttgccgtt gtcgaatttc accagtaaat ttgccattgc tgtgagggcg tacacttcca
     2221 ccaccgtaaa aatcacggtg taaatatagg cagcggtcag agttgcgact tttaccgcaa
     2281 taaaccaagg ggcaataatc gccaccgcta ataacggcga aatccaaatt aattgctgtt
     2341 tggtgaggtt gattttacga gaaaaagtcg attgcaaact gacggttaaa acaccgttga
     2401 tgaataacgc aatcggcgaa tgctccggtg cgtgcaggac attgtcgaat aaatacggaa
     2461 aaatcactca gcggcacaaa tagcattaag tgagcgaaca aaaactcttt gttgatgatt
     2521 tccttaattt gtgcgaaacg aaatttcacg ccgccattca cgccttccac cgaataaaac
     2581 ggcttgacca taaacgcaaa caagccggct tccaaaataa agcagatcca aatcagcgtt
     2641 tcaatcatct caaacctaat aaacggaata ataatcagcg gggcgagcat tgaagacata
     2701 ctggtgactt ttagatattt gccttgtaaa cgggttttag cagcatattc atcgccggca
     2761 atcgccagta aacaggctct ggcattagtg ccgaataagc aactccccaa cccaaagcaa
     2821 gtggttgcca acaataaaat gaggtaatta tccgctgcta aaaacagcat ataggcaacc
     2881 acatctaata aacagcccaa taacatcatt tttgccaagc cgtagcgatc cccccaaatg
     2941 ccggctaaaa ttgccaatgc ctgattacaa aacaacagca atgaaaggaa aaaagcgatt
     3001 tgggcgttat ctagcccttt ctcttttaaa taaaagaaaa ggggctgtcc tagataacta
     3061 acctaaacta cccttaacca attgttttaa aaaggatatt tgagatttta agtcactgtg
     3121 attaaaacgc cattcgcatt ctttcaaata cagctcaaaa tgcactttgg gaatgccgtt
     3181 aaacttacgc aaatggcgtt ttgcttggct cccaaaattc tcaattccat taatgtgatt
     3241 ttgattttca gcgaagtgtg tgctgtgatt aatgcgaaaa tggttaaatt cactcacatc
     3301 aagcacatca taacttcgat agaaatcggt gtaaacaata ctatcgggtt tcaccttttc
     3361 ccgaataatc ggcaaaagtg tggcaaattg cgtgtttggt actaccacgg tataaacctt
     3421 tccgtcccgc tttaaaagcc cgaacacggc ggttttgcct gctgcaccac gtccacgttt
     3481 acctttacga tgaccgccga aataactctc atcaacctca atttctccct caaacatttc
     3541 caaatgaggg ctatgttgat agataagcaa ccgcaagcga tggaagtaat acgccgccgt
     3601 gtttttgttt acattgacca actcagatgc tgttcgggct gttacccctg caacaaactg
     3661 ctcaatgagt ttgttttgtt tgtactgact tagacgactt tttctcattt gggtatctta
     3721 acctaaatgg agtttttagt cgttatctag gacagcccca aagaaaaaca cgctttgcat
     3781 tgaaaaaaag gcggtggtgg aaataaaacg gcgtaggagt aatagttttt ctaaagacat
     3841 tcagaatggt tgaattggtt aaataaagag cggttattct accttttaag tcaaccccaa
     3901 tcaatcggct tttgttttac ctttggcgtg ggtttcggta tgataagcga tatgtagtgg
     3961 cgggtcctgt gcccgcctaa ataccaatga taacttgcgg gcgagcacag gactcgcccc
     4021 tacgataaac aagaaaatga aagacaccat tgttgctcaa gcaacaccga ttggcagagg
     4081 cggtgtgggg attctgcgag tttccggtcc gcttgccgaa accgttgctc aagccgtatt
     4141 aggcaaaaca ttgccacccc gtatcgcaaa ttatttgccg tttaaagacg aagatggcac
     4201 tgtgttggat caaggcatcg ccttattttt taaagctccc aactccttta ccggcgaaga
     4261 tgtgcttgaa cttcaaggac acggtgggca ggttatttta gatttactgc tcaaacgcat
     4321 tttacaagtt aaggggctac gcattgcccg agcaggtgaa ttttccgaac aggcattttt
     4381 aaacgataag ctcgaccttg cccaagctga agcgattgcg gatttaatcg acgccaccag
     4441 cgagcaagcc gctcgttcag ccctgaaatc actacagggt gaattttcta ataaaatcaa
     4501 tgcgttagtt gattcagtaa tttatttacg cacttatgtg gaagcggcga ttgacttccc
     4561 cgatgaggaa attgactttc tggcagacgg taaaatcgag gcaaaattaa atgagattat
     4621 cgctcaatta gacggtgttc gccgtgaagc gaaacaaggc tcgattctgc gtgaaggaat
     4681 gaaagtagtg atcgccggtc gcccgaatgc agggaaatca agcttgctta acgccttagc
     4741 cggacgagag gcggcgattg taaccaatat tgctggcaca acccgtgatg tgttgcgtga
     4801 acatattcac attgacggaa tgccgttgca tattatcgac accgccggtc tccgtgatgc
     4861 cagtgatgag gtggaacgta tcggcattca gcgtgcttgg gaagaaatcg cccaagccga
     4921 ccacgtttta ttaatgattg acagcaccga gcaacaagcc gatcagttcc gacaagagtg
     4981 ggcggaattt ctagccaaac tgccggcaaa tatgcctgtg accgtaattc gcaacaaagt
     5041 cgatttatcc ggcgagcagg aaggcttaat tcaggtggac gatttcacga tgattcgcct
     5101 ctctgcccaa accaaagtcg gcgttgattt attgcgtgaa cacttgaaga aatcaatggg
     5161 ctaccaaagt tctacggaag gcggattctt ggctcgccgc cgtcatctgc aagcattgga
     5221 aaccgctgcc gagcatttag agcgagggca tatccagctt actcaattct tagccggcga
     5281 attgttagcg gaagagttgc gtatggtgca aaatgcctta agtgaaatta ccggccagtt
     5341 cacctctgat gacttattag gcaacatttt cagctcattt tgcatcggta aataaatggc
     5401 actttttaac cgctttcaaa cccagtgtgc aacgcatttg ccgaaccaaa ccgccttttt
     5461 aatcggctta agcggtgggg tggattcggt ggtactactc cacctttttg cccgcacctc
     5521 atttcacgtt agggcaattt atgtccacca cgggctaagc ccaaatgcgg acgactgggc
     5581 agccttttgc gaacaatatt gcaagcggtt aaatattccc tttattttac aaaaggtcag
     5641 agtggatagc tcaaacggcg ttgaaaacgg ggcgagagaa gctcgttacc aagccattca
     5701 acaacagctt aagcccaatg aagtgttcgc caccgcccac catttagatg accaagccga
     5761 aacttttttg ctcgccctca agcgaggcag tggagtcaaa ggattatcgg cgatgcaagc
     5821 ggtcactttt ttgcaaaatt ttaccgtttt tcgaccgcta ctcactttta ctaagtcaga
     5881 tttgatgggt tatgccgttc aacatcagct aggttggatt gaggacgaaa gcaatgccga
     5941 taaccgttac gaccgtaatt tccttcgcaa tagcatcttg ccactactca atcaacgttg
     6001 gcagcacttc agccaaatgg ttgcccgttc cgctcagcat tgtgcagaac agcaagcctt
     6061 gatagaagag ctattaagca atgaactcaa gtcaagaaca ggggaaaaac aacaactcaa
     6121 cattaacggc tttgggcaat tttcacttgc caagcaacag caacttagcc gcctttggct
     6181 ggaacaaaac ggagtgagaa tgccaagcca agcccagcta caagcggtca tttctgaact
     6241 gatttttgca aaagccgata aaaacccaca ggttaaagtc ggcgaaaata ttatcagacg
     6301 ctatcaacaa gctatttacg ttaccgaaga gatcgccgac attccgccgt ttgaggtagt
     6361 acttcccaca gaaaccaaag tggaattacc ctatcagctc ggtactatta ttcgccaaca
     6421 acaagagatc atttgcaaaa aaaacgggaa aaatcaccgc ttgcaactgc cccaagagct
     6481 ggctcaatca actatttcta ttaaaatcgg gcaactaggc aaagtaaaat gctacggcaa
     6541 ggctcaacgg gaagaaatga aaaagatttg gcaaaatcac ggcatacctg tttgggaacg
     6601 caaccgtaca ccgctgattt tttggcaaga cgaattagtt ggcctattac ctatcctcta
     6661 gggtgaaatt gctgatgaag cgatttcaaa cgggcttttg ccacttgagt gtaaatctgg
     6721 gtggtcgata aatcactatg ccccagcaac atctgtacca ctcgcaaatc agccccatga
     6781 ttgaccaaat gggtcgcaaa ggcgtggcga agcacgtgag gcgagagttt atctgcatca
     6841 atacctgcaa gcacggcata gtgcttaatc cgatgccaaa acgtctgcct tgtcatctgc
     6901 tgacctcgcc ggctcggaaa tacaacatca gactgctgat tattcagcaa aatagggcga
     6961 ccgtactgga aaaactcctg tatccaataa ttcgcctcct cgcccaatgg cactaaccgc
     7021 tctttatccc ctttaccgat aattctcacc accccttgtt tgaggctgat attatccatc
     7081 gaaagcgaca ccagctccgt tacccgcaga ccggtggcat acagcagctc cagcattgct
     7141 ttatcccgta actctatcgg atctaacgta ttcggggcat ctagcaaatc cattacctga
     7201 tcttcactta aggatttggg taaagaagca ccccgtttag gggaagaaag ggttaaagtc
     7261 gggtcatctt ggcgataatg ctcaaggcat aaaaaacgga aaaatttcct taaacaactc
     7321 aacattctgg cagagcttgt cgccttatag ccttgctcca aacgctcgcc gagaaaacct
     7381 tgtaagtcga tatgatcgag agacagaaat gctttaggtt cagaaaaata atcggaaaaa
     7441 cgctctaagt cagaacgata agaggcaacg gtattttcag acaaaccgtg ttcttgccat
     7501 agtgtatcga gaaattgttc aataataggg tcaagctcag ccatacaagc gggtatattt
     7561 tcaggaaatt ttgcaaattt taacagaatt aaatctataa aaatacaaaa gcgatagaaa
     7621 cgaaaaaacc gattagctta tgctaatcgg ttta
//
LOCUS       DANLVT010000114         7648 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.114, whole genome shotgun sequence.
ACCESSION   DANLVT010000114 DANLVT010000000
VERSION     DANLVT010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7648)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7648)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7648
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.114"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(179..871)
                     /locus_tag="PXC99_002072"
     CDS             complement(179..871)
                     /locus_tag="PXC99_002072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HDL5418494.1"
                     /translation="MTELTPKQEAFCFAYIETGNASEAYRQAYETEDMKSETVHRKAK
                     ELMDNGKITARIEELKAEHAERHKLTVDDLLKELEEARILAREKENPNAMTQATMGKA
                     KLLGLDKQVTDPCFDGETGKGDMILSVNCSSIKDGKALDETCILKAGTHEFITRDSFI
                     FYRHIRIDSLDEIKANIEAGYFIQKALINDEAYQQILKGVLSSKSVTPRYKRFLKNAI
                     RQSACPDILAEP"
     gene            complement(868..1293)
                     /locus_tag="PXC99_002073"
     CDS             complement(868..1293)
                     /locus_tag="PXC99_002073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418495.1"
                     /translation="MKHELNLAGITALMNEPIKATLSFLDFPHIRIERLHHDNGRPFF
                     IGVLSLDLEDHINIEMAGATGFLEALAIIAYHQQLTATPLLVNDDLLSEINKLPHPQR
                     TNPFIDRHGNEITREQMSKEYREKIDYAFAEKRMAEGKE"
     gene            complement(1300..1452)
                     /locus_tag="PXC99_002074"
     CDS             complement(1300..1452)
                     /locus_tag="PXC99_002074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418496.1"
                     /translation="MPELLIVLGNRIAKLEQQHNAMPSETDSITLGILRKQLSQLLKV
                     AERIKE"
     gene            complement(1613..2299)
                     /locus_tag="PXC99_002075"
     CDS             complement(1613..2299)
                     /locus_tag="PXC99_002075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418497.1"
                     /translation="MADHSQFISRLENRIEPKISFQELIQELSNYTNKPFSHIADKLK
                     SLIFSFQQNGIYTNAFVNCTLFEDGESYAIEPKTLHFKDAFDQPKGVLSDVIAQNSID
                     VEHLNAYYVTAREITQLIKTQSPTLLDKLTTKQTQSEISQIQNDYISVYDFIEWASKH
                     YSSLSETANDLNRLLKDKNIQLYRQYGGISPSIDKDNTNLKAAFDFVAINNGYEKQSS
                     SFNFDDDIPF"
     gene            complement(2694..3017)
                     /locus_tag="PXC99_002076"
     CDS             complement(2694..3017)
                     /locus_tag="PXC99_002076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative addiction module antidote protein"
                     /protein_id="HDL5418498.1"
                     /translation="METIQINEQAAEKHGLRPFDVAEFLTDEATIQAYLAEVLKEGDQ
                     DEFLEALNDVARARGMAELAKQTGLGRESLYKTLAKGSKPRFDTIQKILGAFNLVLIP
                     QVKNG"
     gene            complement(3130..3348)
                     /locus_tag="PXC99_002077"
     CDS             complement(3130..3348)
                     /locus_tag="PXC99_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module killer protein"
                     /protein_id="HDL5418499.1"
                     /translation="MMREQTTNQIIITDNFSKWLENLKNPIAKATVARRIKNAINGNF
                     GDHKSLAGTGGLYEMRIATGAGYRIYYA"
     gene            complement(3623..4849)
                     /locus_tag="PXC99_002078"
     CDS             complement(3623..4849)
                     /locus_tag="PXC99_002078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5418500.1"
                     /translation="MARKITPLNDTQIRKAKPEDSPLRDGNGLLLVITSNSKLWRFRY
                     ERPFTKKRNDLSIGAYPDISLAQAREIREEYRALLAQNIDPQTHRQQQEQAKANEISN
                     TYENVAWAWLEHRKTKKNFSDNYQKDVIALIKNNLLPHFGRMPITQITAPMAIKAFKQ
                     YQDEGKLEKLKRAIQKHNEIMMFAVHREMIPFNPTANIAKEFDSPTVEHFKTIKPEDL
                     GEFLYTLQNAQIHLQTRYLILWQLLTMTRPNEAAKAKWADIDEKAKLWTIPAENMKRG
                     IEHKITLSRQAIALLREIKKLSGGKTYLFPSVKNPQTHVNTQTANGAIKRMGYKGKLV
                     AHGLRAIASTYLNEKGYNSDLIEVALSHLNSDRIKAAYDRGERLEQRFKLLQVWADFV
                     EECSQGSLPQYHLKIA"
     gene            complement(5124..5490)
                     /gene="ssrA"
                     /locus_tag="PXC99_002079"
     tmRNA           complement(5124..5490)
                     /gene="ssrA"
                     /locus_tag="PXC99_002079"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            5656..6615
                     /gene="rpoH"
                     /locus_tag="PXC99_002080"
     CDS             5656..6615
                     /gene="rpoH"
                     /locus_tag="PXC99_002080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HDL5418501.1"
                     /translation="MKKFNENEIEDAEIIDAEPIDVDEIDEEETSVEAMHPALVSGSM
                     PVPQGNLDSYIRMANQYPILTAEQEKELAERYYYDEDVEAAKQLILSHMRFVIHIARG
                     YLGYGLPLADLIQEGNIGLMKAVKRFDPNVGVRLVSFAVHWVKAEIHEYVLKNWRIVK
                     VATTKAQRKLFFNLRKNKNRLAWFNEEEIKKVADDLGVSVEEVREMESRMTGQDLGFD
                     LPAGDDDEDSYAPSMYIEDSSSNFADDLEDEQHNGQATAQLAYALATLDERSQDIIKT
                     RWLDDNKATLQDLADKYNISAERVRQLENAALKKIKEAISLDG"
     gene            6781..7074
                     /locus_tag="PXC99_002081"
     CDS             6781..7074
                     /locus_tag="PXC99_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3144 domain-containing protein"
                     /protein_id="HDL5418502.1"
                     /translation="MTQLSTSVYQRADGFINVANAHLKNIAPNQVSNAMLFGCARFNA
                     YVAASKAEYKQQLADSREEVIQYFVEQYKEMLTANLDEYIQNFERYIEGKKAD"
     gene            complement(7092..7337)
                     /locus_tag="PXC99_002082"
     CDS             complement(7092..7337)
                     /locus_tag="PXC99_002082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HDL5418503.1"
                     /translation="MAIQAIPASQDFIWDGKDDDERPVTPSEFSIAMKKRGRPAGSKK
                     ELVSLRLDKSVLEAFRASGKGWQSRINQVLSDFVKQV"
     gene            complement(7393..>7648)
                     /locus_tag="PXC99_002083"
     CDS             complement(7393..>7648)
                     /locus_tag="PXC99_002083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL5418504.1"
                     /translation="YTWDETKRKINLAKHGLDFADADEVLSSPYRFDVEVIRNNEFRI
                     QSFAYSFGRLLVLSLAYTEREDYIRVISFRRASKAEREAY"
BASE COUNT         2056 a         1488 c         1598 g         2506 t
ORIGIN      
        1 ctgatttgtt ggaagccttg atatataagg ctttatagcc agtgggaagc aagtgggtta
       61 cagtgggtta agtgggtaac tttgattttt acccactgtt agccactttt agaggggaaa
      121 tattagcggt tttggtagtg gttaaagggc aaaaaaggcc ttaattctca tcaacggctt
      181 aaggttcggc tagaatatca gggcaagcac tttggcggat tgcatttttt aggaagcgtt
      241 tatatctagg cgttactgat tttgacgata gtacgccttt tagtatttgt tgataggctt
      301 catcattaat tagggctttt tgaatgaaat aaccggcttc tatatttgcc ttaatctcat
      361 ctaacgaatc gattcttata tggcggtaga aaataaagct gtcccgtgtg ataaattcgt
      421 gtgttcctgc ctttaaaata caagtttcat caagtgcttt cccgtcttta atgcttgagc
      481 agtttacact taaaatcata tctcctttac cggtttcacc atcaaagcac ggatcggtaa
      541 cctgcttatc cagccctagc aacttcgctt tgcccattgt ggcttgagtc attgcgttag
      601 ggttttcttt ctctctcgcc agtatacgag cctcttccag ctcctttaaa aggtcatcaa
      661 cggttaattt atggcgttct gcgtgttcgg ctttcagttc ctcaatcctt gccgtaatct
      721 tgccgttatc cattagctct ttagcttttc ggtggacggt ttcggacttc atatcttcgg
      781 tttcataggc ttggcggtag gcttcgctag cattgccggt ttcaatataa gcaaagcaaa
      841 aagcctcttg ttttggtgtg agttcggtca ttctttcccc tccgccattc gcttttcagc
      901 aaaggcataa tcgatttttt ctcggtattc tttgctcatc tgctcccgtg taatttcgtt
      961 gccgtgtcgg tcaataaatg ggtttgttcg ttgtgggtgg gggagcttgt tgatttcact
     1021 caataagtca tcattcacta atagcggcgt ggcggttagc tgttgatgat aggcaataat
     1081 cgctagagcc tctaaaaagc ccgtagcccc tgccatttca atattgatat gatcttcaag
     1141 gtcaagagaa agcacaccga taaaaaacgg tctgccgtta tcgtggtgca gtcgttcaat
     1201 tcggatatgc ggaaaatcta aaaagctcaa ggttgctttg ataggttcat tcattaaagc
     1261 agtaataccc gctaaattaa gctcgtgttt cattttggtt tattccttta ttctttccgc
     1321 cacttttaac agttggctaa gttgttttct taaaatgccg agtgtgattg aatcggtttc
     1381 gcttggcatt gcgttatgtt gttgttccag cttcgctatt cggttgccta gcacaattaa
     1441 aagctcgggc aatgggtaag ctcggtttca gaatagaggc ttaaaaacgt gaatagtctg
     1501 ctaaataatc aggtgttatc tcagaaaaat cgagcttttt ccctagtgct gcttctaatt
     1561 cttgtttatt taaaagtaaa ttttggaaat catttaaatt cattgctgcc acctagaacg
     1621 gaatatcatc atcaaaatta aagctgcttg attgtttttc atatccgtta ttaattgcta
     1681 caaaatcaaa ggctgctttt aaattagtat tatctttatc aatgcttgga cttattccgc
     1741 catattgtcg ataaagctgt atatttttat ctttgagtaa gcggtttaaa tcgttagctg
     1801 tttcactaag acttgagtaa tgtttacttg cccattctat gaagtcataa acagaaatat
     1861 aatcattttg aatttggcta atctctgatt gtgtttgctt ggtggttaat ttatctaaca
     1921 aggttggcga ttgtgtttta atcagctgtg ttatttctct tgctgttacg taataagcat
     1981 ttaaatgttc aacatcaata gaattttgag caataacatc acttaaaacg cctttaggct
     2041 gatcgaaagc gtctttgaaa tgtagtgttt tgggctcaat agcatagctt tcaccatctt
     2101 caaagagagt gcaatttaca aaagcattcg tatatattcc attttgctga aaggaaaaaa
     2161 tgaggctttt caatttatcc gctatatgtg aaaaaggttt atttgtatag tttgataatt
     2221 cttgtatcag ttcttgaaag ctgattttgg gctcaatacg attttcaagc ctagaaataa
     2281 attgactgtg atctgccata agcgcccctt taacgtatcc ctttactgtg agagcgtgga
     2341 aagagaaata aagggctttc tcctttcgtg ccggttaatt actccgccac tatccacgct
     2401 aatttgaata aatccgtata gttacggatt gaacttgata ggttgtattt tgctaattat
     2461 tcagataaat tacaagtaat aagctgtgtt ttattacagt aaatcaaaat aggctaaaga
     2521 tgggtttccg gacgctataa aaaagagcat tcaagcggtc atatttcatt aaggttttgc
     2581 gaatagtgcg gaattttcgg agcagtacgc acgcaaggag caaataaaaa gccgtcaata
     2641 tccatcaacg gctatttaaa agtgaggttt tgacaggtag caagtgataa gttttagcca
     2701 tttttgactt gtggaataag cactaaattg aatgccccta gaattttttg aatagtgtca
     2761 aagcgtggtt tgctgccttt ggctagggtt ttatataggc tctctctgcc tagccctgtt
     2821 tgcttggcca gctccgccat tcctcttgct cttgctacat cgttcaaggc ttctaaaaat
     2881 tcgtcttggt cgccctcttt taacacttcc gctaaatagg cttgaatagt tgcctcatcg
     2941 gttaaaaact ccgccacgtc aaaagggcgt aaaccgtgct tttctgctgc ctgttcattg
     3001 atttgtattg tttccattgc tttctcctgt agtttttaat tcagcccata atgctttcgc
     3061 tttctctata tcggcttgct gtgttgattt atcgccgccg tgtaacaaga tataaattac
     3121 atttccttgt tatgcgtaat aaattctata tccggctcct gttgctatcc gcatttcata
     3181 aagtccgcct gtaccggcta aagatttatg atcgccaaag ttgccattaa tcgcattttt
     3241 tatccgtctt gctaccgttg cttttgcgat agggttcttt aaattctcaa gccattttga
     3301 aaaattatcg gtaataataa tttgattagt ggtttgctct ctcatcattg ccggcttctt
     3361 attctattta ttgcttattg tatccattaa gatacagtga gcaagggttt ttgccattta
     3421 cccactttta acccacttta cccactgtca ttttttcttt atttttcagt tagttataaa
     3481 aaaataatag tgaaaagtgg gtaaagtggg taaaaatcga aaagtttaca gaattttcat
     3541 caaggggaat tacgggcata aaaaagccgt caggcggttt acctaacggc attacaagcg
     3601 gtcatttttg gcggaaaatt tactaggcta ttttcaaatg atattgcggt aagctacctt
     3661 gcgaacattc ctctacaaaa tccgcccaca cttggagcag tttaaaacgt tgctctaggc
     3721 gttcgcctct atcataggcg gctttgattc ggtcgctgtt taaatgcgat aaggcaacct
     3781 cgattaaatc gctattgtag cctttctcat taagataagt ggaggcgatg gcccgcaagc
     3841 cgtgagccac taatttgccc ttgtagccca ttcgtttgat cgcaccgttg gcggtttgag
     3901 tattgacgtg cgtttgtggg ttcttcacgc tagggaataa atacgtttta ccgccactta
     3961 gctttttaat ctctcgcaaa agtgcgattg cttggcgtga gagtgtgatt ttatgctcaa
     4021 tgcctcgctt catattttcc gccggtatcg tccacagttt ggctttttcg tctatatccg
     4081 cccattttgc cttagccgct tcattcgggc gggtcattgt gagtaactgc cacagaatta
     4141 aatagcgtgt ctgtaaatga atttgggcgt tttgtaaggt gtataaaaac tcgcctaaat
     4201 cttccggctt aatggttttg aaatgttcaa ccgttgggct atcaaactct ttcgcaatat
     4261 tggcggtagg gttaaacggt atcatttcac ggtgtacggc aaacatcata atttcattat
     4321 gtttttgaat tgcccgtttt aacttctcta gtttgccctc gtcttggtat tgcttgaatg
     4381 ccttgattgc cattggtgcg gttatttgtg tgataggcat tcttccaaag tgcggcaaga
     4441 ggttattttt aattaaggcg attacatctt tttggtagtt gtctgaaaaa ttcttcttgg
     4501 tcttgcggtg ttccagccac gcccacgcta cattttcata agtgttgctg atttcgttgg
     4561 cctttgcctg ttcctgttgt tggcggtggg tttgagggtc gatattttga gccaataatg
     4621 ccctatattc ttctctaatt tctctcgctt gtgctaaaga aatatcaggg taagccccaa
     4681 tgcttaaatc attccgcttt tttgtgaacg gtctttcata cctaaaccgc cacaatttag
     4741 aatttgaggt aataacaagt agtaagccgt taccgtctct taatgggctg tcttccggtt
     4801 tcgcttttct tatttgggta tcgtttaacg gtgtgatttt tctagccata gtaaaccttt
     4861 aggagtataa agcctaaatc ttaggagtat gattttttgt ttgggagtac aaaactaaaa
     4921 gcgataaagc cttatttgaa aaggctctaa agtggtttta ggagtacgaa tttttggggg
     4981 tattccggcg tactcctaaa tatactccta aaatcttcgg atttgattgt atcgtatagg
     5041 tacgcaacgg acaataaaaa agccttgaaa cattgatttt caaggctttt taggtatcgg
     5101 ttgaaccgta taggattata atttggtgga gctgggggga tttgaacccc cgtccgaaat
     5161 ttctctacct tcagtactac atgtttagtc tagtctttaa tttcgcttat tcacagcgga
     5221 cagacacgca atgaataaac tagctttatt taatttagtg tttcgatcct aaagcggcgg
     5281 cgtccacacg atctcgtttt gggtgactta tctttgccct cgtcttacga gcggaagctg
     5341 aggagataag gctttaaagc aggttattaa gctgctaaag cgtattgttc gtcgtttgcg
     5401 actattattt tgcggtttgt ttacgaggcc taccgcacct cgacatgcac cttgggcttc
     5461 gccaatcccg tcgaatccaa aatcagcccc aaaagtagcg gtattctaaa ggaaagcggt
     5521 cgaatttgca aaaagttttg caagtggcgg aacttagcgg tattgaatag ctcgaaataa
     5581 aatcatacaa atcccacacc agatagattt aactctgtta taatgtaaac cttgctgaga
     5641 gtgaagagaa atagaatgaa aaaatttaac gagaacgaga ttgaagatgc tgaaattata
     5701 gatgccgagc cgattgatgt tgatgagata gacgaagaag aaacatcggt agaagcaatg
     5761 catccggctt tggtttccgg ctcaatgcct gtgccgcagg gcaatttgga tagctacatc
     5821 cgaatggcaa atcagtatcc gattctcacc gccgagcaag aaaaagaact ggcggagcgt
     5881 tattattatg atgaagacgt tgaggcggca aaacagctga tcctttccca tatgcggttt
     5941 gtgatccata ttgctcgtgg ctatttgggc tatggtttac cgctggcaga tctgatccaa
     6001 gagggtaata tcggcttgat gaaagcggta aaacggtttg acccgaatgt cggcgtgcgg
     6061 ttggtttctt ttgcggttca ttgggtgaaa gcggaaattc acgaatatgt gctgaaaaac
     6121 tggcgaattg tgaaagtggc aaccaccaaa gctcaacgta aattattctt taatttacgc
     6181 aaaaataaaa accgcttggc gtggtttaat gaagaagaga tcaaaaaagt tgccgatgat
     6241 ttaggggttt cagtggaaga agtacgagaa atggaatctc gaatgaccgg acaagattta
     6301 ggttttgacc tgcctgccgg tgatgacgat gaagacagct acgctccttc tatgtatatt
     6361 gaagatagca gctccaattt cgccgatgac ttggaagacg aacaacataa tgggcaggca
     6421 accgctcaac ttgcctatgc gttagccacc cttgatgaac gtagccaaga catcatcaaa
     6481 acccgctggt tagatgacaa taaagccaca ctgcaagatt tagccgataa atataacatc
     6541 tcggcagagc gggtaagaca gcttgaaaat gccgcattga agaaaatcaa ggaagcgatt
     6601 tcattagacg gctagaaatg cctacaagcg gtgatttttt tactcgctac gctcgcactt
     6661 cgtgccgtcg gcagagccaa cgttcaaacg caagcgtttg tgcaaaattt tacgcaaaaa
     6721 gcaccgcttg tattttgact aaaaatgagg atactatgat taacattacc gataaacaaa
     6781 ttgacccaac tttctaccag cgtctaccag cgagcagacg gctttattaa cgttgccaac
     6841 gctcatttaa aaaacattgc cccaaaccaa gtcagcaatg cgatgttgtt tggttgtgcc
     6901 agatttaacg cctatgttgc ggcaagcaag gcggaatata aacagcagtt ggccgattcc
     6961 agagaagaag ttattcaata ttttgtggag caatacaaag aaatgctcac tgcaaattta
     7021 gatgaatata tccaaaactt cgagcgatat attgaaggga aaaaggcgga ttaaccgcct
     7081 ttgttttgtg gtcaaacttg ttttacaaaa tcacttaaaa cttgattaat tctactttgc
     7141 caacctttac ctgaagctct aaaggcttca agaacgcttt tatcaagacg taacgaaacc
     7201 aattctttct ttgaaccagc tggtctgcca cgttttttca ttgcaattga aaactctgat
     7261 ggcgtaaccg ggcgttcatc gtcatctttt ccgtcccaaa taaaatcttg gcttgccgga
     7321 atagcttgaa tagccataag tagctgtttt ttctctaaat ttttattatt caaagtattg
     7381 ttgtaagtat tcctaatatg cctctctttc tgctttagat gctcgccgaa agctaattac
     7441 tctgatgtaa tcttcccttt ctgtatatgc aagtgataat acgagtaaac gtccaaatga
     7501 atatgcaaaa gattgtattc taaattcatt gttacgaata acttcaacat caaatcgata
     7561 gggcgatgag agaacttcat ctgcatcggc aaaatctaat ccgtgcttgg ctaaattgat
     7621 tttgcgttta gtttcgtccc aagtataa
//
LOCUS       DANLVT010000115         7519 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.115, whole genome shotgun sequence.
ACCESSION   DANLVT010000115 DANLVT010000000
VERSION     DANLVT010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7519)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7519)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7519
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.115"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            170..2626
                     /gene="thrA"
                     /locus_tag="PXC99_002084"
     CDS             170..2626
                     /gene="thrA"
                     /locus_tag="PXC99_002084"
                     /EC_number="1.1.1.3"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase I"
                     /protein_id="HDL5418505.1"
                     /translation="MRVLKFGGTSLANPERFMQAAEIIEKAHLADQAAGVLSAPAKIT
                     NHLVAIVDKAIAGESFQSNLSEATEIFHNIINGLYATNNHFAKEALLALVEAELNQIQ
                     QVAAEAAQTKSLSDKIAATIHCRGEKLSIAMMQAWFEAKGYEVTRIDPVEKLLAHGSY
                     LESSVDIAESTKRVDAGSIPKKNIVLMAGFTAGNEQGELVLLGRNGSDYSAACLAACL
                     KADVCEIWTDVDGVYTCDPRLVPDAVCLETMSYQEAMELSYFGAKVIHPRTIGPLVPL
                     NIPCLIKNTGNPDGKGTLIDGNVANDNLKVKGITNLDNVAMFNVSGSGMQGMVGMAAR
                     VFSTMSKAGISVILITQSSSEYSISFCVPAKSAEKALAALNTEFAQELSENLLDPIDI
                     IKDLSIVSVVGDGMRTAKGIAARFFSALAQANISIVAIAQGSSERSISAVVPLNKAIE
                     AVKATHKSLFNSKRVVDMFLVGVGGVGSELIEQVKQQKEFLAKKDIEIRVCALANSDK
                     MLLNENGLNLDNWKEDLEKAIQPSDFDVLLSFIKFHHVVNPVFVDCTSAQSVANLYAR
                     ALKEGFHVVTPNKKANTSGYDYYLEMRENARQSQHKFLYETNVGAGLPVIENLQNLLA
                     AGDEVEKFEGILSGSLSFIFGKLEEGLTLSQATLIAKEKGFTEPDPRDDLSGADVARK
                     LLILVRETGLPLEFEDIEIEGVLPKGFSEGMSRDEFLQALPSLDEEFSKRVEAAKAEG
                     KVLRYVGSITGDKCRVAIEAVDENHPLYKVKDGENALAFLTRYYNPIPLLLRGYGAGN
                     SVTAAGIFADILRTLQGGVN"
     gene            2626..3573
                     /gene="thrB"
                     /locus_tag="PXC99_002085"
     CDS             2626..3573
                     /gene="thrB"
                     /locus_tag="PXC99_002085"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HDL5418506.1"
                     /translation="MALRIYAPASSANISVGFDSLGAAISPIDGSLLGDVVQIEESEQ
                     QFELESAGYFVRKLPKEPQKNIVYQAYVLFSERLKLRNGSVKNLRLTLEKNMPIGSGL
                     GSSACSIVAALVALNKFHDEPFSKMELLEMMGELEGRISGSIHYDNVAPCYLGGLQLM
                     TQSLGNICQPLPFFDEWYWVLAYPGVEVSTAEARAILPKSYTRQDMIQQARYLGSFVH
                     ACHTHQDILAATMMKDLIAEPYREDLLPNFPAVRQGCKDLGALAVGISGSGPTMFAIA
                     PDLEHAQRLVSYLEKEYLQNNEGFIHICKVDNQGARELK"
     gene            complement(3688..5064)
                     /gene="cysS"
                     /locus_tag="PXC99_002086"
     CDS             complement(3688..5064)
                     /gene="cysS"
                     /locus_tag="PXC99_002086"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HDL5418507.1"
                     /translation="MLKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTF
                     VSFDVIARYLRYSGYNLRYVRNITDVDDKIIKRALENNETCDELVDRMIAEMHKDFDA
                     LNILRPDVEPRATKHIPEIIAMVEKLIHNGHAYVAADGDVMFDVESFQKYGALSRQNL
                     EQLQAGARVEIKSIKKNPMDFVLWKMSKAGEPSWESPWGNGRPGWHIECSAMNSKELG
                     EHFDIHGGGSDLMFPHHENEIAQSCCAHGGDYVNYWLHTGMLTIDKEKMSKSLGNFFS
                     IRHMLGLYDAESLRYFFLTAHYRSLLDYSIDNLDLARSALERLYTALRGCDVSGEAIG
                     EHYVEAFKTAMDDDFNTPGALAVLFEIARELNKLKTEDMAKANGLAVRLKELAGVLGL
                     LEQDPDAFLKGDANDDETAEIEALIKQRNEAKAAKNWAVADEVRDKLKAINIVLEDTP
                     NGTIWRKA"
     gene            5220..5729
                     /locus_tag="PXC99_002087"
     CDS             5220..5729
                     /locus_tag="PXC99_002087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL5418508.1"
                     /translation="MITLHTNFGDIKIELNFEKAPITAKNFEDYAKEGFYNGTIFHRV
                     IDGFMIQGGGMTAGMAEKPTKDPIQNEANNGLSNKRGTIAMARTSDPHSASSQFFINV
                     ADNTFLDYRSKEMFGRSVVQDWGYAVFGEVVEGMDVVDKIKGVKTGNKGFHQDVPVED
                     VVIESVSVA"
     gene            complement(5821..6750)
                     /locus_tag="PXC99_002088"
     CDS             complement(5821..6750)
                     /locus_tag="PXC99_002088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HDL5418509.1"
                     /translation="MEIALLLADKILQLTLMVLLGYLIVKTKLLKSEHSYPISVIGLY
                     IISPAMLITAFQVDYTTEILNGLYLAFLISVLLNGLLILLGWLLKRALKLDNIEQATA
                     IYSNSGNLIIPIVASLFGNEWVIYSTAFIVVQNVLFWSHLRLLICGKGNVPFRKMIFN
                     INIIAIVIGMMLFLLHIKLPATLANTLSTLGHMLGPLAMLVAGMLIAAIPFKEIITDK
                     RIYLVAFLRLIFIPLILLAVIKLGGFASWIENGKTVVMITFLATISPSAATATQMAVA
                     YGQDAKKASAIYGVTTLLCVFTMPLIIWLYQFL"
     gene            complement(6753..7511)
                     /gene="fdhD"
                     /locus_tag="PXC99_002089"
     CDS             complement(6753..7511)
                     /gene="fdhD"
                     /locus_tag="PXC99_002089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HDL5418510.1"
                     /translation="MKQKDDEENLISEVPVALVYNGISHTVMMATPANLEDFALGFSL
                     AEGILNAPSELYGLDVIEQENGVEIQLEISSRQFVALKDKRRSMAGRTGCGICGVEQL
                     EQVNQSCKIVKKNNRLQNVNPLILEDCLLQLENAQFLSKETGASHAAAFFTPDGKLLA
                     IREDVGRHVALDKLIGWYAKADFPIGFVFVTSRASFEMVQKCLAVGIEMLCAISATTE
                     MAVNMARENQFTLLAFARKGKATIYAGEERLALN"
BASE COUNT         2210 a         1609 c         1592 g         2108 t
ORIGIN      
        1 gattccgcca atgaattgtt ttaatatgat gacaacgatt attaccacca ttatgtcacc
       61 aacatagtgc gggttttaat tggctgaaat aatgaaagaa taaaccgaaa acccgctaca
      121 agcgggtttt tttgtataaa aatttacaaa taatttatca ggagtaacta tgcgagttct
      181 taaatttgga ggcacttctc ttgccaaccc tgaacgcttt atgcaagcgg cagagattat
      241 cgagaaagct catttggcag atcaagctgc cggcgtatta tccgccccag ccaaaattac
      301 caatcatctt gtcgctattg tagataaagc gattgccggt gaatcatttc aatctaacct
      361 ttctgaagct accgagattt tccacaacat cattaacggc ttatatgcta caaataatca
      421 ctttgctaaa gaagcactgt tagccttagt ggaagcggaa ttaaaccaaa ttcagcaagt
      481 ggctgcagaa gcagctcaaa ctaaatcgtt gtcagataaa attgctgcca ctattcactg
      541 ccgtggtgaa aaactctcta ttgcgatgat gcaagcgtgg ttcgaggcaa aaggctatga
      601 agtcactcgt atcgaccctg ttgaaaaatt attggctcac ggcagctatt tggaatcttc
      661 ggtcgatatt gccgaatcca ccaagcgagt tgatgcaggt tcaattccaa agaaaaatat
      721 cgtgctaatg gctggtttta ccgcaggtaa tgagcaaggc gaactggtgt tattagggcg
      781 taacggttca gattattctg ccgcttgttt ggcagcgtgt ttaaaagccg atgtttgtga
      841 aatctggacg gacgtagatg gcgtttacac ctgcgaccct cgtttggtgc ctgatgcagt
      901 atgcttagaa acaatgagct atcaagaggc aatggagctt tcctactttg gggcgaaagt
      961 gatccaccct cgcaccatcg ggccattagt gccgctcaat attccttgtt taatcaaaaa
     1021 taccggcaat ccggacggaa aaggcacatt aattgatggc aatgtggcaa acgataatct
     1081 caaagtaaaa gggattacca accttgataa cgtggcgatg ttcaacgttt caggttcagg
     1141 aatgcaggga atggtgggca tggctgcccg tgtgttctcg acgatgtcaa aagccggtat
     1201 ttcggtgatt ttaattaccc aatcatcatc agaatatagc atcagcttct gcgtgccggc
     1261 aaaatcggca gaaaaagcgt tagcggctct aaatactgaa tttgcacaag agttatctga
     1321 aaacttactt gacccgattg atattattaa agatttatcc attgtttcgg tagtgggtga
     1381 tggtatgcgt accgccaaag gaattgcggc tcgcttcttc tctgccctag cccaagccaa
     1441 catcagtatt gtggcaattg cacagggttc atctgagcgt tccatttctg ctgtcgtgcc
     1501 gttaaacaaa gcgattgaag cagtaaaagc aactcacaaa tcgctattta acagtaaacg
     1561 tgtggtggat atgtttttag tgggtgtagg cggtgtgggt agcgaactca tcgagcaagt
     1621 caaacaacaa aaggagtttt tggcaaagaa ggatattgag atccgtgtgt gtgctttagc
     1681 taattcagat aaaatgttac tcaacgaaaa cggcttaaat ttagacaact ggaaagaaga
     1741 tttagaaaaa gcaattcagc cgtcagactt tgatgtattg ctttctttca tcaaattcca
     1801 ccacgtggta aacccagtat ttgtagattg cacttcggca caatcggtgg cgaacctgta
     1861 cgcacgagcc ttaaaagagg gcttccacgt ggtaacacca aacaaaaaag ccaatacatc
     1921 aggttacgat tactacttag aaatgcgtga aaacgcccgc caaagccagc acaaattcct
     1981 ctacgaaact aatgtagggg caggtttacc ggtaattgaa aacttacaaa acctattagc
     2041 tgccggtgac gaagtagaga aatttgaagg gattttatcc ggctcgctct ctttcatttt
     2101 cggcaaatta gaagaaggtt taaccctttc gcaagcaact ttaatcgcca aagaaaaagg
     2161 ctttaccgag ccagatccac gagatgattt atccggtgca gatgttgctc gtaaactctt
     2221 aattcttgtt cgtgaaaccg gcttaccgct tgaatttgaa gatattgaaa ttgaaggcgt
     2281 attgccaaaa ggcttctcgg aaggaatgag tcgtgatgag tttttacaag ctctaccgtc
     2341 tttagacgaa gaattcagca agcgtgtaga agctgccaag gctgaaggca aagtgttgcg
     2401 ttatgtgggc tcgatcacag gtgataaatg ccgagttgcc attgaagccg tggacgaaaa
     2461 ccacccactt tacaaagtta aagacggcga aaatgccctt gcttttctca cacgttacta
     2521 caaccctatt ccattattat tgcgtgggta tggtgcgggc aatagcgtaa ccgctgccgg
     2581 tatctttgca gatattctgc gtactttaca aggaggagtg aactaatggc gttacgaatt
     2641 tatgccccag cttcaagtgc aaatattagt gtgggttttg actcattagg cgctgcaatc
     2701 tccccgattg acggctcttt gctcggcgat gtagttcaaa ttgaagagag tgaacaacaa
     2761 tttgagctag aaagtgcagg ttattttgta cgtaaattgc ccaaagaacc acaaaaaaac
     2821 attgtctatc aagcctatgt gctatttagc gaacgcttga aattacgtaa cggcagtgta
     2881 aaaaatttac gcttaacact tgaaaaaaat atgccgattg gctcagggct aggctcaagt
     2941 gcctgctcga ttgttgcagc attagtggca ctcaataaat tccacgatga accgttctcc
     3001 aaaatggaat tactggaaat gatgggcgaa ttggaaggca gaatttcagg ctcaatccac
     3061 tacgacaacg ttgccccttg ctatttaggt ggcctgcaat taatgacaca atcgctcggc
     3121 aatatttgcc aacctctgcc attctttgat gaatggtatt gggtgcttgc ctacccgggc
     3181 gtggaagtat caaccgccga agcccgtgct attttgccga aaagctatac tcgtcaagat
     3241 atgattcagc aagcccgcta cttaggatct ttcgtccatg cttgccatac acatcaagat
     3301 atcttggctg ctacaatgat gaaagaccta attgctgagc cttaccgtga agatttactg
     3361 ccgaactttc cggctgttcg tcaaggctgt aaagacttag gtgcgttagc ggttggtatt
     3421 tcaggttccg gtccgacaat gtttgcgata gcccctgatc tcgaacacgc tcaacgttta
     3481 gtgagctatt tagagaaaga atatctgcaa aacaacgaag gctttattca tatctgtaaa
     3541 gtcgataatc aaggagcaag agagctgaaa tagccctctc gaacaaccat atcactaaat
     3601 aacttaaagg actgactcca ataccacttg gagcagccct ttttgattaa ttttttgaaa
     3661 agtctatcac ttataaacaa tcgaaggcta tgccttacgc caaattgtgc cgtttggggt
     3721 gtcttcgagg acaatattta tcgctttgag cttatctcgc acttcatcgg caaccgccca
     3781 gtttttagcc gctttggctt cgttgcgttg tttgattaag gcttcgattt ctgccgtttc
     3841 atcgtcattc gcatcacctt ttaaaaacgc atcggggtct tgttccagta agcctagcac
     3901 gccggctaac tcttttaaac gaacggctaa accgttggct tttgccatat cttcggtttt
     3961 gagtttgttc aactcacggg caatttcaaa taacaccgct aatgcccccg gggtgttgaa
     4021 atcatcgtcc attgcggttt taaaggcttc tacatagtgt tctccgatgg cttcgcccga
     4081 cacatcacaa ccacgcagag cggtatataa acgctcaaga gccgaacggg ctaaatcaag
     4141 gttgtcaatg ctgtaatcta ataacgaacg gtaatgagcg gttaagaaga aataacgtaa
     4201 cgattcggca tcgtataagc ctaacatatg gcgaatgctg aagaaattgc ccaaagattt
     4261 cgacattttt tctttatcaa tggtaagcat tccagtgtgt aaccaataat tgacataatc
     4321 gccaccgtga gcacagcaag attgtgcaat ttcgttttcg tgatgcggga acattaaatc
     4381 cgagccaccg ccgtgaatat caaaatgttc gcccaactct ttgctattca ttgccgaaca
     4441 ttcaatatgc cagcccggtc tgccattgcc ccacgggctt tcccagcttg gctcaccggc
     4501 tttcgacatt ttccacaaga caaaatccat cgggtttttc ttgatggatt taatttcaac
     4561 ccttgcaccg gcttgtagtt gctctaaatt ttggcgggat aatgcaccat atttctggaa
     4621 cgattccaca tcaaacatca catcgccatc ggctgcgaca taagcgtgtc cgttgtgaat
     4681 cagtttttct accatcgcaa taatttcagg aatatgcttg gtggctcgtg gctcaacgtc
     4741 cgggcgaaga atgtttaacg catcaaaatc tttgtgcatt tcagcaatca ttctatccac
     4801 taattcatcg caagtttcgt tattttctaa cgcacgtttg atgattttgt cgtccacatc
     4861 ggtaatgtta cgcacatagc gtaaattgta gcctgaataa cgtaaataac gggcaatcac
     4921 atcgaaagag acaaaagtgc gaccgtgccc aaaatgacaa agatcgtaaa ccgtgacgcc
     4981 acagacgtac attcccacct gatttgggtt aatcggttta aattcttctt tttcacgttt
     5041 taaggtgtta taaattttga gcataaagtc ctcttgtgta acattcagta acaaatgggg
     5101 ctaagtatag cgaataagcg gtctgatttt gagatttttt tgcaatttgg cgtaaacttt
     5161 ttaataatag cgagcgaaat ttattttcca ttccattttt atttataaag gaacaaagaa
     5221 tgattacatt acataccaat ttcggtgaca ttaaaatcga attaaacttt gaaaaagccc
     5281 cgattaccgc taaaaacttt gaagattacg ctaaagaagg gttttataac ggcacgattt
     5341 tccaccgtgt gattgacggc tttatgattc aaggtggcgg aatgacggca ggtatggctg
     5401 aaaaaccgac aaaagatccg attcaaaacg aagcgaacaa cggtttaagc aacaagcgtg
     5461 gcacaatcgc aatggctcgc acttctgatc cgcattctgc ttcgtcacag tttttcatta
     5521 atgtggcgga taatactttc ttagattatc gctcaaaaga gatgttcggc agaagtgtag
     5581 tgcaagattg gggctatgca gtatttggcg aagtggttga aggtatggac gtggtcgata
     5641 aaatcaaagg cgtaaaaacc ggcaataaag gcttccacca agacgtgccg gttgaagatg
     5701 tggtgattga gtctgtaagc gttgcctaat tccgcaaatt agcctacaag cggttgattt
     5761 ttcacaattt tttgcatttc tcagcgttgc aaaaaagtag cagaaatcga ctgcttgttt
     5821 ttatagaaat tgatacagcc aaataatcag cggcattgta aacacacaaa gtaaagtggt
     5881 tacgccataa atcgcactgg cttttttggc atcttgcccg taagccaccg ccatttgggt
     5941 cgccgttgca gcagaagggc tgatggtggc taagaatgta atcattacca ccgtttttcc
     6001 attctctatc cagctcgcaa aaccgccgag tttaatcacc gctaacaaaa tcagcggaat
     6061 aaaaatcaag cggagaaaag ccaccaagta aatgcgttta tcggtaataa tctctttaaa
     6121 tggaattgct gcaattaaca tccctgccac aagcattgct aaaggcccta acatatgccc
     6181 taaagttgag agcgtgtttg caagcgtagc gggcagtttg atatgtagca aaaacaacat
     6241 cataccaatc acaatcgcaa taatgttgat attaaagatc atctttctaa acggcacatt
     6301 gcctttgcca caaatcagca gccgtaagtg agaccaaaac aacacatttt gcaccacaat
     6361 aaaagccgtt gaataaatca cccattcatt gccgaacagg gaggcaacaa tcggaataat
     6421 taagttgccg gagttggaat aaatagcggt ggcttgttct atgttgtcta atttcaacgc
     6481 tcttttgagc agccaaccaa gcagaattaa caagccgttt aataagacgg agattaaaaa
     6541 tgccagatac aagccgttta gtatttcggt ggtgtaatct acttgaaaag cagtaatcag
     6601 cattgccggg ctgataatgt aaagtccgat aaccgaaatc ggataactgt gctccgattt
     6661 gagtaattta gttttaacga tgaggtagcc gagcagcacc atcagggtta attgtagaat
     6721 tttatcggct aataaaaggg ctatttccat tatcaattaa gagcgagtct ctcttctcct
     6781 gcataaatgg tcgctttgcc tttgcgggca aaagcaagta aggtaaattg attttcacga
     6841 gccatattca ctgccatttc agtggtcgct gagatggcac acaacatttc aatgccaacg
     6901 gctaagcatt tctgcaccat ttcaaagctg gcacgactgg ttacaaacac aaatccaatc
     6961 ggaaaatcag ctttagcata ccaaccgatt aatttatcca acgccacgtg tctgcccaca
     7021 tcttcacgaa tggcaagcag ttttccatcc ggggtaaaaa atgcagcggc gtggcttgca
     7081 ccggtttctt tcgataagaa ttgagcattt tctagctgta ataaacaatc ctctaaaatc
     7141 agtggattga cgttctgcaa gcggttattt ttcttaacaa ttttgcaact ttgattaacc
     7201 tgctctaatt gctctacacc gcaaataccg caacctgttc tgcctgccat tgagcggcgt
     7261 ttatctttta atgcaacaaa ttggcggctc gatatttcaa gctgaatttc tactccattt
     7321 tcttgttcaa ttacatctaa accatataat tccgatgggg catttaaaat cccttccgcc
     7381 aatgagaatc ctaaagcgaa gtcctccaaa ttagccggtg ttgccatcat tacagtatga
     7441 gaaataccgt tatataccaa agcaaccggc acttctgaaa ttaaattttc ttcatcatct
     7501 ttttgtttaa tactattag
//
LOCUS       DANLVT010000116         7518 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.116, whole genome shotgun sequence.
ACCESSION   DANLVT010000116 DANLVT010000000
VERSION     DANLVT010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7518)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7518)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7518
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.116"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            164..682
                     /locus_tag="PXC99_002090"
     CDS             164..682
                     /locus_tag="PXC99_002090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein"
                     /protein_id="HDL5418511.1"
                     /translation="MQKKLFIAQIKQNLSELNVFSTDNIFLNSPYFSQQTGLVSVFIA
                     EIEKTVELLLNQTEVLYSEFYAEKLVKQVDALKNAVEKIQSKPESAQFHSSYQFSPNI
                     HRLAPNKRLQEYRKALRALNEKISWLVEQNLNTQNEATKQTLQNQITETEYRKMKCLK
                     AIEDLEQELLFK"
     gene            complement(686..759)
                     /locus_tag="PXC99_002091"
     tRNA            complement(686..759)
                     /locus_tag="PXC99_002091"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(725..727),aa:Cys,seq:gca)
     gene            complement(775..850)
                     /locus_tag="PXC99_002092"
     tRNA            complement(775..850)
                     /locus_tag="PXC99_002092"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(815..817),aa:Gly,seq:gcc)
     gene            complement(1060..2484)
                     /gene="lpdA"
                     /locus_tag="PXC99_002093"
     CDS             complement(1060..2484)
                     /gene="lpdA"
                     /locus_tag="PXC99_002093"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011272714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HDL5418512.1"
                     /translation="MSKEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYSTLGGI
                     CLNVGCIPSKALLHVAKVIEEAKNAVHNGVTFGEPTIDLDQVRAGKEAVVSKLTGGLA
                     GMAKARKVTVVEGLAAFTGPNTLVARDRDGNPTTITFDNAIIAAGSRPIQLPFIPHED
                     PRVWDSTDALKLKEVPKKLLIMGGGIIGLEMGTVYNALGSEVEVVEMFDQVIPAADKD
                     VVAIYTKQIEKKFKLMLETKVTAVEAKDDGIYVSMEGKACNDTKRYDAVLVAIGRVPN
                     GKLIDAGKAGVEVDERGFIRVDKQMRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEV
                     IAGMKHYFDPKVIPSIAYTEPEVAWVGKTEKECKQEGLNYEVAKFPWAASGRAIASEC
                     SEGMTKLIFDKDTHRVLGGAIVGSNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE
                     SVGLAAEVFEGSITDLPNAKAKKR"
     gene            complement(2684..4594)
                     /gene="aceF"
                     /locus_tag="PXC99_002094"
     CDS             complement(2684..4594)
                     /gene="aceF"
                     /locus_tag="PXC99_002094"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex
                     dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HDL5418513.1"
                     /translation="MSKQINVPDIGSDEVSVTEVMVKVGDTISVDQSIINVEGDKASM
                     EVPAPEAGVVKEVLVKVGDKVSTGSPMLILESADAAPAQEAPKAEAAPAAPVATTSAV
                     VEVNVPDIGGDEVNVTEIMVKVGDSVEVDQSIINVEGDKASMEVPAPVAGVVKEILIN
                     VGDKVSTGKLIMKFETASAATAQSTPVAEAAPAQASASAIKDVNVPDIGGDEVNVTEI
                     MVKVGDSVSEEQSLITVEGDKASMEVPAPFAGVVKEILVKSGDKVSTGSLIMKFEVAG
                     AAPAPAAAQAASAPAPAPQAAAPAKADAAPAGQNQSGLSQEQVVASAGYAHATPVIRR
                     LAREFGVNLDKVKGTGRKGRIVKEDIQAYVKTAVQVFEKQGGTAAAATGAANGAGLGL
                     LPWPKVDFSKFGEVEEVELSRINKISGANLHRNWVMIPHVTHFDRTDITELENFRKEQ
                     NKEAEKRKLDVKITPVVFIMKAVASALEAFPRFNSSISEDAQRLTLKKYINIGVAVDT
                     PNGLVVPVFKNVNKKGIIELSRELMEVSKKAREGKLTASDMQGGCFTISSLGGIGTTH
                     FTPIVNAPEVAILGVSKSEMQPIWNGKEFEPRLMLPLSLSFDHRVIDGADGARFLSYI
                     NSVLADIRRLVM"
     gene            complement(4798..7455)
                     /gene="aceE"
                     /locus_tag="PXC99_002095"
     CDS             complement(4798..7455)
                     /gene="aceE"
                     /locus_tag="PXC99_002095"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005628834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HDL5418514.1"
                     /translation="MSENLRNDVDPIETQDWLASLDSLIREEGLERAQFIIEQVISQA
                     RAGGVALPTGVTTDYVNTIPVSEQPAYPGDHKIERRIRSAVRWNAIAAVLRSQKKDLD
                     LGGHISTFQSAATMYEVCFNHFFKAPTEKDGGDLVFFQGHAAPGMYGRAFLEGRITAE
                     QMDNFRQEAFTDGLSSYPHPKLMPEFWQFSTVSMGLGPVNAIYQARFLKYLENRGLKD
                     TSAQKVYAFLGDGEMDEIESKGALSFAGREKLNNLIFTISCNLQRLDGPVNGNGKIVQ
                     ELEALFTGCGWEVIKVLWGSGWDKLLEKDTSGKLKQLMMEVLDGDYLTFKSKNGAYVR
                     EHFFGRYPETAALVADMTDDEIWALRRGAHDSEKLYAAYAKAQKSDKPVVILAHQVKG
                     YRIPEAESKNTAHQSKKMSLDSLKGFRDYFELPLTDEQVESLEYVRFPEGSEEYNYLH
                     GQRKALNGYVPVRKPKFTVDFKVPELSEFQALLDEQPRGISTTMAFSRVLNTLLKDKN
                     IGQQIVPIIADEARTFGMEGLFRQIGIYNPHGQNYVPSDRDLVAYYREAKDGQVLQEG
                     INELGATASWVAAATSYSVSNLPMIPFFIYYSMFGFQRVGDMMWLAGDQLARGFMIGG
                     TSGRTTLNGEGLQHEDGHSHIQAGVIPNCVTYDPAFAFEVAVIVQDGIRRMYGENQED
                     IFYYITTLNEITEQPAMPAGAEEGIRKGLYKFETVEGKGKGHVQLLSSGAIMRHVRAA
                     AQILANDYGITADVFSAPSFNELGRDGADVARWNLLHPTETPRVPYVAQVLQDLPTVA
                     STDYMKMYAEQIRAYVPSKHYHVLGTDGFGRSDSRANLREHFEVDERYVVVAALAQLA
                     KEGTVENKVVAEAITKFGLNVDRINPLYA"
BASE COUNT         2141 a         1691 c         1399 g         2287 t
ORIGIN      
        1 tagttcacat ttttgatatt taatttcttt tttgcctgtt tttcacgcac gaattgtaag
       61 aaattagtaa aaatcaaccg cttgtacgca aagtgttttg ctttaaaata gaagttatat
      121 gaaataaaat tcacttaaat tttctttatt gataacatca accatgcaaa aaaaactttt
      181 tatcgcccaa ataaaacaaa acctctcgga attaaatgta ttttcaacgg ataatatttt
      241 tctgaattca ccctatttct cacagcaaac cggtttggtg agtgtgttca ttgctgaaat
      301 tgaaaaaaca gttgagctat tattgaacca aactgaggtg ttatatagtg aattttacgc
      361 tgaaaaattg gttaaacaag ttgatgcatt aaagaatgcc gtagaaaaaa tccaaagtaa
      421 gccagaatca gctcaattcc attcttccta tcaattttct ccaaatattc atcgtttagc
      481 gcccaacaaa cgcttacaag aataccgtaa agcgttacgt gcattgaacg agaaaattag
      541 ctggttagtt gagcaaaatt taaatacgca aaatgaagca actaaacaaa ccctgcaaaa
      601 tcaaattaca gagacagaat atcgcaaaat gaaatgttta aaagcaattg aagatttaga
      661 acaagagttg ctatttaaat agtgatggag gcgtgtcccg gagtcgaacc gagctacatg
      721 gatttgcaat ccagtgcata accgctttgc taacacgcca taagatttgg aaattggagc
      781 gggaaacgag gctcgaactc gcgaccccga ccttggcaag gtcgtgctct accaactgag
      841 ctattcccgc atctgaattc ccacaacatt gcgctgtgga acgaggtgca ttttacggat
      901 ttatcatttt atgtcaatgc taaatttaac attctagatt caaatgctga aaaaaaactc
      961 actattcaat agtttagttt taaaaataat caagcggttg tattttgcaa aaaatttaca
     1021 aaatacaacc gcttattttt tagagattaa ataatctgat taacgctttt tggctttcgc
     1081 atttggtaag tctgtaattg aaccttcaaa tacttctgcc gctaatccta ccgattcgtg
     1141 taacgttggg tgagcatgaa tggttaatgc gatatcttca gcatcacagc ccatttcgat
     1201 tgcaagaccg atttcgccta ataattcgcc accattgcta ccaacaatcg caccacctaa
     1261 tacacggtga gtatctttat caaaaattaa cttggtcata ccttctgagc attcagaagc
     1321 aatcgcacga cctgaagcag cccaagggaa tttcgccact tcgtagttca agccttcttg
     1381 tttacactct ttctcagttt taccaaccca agccacttct ggttcagtat aagcgatgga
     1441 cggaatgact ttcggatcga agtaatgttt cattcctgca atcacttctg ctgccacgtg
     1501 tccctcgtgt acacctttgt gagctaacat cggctggccg acaatatcac caatagcaaa
     1561 gatgtgtggc acattggtac gcatttgttt atctacacga ataaagccac gctcatctac
     1621 ttccactcca gctttaccgg catcaattaa tttaccgttt ggcacacgtc cgatagcgac
     1681 taataccgca tcataacgtt tagtatcgtt gcaagcctta ccttccattg atacatagat
     1741 accgtcatct ttagcttcta ctgcggttac tttggtttca agcattagct tgaatttttt
     1801 ctcgatttgt ttggtgtaaa tcgctacaac atctttatct gcagcaggaa ttacttggtc
     1861 gaacatttca accacttcca cttctgaacc aagcgcgtta tataccgttc ccatttctaa
     1921 accgataata ccaccaccca taataaggag ttttttcggt acttctttta atttaagagc
     1981 atcggttgaa tcccaaactc gtgggtcttc gtgtggaata aatggtagtt gaatcggacg
     2041 agaacctgct gcgataatcg cattatcgaa cgtgatagtt gtaggattgc cgtcacgatc
     2101 acgagcgact aacgtattcg gaccagtaaa tgcagccaag ccttctacta ctgtcacttt
     2161 acgagcctta gccattcctg ctaagccacc ggttaatttt gaaacaacgg cttctttacc
     2221 agcacgtacc tgatctaaat caatcgttgg ctcaccaaag gtcacaccgt tgtgtactgc
     2281 atttttagct tcttcaatta cttttgcaac gtgtaataat gctttagaag ggatacaacc
     2341 tacgtttaag caaataccac ctaaggttga ataacgctca acaattactg tttctaagcc
     2401 taagtcggca caacggaatg ccgctgagta acctgctgga cctgcaccaa gtacgacaac
     2461 ttgggtttta atttctttgc tcatagtttt tcctcttttt attccccccc tttagcaaag
     2521 aggggtaagg gagatttggc agaatataaa gcgaagtgag agagcaatca atcaaacaca
     2581 aatttctacc aaataattta ttctcttcgt aaattacgtc tatcaaatct ccccctaccc
     2641 ctcttttcta aagagggact tttttaggag gagctttacc gaattacatc actaaacgac
     2701 gaatatctgc caacacgcta ttaatatagc ttaagaatct cgcaccatca gcaccatcga
     2761 tcacacggtg gtcgaatgat aatgaaagcg gaagcattaa gcgtggttca aactctttgc
     2821 cattccaaat cggttgcatt tcagatttag acacacctaa aatagccact tccggtgcat
     2881 tcacgattgg cgtaaagtgc gttgtaccaa taccgcctaa acttgaaatt gtgaaacagc
     2941 caccttgcat atcagatgct gtcaatttac cttcacgggc ttttttcgag acttccatta
     3001 attcgcgaga aagttcgata atgccttttt tgttcacatt tttgaacacc ggcaccacta
     3061 aaccgtttgg cgtatcaacc gcaaccccga tattgatgta ttttttcaag gttaaacgtt
     3121 gtgcatcttc agaaattgag ctgttgaaac gagggaaggc ttctaatgca cttgccactg
     3181 ctttcataat gaagaccaca ggggtaattt tcacgtctaa tttacgtttt tccgcttctt
     3241 tattttgctc tttacggaag ttttctaact cggtaatgtc tgtgcgatcg aaatgtgtaa
     3301 cgtgaggaat cattacccag ttacggtgta agttcgcacc ggaaatctta ttgatacggc
     3361 ttaattcaac ttcttcaact tcaccaaact tgctgaaatc tactttcggc cacggtaata
     3421 aacctaagcc tgcaccgttt gccgcacctg ttgctgccgc tgctgttccg ccttgttttt
     3481 caaatacttg aacagccgtt ttaacgtatg cttgaatatc ttctttaacg atacggcctt
     3541 tacgacctgt accttttact ttgtctaggt ttacaccaaa ctcacgagct aaacggcgaa
     3601 ttaccggtgt tgcgtgtgca tagccagctg aagccaccac ttgttcttgg cttaaacctg
     3661 attggttttg acctgccgga gctgcgtcag ctttcgccgg agctgctgct tgtggagcag
     3721 gagcaggagc tgaagccgct tgagcagccg ccggagccgg tgccgcaccc gctacttcaa
     3781 atttcataat taatgaaccg gttgaaactt tatcacctga tttcactaaa atttctttca
     3841 ccacaccggc aaatggagcc ggaacttcca ttgaagcttt atcaccttca accgtgatta
     3901 aagattgttc ttctgaaaca gaatcaccca ctttaaccat aatttcagtt acgtttactt
     3961 catcaccacc gatgtccggt acatttacat ctttaatcgc tgatgccgaa gcttgagctg
     4021 gagcagcttc cgcaaccggt gtagattgtg ctgtagctgc ggaagccgtt tcaaatttca
     4081 taatcaattt accagttgaa actttgtcac ccacattgat taagatttct tttactacgc
     4141 cggcaaccgg tgcaggcact tccattgagg ctttatcacc ttcaacgttg atgatagatt
     4201 gatccacttc aacgctatca cctactttaa ccataatttc ggttacgtta acttcatcgc
     4261 caccgatatc aggtacattt acttcaacaa cggctgaagt tgttgctact ggagcagcag
     4321 gagctgcttc tgcttttggt gcttcttgag caggagcagc atctgctgac tctaaaatta
     4381 acattggtga accggttgaa actttatcac ccactttcac taaaacttct tttaccacac
     4441 ctgcttcagg agccggcact tccatagagg ctttatcgcc ttctacgtta ataattgatt
     4501 gatctactga aatagtatca ccaactttta ccatcacttc agtcacactg acttcatccg
     4561 aaccgatgtc cggcacatta atttgttttg acattttgaa atccttcttg agttaccccc
     4621 tctcccattg tgggagggac agatttttct ttgtaagaag aaaaatcagg gagaagggaa
     4681 tgcaagcggt tgattttctc aacatttttg caaataaaac taataccctc tctgctaaaa
     4741 gtttctaaac gaaaccttta gctgtctctc tcccatcaag ggagagagta ttagaaatta
     4801 cgcatataat gggttaatac gatctacatt taagccgaat ttagtaatag cttccgcaac
     4861 cactttgttt tcaactgtac cttctttcgc taattgagcg agggctgcaa ctactacata
     4921 acgctcatca acttcgaagt gttcacgtaa gtttgcacgg ctgtctgaac gaccgaaacc
     4981 gtctgtacct aacacgtgat agtgtttact tggtacataa gcacggattt gctctgcgta
     5041 cattttcata tagtcggttg aagcaacagt cggtaaatct tgtaacactt gagcaacgta
     5101 cggtacacgt ggtgtttcag ttgggtgtaa taagttccaa cgagccacat ctgctccatc
     5161 acgacctaat tcattgaatg atggtgctga gaatacatct gctgtaatgc cgtagtcatt
     5221 cgcgagaatt tgtgcagctg cacgcacgtg acgcataatt gcacctgagc ttaataattg
     5281 tacgtgacct ttacctttac cctcaacggt ttcaaattta tataaacctt tacggatacc
     5341 ttcttccgca cctgccggca ttgccggctg ttcggtaatt tcatttaagg tagtaatgta
     5401 gtagaagata tcttcttggt tttcaccata catacgacga ataccgtctt gaacaataac
     5461 cgcaacctca aaggcaaatg cagggtcata agtgacgcag ttcgggatta cacctgcttg
     5521 aatatggcta tgaccatctt cgtgttgtaa accttcaccg tttaatgttg tacgacctga
     5581 agtaccacca atcataaagc cacgagctaa ttggtcaccg gctaaccaca tcatatcgcc
     5641 tacacgttgg aaaccaaaca ttgagtagta gatgaagaat gggatcatcg gtaagttgct
     5701 aacagaataa gaagtcgctg ctgccaccca agaggctgtt gcacctaact cattgatacc
     5761 ttcttgtaac acttggccat cttttgcttc acggtagtaa gctactaaat cacggtctga
     5821 cggtacatag ttttgaccat gtgggttata aataccgatt tgacggaata aaccttccat
     5881 accgaaagta cgggcttcgt ccgcaataat aggtacgatt tgctgaccga tatttttatc
     5941 tttcaataaa gtattcaata cacgagagaa cgccattgtg gttgaaatac cacgtggttg
     6001 ctcatccaat aatgcttgga attcgcttaa ttcaggcact ttgaaatcaa ccgtaaattt
     6061 cggtttacgt acaggcacat aaccgtttaa ggctttacgt tgtccgtgta agtagttgta
     6121 ctcttcagaa ccttcaggga atcttacata ctctaggctt tctacttgct catcggttaa
     6181 tggtagctcg aagtagtcac ggaagccttt taagctgtct aatgacattt ttttcgattg
     6241 gtgagcagta tttttacttt ccgcttcagg aatacggtag cctttcactt ggtgagctaa
     6301 aattacaact ggtttgtccg atttttgtgc ttttgcatag gctgcataaa gtttttcaga
     6361 atcgtgtgca ccacggcgta atgcccaaat ttcatcgtct gtcatatcag caactaatgc
     6421 tgcagtttca gggtaacgac cgaagaagtg ttcacgaacg taagcaccat ttttggattt
     6481 gaaggttaaa tagtcaccat caagcacttc catcattaac tgtttaagtt tgcctgaagt
     6541 atctttttca agcagtttat cccaaccact accccataac actttaatca cttcccagcc
     6601 acaaccggta aagagtgctt ctaattcttg cacgattttg ccgttaccgt taaccggacc
     6661 gtctaaacgt tgtaagttac agctaatagt gaagattaag ttatttaatt tttcacgacc
     6721 ggcgaatgat aatgcacctt tagattcgat ttcatccatt tcgccatcgc ctaagaatgc
     6781 atatactttt tgagccgaag tatcttttag accacggttt tctaaatatt ttaagaaacg
     6841 agcttggtaa atagcattta ccggtcctaa acccatagat acggtagaga attgccaaaa
     6901 ttcaggcatt aatttagggt gtgggtaaga agataaaccg tctgtaaatg cttcttgacg
     6961 gaagttatcc atttgttctg cggtaatacg accttctaag aacgcacgac catacatacc
     7021 cggtgctgcg tggccttgga agaacactaa atcaccacca tctttttcgg ttggtgcttt
     7081 gaaaaagtgg ttaaaacaca cttcatacat agttgccgca gattggaaag ttgaaatatg
     7141 accacctaag tcaagatctt tcttctggct acgaagtact gccgcaatcg cattccaacg
     7201 taccgcagaa cgaatacgac gttcgatttt atgatcaccc ggataagctg gctgctcgga
     7261 aacagggata gtattgacat aatctgttgt tacgcctgtt ggtaatgcca cgccacctgc
     7321 acgagcttgg ctaataactt gttcaatgat aaattgagcg cgctctaaac cttcttcacg
     7381 aattaatgaa tcgagtgatg ctaaccaatc ctgagtttcg attggatcta cgtcatttct
     7441 taagttctct gacatagtat tcttccttat aaattaacga ttgaggtgat aaataacaaa
     7501 attttaacaa attttgtt
//
LOCUS       DANLVT010000117         7518 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.117, whole genome shotgun sequence.
ACCESSION   DANLVT010000117 DANLVT010000000
VERSION     DANLVT010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7518)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7518)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7518
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.117"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            67..2214
                     /locus_tag="PXC99_002096"
     CDS             67..2214
                     /locus_tag="PXC99_002096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL5418515.1"
                     /translation="MKRLRYSYLALILGSALPLSAYADGYLSNDNIRQFDARFNFFLA
                     NPLPAPIAKADGRGEAIENLVVKYASDYLNDIYLKEDVIRFRRWQWQDLYTSLDLKTK
                     QKPDYLNTYRLQAEAYFINKQYQEALSQLDQILRRNPNDVHAMAMSVVASRVLENPNT
                     EAERLLALYQISPSIAQKVQQYLHFTDTMLAASYGSEPQTTMIPDTIAVFGQSPNPDG
                     TPSKGLLQRLEKTKEMAEKFPNAKIILSGGPVRYIYAEADVMKKWLIENGVDESRLLL
                     DDVARDTPGNAVGIIDFMKEYGGRKVLGIGTILHLPRAMSVLKSYADSIGYELEIDSA
                     GGGSPPNEKNKKGEALYTFVNVARAMGLFTLGDFENLLAKEQAEKEQREALEKAQQNY
                     LEKLVAERDQAVKNAENSANELEVARQALETAKQAHQQAEEELNKELSKTQEQLKQST
                     EALSRLIIKQNNPFSEHYVVQLNLMEQATYDLYRRLAEIEHTQDWNLWLSDSLSKYRL
                     KNRSTEDYHLLHIGLDHQVSHNWSIGGVFGISQGQIENRTHKVKGTSAGIYAGYRPTS
                     GLFWTNFFNYSHFTNQSGVTKRDNNAYSLSSEIGRNIVMSHQWQITPKLQLGWAKAGS
                     ARMFWAGTGLRLGKVIELNAIKLKPYADISYRFRNRHIDTLDSLSDRHRNVISIGIQA
                     VGNRHYFAIEGSMLHGDALKRSYGLHANYHYQW"
     gene            2227..3345
                     /locus_tag="PXC99_002097"
     CDS             2227..3345
                     /locus_tag="PXC99_002097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL5418516.1"
                     /translation="MKKIKTTLSALALSLSLISVNSWAIPADYLSQDNISQYDKAFNF
                     VLAKVLPAPKGKEDGRGAPIEHLVIQYAPDYVDDPYLKEDVLNFRRWYWQAMYASLDQ
                     KVKEKPTYLNTYRLQAEAYFVNKEYREALSQLDQILRQNPRDIHALAMTVLASRVLED
                     TEQETARLSALKQLAPEVAQRMTDFFAFTEQTLAASYGNEPQTAMIPDTIAVFGSTPN
                     KDGTPSPLLLDRLQKTKEMAQKFPQAKIIVSGGAVKTEFAEADVMAKWLSENGIEKDR
                     LLLDPVARDTPGNAVGIIKLMQTYNGKKVLGIGTLQHIPRATAVLKGYAQHIGYPIEM
                     DSVGGGKPATPGKAKIEALYTYVNVARSMGLFELGDFK"
     gene            complement(3406..4668)
                     /gene="rho"
                     /locus_tag="PXC99_002098"
     CDS             complement(3406..4668)
                     /gene="rho"
                     /locus_tag="PXC99_002098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017492510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HDL5418517.1"
                     /translation="MHLTQLKNTPVSKLVEMGENQMGLENLARLRKQDIVFAILKQHA
                     KSGEDIFGQGVLEILPDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKI
                     RPPKEGERYFALLKVDSVNDDKPEASRSKILFENLTPLHANSRLKMERGNGSKEDLTA
                     RILDLAAPIGKGQRALIVAPPKAGKTVLLQNIAQSITHNHPECELIVLLIDERPEEVT
                     EMQRTVRGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYN
                     TVTPVSGKILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFE
                     EFKGTGNMELHLSRRIAERRIFPAIDFNRSGTRKDDLLMAADELQKTWMLRKVLNPMD
                     EVDAIEWLIDKLMMAKTNEEFFEIMKRS"
     gene            complement(4854..5801)
                     /gene="cysK"
                     /locus_tag="PXC99_002099"
     CDS             complement(4854..5801)
                     /gene="cysK"
                     /locus_tag="PXC99_002099"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HDL5418518.1"
                     /translation="MTIYADNSYSIGNTPLVRLKNFGNGNIVVKVEGRNPSFSVKCRI
                     GANMVWQAEKDGILTKDKEIVDATSGNTGIALAYVAAARGYKLTLTMPETMSTERKRL
                     LRGLGVNLVLTEGAKGMKGAIAKAEEIAASDPDRYVTLKQFENPANPAIHQQTTGPEI
                     WDATEGKIDVLVAGVGTGGTITGVSRAIKQDKGKQIISVAVEPSESPVITQTLNGEEV
                     KPGPHKIQGIGAGFIPKNLDLSLLDRVEQVSSEEAITTARRLMAEEGILGGISSGAAV
                     AAADRIAKLPEFADKLIVVILPSASERYLSTLLFEGIEA"
     gene            complement(5975..7471)
                     /gene="pepA"
                     /locus_tag="PXC99_002100"
     CDS             complement(5975..7471)
                     /gene="pepA"
                     /locus_tag="PXC99_002100"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HDL5418519.1"
                     /translation="MEFSVKNGSVEKQRTACLVVGVYEPRRLCSAAEQLDKLSNGYIS
                     TLLRRGDLEGKAGQTLLLHNVPNVLADRVLLVGCGKERELTERQYKQIIQKSVQTINE
                     TGSMEAVSFLTELHVKGRTPYWNVRFAVEAIQEQLYAYNDFKSIKPEVRRELRRVIFN
                     VAHRKDLPDAERALEHGKAVALGISHAKNVANCPPNVCNPHYLAELAKGLAYDYPAIS
                     TTIVDEKQMAELGMNAYLAVSRASENEAFLSVIEYKGNPNADAKPIILVGKGMTFDSG
                     GLSIKPAEAMDEMKYDMCGAATVYGTIKAIAEMKLPLNVIGLLAGCENAVDGKAYRPG
                     DILTTMSGLTVEVLNTDAEGRLVLCDALSYVERFEPELVIDIATLTGACMIALGNHNS
                     GLMSPHNGLANELLAAAEQADDKAWRLPLGEEYQEQLKSNFADLANIGGRLGGACTAG
                     QFLSNFTKKYTWAHLDIAGTAWKSGAAKGATGRPVSLLTQFLINKAQV"
BASE COUNT         2159 a         1512 c         1625 g         2222 t
ORIGIN      
        1 tcaactttgt tggttagatg taaaaagtta taaatacttc ttcacccaat ataaggagaa
       61 atcataatga aacgcttgcg ttattcttat cttgctttga tattaggttc agccttacct
      121 ttatcggctt atgctgacgg ttatttaagt aacgataata ttcggcaatt tgatgcccgt
      181 tttaattttt tcctcgcaaa tccactacct gcgcctattg caaaagcaga tgggcgtggt
      241 gaagcgattg agaatttggt ggtgaaatat gcatcagatt atcttaatga tatctatctt
      301 aaagaggatg ttattcgttt tcgccgttgg cagtggcaag atctctatac gtcattggat
      361 ttaaaaacga aacaaaagcc cgattattta aatacttacc gattacaggc ggaagcgtac
      421 tttatcaata agcaatacca agaagcatta tctcaactgg atcaaattct gcggcgtaac
      481 cctaatgatg ttcatgcaat ggcaatgagt gtggttgcaa gtcgggtatt ggaaaatcct
      541 aatactgaag ccgagcgttt attagcgctt tatcaaatct ctccaagtat tgcgcaaaag
      601 gtgcagcaat atctacattt tacagacact atgcttgctg ccagctatgg tagtgagcct
      661 caaacaacaa tgatccccga caccatagcg gtatttgggc aatcgcctaa cccagacggt
      721 actccaagca agggattatt gcaacgtctt gagaaaacca aagaaatggc agagaaattt
      781 ccgaatgcaa aaattatttt aagtggtgga cctgttcgtt atatctatgc agaagcggat
      841 gtaatgaaaa aatggttgat agagaatggc gttgatgaaa gcagactgtt gcttgatgat
      901 gtggcacgag atactccggg aaatgctgtc ggtatcattg attttatgaa ggaatatgga
      961 ggtagaaaag tattggggat cggtacgatc ttacatttac cgagagcaat gtctgtattg
     1021 aaaagctatg cggattccat tggatatgaa ttggaaattg attctgccgg aggcggttct
     1081 cctcctaatg aaaaaaataa aaaaggtgaa gctctttata catttgttaa tgttgctcgt
     1141 gcaatggggt tatttacctt gggcgatttt gagaatttgc ttgccaaaga acaagctgaa
     1201 aaagaacaaa gagaagcgtt ggaaaaagca cagcagaatt atttagaaaa attggtagct
     1261 gagcgagatc aagcagtaaa aaatgcagaa aattctgcaa atgagctgga agtagccaga
     1321 caggcgttag aaacagcaaa acaggctcat cagcaagctg aagaggaatt gaataaagaa
     1381 cttagtaaaa cgcaagagca gttaaaacag agtacggaag cccttagtcg tttaataata
     1441 aagcagaaca atcctttttc cgagcattat gttgtacagc ttaatttgat ggaacaagca
     1501 acttatgatc tgtaccgtag gttagcagaa atagaacata cacaagattg gaatttatgg
     1561 ctttcggata gtctatccaa atatcgttta aaaaatcgtt caaccgaaga ctatcactta
     1621 ttacatatcg ggctagatca tcaggtttcc cataattggt ctattggtgg agtatttggt
     1681 atcagtcagg ggcaaattga gaataggacg cataaagtga aagggacatc tgctggtatt
     1741 tatgctggtt atcgtcctac aagtggtctg ttttggacaa atttttttaa ttacagtcat
     1801 tttactaatc aatctggtgt aacaaaacga gataataatg catacagtct gagtagtgaa
     1861 attggaagaa atatcgtgat gagtcatcaa tggcaaatta cgccaaagct gcaattaggc
     1921 tgggcaaaag ctggatcagc acgaatgttt tgggctggga cagggctacg tttaggaaaa
     1981 gtgattgaac tcaatgcaat caaacttaaa ccttatgctg atattagcta tcgttttcga
     2041 aatcgtcata ttgatacctt agatagttta tctgatcgtc atcggaatgt aatcagtatt
     2101 gggatacaag cagttggaaa tcgccattat tttgcaatcg aaggatcaat gttacacggg
     2161 gatgcattga agcgttcata cggattacac gcaaattatc actatcaatg gtaaatagga
     2221 gcctctatga aaaaaatcaa aacaaccctt tctgcccttg ctttaagcct ttctttgata
     2281 agtgtaaata gctgggcgat accagctgat tatttgagcc aagacaatat cagtcaatat
     2341 gataaggcgt ttaactttgt attagcaaaa gtactgcctg caccaaaagg taaagaagat
     2401 ggtcgaggag cgccgattga gcatttagtt attcaatatg cgccagacta tgttgatgac
     2461 ccttatctaa aagaggatgt gctgaatttc cgccgttggt attggcaagc gatgtatgct
     2521 tcgcttgatc agaaagttaa agagaagccg acctacctta acacttaccg tttacaagca
     2581 gaggcgtatt tcgtcaataa agagtatcgg gaagcacttt ctcagctcga ccaaattttg
     2641 cgccaaaacc cccgtgatat tcacgctctt gcgatgacag tattagcttc aagggtgcta
     2701 gaagatactg aacaagaaac ggctcgtctt tctgcactga aacagcttgc tcccgaagtc
     2761 gcacaacgaa tgacagactt ttttgccttt accgaacaaa cgctggcggc aagctacggt
     2821 aatgaaccac agacagcaat gatccctgat acgattgccg tttttggttc tacgccaaac
     2881 aaagacggca caccttcgcc gctgttgtta gatcgattac agaaaaccaa agagatggca
     2941 caaaaatttc cgcaagcaaa aattatcgtc agtggcggtg ctgtgaaaac ggaatttgct
     3001 gaggctgatg tgatggcaaa atggcttagc gaaaatggta ttgaaaaaga ccgtttgcta
     3061 cttgatcctg ttgccagaga taccccggga aatgcggttg ggattatcaa gctgatgcaa
     3121 acttataatg gcaagaaagt attaggtatc ggtacgttac aacatatccc tcgtgcaaca
     3181 gcggttctca aaggttatgc acagcacatt ggttatccga ttgagatgga ttccgttggt
     3241 ggtggcaagc cggcaacacc gggaaaagcc aaaatcgagg cactttatac ttatgtaaat
     3301 gtggcgagat caatggggtt gtttgagttg ggggatttta agtagttact ttattgacag
     3361 ctgctattga taaaaatccc gcgttaagcg ggattttttt atgttctacg aacgtttcat
     3421 aatctcgaaa aactcttcgt tagtttttgc catcattaat ttgtcgatta gccattcgat
     3481 agcatctact tcgtccattg ggttgaggac tttgcgtaac atccaagttt tttggagttc
     3541 gtctgctgcc attaagaggt catctttacg agtacctgag cggttgaagt caatagccgg
     3601 gaagatacgg cgttcagcaa tacggcgtga gaggtgtaat tccatattac ccgtaccttt
     3661 gaactcctcg aaaatcactt cgtccatttt tgatccggta tccacaagtg cggttgcgat
     3721 aatggttaag ctgccacctt cttccacatt acgggctgca ccgaagaaac gttttggacg
     3781 atgtaaggcg ttagcgtcca caccaccgga aaggattttg ccggaaaccg gggtaacggt
     3841 gttgtaggca cgggctaaac gagtgatgga gtctaataaa atcaccacat cttttttatg
     3901 ctctaccgag cgttttgctt tctcgattac catctccgca acttgaacgt ggcgggttgc
     3961 cggttcatca aaggttgagg caattacttc accacgtacg gtgcgttgca tctctgttac
     4021 ttcttccgga cgctcatcaa ttaataatac gataagctca cattcaggat gattatgggt
     4081 gatgctttgt gcaatatttt gcagtaacac ggttttacca gcttttggcg gggcaacaat
     4141 taacgctcgc tgacctttac cgattggggc ggctaaatct aaaatacgag cggttaaatc
     4201 ttcttttgat ccattgccac gctccatttt taagcgagaa ttggcgtgca gaggggttaa
     4261 gttttcaaag agaattttac tgcgagaggc ttccggtttg tcatcattaa ctgaatcaac
     4321 tttcagtagg gcaaaatagc gttctccctc ttttggtggg cgaattttac cttctatttt
     4381 atcgccagtt tgtaagttaa aacggcggat ttggcttgga gaaacataaa tatcatcagg
     4441 gccggctaaa tatgagctat ctgatgagcg gaggaaaccg aagccgtccg gtagaatttc
     4501 aagcacgcct tgcccgaaaa tgtcttcacc gctttttgcg tgttgtttaa gaatagcaaa
     4561 tacgatgtct tgtttacgta aacgagccag attttctaag cccatttgat tttcacccat
     4621 ttccacaagc tttgaaacag gggtgttttt aagttgagta agatgcataa tttgaatgta
     4681 aaattgtgat taattaagat tggatttgtt gatattgatt agatacggcc aaccgtaaag
     4741 atgtggcgaa gaataacgca ataggagaca aattgcaaat tttttataaa aaataaccgc
     4801 ttgtttgcaa taaaaatgcc gacatcagcc ggcattttta tattaattta atattacgct
     4861 tcaatccctt caaacagtag cgtacttaaa taacgctctg aggctgaagg cagaatcact
     4921 acaattaatt tatcggcaaa ttcaggtagt ttagcgatgc gatctgcggc agcaacggca
     4981 gcacctgatg aaataccgcc taaaatgcct tcttctgcca ttaaacggcg tgcggttgta
     5041 atcgcttctt cgcttgaaac ttgttcaaca cggtcaagca gtgataaatc taagtttttc
     5101 ggaataaagc ctgcaccaat gccttgaatt ttgtgcgggc ccggtttgac ttcttcaccg
     5161 tttaaagttt gcgtaatgac cggcgattca ctcggttcta ccgccactga aataatttgc
     5221 ttgcctttat cttgcttaat agcacgggaa acaccggtaa tagtgccacc tgttcctacg
     5281 cctgccacta atacatcaat tttaccttca gttgcatccc aaatttcagg accggtagtt
     5341 tgttggtgaa ttgccgggtt tgccgggttt tcaaactgtt ttaaggtaac atagcgatct
     5401 gggtcggaag ccgcgatttc ttcagctttc gcaatcgctc ctttcattcc ttttgcccct
     5461 tcggttaaga ctaaatttac tcctaagcca cgcaataagc gtttacgctc ggtactcatt
     5521 gtttccggca ttgtgagcgt taatttataa ccacgagcgg ctgctacata agccaaggca
     5581 attccagtgt taccgctggt tgcatctaca atttctttgt ctttggttag aataccgtct
     5641 ttctctgctt gccacaccat attcgcacca atacggcatt tcacgctaaa acttgggtta
     5701 cgcccttcca cttttaccac aatattgccg ttgccaaaat tctttaaacg caccagcggg
     5761 gtattgccga ttgagtatga gttgtctgca tagatagtca tagtgatatt ccttaataag
     5821 tattgagatt gggatttatc atacttattt ttaatcgctt ttctagtagc tggaatttat
     5881 ttgatataac taaaaagaat ataggggcgt atgaagagga tcggtctgat tttctttttg
     5941 caaaaactcg ataaaatcag accgcttgtg agagttagac ctgggcttta ttgatcaaaa
     6001 attgtgttag taaggatacc ggtctgccgg tcgccccttt ggctgcccca gatttccaag
     6061 ccgtgccggc aatatctaga tgcgcccaag tatatttctt tgtaaagtta gagaggaatt
     6121 gaccggcagt acaggctccg cctaaacgtc cgccgatatt agcaagatca gcaaagttag
     6181 attttaactg ttcttgatat tcttccccta aaggtaaacg ccacgctttg tcatcggctt
     6241 gctctgcggc agctaagagt tcgtttgcta aaccgttatg aggtgacatc agcccgctgt
     6301 tatgattacc taaggcaatc atgcaagcac cagttagggt agcaatatca atcactaatt
     6361 ccggttcaaa acgttctaca tagctgagag catcacatag cactaaacgt ccttctgcat
     6421 cggtgttgag tacctcaacg gttaaaccag acattgtagt gagaatatcc cccggtcgat
     6481 aggctttgcc atcaaccgca ttttcacagc cggcgagtaa gccgataaca ttgagtggta
     6541 atttcatctc ggcaattgct ttgattgtac cgtaaacagt agcagctccg cacatatcgt
     6601 atttcatttc gtccatcgcc tccgcaggtt taatggataa accgccagag tcaaaggtca
     6661 ttcctttgcc gactaagata atcggcttcg catcagcatt cgggttgcct ttatattcaa
     6721 tcactgaaag aaaggcctca ttttcagagg ctctggaaac cgctaagtaa gcattcattc
     6781 ccaattctgc catctgtttt tcatcaacaa tggtagttga aatggcagga tagtcgtagg
     6841 ctaaaccctt agccaattcg gctaaatagt gaggattaca cacattaggc ggacaatttg
     6901 ctacattttt agcgtggctg attccaagtg ctacggcttt tccgtgttct aaagctcgtt
     6961 cggcatcagg aagatcttta cggtgtgcga cattaaaaat cacacggcgt aattcacggc
     7021 gaacttcagg tttgatgctt ttgaaatcgt tataggcata tagttgttct tggattgcct
     7081 ctaccgcaaa tcgcacattc caataaggtg ttctaccttt aacgtgcagt tcggttaaaa
     7141 agctgacagc ttccattgaa ccggtttcat taatagtttg tacacttttt tgaataattt
     7201 gtttgtattg gcgttcagtt aattcacgct cttttccaca gccgactaat aatactcgat
     7261 cagcgagtac attcggcaca ttatgcaaga gtaaggtttg ccctgctttg ccttctaaat
     7321 ctcctcttct cagtaatgtg ctgatatagc cgttacttaa tttatcaagc tgttctgcgg
     7381 cagaacataa tcggcggggt tcatagacac caacaaccaa acaggcggtt ctttgtttct
     7441 caacactgcc atttttgaca ctaaattcca tttttcctcc ttaattttta ttgctacaga
     7501 ttttataatg ccaacata
//
LOCUS       DANLVT010000118         7343 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.118, whole genome shotgun sequence.
ACCESSION   DANLVT010000118 DANLVT010000000
VERSION     DANLVT010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7343)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7343)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7343
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.118"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            38..307
                     /locus_tag="PXC99_002101"
     CDS             38..307
                     /locus_tag="PXC99_002101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005540356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDL5418520.1"
                     /translation="MKIMAVCGSGLGSSFMMEMNIKKVLAKLGVEAEVSHTDLSSVVA
                     DDADLFVMAKDIAASSNVPKEKLIVVKNIVGLAEFEEKLTAYFNQ"
     gene            320..1670
                     /locus_tag="PXC99_002102"
                     /pseudo
     CDS             320..1670
                     /locus_tag="PXC99_002102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013745980.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
     gene            complement(1765..2913)
                     /gene="dprA"
                     /locus_tag="PXC99_002103"
     CDS             complement(1765..2913)
                     /gene="dprA"
                     /locus_tag="PXC99_002103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HDL5418521.1"
                     /translation="MAYHYDLLRLLQVPQMGAQRIGRLLAELNFAEFCHYDKLQLKQI
                     GWNEKQIQRWFNPDQKWIDQAMTWSELPNQQIVTLFDENYPFLLKQISTAPPLIYVKG
                     NVESLSLPQIAIVGSRDYSHYGEYWAGQFAAELARHNIIITSGLAIGIDGFAHQKIVM
                     EQGITIAVLGSGLNQVYPARHKKLAEQIVDLGGALVSEFSPNQPPVAENFPRRNRIIS
                     GLSLGTLVIEATLNSGSLITARYALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVE
                     GVEDILEVVASQYQPQQIPLFDESKPTVSTSLQAVKNSEKFAKNLPSLTACQQQIYQH
                     ISLEPMAIDDLAKVTELTIEILLVELLGLELAGVIKQVSGGYVMDNGY"
     gene            3002..3514
                     /gene="def"
                     /locus_tag="PXC99_002104"
     CDS             3002..3514
                     /gene="def"
                     /locus_tag="PXC99_002104"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HDL5418522.1"
                     /translation="MAILDVVLYPDEKLATVCEPVEQVDEALNRFIDDMFETMYEHEG
                     IGLAAPQVGVLKRVITIDIEGDKTNQVVLINPEILESSGETGIEEGCLSIPGHRALVP
                     RKEKVKVKALNRQGEEIIIDADDLFAICIQHEIDHLNGVLFVDHISNLKRQRIKEKMQ
                     KLKKQIARAK"
     gene            3608..4534
                     /gene="rfaD"
                     /locus_tag="PXC99_002105"
     CDS             3608..4534
                     /gene="rfaD"
                     /locus_tag="PXC99_002105"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HDL5418523.1"
                     /translation="MIIVTGGAGMIGSNIVKALNEIGRKDILVVDNLKNGEKFINLVD
                     LDIADYCDKEDFIASIIAGDDFGEIDAVFHQGACSATTEWDGKYLMQNNYEYSKELLH
                     FCLDRQIPFFYASSAATYGGRSDNFIEKREFEGPLNAYGYSKFLFDEYVRRILPEAES
                     PVCGFKYFNVYGPREQHKGSMASVAFHLNNQMLKGENPKLFAGSEQFLRDFVYVEDVA
                     KVNLWAWQNSISGIFNLGTGKAESFQEVANAVIKYHGKGEIETIPFPDHLKSRYQTFT
                     QADLTNLRAAGYTGTFKTVAEGTAEYMAWLNR"
     gene            complement(4602..5132)
                     /gene="fabA"
                     /locus_tag="PXC99_002106"
     CDS             complement(4602..5132)
                     /gene="fabA"
                     /locus_tag="PXC99_002106"
                     /EC_number="4.2.1.59"
                     /EC_number="5.3.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017807287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-hydroxydecanoyl-ACP
                     dehydratase/trans-2-decenoyl-ACP isomerase"
                     /protein_id="HDL5418524.1"
                     /translation="MNSCTPIIKPSYTYEELLLSGKGELFGEKGPQLPAPPMLMMDRI
                     IEMNQEKGNFEKGYIEAEFDIKPDLWFFNCHFINDPVMPGCLGLDAMWQLVGFYLGWI
                     GGEGKGRALGVGEVKFTGQILPTAKKVTYRIHMKRVVNRKLVMGVADGEVEVDGRVIY
                     TATDLKVGLFQDTTAF"
     gene            complement(5245..6882)
                     /locus_tag="PXC99_002107"
     CDS             complement(5245..6882)
                     /locus_tag="PXC99_002107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5418525.1"
                     /translation="MTLSLLSSQKLVMQNDFSRLDEKLNFLDFQPQAKQALNQFLQSQ
                     FGALLVLKSELFPEFINEITEYLKKYSVDLPIISKMDFNKNSLFGYSVFLERELKTEY
                     VKGAIHEADKGILIVNIRSLLLDITQWDKLKQALLFGEYEPNSVNHSPYLSAKEKSTF
                     KLILVGEREDISTLSAYDDGLYQFGQYTEIKSYLSLSDNVEQWGGYVQNYAENLINKR
                     LTSTALNQFLQAYIRESESRELVSISPTLLRKHLLGIQNFYPNVTEIDEVKGYFDYLE
                     QQSSILNQYTVGDILTNQLYIETEGEEIGQINGLSVIEFEGIPHSFGEPLRMSCNVQY
                     GDGEITDIERKVELGGNIHSKGIIIAQSCLANLLELPTQLPFSASIAFEQSYGEIDGD
                     SSSLAIFNVLVSALAKVGLPQSIAVTGAIDQFGNVLSVGGVNQKIEGFFNICHARQLT
                     GKQGVIIPAACVSHLSLSSEVVEAVEQGLFKIWTVENVFDAIAILFERDFYDDEKAPN
                     SAQTALFTLIHQNLDERESEETSGSFLSKICKKIKLD"
     gene            6975..>7343
                     /locus_tag="PXC99_002108"
     CDS             6975..>7343
                     /locus_tag="PXC99_002108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ter macrodomain-binding protein MatP"
                     /protein_id="HDL5418526.1"
                     /translation="MRYQKLITQETTWKWQYLLKKHREGENITKYEEQSLIDLKVQFL
                     STLQNSPDEVEKWIKSEMTPEQRKKMRQSVRAKRKRFFNAEKQTTKKKSIDLEYSSWL
                     RLSKYAKSQKLTLSEAIVKLT"
BASE COUNT         2208 a         1548 c         1397 g         2190 t
ORIGIN      
        1 cagacaacta ttcattcacc tttaatggag atttactatg aaaattatgg cagtatgtgg
       61 ttccggctta ggtagcagct ttatgatgga aatgaacatt aaaaaagtat tggcaaaact
      121 cggtgtcgaa gcggaagtga gtcataccga cctttcctct gttgttgctg atgatgctga
      181 tttatttgtg atggcaaaag atattgccgc aagcagcaat gtgccgaaag aaaaactcat
      241 cgtggtaaaa aacattgttg gattagcaga attcgaagaa aaattgaccg cttactttaa
      301 ccaataacgg agatgttata tggaatcgct actctttttt atattagata ttctcaaagt
      361 gccttccgtt ctagtgggtt taattgctct ggtcggttta gttgcacaga aaaaatcggt
      421 atccgatatt gttaaaggaa caatcaaaac tattttaggc ttcttagtgt taagcggtgg
      481 tgcaacagta cttttaagct ccctgactcc tttaggcggt atgtttgaac acgccttcaa
      541 cgtgcaaggc attatcccta ataacgaagc gattgtgtct atggcaatcg aaaaatatgg
      601 tacggcgact gcgttaatta tggcattcgg tatggtagcc aatattttaa ttgcacgttt
      661 tacccgccta aaattcattt tcttaaccgg acaccatacc ttctatatgg cgtgtatgat
      721 cggcgtaatc ctaaccgttg ccggctttga aggtattcag ctcgtctttg tcggggcatt
      781 aaccttaggg ttaattatgt ttcccgacta tcgctcactt ctatatgaaa aaagtgaccg
      841 ctagcaatga tgttgcctta ggtcatttcg gcacattggg ctacgtgctt gctggttcaa
      901 tcgggcaact ggtaggaaaa ggctctaaat ctaccgaaga aatggattta cctaaaaacc
      961 tcggcttctt acgtgatagc tccatttcta tttcactcac gatgatggcg atttactata
     1021 ttctcgccct tgcttcgggc agtgaatacg tttctacatt aagcggcgga caacattatt
     1081 tagtgtatgc caccattcaa gccatcactt ttgcagccgg tgtttatgtc attttgcaag
     1141 gggttcgttt aattttagcc gagatcgtcc cggcatttac cggcttctcc gaaaaattag
     1201 tacctgatgc caaaccggct ctcgactgcc cgattgtttt cccttacgcc cccaatgcgg
     1261 tattagttgg atttcttgcc agtttcttag gtgggatttt aagcttagcc attctagggc
     1321 aacttaattg ggtgttaatt ttaccgggcg tagtgccaca cttcttctgt ggggcaactg
     1381 ccggcgtatt tgggaacgcc accggcgggc gtcgtggtgc aattatcggt gcttttattc
     1441 acggcatatt aattaccttc ttgcctgtat tcttattacc tgtactgggt tcattaggct
     1501 ttgctaacac cactttctct gactcagact tcggcggtat tgggattgtg ttaggctata
     1561 tggctcaata cttcgacaag aatatcatta cgctcattat tgtcggctta ttcgctctgt
     1621 tggtagccta taattatttg gcgaaaaaac cggcaaaact gaatacctaa ttaaaatcag
     1681 gtgttatttg ctgcctgcga ggaatcttcc ctgccatttc ttgatggtag ggaattttgt
     1741 ttagttaaac gacaacgctc ttgttcaata cccattatcc atcacatacc ccccactcac
     1801 ttgtttaatc acaccggcta attccagacc cagtaattca accagcaata tttcaatcgt
     1861 caactccgta actttggcta aatcatcaat tgccatcggc tctaagctga tatgctgata
     1921 aatttgctgc tggcaagcgg tcagacttgg cagatttttt gcgaattttt cgctgttttt
     1981 gaccgcttgt aaagatgtgc ttactgttgg cttagactca tcaaacaaag ggatttgctg
     2041 aggttgatat tgcgaggcga ccacctctaa aatatcttcc acaccttcca cgagcaatgc
     2101 cccttcttta attagcttgt ggcaaccttg tgcgtaaggg ttttgtaccg cattcggtaa
     2161 cgcaaacact tccctacctt gttcaagggc ataacgagcg gtaatcagtg aaccactatt
     2221 aagcgttgct tcaataacta aagtgccgag cgataagcca ctaataattc gattacgacg
     2281 aggaaaattt tctgccaccg gcggctgatt aggcgagaac tccgacacca atgcaccacc
     2341 taaatcaaca atttgttcgg ctaatttttt atggcgagca ggatagactt gatttaatcc
     2401 actccctaac acggcaatcg ttatgccttg ttccataacg attttttgat gggcaaaacc
     2461 gtcaatacca atggctaaac cgctggtaat gataatatta tggcgagcta attcggcagc
     2521 aaattgccca gcccaatatt caccataatg agaatagtct cggctgccaa caatcgcaat
     2581 ttgtggcaga gaaaggcttt ccacatttcc ctttacataa attaacggtg gcgcagtcga
     2641 aatttgtttt aagagaaacg gataattttc atcaaagagt gtcacaattt gctgatttgg
     2701 caattctgac caagtcatcg cctgatcaat ccacttttga tcaggattaa accaacgttg
     2761 aatttgcttt tcattccaac ctatttgttt gagttgaagt ttgtcatagt ggcaaaattc
     2821 agcaaaattg agttccgcca ataatcgccc tatacgttga gcccccattt gcggcacttg
     2881 taataatcgt aataaatcgt agtgatatgc catattttca tcctcaaaat ttccctaata
     2941 ataagaaaag gtttaaaata gccaaacgaa ttttttaaac ttttcgagag agatcacaaa
     3001 aatggcaata ttagatgttg tgctttaccc cgatgagaaa ctggcaaccg tttgtgaacc
     3061 ggtggaacag gtggacgaag cactgaatcg ttttatcgat gatatgtttg agacaatgta
     3121 cgaacacgaa ggtattggct tagctgcacc gcaagtgggc gtacttaagc gtgttattac
     3181 tattgatatt gagggcgaca aaaccaatca agtggtgtta attaaccctg aaattttaga
     3241 aagcagcggt gaaaccggca ttgaagaggg ctgtctctcc attcccgggc atcgtgcctt
     3301 agtgccacgc aaagagaaag tgaaagtcaa agcccttaac cgccaaggcg aagaaattat
     3361 catcgatgcc gatgatttat ttgcgatttg tattcaacac gaaatcgacc atttaaacgg
     3421 cgtgcttttt gttgaccaca tatccaattt aaaacgccaa cgcatcaaag aaaaaatgca
     3481 aaaattgaaa aagcaaattg cacgagcgaa ataaccaggc acaagcggtt aaaatggctt
     3541 aaaaatttgc aaattaagtg tgatgacacg ataataacca cagttcaact ttagaaagga
     3601 taaaaatatg attatcgtca ccggcggcgc aggtatgatt ggcagtaaca ttgttaaagc
     3661 cttaaatgaa atcggtcgca aagatatttt agtagtagat aacctcaaaa acggggaaaa
     3721 atttatcaac ttagtggact tagatattgc ggattattgc gataaagagg atttcatcgc
     3781 ctctattatc gccggcgatg attttggtga gattgatgcg gttttccatc aaggggcttg
     3841 ctcggcaacc accgaatggg acggcaaata cttaatgcaa aataactacg aatattcaaa
     3901 agagttattg catttttgct tagatcgcca aattcctttc ttctatgcct caagtgcggc
     3961 aacctatggc ggacgttcgg ataattttat cgagaaacgg gagtttgaag gtccattaaa
     4021 tgcttatggc tactccaaat tcctgtttga tgaatatgtc cgccgtattt tgcctgaggc
     4081 agaatcaccg gtctgtggtt tcaaatattt caacgtatac gggcctcgtg agcaacacaa
     4141 aggttcaatg gcaagcgtgg cattccactt aaacaaccag atgttaaaag gggaaaatcc
     4201 aaaactattt gccggctcag agcagttctt gcgtgatttt gtttatgtgg aagatgtggc
     4261 aaaagtgaat ctttgggcgt ggcaaaacag catttctggc attttcaacc tcggcaccgg
     4321 aaaagcggaa tctttccaag aagttgcgaa tgcggttatc aaataccacg gcaaaggcga
     4381 aattgaaacc atcccattcc cggatcattt aaaatcccgc taccaaacgt tcactcaagc
     4441 ggacttaacc aacctaagag ccgctggcta cacaggcaca tttaaaaccg ttgctgaagg
     4501 aacagcggaa tatatggcgt ggttgaatcg ctaatcaaac gttgttaaaa aagcagaaag
     4561 agctacgaaa tgtagctctt tttgttataa ggttataagg attagaatgc tgtcgtatct
     4621 tggaataagc ctacttttaa atcagtagca gtatagatca ctcgcccgtc cacttcgact
     4681 tcaccatcag caacccccat cactaactta cgattgacca cacgtttcat atggatacgg
     4741 taagtaactt ttttcgctgt cggtaaaatt tgtccggtga attttacttc acctacgccc
     4801 aatgcacgcc ctttgccttc gccaccaatc cagccgagat aaaaaccaac cagttgccac
     4861 atcgcatcta agcctaagca acccggcatt acaggatcgt taataaaatg gcagttaaaa
     4921 aaccataaat ccggtttaat atcaaactca gcttcaatat accctttttc aaaattgcct
     4981 ttttcttggt tcatttcaat gatgcgatcc atcattaaca tcggtggagc cggcaattga
     5041 ggcccttttt caccgaataa ttctcctttt cctgatagca aaagctcttc gtaagtatag
     5101 cttggtttga taattggtgt acaactgttc attattttta aaatcctgta aagtgaaaaa
     5161 agcctgttat atcaataact gataaatcag gctgatagta acagactttt aattcagtga
     5221 acagttgtaa gctgacttgt cggatcagtc tagctttatc tttttgcaaa ttttgcttaa
     5281 aaatgaaccg cttgtttctt cactttcccg ctcatctaga ttctggtgaa tcaaggtaaa
     5341 taatgctgtt tgggctgagt taggggcttt ctcatcatca taaaaatccc gctcaaacag
     5401 aatcgctatg gcatcaaaca cattttccac cgtccaaatt ttaaatagac cttgctccac
     5461 tgcctcaaca acttctgaac ttaaactcaa atggctaaca caggccgccg gaataatcac
     5521 accttgtttc cccgttaatt ggcgagcgtg acaaatatta aagaagcctt caattttctg
     5581 atttaccccg cccacgctta gcacattccc aaattgatcg atagcacctg tcaccgcaat
     5641 agattgtggc aagccaactt tagctaaggc actcactagt acattgaaaa tcgcaagaga
     5701 agaactatcc ccatcaattt caccatagga ttgttcaaaa gcaatcgaag ctgaaaacgg
     5761 taactgggtt ggtagttcta acagattcgc taaacaagat tgagcgataa taataccttt
     5821 ggagtggata tttcccccta gctccacttt acgctcaata tctgtaattt cgccatcacc
     5881 atattgtaca ttacaactca tgcgtaaggg ctcgccaaaa ctatgcggaa tgccttcaaa
     5941 ctcaatgacc gataagccat tgatctgccc aatttcctct ccttcggttt caatataaag
     6001 ttgattagtc agaatatcac ccaccgtata ttgatttaat atcgatgatt gctgttctaa
     6061 ataatcaaaa taacctttta cctcgtcaat ttcggtcaca tttgggtaaa aattttgaat
     6121 tcctaataaa tgttttctca ataatgtagg ggaaatagac accaactctc ggctttcact
     6181 ttcacgtata taggcctgta aaaattgatt aagcgctgtg gaagttaatc gcttattgat
     6241 gagattctca gcataattct gaacataacc tccccactgc tccacattat ccgataatga
     6301 taagtaggat tttatttcgg tatattgccc aaattggtac aacccatcat cataagcaga
     6361 taaagtagaa atatcttctc tttcccctac taaaatcaat ttaaatgttg atttctcttt
     6421 agccgataaa tagggtgagt gattaacaga atttggctca tattcaccaa ataataatgc
     6481 ctgttttagc ttatcccatt gggtaatatc caataagagc gaacggatat taacaattaa
     6541 aattccctta tctgcctcgt gaattgcacc tttaacatat tctgttttca gctctctttc
     6601 caaaaacaca gaataaccaa atagactatt tttattgaaa tccattttgc taataatcgg
     6661 cagatctaca ctatattttt tcagatattc cgtgatttca ttgataaatt ccggaaaaag
     6721 ctcagatttt aagactaata aagcaccaaa ctgagattgt aaaaattgat ttaacgcttg
     6781 ttttgcttga ggttgaaaat ctaaaaaatt caatttctca tctaaacgag agaaatcatt
     6841 ttgcattact aatttttggc tactaagtaa agaaagggtc acaaatctgc ctcattattg
     6901 aaaatttggt ttattataca aaattccgct atacttgcta aatatagctt actttttcct
     6961 atcatattca gattatgcga tatcagaaac tcatcaccca agaaacaact tggaaatggc
     7021 aatatctcct aaaaaaacat cgtgaaggag aaaatattac taagtacgaa gaacaaagct
     7081 tgatcgattt aaaagttcag ttcctctcta ctttgcaaaa ctctccggac gaagtggaaa
     7141 aatggattaa gtcggaaatg acgcctgagc aacgtaagaa aatgcgtcaa tcagtacgcg
     7201 ccaaacgcaa acgcttcttt aatgctgaaa agcaaacaac caagaaaaaa tccattgatt
     7261 tagagtattc gagctggtta aggctctcta aatatgccaa aagccaaaaa ctaacgcttt
     7321 ctgaagctat tgtcaaatta acc
//
LOCUS       DANLVT010000119         7235 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.119, whole genome shotgun sequence.
ACCESSION   DANLVT010000119 DANLVT010000000
VERSION     DANLVT010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7235)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7235)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7235
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.119"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            55..474
                     /locus_tag="PXC99_002109"
     CDS             55..474
                     /locus_tag="PXC99_002109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005704641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS sensor domain-containing protein"
                     /protein_id="HDL5418527.1"
                     /translation="MVPSNEAVLKAVHDTLVISTTDLQGVITYANDLFCKLTGFTREE
                     LIGQPHNIVRHPAVPKEVYKDMWDTIQAGKIWTGIVPNCGKGGVVYVVDTTVQPMFDE
                     TGKITGYISVRRVINDLMTNFEAVESAKEIFDDFYGE"
     gene            545..2101
                     /locus_tag="PXC99_002110"
     CDS             545..2101
                     /locus_tag="PXC99_002110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite reductase flavoprotein subunit alpha"
                     /protein_id="HDL5418528.1"
                     /translation="MSLIPHIHIAYGSESGNAEKLAQQLAIQPFLLPYSPTLSTLNET
                     DLSQLSAESLLLIVTSSFGDGEPPENADEFAEKLENLTACNLQYAIFGLGDITYDKFC
                     GYSKQLDSLLQQKQAKAVIARVDADLNYQEIFKQWLPLVEQALHSTNKETIQHSLSVQ
                     AYGEEMAYQAEVLEIKHLANSSPAVYHIRLSLKESGIFYQAGDLIYVKVQQPDRLLNE
                     YAEWFNDQNAVALLRHKELRLLSKNVLRDIQKICGSNELKDLTKISNKKALEQYVYGR
                     DLLDVLRDFDPNKSVTLADLEPILSNLAARAYSISSCGKTHPDYVDLCIRHVSYHLNG
                     RDYQGTASGYLSELQAGDFVSIFANANPNFRLPETLTAPVVMIGSGTGIAPHIAFLQA
                     LEQQYQGVESYLFFGERYRDKDFLYQTELENYLAKGTLTQLFTAFSRDQAEKFYVQDA
                     LSQQAELVWHLIQQGAYFYICGSKAMSKAIDAELIKIADQIGGDPYIDDFNNIIAKLV
                     AEGRLMRDVY"
     gene            complement(2159..2416)
                     /gene="rpsQ"
                     /locus_tag="PXC99_002111"
     CDS             complement(2159..2416)
                     /gene="rpsQ"
                     /locus_tag="PXC99_002111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005759643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HDL5418529.1"
                     /translation="MTDKIRTVQGKVVSDKMDKSFVVAIERTVKHPLYGKFIRRTTKL
                     HVHDENNEAKLGDVVEIKECRPISKTKSWTLVRVVEKAVVA"
     gene            complement(2416..2607)
                     /gene="rpmC"
                     /locus_tag="PXC99_002112"
     CDS             complement(2416..2607)
                     /gene="rpmC"
                     /locus_tag="PXC99_002112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HDL5418530.1"
                     /translation="MKAQELRNKSVEELNGELVNLLGEQFKLRMQAATGQLQQTHQLK
                     QVRRSIAQVKTVLTEKAGE"
     gene            complement(2607..3017)
                     /gene="rplP"
                     /locus_tag="PXC99_002113"
     CDS             complement(2607..3017)
                     /gene="rplP"
                     /locus_tag="PXC99_002113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HDL5418531.1"
                     /translation="MLQPKRTKFRKVHKGRNRGIAGGTEVSFGSFGLKAIGRGRLTAR
                     QIEAARRAMSRAVKRQGKIWIRVFPDKPITEKPLEVRMGKGKGNVEYWVALIQPGKVL
                     YEMDGVSEEVARNAFALAAAKLPFKTTFVTKTVM"
     gene            complement(3031..3738)
                     /gene="rpsC"
                     /locus_tag="PXC99_002114"
     CDS             complement(3031..3738)
                     /gene="rpsC"
                     /locus_tag="PXC99_002114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HDL5418532.1"
                     /translation="MGQKVHPNGIRLGIVKPWNSTWFANTQDFADNLDGDFKVRKFLN
                     KELANASVSRITIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAKIAGVPAQIN
                     IAEVKKPELDAKLVADSIASQLERRVMFRRAMKKAVQNAMKLGAKGIKVEVSGRLGGA
                     EIARSEWYREGRVPLHTLRADIDYSTAEAHTTYGVIGVKVWIFKGEILGGMAAVIESE
                     KEPAAQPKKAPRGKGRK"
     gene            complement(3758..4090)
                     /gene="rplV"
                     /locus_tag="PXC99_002115"
     CDS             complement(3758..4090)
                     /gene="rplV"
                     /locus_tag="PXC99_002115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000447526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HDL5418533.1"
                     /translation="METIAKHRYARTSAQKARLVADLIRGKKVSVALEILTFTNKKAA
                     TLVKKVLESAIANAEHNDGADVDDLKVAKIFVDEGPSMKRVMPRAKGRADRILKRTSH
                     ITVVVSDR"
     gene            complement(4101..4376)
                     /gene="rpsS"
                     /locus_tag="PXC99_002116"
     CDS             complement(4101..4376)
                     /gene="rpsS"
                     /locus_tag="PXC99_002116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HDL5418534.1"
                     /translation="MPRSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSM
                     IGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHAADKKAKK"
     gene            complement(4407..5228)
                     /gene="rplB"
                     /locus_tag="PXC99_002117"
     CDS             complement(4407..5228)
                     /gene="rplB"
                     /locus_tag="PXC99_002117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HDL5418535.1"
                     /translation="MAIVKCKPTSAGRRHVVKVVNAELHKGKPFAALLDTKSKTGGRN
                     NLGRITTRHIGGGHKQHYRLIDFKRNKLDIPGVVERLEYDPNRSANIALVLYKDGERR
                     YILAPKGLTAGDQIQAGASAPIKVGNALPMRNIPVGTTVHNVELKPGKGGQIARSAGA
                     YVQIIAREGNYVTLRLRSGEMRKVLAECTATIGEVGNSEHMLRVLGKAGANRWRGIRP
                     TVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRHNKRTDKFIVRRRGK"
     gene            complement(5247..5552)
                     /gene="rplW"
                     /locus_tag="PXC99_002118"
     CDS             complement(5247..5552)
                     /gene="rplW"
                     /locus_tag="PXC99_002118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HDL5418536.1"
                     /translation="MIQQERLLNVLKAPHISEKATNNAEKGNTIVFKVALDANKVEIA
                     NAVEELFEVKVDSVRTVVVKGKTKRRGAKVGRRSDWKKAYVTLQEGQSLDFVEGAAE"
     gene            complement(5549..6151)
                     /gene="rplD"
                     /locus_tag="PXC99_002119"
     CDS             complement(5549..6151)
                     /gene="rplD"
                     /locus_tag="PXC99_002119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010304939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HDL5418537.1"
                     /translation="MELQVVGANALTVSETTFGREFNEALIHQVVVAYAAGARQGSRA
                     QKTRAEVSGSGKKPWRQKGTGRARSGDIKSPIWRSGSVTFAAKPQDHSQKVNKRMYRG
                     AIKSILSELVRQDRLVVVEKFEIDAPKTKVLAQKLKDMALNDALIITANVDENLFLAA
                     RNLYKVDVRDVQGIDPVSLIAFDKVVVTVDAVKQIEEMLA"
     gene            complement(6167..6796)
                     /gene="rplC"
                     /locus_tag="PXC99_002120"
     CDS             complement(6167..6796)
                     /gene="rplC"
                     /locus_tag="PXC99_002120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000579825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HDL5418538.1"
                     /translation="MIGLIGRKVGMTRVFTEDGVSIPVTVIEIEANRVTQVKTLENDG
                     YSAIQVTTGSKKASRVTKPEAGHFVKAGVEAGRGLWEFRTTEGEEFTLGQEINVDIFT
                     DVKKVDVTGTSKGKGFQGGVKRWNFRTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKK
                     MAGHLGAERVTVQSLEVVRVDVERKLLLVKGAVPGATNGDVIVKPAVKA"
     gene            complement(6822..7133)
                     /gene="rpsJ"
                     /locus_tag="PXC99_002121"
     CDS             complement(6822..7133)
                     /gene="rpsJ"
                     /locus_tag="PXC99_002121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014268624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HDL5418539.1"
                     /translation="MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPT
                     RKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISL
                     G"
BASE COUNT         2105 a         1544 c         1347 g         2239 t
ORIGIN      
        1 taaacacata acaaaattca tttatattaa tggagattca acacggctga acaaattgtt
       61 ccttcaaatg aagctgtttt aaaagcagtc cacgatactt tagttatttc aacaactgat
      121 ttacaaggtg ttattactta cgctaacgac cttttctgca aattaaccgg ttttacccgt
      181 gaagaattaa ttggacaacc gcataatatc gtacgccacc cagctgtacc aaaagaagtt
      241 tataaagata tgtgggatac aatccaagcc ggtaaaatct ggacaggtat cgtaccaaac
      301 tgcggtaaag gcggtgtagt ttatgtggtt gataccaccg ttcaaccaat gtttgatgaa
      361 acaggcaaaa ttacaggcta tatcagcgtt cgccgtgtaa ttaatgattt aatgaccaac
      421 tttgaagcag tagaatcagc aaaagaaatc tttgatgact tctacggtga ataattaaaa
      481 aacaatgatt gcgtgtaaaa gatgatctct tttacacgca attttttatt ttcgaggagt
      541 ttgtatgtct ctcattcccc atatccacat tgcttatggt tcggagtctg gtaacgcaga
      601 aaagcttgcc caacaattag ctatccaacc ctttttactt ccctactcac ccacactttc
      661 tacattaaac gaaaccgatt taagccaatt atctgccgag agtttattgc ttattgtaac
      721 cagctccttt ggtgatggcg aaccacctga aaacgccgat gaatttgcag aaaaattgga
      781 aaatttgacc gcttgtaatc tgcaatatgc gatattcggg ctaggtgata ttacttatga
      841 taaattctgt ggctatagca aacaactaga ttcattatta caacaaaaac aagctaaagc
      901 tgtgattgca agggttgatg ccgatttaaa ctatcaagaa atttttaaac aatggctacc
      961 cctagtggag caggcattac attcaacaaa caaagaaacg atccaacatt ccctttctgt
     1021 tcaagcttac ggcgaggaaa tggcatacca agcagaagtg ttggaaatta agcatttggc
     1081 aaactcaagc cctgcggtgt atcacattcg tttatcatta aaagagagcg gtattttcta
     1141 tcaagcaggg gatttaattt atgtcaaagt gcagcaacca gacagactat taaatgaata
     1201 tgcagaatgg tttaacgatc aaaatgcagt tgcattacta cgccataaag aactccgact
     1261 actaagtaaa aatgtactgc gtgatattca aaaaatttgc ggcagtaatg aactcaaaga
     1321 tttaactaaa atttccaata aaaaagcatt ggaacaatat gtctatgggc gggatttatt
     1381 agacgtatta cgcgattttg acccaaacaa aagcgtgaca ttagccgatt tagagccaat
     1441 tttatctaac ttagccgcac gagcctattc aattagctct tgcggtaaaa ctcaccctga
     1501 ttatgttgat ttatgtatcc gccacgtttc gtatcattta aacggtagag attatcaagg
     1561 gactgcaagt gggtatttat ccgaattaca agcgggcgat tttgtctcga tttttgcaaa
     1621 tgccaatccg aatttccgtt tacccgaaac attaaccgct ccggtggtga tgattggctc
     1681 aggtactggc attgctccgc atatcgcatt tttacaagcg ttagagcagc aatatcaggg
     1741 ggttgaaagc tatttattct tcggcgagcg ttatcgtgat aaagattttc tgtatcaaac
     1801 ggaactggaa aattacttag caaaaggcac cttaactcag ctgtttactg ctttttcacg
     1861 tgatcaggca gagaagtttt atgtgcaaga tgccctatcg caacaagcag agttagtttg
     1921 gcatttaatt cagcaagggg cttatttcta tatttgtggt agcaaagcaa tgagtaaagc
     1981 aatagatgcg gaactcatca aaattgcaga tcaaattgga ggcgatcctt atattgatga
     2041 tttcaataat attattgcaa aattggtcgc agaaggccga ttaatgcgag atgtatatta
     2101 gcaaatgaaa aaaactaaaa acccagcaaa agctgggttt ttatttaatc atagttcatt
     2161 aagcaacaac tgctttctca actacacgaa ctaaagtcca agatttagtt tttgaaatag
     2221 gacgacattc cttaatttca acaacatcac ctaatttagc ttcattgttt tcatcgtgta
     2281 catgaagttt agtagtacga cggataaact taccgtataa cggatgttta actgtacgtt
     2341 cgatagcaac aacaaatgat ttatccattt tgtcgctaac cactttacct tgtactgtac
     2401 gaattttatc agtcattatt cacccgcctt ttcggttaat acagttttaa cttgtgcaat
     2461 actacgacgc acttgtttta actggtgggt ttgttgaagc tgaccggtgg ctgcttgcat
     2521 acgcaatttg aattgttcac ctaaaaggtt cactaactca ccattcagct cttcaacact
     2581 tttattacgt agttcttgag ctttcattac atcaccgtct tagttacaaa tgtggttttg
     2641 aacggaagtt tagctgccgc taatgcaaac gcattgcgtg caacttcttc agaaacacca
     2701 tccatttcat agagaacttt acccggttgg attaaggcta cccagtactc aacgttacct
     2761 ttacctttac ccatacggac ttctaatggt ttttcagtaa ttggtttgtc tgggaacaca
     2821 cggatccaga ttttaccttg acgtttaacc gcacggctca tcgcacgacg agcagcttca
     2881 atttgacgag ctgttaaacg accacggcca atagctttta aaccaaatga accgaagctc
     2941 acttctgtgc cacccgcgat accacggtta cggcctttgt gtactttacg gaattttgtg
     3001 cgttttggtt gtaacattca gtgattctcc ttatttacga cctttgccac gtggcgcctt
     3061 tttaggctgt gccgctggtt ctttttcaga ttcaatcact gcagccattc caccaagaat
     3121 ttcacctttg aagatccaca cttttacgcc gattacgccg taagtagtgt gagcttcagc
     3181 agtactataa tcgatgtctg cacgaagcgt atgtagaggt acacgacctt cacgatacca
     3241 ttctgagcga gcaatttctg caccacctaa acgaccgcta acttcaactt tgataccttt
     3301 agcacctaat ttcatcgcgt tttgaactgc ttttttcatt gcacgacgga acatcacacg
     3361 acgttcaagt tgagaagcga tgctatctgc gactaatttc gcatctagct ctggtttttt
     3421 cacttcagcg atgttgattt gagctggaac gccagcgatt ttcgcaactg cgttgcgtaa
     3481 tttttcaaca tcttcacctt ttttaccgat aacgataccc gggcgagctg tgtgaatagt
     3541 tacacgaatg ctttttgcag gacgctcaat agtgatgcgt gatacagaag cgttcgctaa
     3601 ctctttgttt aaaaatttac gtactttgaa gtcgccgtct aagttatcag cgaaatcttg
     3661 tgtattcgcg aaccaagtag agttccaagg tttaacaata cctaggcgaa taccattagg
     3721 atgtactttc tgacccattt gttattctcc tacttaatta acgatctgac acaaccacag
     3781 tgatgtggct tgtacgtttt aaaatacgat ctgcacgacc ttttgcacgt ggcattacac
     3841 gtttcatgct tggaccttca tcaacgaaga ttttagcaac tttaagatca tcgacatctg
     3901 caccgtcatt atgctctgcg tttgcaatag ctgactctaa tactttctta acaagcgtcg
     3961 ctgctttttt gttagtgaaa gttaagattt ctaatgctac agaaactttt ttaccgcgaa
     4021 ttaaatcagc aactaagcga gctttttggg cagaagtacg agcgtaacga tgtttagcaa
     4081 tagtttccat cttttacctc ttatttctta gctttcttat ctgcggcgtg accgcggtat
     4141 gtacgagtcg gtgcaaattc acctaattta tgaccgatca tttcgtcgga aacataaaca
     4201 ggaacgtgct gacgaccatt atggactgcg atggtcaaac caatcattga tggaatgatc
     4261 attgaacgac gggaccaagt tttaattggt tttttatccc cgctttccac cgccttctct
     4321 accttcttca acaagtgtag gtcaaggaaa ggacctttct tgagggaacg tggcattggt
     4381 gtttaccttt tagttaatga attaaattat ttgccacgac gacgtacgat gaatttatca
     4441 gtacgtttgt tgtgacgagt tttcttacct ttggtttgaa cgccccaagg tgtaacagga
     4501 tgtttaccga agttacgacc ttcaccacca ccgtgtgggt gatctaccgg gttcattgca
     4561 gtaccacgaa cagttggacg aatacctctc caacggtttg cacctgcttt accaagaacg
     4621 cgaagcatat gctctgagtt acctacttca ccaatggttg cagtacactc agctaatact
     4681 ttacgcattt cgcctgaacg aagacgtaaa gttacatagt taccttcacg ggcaatgatt
     4741 tgaacgtaag caccagcaga acgtgcaatt tgaccacctt taccaggttt taattcaacg
     4801 ttgtgtacag ttgtacctac tgggatgtta cgcattggta atgcgttacc tactttaatc
     4861 ggagctgaag cacccgcttg aatttgatca ccagcagtta aaccttttgg tgctaaaata
     4921 tagcgacgtt caccatcttt ataaagtact aatgcgatat tcgcagaacg atttggatcg
     4981 tattctaaac gctcaacaac acccggaatg tctaatttat tacgtttaaa atcaattaaa
     5041 cggtagtgtt gtttgtgacc gccaccaatg tgacgagttg tgatacgacc taagttgtta
     5101 cgaccaccag ttttagattt agtatctaaa agtgctgcaa aaggtttacc tttgtgaagc
     5161 tcagcgttta caactttaac aacgtgacga cgaccagcgg aggtcggctt acatttaacg
     5221 atagccattt attttatctc ctctgattac tctgccgcac cttcaacgaa gtcaagcgat
     5281 tgaccttctt gaagagttac ataagctttt ttccagtcac tacgacgacc aactttagca
     5341 ccacggcgtt tagttttacc tttaactact acggtacgaa cagaatcaac ttttacttca
     5401 aaaagttctt caactgcatt tgcaatctca actttgtttg catctaatgc aactttgaat
     5461 acgattgtat tgcctttttc tgcgttgttt gtcgcttttt cagagatatg tggtgcttta
     5521 agcacgttta gcaaacgttc ttgttgaatc atgctaacat ctcctcaatt tgttttactg
     5581 catctacggt tacaaccact ttatcgaaag caattaagct aactgggtca ataccttgca
     5641 catcacgcac atcaacttta tataagttgc gtgctgctaa gaataaattc tcatctacgt
     5701 ttgcagtaat gataagagcg tcatttaacg ccatatcttt taatttttgt gctaatactt
     5761 tagtttttgg tgcatcgatt tcgaatttct caacaaccac taaacggtct tgacgaacta
     5821 attcagaaag aatgcttttg attgcaccac ggtacattct tttgttcact ttttggctgt
     5881 gatcttgtgg tttcgcagca aaagttacac tacccgaacg ccaaattggt gatttaatat
     5941 caccagaacg tgcacggcct gtaccttttt gacgccaagg ttttttacct gaaccagaca
     6001 cttcagcacg agttttttga gcacgagatc cttgacgagc acctgctgca taagcaacaa
     6061 ctacttggtg gattaatgct tcattgaact cacgtccgaa ggtagtttca gaaacagtta
     6121 gtgcgtttgc acctacaact tgtaattcca tctctatctc ctagacttat gctttaactg
     6181 ccggttttac gataacatca ccattagttg caccaggaac ggcaccttta actaataata
     6241 atttacgctc aacatctaca cgaacaactt caagtgattg aacggttaca cgctctgcac
     6301 ctaagtgtcc tgccattttt ttacctttaa acacacgacc tggagtttgg ttttgaccaa
     6361 tagaaccaag tacacgatgt gataaagagt taccgtgagt tgcatcttga gtacggaagt
     6421 tccaacgttt aacaccacct tggaagcctt taccttttga tgtaccagta acatcgactt
     6481 ttttaacatc agtaaagatg tcaacattga tttcttgacc taaagtgaat tcttcacctt
     6541 cagtagtacg aaattcccat aaaccgcgtc cagcttcaac acctgctttc acgaaatgac
     6601 ctgcttctgg tttagttaca cggctagctt ttttagagcc agtagtaact tgaattgcag
     6661 agtagccatc gttttcaagg gttttaactt gagtaacacg gttggcttcg atttcgataa
     6721 cggtaactgg aatagacacg ccgtcttcag tgaaaacgcg ggtcatacca actttacgac
     6781 cgattaaacc aatcattgta ataacctctt aaaattccca attaacctag actaatctga
     6841 acgtcaacgc cagcagctag atctaaacgc attaatgcat caacagtttt ttctgttggt
     6901 tcaacaatat caactaaacg tttgtgagta cggatttcat attggtcacg tgcatcttta
     6961 ttcacgtgtg gagaaatcaa tacagtgaaa cgttctttac gagttggtaa aggaattgga
     7021 ccacgaactt gtgcaccagt acgtttagct gtttctacga tctccgcagt agattgatca
     7081 attaaacgat gatcaaatgc ttttaagcgg atacggattc tttggttctg cattagacca
     7141 gagctccaat taaaaaattt agctaataaa aaaaccaaac taccacttaa caaattagtt
     7201 aagggagctc agttaaacct atatagttcc aaaat
//
LOCUS       DANLVT010000120         7149 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.120, whole genome shotgun sequence.
ACCESSION   DANLVT010000120 DANLVT010000000
VERSION     DANLVT010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7149)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7149)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7149
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.120"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..483)
                     /locus_tag="PXC99_002122"
     CDS             complement(<1..483)
                     /locus_tag="PXC99_002122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418540.1"
                     /translation="MITSNLERSFHGLNIAQHNYKIFLDESGGNIGKLKHTPNDKKGS
                     NFNRTISSHIGVPPVFVLGGIAQISNANLIAPDWRKLLHLQNKELKFSKIGKNFFNKL
                     GSKELRKVLEWINENNLCIHFALYDWVYFYDVDIIDSALIESDVCSVWKYLSEKIGNS
                     N"
     gene            complement(510..1184)
                     /gene="cas4"
                     /locus_tag="PXC99_002123"
     CDS             complement(510..1184)
                     /gene="cas4"
                     /locus_tag="PXC99_002123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated protein Cas4"
                     /protein_id="HDL5418541.1"
                     /translation="MGDLQNSAEILPLVQPKFGDDKRSISLSALQHYAFCPRQCALIH
                     NEQVWAENYLTAQGQALHERVDSGEPEVRKGIRFERTVHVAAEKLGISGILDLVERDL
                     KTGELKPVEYKRGKPKLDPIDEIQLCAQALCLEEMTEQTINEGALWYMQTRHRLPIIF
                     STELRTKTLATIAEVRSLLDSGTTPPPEYSKRCKACSLIDLCQPKLLERDRSKGYVVG
                     VFGSLL"
     gene            complement(1184..2047)
                     /gene="cas7c"
                     /locus_tag="PXC99_002124"
     CDS             complement(1184..2047)
                     /gene="cas7c"
                     /locus_tag="PXC99_002124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas7/Csd2"
                     /protein_id="HDL5418542.1"
                     /translation="MSIQNRYEFVFFFDVTNGNPNGDPDAGNMPRLDPETSKGLVTDV
                     CLKRKIRNFIEMSYENEAGYEIYVKEKSVLNLQNKRAYEALGIESEAKKLPKEEAKAR
                     EITAWMCKNFFDIRTFGAVMTTEVNSGQVRGPVQLAFAQSIDPIIPLEVSITRMAVTN
                     EKDLEKERTMGRKYIVPYALYRVHGFISAKLAEKTGFSDEDVQKLWQALQLMFEHDRS
                     AARGEMAARKLIVFKHDSELGNQPAHKLFDSVKVERINGEKDTPAKDYDDYCISVQTE
                     GLTGVTVEELL"
     gene            complement(2057..3838)
                     /gene="cas8c"
                     /locus_tag="PXC99_002125"
     CDS             complement(2057..3838)
                     /gene="cas8c"
                     /locus_tag="PXC99_002125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas8c/Csd1"
                     /protein_id="HDL5418543.1"
                     /translation="MITALTRYYYRLAAQEDRLTGEAKVPSYGFSEEKIGWVLELDSK
                     GNLVNVISNLTEDKKPKPKLMSVPRPEKRTSGIKPNFLWDKTAYVLGIESNPDKATAK
                     DQPINFAEKTFEAFKQYHLDLLADSNDEGLMAIRNFLQQWQPTHFAESICPREILDAN
                     VVFKLVGTSGYIHQREAAQTLWTSLLINQSDNAEKGLCLISGKLSPIQRTHPPIKGVF
                     GGQSSGGSIISFNKESFTSFGKEQGSNAPVSEQAAFAYTTALNYLLRTEKHRLTIGDA
                     STVFWAEADNTTQAEAAEGFFAALMTPPDDEQENQKIFEELQKISKGRPLAEISPELS
                     ENTRFYVLGLAPNAARISVRFWLDTTFGQLAKNLSEHWQDLALEPCPWKTPPSIWRLL
                     LQTASLGKSENISPVLAGEMARAVISGHLYPMSLLSQLVTRIRADGDINGLRVALMKA
                     VLQRKFRKGFIKEGVPMSLNKESDNQAYLLGRLFAVLERIQSQALGELNAGIADRYYG
                     SASAVPFSVFPRLLSGAKHHLSRLRKDKGGMAVNLDKDLGEIIASLPENFPRHLSIDE
                     QGRFAIGYYHQKQSYFAKKETTESIEN"
     gene            complement(3860..4537)
                     /gene="cas5c"
                     /locus_tag="PXC99_002126"
     CDS             complement(3860..4537)
                     /gene="cas5c"
                     /locus_tag="PXC99_002126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas5"
                     /protein_id="HDL5418544.1"
                     /translation="MPNKIRLHIWGDYACFTRPEMKVERVSYDVITPSAARGILAAVH
                     WKPAIRWVIDKIYVLQPIQFESVRRNELGSKISASKISGAMKRKTVADLYTVIEDDRQ
                     QRAATVLKNVGYVIEAHAVLTKMAGEAETVTKHIEMFKRRAKKGQCFQQPCMGVREFA
                     ANFALIDDDEPLPECFLAENERDRDLGWMLHDIDFEHGNQPRFFRAEMKNGVIDVPPF
                     YAEEVKS"
     gene            complement(4779..6530)
                     /locus_tag="PXC99_002127"
                     /pseudo
     CDS             complement(4779..6530)
                     /locus_tag="PXC99_002127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250669.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF87 domain-containing protein"
     gene            complement(6520..6981)
                     /locus_tag="PXC99_002128"
     CDS             complement(6520..6981)
                     /locus_tag="PXC99_002128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418545.1"
                     /translation="MFKPHGSLDWFMAGDVPMTSCIGKVEEPLIITPGVGKYKKGYGQ
                     PFDAHREKANEAIDSASSILCIGYGFNDDHLQTHLTGKIKSGVKTLLLTRGLSENARN
                     VVKEAPNCKALIFDGDKAGTRVVSKQEETFIPNVHWWDVEFFVKEILENGK"
BASE COUNT         1996 a         1634 c         1328 g         2191 t
ORIGIN      
        1 attagaatta ccaatttttt ctgaaagata tttccaaaca ctacatacat cactttctat
       61 taaagcacta tctataatat ctacatcgta gaaatacacc caatcataca aagcaaaatg
      121 tatacatagg ttattttcat taatccattc caagactttt cttaattctt ttgaaccaag
      181 tttattaaaa aaattctttc ctattttact aaactttaat tccttattct gcaaatgaag
      241 gagttttctc caatcaggag caattaaatt agcattacta atttgagcaa tccctcctaa
      301 tacaaataca ggaggaaccc caatgtggga agaaatggtt ctattaaaat tactaccttt
      361 tttatcatta ggcgtatgtt ttaacttccc aatatttcca ccactctcat caagaaatat
      421 tttgtagtta tgctgtgcta tatttaatcc gtgaaatgat ctttctaagt ttgaagttat
      481 cacaacaagt ccctccccaa agtaggtaat tataataaag atccaaacac tcccaccaca
      541 taccccttcg atctatccct ttccaacaac tttggttggc agaggtcgat aagcgagcag
      601 gctttgcagc gtttgctgta ttctggagga ggtgtggttc cgctatctaa gagcgaccgc
      661 acttcggcaa tggtggcgag ggttttggtg cgtagttcgg tggaaaaaat gatcggcaaa
      721 cggtggcgag tttgcatata ccacaacgcc ccttcgttaa tcgtctgctc tgtcatttct
      781 tccaaacata aggcttgggc acagagttgg atttcatcaa tcggatcaag tttgggcttg
      841 ccacgtttgt attccactgg ttttagctcg cctgttttta ggtctcgctc aaccaaatcc
      901 aaaatgccgc ttatgcctaa tttttcggct gcaacgtgaa ccgttcgctc aaagcgaatc
      961 cctttgcgaa cttctggctc accactatct acccgctcgt gcaacgcttg accttgtgcg
     1021 gtgagatagt tttctgccca cacctgttcg ttgtggatca gcgcacattg acgtgggcag
     1081 aaggcatagt gttgcaaagc ggaaagcgaa attgaccgct tgtcatcgcc aaattttggc
     1141 tgaacaagcg gtaaaatttc cgcagaattt tgcaaatcgc ccattacagt aattcttcaa
     1201 cggttacacc cgttaagcct tcggtttgta cgctgataca gtaatcgtca tagtctttcg
     1261 ctggcgtgtc tttttcaccg ttgattcgct caacttttac cgagtcaaac agtttgtgtg
     1321 caggttggtt gcctaattcg ctgtcgtgtt taaatacgat cagtttacga gctgccattt
     1381 cgcctcgtgc ggcagaacgg tcgtgttcaa acataagttg caaggcttgc caaagttttt
     1441 gtacatcttc atcagaaaag cccgtttttt cagcgagttt agctgaaata aagccgtgaa
     1501 cacgataaag tgcgtaaggc acgatatatt tacgccccat agtccgttct ttttcaagat
     1561 ctttttcgtt ggtcactgcc attcgtgtga tcgatacttc tagcggaata atcggatcga
     1621 tagattgagc gaacgccaat tgcactgggc ctcgcacctg tccgctgttt acttcggtag
     1681 tcattaccgc cccaaaggtg cgaatatcga aaaagttttt gcacatccaa gcggtaattt
     1741 ctcgggcttt agcttcctct tttggtagtt ttttcgcttc cgattcaatc cctaatgctt
     1801 cataagcacg tttgttttgt aaattcagaa cacttttttc tttaacataa atttcgtaac
     1861 ccgcctcgtt ttcatagctc atttcaataa aattgcggat tttgcgtttt aggcaaacat
     1921 cggtgactaa acctttactg gtttcaggat caaggcgtgg catatttcct gcatctggat
     1981 caccatttgg gttaccgttg gttacatcaa agaaaaaaac aaattcatag cggttttgaa
     2041 tagacatagt gtttccttag ttttcaatag actcagtggt ttctttttta gcgaaatagc
     2101 tttgtttttg gtggtaataa ccaatcgcaa aacgcccttg ttcatcgata cttaaatggc
     2161 gagggaaatt ttccggcaag ctggcaataa tctcacctaa atccttatcc agattaaccg
     2221 ccattccgcc cttatctttt ctcaagcgag ataaatggtg ttttgcaccg cttaataagc
     2281 gagggaatac cgaaaacggc acggcagaag ccgaaccata atagcggtcg gcaatgccgg
     2341 catttaattc gcctaatgct tggctttgga ttctttctaa tactgcaaat aacctgccga
     2401 gcaagtaagc ttggttatcg ctttctttat ttaagctcat aggaactcct tctttaataa
     2461 aaccttttct aaattttcgt tgtaagactg ctttcatcaa cgctactcgc aaaccgttaa
     2521 tatcgccgtc tgctcggatt cgagtcacta actgtgaaag taaactcatc ggatataaat
     2581 gaccgctaat aactgcgcga gccatttcac ccgccaagac tggagaaata ttctcacttt
     2641 tacctaatga agcggtttgt aataatagtc gccaaatgga aggtggtgtt ttccatgggc
     2701 aaggctcaag agcgagatct tgccaatgct cgctgaggtt ttttgccagt tgcccaaagg
     2761 tggtatccag ccaaaaacgt accgaaatgc gagctgcatt tggagcaagc cccaacacat
     2821 aaaaacgggt gttttcagat aattctgggg aaatttctgc aagcggtcgt cctttgctga
     2881 ttttttgcaa ttcttcaaag attttttggt tttcttgctc atcatctgga ggcgtcatta
     2941 aagcagcaaa aaagccttca gcagcttcag cttgggtggt attgtctgct tctgcccaaa
     3001 agacagtgct ggcatcacca atagttaaac gatgtttctc ggtgcgtaac aaataattta
     3061 aagcagtagt gtaggcaaag gcggcttgtt cagaaacagg ggcattacta ccttgttcct
     3121 tgccaaatga agtgaaggat tctttattga aagagatgat tgaaccaccg gaactttgcc
     3181 caccaaatac ccctttaata ggaggatgag ttcgttgaat tggcgataat ttgcctgaaa
     3241 ttaagcataa acctttttca gcattatcac tttgatttat caacaaactt gtccaaaggg
     3301 tttgtgcagc ttctcgctga tgaatataac cgcttgtgcc gactaattta aacacgacat
     3361 tcgcatcaag aatttctctt gggcagattg attcggcaaa atgtgtgggt tgccattgtt
     3421 gcaggaaatt tcttatcgcc attaaacctt catcattgga atctgcaagc aaatccaaat
     3481 ggtactgttt aaatgcctca aaggttttct cggcgaaatt gatgggttga tctttggcgg
     3541 tggctttatc aggattactt tcaatgccta gcacataagc ggttttatcc cacagaaaat
     3601 tgggcttaat gccagacgtg cgtttttcag ggcgaggtac gctcatcaat ttcggttttg
     3661 gtttcttatc ttctgttaaa tttgagatca cattgaccaa atttcccttt gaatctaatt
     3721 ctagtaccca accgattttt tcttcactga aaccataaga aggcacttta gcttcgcctg
     3781 ttaagcgatc ttcttgtgct gcaaggcggt aataatagcg agttaaggcg gtaataatag
     3841 cgagttaagg cggagagaat catgatttga cctcctctgc ataaaatggt ggcacatcaa
     3901 tcacgccatt tttcatttcc gcacggaaga aacgaggttg attaccgtgc tcaaaatcaa
     3961 tgtcgtgcaa catccagcct aaatcccgat ctcgctcatt ttctgccaaa aaacactcag
     4021 gtaacggttc atcgtcatca atcaaggcaa aatttgcggc aaattcacgc acgcccatac
     4081 aaggctgctg gaaacattgc ccctttttcg cacggcgttt aaacatttca atatgcttgg
     4141 tgacggtttc cgcctcgcct gccattttgg tcagcactgc gtgagcttcg atcacataac
     4201 cgacattttt cagcacagta gcagcacgtt gttggcggtc gtcttcaatc acagtatata
     4261 aatccgccac tgttttacgc ttcattgcac cactgatttt actggcagaa attttactgc
     4321 ctaactcatt acggcgaaca gactcaaatt gaatcggttg taatacataa attttatcaa
     4381 tcacccagcg aattgccggc ttccaatgca ccgcagccaa aatcccccgt gccgcagacg
     4441 gcgtaatcac atcataagac acccgttcta ccttcatttc aggacgggta aaacaagcat
     4501 aatcacccca aatatggagc ctgattttgt ttggcataat agaatgctcc ttttaattat
     4561 gtaacacaca cctccccgaa gggaggtgaa atttctttag cttatattat aactgctttg
     4621 gtttcaaccc acgcactcag taaaatgcga aaaattttat ggcttattat attaagcggt
     4681 cggatttact tagaaagttg caaagttatt tgagtattta accgcttgta tttcaaaaat
     4741 agtcagaaaa ataacagcat tctaggtaca atatttttct aagaacgaac ttgtctccgc
     4801 aatgcctcta ctgcgtttga cacagcattt ggtttgggct cctggtttgc ccaatcagac
     4861 cagaattggc gtgtagcact ttctggggct atatgcggtt tagcaagttt gattcgtgta
     4921 ggtaatagaa tcgaatcgcc tagcaataac gcttcgccta aatcaagtaa cggcaatata
     4981 tcagtaattc caaccataga ttccggcaat aaacgcttta caacactttg atcttgacca
     5041 tttgttaatc gtaaaaccaa gaaattatta cattgactca aaattgttcg gcttacatct
     5101 gaaggacgtt ggctaacgac caacaaagac acgccatatt ttctaccttc tttcgcaatc
     5161 cgctcaaagg cttccaatgc gcgtttttcc gctgcttccg ctgaatctcg aacagggaga
     5221 tataaatgtg cttcatcgca aataatcgtt agtggatggc gggaatcttt atccatccaa
     5281 aattgaatgt tgtataaaag gcgggcaaga actcccgtaa caatcggtaa aacatccgac
     5341 gggacttccg aaaaatcaat aatttttatc cctttttcgc tctcagaagc agaaaacagt
     5401 tttgacaaca tattttccag ccacccatag ctgttgcact ctactggcgg ttggaacata
     5461 aaaccgcaac gtctgtcatc tattttggct ttcatccttc ccataaacct agacaactta
     5521 ctataccaag gaccttgctt tgttcctgaa cctccctctt taggtaccat ctcagaatta
     5581 tctttatcta aacgagctaa caataattca atagaatacg gaattggcga atcaacagta
     5641 aacgtttcca aaacatcatt tctttcttcc ttattcaatg tttgctcttt taatgcgcga
     5701 acatgctcag taaaacgcgc cgcctgattc ggagcattat catcactgcg atctaaaatt
     5761 aaagccagca tttattcccg attgagcagc caatagggaa taaataaact gcgttcatct
     5821 gaaccatcca aatctcccgg tccagcaata cggtattgct gagcgatagc gtttttacct
     5881 tcgcatagag tgctatattc accgtgcata tcgaatacaa taagattagc agcttttaaa
     5941 gctgctgcac gttccaatat taatgcaact gaccagcttt taccggaacc agtactaccc
     6001 aaaatagcag cgtgccgttg aaagaattta tctccgtttg ctatagctac agccgtttca
     6061 tcagccataa aatgacctaa agtcagccgt tcattttctt ttacgttagc ggacaaaaga
     6121 ttcataaata attgcagatt gctgccacta atatgaaagc aatctctatc aatttgcgga
     6181 aaacaatccg ctccccgctt aaaagtgttg ctcaaactac catcaacagc tttataagta
     6241 ccgattaata ctgccttgat aaagtcatcc tgactttcac ccagaggaat ttcaccctca
     6301 ttagatattt cttctagcag caatttttca ctgatagaac gcgttacccg ttcgataatg
     6361 ccgataaggt actcactagc cgttctgcct tgaatcgcaa tcagattacc cacagcaata
     6421 ctagtcattt gttgatgctc ttcaacagaa atcaatacac ggctggtatc tactgttaca
     6481 accctgccca aacgggcatt gtctttaaaa ttcaatgttt catttgccat tctctaaaat
     6541 ctcttttaca aaaaactcaa cgtcccacca atgaacatta ggaataaaag tttcttcttg
     6601 cttgctaacc acccttgttc cagccttatc tccatcaaaa atcagagcct tacaattcgg
     6661 agcttccttc accacgtttc tggcattttc tgaaagtcct cttgtcagaa gtagtgtttt
     6721 cacaccactt ttaattttgc ctgtcaaatg tgtttgaagg tggtcatcat taaaaccata
     6781 gccgatacat aaaattgaag aagcagaatc aatagcttca tttgcttttt ctcgatgagc
     6841 atcaaatggt tgtccatagc cttttttata cttcccaaca ccaggcgtaa taattaaagg
     6901 ctcttccact ttacctatac aacttgtcat tggaacgtct ccagccataa accaatctaa
     6961 actaccatgc ggtttaaaga ttttgatatg atctcgttga catcctcccc tgcctaaagg
     7021 caggggattc ctactagctc ccacagcaag ctgtgggcta ctctcggtgg gtttctactg
     7081 ctgatctcta ttgagattca cttcatagac gcttcgggta tgtcctaccc tgatatttat
     7141 tatgcttgg
//
LOCUS       DANLVT010000121         7063 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.121, whole genome shotgun sequence.
ACCESSION   DANLVT010000121 DANLVT010000000
VERSION     DANLVT010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7063)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7063)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7063
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.121"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..1278)
                     /locus_tag="PXC99_002129"
     CDS             complement(<1..1278)
                     /locus_tag="PXC99_002129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HDL5418546.1"
                     /translation="MQEAYDIQHLCTRKEDKSFDRKSARKEPKEILRHLIGFANADGG
                     LLVIGIEDNGEITGFNYQKAHQPEEFIHALHNLQKMPIPVTYQQIEVVNSRGLADFVL
                     LFEVTASSGRVITSHDDRVFLRSKDQTLELNFEQRLQLEYEKGQRAFEEQPIARADFT
                     DLDMDLLEQYRQKLHTDRSIEEILKARDLINKEGQITNACILLFGNNPTRYFPNARLR
                     FLRYEGKAPLTGRTFNVVKEFMLEEPIPKLLESAKAVLKSQLREFQRLDENGQFTKID
                     EYPEFAWLEGIVNAIAHRSYSNQGDCIRISMFDDRLEIFSPGGLPRPVTLENMYYTRF
                     SRNPKIARVLYEFGWVKELNEGVNRMAEEMNAYQLNTPSYFEPNENAVRLILENNIEH
                     RTLRALERIEEIFTQDIMATLNKNEVTILQYLYE"
     gene            complement(1378..1782)
                     /locus_tag="PXC99_002130"
     CDS             complement(1378..1782)
                     /locus_tag="PXC99_002130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005557532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehydratase"
                     /protein_id="HDL5418547.1"
                     /translation="MHKFTFPIEQIAPLVPHSGNMILLDRITAFGEDFLTAETNIRPD
                     NPLIKHGKLATYASIEIMAQAGEPVRLGYLLGTRKLHLHRQEIPIGSQLQIQIKMSIQ
                     DATGFGVFDCQLIDLADNQVLLEGALNVFSPK"
     gene            complement(1775..2997)
                     /locus_tag="PXC99_002131"
                     /pseudo
     CDS             complement(1775..2997)
                     /locus_tag="PXC99_002131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005544283.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
     gene            complement(3084..3503)
                     /locus_tag="PXC99_002132"
     CDS             complement(3084..3503)
                     /locus_tag="PXC99_002132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418548.1"
                     /translation="MLRLLSFCFIFLLSACTVLPQIKQLPPQVESVKSFKVENNGQQS
                     LLLIQFYENKWRWIQTDPLGAPIARVWLTKKGWEPDGFVMPNKQAQLLFTALVNALNP
                     HSPPFYLDKGWKIEREKSQFTIWLPDSSKWKVEILGE"
     gene            complement(3565..4254)
                     /gene="rplA"
                     /locus_tag="PXC99_002133"
     CDS             complement(3565..4254)
                     /gene="rplA"
                     /locus_tag="PXC99_002133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HDL5418549.1"
                     /translation="MAKLTKKMKAIKAGVDSTKAYDINEAVEVLKKFATAKFVESVDV
                     AVNLGIDSRKSDQNVRGATVLPHGTGRTARVAVFTQGANAEAAKAAGADLVGMEDLAE
                     QIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQ
                     IRYRNDKNGIIHTTIGKADFSAEQLKDNLNALLAALTKAKPTTAKGIFIKKVSISTTM
                     GAGVAVDQASL"
     gene            complement(4259..4687)
                     /gene="rplK"
                     /locus_tag="PXC99_002134"
     CDS             complement(4259..4687)
                     /gene="rplK"
                     /locus_tag="PXC99_002134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006121495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HDL5418550.1"
                     /translation="MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNA
                     RTESLEKGLPIPVVITVYADKSFTFVTKTPPAAVLLKKAVGIKSGSGKPNKDKVGTVT
                     QEQIRQIAETKAADMTGATIETKMKSIAGTARSMGLIVEE"
     gene            complement(4920..5483)
                     /gene="nusG"
                     /locus_tag="PXC99_002135"
     CDS             complement(4920..5483)
                     /gene="nusG"
                     /locus_tag="PXC99_002135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HDL5418551.1"
                     /translation="MSEVEVKENGSKRWYVLQAFSGFENRVAVTLREYIKLHKMEEQF
                     GEVLVPTEEVVENVGGKRRKTERKFFPGYVLVEMEMNDDTWHLVKSVPRVMGFIGGTA
                     DRPAPITKREADRILNRVQETAEKPRHRKEFQPGESILVTEGPFADFSGTVEEVDYEK
                     GRLKVSVSIFGRATPVELEFSQVEKQS"
     gene            complement(5485..5898)
                     /gene="secE"
                     /locus_tag="PXC99_002136"
     CDS             complement(5485..5898)
                     /gene="secE"
                     /locus_tag="PXC99_002136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HDL5418552.1"
                     /translation="MATEIKTKTPEQVEQKGGKSKGANTALWLVAIVFLAVAAVGNAY
                     FSSHFSLIVRVLLLVVLLVGAVALAAITNQGQKAIHFIKESRTELRKIIWPTRPEATQ
                     TTLIVLAMCVVVSLVLWGIDSIIVALITFVTSLRF"
     gene            complement(6011..7033)
                     /locus_tag="PXC99_002137"
     CDS             complement(6011..7033)
                     /locus_tag="PXC99_002137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5418553.1"
                     /translation="MANGTSRNRRSSGRVTLADVAKVVGVGQMTVSRALRTPEMVSEP
                     LRKRIEEAIIELGYIPHFSARQLASAESHNLVIVTTSISSTENTLILSALRKSVADSA
                     LQMVILIADQESWFQELINHAPQAIVFLNLDCPPNVREWIKNSNIPTVEIGAIKKEPI
                     HLSVGIDSHEAMEKMIHFLVKKGYREIGLLSAKQDLSIFKQYLESWHTTLFAHHISPL
                     KIHHVVEDISFSAGATLLTEALLNWEAIDALVFLSDELACGALYEALRRHMSIPKDLA
                     IAGLGGLEVGSISYPKLTTIAIPYEQMGKIAGKQLLTLLSGKTLSAEEMIVKLPTKLV
                     IRDSAA"
BASE COUNT         1945 a         1575 c         1379 g         2164 t
ORIGIN      
        1 ttcatataaa tattgcagga tagtaacttc atttttattt aatgtcgcca taatatcctg
       61 cgtaaaaatt tcttctattc gttctaatgc ccttaatgtc cgatgttcaa tattattttc
      121 taaaatcagt ctgaccgcat tttcattggg ttcaaagtaa gaaggtgtat taagttggta
      181 agcgttcatt tcctccgcca tacgattaac accttcattc agctctttga cccaaccaaa
      241 ttcatacagc actcgtgcaa tcttcggatt gcgtgaaaaa cgggtatagt acatattttc
      301 aagcgtcaca gggcgaggta atccacccgg actaaaaatt tccaaacggt catcaaacat
      361 cgaaatgcga atgcagtccc cttgattact gtaactacgg tgtgcaatcg cattgacaat
      421 accttctaac caagcaaatt ctggatactc atcaattttt gtgaattgcc cgttttcatc
      481 taaacgttgg aactctcgta attggctttt taatactgcc ttagcactct ccaataactt
      541 aggaataggc tcttcaagca taaattcttt gacgacatta aaagttctac cggtcagagg
      601 tgctttacct tcataccgca aaaaacgcaa acgggcatta ggaaaataac gtgtcgggtt
      661 attcccaaat agcaaaatac aggcattcgt aatttgccct tctttgttaa ttaaatctcg
      721 ggctttcaga atctcttcta ttgagcgatc tgtgtgtaat ttctgtcgat actgttctaa
      781 taaatccata tccagatcag taaaatcagc gcgtgctatc ggttgctctt caaaagcacg
      841 ctgccctttt tcgtactcta attgcaaacg ttgttcaaaa ttgagttcca aagtttgatc
      901 ttttgagcgt agaaaaaccc gatcatcgtg agaggtaatc accctcccac tcgaagctgt
      961 aacttcaaat aataagacaa aatccgctaa acctcgacta tttaccacct caatttgctg
     1021 ataggtcacc ggtatcggca ttttttgtaa attgtgcaga gcgtggataa attcttccgg
     1081 ctgatgggct ttttggtagt taaaaccggt aatttcgcca ttatcttcaa taccaataac
     1141 taataaaccg ccgtctgcat tcgcaaaacc aatcaaatgc cgcaaaatct ctttcggttc
     1201 ttttctcgca cttttgcgat caaaggattt atcttctttg cgagtacaaa gatgttgaat
     1261 gtcataggcc tcttgcataa cgaatttcct accaactact accaactact accaactact
     1321 accaactact acttactact acttactact acttactact acttactact accaactcta
     1381 tttcggacta aacacattca gcgccccttc taaaagcact tggttgtcgg ctaaatcgat
     1441 cagttggcag tcgaatacgc cgaagccggt ggcatcttga atagacattt tgatctgaat
     1501 ttgtagctgt gagccaatcg ggatttcttg gcggtggagg tgcagtttgc gagtgccgag
     1561 caggtagcct aagcgaactg gttcgccggc ttgtgccata atttcaatgc tggcgtaggt
     1621 ggcaagtttt ccgtgtttga tcagcggatt gtcagggcga atattggttt cagcggtcaa
     1681 aaaatcctcg ccgaatgcgg taatgcggtc gagtaggatc atattgccac tgtgaggaac
     1741 caatggtgca atttgttcga tagggaaggt gaatttatgc atcgctttct cccaaaatca
     1801 gtacgctgtt attgccgcca aaggcaaaag agctgcttgc gccaatccgt ctgcctgctg
     1861 cccaacggct ctgttcatcg gtgatcgcaa tgttcggcag gttttcgtcc gcttgtttat
     1921 cccataattg cgcagggagc ttgccggtcg ggttgtgttg gcgacagagc attccccaca
     1981 aaattgccgc ttccaccgca ccggcagccc aagggtatgc ccggtgtagg gtttggtggt
     2041 ggtgcaagcg gtctgattac cgaagatttt tgccacagcg aggctttcca tttgatcgtt
     2101 atgaagcgtc cctgtgccgt gcaggttgat ccagccgatg tcggctgcgt ctaaatcagc
     2161 attgtgcagg gcattttgga aagcggaaat tgccccttcc ccttcggggt gaggtgagga
     2221 catatggtaa gcgtccgagc tggaaccata acccagtaac tgaatgcgat gttcgtccag
     2281 tggttcacgg ctcatcacaa acaccgctgc gccttcgccg atgttaatgc cgttacggtt
     2341 agcggaaaat gggttggttt gttggtttga taacacttcc agcgagctaa atccgctgat
     2401 agttaaaggc gaaagggtat ccacaccacc gcaaatcacc gcatcgcaca agccggcttt
     2461 cagtaaacgg gcagcagaaa ttaacgctct tgcctctgag gtgcaggcgg tggaaatgcc
     2521 gtaactcagc cccgttaagc catacacttc ggcaacgaaa tcagacggcg cagagaagag
     2581 aatttgctgt tgattaaact gctcggtggc ataatcgccc tgcacaccgg ctttgaagac
     2641 gggaatattt tcatcggcgc cggtagtgga cgtgccgatg atcaccgcaa tccgctcacg
     2701 cccgaattgc tcgatacaag cggtaatttt cggctcaatt tctgcaaggg cgtgccatag
     2761 cagttggtta ttgcggctgc ggtgttcaat agatagttca acaggaaaat cacgcaatct
     2821 agcagagact tgccctagaa atttcggtga actatttgaa atattatgtc gtaaataagg
     2881 ctgtgaagtc gtatctaaag gagatacttt cgcattaatt aaaacattca aatgctccac
     2941 gatgccatat ccaatcggac tggtgatggc gggctctgat aaatatagtg tcattattat
     3001 ttattccagt attattgtgt aatggcacta aaattataaa attcatattc aagtgattca
     3061 agcatagagg ttcaagtttt cgcttattcc cccaatattt ccactttcca tttactgcta
     3121 tctggtagcc aaatcgtaaa ttgggatttt tccctctcaa ttttccaacc tttatctaaa
     3181 taaaaaggtg gagaatgagg gtttaatgca ttgactaaag ctgtaaataa tagctgtgcc
     3241 tgcttatttg gcattacaaa gccatctggc tcccaacctt ttttagtaag ccatactctg
     3301 gcaataggag cacctaaagg atcagtttga atccaacgcc atttattttc ataaaattga
     3361 attagaagca aactttgctg gccattattt tcaactttaa aggattttac agattcaacc
     3421 tgtggcggta attgcttaat ttgaggtaat acagtacaag cactaagcaa aaaaataaag
     3481 caaaaagata ataatcttaa cattcgtacc taaagaaaaa gaccgtagag tattaacact
     3541 acggtctttt gattctatta aaaattaaag tgatgcttga tcaaccgcaa caccagcacc
     3601 cattgtagta gagatgctta ctttcttgat gaagatacct tttgctgttg ttggttttgc
     3661 ttttgttaaa gcagctaaca atgcgtttaa gttatctttt aattgttcag ctgagaagtc
     3721 tgctttaccg atagtagtgt ggataatacc gtttttgtcg ttacggtagc ggatctgacc
     3781 agatttcgca tttttaaccg cttctgcaac gtttggtgtt actgtaccta ctttcgggtt
     3841 tggcattaag ccgcgtggac ctaatacttg acctaattga cctacaacac gcattgcatc
     3901 tggagaagcg ataacaacat caaagttcat ttcgcctttc ttgatttgct ctgcaagatc
     3961 ttccataccc actaagtcag cacccgctgc ttttgctgct tctgcgtttg caccttgtgt
     4021 aaacacagca acacgagcgg tacggcctgt accgtgtggt aatacggttg caccacgcac
     4081 gttttggtct gatttacgag aatcgatacc taagtttaca gcaacgtcca cgctctcaac
     4141 gaatttagcg gttgcgaatt tttttaacac ttcaactgct tcgttgatgt cataagcttt
     4201 agtagaatct acgccagctt taattgcttt cattttttta gtcaatttag ccattgtatt
     4261 attcctctac gattaagccc attgagcgag ctgtaccagc gattgatttc attttggttt
     4321 cgatagtcgc accagtcata tctgctgctt tagtttcagc gatttgacgg atttgctctt
     4381 gagttactgt acccacttta tctttgttcg gtttaccaga accagatttg atacctaccg
     4441 cttttttcag tagcactgcc gccggtggag ttttggtaac gaatgtgaaa gatttatcag
     4501 cgtaaactgt gataacaacc ggaatcggta aacctttctc taagctctca gtacgagcgt
     4561 tgaatgcttt acagaattcc ataatgttaa caccttgttg acctaatgca ggaccaaccg
     4621 gtggtgatgg gttagccata cccgctgcaa cttgcagttt aacgtaggct tggacttttt
     4681 ttgccatttt aattttcctc taaatgggtg ataacgctga aaatcagctc ccctgttaca
     4741 taaaaaatac gagtcagcag gctggctcgt aataggtcgc aaattttaaa gaatttgcga
     4801 ctatttttca agcaaaactt tcgctttgtt gaataaatct tgttacaagc ggtctttttt
     4861 ccgctgaatt ttgcaaaaaa ttgagaaaaa taaccgcttg tgtgtgaaat taattgaaat
     4921 tagctctgct tttccacttg actgaattct aattctaccg gtgtcgcacg accaaaaatc
     4981 gacaccgata cttttaagcg acctttttcg taatccactt cttcgaccgt accggagaaa
     5041 tctgcaaacg gaccttctgt aaccaaaatg ctttcgcccg gttggaattc ttttctgtgg
     5101 cgtggttttt ccgctgtttc ttgtacacgg tttagaatgc ggtctgcttc acgtttggta
     5161 attggtgcgg ggcgatctgc cgtaccacca ataaagccca ttacacgagg cacacttttc
     5221 actaaatgcc aagtatcgtc attcatttcc atttcaacca atacataacc tgggaagaat
     5281 ttacgctcgg ttttacggcg tttaccgccc acattttcaa cgacttcttc ggttggcact
     5341 aatacttcac caaactgctc ttccattttg tgaagcttaa tgtattcacg caatgttact
     5401 gccacacggt tttcaaagcc tgaaaacgct tgtaatacat accagcgttt tgagccattt
     5461 tctttcactt ctacttcact cattttagaa ccttaaactt gttacaaatg taattaatgc
     5521 gacgatgatt gagtcaatac cccataaaac caaggaaact actacgcaca ttgccaatac
     5581 aatcaaggtg gtttgtgttg cttcagggcg tgtcggccag ataattttgc gtagttcggt
     5641 tcgagactct ttaataaaat gaattgcctt ttgcccctga tttgtaattg ccgctagtgc
     5701 aacagcacca actagcaaca ccaccaataa aagcactcga acaattaatg aaaaatgaga
     5761 tgaaaaatag gcattaccta ccgcagcaac tgctaaaaat acaatcgcaa ccagccataa
     5821 tgctgtattt gcacctttgc ttttcccccc tttttgttcg acttgctcgg gggtttttgt
     5881 tttaatctca gtagccatat ataacctaaa aaatgaataa aaaaatcaga aattatttta
     5941 aagcgttaaa ttctatcatt ttctacaaga cttgccacga tcttttatag atttttatgc
     6001 aaaatcaata ttatgcggcg ctatcacgaa tcactagctt agtcggtaat ttaacaatca
     6061 tctcttctgc tgataaggtt ttaccactca aaagagtaag tagttgttta cctgctattt
     6121 ttcccatttg ctcgtaaggg atcgcaatgg ttgtcaattt agggtaggaa atactcccca
     6181 cttctaaacc acctaaaccg gcaatcgcaa gatcttttgg aatgctcata tgtcggcgta
     6241 atgcttcata taatgctccg caagccaatt catcggataa aaaaaccaat gcatctattg
     6301 cttcccaatt tagaagggct tcagtcaaca aagttgctcc tgccgaaaac gaaatatcct
     6361 ctactacgtg gtggattttt aaaggagaaa tatgatgtgc aaataaagtc gtatgccaac
     6421 tttctaaata ttgtttgaag atggataaat cttgcttcgc cgataacaat ccaatctctc
     6481 gatagccttt tttcaccaaa aaatggatca ttttctccat tgcttcgtgg ctatcaattc
     6541 caacactgag atgaatcggt tcttttttta tcgcacctat ttctacggta gggatattgc
     6601 tgtttttaat ccactcacgg acattaggag ggcaatctaa attcaaaaac actatcgctt
     6661 gaggagcatg attaatcagt tcttgaaacc aagattcttg atcagcgatc aaaatcacca
     6721 tttgcaatgc ggaatccgcc acgcttttgc gtaatgccga taaaattaag gtattttccg
     6781 ttgagctaat cgacgtcgtc acaatgacca aattatgtga ttctgcagaa gctaattgcc
     6841 gagcagaaaa atgcggaata tatcctagtt caatgattgc ctcttcaatc cgtttacgta
     6901 gtggctccga caccatttct ggtgtacgca aagcacgaga taccgtcatc tgcccaacac
     6961 caacaacttt ggctacatca gctaaagtga ctctgcccga agatcttcga tttctacttg
     7021 ttccatttgc catactattt tcctaattgt tccatattat agg
//
LOCUS       DANLVT010000122         6737 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.122, whole genome shotgun sequence.
ACCESSION   DANLVT010000122 DANLVT010000000
VERSION     DANLVT010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6737
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.122"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..140
                     /locus_tag="PXC99_002138"
     CDS             <1..140
                     /locus_tag="PXC99_002138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="leukotoxin-activating lysine-acyltransferase
                     LktC"
                     /protein_id="HDL5418554.1"
                     /translation="KQKELGKIAYFKGGKLDKKTAKKRFDTYQEELATALKNEFNFIK
                     K"
     gene            156..3017
                     /locus_tag="PXC99_002139"
     CDS             156..3017
                     /locus_tag="PXC99_002139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RTX family hemolysin"
                     /protein_id="HDL5418555.1"
                     /translation="MGTRLTTLSNGLKNTLTATKSGLHKAGQSLTQAGSSLKTGAKKI
                     ILYIPQNYQYDTEQGNGLQDLVKAAEELGIEVQREERNNIATAQTSLGTIQTAIGLTE
                     RGIVLSAPQIDKLLQKTKAGQALGSAESIVQNANKAKTVLSGIQSILGSVLAGMDLDE
                     ALQNNSNQHALAKAGLELTNSLIENIANSVKTLDEFGEQISQFGSKLQNIKGLGTLGD
                     KLKNIGGLDKAGLGLDVISGLLSGATAALVLADKNASTAKKVGAGFELANQVVGNITK
                     AVSSYILAQRVAAGLSSTGPVAALIASTVSLAISPLAFAGIADKFNHAKSLESYAERF
                     KKLGYDGDNLLAEYQRGTGTIDASVTAINTALAAIAGGVSAAAAGSVIASPIALLVSG
                     ITGVISTILQYSKQAMFEHVANKIHNKIVEWEKNNHGKNYFENGYDARYLANLQDNMK
                     FLLNLNKELQAERVIAITQQQWDNNIGDLAGISRLGEKVLSGKAYVDAFEEGKHIKAD
                     KLVQLDSANGIIDVSNSGKAKTQHILFRTPLLTPGTEHRERVQTGKYEYITKLNINRV
                     DSWKITDGAASSTFDLTNVVQRIGIELDNAGNVTKTKETKIIAKLGEGDDNVFVGSGT
                     TEIDGGEGYDRVHYSRGNYGALTIDATKETEQGSYTVNRFVETGKALHEVTSTHTALV
                     GNREEKIEYRHSNNQHHAGYYTKDTLKAVEEIIGTSHNDIFKGSKFNDAFNGGDGVDT
                     IDGNDGNDRLFGGKGDDILDGGNGDDFIDGGKGNDLLHGGKGDDIFVHRKGDGNDIIT
                     DSDGNDKLSFSDSNLKDLTFEKVKHNLVITNSKKEKVTIQNWFREADFAKEVPNYKAT
                     KDEKIEEIIGQNGERITSKQVDDLIAKGNGKITQDELSKVVDNYELLKHSKNVTNSLD
                     KLISSVSAFTSSNDSRNVLVAPTSMLDQSLSSLQFARAA"
     gene            3092..5218
                     /locus_tag="PXC99_002140"
     CDS             3092..5218
                     /locus_tag="PXC99_002140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_063101322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I secretion system permease/ATPase"
                     /protein_id="HDL5418556.1"
                     /translation="MEANHQRNDLGLVALTMLAQYHNISLNPEEIKHKFDLDGKGLSL
                     TAWLLAAKSLALKAKHIKKEISRLHLVNLPALVWQDNGKHFLLVKVDTDNNRYLTYNL
                     EQDAPQILSQDEFEACYQGQLILVTSRASVVGQLAKFDFTWFIPAVIKYRKIFLETLI
                     VSIFLQIFALITPLFFQVVMDKVLVHRGFSTLNIITVALAIVIIFEIVLSGLRTYVFS
                     HSTSRIDVELGAKLFRHLLSLPISYFENRRVGDTVARVRELDQIRNFLTGQALTSVLD
                     LLFSFIFFAVMWYYSPKLTLVILGSLPCYILWSIFISPILRRRLDEKFARSADNQAFL
                     VESVTAINMIKAMAVAPQMTDTWDKQLASYVSSSFRVTVLATIGQQGVQLIQKTVMVI
                     NLWLGAHLVISGDLSIGQLIAFNMLSGQVIAPVIRLAQLWQDFQQVGISVTRLGDVLN
                     SPTEQYQGKLSLPEIKGDISFKNIRFRYKPDAPTILNNVNLEIRQGEVIGIVGRSGSG
                     KSTLTKLLQRFYIPENGQVLIDGHDLALADPNWLRRQIGVVLQDNVLLNRSIRENIAL
                     SDPGMPMERVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN
                     PKILIFDEATSALDYESEHIIMQNMQKICQGRTVILIAHRLSTVKNADRIIVMEKGEI
                     VEQGKHHELLQNSNGLYSYLHQLQLN"
     gene            5230..6666
                     /locus_tag="PXC99_002141"
     CDS             5230..6666
                     /locus_tag="PXC99_002141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_140441352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family type I secretion periplasmic adaptor
                     subunit"
                     /protein_id="HDL5418557.1"
                     /translation="MKIWLSGIYEFFLRYKNIWAEVWKIRKELDHPNRKKDESEFLPA
                     HLELIETPVSKKPRLIAYLIMLFLVVAIVLASVSKVEIVATAPGKLTFSGRSKEIKPI
                     ENAIVQEIFVKDGQFVEKGQLLVSLTALGSDADIKKTMASLSLAKLENYRYQTLLTAI
                     EKESLPVIDLSRTEFKDSSEEDRLRIKHLIEEQYTTWQKQKTQKTLAYKRKEAEKQTI
                     FAYVRKYEGATRIEQEKLKDFKALYKQKSLSKHELLAQENKLIEAQNELAVYRSKLNE
                     LENDLLNVKEELELITQFFKSDVLEKLKQHIENERQLRLELEKNNQRRQASMIRAPVS
                     GTVQQLKIHTIGGVVTTAETLMIIVPEDDVLEATALVPNKDIGFVAAGQEVIIKVETF
                     PYTRYGYLTGRIKHISPDAIEQPNVGLVFNATIAIDRKNLTSPDGRKIDLSSGMTITA
                     EIKTGERSVMSYLLSPLEESVTESLRER"
BASE COUNT         2243 a         1182 c         1388 g         1924 t
ORIGIN      
        1 caaagcagaa agaattaggc aaaattgcct actttaaagg aggtaaatta gataaaaaaa
       61 cagcaaaaaa acgttttgat acatatcaag aagagctggc aacagcactt aaaaatgaat
      121 ttaattttat taaaaaatag aaggagacat cccttatggg aactagactt acaaccctat
      181 caaatgggct aaaaaacact ttaacggcaa ccaaaagtgg cttacataaa gccggtcaat
      241 cattaaccca agccggcagt tctttaaaaa ctggggcaaa aaaaattatc ctctatattc
      301 cccaaaatta ccaatatgat actgaacaag gtaatggttt acaggattta gtcaaagcgg
      361 ccgaagagtt ggggattgag gtacaaagag aagaacgcaa taatattgca acagctcaaa
      421 ccagtttagg cacgattcaa accgctattg gcttaactga gcgtggcatt gtgttatccg
      481 ctccacaaat tgataaattg ctacagaaaa ctaaagcagg ccaagcatta ggttctgccg
      541 aaagcattgt acaaaatgca aataaagcca aaactgtatt atctggcatt caatctattt
      601 taggctcagt attggctgga atggatttag atgaggcctt acagaataac agcaaccaac
      661 atgctcttgc taaagctggc ttggagctaa caaattcatt aattgaaaat attgctaatt
      721 cagtaaaaac acttgacgaa tttggtgagc aaattagtca atttggttca aaactacaaa
      781 atatcaaagg cttagggact ttaggagaca aactcaaaaa tatcggtgga cttgataaag
      841 ctggccttgg tttagatgtt atctcagggc tattatcggg cgcaacagct gcacttgtac
      901 ttgcagataa aaatgcttca acagctaaaa aagtgggtgc gggttttgaa ttggcaaacc
      961 aagttgttgg taatattacc aaagccgttt cttcttacat tttagcccaa cgtgttgcag
     1021 caggtttatc ttcaactggg cctgtggctg ctttaattgc ttctactgtt tctcttgcga
     1081 ttagcccatt agcatttgcc ggtattgccg ataaatttaa tcatgcaaaa agtttagaga
     1141 gttatgccga acgctttaaa aaattaggct atgacggaga taatttatta gcagaatatc
     1201 agcggggaac agggactatt gatgcatcgg ttactgcaat taataccgca ttggccgcta
     1261 ttgctggtgg tgtgtctgct gctgcagccg gctcggttat tgcttcaccg attgccttat
     1321 tagtatctgg gattaccggt gtaatttcta cgattctgca atattctaaa caagcaatgt
     1381 ttgagcacgt tgcaaataaa attcataaca aaattgtaga atgggaaaaa aataatcacg
     1441 gtaagaacta ctttgaaaat ggttacgatg cccgttatct tgcgaattta caagataata
     1501 tgaaattctt actgaactta aacaaagagt tacaggcaga acgtgtcatc gctattactc
     1561 agcagcaatg ggataacaac attggtgatt tagctggtat tagccgttta ggtgaaaaag
     1621 tccttagtgg taaagcctat gtggatgcgt ttgaagaagg caaacacatt aaagccgata
     1681 aattagtaca gttggattcg gcaaacggta ttattgatgt gagtaattcg ggtaaagcga
     1741 aaactcagca tatcttattc agaacgccat tattgacgcc gggaacagag catcgtgaac
     1801 gcgtacaaac aggtaaatat gaatatatta ccaagctcaa tattaaccgt gtagatagct
     1861 ggaaaattac agatggtgca gcaagttcta cctttgattt aactaacgtt gttcagcgta
     1921 ttggtattga attagacaat gctggaaatg taactaaaac caaagaaaca aaaattattg
     1981 ccaaacttgg tgaaggtgat gacaacgtat ttgttggttc tggtacgacg gaaattgatg
     2041 gcggtgaagg ttacgaccga gttcactata gccgtggaaa ctatggtgct ttaactattg
     2101 atgcaaccaa agagaccgag caaggtagtt ataccgtaaa tcgtttcgta gaaaccggta
     2161 aagcactaca cgaagtgact tcaacccata ccgcattagt gggcaaccgt gaagaaaaaa
     2221 tagaatatcg tcatagcaat aaccagcacc atgccggtta ttacaccaaa gataccttga
     2281 aagctgttga agaaattatc ggtacatcac ataacgatat ctttaaaggt agtaagttca
     2341 atgatgcctt taacggtggt gatggtgtcg atactattga cggtaacgac ggcaatgacc
     2401 gcttatttgg tggtaaaggc gatgatattc tcgatggtgg aaatggtgat gattttatcg
     2461 atggcggtaa aggcaacgac ctattacacg gtggcaaggg cgatgatatt ttcgttcacc
     2521 gtaaaggcga tggtaatgat attattaccg attctgacgg caatgataaa ttatcattct
     2581 ctgattcgaa cttaaaagat ttaacatttg aaaaagttaa acataatctt gtcatcacga
     2641 atagcaaaaa agagaaagtg accattcaaa actggttccg agaggctgat tttgctaaag
     2701 aagtgcctaa ttataaagca actaaagatg agaaaatcga agaaatcatc ggtcaaaatg
     2761 gcgagcggat cacctcaaag caagttgatg atcttatcgc aaaaggtaac ggcaaaatta
     2821 cccaagatga gctatcaaaa gttgttgata actatgaatt gctcaaacat agcaaaaatg
     2881 tgacaaacag cttagataag ttaatctcat ctgtaagtgc atttacctcg tctaatgatt
     2941 cgagaaatgt attagtggct ccaacttcaa tgttggatca aagtttatct tctcttcaat
     3001 ttgctagagc agcttaattt ttaatgattg gcaactctat attgtttcac acattataga
     3061 gttgccgttt tattttataa aaggagacaa tatggaagct aaccatcaaa ggaatgatct
     3121 tggtttagtt gccctcacta tgttggcaca ataccataat atttcgctta atccggaaga
     3181 aataaaacat aaatttgatc ttgacggaaa agggctttct ttaactgctt ggcttttagc
     3241 tgcaaaatcg ttagcgttga aagcgaaaca cattaaaaaa gagatttccc gcttacactt
     3301 ggtgaattta ccggcattag tttggcaaga taacggtaaa cattttttat tggtaaaagt
     3361 ggataccgat aataaccgct atttaactta caatttggaa caagatgctc cacaaattct
     3421 gtcacaagac gaatttgaag cctgctatca agggcagtta attttggtca cgtccagagc
     3481 ttccgtagta ggtcaattag caaagttcga tttcacctgg tttattccgg cggtgatcaa
     3541 ataccgaaaa atctttctag aaaccttgat tgtttcgatc tttttgcaaa tttttgccct
     3601 aattacaccg ctattcttcc aagttgttat ggataaagta ctggtgcatc gaggtttttc
     3661 aaccttgaat atcattacgg ttgccttagc tattgtgatc atctttgaaa ttgtactaag
     3721 tggtttgaga acctatgttt tttctcatag cactagccgt attgatgttg aattaggcgc
     3781 taaattattt cgacatttat tatcactacc catttcttat tttgaaaaca gacgagttgg
     3841 agatacagtc gctagggtta gagaattaga tcaaattcgt aatttcctta ccggacaagc
     3901 attaacctcg gtgttagatc tcttattctc ttttatcttt tttgccgtaa tgtggtatta
     3961 cagcccaaaa ttaaccttgg taattcttgg ttcattgccc tgctatattt tatggtcaat
     4021 ttttattagt ccgattttaa gacggcgttt agatgagaaa tttgcccgaa gtgctgataa
     4081 ccaagcattc ttagttgagt cggtaacagc catcaatatg attaaagcga tggcggttgc
     4141 tccacaaatg acggatacat gggataaaca gctggcaagc tatgtttcat caagtttccg
     4201 tgtcaccgta ttagcaacca ttgggcaaca aggtgtacaa cttattcaaa aaaccgttat
     4261 ggtgattaac ctttggttag gggcacactt agttatttca ggcgatctga gtattgggca
     4321 attaattgcc tttaatatgc tatcagggca agtgattgca ccggtgattc ggctggctca
     4381 gctctggcaa gatttccaac aagttgggat ttccgtcact cgcttaggtg atgttttaaa
     4441 ctctccaacc gaacaatatc aaggcaaatt atcactacca gaaataaaag gcgatatctc
     4501 atttaaaaat atccgcttta gatataaacc agatgcacca actattttaa ataatgtgaa
     4561 tttagaaatt aggcaaggag aagtgattgg gattgttgga cgttccggtt caggcaaaag
     4621 tactctgact aaattactgc aacgttttta tattcctgaa aatgggcagg ttttgattga
     4681 tggacatgat ctagccttag ctgatccaaa ctggctacgc cgtcaaatag gtgtagtgct
     4741 gcaagataat gtgttattaa accgcagtat ccgagaaaat attgcgctat cagatccagg
     4801 aatgccaatg gagcgagtaa tttatgcagc aaaattagca ggggctcacg attttatttc
     4861 agaattgcgt gaaggttata acaccattgt gggtgaacaa ggagcggggc tttcaggcgg
     4921 gcaacgccaa cggattgcga ttgctcgagc tttggtaaac aacccgaaaa tcctgatttt
     4981 tgatgaggca accagtgccc tcgattacga atctgagcat attattatgc aaaatatgca
     5041 aaaaatatgc caaggcagaa ccgtgatttt gattgcacat cgtttatcga ccgtcaaaaa
     5101 tgcggatcga attattgtga tggaaaaggg ggaaattgtt gagcaaggca agcaccacga
     5161 attactgcaa aacagtaacg gactttattc ctacttacac caattacaac ttaattaaga
     5221 aggaaaacaa tgaaaatatg gcttagtggt atttatgaat ttttcctacg ctataaaaac
     5281 atttgggcag aagtatggaa aattcgtaaa gaattagacc acccaaacag aaaaaaagac
     5341 gaaagtgaat ttttaccggc acatttagaa ctgattgaaa ccccggtttc taaaaaacca
     5401 cgtctaattg cttatttgat tatgctattt ttagttgtgg caattgtgct tgccagtgta
     5461 agcaaagttg aaattgtggc gactgctccc ggtaaattaa cttttagtgg cagaagtaaa
     5521 gaaattaaac cgattgaaaa cgccattgta caagaaattt tcgttaaaga tgggcagttt
     5581 gtggaaaaag ggcaattatt agtcagctta actgcattgg gttctgatgc agatatcaaa
     5641 aagaccatgg cttcactttc tttagctaaa ctggagaact atcgctacca aactttgctt
     5701 actgccattg aaaaagagtc cttgccggtg attgatttat ctagaaccga atttaaagat
     5761 tcatcggaag aagatcgact acgtattaaa cacttaattg aggagcaata caccacttgg
     5821 caaaaacaaa aaacacagaa aactttagcg tataagcgta aagaggctga aaaacaaaca
     5881 atatttgcct atgtccgtaa atatgaaggt gcaacacgta ttgaacaaga aaaattaaaa
     5941 gactttaagg cactttataa acagaagtct ttatctaagc acgaacttct tgcgcaagaa
     6001 aataaattaa ttgaggctca gaatgagcta gctgtttatc gctcaaaatt aaatgaatta
     6061 gaaaatgatc tactcaatgt aaaagaagaa cttgaattga tcacgcaatt ctttaaaagc
     6121 gatgtgttgg aaaaattaaa gcaacatatt gaaaatgaac gccaacttcg gctcgagtta
     6181 gaaaaaaata atcaacgcag acaggcctcg atgatcagag caccggtttc cggtacggtt
     6241 cagcaactga aaattcacac tataggtggt gttgttacga ctgctgaaac cttgatgatc
     6301 attgtgccgg aagacgatgt gttagaggcc accgctctgg ttccaaacaa agatatcggc
     6361 tttgttgcag cagggcagga ggtgattatt aaagtggaaa ctttccctta tacacgctat
     6421 ggttatctaa ctggtcgaat taaacatatt agcccggatg cgattgaaca acctaatgta
     6481 ggcttagttt ttaatgcaac tatagctata gataggaaga atctaacatc gcctgatggg
     6541 cgaaaaattg atttgagttc aggtatgaca ataactgctg aaatcaaaac cggtgaacgg
     6601 agtgtaatga gttatttact cagcccatta gaagaatctg tcacagaaag tttaagggaa
     6661 cgctaatcga accaaaacaa agccataaaa gccattttga gcttttatgg ctttattttt
     6721 tagtccacaa gcggtca
//
LOCUS       DANLVT010000123         6641 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.123, whole genome shotgun sequence.
ACCESSION   DANLVT010000123 DANLVT010000000
VERSION     DANLVT010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6641)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6641)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6641
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.123"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..1995
                     /locus_tag="PXC99_002142"
     CDS             <1..1995
                     /locus_tag="PXC99_002142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5418558.1"
                     /translation="EIEQTRAAYDRLKRSGVASQNELRRASEATKQRVRELNAELGKT
                     SFGDKAGSFGRGLMGAGVGIAAGAAMARQPARNQMEFDRQLAMVANTAFSDRDVKGRI
                     DGKRELLDAVQKAVSVGGGSKEEALSSLDALLASGAVSTETALNLLPTLQKGAVATGA
                     SANDMAQIAISSMQQFGIKEEDIGRVLDMAVAAGQAGSFELADMASWLPQQMAAAKQA
                     GLSGIEGFERLLIANQQARVTAGTSNEAGNNLVNLLGKITAKETNERFKNIEYKDPKT
                     GKTKAIDFAKSMEHYKGKGQDSLQAFMSIMDDVVGSDKRYQELQAKLKTAKGEEQKRL
                     FNELTNLVEGTAIGEIISDRQALMALLGIKNNVQLGEKVQKDIQNSEGAVETSHAVIR
                     DTNAHKVESLKNTTEFAQMKNFEKVNGVLGTLAELLNKYANEYPNLTQFLSGATDAVK
                     IFGAALAASSVLDLLTGKKDKGGLIGDVLDKSSKASGGKGKVGKLLSVGGSFASVAGV
                     ATMLHGDQAPMSEERKAELRDPNYQARKMYEYKKEILGSRFHSFFRSNETLEQYRKDV
                     SAYEAKQKNSNTMGAVQGVLSTIPSLQELRPKVDSVTQTLSTYQADFQAFGATISAGI
                     EAGLASQSHTIANQITVELDGSVVAEKVAEYQFNFNKRMA"
     gene            1995..3287
                     /locus_tag="PXC99_002143"
     CDS             1995..3287
                     /locus_tag="PXC99_002143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA circularization protein"
                     /protein_id="HDL5418559.1"
                     /translation="MSGWTMPIQQASFKGVRFDVLAVDDSFERAVVEHAYPFVNGADL
                     EDMGLNTQTIRLQAVFFGSSYYTDYIRLLSVLQQKGADVLVHPIRGRLPNMLLVSANL
                     HTDAENINYVALDLTFKEATEMQPIFAFEDSLISKIDKLLLDLENLFDDGLRFWDSVG
                     VFDLKSRLLGLWGALFASFEAVRNLFDLDKKKYSIASSTSQRTYLRDGSGALNQLKEM
                     VDSGIQGRADLTTLSFKSQLLNITDAIDNTQAIVSKVARDEGFNRSKTVKLLGSDVVE
                     LGIMLDLIATTKLTKVLTELVEEREEELLIGDLELINQIVREHWLNIINKLREQQKNT
                     QKGVPSDKTKVIYETAEKLINNIRNVAHQFTALVLAVINKKPPLTVRMVMDSGTIHKV
                     AHAFYGDYERADELLRLNPHIRQPNFIERGTLLNCYWE"
     gene            3290..4417
                     /locus_tag="PXC99_002144"
     CDS             3290..4417
                     /locus_tag="PXC99_002144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5418560.1"
                     /translation="MENEIVVEIDGSQHKNWKSYDIDSDFLIPADSFNFELGKSSNIE
                     VLPNYSGKTAIVKINGKTVLTGIVDTTHHTISKSGRGFSLNGRDKAAILVDCSAPITN
                     VQGLSLLDAVKKIVTPLGIKEVQLKAEKNPTLSKVDIDVGESAWEAIMRCANSAGLHC
                     WFDPKGVLIVGGADYAQPPVATLYCVKESGDSRKNNFVDATLSYDVSQSYSEVTFLAQ
                     KHGKDSDNAKHDFKWVYKNEEMELYKPKTIVLGDVENLEALMKQAKKQVSDWQLESFN
                     LTIIVPDHKTKDGTLWQAGQRVHVVCEEYDLDGIFFLMGRRFRLSRTGGTTTELRLKL
                     DGVWTPDAYQAKAQEARKRKGKKGRKKKEPVEYVGSWELGK"
     gene            4419..5081
                     /locus_tag="PXC99_002145"
     CDS             4419..5081
                     /locus_tag="PXC99_002145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL5418561.1"
                     /translation="MMRKLAKQTKEVAKGVQDSVRAAFRGVLNLVKSGSDIQQVQVSA
                     LADETIQDLELMQHFGFTSVPPAGTQAVVIPLGGKTTHGIIVATENGSFRVKNLKNGE
                     TAIYDSSGSTIILKNGRVIDIECDSFNIKCKQYSVTASGGANFNTPKLETDQQFVSQG
                     QISGNGGMVVQGGSGASFTGSLTQQGGSISTDGDVVASGKSLVTHQHNEQGDGRPTSA
                     PI"
     gene            5200..5550
                     /locus_tag="PXC99_002146"
     CDS             5200..5550
                     /locus_tag="PXC99_002146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage GP46 family protein"
                     /protein_id="HDL5418562.1"
                     /translation="MDREISPLTRDYTSENITTLQNAVYIRLTTPKGSWWADGRVGSL
                     LHLIQREKDLSRVGLLAQQYAEEALQPIIDDGRAKSITVTHEQPKDGSLNLLISVIDN
                     RGVKFEFKHPVKLV"
     gene            5563..6624
                     /locus_tag="PXC99_002147"
     CDS             5563..6624
                     /locus_tag="PXC99_002147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HDL5418563.1"
                     /translation="MYQIPTLEDVRREILRDIQSLEPTADIEVDSDYFVRASALASCV
                     VGLYAHQNWIVRQYFPDTADSEYLEMHAKLRNLYRKNATYASGSLKVFGTAGSVINEG
                     LQVKFGERFYVTKSSDVIGDDGSATVRVISMATGASSNVKSESKAQLTAAPAGVSSDC
                     LLLPDVTGGTEVESDAALLARLLEQIRRPPSGGNKNDFRQWAESVDGVTSAFVYPLRR
                     GEGTVDIAITSGDTVPSDEIVRATQAYIDEVRPVTAKSVYVLKPVEKRVNFNIKVQLD
                     TDTTLDGVKAEIENALENYFLSLKPADTLIISQIEAVISDLVGVVDREIVQPTRNQTI
                     DAYREMGWFRLGDVTVELM"
BASE COUNT         1955 a         1228 c         1680 g         1778 t
ORIGIN      
        1 gaaattgaac aaactcgtgc agcctatgac cgcttaaaac gctcaggtgt tgcctcgcaa
       61 aatgagctac gccgtgcctc agaagcgact aagcaacgag tccgagagtt aaatgctgaa
      121 ttgggtaaaa ccagttttgg ggataaggca ggaagttttg ggcgtgggtt gatgggtgca
      181 ggggttggaa ttgctgcagg tgcagcaatg gctcgccagc ctgcaagaaa tcaaatggaa
      241 tttgatagac agcttgcaat ggtagcgaat accgcctttt cagatcgtga tgtgaaaggg
      301 cgtattgatg ggaaaagaga gttacttgat gccgtacaga aagcagtaag tgtaggcggt
      361 ggctcaaaag aagaagcgtt gagctcacta gacgctttac ttgcctcagg tgctgtttct
      421 accgaaaccg ctctcaattt actcccaacg ttgcagaaag gtgcggtcgc aacaggggca
      481 agtgcaaatg atatggctca aattgctatt tcctcaatgc aacaatttgg gattaaagaa
      541 gaggatattg gtcgagtctt agatatggca gttgccgctg ggcaagccgg tagctttgag
      601 cttgcagata tggcaagttg gttgcctcaa caaatggccg ctgcaaaaca agctggctta
      661 agcggcattg agggatttga gcgactttta attgcaaacc aacaggctcg tgtcactgcc
      721 ggtacaagta acgaggctgg taataattta gtgaatctgt tgggtaagat tactgctaaa
      781 gaaactaatg agcgttttaa gaatattgaa tataaagatc cgaaaactgg caaaaccaaa
      841 gcgattgatt ttgcaaaatc tatggagcat tacaagggaa aagggcaaga ttcattgcag
      901 gcttttatgt ctattatgga tgacgttgtc gggagtgata aacgctatca agaactacaa
      961 gctaaactta aaactgctaa aggcgaagag cagaaacgct tattcaatga attaacaaac
     1021 ttagttgaag gtacggcaat tggagaaatt atttctgatc gccaagcatt aatggctcta
     1081 ttagggataa agaataatgt tcaattaggt gaaaaagtac agaaagatat tcagaatagt
     1141 gaaggagctg ttgaaacctc tcacgctgtt attcgggata ctaatgctca taaagttgaa
     1201 tcattaaaaa atacaactga atttgcacaa atgaaaaact ttgaaaaagt aaatggagtg
     1261 ttaggcacat tagctgaatt actgaataaa tacgccaatg aataccctaa cttaactcaa
     1321 tttttaagtg gtgcaacaga tgccgttaaa atttttggag cagctcttgc tgcatcaagt
     1381 gtgcttgatt tattaaccgg taaaaaagac aagggcggac taattggtga tgttttggat
     1441 aaatcatcaa aagctagtgg aggtaaaggt aaggtaggta aattgctttc ggttggtggc
     1501 tcttttgcta gtgttgcagg cgttgccaca atgctacacg gcgaccaagc cccgatgagt
     1561 gaggagcgaa aagcagagtt aagagatcct aattatcaag ctcgtaaaat gtacgagtac
     1621 aaaaaagaga ttttaggtag ccgtttccac tcgttttttc gtagtaatga aacccttgag
     1681 caatatcgga aagatgtgag tgcttatgag gctaagcaaa agaatagcaa tactatggga
     1741 gctgtacaag gggttttaag taccattccg agcttacaag agttacgccc taaagttgat
     1801 tcggttactc aaaccctatc cacctatcaa gccgactttc aggcttttgg ggcaacgatt
     1861 tcagccggta ttgaggcagg gcttgcctcg caatctcata cgattgcaaa tcaaatcacc
     1921 gtggagctgg acggttcggt ggtggctgaa aaagtggctg aatatcagtt taattttaac
     1981 aagaggatgg cgtaatgagc ggttggacaa tgcctattca acaggcgagt tttaaaggtg
     2041 tgcgttttga cgtgcttgca gtggatgata gctttgagcg agcggtagtt gaacacgcct
     2101 acccttttgt aaatggggct gatttagagg atatggggct aaacacccaa actattcggc
     2161 tgcaagcggt cttttttggc tcaagctatt acacggacta tatccgctta ctttcagttt
     2221 tgcagcaaaa aggggctgat gtattagtcc accctattcg tgggcgttta ccgaatatgt
     2281 tactcgtttc ggcgaatcta cataccgatg ccgaaaatat caattatgtt gccttagatt
     2341 tgacctttaa agaggcaacc gaaatgcagc cgatttttgc ctttgaagat tcgctgattt
     2401 cgaaaatcga caagctgcta cttgatctcg aaaacctgtt tgatgatggc ttgcgttttt
     2461 gggatagcgt tggggtgttt gatctgaaat ctcgtttgct tgggctttgg ggggcgttgt
     2521 ttgcctcgtt tgaggcggtg cgtaacctgt ttgacttgga caagaaaaaa tacagcattg
     2581 cctcatcaac ctcacaacgc acctatttaa gagacggttc gggggcattg aatcagttaa
     2641 aagaaatggt ggatagcggt attcaggggc gtgctgattt aacgacactc tcgtttaaat
     2701 ctcagttact caatattact gatgcgatag ataacactca ggcgattgtg agcaaagtgg
     2761 ctagagatga gggttttaac cgctcaaaaa cggttaagtt acttggctct gatgtggttg
     2821 agcttggcat tatgcttgac cttattgcca cgactaagct caccaaagtc ttgactgagc
     2881 tggtagaaga gcgtgaggaa gagctgctaa ttggtgattt agagttaatt aaccaaattg
     2941 tgcgtgagca ttggctgaat attatcaaca aactgcgtga gcaacagaag aacactcaaa
     3001 aaggcgtgcc gagtgataag acaaaagtta tctacgagac cgcagaaaag ctgatcaaca
     3061 atatccgtaa tgttgcccat cagtttactg cacttgtgct tgcggtaatt aataaaaaac
     3121 cgcctttgac cgtgcgaatg gtaatggata gcggcacaat ccataaagta gctcacgcct
     3181 tttatgggga ttatgagcga gcggatgagc tattacgtct taatccgcat attcgccagc
     3241 caaactttat tgagcgaggc acgctgttaa attgttattg ggagtaaaaa tggaaaatga
     3301 aattgtggtg gagattgacg gctcgcagca taaaaactgg aaaagttatg atattgacag
     3361 cgatttttta attcctgctg atagttttaa ttttgagttg ggtaaatcta gcaatataga
     3421 ggttttacct aattattcgg gcaaaacggc aatagttaaa atcaatggca aaacggtgct
     3481 cactggcatt gtggatacca cacatcacac cattagcaaa agcgggcgtg ggtttagcct
     3541 aaatggacgt gataaagccg ctattttggt ggattgctct gccccgatta ccaatgtgca
     3601 agggctctct ttgcttgatg ctgttaaaaa aattgtaacc cctcttggga ttaaagaggt
     3661 gcaactgaaa gccgagaaaa acccgacttt aagcaaggtg gatattgatg tgggtgaatc
     3721 ggcgtgggag gcgattatgc ggtgtgccaa ctcggcaggt ttgcattgtt ggtttgaccc
     3781 caaaggcgtg ttaattgtcg gcggtgcgga ttacgctcaa ccgcccgttg ccacgttata
     3841 ttgcgtgaaa gagtcggggg atagccgtaa aaataacttt gttgatgcaa cactttctta
     3901 tgatgtgtcg caaagctatt cggaggtcac ttttcttgct caaaaacacg gcaaagattc
     3961 tgataatgcc aagcacgatt ttaaatgggt gtataaaaat gaggaaatgg agctttataa
     4021 accgaaaact atcgtgctgg gcgatgtgga gaacctcgaa gccttgatga aacaggcgaa
     4081 aaaacaggta tcagattggc agttggagtc atttaacctc acgattattg tacctgacca
     4141 taaaaccaaa gacggcacgt tgtggcaagc tgggcaacgt gtgcacgtgg tatgtgagga
     4201 gtatgattta gatggtattt tctttttaat ggggcgacgt tttcgactct ctcgcacggg
     4261 tggcacaacc accgaattgc ggttaaaact ggatggcgtg tggacacctg atgcttatca
     4321 agctaaagca caagaggctc gcaagcgtaa aggcaaaaaa ggacgtaaga aaaaagagcc
     4381 tgtagaatat gtaggctcgt gggagttggg aaaataatat gatgagaaaa ttagcaaaac
     4441 agactaaaga ggtggcaaaa ggtgtgcaag atagcgtgcg tgctgctttt agaggggtat
     4501 taaatttagt caagagtggc agtgatattc agcaggtaca ggtgtccgct ttagcggacg
     4561 aaactatcca agatttagag ctaatgcagc attttggttt cacttccgtg ccacctgccg
     4621 gcacgcaagc ggttgttatc cccttaggtg gtaaaaccac gcacggtatt attgtggcga
     4681 ctgaaaacgg ctcgtttagg gttaaaaatc taaaaaatgg tgagacggct atttatgatt
     4741 caagcggctc aactatcata ttaaaaaacg ggcgagtgat tgatattgag tgcgatagct
     4801 ttaacattaa atgcaagcaa tattccgtca ccgcaagcgg tggagcaaat tttaacaccc
     4861 cgaaactaga aaccgaccag cagtttgtgt ctcaagggca gatcagcggc aacggtggaa
     4921 tggtagttca aggcggaagt ggtgcaagtt tcactggctc attaacacaa caaggaggca
     4981 gtatctcaac tgatggtgat gtggtggcat cgggtaaatc actggttaca catcaacaca
     5041 acgaacaagg cgatggcaga cctacctctg ctccaattta acttacaagc taatttacaa
     5101 gcggtctaat tttgcaaatt ttttgtagaa aaagaccgct tgccatttgt ggaagtctct
     5161 ccccgttact cctgtcttta atgtctctac catagcaata tggacagaga aatcagcccg
     5221 ctcactcggg actatacaag tgaaaatata actacactgc aaaatgccgt gtatatcaga
     5281 ctaactactc cgaaaggctc gtggtgggca gatgggcgtg taggttctct gctccatctt
     5341 attcaacgtg agaaagattt aagccgtgtg gggctattag ctcaacagta cgccgaagag
     5401 gctttgcagc cgattattga tgacggacga gccaaaagca ttacggtgac acacgagcag
     5461 ccaaaagacg gctcgttaaa tcttttaatc tccgttattg ataatcgtgg ggttaaattt
     5521 gagtttaaac accctgtaaa actggtttag gtggttttta aaatgtatca aatcccaacg
     5581 cttgaagatg ttagaagaga aattctgcga gatattcaat ctttagagcc aactgctgat
     5641 attgaggtgg attcggatta ttttgttcgt gcctccgctt tggcaagctg tgtggtgggg
     5701 ctgtatgctc accaaaactg gattgttcgt cagtatttcc cagatacggc agactccgaa
     5761 tacctcgaaa tgcacgctaa attgcgaaat ctttaccgta aaaatgcgac ctatgcgagt
     5821 ggttcgttga aagtttttgg tactgctggc tcagtaatca atgagggctt gcaagttaaa
     5881 tttggcgagc gtttttatgt aaccaaaagc tcggacgtta ttggtgatga tggctctgca
     5941 acggtgcgag tgatttcaat ggcaacaggg gcatcaagca atgttaaatc tgaaagtaaa
     6001 gcacaactga ctgctgctcc tgctggcgta tcaagcgatt gcttgttatt gcctgatgtg
     6061 acaggcggga cggaagtgga aagcgatgcg gcattgctgg ctcggttatt agagcagatt
     6121 cgccgaccac cgtcaggcgg gaataaaaat gacttccgcc aatgggcaga aagcgttgat
     6181 ggcgtaacct ctgcgtttgt ttatccatta cggcgtggcg agggtacggt agatattgca
     6241 atcacctcag gtgataccgt gccaagtgat gaaatcgtgc gagcaactca agcttatatt
     6301 gatgaagtcc gccctgttac ggctaaatcg gtttatgtac ttaagccagt tgaaaaacgg
     6361 gtcaatttta acatcaaagt gcaacttgat acggatacga cgcttgatgg tgtaaaagcg
     6421 gaaatcgaaa acgctttaga gaattatttt ttatcactca aacctgctga caccttaatt
     6481 atttcgcaaa ttgaggcagt aattagtgat ttagtgggcg tagtagatcg tgagattgta
     6541 cagccaacca gaaaccaaac gattgatgcc taccgtgaaa tgggctggtt cagattgggt
     6601 gatgtaactg tggagttgat gtgatggtaa cgattaactc t
//
LOCUS       DANLVT010000124         6630 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.124, whole genome shotgun sequence.
ACCESSION   DANLVT010000124 DANLVT010000000
VERSION     DANLVT010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6630)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6630)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6630
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.124"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(71..1762)
                     /gene="dld"
                     /locus_tag="PXC99_002148"
     CDS             complement(71..1762)
                     /gene="dld"
                     /locus_tag="PXC99_002148"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HDL5418564.1"
                     /translation="MSNNSLISQLTEIVGQSYIITDPTKTEAYRSGYRFGTGSAIAVV
                     KPTTLLEYWNVLKACVAADVIVISQAANTGLTGGSTPSGNDYDRDIVIINTMRMNGIQ
                     LINNANQVVCLPGSTLNELELLLKTHGREPHSVIGSSCIGASVIGGICNNSGGALVQR
                     GPAYTEMALFAQLNEDGTLELKNHLGIDLGDTPEEILENLQAQRYQRKDIQQACGKGH
                     DHAYCNHVRQIDEDSPARFNADPARHYEAAGSAGKLAVFAVRLDTFPLEKDTAVFYIG
                     TNHTDTLNDIRRYMLANFEVLPISGEYIHRDAFDIAADYGKDTFWVIKKLGTHRLPQL
                     FSLKAKVDRMAKKLTFLPANLSDKILQAISKMLPQHLPESLRDYRNQYEHHLIIKMGG
                     KGVQEARDYLARYFADTQKGGYLECNPTESQAAMLHRFAVASAAIRYRAIHDKEVEDI
                     VALDIALRRNDKAWFEVLPPEIESQITHKLYYGHFMCHVFHQDYIVKKGVDCLALEHQ
                     MLELLDKRGAQYPAEHNVGHLYEAKPTLRKFYRQLDPTNSFNPGIGQTSKKKYWK"
     gene            complement(1974..3071)
                     /locus_tag="PXC99_002149"
     CDS             complement(1974..3071)
                     /locus_tag="PXC99_002149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS481 family transposase"
                     /protein_id="HDL5418565.1"
                     /translation="MFYSSNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQ
                     AVEQGGVEALLNQNRRVPNIKNRVDESTEKAVVQFALDNPAFGQVRVSNELRKQGIFV
                     SAGGFCLCRWFLSLQVVFVSAGGVRSIWLRHHLANFKQRLTALEKLVAEQGIILSEPQ
                     IQALERKKEDEIACGEIETAHPGYLGSQDTFYVGNIKGVGRIYQQTFIDTYSKVAFAK
                     LYTMKTAITAADMLNDKVLPFFESQRLPMLRVLTDRGSEYCGKVENHDYELYLAINDI
                     EHTKTKVKQPQTNGICERFHKTILQEFYQVAFRKRIYMDLEALQADLDEWLMYYNHHR
                     THQGKMCCGRTPMETLVDGKRIWAEKNLSSN"
     gene            3401..4117
                     /locus_tag="PXC99_002150"
     CDS             3401..4117
                     /locus_tag="PXC99_002150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="HDL5418566.1"
                     /translation="MYLMYVDESGSTTDPTQKYFVLSGIAVFERNTHWIEKKMNVIAS
                     QFCQYSEGSDPYFYELHGSPMRSGKSEWRGIPMSERINAIQDCLKLVQSNNIRIFAAV
                     IEQGYSSGQDTITECFEQISSRFDMYLSRLHAQGNTQRGISIFDKSSTEKSIQALART
                     FKNSGHTYGKLRNFSEVPLFLDSKSSRLIQLADLVSYAIFRHYEHNDSSFYDIIRNNF
                     DYHNGRIHGLYLRNKEDIIS"
     gene            complement(4160..5078)
                     /locus_tag="PXC99_002151"
                     /pseudo
     CDS             complement(4160..5078)
                     /locus_tag="PXC99_002151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005700778.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
     gene            complement(5080..>6630)
                     /locus_tag="PXC99_002152"
     CDS             complement(5080..>6630)
                     /locus_tag="PXC99_002152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase/relaxase domain-containing protein"
                     /protein_id="HDL5418567.1"
                     /translation="VHDIGKVVVDIEITLKDGSRWFAWNGLPPQPYKFKYIKGRDYHL
                     HPVLGGFLANQLIPKSAFDWLGQYPEVISSLMYAMSGHNDKAGLLSEIVQKADQHSVT
                     LALGGDVNKLVQRPVNSLSKQLVLALRYLLEQKIKLNTPKGPADGWFTEEGLWLVSKT
                     AADNIRAYLLGQGISVPKDNPKLFDEMQSLGIVEESPAGGAIWSCRIQADSGWTPANT
                     FTLLRIKPEVAWENINDRPNYFAGKVKIVEQITEESNIETQSTLVDGTTKPAPLPSVQ
                     TGGIIASKEVEISQVETNSDNAPSSEIIINDENDLTSFVLDMFAPTESSEPSLDDISI
                     GKGQEIASMPSKQEVQDKSTTKKLKVTQSAVETPETLTLSELQLQNKENSITGDNFVK
                     WLKSGIATNKFAINKPTAKLHIVEDHLFLVTPVIFEMYLQETGQPYDKETINNLQYDF
                     QGLGIHSPKNTMTNGKPDTINFWKCDVIGPRKTSSLTGYLIKNTRLFFGDKVLLNNHC
                     LTLQKEET"
BASE COUNT         1910 a         1346 c         1246 g         2128 t
ORIGIN      
        1 agcaactgtt ttgtccactt ggcatagttt ttgacggatc agcaactatt ttgtctacta
       61 tgcctttttg ttacttccag tattttttct tcgaggtttg cccgatcccc ggattaaagc
      121 tgttggttgg atcaagctgc cggtagaatt tgcgtaaggt cggttttgct tcgtaaagat
      181 gaccgacatt atgctccgca gggtattgtg ccccacgttt atccagtaat tctaacatct
      241 gatgttccaa cgccaaacaa tctacacctt ttttcacaat atagtcttga tggaaaacat
      301 ggcacataaa atgcccataa taaagtttgt gcgtgatttg actctctatt tccggcggta
      361 gcacttcaaa ccacgcttta tcatttcggc gaagggcaat atctaaagca acaatatctt
      421 ccacctcttt atcgtgaatg gctcgatagc gaatcgctgc cgaagcaacg gcaaaacgat
      481 gtaacattgc cgcttggctt tcagtcggat tacactccaa ataaccgcct ttttgtgtat
      541 cagcaaaata acgggcaaga tagtctcttg cttcttgaac gccttttcca cccattttga
      601 taattaagtg atgttcatac tggttacggt agtctcgaag actttccggc aaatgttgcg
      661 gtaacatttt tgagattgcc tgtaatattt tatcactgag atttgccggt aaaaaggtga
      721 gtttcttcgc cattctgtcc acttttgctt taagtgaaaa gagttgtggt aagcggtgtg
      781 taccgagttt tttaatcacc caaaaagtat ctttaccgta atcagcggca atatcaaagg
      841 catcacgatg aatatattca ccggaaatcg gcaatacctc aaagttggct aacatatagc
      901 gacgaatatc gtttaatgtg tccgtatgat ttgtcccgat ataaaaaaca gccgtgtctt
      961 tttcaagcgg aaaggtatct aatcgcaccg caaacaccgc taactttcct gcactaccgg
     1021 cagcctcgta gtggcgggca ggatcggcat taaaacgggc aggggagtct tcatcaattt
     1081 ggcggacgtg attacaatag gcgtgatcgt gtccttttcc gcacgcttgc tgaatatcct
     1141 tacgctgata acgttgggct tgcagatttt ctaaaatttc ttccggcgta tcacctaaat
     1201 caatacctaa atggtttttt aattccagcg tgccgtcttc atttaactgg gcaaacagtg
     1261 ccatttcagt ataagccggc ccacgttgca ctaatgcacc ccctgaatta ttacaaatac
     1321 caccgataac cgaagccccg atacaggacg atccgatcac cgaatgcggt tcacgtccgt
     1381 gcgttttcag caacaattcc agctcattta atgtcgagcc cggtaagcaa acgacttgat
     1441 tggcattgtt aattaactga atgccgttca ttcgcattgt gttaatgatc acaatatccc
     1501 gatcataatc gttgccgctt ggtgttgaac caccggttaa tccggtattg gccgcttgtg
     1561 agataacaat gacatcggcg gcgacacagg cttttaatac gttccagtat tctaataacg
     1621 ttgtaggttt taccactgca atcgcactac ccgtgccaaa gcgatacccg ctacgatagg
     1681 cttccgtctt agtcgggtca gtgatgatat aagactgccc gacaatttca gtaagctgag
     1741 aaatcagtga attatttgac attatgcttc cctcaaaggt agaaatagat agggcagtat
     1801 agcaataaac aaaagagagc aaagcagaat gttacaaaat tgtgaactac tgcacagaat
     1861 aaatgaagaa atgaagtaaa agaaagcgag ctaaaagagc gtcgcccgct ttatttgtag
     1921 aaaatcaaac ctaatctgac agtcccccgt ttaaaattac cgtgtctgtc agattaattt
     1981 gagcttaaat tcttttctgc ccaaatgcgt tttccatcaa ctaatgtctc catcggtgtt
     2041 cttccacagc acatttttcc ttgatgggtt cgatgatggt tataatacat taaccattca
     2101 tctaagtcag cttgcaatgc ctctaaatcc atataaatcc gttttctgaa tgccacttgg
     2161 tagaactcct gcaaaatcgt tttgtgaaaa cgctcacaga tgccgtttgt ttgtggctgt
     2221 ttcactttgg tttttgtgtg ctctatgtca ttgatagcca aataaagctc ataatcgtga
     2281 ttctcaactt tcccacaata ctcactgcct cggtctgtca gcactcgtaa cataggtaac
     2341 ctctggcttt caaagaatgg taatactttg tcatttagca tatcagcagc agtgatagcc
     2401 gtcttcattg tatacagttt tgcaaatgcc actttactat aagtatcaat aaacgtttgc
     2461 tgataaatac gacccacacc tttaatattg ccgacataaa aggtatcttg tgaccctaaa
     2521 tagccggggt gtgccgtttc aatttcacca caggcaatct catcttcttt cttccgctcc
     2581 aaggcttgta tctgtggctc actcagaata atgccttgct ctgccaccaa tttttcgagg
     2641 gcagttaagc gttgcttaaa attagctaag tgatgtctca accaaatgga acgtacacca
     2701 cctgcagaga caaaaaccac ctgcagagac aaaaaccacc tgcagagaca aaaaccacct
     2761 gcagagacaa aaatcccctg tttacgcagt tcattactca ctcgaacttg accaaaagca
     2821 ggattatcta aagcgaattg tacaaccgct ttttctgtgg attcatccac acgattttta
     2881 atgttgggaa cacgtcgatt ttgatttagt aatgcctcaa caccgccttg ttcgacagcc
     2941 tgttgatagc gataaaaagt atctcgactc atccccatta ccttacaggc ttgtgagata
     3001 ttacccagtt cttctgctaa atttaataaa ccggtcttgt gtttaataag tggattgcta
     3061 gaataaaaca tgagagtttc ctttttgttt agattgattt ttgacactca tattctaaac
     3121 gggaaactct cactttttag agtgaattgt cagatcaagt ctgatcttct acagacgatc
     3181 caggtcttac acattctttc aagtttgtaa agcctgaaaa ttatttttta tacttgattt
     3241 ttgtcaaaaa gtctctacac tatatggcag ggtcagtttt cgctgtttaa cggtgtttaa
     3301 tgagattttc attactggct ctccttaata gaaatttatg gaagagctat ctgatagagt
     3361 aatctagcga tagctctttt tcattgaaca aagaggctat atgtatctta tgtatgttga
     3421 tgagtctggt tctacgacag atcctactca aaaatatttt gtattatcag gtatcgctgt
     3481 atttgaacga aatactcatt ggattgagaa aaaaatgaat gtgatagcct ctcaattctg
     3541 tcaatattct gaagggagtg atccatattt ctatgagtta catggttcac caatgagatc
     3601 tggaaagagt gaatggagag gcattccaat gagtgagcgt attaatgcca ttcaagattg
     3661 cttgaaatta gttcaaagta ataatattcg tatatttgca gcagttatag agcaagggta
     3721 ttctagtggt caggatacta ttacagaatg ttttgagcaa atatcatctc gatttgatat
     3781 gtatctgagc cgtttacatg cccaaggtaa tacccaaaga ggcatttcta tctttgataa
     3841 atcatcgact gagaagtcaa tccaagcact tgcaagaaca ttcaaaaata gtgggcatac
     3901 ttatgggaaa cttagaaatt tctcagaagt tccattattt cttgactcaa agtcatcgag
     3961 attaattcag ctagcggatc tagtttccta tgcgatattt agacactatg aacacaatga
     4021 tagctcattt tacgatatta taagaaataa ctttgattat cataacgggc gtattcatgg
     4081 tttatattta cggaacaaag aagatattat ttcataaaaa ttcgccccaa aagggagaag
     4141 tatctccctt ttgtattttt tataacaaat taaccgtttc tctcaacatt tccacatcgt
     4201 gttcaatata tcctagtgtc acactgatat ctttatgccc taacagtttc tgaaccacat
     4261 aaacattttc gggcttcttc attaattgag tagcaactgt atgtcgaaat ctgtgtggtg
     4321 atgaagtaaa accgaccaag tcagaaatat gccgaaatat atgtgtaagc tgattttggc
     4381 tcatcggctg tcctcttctt cgagagcatc gagaaaataa attgagattg aacaattggc
     4441 aattatctgt ttgttttctt atttttaatt cagtaataag cctttctata tgaatataaa
     4501 gtgaatctga aatcggtacg atatggtaat catgattttt attgatttcc ggcgaaatat
     4561 aaatcgtcct attagaaaga tctacatcac taattttcag tttcactaat tgtcctcgcc
     4621 gaatccccgt acatctcaat gtcataataa ttgcaaggac aaaccagctt ggttttagaa
     4681 agtcaggtaa tacaacgtta ttattgagta tgtggtctat tttatgtaat tgttcggttg
     4741 aataagtttt ctttctcctt ttcgattctc gaataaataa ctgattaaat ggatttcgat
     4801 ttatattaag taatccttgc gatataccaa agttatataa ggcttttaaa tgtctgacat
     4861 aattattcca cgttactgct ttgattttat cgccaacaat ttgattacgc cattcaatga
     4921 gcatatcggt ggtaatgtca ttggcattta actttggata acgctttttg ataattcgga
     4981 ttacgttgtt gtagctccgt ttggtatccg gacgaagata gtgacgatag aaaaaaaaat
     5041 cggtctagta gcgaatcaaa agagatagaa gttatcattt taagtttcct ctttctgtaa
     5101 agttaaacag tgattattta atagtacctt atccccaaaa aagagacggg tattttttat
     5161 caaatatcct gttaaagagg aagtctttct cggtccaatg acatcacatt tccaaaaatt
     5221 gatggtatcc ggcttaccgt tggtcattgt gtttttaggt gaatgaatcc ctaatccttg
     5281 aaaatcatac tggagattat taattgtttc cttatcataa ggctgtccag tctcttgcaa
     5341 atacatttca aaaataacgg gggtaactaa aaacaggtgg tcttcaacaa tatggagctt
     5401 ggcagtaggc ttgttaattg caaatttgtt ggtcgcaata cctgatttga gccactttac
     5461 aaagttatct cctgtaattg agttctcctt attctgtaac tgtagctctg atagtgttaa
     5521 tgtttcgggc gtttctactg cactttgtgt tactttgagc tttttagtgg tagatttatc
     5581 ctgtacttct tgtttggatg gcatacttgc aatttcctgt cccttaccaa ttgaaatatc
     5641 atcaaggctt ggttcggaac tttccgtagg tgcaaacata tccagcacaa aggaggttaa
     5701 atcattttca tcatttatga tgatttctga ggatggtgca ttatccgagt ttgtctctac
     5761 ctgagatatt tcaacttctt tagaggcaat aatgccccct gtctgaacac tcggtaatgg
     5821 agctggttta gtggtcccat cgactaatgt agactgagtc tctatattac tttcttctgt
     5881 tatctgctcg actattttaa cttttccggc aaaataattt ggtcgatcat taatattctc
     5941 ccaagccact tctggtttaa ttctcaataa tgtaaaggta tttgctggcg tccaacctga
     6001 atcagcttga atacggcaac tccaaattgc tccaccagcc ggtgattctt ctacaatacc
     6061 gagagactgc atttcatcaa ataactttgg attatcctta ggcactgaaa ttccctgccc
     6121 cagtaagtaa gctcggatat tatcagcagc agttttgcta acaagccaca atccttcctc
     6181 agtgaaccaa ccgtctgccg gacctttggg tgtatttaac tttattttct gttccagcaa
     6241 ataacgtagt gccaagacca gttgctttga cagagaattg acaggacgtt gaaccagttt
     6301 atttacatcg ccaccgagtg cgagggtaac actatgctga tcggctttct gcacgatctc
     6361 agataaaagc ccggctttat cgttatgccc agacattgca tacatcagtg aagaaatgac
     6421 ttctggatac tgtcccagcc aatcaaacgc agattttgga ataagttgat ttgcaaggaa
     6481 gcctcctagc accggatgaa gatggtagtc tcgacctttg atgtatttga atttataagg
     6541 ttgaggtggt aacccattcc aagcaaacca acgtgaaccg tctttgagtg taatttcaat
     6601 atcaacgaca actttgccaa tatcgtgaac
//
LOCUS       DANLVT010000125         6478 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.125, whole genome shotgun sequence.
ACCESSION   DANLVT010000125 DANLVT010000000
VERSION     DANLVT010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6478
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.125"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            238..323
                     /locus_tag="PXC99_002153"
     tRNA            238..323
                     /locus_tag="PXC99_002153"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:272..274,aa:Leu,seq:caa)
     gene            417..1241
                     /locus_tag="PXC99_002154"
     CDS             417..1241
                     /locus_tag="PXC99_002154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HDL5418568.1"
                     /translation="MKPLQNGTNKPFTITIASTKGGSAKSTNAANIGAFCAEHGLRTL
                     LIDTDTQPTLSSYYELEYQAPGGTYEFLHFKDVDPTHIISRTAIPNLDLIQSNDPSNK
                     ISPMLRDSPDGALRFSLLLQKIEGYDVIIIDTRGTRDITVDMSVLAADVLFCPILPHI
                     LSAKEFIRGTIGMYQDLETFTAFGFTLPPLKAMINCVDHTKDVKLVSDYLHTLFQNEF
                     DENKTLLEFSVPDRVAYREAATFSKPVYRQSQAEYETIRQLCALLMPQFAQSHFSE"
     gene            1253..2617
                     /gene="dnaB"
                     /locus_tag="PXC99_002155"
     CDS             1253..2617
                     /gene="dnaB"
                     /locus_tag="PXC99_002155"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDL5418569.1"
                     /translation="MSSPNKPTTHLYSAEAEAAVIGGLLLDNTLFDDVIGKINSADFY
                     FGVHQALFKGITDLIEVGKPADILTLDEYLKQKNLLKEIGGFAYLAEVSKNTPSAANV
                     GAYADVVLLHSKHRQLLKLGQFIVDQTQTVKTPEKLESVIDEVEKKMTEFSLSDNTKS
                     ATDLSDIFASMLSRMELSAKNGDPVTGTPTGIQGIDEATTGGQPGDLIVIGARPSMGK
                     TAFSQTIAYHTLEKFESAPVFYHSMEMPADQILQRFLAMRARVGLQNIRQADRLDDEE
                     WAKLTAAMGYILEHWKNRLVIDDEGSLTPQKLRTKVRQNARKYGKPSAIFIDYIQLMQ
                     TSQRYENRNLEIANISRSLKLLAKEMDCPVYALSQLNRSLEQRANKRPINSDLRESGS
                     LEQDADVILFIYRDEIYDEDSAFKGTAEIIIGKQRNGPLTSVMTNFRSEFALFENRAS
                     TASH"
     gene            2626..4275
                     /locus_tag="PXC99_002156"
     CDS             2626..4275
                     /locus_tag="PXC99_002156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL5418570.1"
                     /translation="MTKDEKRLAAIAKGLNVSPISNTAPSYQTATPAHYSSDEEYITV
                     TLDKLRPYEHNPRKTRNPNFEMIKESIRRRGLDHKPNITRRPGEDFYIIADGGNTRIQ
                     ALKELFTETKDPKFWSISCQYKPWQGDTADSVEAELNLLIGHLIENDTRADLSFIEKA
                     LGILQAKEYYEKKLNKSLSARELATELEGDGYIIHYTLANKMERCVLYLYPHIPEVLF
                     KGLGHTQIDKLLAIRNNAEEVWAAHQFDTDITFESLWSENLSKFNEATPFQAKEFQSE
                     LITAMVEALDGKVSFETLYLDIDLDEQKFKKIAAKQQEIDNLVEKTVDQINTRQEQQA
                     AKFEPVIKNENKSVATESAKNVIDDVIDDNESDNEQNNAITDLSQLDAPLLDSQDNQT
                     EDYLSQIAHNFGLTPGMSIQEQREQRAESNGLTFACEGRQPVEDIWLIHPARQYRSEA
                     YSLALDIAESVGIDHLVEHVVKQPVDYTYAMKPTDSELSPSVLTLYSFLSMLQTAKHK
                     DENNCVLDSNFLFELDDITLVKLFRLIRVSRHIHQQGGEND"
     gene            4268..4825
                     /locus_tag="PXC99_002157"
     CDS             4268..4825
                     /locus_tag="PXC99_002157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2857 domain-containing protein"
                     /protein_id="HDL5418571.1"
                     /translation="MIKPITVNEALIGNALLNIKEGNIHPCLKMGFSEEQLKAINNLS
                     IDEIMDISNSVVSFAKVEINHETFWKLLAIAQTNTQQRQIIDRALLLGASIEMLHQYF
                     GLSTSEVSARRQLLGIEEKMGRKAAASDEESTHIWEIWQRYKQRMESLDSQEGLELLC
                     LIAEEGNMNLTVVWKLVSEWYSKHK"
     gene            4984..6169
                     /locus_tag="PXC99_002158"
                     /pseudo
     CDS             4984..6169
                     /locus_tag="PXC99_002158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252650.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         2121 a         1251 c         1308 g         1798 t
ORIGIN      
        1 ttgttcactt agttatccac aggtgatgtg cataactatt tttgtaaaga tgaattgagt
       61 gctgattttt aaatcaaccg atttcaaaag gcatttttac gcttgcacaa gcggtcatat
      121 ttccctataa tcgtgcaaaa attaagccag tgtggcgaaa tcggtagacg cagcggattc
      181 aaaatctttt gcgtagacta ataggaaata ctggcgattg aataaaaaac actctcagcc
      241 tgagtgatga aattggtaga catgatggat tcaaaatcca ttggtgaata accgtgtcgg
      301 ttcgagtccg acctcaggca ccattcaact gcgttccttt caaataatac tcactctaaa
      361 tatacagttt ataatgccaa tactccttaa cttcaacttt gttaagagag taaattatga
      421 aaccattaca aaacggtaca aacaaacctt ttaccattac tattgcttcg accaaaggag
      481 gctctgccaa gagtacgaat gccgctaaca ttggtgcatt ctgtgcagaa cacggtctaa
      541 gaacccttct tattgatacc gatactcaac ccacattaag ctcttattat gagttggaat
      601 atcaagctcc cggtggaact tatgaatttc tgcattttaa agatgtagat cctacccaca
      661 ttatttctag aacggctatc ccaaatcttg acttgatcca gtctaatgac ccgtcaaata
      721 aaatcagccc aatgctaaga gactcaccgg acggggcttt acgttttagt ttactgctcc
      781 agaaaattga aggctatgat gtcattatca ttgatacccg tggcactcga gatattactg
      841 tagatatgtc ggtattggct gctgatgttc ttttctgccc gattcttcct catatcttgt
      901 cagctaaaga atttattcgt ggcacaattg gtatgtatca agatctagaa acttttacag
      961 cctttggttt taccctgcca ccgttaaaag caatgattaa ctgtgttgat cataccaaag
     1021 atgtcaaatt ggtttccgac tacctgcata ctctcttcca aaatgagttt gatgaaaaca
     1081 aaacattact ggaattttct gtgcctgatc gtgtggcata ccgagaagcg gcaacttttt
     1141 caaaacctgt ctatcgccag agccaagctg aatatgaaac cattcgtcag ctttgtgcat
     1201 tactgatgcc acagtttgca caatcacatt tttctgagta gttgggggat ttatgtctag
     1261 cccaaataaa ccaaccaccc atctctattc agcagaagct gaagccgctg tcatcggggg
     1321 attgttatta gataacactc tctttgacga tgtcattggc aagattaatt cggctgactt
     1381 ttattttggt gtgcatcaag ccttattcaa ggggattacg gatttaattg aggtggggaa
     1441 acctgcagat attctcacat tagatgaata cctaaaacag aaaaatctgt tgaaggaaat
     1501 cggcggtttt gcctatcttg cagaagtttc aaaaaacacc ccttcggcgg ccaatgtggg
     1561 ggcttatgct gatgtggttc tgttacacag taaacaccgg caacttttaa aactggggca
     1621 gtttattgtc gatcagacac agactgtgaa aacaccggaa aaacttgaat cagttattga
     1681 tgaagttgag aaaaaaatga ctgaattcag cctttctgac aataccaaat ctgcaacaga
     1741 tttaagtgat atttttgcca gtatgctctc tcgtatggag ctttcggcta aaaatggtga
     1801 tcctgtgact ggaacaccga caggtattca aggcatcgat gaagcgacta ccggtgggca
     1861 accgggtgat ttaattgtga ttggtgcccg tccttcgatg ggaaaaaccg cattttctca
     1921 aactattgcc taccatacac ttgaaaaatt cgagtcggct cctgtgttct atcacagtat
     1981 ggaaatgccg gcagatcaga ttttacaacg ttttcttgct atgcgtgccc gagtcggatt
     2041 gcaaaatatt cgacaagcag accgcttgga cgatgaggaa tgggcaaaat tgacagctgc
     2101 aatggggtat atccttgaac actggaaaaa tcgcttagtt attgatgatg aaggtagtct
     2161 gactcctcaa aaattaagaa ctaaggttcg ccaaaatgcc cgtaagtatg gaaaaccgtc
     2221 agccattttt attgactata ttcagcttat gcagacttcg caacgctatg aaaaccgcaa
     2281 tttggagatt gcgaatattt ctcgctcact taagttgtta gccaaagaga tggattgccc
     2341 tgtttatgct ttatctcagc tgaaccgctc attggaacag cgggccaata aacgccctat
     2401 caactctgat ttacgagaat ccggctcact tgagcaagat gccgatgtca ttttattcat
     2461 ctatcgagat gaaatttatg atgaagattc cgccttcaaa ggcactgctg aaattattat
     2521 cggtaaacaa cgaaacggac cgctgacttc agtaatgacc aattttagaa gtgagtttgc
     2581 actttttgag aatagagcaa gcacagcatc acattaggac agattatgac aaaagatgaa
     2641 aaaagattag cagctatagc gaaggggcta aatgtttcac ctatttcaaa tacggcaccc
     2701 tcctatcaga ctgcgacacc ggctcattac agtagtgatg aggaatatat tacggtgaca
     2761 ttagataagt tacggccgta tgaacataac cctagaaaaa cccgtaatcc taactttgag
     2821 atgatcaaag agtcaatccg gcgtcgtggg ttagatcata aacctaatat tacccgccgt
     2881 ccgggagaag atttttacat tatcgctgac ggcggtaata ctcgtattca ggcacttaaa
     2941 gaattgttta ctgagaccaa agatccgaaa ttctggtcta tcagttgcca atataagcct
     3001 tggcaaggtg atactgccga cagtgtcgaa gccgaactca atttacttat cgggcatttg
     3061 atcgaaaatg atacccgtgc ggatttgtca tttattgaaa aagctcttgg tattttacag
     3121 gcgaaagaat attacgagaa gaaattgaat aaatcacttt cagcaaggga attagctact
     3181 gagttagagg gtgatggcta tattatccac tatacgttgg ctaataaaat ggagcgatgt
     3241 gtactttatc tatatcccca tattccagaa gttctattta aaggtttagg gcatactcaa
     3301 atcgataagt tattagctat tcgtaataat gccgaagagg tatgggcagc ccatcaattt
     3361 gatactgata ttacttttga atcgctctgg tcagaaaatt tatccaaatt taatgaagct
     3421 acaccatttc aagcaaaaga attccaaagt gaattgatta cggcaatggt tgaagcttta
     3481 gatggaaaag tgagttttga aacactttat ctagatattg acttagatga acaaaaattc
     3541 aaaaaaatag cggctaaaca acaagaaatt gataatttag ttgaaaaaac agtcgatcaa
     3601 atcaatacca gacaggaaca acaagcagca aaatttgaac cagttatcaa aaatgaaaat
     3661 aaatctgttg ccacagaatc agctaaaaat gttattgatg atgtaataga tgataacgaa
     3721 agtgacaatg agcagaataa cgccattact gacttatctc agctagatgc tccattgtta
     3781 gatagccaag ataatcaaac tgaggattat ctctcccaaa ttgctcataa cttcggacta
     3841 acaccgggaa tgagcattca agaacagcga gagcaacgag cagaatccaa tgggctcact
     3901 ttcgcttgcg aaggtcgcca gccggttgaa gatatttggt tgattcatcc tgctcgtcaa
     3961 tatcgttcag aggcgtattc ccttgcctta gatattgcag agagtgtggg cattgaccac
     4021 ttggttgaac atgttgtgaa acagcctgtg gattacactt atgcaatgaa accgacagat
     4081 agtgaacttt caccgtctgt tctaacactc tattcattcc tttcaatgtt acagacagct
     4141 aaacataagg atgaaaataa ctgtgtccta gattccaact tcctgtttga gcttgatgat
     4201 attaccttag tcaaactttt ccgtctcatt cgggtcagtc gccatattca tcaacaagga
     4261 ggagaaaatg attaagccaa ttaccgtaaa tgaagcattg attggtaacg ccctgctcaa
     4321 tattaaagaa ggaaatatcc atccttgttt aaaaatggga ttttctgaag agcaactaaa
     4381 agcaatcaat aatctcagta ttgatgaaat tatggatatt agcaactccg tagtgtcttt
     4441 tgcaaaagta gagattaacc acgagacttt ttggaaatta ctggcaattg cacaaactaa
     4501 tactcaacag cgacaaatta tagaccgggc tttattactg ggagcctcta ttgagatgct
     4561 gcaccagtat ttcggtttat cgacatcaga ggtttcagca cgccgtcaat tactcggcat
     4621 tgaagagaag atgggacgga aagccgcagc aagtgatgag gaatccactc atatttggga
     4681 gatttggcaa cgatataaac aacgaatgga aagcctagat tcacaagaag ggttagagct
     4741 tctttgcctg attgctgagg aaggtaatat gaatctaact gttgtttgga aactagtttc
     4801 cgaatggtat tcaaaacata agtaaaaaac aaatgccccg aagttggagc tttggggcat
     4861 tcgatattgg gtcttgtata tctatcctat gaattacaag gactttgccg aagtcccgtg
     4921 cattatagtc ataggaggga gaatagcaag agaaaaactc ttttatccta gtggagagaa
     4981 acaatgttta gcagtacgaa taagccaaca gggcatggat tactattttt tggcaaccaa
     5041 cacgaaacag tccctactcg attattacaa gatccctgcc ttacaccaag agcaaagttt
     5101 gcttggcagc tcattaagtg caatgttcag gcctttcaag gaggattatt tccctcttat
     5161 gagacgctca gcaaaatgtt atccgataga ccttatgcgg aggctaaatt atcggaaaaa
     5221 gtcgtgactc aaacactcta tttactccgt cttactcgct ggcttacttt atgtgaaaca
     5281 gtgcgtgatg agcgaggtta tgtacaaggt aatgtgtata tcctgcacga tgaacctgtg
     5341 ccaattttag atgcaattca attaaatagc gactatctct cttttttaga taaatgcacc
     5401 aaacataaag atagccttat taatggtgtg gcaaatcata ttgttgaaag tctaatgaca
     5461 gacaaaacca aatggcatta tgtctctcat ttagactgtt tgcaaagtcg ttatcaaaca
     5521 taccagcaac agcagctggt gaaagataaa cagccatcgc aaacagaaca agaattaagc
     5581 aaaattcaac aaaatatcct gacttccact atggaagtta gggattttga tgaggaagtc
     5641 aggaaaaaat cctcaaaaaa ccagacttcc aataaggaag ttagggctaa aaatgaagat
     5701 aagtcattga ttttagactt acttccatta aggaagtcag atgtacagta ctttatatat
     5761 taataagtac tgtactgggg aacctagcga aattacttgg ccacaagaaa tcccactaac
     5821 ctcacttgaa caaaaactca ctgcacaggc aatgaaagga ttcgatctcg gtttatgcca
     5881 agctattttg ctggaagcac aacaacgcat tattcaaaag caggatgtga aaaaaccgaa
     5941 aggttatctc tatacgctta tccagcgggc gaagcagggt gaatttaaac cctactattt
     6001 tgaattagga aaaaatcttc cctcacaaaa tcagactaac aataattctg ctcattctat
     6061 acaaaaactg actgagcagc ctactgagaa accggtatta actccagcag acagagagca
     6121 aatggcgagc cgtatgcaga agtttagagc tgaattactt ttacaataag gttaaaaaac
     6181 aatcactgtt aaggggctta acagcgagca aaaaacagac agcgtgtagg gattacacag
     6241 tgagtgaaaa ataatcagtg aagcggcccg cttcaaaggc taaaaaataa tcactgtaaa
     6301 cactgtttac aatgattaaa aaacaatcag tgtagagggg ttctacagtg agtaaaaaat
     6361 aatcagtgta gagggactct acaatgagca aaaaacaatc agtgtgtagg gggtacacag
     6421 tgattaaaaa acaatcagtg tagaggggtt ctacagtgag taaaaaataa tcagtgta
//
LOCUS       DANLVT010000126         6378 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.126, whole genome shotgun sequence.
ACCESSION   DANLVT010000126 DANLVT010000000
VERSION     DANLVT010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6378)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6378)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6378
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.126"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            400..1932
                     /locus_tag="PXC99_002159"
     CDS             400..1932
                     /locus_tag="PXC99_002159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HDL5418572.1"
                     /translation="MNLVDYSTSLWSVLPALIALILAIVTRKVIISLSIGILFGAFML
                     TNSNFLDALTYIKNSVVSLVYKGAEEGLNSNNVNIILFLLLLGVLTSLLSISGSNQAF
                     ANWAQKKVKGKRGAKLMAAGLVFFTFIDDYFHSLAVGAIARPVTDKFRVSRAKLAYIL
                     DSTAAPMCVLMPISSWGAYIITLIAGLLATHSITGYSPLGAFMTMSAMNFYAIFAMIM
                     VFFVAYFSFDIGSMARFERQAAHLAELDDEQIETKGHVRDLILPIIALIVATVSMMMK
                     TGADALAESGASFSILGAFENTTVGISLVVGGVAGLIVATICIITSGNISFKNYVRAY
                     GLGVKMMSGAITILFFAWTINGVVSDMQTGKYLSGLVAESIGAEFLPAILFVLAAAMA
                     FSTGTSWGTFGIMLPIGASMAVHSDPALIIPCLSAVMAGAVCGDHCSPVSDTTILSST
                     GAQCNHMDHVISQLPYALLVATASIIGYLVVGFTQSAVLGFIATAVVMAILILLFKEK
                     KH"
     gene            2158..2910
                     /locus_tag="PXC99_002160"
     CDS             2158..2910
                     /locus_tag="PXC99_002160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL5418573.1"
                     /translation="MKIALVTGVTAGFGLAICKLLLQSGYKVIGTGRRAERLEELHLQ
                     FGDKFLPLAFDIQQPDEVEKALNSRPKAWQQIDLLVNNAGLALGLEPAQKADLNDWYQ
                     MIDTNIKGLVTMTRLVLPEMVERKSGHIINIGSIAGTYPYPGGNVYGGTKAFVKQFSL
                     NLRADLAGTKVRVSNVEPGLCGGTEFSNVRFKGDDEKAAKVYENVQFVRPEDVANIVL
                     WLNQQPEHVNINRVEVMPVAQTSSALNVARNI"
     gene            2922..4112
                     /gene="trpB"
                     /locus_tag="PXC99_002161"
     CDS             2922..4112
                     /gene="trpB"
                     /locus_tag="PXC99_002161"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HDL5418574.1"
                     /translation="MSDTLLNPYFGEFGGMYVPEILVPVLKELEQAFVDAQQDPTFQA
                     EFADLLKNYAGRPTALTLCRNLTKGSKTKLYLKREDLLHGGAHKTNQVLGQILLAKRM
                     GKTRIIAETGAGQHGVATALACAMLGMPCVVYMGAKDVERQSPNVFRMRLMGAEVIPV
                     QKGSCSLKDACCEAMRDWAANYDTTHYLIGTAAGPHPFPTMVREFQKMIGEEIKRQIL
                     AKEDRLPDAVIAAVGGGSNAIGMFADFIEEQSVKLIGVEPAGKGIETGEHGAPLKHGT
                     TGIYFGMKSPIMQDKDGQIEESYSISAGLDFPSVGPQHAYLNATGRAEYVSITDAEAL
                     EAFQALAKNEGIIPALESSHALAYALKMIKQNPEKEQLLVVNLSGRGDKDIFTVDKIL
                     NGGE"
     gene            4114..4920
                     /gene="trpA"
                     /locus_tag="PXC99_002162"
     CDS             4114..4920
                     /gene="trpA"
                     /locus_tag="PXC99_002162"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HDL5418575.1"
                     /translation="MSRFDTLFTALKAKNEGAFVPFVTLCDPGFERSFEIIDTMIKNG
                     ADALELGFPFSDPLLDGPVIQAANKRALDGGYSTDSCFELIAKIRAKYPDIPIGLLLC
                     ANLIFVPTAEVFFQRCQQSGVDAVLIADLPVFAAQEFVPTAEKYGIQPVFICPPNADQ
                     NTIERIAQLTQGYTYLVSRAGVTSAENQAHASNLDNLVESLKQAGAAPILQGFGIAKP
                     EQVKEALRLGADGAISGSAIVKIIERNLADQANLLKELAEFVQVMKAATK"
     gene            4970..6376
                     /locus_tag="PXC99_002163"
     CDS             4970..6376
                     /locus_tag="PXC99_002163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgA family protein"
                     /protein_id="HDL5418576.1"
                     /translation="MKLTKIVLSVVAVIGAVAVGGSWYTGKQVEEKYQELVVQANNQL
                     KQLSGEFGANIELKDVQIDRHFFISNAKYRLEVDLGNGKKLDFVGNDKLHHGPLPLNR
                     LAKLNLAPVMMSAESKLQAPEALKKLMGEHIGTGFSNISYSGDVEGHFDISPIKHSDE
                     TGHIETTPIKVQYSYDQKLKGVDSTVELESLKIKAEEFDFQIQGIVYDVQTENNESYP
                     NLTLGKGSGKINAIEFKSKDGKLSQIKDVVVKGDNLLKGDRLISTGDLEAATFNIEGV
                     EMGKLKMDMAYDLDAKLTNDITPLLSNPQTLENEKTGELLLQLLAKSFKFHINNFSLE
                     NSKGKVDLALLLNMAQFDPQNLGNMQAVLQALSTSKFTSNINRQYAEDIIRQVSIVTE
                     KLGEEEAKAFAKQQVDAVFLNAGVEQYGLRKVDDNNVKIELTIDNGKVNLNGRELTED
                     ELQMALFMIVMGAGSLGQ"
BASE COUNT         1917 a         1098 c         1431 g         1932 t
ORIGIN      
        1 ttatgctcct tttatcatat ctcaaaaggc attttaggta aataagcata aataaaaaaa
       61 tagatacttt atatctaaag atattcgtgc tatcttaaac actgtcctac aaattgtaga
      121 ggtgcgaatt caataagtat ttcttctgag tggaaaacga tgaaggggaa ggaaaggtga
      181 atttgccgaa atcaattaag cgtcatctta attggttggg gtcgttgtcg aaagaaacga
      241 cactgtcgta gtaaatgcta cggagtgcta ctgttagggt gggtttcaga tatttcacat
      301 ttgccttcct ttcatattta tttttataaa tatcccagta gatctcttgt ttggctattc
      361 ttatttatac aaattataca cagtcatttt agaggtttta tgaatctagt tgattattct
      421 acgtcacttt ggtcggtatt gccggcactg attgcgctaa tattggcaat tgtgacacgc
      481 aaggtgatta tttcacttag catcggtatt ctctttggtg catttatgct tactaatagc
      541 aattttcttg atgcacttac ttatattaaa aatagcgttg tttctttagt ttataaaggg
      601 gctgaagaag gattaaattc aaataatgtt aacattattt tatttttgct tttattaggg
      661 gtattaacgt cattattaag tatttcaggt agtaatcagg cgtttgcgaa ttgggcgcag
      721 aaaaaggtaa aaggcaaacg aggcgcaaaa ttaatggcgg caggtttggt tttctttacc
      781 tttattgatg actatttcca cagtttagca gtaggtgcga ttgcccgccc tgttacggat
      841 aaattccgtg tttctcgtgc taaattagct tatattttag attctaccgc cgctccaatg
      901 tgcgtgttaa tgccaatttc aagctggggg gcttatatta ttaccttaat agctggctta
      961 ttggctacgc attccatcac aggctattcg ccactaggcg catttatgac aatgagcgca
     1021 atgaactttt acgccatttt tgcgatgatt atggtgttct ttgtggcata tttctcattt
     1081 gatattggtt cgatggcgcg ttttgaacgt caagcagcgc atttagcaga attagatgat
     1141 gagcaaattg aaacgaaagg acacgtgcgc gatttgattt tgccaattat tgcacttatt
     1201 gttgctacag tctcaatgat gatgaaaaca ggtgcagatg cactggccga atcaggtgct
     1261 tcattttcta tactaggtgc ttttgaaaat actacggtag gcatttcatt agttgttggt
     1321 ggtgtggcag ggcttatagt tgcaactatt tgtatcatta caagcggtaa tatttctttt
     1381 aaaaattacg tccgtgctta tggcttaggt gtgaagatga tgtctggtgc aatcactatt
     1441 ctcttctttg cgtggacaat aaacggcgta gtaagtgata tgcaaacagg gaaatatcta
     1501 tcaggattgg ttgcagaaag cattggagca gagtttttac ctgcaattct atttgtgtta
     1561 gccgcagcaa tggcgttttc aacaggaact agctggggaa catttggtat tatgttgcca
     1621 attggagcct caatggcagt gcattcagat ccagcattaa ttattccttg tttatctgca
     1681 gtaatggctg gtgcggtttg tggtgatcac tgttctccag tatctgatac cactattctt
     1741 tcttcaacag gcgcacaatg taatcatatg gatcatgtca tttctcaatt accttatgct
     1801 ttattagttg caacagcttc tattattggt tacttagtgg ttggctttac ccaatcagcg
     1861 gtattgggat ttattgctac agctgttgtt atggcaatac tcattttgct ttttaaagaa
     1921 aaaaagcatt aatttccgaa aatgtgaagg gaatcacaga atgagattta ttgatgagat
     1981 aaaatagcac tcaagatatg gatatcgaat gttgtgttat ataaatctta aaataagatc
     2041 ctcctagcat tagcgtacct tttggtacgc ttttttcttt tatggcaata ttatttcttg
     2101 caattttaat ttttttgtac tactttaata gtacatttta aatttgaggg tgaaaagatg
     2161 aaaatagcat tagtcacagg agtaactgct ggatttgggt tggcaatttg taaattattg
     2221 cttcaatcgg gttataaagt aattggcacg ggcagacggg cagagcgttt agaagaactg
     2281 catttacaat ttggcgataa atttctaccg cttgcatttg atattcaaca gcccgatgag
     2341 gtggaaaaag cactgaatag ccgccctaaa gcgtggcaac aaattgattt attagtaaac
     2401 aatgcaggcc ttgcactcgg cttagaaccg gcacagaaag cagatttgaa cgattggtat
     2461 caaatgatcg ataccaatat taaaggattg gtaacgatga cacgcttagt tttgcctgaa
     2521 atggtggagc ggaaaagtgg gcatattatt aatatcggct cgattgccgg cacttaccct
     2581 tacccgggcg gtaatgtata tggtggtact aaagccttcg tgaaacagtt tagcctaaat
     2641 ttgcgggcag atttagccgg cactaaagtg cgtgtttcca atgttgagcc ggggctatgt
     2701 ggcggtacgg aattttcaaa tgtacgcttt aaaggcgatg atgaaaaagc ggctaaagtt
     2761 tatgaaaacg tgcagtttgt gcgcccggaa gatgtggcaa atattgtgct ttggctgaat
     2821 cagcaacctg aacacgttaa tattaatcgg gttgaagtga tgccggtggc tcaaacttct
     2881 tctgccttaa atgtagcgag aaatatttaa aaggaaatat tatgtcagac acacttctta
     2941 atccttattt tggtgaattt ggtggtatgt atgtgccgga aattttagtg ccggtgctaa
     3001 aagaattaga acaagccttt gtagatgctc agcaagaccc aacattccaa gctgaatttg
     3061 ccgatttact caaaaactat gccggtcgcc cgactgcttt aaccctttgt cgtaatttaa
     3121 ccaaaggcag taaaaccaaa ctctatttaa aacgtgaaga tcttttacac ggtggggcac
     3181 ataaaaccaa ccaagtgcta gggcaaatct tactcgctaa acgaatgggt aaaacccgca
     3241 ttattgccga aacaggagca ggacagcacg gtgtggcaac cgcattagcg tgtgcgatgt
     3301 taggaatgcc ttgcgtggtg tatatgggcg caaaagatgt agaacgccaa tcgccaaatg
     3361 tattccgtat gcgtttaatg ggagcggagg tgattccggt acaaaaaggc tcttgctcgc
     3421 tcaaagatgc ctgttgcgag gcaatgcggg attgggcggc aaattatgat actacccatt
     3481 acctaatcgg cactgcagcc ggcccgcacc cgttcccgac aatggtgcgt gaatttcaga
     3541 aaatgattgg cgaagagatc aaacgtcaaa ttttagcaaa agaagaccgc ttgcctgatg
     3601 cggtgattgc tgccgtaggc ggtggctcaa atgctatcgg tatgtttgca gattttatcg
     3661 aagagcaatc cgtcaaattg atcggtgttg agccggcagg aaaaggaatt gaaaccggtg
     3721 aacacggtgc accgctcaaa cacggcacaa cggggatcta tttcggtatg aaatcgccga
     3781 ttatgcagga taaagacggg caaattgaag agtcttactc catttcagcc ggcttagatt
     3841 tcccttctgt cgggccgcaa cacgcttatt taaatgcgac agggcgagct gaatatgtat
     3901 cgattaccga tgcagaggct ttagaggcat tccaagcatt agccaaaaat gaggggatta
     3961 ttccggcgtt agaatcttcc cacgccttag cctatgcgtt aaaaatgatt aagcagaacc
     4021 ctgaaaaaga gcagttatta gtggtgaatt tatcgggtcg aggcgataaa gacattttca
     4081 ccgtggataa aattttaaat ggaggagagt aaaatgagcc gctttgatac gctatttact
     4141 gcattaaaag caaaaaacga aggggctttt gtgccgtttg tgacattatg cgatcctggt
     4201 tttgaacgca gttttgagat tatcgacacg atgattaaaa acggggctga tgctttagag
     4261 ctaggctttc cgttttctga ccccctctta gacgggccgg tgattcaagc agcgaataaa
     4321 cgagctttag atggtggcta tagcactgat agctgttttg agctgattgc caaaattcga
     4381 gctaaatatc cagacattcc tatcggttta ctactgtgtg ccaatttaat ttttgtgcca
     4441 accgcagaag tatttttcca acgttgccaa caaagtggag ttgatgcggt gttgattgct
     4501 gatttgcctg ttttcgctgc tcaagagttt gtgccaaccg ctgaaaaata tggaattcag
     4561 ccggtgttta tttgcccgcc gaatgctgat caaaacacca ttgaacggat tgctcaatta
     4621 acccaaggct acacttattt agtttcccgt gccggtgtaa ctagtgctga aaaccaagct
     4681 cacgcaagta atttggataa tttagtggaa agtttaaaac aagccggagc tgcccctatc
     4741 ttacaaggtt ttggcatagc caaacctgaa caggtaaaag aggcgttaag gcttggggca
     4801 gacggggcga tttcaggctc agcgattgtg aaaattattg aacgtaattt agctgaccaa
     4861 gctaatttgc tcaaagaact tgccgaattt gtacaagtga tgaaagcggc tacgaagtaa
     4921 actacaagcg gtcatttttt aaattttttt gaaaataaaa ggaaacagaa tgaaattaac
     4981 aaaaattgtt ctttcagttg tagcggtaat tggtgctgtt gcagttggcg gaagttggta
     5041 cacaggtaag caggttgaag aaaaatatca agaattggtt gttcaagcta ataaccaact
     5101 taaacaactg agtggcgaat ttggtgcgaa tattgagctt aaagatgtgc agatcgatcg
     5161 ccatttcttt atctctaatg cgaaatatcg tttagaagtg gatttgggta atggtaagaa
     5221 attggacttt gttggtaatg ataaacttca tcacggtccg ctaccgctta atcgtttagc
     5281 gaaacttaat ttagctcctg taatgatgag tgcggaaagc aaattacaag ctcctgaagc
     5341 ccttaaaaaa ttgatgggtg aacatattgg caccggtttt tctaatatca gctattcggg
     5401 cgatgtggaa gggcattttg atatttcccc gattaaacat agtgatgaaa caggtcatat
     5461 tgaaaccacg ccaatcaaag tgcaatatag ctacgaccaa aaattaaaag gggttgatag
     5521 cactgttgag ctagaaagtc ttaagataaa agcagaagaa tttgattttc aaattcaagg
     5581 tatagtttat gatgttcaaa cagaaaataa tgaaagttat cctaatttaa ctttaggcaa
     5641 aggtagtgga aaaattaacg ctattgagtt taagtctaaa gatggcaaat tatctcaaat
     5701 taaagatgtt gtggtgaagg gcgataatct attaaaaggc gatcgtttaa tttctaccgg
     5761 agatttagag gcagccactt tcaacattga gggtgttgaa atgggtaaat taaaaatgga
     5821 tatggcatac gatttagatg ctaaattaac caatgatatt acgcctttat tatctaatcc
     5881 tcaaacatta gaaaatgaaa aaacaggcga gttattatta caactattag caaaatcatt
     5941 taaattccat attaataatt tctcacttga aaacagcaaa ggcaaagttg atttggcttt
     6001 attactgaat atggctcaat ttgacccaca aaatcttggt aatatgcaag cggtattgca
     6061 agccctttca acaagtaaat tcacttcaaa tatcaaccgt caatatgcgg aagatattat
     6121 tcgccaagtc tcaatagtta cagaaaaatt aggcgaagaa gaggcgaaag catttgccaa
     6181 gcaacaagtt gatgctgttt ttctcaatgc gggagttgaa cagtacggat taagaaaagt
     6241 agatgacaac aatgtgaaga ttgaattaac tatagataac ggaaaagtga atttaaacgg
     6301 acgtgaactg accgaagatg aacttcaaat ggctctgttt atgattgtga tgggagcagg
     6361 ctcactcggg caataatc
//
LOCUS       DANLVT010000127         6357 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.127, whole genome shotgun sequence.
ACCESSION   DANLVT010000127 DANLVT010000000
VERSION     DANLVT010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6357)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6357)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6357
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.127"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(168..1454)
                     /gene="purD"
                     /locus_tag="PXC99_002164"
     CDS             complement(168..1454)
                     /gene="purD"
                     /locus_tag="PXC99_002164"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HDL5418577.1"
                     /translation="MNILIIGNGGREHALAWKVRQSPLADKVFVAPGNAGTAMENGIE
                     NVAISATDVPALVTFAKQNSVGLTIVGPEAPLVVGVVDAFRAHGLTIFGPTQAAAQLE
                     GSKAFTKDFLARHQIPTAEYQNFTEIEPALAYLKQKGAPIVIKADGLAAGKGVIVAMT
                     LQEAEDAVRDMLSGNAFGEAGSRVVIEEFLDGEEASFIVMVDGKNVEPMATSQDHKRV
                     GEGDSGLNTGGMGAYSPAPVVTKAIHQRVMDEIIYPTVQGMASENTPYTGFLYAGLMI
                     MPNGQPKVIEFNCRFGDPETQPIMMRLESDLVELCLKACEGKLDSVQSKWCEQAALGI
                     VLAAAGYPGDYRKGDEIIGIPTSTSNQKVFLAGVEQKEGKLLTNGGRVLCATALGNSV
                     FEAQQQALQLAEQIQWQGKFYRRDIGYRAVARKQAK"
     gene            1688..2062
                     /gene="rpsF"
                     /locus_tag="PXC99_002165"
     CDS             1688..2062
                     /gene="rpsF"
                     /locus_tag="PXC99_002165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HDL5418578.1"
                     /translation="MRHYEIVFMVHPDQSEQVPAMIERYTASVKEAGGQVHRLEDWGR
                     RQLAYPINKLHKAHYVLMNVEAPQSVIDELETNFRYNDAVLRNLIVHTKAAVTEASPM
                     VKAKESKVAEAVAEVESEEAGE"
     gene            2037..2411
                     /gene="priB"
                     /locus_tag="PXC99_002166"
     CDS             2037..2411
                     /gene="priB"
                     /locus_tag="PXC99_002166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N"
                     /protein_id="HDL5418579.1"
                     /translation="MNQRKQASNLPIDNCLILSGTVSSLVKQSLNPLGVPHYSFWLEH
                     RSIQTEVNLERQAWCKIQVVLAGNQFSYLTQQIKLGESVRIKGFIHTHKDFNGLNQLV
                     LHTEQIEFIDQEKPNGTLFPSS"
     gene            2386..2613
                     /gene="rpsR"
                     /locus_tag="PXC99_002167"
     CDS             2386..2613
                     /gene="rpsR"
                     /locus_tag="PXC99_002167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HDL5418580.1"
                     /translation="MARYFRRRKFCRFTAENVVEIDYKDIATLKNYISESGKIVPSRI
                     TGTRAKYQRQLARAIKRARYLALLPYTDNHQ"
     gene            2629..3078
                     /gene="rplI"
                     /locus_tag="PXC99_002168"
     CDS             2629..3078
                     /gene="rplI"
                     /locus_tag="PXC99_002168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HDL5418581.1"
                     /translation="MQVILLDKVAHLGSVGDQVTVKSGFARNFLIPQGKAVMATAANI
                     AHFEARRAELEAKAAAALATAQERAAKIAALAAVSVSATAGDDGRLFGSVSAKDIAEA
                     LTAAGVGVAKSEVRLGEGPLRTTGEHQVKIHLHPEVNATVAVNVVAE"
     gene            complement(3142..3918)
                     /gene="dnaQ"
                     /locus_tag="PXC99_002169"
     CDS             complement(3142..3918)
                     /gene="dnaQ"
                     /locus_tag="PXC99_002169"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HDL5418582.1"
                     /translation="MTEEKIIRQVVLDTETTGMNMAGGPPQIGHNIIEIGAVEVINRR
                     LTGRTYHVYIKPPREVDEEAIAVHGITNEFLQDKPVFAEIAEEFLDFIKGAELIIHNA
                     PFDVAFMDQEFSYLPNPPAKTAEMCTVTDSLQMARRMYPGKRNNLDALCDRLGIDNSK
                     RVLHGALLDAEILADVFLMMTGGQISLLGEEETEVVSEVIDIEEEFSAIVLNADEAII
                     LKANDEEEESHLALLKLIEKKSKGNCLWTKALTDTAEISH"
     gene            complement(4006..5676)
                     /gene="ettA"
                     /locus_tag="PXC99_002170"
     CDS             complement(4006..5676)
                     /gene="ettA"
                     /locus_tag="PXC99_002170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HDL5418583.1"
                     /translation="MSTQFVYTMHRVGKVVPPKRHILKDISLSFFPGAKIGVLGLNGA
                     GKSTLLRIMAGVDKEFEGEARPQPGIKIGYLPQEPKLAPQQTVREAVEEAVAEVKNAL
                     TQLDEVYAMYADENADFDKLAAKQAELEAIIQAHDGHNLQNQLERAADALRLPDWDAK
                     IEHLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDYEGTVVAITH
                     DRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKEKRLAQEQAAESARQKSIEKELEW
                     VRQNPKGRQAKSKARMARFEELNSGEYQKRNETNELFIPPGPRLGDKVIEVQNLTKSY
                     GDRTLIDDLSFAIPKGAIVGIIGANGAGKSTLFRMLSGKEQPDSGSIVLGETVVMASV
                     DQFRDAMDDKKTVWEEVSNGQDILTIGNFEIPSRAYVGRFNFKGVDQQKRVGELSGGE
                     RGRLHLAKLLQRGGNVLLLDEPTNDLDVETLRALENAILEFPGCAMVISHDRWFLDRI
                     ATHILDYGDEGKVTFYEGNFSDYEEWKKKTFGEAATQPHRVKYKRIAK"
     gene            5882..>6357
                     /locus_tag="PXC99_002171"
     CDS             5882..>6357
                     /locus_tag="PXC99_002171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418584.1"
                     /translation="MYVQKHSNYSTALLVVIREKINSLPHQGLILDLISISKDDLDDI
                     LEGNTDMNIHQLLSLIYKAGFFDVLNITNNLCIKLSQFGFYFQNGNLSQKDDELLSLY
                     REFYKHNEFITHLKSHSLYGCIEQPTSAFFHYCTNENFRNAFNEESLYDFQMWNVF"
BASE COUNT         1698 a         1433 c         1334 g         1892 t
ORIGIN      
        1 tgacagtttt ttccacatat agggcacgca gagtcattta gaaaagagtt tactgcatcg
       61 tttaatgata gtgatttaat ttcggggcct gcatcgagtt cagtgatatt aatttcatta
      121 agtgttgtac tcataataaa tttttccttg ttttaagagt ttataaatta tttcgcttgt
      181 tttcttgcca ctgctcggta gccaatatct cggcgataga atttgccttg ccattgaatt
      241 tgttcggcaa gttgtaaggc ttgttgttga gcttcaaata cactgttgcc aagtgcggtg
      301 gcacaaagta cacgtccacc gttggtgagc agttttcctt ctttttgctc aacccctgct
      361 aagaaaactt tttgattgga ggtagaggtc ggaatgccta tgatttcatc gcctttacgg
      421 taatcgcccg ggtagcctgc ggcagctaaa acaatgccta atgcggcttg ttcacaccat
      481 tttgattgca cgctatccaa tttgccttcg cacgctttta agcacaattc aacgaggtct
      541 gattccaaac gcatcataat cggctgagtt tcagggtctc caaaacggca gttaaattca
      601 atcactttcg gctgaccgtt tggcataatc attaagccgg catagagaaa accggtgtaa
      661 ggggtatttt cgcttgccat tccttgcacg gtcgggtaaa taatttcgtc cattacacgt
      721 tggtggattg cctttgttac caccggagca ggggagtaag cccccattcc gccggtattt
      781 aagccgctat cgccctcgcc aacacgtttg tggtcttgtg aggttgccat tggttcgaca
      841 tttttgccgt ccaccatcac aataaaactg gcctcttctc cgtctaaaaa ttcctcgatc
      901 accacacggc tgccggcttc accaaaggcg ttgcctgaca gcatatcacg cactgcatct
      961 tccgcctctt gtaaagtcat tgcaacaatt acgcctttgc ctgcggctaa accgtctgct
     1021 ttgattacaa tcggtgcacc tttttgtttt aagtaggcaa gtgccggttc aatttcggtg
     1081 aaattttggt attctgcggt tggaatctga tggcgagcca agaaatcttt ggtaaatgct
     1141 ttagaacctt ctaattgagc agcggcttgg gtcgggccga aaatggttaa accgtgggct
     1201 cgaaaagcat caaccacgcc aactactaac ggtgcttcag ggccgacaat cgtcaaacct
     1261 acgctatttt gtttagcgaa tgtaactaag gcaggcacgt cagtggcgga aatagctaca
     1321 ttttcaatgc cgttttccat cgctgtgccg gcattgccgg gggcgacaaa gactttgtct
     1381 gcgagcggcg attgacgaac tttccaagca agagcgtgtt cacgcccacc gttgccgata
     1441 attaaaatat tcattgggat tccttgcaaa aatgataaag caaacgtttg cgtattgtac
     1501 ttgatttgtt tatctgctga caagcagtcg tttttctcgg attttttgca aaatacgaaa
     1561 ttgttgcttg caaaataggc ttttttcagt ataatcctgc cgttcagtca cattcgtttt
     1621 ttaatccttg cttccacaag ttggtgactg gctaaagttg gaggctgcta acccgtaagg
     1681 atagtcaatg cgtcactacg aaatcgtttt tatggttcac ccggaccaaa gcgaacaagt
     1741 accagcaatg attgagcgct acacagcgtc tgtaaaagaa gctggcggtc aagttcatcg
     1801 cttagaagat tggggtcgtc gtcaattagc atacccaatc aacaaacttc acaaagcaca
     1861 ctatgtgtta atgaatgtag aagcacctca aagtgtaatc gacgagttag aaactaactt
     1921 ccgttataac gatgcagttc ttcgtaactt aatcgttcac actaaagcgg cagtaactga
     1981 agcgtcacca atggtgaaag cgaaagaaag caaagttgct gaagcggtag ctgaagttga
     2041 atcagaggaa gcaggcgagt aatttgccga ttgataattg tttaatctta agcggaacgg
     2101 tttccagctt ggttaaacaa agcctaaacc cccttggtgt gcctcattac agtttttggt
     2161 tagaacatcg ttcaatccaa accgaagtga atttagaacg ccaagcgtgg tgcaaaatcc
     2221 aagtggtttt ggcaggcaat caatttagtt atttaaccca acaaattaag ctcggtgaga
     2281 gcgtgagaat taaaggtttt atccatactc acaaagactt taacggttta aatcagttag
     2341 tcttacacac cgaacaaatt gaatttatag atcaggagaa gccaaatggc acgttatttc
     2401 cgtcgtcgta agttctgccg tttcacagcg gaaaatgttg ttgaaatcga ttacaaagat
     2461 atcgctacat taaagaacta catttctgaa agcggcaaga ttgttcctag ccgtattact
     2521 ggtactcgtg cgaagtatca acgtcaatta gctcgtgcaa ttaaacgcgc tcgctacctt
     2581 gcgttacttc catatactga taaccaccaa taatcaggag agagtacaat gcaagttatt
     2641 ttattagaca aagttgctca cttaggttct gtgggcgacc aagtaaccgt taaatctggt
     2701 tttgctcgta acttcttaat cccacaaggt aaagcggtta tggcaactgc ggcaaacatt
     2761 gctcactttg aagcacgtcg tgcagaatta gaagcaaaag ctgcagcagc attagcaact
     2821 gcacaagaac gtgcagcgaa aattgcagca ttagcagcag tatcagtatc tgcaactgca
     2881 ggtgatgatg gtcgtttatt cggttctgta tcagctaaag acatcgctga agcattaact
     2941 gcagcaggtg ttggagttgc taaatctgaa gttcgtttag gtgaaggtcc acttcgtaca
     3001 accggcgaac accaagttaa aattcactta caccctgaag tgaatgcaac tgtagcagta
     3061 aacgttgttg ctgaataatc agtagaaata gaaaacccag cgaaagctgg gttttttgtt
     3121 tgctttattt attggttaga atcagtgaga tatttctgct gtgtcggtta atgcttttgt
     3181 ccataggcaa tttcctttgg attttttctc aatcagtttc agaagtgcta aatgcgactc
     3241 ttcctcttca tcgtttgctt taagaataat tgcctcatcg gcatttaaca caattgcaga
     3301 aaattcttct tcaatatcaa taacttcact taccacttca gtttcttctt cgcctaataa
     3361 tgaaatctga ccgccggtca tcattaggaa tacatcagct aagatctccg catccagtaa
     3421 cgccccgtgt agtacacgct tgctattatc aatgccgagc ctgtcgcaaa gtgcatctaa
     3481 attattccgt ttgccggggt acattcttcg tgccatttgc aggctatcgg ttacggtaca
     3541 catttctgcg gtttttgccg gtggattagg cagataagaa aattcttgat ccataaacgc
     3601 cacatcgaag ggggcattgt gaataattaa ttccgcacct ttgatgaaat ccaaaaactc
     3661 ctcggcaatt tcagcaaaaa caggtttatc ttgcaaaaat tcattggtga tgccgtgaac
     3721 tgcaatcgcc tcttcatcta cctcacgcgg tggcttgata taaacgtgat aagttctgcc
     3781 ggttaaacgg cggttaatga cttcaaccgc accgatctca ataatattat gcccaatctg
     3841 tggcgggcca cctgccatat tcattcctgt ggtttcagta tccagcacta cttggcggat
     3901 aattttttct tctgtcatat tcaatttaaa attgtagggg tgaaatattt ttatccctta
     3961 attctgcatt tgattagggg cgaaacatat ttcgccccta cattgttact tcgcaatccg
     4021 tttatatttc actcggtgcg gttgggtggc ggcttcaccg aaggttttct tcttccactc
     4081 ttcatagtcg gagaagttac cctcgtagaa cgtcactttg ccttcatcgc cgtagtctaa
     4141 aatatgggtg gcgatacggt ctaagaacca gcggtcgtgc gaaattacca ttgcacagcc
     4201 cgggaactct aagatcgcat tttccaacgc acgcagggtt tctacgtcta agtcgttggt
     4261 cggctcgtcc agtaacaaca cgttaccgcc acgttgtagt agcttcgcca agtgtaaacg
     4321 accacgttca ccgcctgaaa gctcgcccac acgtttttgc tgatctacgc ctttgaagtt
     4381 gaaacgcccc acataagcac ggcttgggat ttcaaagtta ccaatcgtga gaatatcctg
     4441 cccgttcgac acctcttccc acacggtttt cttatcgtcc atcgcatcac ggaactgatc
     4501 gaccgatgcc attaccaccg tttcaccaag cacgattgaa ccagaatccg gctgttcttt
     4561 accagaaagc atacggaaca aggttgattt acccgcacca tttgccccga taatcccgac
     4621 aatcgccccc ttcggaatag cgaacgacaa gtcgtcaatc aaagtgcgat cgccgtaaga
     4681 tttagtcagg ttttgtacct cgatcacttt atcacctaag cgtggacccg gtggaataaa
     4741 gagttcgtta gtctcgttac gtttttgata ttcgcctgag ttaagctctt caaagcgtgc
     4801 catacgagcc ttacttttcg cttggcgacc ttttggattt tggcgtaccc attccaactc
     4861 tttctcaatc gatttttgac gagccgattc cgccgcttgc tcttgtgcca agcgtttttc
     4921 tttctgctcc aaccaagaag agtagttacc ttcccaagga atgccttcac cacggtcaag
     4981 ctctaagatc cagcccgcaa cgttgtctaa gaagtaacgg tcgtgggtaa ttgccactac
     5041 ggtgccttcg tagtcgtgga ggaaacgctc caaccacgcc accgattccg catctaagtg
     5101 gttggtcggc tcatctaaca ataacatatc cggtttttcc agcaacagac ggcaaagtgc
     5161 cacacggcgg cgttcacccc ctgataaatg ctcgattttt gcgtcccaat ccggcagacg
     5221 taacgcatcg gcagcacgct ctaactggtt ttgaaggtta tggccatcgt gggcttgaat
     5281 aatcgcctct aattccgcct gttttgccgc taatttgtcg aaatcggcat tctcatcagc
     5341 atacatcgca tagacttcat caagctgggt taaggcgttt ttcacttccg caaccgcttc
     5401 ttccaccgct tcacgcacgg tttgctgtgg ggcaagtttc ggttcttgtg gaagatagcc
     5461 gattttaatt cccggttgtg gacgagcctc gccctcgaac tctttatcta cgcccgccat
     5521 aatgcgtaaa agcgttgatt tacccgcccc gtttaagccg agcaccccga ttttcgcccc
     5581 cgggaaaaag ctcagggaaa tatctttaag aatgtgacgc ttcggcggca cgactttgcc
     5641 gacacggtgc atcgtatata caaattgagt tgacattggt tgtattcctc acaaaaaaat
     5701 tcgccttatt ttacttgaat ttacagccaa aatatagggt ggttttggct tttggtaaag
     5761 taaccttttc caatagagat gttatttgag gctgcatagt actatgcatt tctcttacct
     5821 tgacaggtaa gagaaacaaa tcctgaagga aaaaaatttt aaggaagtta ttctatgcaa
     5881 tatgtatgtc caaaaacact caaattattc aacagcattg ttggttgtta taagggagaa
     5941 gattaattct ctacctcatc aaggcttgat tttagattta atatccattt ctaaagatga
     6001 tttagatgat attttggagg gtaatactga tatgaatatt catcaattat taagcctgat
     6061 ttataaggct ggattttttg atgtattaaa catcacaaat aatctatgta taaaactcag
     6121 tcaatttggt ttttatttcc aaaatggcaa tttgagccaa aaagatgatg agcttttgag
     6181 tttatataga gaattctata aacataacga gtttatcact catctcaagt cccatagtct
     6241 ttatggatgt attgagcaac ctacttcggc attttttcat tattgtacta atgaaaactt
     6301 tagaaatgcg tttaatgaag agagcctcta tgattttcaa atgtggaatg tgtttag
//
LOCUS       DANLVT010000128         6308 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.128, whole genome shotgun sequence.
ACCESSION   DANLVT010000128 DANLVT010000000
VERSION     DANLVT010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6308)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6308)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6308
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.128"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            102..1328
                     /locus_tag="PXC99_002172"
     CDS             102..1328
                     /locus_tag="PXC99_002172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease"
                     /protein_id="HDL5418585.1"
                     /translation="MAMPSQRFSLTWVLNLFGTAVGAGVLFLPINAGMGGFYPLIIMT
                     LLVGPMTYLAHRGLTRFVLSSKYKGSDITAVVREHFGEQAGKLITLLYFFAIFPILLI
                     YGVGITNTVSSFMENQLHIAPPSRAVLSFMLIAAMIGVMLLSEQVMLKITTCLVYPLV
                     LILLGLSIYLIPQWNTAALQQMPTTGDFLTTLWLTIPVLVFAFNHSPAISSFALSQQK
                     YYQDDKKAEIESAKVLRSTAFILVLFVMFFVFSCVLTLTPEELAQAKVQNISILSYLA
                     NKFDNPIISYFGPLVAFLAIGSSFFGHYLGAREGLEGLVNQMRKEPIDPSKFRKITAI
                     TFLIILWIVATINPSILGFIESLGGPIIAMILFIMPVYAVYKVPALARFKGEFGHLFV
                     LVMGCIAISAIVYGLL"
     gene            1385..2761
                     /locus_tag="PXC99_002173"
     CDS             1385..2761
                     /locus_tag="PXC99_002173"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000626422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HDL5418586.1"
                     /translation="MISVFDMFKVGIGPSSSHTAGPMKAAKEFVDELQNRKFLNKIDR
                     LRVDVYGSLSLTGRGHNTDIAIIMGLMGYLPHNVDIERIEQTIENLKQNKQLIIAESS
                     VEPKVIAFDFYEDMPFHRDFLPRHENGVKFSALSGEELLFQNTYYSIGGGFIVDEANF
                     EQVKNSDLSVPFPYQNAADLLAHCKNNGLPLSSLVWKNELALRSRVEISDYLAMIWNT
                     MEACIERGLNTEGLLPGPLKVVRRASGLRRMLEANSKFNTDPMQIIDWVNMFALAVNE
                     ENAAGGRVVTAPTNGACGIVPAVLAYYQKFIAQLNQDTIERYLLTTSVIGSLYKMNAS
                     ISGAEVGCQGEVGVACSMAAAGLTEIMGGSAEQVCMAAEIAMEHNLGLTCDPVGGQVQ
                     VPCIERNAIASVKAINASRMALRRTSSPQVSLDKVIETMYETGKDMNAKYRETSTGGL
                     AIKILPCD"
     gene            complement(2816..4405)
                     /gene="purH"
                     /locus_tag="PXC99_002174"
     CDS             complement(2816..4405)
                     /gene="purH"
                     /locus_tag="PXC99_002174"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005821463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HDL5418587.1"
                     /translation="MAIQQALLSVSDKKGIVEFARGLSARGVKLLSTGGTAKLLAEAG
                     LLVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGTDDEVMNQHGIERIDMVVVNLY
                     PFAQTVANPNCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVNNNDFDAILAEMDQHQ
                     NSLTLETRFNLAIKAFEHTAQYDSMIANYFGQKVPPYQGAEEEDLTQPSGQFPRTLNL
                     NFVRKQTMRYGENSHQNAAFYVENELKEASVSTAKQLQGKALSYNNIADTDAALECVK
                     EFSEPACVIVKHANPCGVALGKNILDAYNRAYQTDPTSAFGGIIAFNRELDGETAQTI
                     ADRQFVEVIIAPTVSASAKEVLATKKNVRVLECGEFSEAVKRLDFKRVNGGLLVQDAD
                     QGSVSIDDLKVVSERKPTEAELKDLLFCWKVAKYVKSNAIVYAKDGQTIGIGAGQMSR
                     VYSAKIAGIKAEDEGLQVVGCVMASDAFFPFRDGIDAAAKVGITCVIHPGGSMRDQEV
                     IDAANEHGMAVVLTGMRHFRH"
     gene            4577..4846
                     /locus_tag="PXC99_002175"
     CDS             4577..4846
                     /locus_tag="PXC99_002175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDL5418588.1"
                     /translation="MINHNLADFVFEYFTENNLKAGTLRYRYIKENVIDAYSTRVDDA
                     FQGKGIAGELYNALIAFAQEKGLKIKPSCSYIEVKMQRSHRDLIA"
     gene            complement(4933..>6308)
                     /gene="dacB"
                     /locus_tag="PXC99_002176"
     CDS             complement(4933..>6308)
                     /gene="dacB"
                     /locus_tag="PXC99_002176"
                     /EC_number="3.4.16.4"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
                     /protein_id="HDL5418589.1"
                     /translation="TQAEINTEELLNTLPAGTSVSFIAKNLDTNQIITQYQSDIFMLP
                     ASTQKVFTALAAKLTLNDDFRFQTALLTNGKVENGVLKGNLIARFSGDPELTSGQIYQ
                     LMSKLKQQGINKIEGDLILDPSVFASHDKASGWIWNDLTMCFNAPPAAINVDHNCFYV
                     TLNADQPIGEFAKVNVPSAYPVQVFSSAYIVEPKEAPFCQLDVVVHDNNRYQIKGCMA
                     RQSQPFGLSFSVQDPTNYGANMLKAQLKSLKIAFNGQVKEPLTAQNGTLLAEHYSEPL
                     PVLLKKMMKKSDNQIADALFRTVANKQHNRPASFQLGSYVIRQLLKTKANIDFKNSVV
                     ADGSGLSRHNQVSSRTMLETLEYIAQNEESLKLFETFPIAGVDGTISGRGSISTEPLA
                     KNLIAKTGSLKGVYNLAGFMKNARGERIAFVQFINGYSTGELESKTKRAPLNTFENKF
                     YMALFNE"
BASE COUNT         1745 a         1243 c         1350 g         1970 t
ORIGIN      
        1 tttaatagtt tgatcaaaaa atacgtaaaa tcttgttgtg ttactgtttc ccatcgctaa
       61 tatagcatag cttgttagat aattctttaa aggagattac tatggctatg ccatctcaac
      121 gtttttctct tacttgggta ctaaatttat ttggtactgc ggtaggagcc ggcgttttat
      181 ttttgccaat taatgcaggt atgggtgggt tctacccact tattattatg actttgttag
      241 ttggaccaat gacatattta gctcaccgtg gcttaacacg ttttgtgctt tcttcaaaat
      301 acaaagggag cgatattacg gctgttgttc gtgaacattt tggtgaacag gccggtaaat
      361 tgatcacgct actgtacttc tttgccattt ttccgatttt actgatttat ggtgtaggta
      421 ttaccaatac cgtgagttct tttatggaga atcagcttca tatcgcgcca ccatctaggg
      481 ctgtattatc gtttatgcta atagctgcta tgatcggagt aatgttatta agtgagcaag
      541 tcatgttaaa aatcacaact tgtcttgtgt atccattagt gttgatttta ttgggcttat
      601 ctatttattt aattccacag tggaatacag ctgccttaca gcaaatgcca actacaggag
      661 acttccttac tacactttgg ctgactattc ctgttttagt ctttgctttt aaccattcac
      721 cggctatttc ttcttttgca ctttctcaac agaaatatta ccaagatgac aagaaggctg
      781 aaattgaatc agctaaagta ttacgttcta ccgcctttat cttggtgtta tttgtgatgt
      841 tctttgtatt tagctgtgta ttaactttga cacctgaaga attagcacaa gctaaagtgc
      901 aaaatatttc gattctttct taccttgcga ataaatttga taatccgatt atttcctatt
      961 ttggaccgtt ggttgctttt ttggcgattg gtagctcttt ctttgggcat tatttaggtg
     1021 cgcgcgaggg gttagaagga ttggttaatc aaatgcgtaa agagccgatt gatccaagca
     1081 aattccgcaa aattaccgct attacttttt tgatcatttt atggattgtt gcgactatca
     1141 atccaagcat tttaggcttc attgaaagcc ttggtgggcc gattattgcg atgatcttgt
     1201 ttattatgcc tgtctatgcc gtatataaag taccggcact tgcacgtttt aaaggtgaat
     1261 ttggccattt atttgtgctt gttatgggtt gtattgctat ttcagcaata gtatatgggt
     1321 tactgtaatc tttctaaaat caatgtagaa tacgcccttt tattttctat gtgaatttgt
     1381 gtttatgatt agtgtatttg atatgtttaa agtagggatt gggccttcca gttcccatac
     1441 tgcggggccg atgaaagcgg caaaggaatt tgtcgatgaa ttacaaaatc gcaaattttt
     1501 aaacaaaatt gaccgcttgc gggtagatgt ctatggttca ttatcactca ccgggcgagg
     1561 acataatacg gatattgcca tcataatggg attaatgggg tatttgcctc ataatgtgga
     1621 tattgaacgt attgagcaga cgattgaaaa tctaaaacaa aataagcaac ttatcattgc
     1681 tgaaagcagt gttgagccta aagtgattgc gttcgatttt tatgaggata tgccatttca
     1741 tcgagatttc ttacctcggc acgaaaatgg tgtgaaattt agtgccttga gcggtgaaga
     1801 gttgctattt caaaacacct attattctat tggtggtggc tttattgttg atgaagctaa
     1861 ctttgagcaa gttaaaaatt cagatctttc tgttccattc ccatatcaga atgcagcaga
     1921 tttacttgca cattgtaaga ataacgggtt accgctttct tctttagtct ggaaaaatga
     1981 gcttgcttta cgcagtagag tagaaatttc ggattatttg gcaatgattt ggaatacaat
     2041 ggaagcctgt attgagcgtg gtttgaatac ggaagggtta ctacccgggc ctctgaaagt
     2101 ggtacgccgt gccagtgggc tacgcagaat gttagaggca aacagtaaat tcaataccga
     2161 cccaatgcaa attatcgatt gggtgaatat gtttgccctt gccgtgaatg aagaaaatgc
     2221 ggcaggtggg cgagtagtca ccgcacctac caatggagcc tgtggtattg ttccggctgt
     2281 gttggcgtac taccaaaaat ttattgcaca gcttaatcaa gatactattg agcgttattt
     2341 attgactacc agtgtgattg gttcgttata caaaatgaat gcctctattt ccggtgctga
     2401 agtaggttgc caaggggaag ttggtgttgc ttgttcaatg gcggcagcag gtttaacgga
     2461 aattatgggt ggcagtgctg aacaggtgtg tatggctgca gaaattgcaa tggagcacaa
     2521 tttaggccta acttgtgacc ctgttggcgg acaagtgcaa gtgccttgta ttgaaagaaa
     2581 tgcaatcgct tcagtcaaag cgattaatgc cagcagaatg gcactacgcc gtacttcttc
     2641 gcctcaggta agtttagata aagtcattga aacaatgtac gaaaccggca aagatatgaa
     2701 tgcaaaatac cgtgaaacct caaccggtgg cttagcaatc aaaattttac cttgtgatta
     2761 attaatgaaa aaggctacct tatcaaaata aggtagcctt ttagtttgta gaacattaat
     2821 gacggaaatg cctcattccg gttagtacca ctgccatacc gtgttcgttg gcggcatcaa
     2881 tcacttcttg atcacgcatt gaaccacctg ggtgaatcac acaagtaatc cctacttttg
     2941 cagcagcgtc aataccatca cggaacggga agaacgcatc ggaagccatt acacaaccca
     3001 caacttgtaa gccctcgtct tccgctttaa tacctgcaat ttttgcggaa taaacacggc
     3061 tcatctgccc tgcaccgata ccgatagttt gcccgtcttt ggcatacaca atcgcattcg
     3121 atttcacata tttcgccact ttccagcaga acaataggtc ttttagctca gcttcagttg
     3181 gtttacgctc tgaaaccacc tttaaatcgt caatagatac agagccttgg tcggcatctt
     3241 gcactaataa tccgccgttt acccgtttga aatctaagcg ttttacagct tctgagaact
     3301 cgccacattc aagcacacgc acgtttttct tagtggctaa cacttctttg gcagaagcag
     3361 aaacggttgg tgcaataatc acttcaacaa attgacggtc tgcgatggtt tgagcagttt
     3421 cgccgtctaa ttcacggtta aaggcaataa tgccaccgaa agcagaagtt ggatcggttt
     3481 ggtaagcacg gttgtaggca tctaaaatat ttttacccaa agcaacacca caagggttag
     3541 cgtgttttac aatcacacaa gcaggctcgc taaattcttt cacgcattca agagccgcat
     3601 cggtatctgc aatattatta tacgaaaggg ctttaccttg taactgtttg gcggtggaaa
     3661 cagaggcttc ttttaactca ttttcgacat agaatgcagc gttttgatgc gaattttcgc
     3721 cataacgcat cgtttgttta cgcacaaaat tgaggtttaa ggtgcgaggg aattgtccac
     3781 ttggttgggt taaatcttct tcctcagccc cttgataagg cggcactttt tgcccgaaat
     3841 agttggcaat cattgaatcg tattgtgcgg tatgctcaaa cgctttaata gcaagattaa
     3901 aacgggtttc taaagttaaa ctgttttgat gttgatccat ttcggcaaga atagcatcaa
     3961 aatcattgtt attgaccaca atcgccacat ctttatgatt tttcgctgca gaacgcacca
     4021 ttgtcggacc accgatatca atattttcca ccgcatcttc aaggctacaa tttggattgg
     4081 caacggtttg agcaaaaggg tagaggttta ctaccaccat atcaattcgt tcaatgccgt
     4141 gttggttcat cacttcatca tcagtaccac ggcgacctag aattccgccg tgcactttcg
     4201 ggtgcagggt ttttacacgc ccgtccatca tttcaggaaa gccggtgtaa tctgatactt
     4261 ctgttactag caaaccggct tcagccagta attttgcggt tccgcccgta gaaagtaatt
     4321 ttaccccacg agccgatagc ccacgagcaa attcgacaat gcctttttta tcagacacac
     4381 ttaataacgc ctgttgaatc gccattctta aattccttaa aatgagtgtt aacgtgaaaa
     4441 taaacggcaa agattataac gcaaacgttt gcttttttca tctacaagtg gtcgattttg
     4501 caaatttttc tgcaaaatcg accgcttgca ctcgtgatta aagcgggtag aatagaggaa
     4561 aaaaatcgga ggaactatga ttaaccacaa tttagcagat ttcgtatttg agtattttac
     4621 cgaaaacaac ctaaaagcag gcacactacg ttatcgctac ataaaagaga acgtgattga
     4681 tgcttacagt acccgagtag atgatgcctt tcaaggtaaa ggtattgcag gagagcttta
     4741 caatgcttta attgcgtttg cgcaagaaaa agggctgaaa atcaagccaa gttgtagtta
     4801 tattgaggta aaaatgcaac gaagtcatcg agatttaatt gcttagagag gagcaagcgg
     4861 tcgtaaaatt tcaaaaattt acgaccgctg tcttattcaa ttctcaaaaa tccatcacac
     4921 aaaatataag ccctattcat taaacaacgc catataaaac ttattttcaa atgtattaag
     4981 cggagcccgt ttggttttgc tttcgagctc gccggtggaa tagccgttaa taaattgcac
     5041 aaaagcgatg cgttcgccac gggcgttttt cataaagccg gcaaggttgt aaaccccttt
     5101 cagtgagccg gttttggcaa tcagattttt ggcaagcggt tctgttgaaa tagagcctct
     5161 gccggaaata gtaccgtcca cgcctgcaat cgggaaggtt tcaaacagtt ttaagctttc
     5221 ttcgttttga gcgatatatt caagggtctc cagcattgtt cggctgctga cttgattatg
     5281 acgggaaagc cctgagccat cagccaccac gctgttttta aaatcaatat tggctttggt
     5341 ttttaataac tggcgaatca cataactacc taattggaac gatgcggggc ggttgtgttg
     5401 cttgttggca acggttctaa acagggcatc ggcaatttgg ttatccgatt ttttcatcat
     5461 ttttttcaat aataccggca acggctcgga ataatgctcg gcaagtagcg tgccgttttg
     5521 ggcagtaagt ggctctttta cttgcccgtt aaaggcaatt ttcaggcttt ttaactgggc
     5581 tttaagcata tttgccccgt aattagttgg gtcttgcacc gaaaaactta agccgaacgg
     5641 ttgagactgg cgagccatac agcctttgat ttggtagcgg ttgttatcgt gaaccaccac
     5701 atcaagctgg caaaacggag cttctttcgg ctcgacaata taagcagagc taaacacctg
     5761 caccggataa gcggacggca cattcacttt agcaaattcg ccaatgggtt ggtcggcatt
     5821 taaggtgaca taaaaacagt tgtgatccac attaattgcc gccggtgggg cgttaaagca
     5881 catcgtcaag tcgttccaaa tccaaccgga ggctttgtcg tggctggcga aaaccgacgg
     5941 gtctagaatt aaatccccct caattttatt gataccttgt tgctttaatt tgctcattaa
     6001 ttgataaatt tgaccgcttg taagctcagg gtcgccacta aaacgggcaa ttaaattgcc
     6061 ttttaacact ccgttttcta cttttccgtt ggttaaaagg gcagtttgaa agcggaaatc
     6121 atcgtttaaa gttaattttg ctgccagtgc cgtaaagact ttttgggtac tggcaggtag
     6181 cataaaaata tcactttggt attgggtgat gatttggtta gtgtctaaat ttttagcaat
     6241 aaaactaaca gaagtaccgg caggcaaggt atttaataat tcttcggtat taatttcagc
     6301 ctgtgtaa
//
LOCUS       DANLVT010000129         6093 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.129, whole genome shotgun sequence.
ACCESSION   DANLVT010000129 DANLVT010000000
VERSION     DANLVT010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6093)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6093)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6093
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.129"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..185
                     /locus_tag="PXC99_002177"
     CDS             <1..185
                     /locus_tag="PXC99_002177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5418590.1"
                     /translation="ELVGTQTKLAEACGVSQPTVLKWLNGGGISAEYLLKIEAATNGQ
                     VTIREICEELGNATAK"
     gene            169..453
                     /locus_tag="PXC99_002178"
     CDS             169..453
                     /locus_tag="PXC99_002178"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418591.1"
                     /translation="MQQQNKSPEQAGLASGKFTVRRNQDGKWRLDLTLLDFGISSPET
                     TQARCKLLQELQLALLQGQGHLNTVGVNVRKAGPVVCVGSLLSDLLNHQE"
     gene            662..934
                     /locus_tag="PXC99_002179"
     CDS             662..934
                     /locus_tag="PXC99_002179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418592.1"
                     /translation="MNLDHTCTNCKSKNLRVRTSEKIGLLTIQAVTYCNNCGTEQLVQ
                     SQIIRVRTPIYKERPEAMRINKCLMEADLNTPDLFDGVVADQPKQD"
     gene            1017..1349
                     /locus_tag="PXC99_002180"
     CDS             1017..1349
                     /locus_tag="PXC99_002180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418593.1"
                     /translation="MSKQLYYRHKSRWNRLNRLKKMNKRRLNLFLQEKRVANLESRLA
                     DEVELAKLNSEQIGDLLQALELKVNRLIRQNEKLKARVIKLEKVKQTQKQGLFAMFKK
                     VLGSKGNP"
     gene            1362..1655
                     /locus_tag="PXC99_002181"
     CDS             1362..1655
                     /locus_tag="PXC99_002181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418594.1"
                     /translation="MDFVATYQKIRINTNHKQFTCNHLGEIWGKENDDFKRFLLRVAF
                     LQDNPEPKPWGAYSPQEKRLLHSFSLWLEQIADFQRVMKRESKLREKHINAPD"
     gene            1807..2049
                     /locus_tag="PXC99_002182"
     CDS             1807..2049
                     /locus_tag="PXC99_002182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418595.1"
                     /translation="MSLITVNDYKIKKDILDADGKPCYQLYQGEELLRDTTNLSEIIA
                     YMFIRAEDKPFDELYNHIINQEAGAKTDIKFTVTVR"
     gene            2046..2378
                     /locus_tag="PXC99_002183"
     CDS             2046..2378
                     /locus_tag="PXC99_002183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418596.1"
                     /translation="MSQITKSAYTHIHPNWQAPRGNTYRIERYELKRRYALFCNGERV
                     VLYKDPTHPNKNVESHIESDVLLLWLLKNELGWSGNIKEPLSPQDVENIRLLEQAFCL
                     TYNGTFIK"
     gene            2375..4735
                     /locus_tag="PXC99_002184"
     CDS             2375..4735
                     /locus_tag="PXC99_002184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication endonuclease"
                     /protein_id="HDL5418597.1"
                     /translation="MNYQNEILSATEAFAIGVSLPPVAGASACALELHSDRLYQAFKQ
                     PYTSMVQQELFSKDPIHEPLRQSYFERLPRALAEHFGRQYKQKLHYQSQYDTADWFKA
                     EMARKMPRIEAVISQYCDVFDFLKQSHQDLDFLAELDSNVYFGAGVDTQQAVQKIKQD
                     AEVKGIQLPMHLCRLENSSRYLKAHGIRPLAYQTEEQIKQLALGIAYRVRQIQQDNIE
                     QNMHKATDGDTAYSVLLECYRAMMGEVNKLKIDSPYQKKARKGRLTEEEITTGFLKMT
                     CEKWWTRKLSKIAEQMKEHLAIACGMVNMLSPYCSNARLKAFEAQRKANIDYLKSMII
                     ANIAEPEEQLSLFETWLKSASNPKIKRLELLTRMNGFERYADKQGHEGWFITLTAPSK
                     YHAMLSRTSSVNPKWNGASPAETQVYLVNTWAKIRAKLNREGVMAYGFRVAEPHADAT
                     PHWHLILFTRPEDMEKLRRVFLSYALEVDGTEAGAKKYRCKFKRIEKEKGSATGYLVK
                     YVSKNIDGFGMDGELSDEANIQAKENAARVGAWSSVWCIRQFQQLGNIPISLWRELRR
                     LGSVEQEDETLEKLRVIADSGEWDVFTEELGGALVKRADLVARITYTERKSETGEALY
                     TMYQEPSLKVSGIINIKNGVQINTRPKEWSIQLKPKNWEEQQLQKKLENATETERAEV
                     KRKYYEKLGFNEEAIALLGELAPPWTCVSNCTGSKNNQISEEARNCLRNELITMRGRV
                     TEHQIDDLLNGKRLKIWGNSQKTMFVSYSRGRLIEHIVDNYESFLN"
     gene            4748..5080
                     /locus_tag="PXC99_002185"
     CDS             4748..5080
                     /locus_tag="PXC99_002185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418598.1"
                     /translation="MVKFIRLNLINYFIEKDEYGEPVRCRAFRYDEIIQTKFIEGFRE
                     GEIPADDYGFEDWNGSVLILNEEGRKYFENYLFDVKKNYCRARDNYVYVLETLDEIEM
                     KLGLLEAK"
     gene            5080..5532
                     /gene="ssb"
                     /locus_tag="PXC99_002186"
     CDS             5080..5532
                     /gene="ssb"
                     /locus_tag="PXC99_002186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL5418599.1"
                     /translation="MNLVTLVGRLGQDPDIRTMQNGEKAAALSVATSEKWTDKQTGVK
                     KESTEWHRVVLYRRLAEIAELYVKKGHLVSIIGKIKTRKWTDSNGVERSITEIIAEQM
                     QMLSSGEKNTPNTPNKAENKPQPKQKNQDVMTADEQKDIPQFDDDIPF"
     gene            5543..5875
                     /locus_tag="PXC99_002187"
     CDS             5543..5875
                     /locus_tag="PXC99_002187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418600.1"
                     /translation="MREWEKQMPFSANLHIRPTGKFEVKNVNIEQIIGERGKNYGNFD
                     DVATMSQQLKAVLLDTNTQLKPHQKEAGEMICLKLARIFAGCNPDYEDNWRDIAGYAV
                     LGGKLNEK"
     gene            5865..>6093
                     /locus_tag="PXC99_002188"
     CDS             5865..>6093
                     /locus_tag="PXC99_002188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418601.1"
                     /translation="MKNKMGSKFIRVRVEHPQRKKEDIELVQDVVAYHIFNLFKFEES
                     GLRGFSQYDLEIDVKVKPVLEQKEMPVDVWID"
BASE COUNT         1998 a         1024 c         1454 g         1617 t
ORIGIN      
        1 ttgaacttgt aggaacacaa acaaaattag ctgaagcttg tggagttagt cagcctacgg
       61 tcttgaaatg gctaaacgga ggcggaattt ccgctgaata tctactaaaa atcgaagctg
      121 ccacaaacgg gcaggtaaca attcgtgaaa tttgtgagga gttgggaaat gcaacagcaa
      181 aataaaagcc ctgaacaggc agggctagcg agtgggaaat ttactgtaag acgtaatcaa
      241 gacggtaaat ggcgtttaga tttgaccttg ttggattttg gtattagttc gccagaaacg
      301 actcaagctc gttgcaaatt gcttcaagag cttcagcttg ctcttcttca aggtcaaggt
      361 catttaaata ctgtcggcgt gaacgttcga aaagccggtc cagtcgtttg cgttggtagt
      421 ctgttaagcg accttttaaa tcatcaagaa taatgttttt ggcgtttagt tgatggcgta
      481 agttttcaac ttcaacagtc agttcaataa tttgatcttc agtattcata aaatttcctt
      541 ttggagggtt aaacaatatc taaaacataa ccaaaattcg actgcttgtc tatggggata
      601 gataagccga aatcaacgta aagaatgtta atagagcctt ggggaaggcg taggggaaat
      661 aatgaattta gaccacacct gtacaaattg caaaagtaaa aatttacggg ttcgtacatc
      721 tgaaaaaatc ggtttgctga ctattcaggc tgttacttat tgtaataact gcggcacaga
      781 gcaacttgtg caaagtcaaa ttatccgtgt tcgcacaccg atttataaag agcgaccgga
      841 agcaatgcgt attaataaat gcttgatgga agccgatttg aacacgccgg atttgttcga
      901 tggcgttgtg gcagaccaac ctaagcaaga ctaatcccaa tttttaaaca atcgtcaaaa
      961 taagccttat ttgcataggg cgagattttt gcaccctaaa ttcaggaatt tgaacaatga
     1021 gtaagcaatt atattaccga cacaaatcac gttggaacag acttaaccgc cttaagaaga
     1081 tgaataaacg tcgccttaat ctgtttttgc aagaaaagcg ggtggcgaat ttagaaagcc
     1141 ggttagctga tgaagtagag ctggcaaagc tgaatagtga gcagattggc gatttactgc
     1201 aagcgttgga gttaaaagtg aatcggttaa ttcgccaaaa tgaaaagctg aaagcccgtg
     1261 tgattaagct ggaaaaagtc aaacagaccc aaaagcaagg tttgtttgca atgtttaaaa
     1321 aggtgttggg tagcaagggt aatccttagt aagaggtaga tatggatttc gtggcaacgt
     1381 atcaaaagat acgcattaac actaatcaca agcaatttac ttgcaatcac ttaggcgaga
     1441 tttgggggaa ggaaaacgac gattttaaac gtttcttact acgagtcgca ttcttgcagg
     1501 ataaccccga gccgaaacct tggggagcgt attccccaca agaaaaacgc cttttacata
     1561 gttttagctt gtggttagag cagatagcag attttcagcg agtaatgaaa agagaatcaa
     1621 aactgcgtga aaaacatatt aacgcaccgg attagaagga gtaaatatga gccgtaaccg
     1681 tgaattgtgt gagttttttc acaaactgtg gtgcaaaacc ggtaatcgct atgcttatcg
     1741 ccggtatcaa gtgttttttc agcgttatca aaacgaatgt ttagtgaatg agtagagggt
     1801 agaaaaatgt cattaattac tgtgaacgat tacaaaatca agaaagatat tttagatgca
     1861 gacggcaagc cgtgttatca gttgtatcaa ggcgaagagc tattgcgtga taccaccaat
     1921 ttaagcgaaa tcatcgctta tatgtttatt cgtgccgaag ataaaccgtt tgatgagttg
     1981 tataaccata tcatcaacca agaagcagga gctaaaacag atattaaatt tacggtaacg
     2041 gtgagatgag ccagattact aaatccgctt acacacatat tcacccaaac tggcaagccc
     2101 cgagaggtaa cacttaccgg attgagcgat atgagctaaa acggcggtat gccttatttt
     2161 gtaatggtga gagggtagtt ttatataaag acccaacaca ccccaataag aacgtagaga
     2221 gccatataga aagtgatgtt ttgttgttat ggctactgaa aaatgaatta gggtggagcg
     2281 gtaatattaa agagccgtta agccctcaag atgttgagaa tatccgcttg ttagagcaag
     2341 cattttgttt aacttataac ggaactttca ttaaatgaat tatcagaatg agattctatc
     2401 tgctacagag gctttcgcaa taggtgtttc actcccacct gttgccggtg cttctgcttg
     2461 tgcattagag cttcattctg atcgtttata tcaagcgttc aaacagcctt acacttcaat
     2521 ggtccagcaa gaattattct cgaaagaccc tattcacgaa ccgttacgcc aatcttattt
     2581 tgagcgtttg cctcgtgcct tagcagagca tttcggcaga cagtataagc aaaagctaca
     2641 ttaccaaagc caatacgaca cagcagactg gttcaaagcg gaaatggcac gcaaaatgcc
     2701 acgcattgag gcagttatta gccagtattg cgatgtattc gattttctga agcaatccca
     2761 tcaagattta gattttttag ctgaattaga tagtaatgtt tatttcggtg ccggtgttga
     2821 tacgcaacaa gcggtacaaa aaattaaaca agatgccgaa gtgaaaggta ttcaactgcc
     2881 tatgcacctt tgccgtttag agaatagctc tcgctattta aaagctcacg gcattcgccc
     2941 gcttgcttac caaaccgaag agcaaatcaa acagcttgcc ttaggtattg cttatcgtgt
     3001 tcgccaaatt cagcaagata acatcgagca gaatatgcac aaagcgacag atggcgacac
     3061 agcctatagt gtgttgcttg aatgctatcg ggcaatgatg ggagaggtaa ataagctcaa
     3121 gattgattcg ccttatcaga aaaaagcgag aaagggtaga ttaactgaag aggaaattac
     3181 cacaggcttt ttaaaaatga cctgtgaaaa atggtggact agaaagttat ctaaaattgc
     3241 cgaacagatg aaagagcatt tagctattgc gtgcggtatg gtgaatatgc tttcgcctta
     3301 ctgttcaaat gctcgcttga aagcgtttga ggctcaacgc aaggcgaata ttgattattt
     3361 gaaatcaatg atcattgcca atatcgccga gccggaagag caactttcat tatttgaaac
     3421 gtggttgaag tctgcctcta acccgaaaat taaacgcctt gaattactca ctcgtatgaa
     3481 tggatttgag cgttatgcag ataagcaagg gcacgagggg tggtttatta ccttgactgc
     3541 tccgtctaag tatcacgcaa tgctttcaag aaccagtagc gtgaacccga aatggaatgg
     3601 agcaagccct gcggaaacac aggtttacct tgtgaatact tgggcgaaaa tccgtgccaa
     3661 actcaaccgt gagggcgtaa tggcttacgg ttttcgagtg gctgaacctc acgctgacgc
     3721 taccccacac tggcatttaa ttctattcac tcgtccggaa gatatggaaa agcttcgccg
     3781 cgtgttcttg agttatgcct tagaggtcga tggcacagaa gccggtgcga aaaaataccg
     3841 ttgcaaattc aagcgtattg agaaagagaa aggctcggca acgggctatt tagtgaaata
     3901 tgtttctaaa aacattgacg gttttggaat ggacggcgag ctttcagacg aggcaaatat
     3961 tcaggcgaaa gagaatgccg ctcgtgtagg agcgtggtct agcgtttggt gtattcgaca
     4021 gttccagcag ttaggtaata ttccgatcag cttatggcgt gagttacgcc gtttggggag
     4081 tgtagagcaa gaagatgaaa ctttagagaa actccgtgtg attgcagata gcggtgagtg
     4141 ggacgttttc accgaagaat taggcggtgc gttggttaaa cgtgccgatt tagttgcacg
     4201 tattacttat accgaacgca aaagcgaaac cggtgaggcg ttatatacga tgtatcaaga
     4261 gccatcatta aaagtgagcg gcattattaa cattaaaaac ggtgtgcaga ttaatacacg
     4321 cccgaaagag tggagcattc aacttaaacc taaaaactgg gaggagcaac aattacagaa
     4381 aaaattagaa aatgcaaccg aaacggaacg agcggaggtt aaacgtaaat actacgagaa
     4441 gttagggttt aacgaagagg ctatcgcttt attaggggag cttgctcccc cttggacttg
     4501 tgtcagtaac tgtacggggt caaaaaataa tcagattagt gaagaggctc gaaattgcct
     4561 aagaaatgaa ctgattacaa tgcgaggacg ggttactgaa catcaaatag acgatttact
     4621 aaacggcaag cggttaaaaa tttggggaaa ttcgcaaaaa acaatgtttg tgagttatag
     4681 ccgtgggcgt ttaattgagc atattgttga taattatgag agttttttga attaggatat
     4741 taagaaaatg gttaaattta ttcgtttaaa tttgattaat tatttcattg agaaagatga
     4801 atatggagaa ccggtgcgtt gcagagcgtt tcgttatgat gagattattc aaactaagtt
     4861 tattgaagga tttcgagagg gagagatacc agctgatgat tatggatttg aagattggaa
     4921 tggttcggtt ctgattttaa atgaagaagg acgtaaatat tttgagaact atctttttga
     4981 tgtaaagaag aattattgta gagcaaggga taactatgta tatgtcttgg aaactttaga
     5041 cgaaattgaa atgaagttag gattattgga ggcgaaataa tgaacttagt cacattagtc
     5101 ggacgtttgg ggcaagaccc tgatattaga acaatgcaaa atggtgagaa agctgcggct
     5161 ttatcggtag cgacctctga aaagtggaca gataagcaaa caggtgtgaa gaaagaaagc
     5221 accgaatggc atagggtggt gctttatcgc cgattagctg aaatcgccga attgtatgta
     5281 aaaaaagggc atttggtatc aattatcggg aaaattaaaa cccgaaaatg gacggatagc
     5341 aacggtgttg agcggagtat tacagagatt attgccgagc agatgcaaat gctcagtagt
     5401 ggtgagaaaa atacgccaaa tacgccaaat aaggcagaaa ataaaccgca accaaagcag
     5461 aaaaatcaag acgtgatgac tgcggacgag cagaaagata ttccgcagtt tgatgatgat
     5521 attccgtttt agggggtgaa taatgagaga atgggaaaaa caaatgccat ttagtgcaaa
     5581 tttacatata agacctacag gaaaatttga agtgaaaaat gtaaacatag aacaaataat
     5641 cggagaacgt ggcaaaaatt acggcaactt tgatgatgtt gccacaatga gccagcagtt
     5701 aaaagcagtg ttgctggata ccaatactca acttaaacca catcaaaaag aggcaggcga
     5761 gatgatctgc ttgaaactgg ctcgcatttt tgcaggttgt aatccggact atgaagataa
     5821 ctggcgagat attgcgggtt atgcggtgct gggagggaaa ttaaatgaaa aataaaatgg
     5881 ggagtaaatt tatacgagtc agagttgagc atccacagcg gaaaaaagaa gatattgagc
     5941 ttgtgcagga tgtggttgct tatcatattt ttaatctttt taaatttgag gaaagtgggt
     6001 tacgggggtt tagtcagtat gatttggaaa ttgatgtgaa agttaagcca gtgttagaac
     6061 aaaaagaaat gcctgtagat gtttggattg atg
//
LOCUS       DANLVT010000130         6080 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.130, whole genome shotgun sequence.
ACCESSION   DANLVT010000130 DANLVT010000000
VERSION     DANLVT010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6080)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6080)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6080
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.130"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(76..1824)
                     /gene="dnaG"
                     /locus_tag="PXC99_002189"
     CDS             complement(76..1824)
                     /gene="dnaG"
                     /locus_tag="PXC99_002189"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDL5418602.1"
                     /translation="MKGTIPRSFIDDLIARTDIVEVINSRVKLKKAGRDYQACCPFHH
                     EKTPSFSVSQSKQFYHCFGCGVHGNVITFLMDYDKLEFPEAIEELAAMHGLEVPRENV
                     IQRDGKPQANFKTKRNLYELMEAVAKFYQQNLSHQIEPQSYLQQRGLSEEIIERFEIG
                     FAPNAFDAALRTFGQSQEDIQKLLDTGVLTKNDSGRIYDKFRNRVMLPIRDKRGRVIA
                     FGGRVLPNDEQGAKYMNSPETVIYHKGSELYGLYQALKVNETPDYLFVVEGYMDVVAL
                     AQFGVDNAVASLGTATTGEQIQQMFRCTEQIVCCYDGDRAGRDAAWRALENALPYLQD
                     GRQLKFIFLPDGEDPDTFVRSQGKEGFEQYVAQNAKPLSDFLFDSLLADVDLSSKEGK
                     SKLAALAVPLINRIPGEMLRVYLRNILGQKLGILDPTQIEALLPTKKAAEKPLHQAVK
                     MKRTPMRLLIALLIQNPYFVKFVPDVSALASLKDPGFTLLTDIVATCQQNAGISMGGL
                     LEHYREDPQYKIVEALANWDHLELPENIERTFIDTLDFLYAKLVELRKEELIAKDRTV
                     GLTDDEKKEYALLMFQ"
     gene            complement(1978..2193)
                     /gene="rpsU"
                     /locus_tag="PXC99_002190"
     CDS             complement(1978..2193)
                     /gene="rpsU"
                     /locus_tag="PXC99_002190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005701713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HDL5418603.1"
                     /translation="MPVIKVRENESFDVALRRFKRSCEKAGILAEVRAREFYEKPTTI
                     RKREKASLAKRHAKRNFRENARNTRLY"
     gene            complement(2341..2937)
                     /locus_tag="PXC99_002191"
     CDS             complement(2341..2937)
                     /locus_tag="PXC99_002191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Uma2 family endonuclease"
                     /protein_id="HDL5418604.1"
                     /translation="MSLLPMNEITSLNQLDLQKSYSYADYLLWKFKERVEIIKGKIVA
                     MSPAPTRFHQRISMKMTAKFLEVFDNHQCQIYSAPFDVRFPDENGKVKTVVQPDLCVI
                     CDVSKLDERGCVGAPDLVVEILSPGNTKREMKDKYELYQEQGVKEYWIVSPETRTIQI
                     FVLENGKYIGIQPVAEDEPATSVVFPALSFSTEKLFEL"
     gene            3079..4335
                     /locus_tag="PXC99_002192"
                     /pseudo
     CDS             3079..4335
                     /locus_tag="PXC99_002192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249514.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
     gene            complement(4437..5444)
                     /gene="rfbB"
                     /locus_tag="PXC99_002193"
     CDS             complement(4437..5444)
                     /gene="rfbB"
                     /locus_tag="PXC99_002193"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HDL5418605.1"
                     /translation="MIILITGGAGFIGSALVRYLIEHTPHTVINVDKLTYAGNLASLE
                     SVAHHERYHFEKADICASGQISEIFGKYQPDVVMHLAAESHVDRSISGAADFIQTNIV
                     GTYTLLEAARAYWDTLPEPRKSAFRFLHISTDEVYGDLAKSEELFTEKTPYNPSSPYS
                     ASKAASDHLARAWHRTYGLPTVITNCSNNYGAYQYPEKLIPLMILNALEGKSLPVYGN
                     GLQVRDWLFVEDHIRALYLVLQKGQIGETYNIGGHNEKTNIEVVRSICSILQEMVPNN
                     PLVVGQYADLITYVQDRPGHDFRYAIDTSKIEKELDWKPKETFESGLRKTVEWYLANR
                     N"
     gene            complement(5441..6022)
                     /locus_tag="PXC99_002194"
     CDS             complement(5441..6022)
                     /locus_tag="PXC99_002194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase"
                     /protein_id="HDL5418606.1"
                     /translation="MLEKIEKLIDEINKLHLAFSKDYFETGKIEKVNLKHTFAKVPTP
                     HILAYRLNLHESINDYLYRADLEGISYFYRVKTSESILDKIERFKQRSEGYPVNSILN
                     DIFGARIIVSSEVIQQVMESLDYWQEKYGLKNWYLRDKDEYVGIHIYFKNSSNFYYPW
                     ELQIWDKKDAEKNIQSHIKYKRNFVNQISYSPL"
BASE COUNT         1808 a         1274 c         1087 g         1911 t
ORIGIN      
        1 tcttcgttca tcacttctgc caaatctccc ctaacccctc tttgctaaag aggggaatta
       61 ttcgagctta aaattctact gaaacatcaa aagagcatac tcttttttct catcatcggt
      121 taagcccacg gttcggtctt tggcaattag ctcttctttg cgtaattcca ctaatttggc
      181 gtagagaaaa tcgagagtgt caataaatgt tcgttcgata ttttcgggta actctaaatg
      241 atcccaattt gcgagggctt caacaatctt atattgggga tcttcccgat aatgttcaag
      301 tagcccgccc atactgatac ctgcattttg ctgacaagtt gcgacaatat cggttaataa
      361 tgtaaagcca ggatctttca aggaggctaa agcacttaca tcgggtacga atttcacaaa
      421 atacggattt tgaatcaata acgcaatcaa cagccgcatt ggcgtacgtt tcattttgac
      481 cgcttgatgt aaaggcttct ctgccgcttt tttcgtcggt aacagagctt ctatctgcgt
      541 tgggtctaaa atgcctaatt tctgtcctaa aatattgcgt aaatacactc gcagcatctc
      601 gcccggaata cgattaatta acggcacagc taaagcagcg agcttggatt ttccctcttt
      661 tgaagagaga tccacatccg ccagcaaact gtcaaataag aaatcgctta atggcttggc
      721 attctgtgcc acgtactgct caaatccttc tttaccttga gaacgaacaa aggtgtccgg
      781 gtcttcgcca tcgggcaaga aaataaattt cagttggcga ccgtcttgca aataaggcaa
      841 cgcattttct aacgcccgcc aagctgcatc tcgaccggct ctatcgccat cataacaaca
      901 gacaatttgc tcggtgcaac gaaacatttg ctgaatttgt tcaccggtag ttgccgtgcc
      961 taaagaggcg actgcattgt ccacgccgaa ttgggcaagg gcgaccacgt ccatatagcc
     1021 ttccaccacg aacagataat ccggcgtttc attgactttc agtgcttgat acaagccata
     1081 taactcactg cctttatgat aaatcaccgt ttcgggcgag ttcatatatt tcgccccttg
     1141 ctcatcattc ggcaacaccc gcccaccaaa ggcaattacc cgtccacgct tatctcgaat
     1201 cggtaacatt acccgattgc gaaatttatc gtaaattcga ccgctatcat ttttggttaa
     1261 aacgcccgta tcgagcaatt tctgaatatc ttcttgtgat tgcccaaaag tgcgtagggc
     1321 tgcatcaaag gcattcggag caaaaccaat ttcaaagcgt tcgataatct cttcagacaa
     1381 acctcgttgc tgtaaatagc tttgtggctc aatctggtgc gataaattct gctggtagaa
     1441 cttcgccacc gcttccatca attcataaag attacgctta gttttaaaat tagcttgagg
     1501 cttgccgtca cgttgaatca cattctctct cggtacttcc agcccgtgca tagctgccag
     1561 ttcttcaatc gcttccggaa attcgagttt gtcataatcc atcaaaaagg tgatgacatt
     1621 gccgtgtacg ccacagccga aacaatggta aaactgtttt gattggctta ccgaaaagga
     1681 aggggttttc tcgtgatgaa aaggacagca ggcttgataa tctcgcccag cctttttgag
     1741 tttgacccga ctgttgatga cctcaacaat atcggtgcga gcgataagat catcaataaa
     1801 tgaacgtgga attgtgcctt tcattgattt cctcctgctc tttgaatgat acaagcggag
     1861 caattttgca aattttttgc aaaaaacaac cgcttgaaat agaaacgtta aaaacaccaa
     1921 aaccgtgagc ctaacggaat cacggtttcg atatagtttg ctaaccagcc taactaatta
     1981 gtataaacgt gtgttacgtg cgttctcacg gaaattacgt ttagcgtgac gtttagcaag
     2041 tgatgctttt tcacgtttac gaattgtagt tggtttttcg tagaattcac gagcacgaac
     2101 ttcagctaag atacccgctt tttcgcaaga gcgtttgaaa cgacgtaatg ctacgtcaaa
     2161 tgattcattt tcacgaactt taattactgg catatgccat cacctcagaa aaatatgatt
     2221 aaattaaacc gcacacaatt ttggcggcat agaacaaaaa aggtagtgca ttctacctta
     2281 agcactcaca taagtaaagt agtattgtgg cataaaaccg ccgtattatg ttgcattttt
     2341 ctacagttcg aataatttct cggtcgaaaa acttaatgcc ggaaagacca ccgaagttgc
     2401 cggttcatct tctgccaccg gctgaatacc gatatattta ccgttttcca acacaaaaat
     2461 ctgaatagtg cgggtttcgg gagaaacaat ccaatactct ttcacccctt gttcctggta
     2521 aagctcgtat ttatctttca tctccctttt ggtattaccc ggagaaagga tttccaccac
     2581 taaatccggt gcccctacac agcctctttc atctaactta ctgacatcac aaattacaca
     2641 aagatcaggc tgcactacag ttttgacttt tccgttttca tcgggaaacc gaacgtcaaa
     2701 aggcgcagaa taaatctggc attggtgatt gtcaaaaacc tctaaaaatt ttgctgtcat
     2761 cttcatagaa attcgctgat gaaaacgagt aggagccgga gacatcgcca caattttccc
     2821 tttgataatc tcaacccgct ctttaaattt ccatagcaaa taatcagcgt aactgtaact
     2881 tttttgtaag tccagttgat ttaagctggt aatttcgttc attggtaata agctcatacc
     2941 gcctccttta tcagaaatat aaagatatta tgccgaataa tccctcaaat tcaacaaaac
     3001 tttcgctaaa aagagataga taacctttat acccttagta taaaatgaca gcaattttca
     3061 ttgttttagg atatgtcgat gcaccttaac ttcaaaaaaa tagacaactc acatattgct
     3121 cttttctata atgtactagt cgccacattt tttgtcactg ttttaacctt taagaaaggt
     3181 tatagttatg tgccaatggc attaggtatt atcgctacac ttagtttctt attttatcgt
     3241 ttcaaattaa aacaaaagtg gttacttgat aaagaggata aattttttat tttctcgctt
     3301 attggctatt ttctaacgtt tgcaatgtct gctattttta atggcgatgg cattcgtgaa
     3361 attgataatc ctatccagat tttattgctt atccctttaa tcatcctctt tagactttac
     3421 ccgattaaaa aagaaactgt attgcacttt ataccgattg gagcgttggt agctggttgt
     3481 atagcaatat atcagaggtt tatattaaat cttaaatttc ctttccctga aataatgcgt
     3541 attcaatcgg ggaacatagc aatattatta tcactattta gtatagcaat tgccttttat
     3601 tggctttcaa aaaaaagaat taaaactggc attgcctacc tggtttttgc catgtttggg
     3661 ttatttgcca gtattctaac aggagcaaga ggcggctggc ttgcattcat tcccatttgc
     3721 ttttttatcc tatttttaaa tttaagacag ctaaataaga aagctatttt cctgattcta
     3781 ttagcactta tatcttcact ctcatttttt atctccaaac cagaatttgg catacaaaaa
     3841 cgatataatg cagctaagaa tgatattatc gtatttttag aaaaaggaaa tagacattca
     3901 tctctgggag ctcgttttga tatgtgggaa aatgcgctta tcggaatccg tgaaaaaccg
     3961 ctattaggac acggtagcac aggctatgaa acattcaaaa agaaacagat tgaaacaaaa
     4021 caaatggcaa aaacaacgct taggtttaat agcttacaca actaatacct agaagccttt
     4081 gtgaaaagag gtgtagttgg ttttatggcg ctaatggcta ttttaattat tccatttgtt
     4141 atttttgcca aacgattaaa ggcaaaaaat agagaggtaa aatgtatggc gatattaggc
     4201 attgtacata ttatttcgca ttcattcttt ttcctaagcc aatcattttt agcccataat
     4261 tcaggctcat tattctattt ctttgtgtta attttactct accatttagt caaacagaac
     4321 gaagagataa tatgataaaa caatagaaga aagttgggaa tataaccgag gtggtaactt
     4381 catcttctac cacaggataa atgtcgggat atttcctctt tttctgcttc ttactactaa
     4441 ttccgattag ccaaatacca ttccactgtt ttacgcaagc cactttcaaa agtttctttc
     4501 ggtttccagt cgagttcctt ttcgattttt gaagtatcaa ttgcatagcg gaaatcgtgg
     4561 ccagggcgat cttgcacata agtaattaaa tcagcatatt gtcctacaac aagcgggtta
     4621 tttggcacca tttcttgcaa aatagaacag atagaacgaa ccacttcgat attggttttt
     4681 tcattatgcc cgccaatatt gtaggtttct ccgatttgcc ctttttgcaa caccaaatag
     4741 agggcacgaa tatgatcttc cacaaacagc caatctctga cctgcaagcc gttgccgtaa
     4801 acaggtaggg atttaccttc taaggcattt aaaatcatta acggaataag tttttcggga
     4861 tattggtatg ccccataatt attggaacag ttggtgatga cagtcggtaa accgtaggtg
     4921 cgatgccaag cccgagccag atgatcgctg gcagctttag atgccgaata ggggctactt
     4981 ggattataag gggttttctc ggtaaataat tcctcgcttt tggctaaatc accatagacc
     5041 tcgtcggtcg agatatgtag aaagcgaaac gccgatttcc ttggctcagg taacgtgtcc
     5101 caataggctc tcgctgcctc taataaagta taagtgccga caatattggt ttgaataaaa
     5161 tctgctgccc cagaaataga gcgatcaaca tggctttccg ctgctaagtg cattaccaca
     5221 tcaggctgat atttgccaaa aatctcagaa atttgaccgc ttgcacaaat atctgctttt
     5281 tcaaaatggt agcgttcgtg atgtgcgaca ctctccaatg aggctaaatt tcccgcatag
     5341 gtgagcttat ccacattgat aactgtgtgt ggagtatgtt caatcagata gcgaactaat
     5401 gcagatccga taaaaccggc tccgccagtg atgaggatga tcataaaggt gaatatgaaa
     5461 tttgattcac gaaatttcgt ttgtatttaa tatggctttg aatattcttt tcagcgtctt
     5521 ttttatccca aatttgcaat tcccaaggat aataaaagtt acttgaattc ttaaaataaa
     5581 tatgaatacc cacatattca tctttatctc tcaaatacca attttttagt ccatattttt
     5641 cttgccaata atctaatgac tccattactt gctgaatcac ttcactagaa acaataatac
     5701 gagctccaaa aatatcgttg agaatgctat ttactggata accttcacta cgctgtttaa
     5761 aacgctcgat tttatctaaa atcgattctg aggtttttac tcggtaaaaa taagaaattc
     5821 cctctaaatc tgcacgatat aaataatcat taatagattc gtgtaaatta agacgataag
     5881 ctaaaatatg tggcgtaggc actttggcaa aagtatgctt aagattcact ttttcaatct
     5941 tacctgtttc aaagtagtct ttcgaaaaag ctaagtgcaa cttgttgatt tcatcaatga
     6001 gtttttctat tttctcaagc atgctattca ctctctaatt tattatcttg ccccaaatcc
     6061 agttagcatt gttttcaatg
//
LOCUS       DANLVT010000131         6024 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.131, whole genome shotgun sequence.
ACCESSION   DANLVT010000131 DANLVT010000000
VERSION     DANLVT010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6024)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6024)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6024
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.131"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            10..300
                     /locus_tag="PXC99_002195"
     CDS             10..300
                     /locus_tag="PXC99_002195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418607.1"
                     /translation="MEQLQAVSNEQVFAKLCEVERLLKTKGVNEHSRELWDLGDVAAY
                     FGYTKEHTSRSVVSSPHFPKPIALDGLRGKGRGAKKWVSGEVVKFCLMWKVK"
     gene            complement(570..752)
                     /locus_tag="PXC99_002196"
     CDS             complement(570..752)
                     /locus_tag="PXC99_002196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix protein, CopG family"
                     /protein_id="HDL5418608.1"
                     /translation="MAMSRNEIQAKSEAKRGIKQKSFKLPLEVIAEIEVLSQKLNIPQ
                     NQLIIQAIQQFKQNNP"
     gene            complement(1030..2028)
                     /locus_tag="PXC99_002197"
     CDS             complement(1030..2028)
                     /locus_tag="PXC99_002197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL5418609.1"
                     /translation="MATIIKNGNKYRAQVRKKGIYKTATFSTKTEANRWAYALEAQID
                     AGEYNTTPNILFAELIDKYLKEVTPTKRGKREERYRLLRIAGSNLGNIPLPALTKEHL
                     RQWQNQRLQEVQPVSVSRERATLSALFTKAMEWDYLKENPLKTLEKIKTPPARTRRYS
                     DEEIDKLIFVSGYSPNQPPLLMQQRAGAALLFAIETAMRAGEIAGLKWEHINLQARTA
                     FLPQTKNGYSRTVPLSTKAIAILNQLAQLEPNKQNSVFQLTSRSLDSNFRKLKQKANL
                     HNADLHFHDTRREALTRLSKYLTVMELAKVSGHRDLSILQNTYYNPDISELVSKLQ"
     gene            complement(2256..2332)
                     /locus_tag="PXC99_002198"
     tRNA            complement(2256..2332)
                     /locus_tag="PXC99_002198"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2296..2298),aa:Val,seq:gac)
     gene            complement(2396..3196)
                     /gene="apaH"
                     /locus_tag="PXC99_002199"
     CDS             complement(2396..3196)
                     /gene="apaH"
                     /locus_tag="PXC99_002199"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
                     ApaH"
                     /protein_id="HDL5418610.1"
                     /translation="MATYIVGDLHGCFNEFQLLLEKVNYNPKQDELFLTGDLVARGED
                     SLACLRFVKDSANNAKTVLGNHDLHLLGIKRVKPNDKIDAIFEAKDRLDLQNWLRNQP
                     LVIHHPKHQFLLTHAGISPEWDLATTLACAKEAEKVLQSDNYADYIAQMYENKPERWS
                     EDLQGVERWRYIINVFTRMRFCYTDKRLDFDCKLPLEQAPQELLAWFDLDNPLFTQKN
                     IIFGHWASLMGKCTRPNIYALDTGCAWGSHLTMLRWEDKQIFTQKRLK"
     gene            complement(3288..5264)
                     /locus_tag="PXC99_002200"
     CDS             complement(3288..5264)
                     /locus_tag="PXC99_002200"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exoribonuclease II"
                     /protein_id="HDL5418611.1"
                     /translation="MFQNNPLLAQLKQQIEASKEYVAGVVKASDKAFGFLECDKKSYF
                     IPPAEMKKVMHGDSVKAVVKRDGDKEQVEIDSLLEPMLDRFIAQVRLNKEGKLQLAVD
                     HPSIKQTIPANTHKKATEKLENGDWVVAQLKTHPLRDDRFFFAQVTQFICKESDNFAP
                     WWVTLARHEQPREPVANEKNYELHDELAREDLSHLYFTTIDSPSTQDMDDALFIEPIK
                     QNGKRTGWRLVVAIADPTAYIPENSHIEKAARQRCFTNYLPGFNIPMLPRELSDDLCS
                     LVPNEKRPALVGFIETDLNGNLIKETTFTSAWVESKDRLAYDDVSDYLEGVENAWQPQ
                     SEETKQQIEWLHQFTQARIQWRAENALLFKEQGDYTFELNEDGSVKDIHVEYRRIANQ
                     MIEESMILANICCAKFLSQHAKTGVFNTHSGFDPKNYELVKSFLLQTLASDENRDELA
                     ERYSAERLATLEGYCQMQRDIQDYPEKFLELRLRRYLTFAEFKAEVAPHFGLGITDYA
                     TWTSPIRKYGDMVNHRLIKQVLLGKQSQAVEESVLSRLQEARRQNRLVERDIADWLYA
                     RYLAPMVEQAVEFECEIADVSRGGLRAKVIKNGAQIFVPFSSLHDNKEEMEYRQEELA
                     LYIKGEKAYQIGQAVKVKLTEVRLETRSIVGNII"
     gene            5424..5702
                     /locus_tag="PXC99_002201"
     CDS             5424..5702
                     /locus_tag="PXC99_002201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000738492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bor family protein"
                     /protein_id="HDL5418612.1"
                     /translation="MKKLLAIATVFSLAACSTQTLELSPAKEAQYDRVQHFFVSGLAQ
                     KQEIDAAKICNGADKVGKVETETTFFNGLLGTITYGIYSPRQIRVYCN"
     gene            5727..6023
                     /locus_tag="PXC99_002202"
     CDS             5727..6023
                     /locus_tag="PXC99_002202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bor family protein"
                     /protein_id="HDL5418613.1"
                     /translation="MKKLLAMSVLTALLTTACTTQTAHIGGKVTDNIKPTKSVTQSFF
                     IGGIGQEETLNVVEVCGSKDKVQQVETVLSGGDILLGLVTIGIYTPRTANVYCK"
BASE COUNT         1638 a         1121 c         1325 g         1940 t
ORIGIN      
        1 gtggtaaaaa tggaacaatt acaagcggtc agtaatgagc aagtttttgc aaaactttgt
       61 gaggttgagc ggttattaaa aaccaaaggg gtgaatgagc atagccgtga attgtgggat
      121 ttgggcgatg tagcagcata tttcggctac actaaagaac acaccagccg aagtgttgta
      181 tctagtccac attttccgaa accgattgcc cttgacggct tacgaggcaa gggcaggggg
      241 gcgaagaagt gggtatccgg tgaagtggtg aaattttgtt tgatgtggaa ggtgaagtga
      301 tgataaaaaa gataatttta gatgcttgtt gcggtagccg aatgtttcac tttaataagc
      361 acaacccctc ggtattgttt gctgacaatc gggaatccct gtatcgaaaa ttttaaatgt
      421 tatcgaatac caacctatct atgggcataa aagcggtaaa cataacaaaa cgcattggct
      481 ggcatttgta aagatggata ataacgatta tttgtaaagt atttcaaaat acaaaagccg
      541 ataaatttca ttatttatcg gcttttgttt tatgggttgt tttgcttgaa ttgttgaata
      601 gcttgaataa tcagctggtt ttgtggaatg ttgagttttt ggctaagtac ttcgatttct
      661 gcgatcacct caagcggtag tttaaaggat ttttgcttta ttcctcgttt tgcctcgctt
      721 ttagcttgga tttcatttct tgacattgcc ataatttatc cctattataa attttgttga
      781 agagctggga gctttcaccc ccagcgagtt gcttcagatt agtaagctgg ggagctaagg
      841 actaataaga agacaactag gataatgtat ttaaacattg tgctatcctt cttcatttcg
      901 taaggtttaa gccttacgct cactttcaag ctgtctcttg aaagtgaggt tattataatg
      961 tagggtatcc tacattgcaa gtaataaata caaaaaagcc gataaatttt cgtttatcgg
     1021 cttttgtttt tattgcagtt tgctcacaag ttctgaaata tccgggttat agtaggtatt
     1081 ttgcaaaata cttaaatctc gatgccccga tactttggca agctccatta ccgtcagata
     1141 tttagacaaa cgtgtgagtg cctctcgccg tgtgtcgtga aaatgcagat cggcattgtg
     1201 tagattggct ttttgtttca gcttgcgaaa attcgaatca aggctgcgac tggtgagctg
     1261 gaaaacactg ttttgcttgt tcggttcaag ttgtgccaac tgatttaaaa ttgctattgc
     1321 tttggttgag agtggcacgg tgcgtgaata accgtttttg gtttgtggca aaaatgcggt
     1381 gcgtgcctgc aggtttatat gttcccattt taaaccagca atttcacccg ctcgcattgc
     1441 agtctcaatc gcaaataata gtgctgctcc ggctctttgt tgcattaata gcggtggctg
     1501 gttagggctg tagccggaga caaaaatcag tttgtctatc tcctcatcgc tatatcggcg
     1561 agttcttgct ggtggcgttt tgattttttc cagcgttttt agaggatttt ctttgagata
     1621 atcccattcc attgcttttg taaagagtgc cgataaagtg gctctttctc ttgagacgga
     1681 aaccggctgc acttcttgca agcgttggtt ttgccattgg cgtaaatgct ctttggtgag
     1741 tgccggtaat ggtatatttc ccaagttgct gccggcaatt cttagcaggc gatagcgttc
     1801 ttcccttttg ccacgtttgg tcggagtgac ctctttgagg tatttgtcga ttaattcggc
     1861 aaaaagaatg ttcggggtgg tgttatattc tccggcatca atttgagcct ctaaagcgta
     1921 agcccagcgg tttgcctctg ttttggtgct gaaagtggca gttttataaa tgcctttttt
     1981 gcggacttgt gctcggtatt tgttgccgtt cttaataata gtagccattt ttttattcct
     2041 ttgtgtatgt gtgcagttta agtgtgcaaa tgtgtgcaaa ggaatgttaa tagagatcat
     2101 aaacgatcaa taaatatcaa gttttcatat caaaaatgat gtttttattg atgttatgct
     2161 acacttgggg aagtgtttta aatcaataag ctattgattt ataaggggta tttttggggt
     2221 taagcctgaa tggggatatt caggcttaaa aataatggtg cgactagctg gactcgaacc
     2281 agtgaccccc accatgtcaa ggtggtgctc taaccaactg agctatagtc gcattaacgg
     2341 tgtgcattct attggaaaaa ggaacttagt gcaatatgct tttggtcgaa tgcttttatt
     2401 ttagacgctt ttgggtaaaa atttgtttat cttcccaacg gagcatggtt aaatggcttc
     2461 cccaagcaca gccggtatca agtgcataga tgtttggacg agtgcatttg cccattaggc
     2521 ttgcccagtg accaaagata atgtttttct gtgtaaataa cggattatct aagtcaaacc
     2581 aagccagcag ttcttgaggg gcttgttcaa gcggtaattt acagtcaaaa tctaaccgct
     2641 tgtcggtgta gcaaaaccgc atacgggtaa acacattgat gatataacgc caacgttcaa
     2701 caccttgcaa atcttcactc cagcgttcgg gcttattctc atacatttgg gcgatgtagt
     2761 ccgcataatt gtcactttgt agcacctttt ctgcctcttt ggcacaagct agggtagttg
     2821 ctaaatccca ctcagggctg attcctgcgt gagtcagcaa aaattgatgt ttggggtgat
     2881 gaattacaag cggttgattt ctgagccaat tttgcaaatc gagccgatct ttagcctcaa
     2941 aaatagcatc aatcttatca tttggtttta cccgtttgat gccaagcaag tgcaaatcgt
     3001 ggttgcctag cacggttttg gcattgtttg cagagtcttt cacaaaacgt aaacaggcta
     3061 aagagtcctc accacgggcg actaaatccc ctgttaaaaa gagttcgtct tgcttggggt
     3121 tataattgac tttttctaat aaaagctgaa attcgttaaa gcaaccgtgt aggtcgccta
     3181 caatataagt tgccattgtt tctcctttgt tcccctaaag ttataaacaa gcggttatat
     3241 tttagagaaa atttgcaaaa tctcatcaaa atataaccgc ttgaaattta aatgatattt
     3301 cctacgattg agcgggtttc taagcgtact tcggtgagtt tcactttcac cgcttgcccg
     3361 atctgatagg ctttttcacc tttaatataa agtgcaagtt cttcttggcg gtattccatt
     3421 tcctctttgt tgtcgtgcaa gctggagaat ggcacaaaaa tttgagcacc gttttttatg
     3481 actttcgcac gcaagccacc acgggaaaca tctgcaattt cgcactcaaa ttcgaccgct
     3541 tgttccacca ttggggcaag gtaacgagca taaagccagt cagcaatatc acgttctact
     3601 aaacggtttt gacggcgagc ttcttgtaaa cggcttaaaa ctgattcttc caccgcttgg
     3661 ctttgtttgc caagtaacac ttgcttgatt aaacggtggt ttaccatatc gccatattta
     3721 cggatgggtg atgtccaagt ggcgtaatcg gtaatgccta gtccgaaatg cggggcaact
     3781 tcggctttaa attcagcgaa ggttaaataa cgtcgtaaac gcaactctaa gaatttctct
     3841 gggtagtctt gaatatcacg ttgcatttgg caatagcctt ctaaggttgc taaacgctcg
     3901 gcggagtagc gttcggcaag ctcatcacga ttttcatcgc tggctaaagt ttggagtaaa
     3961 aatgatttta ccaattcata atttttcgga tcaaaacctg aatgggtatt aaatacaccg
     4021 gttttggcat gttggcttaa gaattttgca caacaaatat tggcaagaat cattgattct
     4081 tcgatcattt gattcgcaat acggcgatat tcaacgtgaa tatcttttac cgagccatct
     4141 tcatttaact caaaggtata atcgccttgt tctttgaata gcaacgcatt ctcggcacgc
     4201 cattgaatgc gggcttgagt aaattgatgt agccactcaa tttgttgttt tgtttcttca
     4261 gactgaggtt gccacgcatt ttccacgcct tcgagataat cggaaacatc gtcgtaagcc
     4321 aagcgatctt ttgattcgac ccaagcagag gtaaaggttg tctctttaat gagattgccg
     4381 tttaaatcgg tttcaataaa gccaacgagg gcagggcgtt tttcattcgg gacaagcgaa
     4441 cagagatcgt ctgagagttc tcgaggtaac attggaatgt taaagcccgg caaatagttg
     4501 gtgaaacaac gctggcgagc ggctttttca atatgggaat tttctgggat ataagcggtt
     4561 gggtcagcaa tcgctaccac taaacgccag ccggttcgct tgccattttg cttaattggt
     4621 tcgatgaaca gagcatcgtc catatcttgc gtgcttgggc tgtcaatagt ggtaaagtaa
     4681 agatgagata aatcttcacg agctaattca tcgtgtaatt catagttttt ttcatttgcg
     4741 accggttcac gaggctgttc gtggcgggca agtgtgaccc accaaggggc aaaattatca
     4801 gattctttac agataaattg ggtaacttga gcaaagaaaa aacggtcgtc acgcaatggg
     4861 tgcgttttta attgtgcaac cacccagtcg ccattttcta atttttcagt ggctttttta
     4921 tgggtatttg ccgggatagt ttgcttaatg cttgggtgat caaccgcaag ttgcaatttg
     4981 ccctctttat tcaagcgaac ttgggcaata aatctatcca gcattggctc aagtagtgaa
     5041 tcaatttcta cctgttcttt gtcgccatca cgtttgacta cggctttcac tgaatcaccg
     5101 tgcattactt ttttcatttc cgcaggtgga ataaaatagc tttttttatc gcattctaaa
     5161 aaaccgaatg ctttgtctga ggctttgaca acgcctgcga catattcttt gcttgcttca
     5221 atttgttgtt tgagttgggc taaaagggga ttgttttgaa acataatttc tcattttaaa
     5281 aataaaaaaa ggtgctatcg ttgcaccgaa aaaaacaatg gcattataac ggatttgaac
     5341 caagttcagc aaataaatgc tgttgctata acttataaag gttggtagaa tataatccat
     5401 ttaaaaataa tggagacttt tcaatgaaaa aattacttgc aattgcaaca gtattttctt
     5461 tagcagcctg ttctactcaa acacttgaac tatctcctgc taaggaagct caatatgatc
     5521 gtgttcaaca cttctttgtt tcagggcttg ctcaaaaaca agagatagat gcagcaaaaa
     5581 tttgtaatgg tgcagataag gtaggtaagg tagaaactga aactactttc tttaatggct
     5641 tgttaggtac aattacttat ggtatctatt cacctcgcca aatccgtgta tattgtaact
     5701 aatcctagta atttaaggag ttgaaaatga aaaaattgct tgctatgtct gtattaacag
     5761 ccctgctgac tacagcatgt acaacacaaa ctgcccatat tggcggcaaa gttactgata
     5821 atattaaacc aactaagagt gtaactcagt cgttctttat aggtgggatt gggcaagaag
     5881 aaacattgaa tgttgtagag gtttgtggtt ccaaagataa agtgcagcag gttgaaacag
     5941 tactttcagg tggggacatt ctattaggtc ttgtgactat cggtatttat acacctcgta
     6001 ctgcaaatgt atattgtaag taat
//
LOCUS       DANLVT010000132         6010 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.132, whole genome shotgun sequence.
ACCESSION   DANLVT010000132 DANLVT010000000
VERSION     DANLVT010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6010)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6010)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6010
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.132"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..564)
                     /locus_tag="PXC99_002203"
     CDS             complement(<1..564)
                     /locus_tag="PXC99_002203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N-acetylneuraminate-beta-galactosamide-
                     alpha-2, 3-sialyltransferase"
                     /protein_id="HDL5418614.1"
                     /translation="MNLIICCTPLQVLIAEKIIEMHPNERFYGVMLSTVKNAKFDFYQ
                     ARLAQKCEQFFAMQQHSERIQLLKEIIYLKRTFGGKKFNKVFLANINELEIQFLLSAI
                     SFQELNTFDDGTANIVQNSIFYQAENIGLNRKLINFFLGNKYSLEKLKQRSKTHYTIY
                     KNFPNIIENTVYIDLINQVESVGTAPSN"
     gene            complement(561..1766)
                     /locus_tag="PXC99_002204"
     CDS             complement(561..1766)
                     /locus_tag="PXC99_002204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flippase"
                     /protein_id="HDL5418615.1"
                     /translation="MKAVKDSVIYLIGELASKSIPFLLLPYFSRKLGVAGYGELSYYQ
                     TFAALFVIFIGLSQDGAVARYFYFYGKRSLNLVLSTGYLYTLCATLLILLGCWYFQSE
                     IIAYVAIGAMFQSFLNVQLSVRQCQKQALAYTTIQLMSAIFSAVITVAMMEYFKTDLV
                     EKRILAILMSNGLVFLIAYFLYAKRAKTKKFSLARHKTALLYLFGFGIPLILHHSSIF
                     LKGQLDRVFIYHKFSEEDLGLYAMGAQIAMILAIVVQALNKATLPYFYEALKQKKINV
                     SHIHKWALYALFIVPLPAIVMWFIPEELVVWILGSQFVGTKYYIILFLIATMLVVPYL
                     ILVNYLFFYGKNKLISLCSILSTIFYLVALFALTFSKIEYIPFASIIGAISIIPILYI
                     MTAKVGKTV"
     gene            complement(1776..2960)
                     /gene="neuC"
                     /locus_tag="PXC99_002205"
     CDS             complement(1776..2960)
                     /gene="neuC"
                     /locus_tag="PXC99_002205"
                     /EC_number="3.2.1.183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HDL5418616.1"
                     /translation="MKNIAYITGSRAEYGIVKRLLQKLAQDPTVNFSLVVTAMHLDPQ
                     YGNTVTVIEQDGFEIAARIPLTLNSENNQTIIHSMAECLDRFGEHFQQHRYDAVIVLG
                     DRYEMLAVATAAAMHNIPLIHLHGGEQTLGNYDEFIRHCITKMSKLHLTSTEEYRQRV
                     IQMGELPENVVNTGSLGAENSLDLVLPTQAELVERLGIPASPYFLVVFHPETLTDVSV
                     LEQIEALLNAFEQFKDKYQFVFIGSNSDTNSEQIYARFKAYTDENQFKFFTSVKPEEY
                     LALIKYSNGLIGNSSSGLIEAPSCGVGTLNIGNRQQGRVRDESVIDVESNEQAIIDGI
                     EKLISADFQHRLPSMKNPYFQDNAMEKAYNAIKIFLADSHHTQPKGFYDVAFSQAVKK
                     SE"
     gene            complement(2961..4220)
                     /locus_tag="PXC99_002206"
     CDS             complement(2961..4220)
                     /locus_tag="PXC99_002206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase"
                     /protein_id="HDL5418617.1"
                     /translation="MKKIAIITARAGSKGLPNKNVLLANGKPLMAYSIEAAIESGQFE
                     KIIVSTDSQEYIDLFSHYPIEFIKRAEHLASDKASSFVVIEDVLNQYRSVEFDYFMLL
                     QPTSPLRSGEHIKESCEKFEKNFEQFDFLVSVSDAHKPTTLTRMIEEDECLKHFQLDY
                     SNYARQLHHPEYSPNGAIFTAKPEAYLKQKHFYGAKCLAYFMDKDVSIDIDDRQDFEY
                     FYFILQQRNKEKILLETIKRSILMKKENFKEVKEIALIGHSIIEYWDIEHLNGKAVNN
                     LGIAGISTKQYSDLILDEGLISALPKDIILMFGTNDIVYAGWSDEKILADINHLIAQL
                     TAIRGDINLYFLEITPTAFRVDRNNNDIRLLNQYLKDNLAVKWISLDQAFSDKYGKLD
                     LSYSDDGLHLNAKGYEKLTAILEKELN"
     gene            complement(4280..5317)
                     /gene="neuB"
                     /locus_tag="PXC99_002207"
     CDS             complement(4280..5317)
                     /gene="neuB"
                     /locus_tag="PXC99_002207"
                     /EC_number="2.5.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate synthase"
                     /protein_id="HDL5418618.1"
                     /translation="MVNVFIVAEIGCNHNGDPALAKKMVDVAKECGVDAVKFQTFKAD
                     KLISKYAPKAEYQKVTTGTADSQLEMTRKLELPYEEFVKLEAYARSLGLEVFSTPFDF
                     ESIDFLASQQQKVWKIPSGELTNLPYLEKIARLPIEGKTIVISTGMATIEETKASLKV
                     LEDNGVAKKDITILHCNTEYPTPYEDVNLNAFHQLKQEFGDYSLGFSDHSAGYFAGLA
                     AVPYGITFIEKHFTLDKNFEGPDHKASVTPEELKLLCEGIRAVEKSLGSSEKLVTNSE
                     AKNKIVARKSIIAARPIKKGEIFTTENITTKRPGNGISPMFWYDVLGKEAQQDFEEDQ
                     LIQDSRFENQM"
     gene            complement(5317..5961)
                     /locus_tag="PXC99_002208"
     CDS             complement(5317..5961)
                     /locus_tag="PXC99_002208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HDL5418619.1"
                     /translation="MQQKSKREKLILIGAGGYAKSVLDSLDHEQYEFCGLIDNFKPEG
                     SVHLGYPILASTIDCFSKRDNYHYFICIGNNSYRLEKFSKLQKYKCRIINVVDKTALV
                     SKNSTLGIGVFVGKMAIVNSGVTVGDNVIINTKSLVEHGCFIGSHCNISTNTTLNGDV
                     IVEDHAFIGSSSVVNGQLRVGESALVGSGAVVIRNVEPRTVVAGVPAKYIKDIK"
BASE COUNT         1909 a         1223 c          982 g         1896 t
ORIGIN      
        1 gttagatggt gctgtaccca ctgattcaac ctgattaatg agatcaatat aaaccgtatt
       61 ttcaataata ttcggaaaat ttttgtaaat tgtataatga gttttagagc gttgtttcag
      121 cttttctagg ctatatttat tacctaaaaa aaagttaatc aattttcgat ttaacccaat
      181 attttcagct tgatagaaaa tactgttttg tacaatatta gctgtgccat catcaaaggt
      241 attgagttct tgaaatgaaa tggcacttaa cagaaattga atttctaact cattgatatt
      301 tgctaaaaag actttattaa acttcttacc gccaaaagta cgttttaaat aaataatttc
      361 ttttaataat tgaatacgct cgctatgttg ttgcatcgca aaaaattgtt cgcacttttg
      421 ggctaatcta gcttggtaaa aatcaaattt cgcgtttttt accgtagaaa gcatcacccc
      481 atagaatcgc tcattagggt gcatttcaat gattttttca gcaatcaaca cttgcaaggg
      541 cgtgcaacaa ataattaaat tcatacggtt tttcctactt ttgccgtcat tatataaaga
      601 atcggaataa tgctgattgc accaatgatg ctggcaaaag gaatatattc aattttagaa
      661 aaagttaaag caaatagtgc aactaaataa aaaatagtag ataaaatcga gcaaagcgaa
      721 attagcttat ttttgccata aaaaaacaaa taattgacta aaatgaggta aggcacaacc
      781 aacattgtcg caattaaaaa gagaataatg tagtattttg ttcctacaaa ttggctaccc
      841 agaatccata ccactaattc ttccggaata aaccacatca caatagcagg taatggtaca
      901 ataaataagg catacaacgc ccatttgtgg atatggctga cattaatttt tttctgcttt
      961 aaggcttcat aaaaataagg cagtgttgct ttatttaagg cttgaaccac aatggctaga
     1021 atcatcgcaa tttgagcccc cattgcatat aaacctaaat cctcttcgct aaatttatgg
     1081 taaataaata ctctgtctaa ctgtcctttt aagaaaatac tggaatggtg caaaatcaac
     1141 ggaataccaa agccgaataa atacaataaa gcagttttat ggcgggcaag gctaaatttc
     1201 ttcgtttttg ctcttttagc atacaaaaag taagcgatta gaaagactaa gccattactc
     1261 atcaaaatcg ctaaaatccg cttttccact aaatcggtct taaaatactc catcattgca
     1321 acggtaataa ctgccgaaaa aatcgccgac attaattgaa tcgttgtata agcaagtgcc
     1381 tgtttttgac actgccttac actaagctgt acattcaaaa acgactggaa catcgcccca
     1441 atcgctacat aagcaataat ttcagactgg aaataccagc aacccaacag gataagcaaa
     1501 gttgcacaaa gagtatataa ataccctgta ctcaagacta aatttagtga acgcttacca
     1561 taaaaataga aatagcgagc aaccgcaccg tcttggctaa gcccgataaa aattacaaat
     1621 aaagcagcaa aggtttggta gtaggaaagc tccccataac ctgccacgcc gagtttgcgt
     1681 gaaaagtagg gtaagagcaa gaaaggaatt gactttgacg ccaattcccc aattaaataa
     1741 atcacactgt ctttaactgc tttcatagtt gcaaattatt ctgatttttt gaccgcttgc
     1801 gagaaagcaa catcataaaa tcctttcggt tgagtatggt ggctgtctgc taagaatatt
     1861 ttgattgcat tgtaagcctt ttccatcgcg ttgtcttgaa aatatggatt tttcatactc
     1921 ggtaaacggt gttggaaatc ggctgaaatc aatttttcga taccatctat gatagcctgt
     1981 tcattactct ctacatcaat tacgctctca tcccgtactc gcccttgctg gcgattaccg
     2041 atatttagcg taccaacacc acaactcggt gcttcaatca agcctgatga gctattacca
     2101 atcaacccat ttgaatattt aatcaacgct aaatactctt ccggtttgac tgaggtgaaa
     2161 aacttaaatt gattttcatc ggtgtaagcc ttaaaacgtg cataaatttg ctctgaattg
     2221 gtgtctgaat ttgagccgat aaagacgaat tggtatttgt ctttaaactg ctcaaaagca
     2281 ttgagtaacg cctcaatttg ctccaacacg gaaacatcgg ttaaggtttc cgggtggaag
     2341 accactaaaa aataaggcga tgccggaatc cctaatctct cgactaattc tgcttgggtc
     2401 ggcaacacta aatccaaact attctccgcc cctagagaac cagtattcac cacattttcg
     2461 ggcagctcgc ccatttgaat cacacgctgt ctatattctt cagttgaagt taaatgcaat
     2521 ttcgacattt tggtaataca atggcgaata aattcatcgt aattacctaa tgtttgctca
     2581 ccaccgtgca gatgaatcag cggaatatta tgcatcgccg cagccgttgc caccgccaac
     2641 atctcgtaac gatcgcctag cacaatcacc gcatcataac gatgttgctg gaaatgttcg
     2701 ccaaatcgat ctaaacactc tgccattgaa tgaataatgg tctgattatt ttcactgttt
     2761 aaggtaagcg gaatacgagc tgcaatctca aagccatctt gctcaatgac cgtcaccgta
     2821 ttgccatatt gcggatccaa atgcatcgca gtaacaacca gagagaaatt cacagtcgga
     2881 tcttgtgcta atttttgtaa taaacgcttt acaatcccgt attcggcacg agatccggta
     2941 atataggcaa tatttttcat ttagttgagc tctttttcca aaatagcggt taatttttca
     3001 taaccttttg catttaaatg taatccgtca tcgctatagc ttaaatccaa tttgccatat
     3061 ttatcgctaa atgcctgatc taagctaatc catttcaccg ctaaattatc tttaagatat
     3121 tgatttaaca agcgaatatc gttgttatta cgatcgactc taaatgcagt tggggtaatt
     3181 tccaagaaat agagattaat atctccacga attgctgtta attgtgcaat taaatgatta
     3241 atatctgcta gaattttttc atcactccag ccagcatata caatatcatt agtaccgaac
     3301 attaaaataa tgtctttagg taaagcagaa attaaacctt catccaaaat cagatcactg
     3361 tattgttttg ttgaaatacc tgcaattcct aaattattaa ctgccttacc gtttaaatgt
     3421 tcaatatccc aatattcaat gatcgaatgc ccgattaagg ctatctcttt cacttcttta
     3481 aagttctctt ttttcattaa aatcgaacgt ttaatggttt caagtaagat tttttcttta
     3541 ttgcgttgtt gcagaataaa gtagaagtac tcgaaatctt ggcgatcatc aatatcaata
     3601 gaaacgtctt tatccataaa ataggctaga catttcgcac catagaagtg tttttgttta
     3661 agataggctt ctggcttagc tgtaaaaata gctccattcg gtgaatattc aggatgatgc
     3721 aattggcgtg catagttaga ataatccaac tgaaaatgct ttaggcactc gtcttcctca
     3781 atcatacgag tcaatgtcgt aggtttatgg gcatcagaaa cagatactaa gaaatcaaat
     3841 tgttcgaaat ttttctcaaa tttttcacac gattccttaa tatgctctcc tgatctcaac
     3901 ggcgaagttg gttgaagtag cataaaatag tcaaactcta ctgatctata ttgatttaac
     3961 acatcttcaa tcacgacaaa agaactcgcc ttatcactgg ctaaatgctc ggcacgttta
     4021 ataaattcaa ttggataatg tgagaacaaa tcaatgtatt cttgggaatc agtactaacg
     4081 ataattttct caaattgccc cgactcaatc gcagcttcaa tagaataggc cattaacggc
     4141 ttaccgttgg ctaataatac atttttattc ggcaagcctt ttgaaccggc tcgggctgta
     4201 ataattgcaa tttttttcat aaatttgacc gcttgttaaa cacaaaatga tggagctttc
     4261 atcccatcac tatattatat tacatctgat tttcaaaacg agaatcttga attaattgat
     4321 cttcttcaaa atcctgttgt gcttctttac ctagcacatc ataccaaaac atcgggctaa
     4381 tgccattacc ggggcgttta gtcgtaatat tttcggttgt aaaaatttcg ccttttttaa
     4441 ttggacgtgc cgcaataatt gattttcttg ccacaatttt attttttgct tccgaattag
     4501 tgactaattt ctcggaagaa cccagcgatt tttccaccgc acgaatgcct tcacacagta
     4561 atttcagctc ttcaggtgta accgaagctt tatgatccgg accttcaaag tttttatcta
     4621 aggtaaaatg tttttcaatg aaggtaatgc cgtaaggtac tgccgccaac cctgcaaaat
     4681 aaccggcaga gtggtcagaa aaacctaaac tatagtcgcc aaactcctgt tttagctgat
     4741 ggaacgcatt taaattcaca tcttcataag gtgtcgggta ctcggtatta caatgtaaaa
     4801 tcgtaatatc ttttttcgct acaccgttat cttccaatac ttttaatgag gcttttgttt
     4861 cttcaatggt tgccataccg gtagaaataa cgatcgtctt gccttcaatc ggaagtcgtg
     4921 caattttttc taaatacggc aaattggtta attcaccaga cggaattttc cacacttttt
     4981 gttgttggct tgccaagaaa tcaatcgact cgaaatcgaa tggcgtagag aatacctcta
     5041 accccaatga acgagcgtaa gcctctaatt tcacaaactc ctcataaggt aactctaatt
     5101 tgcgggtcat ttctaattgg gaatcagcgg tgccggtcgt tactttttga tactcggctt
     5161 taggggcata tttagagatc aacttatccg ctttaaaggt ttggaatttc accgcatcga
     5221 caccacactc tttcgctaca tcaaccattt tctttgctaa cgcaggatcg ccgttatggt
     5281 tacaaccgat ttctgccaca ataaatacat ttaccattat tttatatcct taatatattt
     5341 tgctggaacg cctgctacaa ctgtgcgagg ctccacattt ctaattacca ctgcaccgga
     5401 gccaaccaat gcactttcac ccactcttag ctgtccgttc acaacagagg aactaccaat
     5461 aaaagcatga tcttcgacaa ttacatcgcc atttagtgtc gtattggttg aaatattgca
     5521 atgactgccg ataaaacaac catgctcaac cagcgattta gtgttaatga tcacattatc
     5581 gcctacagtt acgccactgt ttacaattgc catttttcca acaaacactc caatgcctag
     5641 agtggaattt ttggacacca atgcggtttt atctaccaca ttaattattc tacacttata
     5701 tttttgtagc ttagagaatt tttctaaacg gtaactatta tttccaatac aaataaaata
     5761 gtgataatta tctcgtttag aaaaacaatc aattgttgaa gctagaatag gataacctaa
     5821 gtgcacacta ccttcaggct taaagttatc gataagtcca caaaattcat attgttcgtg
     5881 atcaagtgaa tctaacactg atttggcata gccaccggca ccgatcaaaa tcaatttttc
     5941 tcttttagac ttttgttgca ttgctatcac ccatgatgaa tttcaattca tatggagtat
     6001 tctaatactt
//
LOCUS       DANLVT010000133         5886 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.133, whole genome shotgun sequence.
ACCESSION   DANLVT010000133 DANLVT010000000
VERSION     DANLVT010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5886)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5886)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5886
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.133"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            127..1245
                     /gene="malK"
                     /locus_tag="PXC99_002209"
     CDS             127..1245
                     /gene="malK"
                     /locus_tag="PXC99_002209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005552148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose/maltodextrin ABC transporter ATP-binding
                     protein MalK"
                     /protein_id="HDL5418620.1"
                     /translation="MANVSLRNVGKSYGDVHISKDINLEINEGEFVVFVGPSGCGKST
                     LLRMIAGLEDITTGELYIGGKLMNEVEPSKRGIGMVFQSYALYPHLDVAENMSFGLKL
                     AGVSKAERDQRVNQVAEILQLAHLLDRKPKALSGGQRQRVAIGRTLVSQPEVFLLDEP
                     LSNLDAALRVQMRVEISKLHKKLNRTMIYVTHDQVEAMTLADKIVVLNAGGIAQVGKP
                     LELYHYPANRFVAGFIGSPKMNFLPVKVIAVEPERVKIELPDANHHNFWIPVSGEGVN
                     VGDNLSLGIRPEHLVPSDQTQVTLHGIVQVVELLGNETQIHLEIPEIKQPTLIYRQND
                     VVLVNEGDDLNIGILPERCHLFKEDGTACKRLFVEKGV"
     gene            1343..2632
                     /locus_tag="PXC99_002210"
     CDS             1343..2632
                     /locus_tag="PXC99_002210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltoporin"
                     /protein_id="HDL5418621.1"
                     /translation="MKKTVLAVAISGAMFAASASAVDFHGYARSGIGWTSGGGEQSAF
                     TVNGGGSKYRLGNESDTYAELKLGQELFKSGEKSIYFDTNLAYGGTLHNNDWTPTSPA
                     LRELNVQFKNFADSLPGATLWAGKRFYQRHDVHMNDFYYWDISGPGAGVENIDLGFGK
                     LSLAVTRDTERGGANTFGYTTVYKLDPSTGKIKLDKQRNKADVYNDIFDVRLAGIELW
                     KDGSLELGFDYGNAHAKKGAALEKGATKNGYMVTAEYTQGNFFGGFNKFTAQYATDSM
                     TSWNNGHAQGSKADNKGNMLRLINQGVVQASDKVEVMYALIYEKTKLDNKQGKTWYSA
                     GIRPMYKWNDTMSTLLEVGYDRIKDQATGKKNDLVKYTVAQQWQAGNSIWARPAIRVF
                     GTYARWNDKFNTKARTDAGYKAKDGEFITGVQFEAWW"
     gene            2713..3609
                     /gene="malM"
                     /locus_tag="PXC99_002211"
     CDS             2713..3609
                     /gene="malM"
                     /locus_tag="PXC99_002211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose operon protein MalM"
                     /protein_id="HDL5418622.1"
                     /translation="MKKTLLSTAIFFAHLLVVSPSIANGSAGKSIHINSAELAQIQWQ
                     DVPFSQTVKTDLSEQHKQAFTTAFAGIASPVAAYRIPANQGTLEIEIESPVMDKNVFV
                     PTAVVLDSQFNVASTYPSSEFKLLEERGLKGSRLGAELNLTPAMNQDYIYLLIYTTQQ
                     DLAKTTMMPHPAKTYAKATGKQPPAINDIEVAHSLKGQIHINVTGSNGTKFIGLPTEI
                     FSSNKAATPAAKTAIPLPIKENPVAVKTAVDKDTEAYFNQAVMKAIKAKDINKAMNLV
                     NEAEKLGLTSPRQIFLKNVSSN"
     gene            complement(3769..5637)
                     /locus_tag="PXC99_002212"
     CDS             complement(3769..5637)
                     /locus_tag="PXC99_002212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HDL5418623.1"
                     /translation="MSGLVSPELIKTVALLATSVTIVPLFKRLGLGSVLGYLVAGCLI
                     GPSGIGLFQDPAAVVHMAELGVVMFLFIIGLEMHPELLWAMRKAIFGRGFLQVAICGT
                     LLTLAGIYLLGFSKEVAFIAGMGFTLSSTAIVMQVLEDKGISSTPKGQRIVATLLFED
                     LAIVPLLASVAFLAPNQVDAESSTNWSAIGLSLVAVLILVASGKWLMNPIFRVISKAK
                     VREMMTAAALLVVLGSALLMEISGLSMAMGAFLAGVMLSESSFRHQLEADIEPFRGLL
                     LGLFFMGVGMSLDLSLVLNNWLWLLVIVAVYVIGKGLGIFIAASITRLTLNESIVRTT
                     IMAHGGEFAFVLFSAAATAGILTPDTHATLTAAVIVSMLLSPLLILIKQGVRKKKAKN
                     ESTNMTGVELPEDLEANVLVIGFGRFNQIVCQALLAKGLSVSVIDSNTDHIRAAARFG
                     FKLYYGDGARLDVLRASGIANANCVIVGVGNPERTEKIVELIKSEYPLVPVFARTYDR
                     QSAVDLVKKHHVDYHIRETFESALALSQAAIERLGSSEEEAKQIISYVRRLDAERFNE
                     ELLHGFSAEVIRKYWVPTPWVNPQHEGSALNEETADILEELGETVEVIKVDITDKN"
     gene            complement(5668..>5886)
                     /locus_tag="PXC99_002213"
     CDS             complement(5668..>5886)
                     /locus_tag="PXC99_002213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate cyclase"
                     /protein_id="HDL5418624.1"
                     /translation="VESYYNCFGNKEEKIRKINKLQNEKQLKTETPASFGSFNHPQFY
                     QLISPNGELCIVPFQSRQHLDYLAQKHH"
BASE COUNT         1868 a         1150 c         1224 g         1644 t
ORIGIN      
        1 ctttagataa aaaggcgact attcagccta aaaaaaagta ttttaggatg atttcttctt
       61 tagataaaaa ggcgactatt cagcctaaat aaaaccaaca agcaaaagca gaaaagaggt
      121 ttagttatgg cgaatgtatc attacgtaac gtgggaaaat cgtatggtga tgttcatatc
      181 tctaaggata ttaatttaga aattaacgaa ggagaattcg ttgttttcgt tggaccgtca
      241 ggttgtggca aatctacgct attacgaatg atagcaggtt tggaagatat tacgacagga
      301 gaactctata tcggtggaaa actgatgaat gaagtagagc cttcaaaacg tggtatcggt
      361 atggtgttcc aatcctatgc tctctatcca catttagacg ttgccgaaaa tatgtctttt
      421 ggcttaaagc tggcaggtgt aagtaaagca gagcgggatc aacgagttaa ccaagttgcc
      481 gaaatcttac agcttgccca tttattagat cgaaaaccta aagcactttc cggcggacaa
      541 cgccaacggg tggctattgg tagaacactg gtttcccaac cggaagtatt tttactcgat
      601 gaaccacttt ccaaccttga tgccgcattg cgtgtacaaa tgcgggtaga aatttccaaa
      661 ttacataaaa aactaaaccg cacaatgatt tatgttacgc acgatcaagt tgaagcaatg
      721 acattagcgg acaaaatcgt ggtattaaat gccggcggta ttgctcaagt aggtaaaccg
      781 ttagaacttt atcattaccc ggcaaatcgc tttgtagcag ggtttatcgg ctcgcctaaa
      841 atgaactttt taccggtaaa agtgattgcg gtagagccgg aacgggtaaa aattgagtta
      901 cctgatgcga atcatcataa tttttggatt ccggtttccg gcgaaggggt gaatgtggga
      961 gataacttat ctttaggtat ccgcccggaa catttagttc cttcggatca aacccaagtg
     1021 accttacacg gtattgtgca agttgtggaa ttgctcggaa atgaaacaca aatccacctt
     1081 gaaatccctg aaatcaaaca accaacctta atttatcgtc aaaacgatgt ggtattagtt
     1141 aatgaaggcg acgatctgaa tatcggtata ttgccggaac gctgccattt atttaaggaa
     1201 gacggtacag cttgcaaacg tttgtttgtt gaaaaagggg tataacaatt tcagtttatt
     1261 actgatttta gagggtattt tcaatcttct aatcaattaa taattaacct aagtaaaatc
     1321 aaatcttaag agaggttcta ttatgaaaaa aacagtccta gcagttgcaa tcagtggtgc
     1381 aatgttcgca gccagtgcat cagcggttga tttccacgga tatgcacgtt caggtatcgg
     1441 ttggacatcg gggggggggg agcaatccgc attcacggta aatggtggtg gttcaaaata
     1501 ccgtttaggt aacgaatctg atacctatgc agaattgaaa ttaggtcagg aattattcaa
     1561 aagtggtgag aaatctatct actttgatac aaaccttgct tacggcggta cgcttcacaa
     1621 taatgattgg acaccaacaa gtccagcact acgtgaatta aatgtacagt tcaaaaactt
     1681 tgcagatagt ttaccaggtg ccaccttatg ggctggtaaa cgtttttacc aacgccatga
     1741 tgtacatatg aatgacttct attactggga tatttcaggt ccgggtgcag gggttgaaaa
     1801 tattgattta ggcttcggaa aactctcttt agcggttact cgtgatacag agcgtggagg
     1861 ggcgaatact tttggatata ctacagttta taaattagat cctagcacag gtaaaattaa
     1921 attagataag cagcgtaata aagccgatgt ttacaacgat atttttgatg ttcggttagc
     1981 cggtattgag ctttggaaag atggttcgtt agagttaggc tttgattacg gtaatgcaca
     2041 tgctaagaaa ggtgcagccc ttgaaaaagg agcaaccaaa aacggttata tggtaacagc
     2101 ggaatacact caaggtaact tctttggtgg tttcaataaa tttactgcac aatatgcaac
     2161 cgactctatg acttcttgga ataatgggca cgcacagggt tcgaaagcag ataataaagg
     2221 taatatgctt cgtttaatca accaaggggt agtgcaagcg agtgataaag ttgaagtaat
     2281 gtatgcctta atctacgaaa aaacaaaact agataataaa caaggtaaaa cttggtactc
     2341 agcaggtatt cgcccaatgt acaaatggaa tgatacaatg agtacattat tagaagttgg
     2401 ttatgatcgc attaaagatc aagcaacagg caagaaaaat gacttggtaa aatacaccgt
     2461 tgcacaacaa tggcaggctg gtaatagcat ttgggctcgc cctgcaatcc gtgtgtttgg
     2521 tacttatgca cgttggaatg ataaattcaa cacgaaagct cgtaccgatg ccggctataa
     2581 agccaaagac ggcgagttta tcaccggtgt tcaatttgaa gcttggtggt aatcatcaaa
     2641 cctttgtgtg ggtaggatta cctacccact atttcagcac tttatcctat ttcacgattt
     2701 ttaggggtta atatgaaaaa aacgcttctt tcgacagcaa tattcttcgc ccatcttttg
     2761 gtggtgtctc cgagtatagc aaatggctcg gcaggtaagt ctattcatat taactcggct
     2821 gaattagctc aaattcaatg gcaagatgtg ccattttcac aaaccgtaaa aacagatcta
     2881 agcgagcaac acaaacaagc atttaccaca gcgtttgccg gtattgccag cccggttgca
     2941 gcttatcgta ttccggcaaa tcaaggcaca ttggaaattg aaatcgaaag cccggtgatg
     3001 gacaaaaatg tttttgtacc cacggcagtc gtgttggata gtcaatttaa tgtggcatca
     3061 acttacccct cttctgagtt taaattattg gaagagcgag gactcaaagg tagccgttta
     3121 ggggcagaac ttaatttaac gccggcaatg aaccaagatt atatttactt gctcatttat
     3181 accacgcagc aagatttagc caaaaccacg atgatgccgc atccggcaaa aacctatgca
     3241 aaagcaaccg gtaaacaacc accagcaatt aacgatattg aagtagcaca cagtttaaaa
     3301 gggcaaattc acatcaacgt taccggctcg aacggcacta aatttattgg attaccgact
     3361 gaaattttca gctcaaacaa agcagcaacg ccggcagcta aaacggctat accgttgccg
     3421 ataaaagaaa atccagttgc agtaaaaaca gcagtagata aagatacgga agcctatttt
     3481 aatcaggcgg taatgaaagc gattaaagca aaagatatta ataaagcgat gaatttggtt
     3541 aacgaggcag aaaaattagg gctgacttct ccacgccaaa ttttcttaaa aaatgtaagt
     3601 tcaaattgat ttattgtttt tttcatagat attctccttg tcatcgtgcg atggtttatt
     3661 accattaaca ccctatcaga ttatgccgat agggtgcttt tttacgagtg attatgcgat
     3721 atgtatagga aggcttatac ttgaataagg attcaaagta taaattcttt aatttttatc
     3781 agtgatatcc acttttataa cttctactgt ctcaccaagc tcttctaaaa tatcagccgt
     3841 ttcttcatta agtgcactac cttcgtgttg tggatttacc caaggtgttg gtacccaata
     3901 tttgcggata acttctgcgg agaaaccgtg taataattcc tcattaaagc gttctgcatc
     3961 taatcggcga acatagctga taatttgttt tgcctcttcc tcgctagaac ctaagcgttc
     4021 aatggcggct tggcttaatg cgagggctga ttcaaaggtt tctcgaatgt gataatcaac
     4081 gtggtgcttt ttgactaaat caaccgcact ttgtctatca taggttctcg caaatacagg
     4141 tactaagggg tattcagatt taatcagctc tacgattttc tccgttcttt ccggattgcc
     4201 tacgccaaca attacgcagt ttgcattggc gatgccagat gccctaagta catctagtct
     4261 cgctccatca ccatagtaaa gtttaaaacc aaaacgagca gcagcacgaa tatgatcagt
     4321 atttgaatca ataaccgata cacttagtcc tttggctaat aaggcttggc agactatttg
     4381 gttaaagcgt ccaaaaccga tgactaatac attggcttct aaatcttccg gtaattcaac
     4441 ccctgtcata ttagtggatt catttttcgc ttttttcttt ctcactcctt gcttgattaa
     4501 aatgagaagt ggggaaagca acattgagac aattaccgca gcggttaagg tagcgtgagt
     4561 atctggggtt aaaatcccag cggttgcggc ggctgagaat agcacaaagg caaattcacc
     4621 accgtgagcc ataatggtag ttcgcacaat agattcattc agtgttaatc gggtgataga
     4681 ggcagcaatg aagattccaa ggcctttacc gataacataa actgctacaa tcaccaataa
     4741 ccatagccaa ttattgagga cgaggctgag gtctaatgac attcctacgc ccataaagaa
     4801 taagcctaaa agtaaaccac ggaagggttc aatatcagct tctagttgat ggcggaaaga
     4861 agactccgaa agcattactc cggcaaggaa tgcccccatt gccattgaaa gcccactgat
     4921 ttccattaaa agagcggagc ctaataccac aagtaaggca gcggcagtca tcatttctcg
     4981 tactttggct ttagaaataa cacggaaaat agggttcatc agccattttc cactcgcaac
     5041 caaaataaga acggcaacta ggctaagacc aatagcagac caattagtac tggattcagc
     5101 atctacttgg ttaggagcaa gaaaggcaac cgaggctaat aatggcacaa tcgctaaatc
     5161 ttcaaatagt aaagttgcaa caatacgttg cccttttggc gtggaactta tccctttatc
     5221 ttccagcact tgcattacaa tggcagtaga agatagcgta aaacccatac cggcaataaa
     5281 tgccacttct ttggaaaaac ctaataagta aatgccggct aaggttaata aagtaccgca
     5341 aatcgcaact tgtaagaaac ctcgcccgaa gatggcttta cgcatcgccc aaagcagttc
     5401 cgggtgcatt tccaaaccaa taataaacaa aaacataacc acgccaagtt ctgccatatg
     5461 cacaacagcg gcagggtctt ggaacaatcc aatgcccgat ggcccgatta aacatcctgc
     5521 gactaaataa cccaatacgc ttcctaaacc aaggcgttta aatagcggta caatagtgac
     5581 gctggttgca agtaatgcga ctgttttaat taattccgga ctaactaatc ctgacataga
     5641 attcccacct gtataatata aataagatta atgatgtttt tgtgctaaat aatctaaatg
     5701 ctggcggctt tgaaacggca caatacataa ctcaccgttt ggtgaaataa gttgataaaa
     5761 ttgtggatga ttaaagcttc caaatgatgc tggtgtttct gtttttaatt gtttttcatt
     5821 ttgtaattta ttgattttcc tgattttctc ttctttattg ccgaaacagt tatagtaact
     5881 ttcgac
//
LOCUS       DANLVT010000134         5766 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.134, whole genome shotgun sequence.
ACCESSION   DANLVT010000134 DANLVT010000000
VERSION     DANLVT010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5766)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5766)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5766
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.134"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            105..1976
                     /gene="rpoD"
                     /locus_tag="PXC99_002214"
     CDS             105..1976
                     /gene="rpoD"
                     /locus_tag="PXC99_002214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HDL5418625.1"
                     /translation="MENQADQQLEQQSQLELLISQGREQGYLTLSEVHDHLPEELVDA
                     EQIEDIIQMINDMGIQVLEAAPDADDLLLAENIADEDVVEEATKVLSTVESELGRTTD
                     PVRMYMREMGTVELLTREGEIDIAKRIEEGINEVQCAIAEYPEALSGLLACYAQVETG
                     EMRLSDLVTAFVDPNILEEAPLEDIEAALGEDEESSDVPDVDDENEDENGDSSSDSSD
                     DSSIDPELAREKFEALRSQHEKVLLVIQKHGRTSKKSKEQIEILSHIFREFRLVPKQF
                     DLLVASMQKLMKQVRTEERQIQRYAVEYAGMKKADFLKAFQGHELSEAWIEKAINAKK
                     NAAPKLANYVDNIRVNIANLQNLEQTSGLTIAQIREIGGRISNGELKARRAKKEMVEA
                     NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAIT
                     RSIADQARTIRIPVHMIETINKLNRISRQCLQEMGREATPEELAERMGMPEDKIRKVL
                     KIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSATAESLRMATNEVLEGLTPREA
                     KVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLDD"
     gene            2070..3056
                     /locus_tag="PXC99_002215"
     CDS             2070..3056
                     /locus_tag="PXC99_002215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3298 domain-containing protein"
                     /protein_id="HDL5418626.1"
                     /translation="MKKSLLALLIGSVFLISACEDGKMTQTVLEAEKQIVQLGTELKN
                     AQADLAKKEAEVAELSGVKAENEKLKSELENAQQNTALNVEIVKIFDKKEVIKHQVDP
                     KQEFAIEESTVSAFVSLPKTNFDWLNQLLINQAYDYNEEQGRKLKNPTEEEFKKHREA
                     VYQGLVESVKTEPAIGYDDHISSAFIGQRNNIATFTMMHYTYMGGAHGMHYTQYINVD
                     LAKKAIIGLNDLISPKNQVQLKDILWENYSSVRVDENGNYNGFADKKEFRISDQFYFT
                     PHGIAFVYPPYELGAYAEGDIEVEADWYIINKLLNSEYQRGEKDGFFEELDN"
     gene            complement(3132..4040)
                     /locus_tag="PXC99_002216"
     CDS             complement(3132..4040)
                     /locus_tag="PXC99_002216"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HDL5418627.1"
                     /translation="MNKNSLFSIWFTTARPKTLPLALASIIVGSALAHWAGKFDVVTT
                     LLAFITTILLQILSNFANDYGDHVKGSDTKERIGPLRAIQHGVIGGEQLKKAVIILSL
                     LSFVSGVALSAYAFETVQDLFFFIGLGIVSIIAAITYTVGKKAYGYLGLGDLFVLIFF
                     GFVAVIGVFYLQAHSLPIMILLPAFGCGLLSVAVLNINNLRDINQDRQAGKNTLIVRI
                     GSQNGRKYHVALLVLAVISYLIFAISEFEHWYSFIFLLSVPLLAKHARFVYQHKDPKE
                     LYPILGQMAGLALLTNLLFSLGIVLG"
     gene            4220..4957
                     /gene="tsaA"
                     /locus_tag="PXC99_002217"
     CDS             4220..4957
                     /gene="tsaA"
                     /locus_tag="PXC99_002217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase
                     TrmO"
                     /protein_id="HDL5418628.1"
                     /translation="MNSTSNQLTPIQLNPIGFVESPYDEKFSVPRQPNLVAEGKGILR
                     LIPPYNTPDAVRGLEKFSHIWLIFQFHHIPEREWHATVRPPRLGGNERVGVFASRATH
                     RPNPLGLSKVKLEAVVAGGSEVYLKLGSVDLVNGTPIFDIKPYIAFADSEPQAVSGFA
                     QQKPQARLAVRFSEEAKQAVEFCRNFAKFGIEQPLSFLADVIAQDPRPAYQQGKPSER
                     VYGMNLAGYNIRWQIENDTQAIVLSIE"
     gene            5015..5734
                     /locus_tag="PXC99_002218"
     CDS             5015..5734
                     /locus_tag="PXC99_002218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253715.1"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HDL5418629.1"
                     /translation="MKLKNFLTILPLAVATAVTSAETHTVEHKDKPASFNFSTEVSRT
                     VEKDVMQASVYSQKSGNSLPELKKFVSENLNRVLAEAKKHPSIEVQAEGVTNHVNYNN
                     KGNIDGWDTSGSIQLKSKDFDAMAAVLENLGKDVAIRYIDFSVSPEKMASLEDEMTLE
                     IISKFQHKADVIQKALGAKTYKLVNINIQTPNDGGRPYYEHRAMYAVSSMAQSKSMDE
                     IPLEAGKTTISATASGSVEFE"
BASE COUNT         1869 a         1082 c         1300 g         1515 t
ORIGIN      
        1 gtgtaaatta gaaaaataga atttttttgt gaatttatga agtcgaacca aatttagtgg
       61 tataatccac tactattttt gctcgcataa taaacggata gactatggaa aaccaagcag
      121 atcaacaatt agaacagcaa tctcaattag aacttctgat cagtcaaggg cgtgaacagg
      181 gatatttaac gctttctgaa gtgcacgacc acttaccgga agagttggtg gatgcggagc
      241 agatcgaaga tattattcag atgatcaacg atatgggtat ccaagtttta gaggctgccc
      301 ctgatgcgga tgatttacta ctcgctgaaa atatcgccga tgaagatgtg gtagaagaag
      361 ccaccaaagt gctttcaacc gtagaatcag agttaggtag aactactgac cctgtgcgta
      421 tgtatatgcg tgagatgggg acagttgagc ttttaacccg tgaaggtgag attgatatcg
      481 ctaaacgcat tgaagaaggg attaacgaag ttcaatgtgc gattgcggaa tatccggaag
      541 ccttaagtgg cctgttagcc tgctatgctc aagtcgaaac cggtgaaatg cgcctttctg
      601 atttagtgac agcatttgtc gatcctaata ttttagaaga agcaccgtta gaggatattg
      661 aggctgcttt aggtgaagat gaagaatctt ctgatgtgcc tgatgtagat gacgaaaacg
      721 aagatgaaaa cggtgatagc agttcagaca gcagtgatga cagctcaatt gacccggaac
      781 ttgcccgtga aaaatttgaa gccctacgca gccaacatga aaaagtgtta ttggtcattc
      841 aaaaacacgg gcgaaccagt aaaaaatcga aagagcaaat tgaaatttta tctcatattt
      901 tccgtgaatt ccgtttggtg ccgaagcaat ttgacttatt ggttgcttct atgcaaaaac
      961 tgatgaagca ggttcgcact gaagaacgtc aaattcaacg ctatgcagtg gaatatgccg
     1021 gcatgaaaaa agcggatttc ttgaaagcat tccaagggca cgaattaagc gaagcgtgga
     1081 ttgaaaaagc gattaatgcc aagaaaaatg cagcaccgaa attagctaat tatgtggata
     1141 atatccgtgt caatattgct aacttacaga atttagagca aacatcaggc ttaaccattg
     1201 ctcaaattcg tgaaattggc gggcgtattt ccaatggtga gttaaaagcc cgccgtgcga
     1261 aaaaagagat ggtggaagct aacttacgtt tggtgatttc gattgcgaaa aaatacacta
     1321 accgtggctt gcagttctta gatttaatcc aagaaggaaa catcggttta atgaaagcgg
     1381 tggataaatt tgaataccgc cgtggttata aattctcgac ttatgcaact tggtggattc
     1441 gtcaagcgat tacccgttcg attgctgacc aagcccgtac aattcgtatt ccggtgcata
     1501 tgattgaaac tatcaacaaa ctcaaccgta tttcacgcca atgtttacaa gaaatggggc
     1561 gtgaggcaac gccggaagaa ctggcagaac gtatgggaat gccggaagat aaaatccgca
     1621 aagtattgaa aattgccaaa gagccgattt caatggaaac accaatcggt gacgatgacg
     1681 attcacattt aggtgatttc attcaagacg aaagccttga attaccattg gattccgcca
     1741 ctgcggagag cctgcgtatg gcaacgaacg aagtgttaga gggcttaacc ccgcgtgaag
     1801 cgaaagtgtt gcgtatgcgt tttggtattg atatgaacac agaccacaca ctcgaagaag
     1861 ttggtaaaca atttgacgta actcgtgaac gtatccgcca aattgaggcg aaagcactgc
     1921 gcaaacttcg ccacccgagc cgttcggaaa ccttacgcag tttcttagac gactaatcat
     1981 ttcccctatg cctgatggta taggggattt tgttttaatc tgtataacaa gcggtgatat
     2041 ttaccgtatt ttttacaaaa gagggagaga tgaaaaaatc actattagca cttttaattg
     2101 gctcagtatt tctgatttca gcttgtgaag acggcaaaat gacccaaacg gtattagaag
     2161 ccgaaaaaca aattgttcag ttaggcacag aattaaaaaa tgctcaggct gatttagcaa
     2221 aaaaagaggc tgaagttgca gaactttcag gggtgaaagc agaaaatgaa aaattaaaat
     2281 cagagttaga gaacgctcag caaaacacag cgttaaatgt tgaaattgtg aaaatctttg
     2341 ataagaaaga ggtgattaag caccaagttg atccgaaaca agaatttgca atagaagaaa
     2401 gtacagtaag tgcgtttgtg tctctaccaa aaaccaattt tgattggctt aaccagcttt
     2461 tgattaatca ggcctatgat tacaatgaag aacaaggcag aaagctgaaa aatccaaccg
     2521 aagaagagtt taaaaagcat cgtgaagcgg tttatcaagg gttggtagaa agtgtgaaaa
     2581 ccgagccagc tattggctat gatgatcata tttccagtgc ttttatcggg caacgcaata
     2641 atattgctac attcactatg atgcattaca cctatatggg tggggctcac ggtatgcact
     2701 atacgcaata tatcaatgta gatttagcta aaaaagcaat cattggctta aatgatttaa
     2761 tcagcccaaa aaatcaagtt caactgaaag acattctttg ggaaaattac agtagcgtgc
     2821 gtgtggatga aaatggcaac tataatggat ttgctgataa aaaagagttc cgtatttctg
     2881 accaattcta ctttacccct cacggcattg cttttgttta tccgccatac gaattaggtg
     2941 cttatgcaga aggcgatata gaggttgaag cggattggta cattattaat aagttgctca
     3001 attcggagta tcaacgtggc gaaaaagatg gattctttga agaactagat aactaattgt
     3061 aaatttagat aaaaaacaac cgcttgtaat cctttattac aagcggttta gttttgttaa
     3121 aattttgcaa cttaccctaa cacaatgccc aaactaaata atagattagt gagcaacgcc
     3181 agccctgcca tttgccctag aattgggtag agttcttttg ggtctttatg ctgatagaca
     3241 aaacgagcgt gttttgccag taacggtaca gacagcaaaa aaatgaagct ataccaatgt
     3301 tcaaattcag aaattgcaaa aatcagataa gaaatgaccg ctagcactaa caatgcaacg
     3361 tggtattttc gcccgttttg gctaccgatt cgtacaatga gagtgttttt cccagcttgt
     3421 cggtcttggt taatatcacg caagttattg atatttaaca ctgctacaga cagcaatccg
     3481 caaccgaaag cagggagcag aatcattata ggtaggctat gagcctgcaa gtagaacacg
     3541 ccgattaccg ctacaaagcc aaagaaaatc agcacaaata gatcgcccag ccccaaatag
     3601 ccgtaggctt ttttgccgac ggtgtaagta atggcggcaa taattgagac gatgccaagc
     3661 ccgataaaga aaaacagatc ctgcactgtt tcaaaagcat aggcacttaa ggcaacaccg
     3721 gaaacaaacg agagtaggct taagataatc acggctttct taagttgttc accgccaata
     3781 acaccgtgtt gaatcgcccg tagcggtccg attcgttctt tggtgtcaga gcctttgacg
     3841 tggtcgccgt aatcattggc gaagttagac aggatctgca acaaaatggt ggtgataaat
     3901 gcgagtaagg tggtaacaac atcaaatttc cctgcccaat gagcaagtgc tgaacccaca
     3961 ataattgaag ctaacgccag cggtaaagtt ttcgggcgag cggtggtaaa ccaaatcgaa
     4021 aagagagaat ttttgttcat agagaataat cttagcgtaa tttcatttac aatgatgtta
     4081 aggatttaag cgatagtgca agcgtccact cttgtgttaa atggtaaaac gaattggtac
     4141 aagcgtggac gcttgcacca tcctcaattt catatcatta tgtccaatat tttatattat
     4201 tttaacagaa aaaagcgtaa tgaactctac ctcaaatcaa ctaaccccga ttcaattaaa
     4261 ccctatcggt tttgtggaaa gcccctatga tgaaaaattt tccgtgcctc gccagccgaa
     4321 tttggtagcg gaggggaaag gcattctacg tttaattccg ccttacaata cccccgatgc
     4381 agtcagaggc ttggagaaat ttagtcatat ttggttgatt ttccaattcc atcacattcc
     4441 cgaaagagag tggcacgcca ccgtcagacc gcctcgcttg ggcgggaacg aacgggtcgg
     4501 ggtctttgcc agccgtgcca cccatcgtcc gaatccgctt ggcttatcga aagtgaagtt
     4561 agaagcggta gtggcggggg ggagtgaagt ttatttgaaa ttaggcagcg tggatttagt
     4621 taacggcaca ccaatttttg acatcaagcc ttacattgca tttgcagata gcgagccgca
     4681 agcggtttcc ggttttgctc agcaaaaacc acaagcaaga ttagcggtgc gttttagcga
     4741 ggaggcaaaa caagctgtcg aattttgccg aaattttgca aaatttggca tcgaacagcc
     4801 gcttagtttt cttgccgatg tcatcgccca agaccctcgc ccggcgtatc aacaagggaa
     4861 acctagtgag cgagtttatg gtatgaacct tgccggctac aatattcgct ggcaaattga
     4921 aaatgataca caggcgattg tgctttcgat tgaatgaact ttcctacgca agtgagatct
     4981 aagaaatgat ttttaaccct tttaaggact gattatgaaa ttgaaaaatt ttcttaccat
     5041 tctaccgctt gcagtcgcaa cagcggtaac ttcagcggaa actcataccg tggaacataa
     5101 agataaaccg gcttctttta atttctcaac cgaagtctct cgcacggtgg aaaaggacgt
     5161 gatgcaggca agtgtgtata gccaaaaatc aggtaactcc ttgccggagc tgaaaaaatt
     5221 tgtatctgaa aacctgaatc gtgtattggc tgaggcaaaa aaacatccat cgattgaagt
     5281 acaagctgaa ggtgtgacta atcacgttaa ttataacaac aaagggaata ttgatggttg
     5341 ggatacctct ggtagcattc agttgaaaag caaagatttt gatgcaatgg cagcggtgtt
     5401 ggaaaattta ggtaaagatg tggcgattcg ttacattgat tttagtgtat cgccagagaa
     5461 aatggcgtcc cttgaagatg aaatgacgct ggaaattatc agcaaatttc agcataaagc
     5521 cgatgtgatt caaaaagcct taggggcgaa aacatataag ctagttaata tcaatattca
     5581 aactccaaat gatggtggta gaccatatta tgaacacaga gcaatgtatg cagtttcatc
     5641 aatggcacaa agcaaatcta tggatgaaat cccgttagaa gcaggtaaaa ccacaatttc
     5701 agctaccgct tcaggaagtg tggaatttga atagaaatgt atagatttgt atagagttgt
     5761 attttt
//
LOCUS       DANLVT010000135         5638 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.135, whole genome shotgun sequence.
ACCESSION   DANLVT010000135 DANLVT010000000
VERSION     DANLVT010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5638)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5638)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5638
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.135"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            43..732
                     /locus_tag="PXC99_002219"
     CDS             43..732
                     /locus_tag="PXC99_002219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HDL5418630.1"
                     /translation="MSTLSRDSILSQIQNGLIASCQPVDDGPMDKPEIVAAMAAASVI
                     GGAKGIRIEGVDNLKAARAAVNVPIIGIVKRDLPDSPVRITPFLEDIDALAEAGADII
                     AVDGTFRTRPVSIEEAVKRIHEKGCLAMADCSTLEEGLHCQQLGFDIVGSTMSGYTGG
                     EMPDEPDYQLVKDLKAAGCNVMAEGRYNTPELAKTAIEIGADYVTVGSALTRLEHIVS
                     WFADSVKSAQK"
     gene            742..1644
                     /locus_tag="PXC99_002220"
     CDS             742..1644
                     /locus_tag="PXC99_002220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine kinase"
                     /protein_id="HDL5418631.1"
                     /translation="MRCLAIDIGGTKIATAIVQHNQVSQRQQIQTPTDKPQADQAGSL
                     HQAIGEIMQHYQGQFDFVAVASTGIINKGVLTALNPKNLGGLAEFPLKQSIEKHTDKP
                     IALLNDVQAAVCAEYLNEDQQAVKNFVFITVSTGVGGGIILNGELQIGSNGIAGHIGH
                     TLADPNGPLCGCGRVGCVEAVAAGRAIEAVSSQWEKPCSPKEVFERFRQGNPQAVELV
                     QKSAKAIANLIADLKISLDIQKVVLGGSVGLAEGYLPQVSNYLAEMPSVYHCVLENAL
                     SGQDAGLIGAAWWAENQLNQGFTL"
     gene            1669..2547
                     /gene="nanA"
                     /locus_tag="PXC99_002221"
     CDS             1669..2547
                     /gene="nanA"
                     /locus_tag="PXC99_002221"
                     /EC_number="4.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005718701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate lyase"
                     /protein_id="HDL5418632.1"
                     /translation="MKNLKGIFSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYV
                     GGSTGENFMLSTEEKKEIFRIAKDEAKDEIALIAQVGSVNLKEAVELGKYATELGYDS
                     LSAVTPFYYKFSFPEIKNFYETIIRETGNKMIVYSIPFLTGVNIGVSQFAELFENEKI
                     IGVKFTAGDFYLLERLRKAFPNHLIYAGFDEMMLPATVLGVDGAIGSTFNVNGIRARQ
                     IFELAQQGKIKEAFEIQNVTNDLIEGILGNGLYQTIKGLLELEGVQAGYCREPMTKEQ
                     TPAQKEVTKQLKAKFL"
     gene            complement(2608..2814)
                     /locus_tag="PXC99_002222"
     CDS             complement(2608..2814)
                     /locus_tag="PXC99_002222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418633.1"
                     /translation="MDNKQTNGFNDIIVKADITQNIWSTGFYDIGRELKSENTRQEKV
                     RLKYNGDTLHRGRKSRMASLIASR"
     gene            complement(2772..3410)
                     /locus_tag="PXC99_002223"
     CDS             complement(2772..3410)
                     /locus_tag="PXC99_002223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418634.1"
                     /translation="MKKILLLVLLLTLATQADEGNNTQVCAEQQHQIIAHYFKISQEK
                     LSARTLASACKTAPNNSTETLVSYAVIEPKYSKENYQNDENTPKWTLFVARVNDNAIL
                     QSWEQDMEIDASIDVNADSLKIDTARYILNDKVRAFGVRFNNAARGPSAPEYSANDHL
                     MLFVPEKEKLKLVFDYPMTFWSILDDKETKTETQTWYCKWITNRPTASMILL"
     gene            complement(3652..4371)
                     /locus_tag="PXC99_002224"
     CDS             complement(3652..4371)
                     /locus_tag="PXC99_002224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5418635.1"
                     /translation="MSKPNIYDESFSERMKWIAKNSFKDNYSEFARAVGVAQASLSRW
                     VKGEADPSRSNLVKIAEVSNVSLEWLATGKESKPQSENTSIVAREFERLEKMADDIVS
                     MINSFRTINVSAGFGSFNEGVTKPDGQEPYADSLLQSLGVKAHNCGVFWANGTSMHPT
                     IADSDQMLVDFSKREPRGDDKIYLVQNGESVWVKRIRKEWDYIELISDNESYRPIQIT
                     AEEAQNLQIIGQVVHIGHSLV"
     gene            4548..4826
                     /locus_tag="PXC99_002225"
     CDS             4548..4826
                     /locus_tag="PXC99_002225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5418636.1"
                     /translation="MSVLNDVKKTAQRDWHKADILAELRKKGWSLRSLAKAGNVSHNT
                     LKSVLDKPYPKMERLVANAIGVAPEVIWAGRTAERIERNRRPTLTNKF"
     gene            4871..>5638
                     /locus_tag="PXC99_002226"
     CDS             4871..>5638
                     /locus_tag="PXC99_002226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5418637.1"
                     /translation="MSELSLKTHYSVAELLSFKLSSLPSAHKNVLEKAIRENWQSQKR
                     KGRGGGVEYELISLPTEVQQEIRTKLLKLLPAEISKGELSVVRQNIDLEQITDKQLST
                     ADARIMVVRWFLMQEVQLGLSRTKTLDQVIAAVASSEIPAEICKAIMAGNSKAGGKLK
                     LSKRTLHSWVLAYEAGENSAERLKQMIPLKTQKRAVPERCGWLQAFLPFYQTFSNVAL
                     TQAYAQFAMQYEGEDLPTESQVRYALKQLPDYVVQQGR"
BASE COUNT         1680 a         1146 c         1237 g         1575 t
ORIGIN      
        1 ctagtccatt gactaccttt tgaacataaa aaaggaactg ttatgtcaac actatctcgt
       61 gattctattt taagtcaaat tcaaaacggg ctgattgcct cctgccaacc ggttgatgac
      121 ggccccatgg ataaacctga aattgtcgcc gcaatggcag cagcctctgt gattggtggt
      181 gctaaaggca ttcgcattga aggtgtcgat aatttaaaag ccgctcgtgc ggcagtgaat
      241 gtgccgatta tcggcattgt aaaacgtgat ttgccagatt cccctgtgcg tattacgcca
      301 tttttagaag atattgatgc cttagccgaa gccggtgccg atattattgc ggtggacggc
      361 acattccgca cccgcccggt cagcattgaa gaggcggtaa aacgcattca cgaaaaaggt
      421 tgcttggcaa tggcggattg ctccaccctt gaagaaggtt tacattgcca acaattaggc
      481 tttgatattg tgggtagtac aatgtctggc tacaccggtg gcgaaatgcc tgatgagccg
      541 gactatcaat tagtgaaaga tttaaaagct gccggctgta atgttatggc ggaaggtcgc
      601 tacaacacgc ctgaactggc aaaaacggcg attgaaatcg gggcggatta cgttaccgtt
      661 ggatcggcat tgacccgctt agagcatatt gtgagctggt ttgccgactc tgtaaaatcg
      721 gctcaaaaat aggagctgct tatgcgttgt ttagcaatag acatcggtgg cacgaaaatt
      781 gccacggcaa ttgtgcaaca caatcaagtg tcacaacgcc aacaaattca gaccccgact
      841 gataaaccac aagctgatca ggcaggcagt ttgcatcaag cgattggtga gataatgcaa
      901 cattatcaag ggcaatttga ttttgtggca gttgcctcaa caggcattat caataaaggg
      961 gtgcttaccg cattaaatcc taaaaattta ggcggattgg cagaatttcc gttgaaacaa
     1021 agcattgaaa aacataccga taagccgatt gcattattaa atgacgtgca agcagcggtg
     1081 tgtgccgaat atttaaatga agaccaacaa gcggtcaaaa attttgtatt tattaccgtt
     1141 tccaccggcg taggcggcgg cattatttta aacggcgaac tgcaaatcgg cagtaacggc
     1201 attgcaggac atatcgggca tactctagcc gatccgaacg ggcctctctg tggttgtgga
     1261 cgagtcggct gtgtcgaagc agtcgcagca gggcgtgcaa tagaggcagt ttccagccaa
     1321 tgggaaaagc cttgttcacc gaaagaggtg ttcgagcgat tccgccaagg caacccacaa
     1381 gcggtcgaat tagtacaaaa atctgcaaaa gcgattgcta atttaattgc agatttaaaa
     1441 atcagtttag atatacaaaa agtggtgtta ggtggcagtg tgggcttagc ggaagggtat
     1501 ttaccgcagg tgtccaacta tttagctgaa atgccgagcg tatatcattg cgtattggaa
     1561 aatgctctat ccgggcaaga tgccggctta atcggtgcgg cttggtgggc ggaaaaccaa
     1621 cttaatcaag gttttactct ttaacaaatt ctaactccgg agatccaaat gaaaaactta
     1681 aaaggtattt ttagtgcgtt actcgtctct ttcaacgaag acggcaccat caacgaaaaa
     1741 ggcttacgcc aaattatccg ccacaacatc gacaaaatga aagtggacgg tttatatgtc
     1801 ggcggttcaa ccggtgaaaa ctttatgctt tctaccgaag agaaaaaaga aattttccgc
     1861 attgccaaag acgaagcgaa agatgaaatc gcccttatcg cccaagtcgg tagcgtaaac
     1921 ttaaaagagg cggtagaact gggtaaatat gccacagaat taggctacga cagcttatct
     1981 gcggtcacac cgttctacta caaattcagc ttcccggaaa tcaaaaattt ctacgaaacc
     2041 attattcgtg aaaccggcaa caaaatgatt gtttactcca ttccgttctt aaccggcgta
     2101 aacatcggtg tgagccaatt cgctgaatta tttgaaaacg aaaaaatcat cggtgtaaaa
     2161 ttcactgccg gcgatttcta cctgttagag cgtttacgca aagcgttccc gaaccactta
     2221 atctacgcag gtttcgatga aatgatgcta ccggcaacgg tattaggtgt ggacggtgca
     2281 atcggctcaa ccttcaacgt aaacggtatt cgtgcaagac aaatctttga attagcccaa
     2341 caaggcaaaa tcaaagaagc atttgaaatc caaaatgtaa ccaacgattt aatcgaaggc
     2401 attttaggca acggtttata ccaaaccatc aaaggcttat tggagttaga aggtgtgcaa
     2461 gcaggttact gccgtgagcc gatgacgaaa gaacaaactc cggcacaaaa agaagtgacc
     2521 aaacagttaa aagctaaatt cttgtaattt aagttgcaaa aggctaaacg aaaatcaccg
     2581 cttgtagtaa caagcggtga ttttttctca acgacttgca attaatgaag ccattctgct
     2641 ttttctacca cggtgtaacg tgtcaccatt atattttaat cgcacttttt cttggcgagt
     2701 attttctgat ttcaactctc tacctatatc ataaaaccct gtactccaga tattttgagt
     2761 aatatccgct tttacaataa tatcattgaa gccgttggtc tgtttgttat ccatttgcaa
     2821 taccaagttt gtgtttccgt tttggtttct ttatcatcta aaatagacca aaaagtcatc
     2881 gggtaatcaa aaacaagttt taacttttct ttttccggca caaataacat caaatgatca
     2941 tttgcagaat actcaggagc acttggacca cgagcagcat tattaaacct cacgccgaaa
     3001 gctcttactt tgtcgtttag aatataacgg gcggtatcaa ttttaagact atctgcattc
     3061 acatcgatag aggcatcgat ctccatatcc tgctcccacg attgcaatat cgcattatca
     3121 ttcacacgag caacaaaaag cgtccactta ggtgtgtttt cgtcgttttg ataattttct
     3181 ttgctgtatt taggctctat taccgcataa ctcactaagg tttccgttga attgttagga
     3241 gctgttttac aggcagaagc taaagtacga gcagaaagtt tctcttgaga aatcttaaag
     3301 taatgagcaa taatttgatg ttgttgctca gcacaaacct gtgtgttatt accttcatct
     3361 gcttgagttg caagcgtaag taaaagaact aagaggagta tctttttcat atagatttat
     3421 ccgtatagaa agataactca ttctatgggg tactgactct ttttgcatag agagaaagaa
     3481 aaaaatttgg tcggaaaaat aacggcgagc ctagcgaaaa caagggttcg ccgtaatttt
     3541 atgggggaag ctatgtaaaa aacaaaatga gcaggattag aaaaaaatga gcagtttttg
     3601 cgatattttt tgcataggtt tgatcggttt taaaactatt ttaaatctgt tttaaactaa
     3661 agagtgtccg atgtggacta cctgcccgat gatttggagg ttttgagctt cttcggcggt
     3721 aatctgtatt gggcggtagg actcgttatc gctaattaat tcaatatagt cccattcttt
     3781 tctaatccgt ttaacccata cgctttcccc attctgcaca agataaatct tatcatcacc
     3841 acgaggctct cgtttgctga aatctaccag catttggtca ctgtctgcaa tggtagggtg
     3901 cattgatgtt ccatttgccc aaaacacgcc gcagttgtgg gcttttacgc cgaggctttg
     3961 cagcaggctg tcggcgtaag gttcttgccc gtctggcttc gttacgccct cgttaaagct
     4021 gccaaagcct gctgaaacgt tgattgttct gaagctgtta atcattgaaa caatatcatc
     4081 agccattttt tctagtcgct caaactctct tgccacaata ctggtattct ctgattgtgg
     4141 tttgctttcc ttacctgttg ccagccattc aaggctcaca tttgacacct ctgctatttt
     4201 tacaagattt gaacgagatg gatctgcctc tccttttacc cacctagata gtgatgcttg
     4261 ggctaccccc actgctcttg caaactcact gtaattgtcc ttaaagctat tttttgcaat
     4321 ccatttcatt ctttctgaga agctctcatc gtaaatgttt ggtttactca tcttttacgt
     4381 ttccattaat aaagttttac tcgtaaaaca tactcataaa ccattgattt ttaagttatt
     4441 tatgaataaa gcaaaaatat tttagatgtt tttatgtttt acggttgatt tgtttaaagt
     4501 tttacggtta aatacacgca tcaaatagat aaaaagaggt gtatcgaatg agtgtattaa
     4561 acgatgttaa aaaaaccgca cagagagatt ggcataaagc cgatattctt gcggaacttc
     4621 gtaaaaaagg ttggtcactt cgttctttgg ctaaagcagg caatgttagc cataacacgc
     4681 tgaagtctgt tttagacaag ccttacccca aaatggaacg cttagttgca aatgccatag
     4741 gggttgcccc tgaagtgatt tgggctgggc gaacagcaga acgcattgaa cgtaatcggc
     4801 gaccaacttt aactaataag ttttaatcat aaatgatctt taacgtaaaa gatataggag
     4861 aagaacattt atgagcgaat taagtttaaa aacgcactat tcagtggctg aattgttaag
     4921 ttttaagtta tctagcctac caagtgctca taaaaatgtg cttgagaaag caataaggga
     4981 aaactggcaa tctcaaaaac gcaaaggcag aggcggcggg gttgaatatg aattaatcag
     5041 tttacccacc gaagtccaac aggaaatccg caccaagtta ctcaaacttc ttcctgctga
     5101 aatcagcaaa ggcgaattga gtgtagtgcg acaaaacatt gatttggagc agataaccga
     5161 taaacaactt tctacggcag atgctcgcat tatggtggtg cggtggttct tgatgcagga
     5221 agtgcagttg gggctaagcc gcacaaaaac gctagaccaa gtcattgcag cggtggcaag
     5281 cagtgaaatt cctgctgaaa tttgcaaagc gattatggcg ggcaatagta aagccggtgg
     5341 aaagttaaag ctatctaaac gcaccttgca tagttgggtg ctggcgtatg aggcaggcga
     5401 aaattcagcg gaacggttaa aacagatgat accgctgaaa acacaaaaac gtgccgtgcc
     5461 cgagcggtgt ggttggttgc aagcctttct gccgttttat caaaccttta gcaatgtggc
     5521 actcacacag gcttatgctc aatttgcaat gcagtatgag ggcgaagatt tacctacaga
     5581 gagccaagtt cggtatgcct tgaagcagtt gcccgattat gtggtgcaac aagggcgg
//
LOCUS       DANLVT010000136         5577 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.136, whole genome shotgun sequence.
ACCESSION   DANLVT010000136 DANLVT010000000
VERSION     DANLVT010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5577)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5577)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5577
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.136"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            16..150
                     /locus_tag="PXC99_002227"
     CDS             16..150
                     /locus_tag="PXC99_002227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/trimethylamine N-oxide reductase
                     NapE/TorE"
                     /protein_id="HDL5418638.1"
                     /translation="MRSELLKTLLLSGLILPLLMAFAVGAYGFIVWMLQLFVIGLPGA
                     "
     gene            154..1317
                     /gene="torC"
                     /locus_tag="PXC99_002228"
     CDS             154..1317
                     /gene="torC"
                     /locus_tag="PXC99_002228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentaheme c-type cytochrome TorC"
                     /protein_id="HDL5418639.1"
                     /translation="MLGSIKALFTRPATKIGLGVLVGIGFIAGAISWHQFNKAMDHTS
                     TEEFCVSCHSMQQPLEELKKTAHWSNKSGVTATCSSCHLPHDYTEKYARKVQASREAW
                     AELSGKYKEEGSFEKHRLEMAEREWARFAANGSKECKACHSYERMNFDKMGEAARKAM
                     KPAAEKDQSCMDCHKGIAHHLPKADENALKSKFDQFVNKSPNQGKSYYTKGNAELFLD
                     EGLSQAIGQLETAVPVAFVQAGKNADLVELTMWRKEKGFGRIWYHDFGKNITDAVLTK
                     EFMANQPKFEVLETKEDPITGLNWQKVKLQAWIGKAQLLDDVTPIWANAENQYKTQCS
                     TCHRQPDVAHFDSNSWIGLFNGMVGFTNMDKQTGKEVLRYLQMHASDSEEAKH"
     gene            1417..3882
                     /gene="torA"
                     /locus_tag="PXC99_002229"
     CDS             1417..3882
                     /gene="torA"
                     /locus_tag="PXC99_002229"
                     /EC_number="1.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
                     /protein_id="HDL5418640.1"
                     /translation="MQQSRRQFLKNMSVMAAAVTMPNFLVPRNVFASEDLSQWKVSGS
                     HWGAMRAKIENGRVAEIKPFEFDKHPTEMLNGIKGLIYSDSRIRYPMVRLDWLKNRHN
                     SNTAQRGDNRFVRVTWDEALDLFYQELERVQKEYGPWALHTANVGWRSTGQFHSCGNH
                     MIRAIAMHGNSVGTAGDYSTGAGQTILPYVLGSTEVYSQGTSWEIILKESENIIFWAS
                     DPVKNLQVGWNCETHEAYAYLEKLKEKVAAKGVNVICVDPVKSKTQNFLGCEQQYINP
                     QTDVPFMLALAHTLYTENLYDKKFLDMYTVGFEKFLPYLLGETEDKVAKTPEWAAEIC
                     GISADKIREFARMLAGKRTQFIFGWAIQRQQHGEQPYWMGAVLASMLGQIGLEGGGIS
                     YAHHYSSIGIPESGAAMPGAFPLNIDEGQTPKYDNKDYKGYSDTIPVARMTDSLLHAG
                     ETIDYNGKKVTYAPFKMAIFTGCNQWHRHSERNKMKQAFQKLETIVSINYSWTATCRF
                     SDIVLPACTPFERNDIDAYGSYSNRGVIAMHKLVDPLYDSRSDFEIFRDLCRRFGKEK
                     EYSRGMDEMQWVEKLYKDCRRENRGKFEMPEFAEFWQKGYVLFPEGKPWVRHADFRED
                     PELHALGTPSGFIEIYSNKIASFGYDDCKGHPMWFEKAERSHGGKNSDKFPYWLQSVH
                     PDKRLHSQLCESKELRETYSVQGREPLYINPQDAAKHGIQDGDLVRVFNDRGQAIVGA
                     VLSDNFPTGVVRLQEGAWYSPLDESVGAIDTYGDPNTMTLDIGTSKLAQAVSANTCLV
                     NIEKFIGNAPAPNGFNGAIEVTA"
     gene            3882..4472
                     /gene="torD"
                     /locus_tag="PXC99_002230"
     CDS             3882..4472
                     /gene="torD"
                     /locus_tag="PXC99_002230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD"
                     /protein_id="HDL5418641.1"
                     /translation="MTLAISREERQFIYGWFNAMLARELSDEQLNALQAGEFDDFFAY
                     LSELGFAEQVAKFQAEVTACRQLEFPRLELAADFAQLFLLEGNLSAIPYASAYLSGEA
                     LAKNLAEMDRLLGEFGLQVNRETKEPSDHLCVYLTLFDRLLAEKPLETQQQFLQNQLM
                     SWLPAWFAKAKTVKTNTGVYPALLRLFEQVLLKEQR"
     gene            4612..5301
                     /locus_tag="PXC99_002231"
     CDS             4612..5301
                     /locus_tag="PXC99_002231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HDL5418642.1"
                     /translation="MQNNKTTYLNWYDLCVLTLILFGEAIYTSTQQYFITTEMQGNFE
                     ENLTFSNEQNYWALLTQLALLLIAMGYLKWRNFDFSRWVIRPSWLAFFSGIGLFILLS
                     LAMDLYFETLYGVYNLVYPEPFWAVLREVNISTVLYAILNGFYEEIFFLGICLAVKPE
                     YLKWAVIYSLIIRVSFHTYQGMESALGLGIWLGLIIYLLYSRSKQKNLFPFWVAHSIA
                     DILGLSLLAYF"
BASE COUNT         1603 a         1205 c         1348 g         1421 t
ORIGIN      
        1 aaaaaaggag ttgaaatgcg ttcagaacta ttaaaaacgc ttttgctatc agggctgatt
       61 ttaccgctat tgatggcgtt tgccgtagga gcttacggct ttattgtgtg gatgttacaa
      121 ctgtttgtta ttggtttacc gggagcgtag aaaatgttag gttcaatcaa agcattattt
      181 actcggcctg caaccaaaat cgggttggga gtgttagttg gtatcggttt tattgccgga
      241 gcaattagct ggcatcaatt taataaagcg atggatcata ccagcactga agagttttgc
      301 gtgagttgcc actcaatgca gcagccgtta gaggagctta aaaaaaccgc ccactggtcg
      361 aataaaagcg gggtaacggc aacctgttca agctgccact taccgcacga ttataccgaa
      421 aaatatgccc gcaaagtgca ggcaagccgt gaggcgtggg cagaattatc cggcaaatat
      481 aaagaagaag gctcatttga aaaacaccgc ttagaaatgg cagagcgtga gtgggcaaga
      541 tttgccgcca atggttcaaa agagtgtaag gcttgccaca gctatgagcg aatgaatttt
      601 gataaaatgg gcgaagcagc tcgtaaggca atgaaaccgg ctgcggagaa agatcaaagt
      661 tgtatggatt gccacaaagg cattgctcac cacttaccga aagccgatga aaatgcactg
      721 aaatcgaagt ttgatcagtt tgtgaataaa tccccaaacc aaggcaaatc ttactacacc
      781 aaagggaatg ccgaattatt tctagacgaa ggtttaagcc aagctatcgg gcaattagaa
      841 accgccgtgc cggtggcatt tgtgcaagcg ggcaaaaatg cggatttggt tgagctgaca
      901 atgtggcgta aagagaaagg tttcggtcgc atttggtatc acgatttcgg gaaaaacatt
      961 accgatgcgg ttctaaccaa agagtttatg gcaaatcagc cgaaatttga ggtgttggaa
     1021 accaaagaag atccgattac cggcttgaat tggcaaaaag tgaaactaca agcgtggatt
     1081 ggcaaagctc aattattaga cgatgttacc ccaatctggg cgaatgcaga aaaccaatac
     1141 aaaacccaat gtagcacttg ccacagacag cctgatgtcg cccacttcga ttccaacagc
     1201 tggatcggct tattcaacgg aatggtcggc tttaccaata tggataaaca gaccggcaaa
     1261 gaggtgctac gttatttaca aatgcacgcc tccgatagtg aagaagcgaa gcattaataa
     1321 tattactccc ctctttacta aagaggggaa ttaatcgagc gttgaataac attctctgta
     1381 ctagctcacg tttttacaaa taaagaagga caagatatgc aacaatctcg ccgtcaattt
     1441 ttaaaaaata tgtctgtgat ggctgccgct gtcacaatgc cgaatttcct cgtgcctcgc
     1501 aatgtgtttg cgagtgaaga cctcagtcaa tggaaagttt ccggctctca ctggggggca
     1561 atgcgtgcca aaattgagaa cggacgagtg gcagaaatca aaccgttcga gtttgataaa
     1621 cacccgaccg aaatgctcaa cggcattaaa ggcttaattt acagcgattc ccgtatccgc
     1681 tacccgatgg tgcgtttaga ttggctcaaa aaccgccata acagcaacac cgcacagcgt
     1741 ggcgataacc gctttgtgcg ggtaacgtgg gacgaagccc tcgacctgtt ctaccaagag
     1801 ttagaacggg tacaaaaaga gtacggcccg tgggcgttac acaccgccaa tgtgggctgg
     1861 cgttcaaccg gtcaattcca cagttgcggt aaccatatga tccgagcgat tgcgatgcac
     1921 ggtaacagtg tcggcacggc aggcgactat tctaccggtg cagggcagac cattctgccg
     1981 tatgtgctgg gttcaaccga agtctattcg cagggcacgt cttgggaaat catcttaaaa
     2041 gagagcgaaa acatcatttt ctgggcaagc gacccggtga agaacctgca agtgggttgg
     2101 aactgcgaaa cccacgaagc ctatgcctac ttggaaaaac tgaaagagaa agtggcagca
     2161 aaaggcgtga atgtgatctg tgttgatccg gtgaaaagca aaacccagaa tttcttaggt
     2221 tgcgaacagc agtacatcaa tccacaaacc gatgtgccgt ttatgttggc acttgcccac
     2281 acgctctaca ccgagaacct gtacgacaaa aaattcttgg atatgtacac ggtcggcttt
     2341 gaaaaattcc tgccgtatct gttaggcgaa accgaagaca aagtggcgaa aaccccggaa
     2401 tgggcggctg aaatttgtgg tatttccgcc gacaaaatcc gtgaatttgc ccgaatgctt
     2461 gccggcaaac gcacccaatt tattttcggc tgggcaattc aacgccaaca acacggcgaa
     2521 caaccgtact ggatgggagc ggtgctagcc tcaatgttag ggcaaatcgg cttggaaggc
     2581 ggcggcatca gctatgctca ccattacagc tctatcggta ttcctgaatc cggtgcggca
     2641 atgccggggg cgttcccgct caatattgat gaggggcaaa ccccgaaata cgacaacaaa
     2701 gattacaaag gctacagcga caccattccg gtggctcgta tgaccgacag cttgctccac
     2761 gccggcgaaa ccattgatta caacggcaaa aaagtgactt acgctccgtt caaaatggcg
     2821 attttcaccg gctgtaacca atggcaccgc cattccgagc ggaacaaaat gaaacaggcg
     2881 ttccaaaaac tggaaaccat tgtttcgatc aactacagtt ggacggcaac ctgccgcttc
     2941 tccgacatcg tgctgccggc ctgtacccca tttgaacgca acgatattga cgcctacggc
     3001 tcatacagca accgtggcgt gattgcaatg cacaagctgg ttgatccact ctacgactct
     3061 cgctccgact ttgagatttt ccgagatctc tgccgccgtt tcggtaaaga gaaagagtac
     3121 agccgtggaa tggacgaaat gcagtgggta gaaaaactct acaaagattg tcgccgtgaa
     3181 aacagaggta aatttgaaat gccggagttt gctgaatttt ggcaaaaagg ctatgtgctg
     3241 ttcccagagg gcaaaccttg ggttcgccac gccgatttcc gtgaagatcc ggaattgcac
     3301 gcacttggca caccgtccgg ctttatcgaa atttacagca acaaaatcgc ctctttcggc
     3361 tatgacgatt gcaaaggtca cccaatgtgg tttgagaaag ccgaacgttc acacggcggt
     3421 aaaaattccg acaaattccc gtactggttg caatcagttc acccggacaa acgcttacac
     3481 tctcaacttt gtgaatcgaa agaactgcgt gaaacttaca gcgtgcaagg gcgtgaaccg
     3541 ctttacatta acccacaaga tgccgccaaa cacggcattc aagacggaga tttagtgcga
     3601 gtgtttaacg accgtgggca agcgattgtg ggggcggtgc tttccgacaa cttcccgacc
     3661 ggcgtagtgc gtttacaaga aggggcttgg tattcacccc ttgacgaaag cgtgggggcg
     3721 attgacacct atggcgaccc gaacacaatg accctcgaca tcggcacgtc caagttggca
     3781 caagcggttt ccgccaacac ttgcttggtg aacatcgaga aatttatcgg caatgccccg
     3841 gctccgaatg gctttaacgg tgcgattgag gtaacggctt aatgacgttg gcaatcagtc
     3901 gtgaagaacg gcaatttatc tatggctggt ttaacgcaat gctcgcccga gaactttcgg
     3961 acgagcagtt aaatgcctta caagcgggcg aatttgacga tttttttgca tacctcagcg
     4021 aattgggttt tgccgaacag gttgcaaaat ttcaagcaga agtgaccgct tgtaggcagc
     4081 tggaatttcc tcgtctagaa ctggcggctg actttgccca actgttttta ttggaaggca
     4141 atctcagtgc cattccttac gcctccgcct atttaagcgg cgaagcgtta gcgaaaaatt
     4201 tggcggaaat ggacagactg ctgggcgaat ttgggctgca agttaatcga gaaaccaaag
     4261 agccgagcga tcacctttgc gtttatctca ccctttttga ccgcttgctt gctgaaaaac
     4321 cgttggaaac gcaacagcaa tttctgcaaa accaactgat gagctggctc cctgcgtggt
     4381 tcgccaaagc caaaaccgtc aaaactaaca ccggcgttta tccggcgttg ctaaggttgt
     4441 ttgaacaggt gttgctgaag gaacaaagat aaagttattt atttgagaat gatttgtatt
     4501 gagcgaattg agaaaggaag ttaaaatttc aacttccttt tttattggct ggatttatcc
     4561 acattattac aagcggttat ttttataaaa aaatttacaa aggagacatt aatgcaaaat
     4621 aataaaacca cctacctaaa ttggtacgat ttatgcgtgc taaccctgat cctgtttggt
     4681 gaggcaattt atacctcaac ccagcaatat ttcatcacca ccgaaatgca aggtaatttt
     4741 gaagaaaatt taaccttttc aaatgaacaa aattattggg cattactgac gcaacttgca
     4801 ttgttgctga ttgcaatggg ctatctaaaa tggcggaatt ttgatttcag ccgttgggtg
     4861 attcgtccct cttggctggc tttttttagc ggtatcgggt tgtttatctt gctctcgtta
     4921 gcgatggatc tctattttga aacattatat ggtgtttaca acctagtgta tccggagcca
     4981 ttttgggcag tattgagaga agtgaatatt tctaccgtgc tgtatgcgat tttaaacggc
     5041 ttttatgaag aaatcttttt cctcggtatt tgcttggcgg ttaaacctga atatttaaaa
     5101 tgggcggtga tttattcact gattattcgg gtgagttttc atacctatca aggaatggaa
     5161 agtgcgttag gattaggaat ttggctcggt ttaattattt atttgctcta ctcacgctca
     5221 aagcagaaaa acctatttcc attttgggtg gcacacagta ttgcggatat tttggggctg
     5281 agtttgttgg cttattttta gttaaaggtg ctacatttaa gcggcataag ttgatagagc
     5341 tgatcgtacc agtagcataa aaacattatt atttgtatgg aaaggtgctt ttaggttaca
     5401 atataaccga tagttattgg ttataactaa aaattatttt taatttaacg gagcaaatat
     5461 gaagagtatc aaaaaattaa ccctagccac tttgatttta gtgggtttaa ctgcttgtgg
     5521 tagcggtggt tcaggtagca gttctaataa tgctaaatcg aaaccacaag ttgagtt
//
LOCUS       DANLVT010000137         5460 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.137, whole genome shotgun sequence.
ACCESSION   DANLVT010000137 DANLVT010000000
VERSION     DANLVT010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5460)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5460)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5460
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.137"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(205..399)
                     /locus_tag="PXC99_002232"
     CDS             complement(205..399)
                     /locus_tag="PXC99_002232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418643.1"
                     /translation="MSLESYIQQAEEMELLEKLDFVSDLLELEKVSEIEAYRILTAHG
                     EPKPQPAQEKLIGCVDFLDD"
     gene            complement(396..1346)
                     /locus_tag="PXC99_002233"
     CDS             complement(396..1346)
                     /locus_tag="PXC99_002233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P2 family phage major capsid protein"
                     /protein_id="HDL5418644.1"
                     /translation="MSLSTFAHALKLDKQGNVILFDDSPEEQAKLISRLKQNRLFKLL
                     NLVQTKHAKGEAIGLFTPIAGTTNTESGEEREPKQALAPAQKYHCEQINIDSYIRYEK
                     IDAYNLENSLEERLNQLLDDNLLRGLLMVGWQGVSRADTSNATNNQLAQDVKKGWLQK
                     IREGKPEAVINGATIGKEQQYKSLNALIKQGLGKISPAYAMGGDMIAICGRDIIADDV
                     IQLEHNDLSENLADLLTLCQQAKGGLKAVSIPYFPSNAILITRLDNLSLYLHLNNIRR
                     KAFDTPQKDSVETFYSLNVDYIVEDFNACCLIENIEVIEE"
     gene            complement(1357..2016)
                     /locus_tag="PXC99_002234"
     CDS             complement(1357..2016)
                     /locus_tag="PXC99_002234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418645.1"
                     /translation="MTLETFNQQKAKFHEQEKAVLAIQTELDKAKNILEALQNEKAEF
                     VARQKTNLANIGTLSADEYVEIKNKNSGLQARIEYYQALIVDLENKCYAEQEILFQQQ
                     NELKQIRRIILLEKAEVLFNQFIEQNKENLAEIYTYLFYSGKFKQNKNLTDESEEQAI
                     LAYLTENIMARIEKEQPLEKTLILYSEQLASFEQKSPMALHREKFEAKPTGLAELINN
                     L"
     gene            complement(2026..2232)
                     /locus_tag="PXC99_002235"
     CDS             complement(2026..2232)
                     /locus_tag="PXC99_002235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family transcriptional regulator"
                     /protein_id="HDL5418646.1"
                     /translation="MENTPAKQRFMKIDEVSAVTTLSETQIYRKMKAGDFPQSISIGA
                     NSKVWLESEIQQWIQRKIEQHRNQ"
     gene            complement(2702..3916)
                     /locus_tag="PXC99_002236"
     CDS             complement(2702..3916)
                     /locus_tag="PXC99_002236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5418647.1"
                     /translation="MTATKKPLSDTLLKNLKYSPNAKPIADSNGLFILAQKKAKVWIY
                     SYISPKTGKRSTKNRIGSYPQMSLAEARLKRDELNTLVLQGLDPFEHLAKMQREAKEK
                     QESIQSFAYKWADWKLSKGKCKPKTMEKCLQRLENHLFPRFEGYTLEDFTLTDTINRL
                     TDLDRIMPDTLHRIAGNLIEILDYAVLCGRINFNPISVIKKAFSSVSTTHQPAIMPEE
                     LAEFMQDLQKSNRTPQIKLLVEWQLLNILRPFEAVAVQWSDIDWETKTLNIPADRMKG
                     GKNPHSVPLTKQAIAILEEMKKYNGHHKHIFTHRTDRNKPANSQTVNNAIKRLSGGKY
                     KGLLVAHGLRSIASTYLHERFTTETLVIEACLSHTNKDTVMSAYHRKNWLDRRRGIMQ
                     EWADFVEQCKSI"
     gene            complement(4119..4194)
                     /locus_tag="PXC99_002237"
     tRNA            complement(4119..4194)
                     /locus_tag="PXC99_002237"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4159..4161),aa:Ile,seq:cat)
     gene            complement(4288..5025)
                     /gene="pgeF"
                     /locus_tag="PXC99_002238"
     CDS             complement(4288..5025)
                     /gene="pgeF"
                     /locus_tag="PXC99_002238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan editing factor PgeF"
                     /protein_id="HDL5418648.1"
                     /translation="MDKIIPNWNVPKHIHALTTLRTGGVSKPPFDSFNLGDHVNDEPQ
                     DIAQNRALLVEKFQLPQAPLFLTQTHSTRVIELPYSGDNIKADAIYTNQPNQVCLVMT
                     ADCLPVLFASQDGSEIAAAHAGWRGLCDGILEATVEKFNCPPHEISAWLGPAIGPNAF
                     QVGSEVADQFCAFDPRAKEALIEDSTTSGKFLGNLYQIATQRLNKLGITAISGGEYCT
                     YSQPELFFSYRRDKQTGRMATLIWRTE"
     gene            complement(5057..5443)
                     /locus_tag="PXC99_002239"
     CDS             complement(5057..5443)
                     /locus_tag="PXC99_002239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDL5418649.1"
                     /translation="MTVIHTENAPAAIGPYVQAVDLGNMVLTSGQIPVNPETGEIPSD
                     IVQQTRQSLNNVKAIIEQAGLTVADIVKTTVFVKDLNDFAKVNAEYQAFFQENEHPNF
                     PARSCVEVARLPKDVGIEIEAIAVRR"
BASE COUNT         1333 a         1040 c         1148 g         1939 t
ORIGIN      
        1 tatatcttcg ccagtgagtt gtttaatgcg ttttgttgcc tgctctaagg tgtaccactt
       61 tctagccggt agtttatagt ttgtcattgc tgtactctca tttgatttgg ttattgtttt
      121 ttattaatga tagcaataat ttcaaagggt gcaagcggtc gttttttgtt gcaaaaatgc
      181 aaaaagcccc tttcggggct tgggttagtc atcaagaaaa tctacgcaac ctattagctt
      241 ttcttgtgcc ggttggggtt taggttcgcc gtgggcggtt aaaatgcgat aggcttcaat
      301 ttcgctgact ttctcaagtt ctaacaggtc tgaaacaaaa tcgagttttt ctaaaagctc
      361 catttcttcc gcttgttgga tatagctttc taggctcatt cttcaataac ctcaatattt
      421 tcaattaaac aacaggcgtt aaaatcttct acaatgtaat ccacattgag ggagtaaaat
      481 gtctctacgc tgtctttttg tggcgtatca aacgctttac ggcggatatt gtttaaatga
      541 agatatagcg aaaggttatc taatcgagtg attaaaatcg cattgcttgg gaagtaggga
      601 atacttaccg cttttagtcc gcctttagct tgttggcata aggttaataa gtcggctagg
      661 ttttcgctta aatcgttgtg ttcaagctga attacatcat cagcgataat atcccgccca
      721 caaatggcga tcatatctcc gcccattgca tacgctgggc taattttgcc taatccctgc
      781 ttaatcagag catttaggct tttgtattgt tgctctttgc ctatggttgc tccattaatt
      841 accgcttcgg gcttgccctc tctgattttt tgtagccagc cttttttcac gtcttgggcg
      901 agttggttgt ttgtcgcgtt tgatgtatct gcacggctta cgccttgcca gccaaccatt
      961 aaaagccctc ttagaaggtt gtcatcaagt aactgattta agcgttcttc taagctgttt
     1021 tcgaggttgt aagcatcgat tttttcatag cgaatatagc tatcaatgtt gatttgttcg
     1081 cagtggtatt tttgagcggg tgcaagggct tgttttggct ctcgttcctc tccgctttcg
     1141 gtgttggttg tgccggctat cggtgtgaat agcccaatcg cttcgccctt tgcgtgcttg
     1201 gtttgcacta aattcaataa tttaaaaagg cgattttgtt ttaagcggct aattagtttt
     1261 gcctgttctt cggggctatc gtcaaataaa ataacgttac cttgtttatc tagttttaat
     1321 gcgtgggcga aagtggataa actcattttt tacctcttat aagttattaa ttaattcagc
     1381 taagccggta ggttttgctt caaatttttc acggtgtaat gccattggcg atttttgttc
     1441 aaaacttgct aactgttcag aataaagaat taatgttttt tcaagtggct gttccttttc
     1501 aattctagcc attatatttt ctgttagata tgccagaata gcttgctctt cactttcatc
     1561 tgtgaggttt ttattttgtt tgaattttcc actgtagaat aagtaagtat aaatttctgc
     1621 taaattttct ttattttgtt caataaattg attaaataat acttctgctt tttctaataa
     1681 aattatacgt ctgatttgtt ttagttcatt ctgctgttgg aataatattt cttgctctgc
     1741 gtagcattta ttttctaaat caacaatcaa cgcttgataa tattctatgc gtgcttgtaa
     1801 accactattt ttatttttga tttcaacata ttcatctgct gaaagcgtgc cgatattggc
     1861 taaattcgtt ttttgccgtg cgacaaattc cgctttttcg ttttgcaatg cctcaagaat
     1921 atttttcgct ttgtctaatt cggtctgaat agctaaaacg gctttttctt gttcgtggaa
     1981 tttagctttt tgttggttaa atgtttcaag tgtcataatt tgcccttatt ggttgcggtg
     2041 ttgttcaatt ttgcgttgaa tccattgctg gatttcactt tctagccata ctttgctatt
     2101 tgccccaata ctgatacttt ggggaaaatc gccggctttc attttgcgat aaatctgcgt
     2161 ttctgaaagc gtagttacgg ctgaaacttc atctattttc ataaatcgct gttttgctgg
     2221 tgtgttctcc attttgtttt actccgtaaa aatttgcttt ggcgtgctat tgcctgctaa
     2281 cgtgtgaaag aataaatcat cttggatttt ttgctatttg ttagggctgt gaaaggagat
     2341 tttacagatt agaggggctt aattctgatt tggaaaactt gcaagcggtt atttttctct
     2401 gattttttgc aagttttcag cggttctttc atcgttctgt catcgagttt ttaaaagtgg
     2461 tgtttctgcc tgcgtaaatt tgcgttttct tgcgtaaaat tgcgtaataa aaaacggcta
     2521 tatgaaagtt tttcacgcta tacggggcaa tgtttgggct taattttgca tttgcgtaga
     2581 aatcgagact ttaagtgtgc gggcgaggcg tgggatagac ggcacgggct gggagctgat
     2641 aggaaaaaat gaaaattttt catcaagcaa aaagaaaggc ggattgctcc gcctttgtca
     2701 tttaaatgct cttgcattgt tctacaaaat ccgcccattc ctgcattatt ccacgtctgc
     2761 ggtctagcca gtttttacgg tggtatgcac tcattacggt gtctttgttc gtgtgggata
     2821 aacaagcctc aattactagc gtttcagtag taaaacgttc gtgtaaatag gtgctggcaa
     2881 tgcttcttaa accgtgagcc actaaaagcc ctttatattt tccaccgctt aagcgtttta
     2941 ttgcattatt cacggtttgg ctattagccg gtttgtttcg gtctgttcgg tgtgtaaaaa
     3001 tatgtttatg gtgtccgtta tatttcttca tttcctctag gattgcgata gcttgttttg
     3061 ttagcggtac agaatgcgga ttttttccgc ctttcattct atctgccgga atgttgagcg
     3121 tcttagtttc ccaatctata tcgctccatt gcaccgctac ggcttcaaac ggtctaagaa
     3181 tattcaagag ttgccattca actaataatt taatttgagg cgttctattt gatttctgca
     3241 agtcttgcat aaattcggct aactcttcgg gcattattgc tggctggtgt gtcgtgctta
     3301 cgctggaaaa cgccttttta atgacgctga ttgggttaaa attaattctc ccacacaata
     3361 ccgcataatc aagaatttct attaaattcc ctgctattct gtgcaaagtg tcgggcatta
     3421 tccgatctaa gtccgttaag cggttgattg tatcggttaa ggtaaaatct tccagcgtat
     3481 agccttcaaa acgtgggaat aaatgatttt ctaaccgctg taagcatttt tccattgttt
     3541 taggcttgca ttttcccttt gatagcttcc aatcagccca tttataggcg aaagattgaa
     3601 tagattcttg cttttcctta gcttctcttt gcattttggc taaatgctcg aaagggtcta
     3661 agccttgtaa aacaagggta tttagttcgt ctctctttaa gcgtgcttcg gctaagctca
     3721 tttgcggata gctaccgatt ctattttttg tgcttcgctt gcctgttttg gggctgatat
     3781 agctataaat ccatactttc gcttttttct gtgcaagaat aaatagcccg ttgctgtctg
     3841 cgataggctt cgcatttggg gaatatttga gattttttag taatgtgtct gaaagtggtt
     3901 ttttagttgc agtcatttct tctaatcctt gatatataag ggtttatcga agtttatgat
     3961 ccctaaattt tcccgttttc aaaataggga tcattttagg gatcataaac actaagatac
     4021 aatgcaacta aagaagacaa taagagacta taaaagaatc taagttcttg attttatagt
     4081 aaatttgaga caatgaaaga caatatgcaa cgcttagatg gtccccccag ccggacttga
     4141 accagcgacc aagcgattat gagtcgcctg ctctaaccac tgagctatgg ggggatttga
     4201 aaagtggttg gaattataga gaaaaaccga gtagtcgtct agaggcagaa gattactcgg
     4261 ttaattattg aacgagagaa aatagggtta ttctgttcgc caaattaagg ttgccattcg
     4321 cccggtttgt ttgtctcggc ggtaggaaaa aaacagttct ggttggctgt aggtgcaata
     4381 ttcaccgcct gaaatggcgg taatgcctaa tttattcaga cgttgggtgg caatttggta
     4441 aagatttcct aaaaatttac cgcttgtagt gctgtcttca ataagggctt ctttcgctct
     4501 tgggtcaaaa gcacagaatt ggtctgccac ttcactcccg acttgaaaag cattcggtcc
     4561 gatagccggc cctagccaag ctgatatttc gtgtggcggg cagttgaatt tctctaccgt
     4621 cgcctctaat atgccatcgc ataacccacg ccagccggcg tgtgccgccg caatttccga
     4681 cccgtcttgg ctggcaaata ataccggcaa acaatctgca gtcatcacta agcagacttg
     4741 gtttggttga ttggtgtaaa tcgcatcggc tttaatatta tcacctgaat agggaagttc
     4801 aatcactcgg gtgctgtgag tttgggttaa aaacagcgga gcttgtggta attgaaattt
     4861 ctcaaccaat aaagcacgat tttgagcgat atcttgtggc tcgtcattaa cgtgatcacc
     4921 taagttgaaa ctgtcaaaag gcggtttgct tactccgcct gttcttaagg tcgtcagtgc
     4981 gtgaatatgt ttaggcacat tccaatttgg aataatttta tccatttgca aaaaatctca
     5041 agaaaatgac cgcttgttat cggcgtactg caatcgcttc gatctcaatg ccaacatctt
     5101 ttggtaaacg agccacttct acgcaagaac gagccggaaa attagggtgt tcgttttctt
     5161 ggaagaaggc ttggtattcc gcatttacct ttgcgaagtc gttaagatct ttgacaaata
     5221 cggtggtctt tacaatatcg gcaacggtta agccggcttg ttcgataatg gctttcacgt
     5281 tgttcagaga ttggcgggtt tgttgcacaa tatcactcgg gatttcgccg gtttcaggat
     5341 tcacgggaat ttgcccagaa gttaaaacca tattgcctaa atcaactgct tgcacataag
     5401 gcccaatcgc tgccggtgca ttttctgtgt ggataactgt catcttgtgt tcctcttaat
//
LOCUS       DANLVT010000138         5435 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.138, whole genome shotgun sequence.
ACCESSION   DANLVT010000138 DANLVT010000000
VERSION     DANLVT010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5435)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5435)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5435
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.138"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(267..878)
                     /locus_tag="PXC99_002240"
     CDS             complement(267..878)
                     /locus_tag="PXC99_002240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL5418650.1"
                     /translation="MQLTFNDFQNYYNGKGDLTMFSFYGKKTWENGIYVGIDGSIGRA
                     NNKLSHQSQTIKLARNVYSLGLTVGKTLEVASFNLQPSFGMRYHHLTSANAQLENTKF
                     ETDRVDLLAIQAGLALNKTFIFNELKVKPELGSYFVDASHGTLKTKLNEFSLNQNIGR
                     YFKQEVGITLHYKGVSSSVHAGFTKGNTLQEQKFISLKVGYEW"
     gene            complement(927..1742)
                     /gene="cysE"
                     /locus_tag="PXC99_002241"
     CDS             complement(927..1742)
                     /gene="cysE"
                     /locus_tag="PXC99_002241"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HDL5418651.1"
                     /translation="MQQSEINQIWQAIRDEAKELANCEPMLASFFHATILKHHNLGDA
                     LSYILANKLENPIMPAIALKEIIEEAYRAEPQIIASAACDINAVRTRDPAVDKWSTPL
                     LYLKGFHALQSYRVTHYLWNQGRKALAVYLQNEISVAFDVDIHPAAKVGCGIMFDHAT
                     GIVVGETSVIENDVSILQGVTLGGTGKENGDRHPKIREGVMIGAGAKILGNIEIGRYS
                     KIGANSVVLQPVPDHATAAGVPARIIGKSSEQKPAFDMNQYFEDEQGLFGDGI"
     gene            complement(1758..2768)
                     /gene="gpsA"
                     /locus_tag="PXC99_002242"
     CDS             complement(1758..2768)
                     /gene="gpsA"
                     /locus_tag="PXC99_002242"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HDL5418652.1"
                     /translation="MSEIYSAPITVLGAGSYGTALAIALSRNGHKTYLWGHNPDKMAV
                     LASERMNQDFLPDIVFPEALEIVADLATAVQKSKDLLIVVPSHVFSEVLAQIKPFLSQ
                     DHRIMWATKGLERDTGRLLQTVAKEILGEIYPLAVLSGPTFAKELAAGLPTAISLAST
                     DPVFADQMQKRSHCSKAFRVYLNNDIIGVQLGGAIKNVIAIGAGISDGMGFGANARTA
                     LITRGLAEISRLGVSLGADPKTFTGMAGLGDLVLTCTDNQSRNRRFGLALGQGKSAEV
                     AIAEIGQVVEGFYNTKEAYLLAQTQGVEMPIVEQIYQMLFCGKQASDVVKTLLGRERK
                     GE"
     gene            complement(2875..3375)
                     /gene="secB"
                     /locus_tag="PXC99_002243"
     CDS             complement(2875..3375)
                     /gene="secB"
                     /locus_tag="PXC99_002243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HDL5418653.1"
                     /translation="MSEENQVASTEEATQTPFELQIQRIYVKDVSFEAPNLPTIFQQE
                     WKPQLGFELDTETKEIGEDLYEVTLHITVQTTLEDSNDVAFICEVKQAGVFTIKGLEG
                     IQLAHCLASQCPNVLYPYARELISSLVNRGTFPALNLSPVNFDALFMDYLQRQEESAE
                     EPALAN"
     gene            complement(3396..3848)
                     /locus_tag="PXC99_002244"
     CDS             complement(3396..3848)
                     /locus_tag="PXC99_002244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDL5418654.1"
                     /translation="MEQLTFAQQLEQFFANHTLMVFAWVALLIAVIFSFYKSATQKYK
                     IVDNAQATQLINKEEAVVVDLRSDEEFRAGHIIDSIHVLPSDIKAAKINQIDKYKARP
                     VIVVDTNDFTSGGVAADLAKQGFSRVYVLKEGIGGWRAASLPTIKKHK"
     gene            complement(3964..5262)
                     /gene="tig"
                     /locus_tag="PXC99_002245"
     CDS             complement(3964..5262)
                     /gene="tig"
                     /locus_tag="PXC99_002245"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HDL5418655.1"
                     /translation="MSFSIETLEGLKRRVTINVPADKIEAAYKEQLKGYAKNARVDGF
                     RKGKVPHSIIEQRFGIAARQDVLSDEMQRAFFEAVIAEKINLAGRPTFTPNNYQPGQD
                     FSFTAEFEVFPEVELKGLENIEVEKPVVEIADADLDKMVDVLRKQQATWSESQEAAKA
                     ESRVTIDFVGSVDGEEFEGGKASDFVLFMGQGRMIPGFEDGIVGRKAGEQFDIDVTFP
                     EEYHAENLKGKAAKFAITLKKVEEMVLPELTEEFVKKFGNAKSVEELRAEIKKNMQRE
                     LKNAVTSRVKTQVINGLIAQNDVEVPAAAVEEEINVLRQQAVQRFGGKPEMAAQLPAE
                     LFEAEAKRRVQVGLLLSSIIGSNELKVDEKRVEEMIADIASAYEQPAEVVAHYAKNRQ
                     LTENIRNVVLEEQAVDAVLAKAKVTEKTMSFDEVMSQQAQ"
BASE COUNT         1544 a         1205 c          960 g         1726 t
ORIGIN      
        1 gatccgaata attgtacaca aaatagccta agcaataagg cactttgaat tttaggagta
       61 tatttaggag tacaaataaa atttgaatta accaaaaccc ttatttatca atgcttgaag
      121 tgatacaatt cagatgaccc cagcccaaat tataatccta tacggttcaa ccgataccta
      181 aaaagccttg aaaatcaatg tttcaaggct tttttagtaa cattatgttt gaaccgattc
      241 aagtgtagct tcaggttaca taaagcttac cactcatatc caactttgag tgaaatgaat
      301 ttttgttctt gtaatgtatt tccttttgta aagccagcat gtaccgaact tgatacccct
      361 ttatagtgga gtgtaatccc tacttcttgc ttaaaataac ggcctatatt ttgatttaag
      421 gaaaattcat ttaacttagt tttaagtgtt ccgtggcttg catcaacaaa atagcttcct
      481 aattcaggtt ttacctttaa ttcattaaat ataaaagttt tatttaatgc taaaccagct
      541 tgaatggcca aaagatctac cctatcagtc tcaaattttg tgttctctaa ttgggcattt
      601 gcagatgtta aatgatgata gcgcatacca aatgacggtt gtaggttaaa acttgcaact
      661 tccaacgttt tacctaccgt taatcctaaa gaatatacat ttctggctag ttttatcgtc
      721 tggctttgat ggcttaattt gttattcgca cgcccaatgc taccatcaat ccctacataa
      781 atgccatttt cccatgtttt cttaccataa aaagaaaaca tagttaaatc ccctttacca
      841 ttatagtagt tctgaaaatc attaaaggtt aattgcaact tgtacttagc aatgtctaaa
      901 tcataaatta aaggaataac tcttacctaa atcccatcac caaacaaacc ttgctcatct
      961 tcaaagtatt gattcatatc aaaagccggt ttttgttcag aggatttgcc gataatgcga
     1021 gccggtacac ctgctgctgt ggcgtgatca ggcacaggtt gtagcaccac tgaatttgcc
     1081 ccgattttag aatagcgtcc gatttcaata ttaccgagaa tttttgcacc ggctccaatc
     1141 atcacgcctt cacggatttt cgggtggcgg tcgccatttt ctttccctgt accgcctagt
     1201 gttacacctt gtaaaatcga gacatcattt tcgatcacag aggtttcacc caccacaata
     1261 ccggtggcgt ggtcaaacat aattccgcaa ccgacctttg ccgcaggatg aatatccaca
     1321 tcaaaggcaa cagaaatttc attttgtaaa taaaccgcta atgctttcct gccttgattc
     1381 caaagataat gcgtcacccg atagctttgt aaagcgtgga agccttttaa gtacagcaga
     1441 ggtgtactcc atttgtccac cgcaggatct ctagttctga ccgcattaat atcacaagct
     1501 gcactagcaa taatttgtgg ctctgctcga taagcttcct caataatttc ttttaaggcg
     1561 attgccggca taatcgggtt ttctaactta ttcgccaaaa tataacttaa cgcatcgcct
     1621 agattatggt gttttaaaat ggtagcgtgg aaaaaacttg ctaacatagg ttcacaattc
     1681 gccagctctt tggcttcatc tcgaattgct tgccaaatct gattaatttc actctgctgc
     1741 attttattct cctttcttta ttcgcctttt cgttcacgcc ccaacaaggt tttcaccaca
     1801 tccgaagcct gtttgccaca aaataacatt tggtaaattt gttctacaat cggcatttca
     1861 acgccctgtg tttgagcgag caaataggct tctttggtat tataaaatcc ttctaccact
     1921 tgaccgattt ccgctatcgc gacttctgcc gattttcctt gccctaacgc caaaccaaat
     1981 cggcggtttc gggattggtt atcggtacac gtcagcacta aatctccaag ccccgccatt
     2041 ccggtaaagg ttttcggatc agccccgagc gaaacaccca aacggctaat ctccgccagc
     2101 cctcgagtaa tcaaggcggt acgagcattc gccccgaatc ccattccgtc tgaaataccg
     2161 gcaccaattg caatcacatt tttaatagcc ccaccgagtt gcacaccgat aatatcattg
     2221 ttgaggtaaa ctcggaacgc tttggaacag tgactccgtt tttgcatttg atcggcaaaa
     2281 acaggatcag ttgaggcaag cgaaatcgct gttggcaagc ctgccgccag ttctttggca
     2341 aaagtcggac cggaaagcac cgcaagcggg taaatttccc ccaaaatttc cttagctacc
     2401 gtttgcaaca aacgcccggt atctcgctcc agccctttgg ttgcccacat tatacggtga
     2461 tcttgggaca aaaaaggctt gatttgagcc aatacttcag agaatacatg acttggcacc
     2521 acaatcagca gatctttcga tttttgtacc gctgtagcaa gatctgcgac aatttctaag
     2581 gcttccggga atacaatatc aggcagaaaa tcttggttca ttcgctctga tgccaaaacg
     2641 gccattttgt cgggattatg cccccataaa taggttttgt gaccatttcg agaaagggca
     2701 atggctaaag ctgttccata agaacctgca cctaataccg tgattggggc agaatagatt
     2761 tcactcatat ttcctctgtt cggcttattt agaaaattgc aaaaaatagt agaaaaaata
     2821 accgcttgta aaaaaatagg tatgccttgc atacctattt tctatctaaa atgcttagtt
     2881 cgctaaagcc ggctcttctg cactttcttc ttggcgttgg agataatcca taaataacgc
     2941 atcaaagttt accggtgaga gatttaatgc cgggaatgta ccacgattca caaggcttga
     3001 gattagctca cgagcataag gataaagcac attcggacat tgtgaagcta agcagtgagc
     3061 aagttgaatg ccttctaaac ctttaatagt aaacacacct gcttgtttta cttcacaaat
     3121 gaaagcgaca tcattgctgt cttctaacgt agtttgcacc gtaatgtgta aggtaacttc
     3181 gtataaatct tcaccaattt ctttggtttc agtatctaac tcaaagccta attgtggttt
     3241 ccactcttgt tggaaaatag tcggtaaatt tggtgcttca aatgaaacat cttttacata
     3301 aatgcgttga atttgaagct caaaaggggt ttgtgtagct tcttctgttg atgcaacttg
     3361 attttcttct gacataaaat ttccttaata atagattatt tatgtttttt aatagttggt
     3421 aggcttgctg cacgccagcc gccaatccct tcttttaata cataaactct gctaaagcct
     3481 tgtttagcaa gatctgccgc aacaccacct gaagtgaagt cattagtgtc tactacaatt
     3541 accgggcgag ctttgtattt atcaatctga ttgattttag ctgctttaat gtctgacggt
     3601 aacacgtgaa tgctatcaat aatatgaccg gcacggaact cttcatcaga acgtaaatca
     3661 accactactg cctcttcttt attaatcagc tgtgtagcct gtgcgttatc gacaatttta
     3721 tatttttgcg ttgcactttt ataaaagcta aaaattaccg caatcaataa tgcaacccaa
     3781 gcaaacacca tcaaggtatg attggcaaaa aattgctcta attgttgagc aaaagttagt
     3841 tgttccataa ttcaatttcc ttaacatcaa aaaataagcg gtcgttttga tgcaaattta
     3901 tcactaaatt taaccgcttg taaaagtaat aaaaggtgag caaaagccca ccttataagg
     3961 aaattattga gcttgttgtg acattacttc gtcaaatgac attgtttttt cagtcacttt
     4021 cgctttcgct agcactgcat caaccgcttg ctcttctaat accacattgc ggatattttc
     4081 agttaattga cggtttttcg catagtgagc aaccacttca gccggttgtt cgtaagctga
     4141 agcgatatct gcgatcatct cttcaacacg tttttcatct acttttaatt cgttagaacc
     4201 gatgattgaa gataataata agcccacttg aacacggcgt ttagcttctg cttcaaataa
     4261 ttcagccggt aattgagctg ccatttcagg cttaccacca aaacgttgca ccgcttgttg
     4321 gcgtaatacg ttgatttctt cttcaaccgc agcagccggc acttcaacat cattttgagc
     4381 aattaagccg ttgattactt gagttttcac acgtgaagtg actgcatttt taagttcacg
     4441 ttgcatattt ttcttaattt ctgcgcgtaa ttcttccact gattttgcat taccgaattt
     4501 tttcacaaac tcttcggtta attccggtaa taccatctct tctacttttt tcaaggtaat
     4561 tgcaaatttc gctgctttgc cttttaagtt ttcagcgtgg tattcttctg ggaaagtcac
     4621 atcaatgtcg aattgctcac ccgctttacg acctacgatt ccgtcttcaa accccgggat
     4681 catacgacct tgccccataa ataacacgaa gtctgatgct ttaccgcctt cgaattcttc
     4741 accatctact gaaccaacga aatcaatagt tacacgagat tcggcttttg cagcctcttg
     4801 gctttctgac caagtcgctt gttgtttgcg taatacatct accattttgt ctaaatcagc
     4861 gtctgcgatt tcaacaaccg gtttttctac ttcgatattc tctaaacctt ttaattccac
     4921 ttctgggaat acttcaaatt ccgcagtaaa gctgaagtct tgacctggtt ggtagttgtt
     4981 tggcgtgaaa gtagggcgac ctgccaagtt gattttttca gcaatgacgg cttcaaagaa
     5041 tgcacgttgc atttcatcag ataacacatc ttgacgggct gcaataccaa aacgttgttc
     5101 gataattgag tgtggcactt tacctttacg gaagccatct acacgagcat ttttcgcata
     5161 gccttttaat tgttctttgt atgctgcttc gattttatca gctggtacgt taatagtaac
     5221 acggcgtttt aagccttcta atgtttcaat tgaaaatgac attcttaaac ctcggtttag
     5281 ggatataaaa aagatataca aatagacggt tattgtagcg ttctatcaag aaactgtcga
     5341 gaagaaactc attcgcaaat aaacagtttt gtaaaaaatc cctaaaatct gactgcttgt
     5401 caatgggctt gcctacaagc ggtctttttt caccg
//
LOCUS       DANLVT010000139         5298 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.139, whole genome shotgun sequence.
ACCESSION   DANLVT010000139 DANLVT010000000
VERSION     DANLVT010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5298)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5298)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5298
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.139"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..636
                     /locus_tag="PXC99_002246"
     CDS             <1..636
                     /locus_tag="PXC99_002246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase family
                     protein"
                     /protein_id="HDL5418656.1"
                     /translation="TTVFPKQVHFADYLNYAIFADFLEKNQVNYNLNIPNELSSFANT
                     LWQEKKIRLLLNPQGSMREISTQELSELLSMIDKRYVQHISCLLTNTTNSAEYLSKIK
                     APFEISLAPNSDILGYCALVNSADIVIAVDGGGVHISCALGKKLLSFYANHPANIARW
                     YPKPKKDVETFMVIADKWTEDNNDTRGFSLVAPAKWLNHQFAKLIEKYTAC"
     gene            complement(691..903)
                     /gene="rpmE"
                     /locus_tag="PXC99_002247"
     CDS             complement(691..903)
                     /gene="rpmE"
                     /locus_tag="PXC99_002247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HDL5418657.1"
                     /translation="MKQGIHPEYKEITATCSCGNVVKTRSTVGKDLNLDVCGNCHPFY
                     TGKQRVVDTGGRVERFNKRFSIPSSK"
     gene            1266..3272
                     /gene="tkt"
                     /locus_tag="PXC99_002248"
     CDS             1266..3272
                     /gene="tkt"
                     /locus_tag="PXC99_002248"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HDL5418658.1"
                     /translation="MTERKVLANAIRFLSMDAVQKANSGHPGAPMGMADIAEVLWRDF
                     LKHNPTNPKWADRDRFVLSNGHGSMLIYSLLHLTGYDLSIEDLKQFRQLHSKTPGHPE
                     YGYAPGVETTTGPLGQGITNAVGIAIAEKTLAAQFNREGHKIVDHYTYAFLGDGCLME
                     GISHEACSLAGTLGLGKLIAFYDDNNISIDGHVDGWFTDDTAQRFESYGWQVIRNVDG
                     HNPEQIKFAIENAQAETERPTLIICKTIIGYGSPNKSNSHDCHGAPLGDAEIQAAREF
                     LGWEHAPFVIPAEIYTEWDAKAKGTLAEKDWNAKFAAYEAAYPELAAEFKRRYAGELP
                     ANWEAESKAFIEKLQANPATIASRKASQNAIEAYAPILPEFLGGSADLASSNLTLWSG
                     SKPIRAEHNVDGNYINYGVREFGMSAIMNGIALHGGFIPYGATFLMFYEYAHNAVRMA
                     ALMKQRALFVYTHDSIGLGEDGPTHQPVEQTASLRQIPNLETWRPADQVESAVAWKAA
                     VERKDGPTALIFTRQNLAQQQRTAEQLANISRGGYILRECCEKGSCPDLILIATGSEV
                     DLAMKAADVLDAEGVKVRVVSMPSTNVFDKQDEAYRESVLPRSVTKRVAIEAQLADFW
                     YKYVGFDGRIVGMNSFGESAPADQLFKLFGFTVENVVAKAKEIL"
     gene            complement(3398..4468)
                     /locus_tag="PXC99_002249"
     CDS             complement(3398..4468)
                     /locus_tag="PXC99_002249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HDL5418659.1"
                     /translation="MNEIIFSLEPQDNARLQSLCGAFDEHLALIEKSFNLIIARTGFN
                     FTIQSEDDNHYSATLVQNSVKLIKQLYNETAPIKGKIKELDLEDIHLAIQESRMLLQN
                     QWQAGSQGEIAIKTKRGVIKPRSEHQQAYLRNILSHDISFGIGPAGTGKTFLAVAAAV
                     ESLERQEIRRILLTRPAVEAGEKLGFLPGDLGQKIEPYLRPLYDALFEMLGFEKAQKL
                     MERGVIEIAPLAYMRGRTLNDAFIILDESQNTTTEQMKMFLTRIGFNSKAVITGDITQ
                     VDLPRSQKSGLKHAMEVLKEVPELSFNFFDSKDIVRHPVVAKIVQAYDAWEAVDEERK
                     EQRKLEKLALEQEKILAQAEML"
     gene            complement(4483..5208)
                     /gene="fadR"
                     /locus_tag="PXC99_002250"
     CDS             complement(4483..5208)
                     /gene="fadR"
                     /locus_tag="PXC99_002250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid metabolism transcriptional regulator
                     FadR"
                     /protein_id="HDL5418660.1"
                     /translation="MGHSDILKAQSPAALAEEYIVKSIWNNHFPAGSDLPAERELAER
                     IGVTRTTLREVLQRLAREGWLSIQHGKPTRVNDIWETSGPNIIGTIIKLDKSYLPVVI
                     ANVVSLRTRMAEAYIPEAIYLAPEESAKLFDGLDELENTAAAYAEFDYKLFRQFTFLA
                     NKPVYALILNSFKSMYHQVAKIFFADENNRQLTLSFYRSLLCTCLAKDSEKAAACMAK
                     NRQSSGEIWQKLSANIPESFGQL"
BASE COUNT         1594 a         1103 c         1026 g         1575 t
ORIGIN      
        1 accactgtct ttccaaagca ggttcatttt gctgactatc tcaactatgc tatttttgct
       61 gattttttag aaaaaaatca ggtcaattat aatttaaaca ttcctaatga actaagcagt
      121 tttgcaaata cgctatggca agagaagaaa attcgattac tattgaatcc tcaaggtagt
      181 atgcgtgaaa tttctactca agaattatca gagctattat ctatgattga taaaagatat
      241 gttcaacata ttagttgttt gctgaccaat acaaccaata gtgccgaata tttgtcgaaa
      301 attaaagccc catttgaaat aagcctagca cctaatagtg atattttagg ttattgtgca
      361 ttagtaaact ctgctgatat tgtaattgca gttgatggag gtggtgtcca tatttcttgt
      421 gcattaggca agaaattgct ctcattttat gccaatcatc cagctaatat tgcacgctgg
      481 tatccaaaac ctaagaaaga tgttgaaact tttatggtga tcgcagataa atggaccgag
      541 gataataatg atactcgagg tttttctctg gtagctcctg caaaatggtt aaatcaccaa
      601 tttgcaaaat tgatagaaaa atacaccgct tgttaattcg atatataaga aaaacaaaac
      661 cccgcattag cggggtttgc aataatcaaa ttattttgag cttgggatgc tgaaacgttt
      721 gttaaagcgt tcaacacgac caccggtgtc aacaacacgt tgtttaccag tatagaacgg
      781 gtggcagttg ccacatacgt ctaagtttaa atctttaccc actgttgagc gagttttaac
      841 tacattaccg caagagcaag ttgccgtaat ttctttatat tctgggtgaa taccttgttt
      901 cattggggaa cctcataaga agccatatcg ccgcctatct tgttagaatc tctaccgctg
      961 ataggtacca tatgtaatta ataaaaatgt tgagcaaatg ctcaacgcca aaaagagtgc
     1021 gtattttaga taaatttgtt gcctagatca actactaaac attcgcttta tcaagaaaat
     1081 attgtattag gaaaaaaccg tctattaaaa tcaaatccaa tcaaaacaaa tcacaattta
     1141 atcatttttt gtgatacaga tcacatttct catttccatt tttgagtttt tctagcaaaa
     1201 tagtgtagaa tccaattcga tatcctttcc attttatata acattctcga ttaggagtaa
     1261 cacaaatgac agaacgtaaa gtgctagcga atgcaattcg ttttttaagt atggatgctg
     1321 tacaaaaagc taactcaggc cacccaggcg caccaatggg tatggctgat attgcagaag
     1381 ttttatggcg tgatttttta aaacacaatc caactaatcc taaatgggca gatcgtgacc
     1441 gttttgttct gtctaacgga cacggttcaa tgttaatcta tagcttactt catttaaccg
     1501 gctatgatct ctctattgaa gatttaaaac agttccgtca gttacattct aaaacacctg
     1561 gtcaccctga atatggttat gcaccgggtg ttgaaaccac cacaggcccg ttaggtcaag
     1621 gtattaccaa tgcggtcggt atagcgattg cggaaaaaac ccttgcagca caatttaacc
     1681 gtgaaggtca taaaattgtc gatcactaca cttacgcttt cttaggcgat ggctgtttaa
     1741 tggaaggtat ctcacacgaa gcttgctctc tcgccggtac attaggctta ggcaaactga
     1801 ttgctttcta cgatgataac aatatctcta tcgacggcca cgttgatggt tggttcactg
     1861 atgataccgc acaacgcttt gagtcttatg gctggcaagt tatccgtaat gtcgatggcc
     1921 ataacccaga acaaatcaaa tttgcgattg aaaatgcaca agccgaaacc gagcgtccaa
     1981 ctttaattat ttgtaaaacc attatcggct atggttcacc aaataaatca aactctcacg
     2041 attgccacgg tgcgccattg ggtgatgctg aaatccaagc cgctcgtgaa tttttaggtt
     2101 gggaacatgc cccatttgtg attccagctg aaatttatac agagtgggat gcaaaagcaa
     2161 aaggtacatt agcagaaaaa gattggaacg ctaaatttgc tgcttatgaa gcggcatacc
     2221 ctgaactagc cgctgaattt aaacgccgtt acgcaggcga attaccggct aactgggaag
     2281 ctgaaagcaa agcttttatt gaaaaattac aagcaaatcc ggcaaccatt gcaagccgta
     2341 aagcatcaca aaatgcaatc gaagcttacg cgccaatctt acctgaattc ctcggcggct
     2401 cagctgactt agcaagctct aacttaacct tatggtctgg ctcaaaaccg attcgtgcgg
     2461 aacacaatgt agatggtaac tacatcaact acggcgtgcg tgaattcggt atgtctgcga
     2521 ttatgaacgg gattgcccta cacggtggtt tcattcctta cggtgcaacc ttcttaatgt
     2581 tctacgaata tgcacacaat gcggtgcgta tggcagcctt aatgaagcaa cgtgccttat
     2641 ttgtttatac acacgactcc atcggtttag gtgaagacgg cccgacccac caaccggtag
     2701 aacaaactgc ttcattacgc caaattccaa acttagaaac ctggcgtccg gcagaccaag
     2761 tagaatctgc tgttgcttgg aaagcggcgg tagaacgtaa agacggcccg acagcactaa
     2821 tctttacccg ccaaaatctg gctcaacaac aacgtactgc ggagcaatta gcgaacatct
     2881 ctcgtggtgg ctatatcttg cgtgaatgtt gcgaaaaagg cagttgcccg gatttaatct
     2941 taattgcaac cggttctgaa gtagatttag caatgaaagc cgctgatgtg ttagatgcag
     3001 aaggcgtgaa agtgcgtgta gtttcaatgc caagcaccaa cgtgtttgac aaacaagatg
     3061 aagcctatcg tgaatcggta ttaccacgtt cagtcactaa acgtgtggcg attgaagctc
     3121 aattagctga cttctggtat aaatatgtcg gctttgatgg tcgaattgta ggtatgaata
     3181 gctttggtga atccgcacca gcagatcaat tattcaaact cttcggcttt accgttgaaa
     3241 acgtggttgc taaagcaaaa gaaatcttat aatgaaacaa taagataaag aaaagcggga
     3301 attaacttcc cgcttttttg ttgaacaact gttatgataa gcggtgaaat ttcagcgatt
     3361 ttttgcaaaa aattagcgaa atatgaccgc ttgtaagcta taacatttca gcttgagcaa
     3421 gaattttttc ttgctctaaa gctaattttt ccagttttcg ctgttcttta cgctcttcat
     3481 caaccgcttc ccacgcatca taggcttgca caattttggc aaccacaggg tggcggacaa
     3541 tatctttgct gtcaaagaaa ttaaagctga gttccggcac ttcttttagc acttccattg
     3601 cgtgttttaa gcctgatttt tggctacggg gcaaatccac ttgggtaata tcgccggtaa
     3661 tcaccgcttt ggaattaaag ccaatacggg ttaagaacat tttcatttgc tcggtagtcg
     3721 tgttttggct ttcatctaaa atgatgaacg catcgtttaa agtacgccct cgcatataag
     3781 caagtggggc aatttcaatc acaccacgtt ccatcaactt ttgagctttt tcaaagccaa
     3841 gcatttcaaa cagggcatca tataacgggc gtaagtaagg ctcaattttt tgccctaaat
     3901 cgccgggtaa aaaaccgagc ttttcaccgg cttccaccgc cggacgggta agtaaaatac
     3961 ggcggatttc ttggcgttca agcgattcca ccgctgccgc taccgctaaa aaggttttgc
     4021 ctgtgccagc aggcccgata ccaaaactga tgtcgtggct taatatattt cgtaaatagg
     4081 cttgttgatg ttcgctacga ggtttaatca cccctcgctt ggttttaatc gctatttcgc
     4141 cttgcgagcc ggcttgccat tggttttgta gtagcattcg gctttcctga atcgccaaat
     4201 gtatatcttc taagtccaat tccttaattt tgcctttaat cggggcagtt tcattataca
     4261 gttgcttaat cagcttcaca ctattttgaa ccaaggtagc agaatagtga ttgtcatctt
     4321 ccgattgaat cgtaaagttg aagcctgttc gagcaataat gagattaaaa cttttttcaa
     4381 ttaaggctaa atgctcatca aatgcaccac aaagcgattg cagacgagca ttatcttgcg
     4441 gttctaagct aaaaataatt tcgttcaaaa ttctaccttc tgttaaagct gaccaaagct
     4501 ttcaggaata ttagcggata atttttgcca aatttcacca ctagattggc gatttttagc
     4561 catacaagcg gctgcttttt cactatcttt tgcaagacaa gtacataata atgaacggta
     4621 aaagcttaac gttaattgac gattattttc atcagcaaag aaaatttttg cgacttgatg
     4681 atacattgat ttaaagctat ttaggatcaa cgcatacaca ggcttattgg ctaaaaaagt
     4741 aaattgtctg aataacttat aatcaaattc agcataagca gctgctgtat tttctaattc
     4801 atctagtcca tcaaagagtt tagcactttc ttcaggagca aggtaaatcg cttctggaat
     4861 ataagcctcc gccatacgag tacgtaatga caccacattg gcaatcacca ctggaagata
     4921 gcttttatct agcttaataa tagtgccaat aatattaggc cccgaagttt cccaaatatc
     4981 attcactctt gttggcttgc cgtgctgaat acttaaccaa ccttctcgcg ctagacgttg
     5041 tagtacttca cgtaaagttg ttcttgttac cccaatgcgc tctgctaact ctcgctcggc
     5101 aggaagatca gagccggcag ggaaatgatt attccaaata ctctttacaa tatattcttc
     5161 cgctaacgct gccgggcttt gcgcttttaa aatatcactg tgacccatta atgcccccca
     5221 agcaaaaaat atgcttatct aaaatctaac tattctttat ttctaatcaa ttattgcgac
     5281 taaaaagttc agtaatac
//
LOCUS       DANLVT010000140         5246 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.140, whole genome shotgun sequence.
ACCESSION   DANLVT010000140 DANLVT010000000
VERSION     DANLVT010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5246)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5246)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5246
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.140"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            15..1199
                     /locus_tag="PXC99_002251"
     CDS             15..1199
                     /locus_tag="PXC99_002251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein"
                     /protein_id="HDL5418661.1"
                     /translation="MKQKKLNTTLLFITLSLISACSSLPTSGPSYSEILASNENTAET
                     QLPEVNLIKLDNITVQNLYQEQQSQRFSGFDGSMGVGGYAGTVNVGDILEISIWEAPP
                     AVLFGGTFSAEGQGNGHLTQLPQQMVNKNGTVTVPFIGNIKVAGKTPEVIQNQIVGAL
                     SRKANQPQALVRIANNLSSDVTVIRQGNSIRMPLSANNERILDAVAAVGGTSENIEDV
                     TVRLTRGNKVRSMAFETLIADPSQNITLRSGDVIALMNTPYSFTGLGAVGNNQQMRFS
                     SKGITLAEAIGKMGGLIDERSDPRGVFVFRHIPFTQLDYDNQAQWREKGYAEGMDVPT
                     VYQVNLLKPQSMFLLQRFPIQDKDIVYVSNAPLSEFQKFLRMIFSITTPITGTANTIR
                     AY"
     gene            1271..2374
                     /locus_tag="PXC99_002252"
     CDS             1271..2374
                     /locus_tag="PXC99_002252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDL5418662.1"
                     /translation="MSKKKKHFLANPLLWLTVIIPTACSGIYYSLFASDIYVSESSFV
                     VRSPNNQSSLTGVGALLQNSGFARSQDDTYSVQKYMRSRTALEQLEAEIPVKRFYSEQ
                     GDLLSKFNGLGFNDTQEAFYRYFKERLNIDVDSISGIATLRVRAFNAEEGQKINENLL
                     QQGETLINRLNERARQDTVEFAEERVKEAEKDVNNTALALSQYRTKNKIYDLPAQSSV
                     QLSLISTLKSELIRVETQLAQLKSITPDNPQVAALQMRQKSLKKEIDDQSKQLAGGNT
                     SVATQTAEYQRLVLANELAQQQLAAAMTSLQNTRGEADRQQLYLEVIGRPSKPDWALE
                     PYRIYNIISTFFIGLILFGVLSLLLASIREHKN"
     gene            2374..3171
                     /locus_tag="PXC99_002253"
     CDS             2374..3171
                     /locus_tag="PXC99_002253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_157140410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5418663.1"
                     /translation="MRYGDNTTFKHSCVIQKRVIHALLMRELITRYGRKNIGFLWLFI
                     EPLLLTLVITVAWKYIKADKFSTLNIIAFMITGYPIAMMWRNASNRAQGAISANLSLL
                     YHRNVRVLDTIFTRVLLEVTGASIAQILLMTIFIAIGWIEMPNDIFYMLCAWILMAFF
                     ALGLGLIICTLAHYIEPFGKIWGTFSFFLLPLSGAFFFVHNLPLTAQNIALWFPMIHG
                     TEMFRHGYFGETVITYESISYLIVSDIILLFIGLLCVRSFSKGIEPR"
     gene            3168..3815
                     /locus_tag="PXC99_002254"
     CDS             3168..3815
                     /locus_tag="PXC99_002254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5418664.1"
                     /translation="MISIRNVSKQYRTNNGWKTILKDINFELKKGEKVGILGRNGAGK
                     STLIRLMSGVEPPTTGTIERQMSISWPLAFSGAFQGSLTGMDNLRFVSRIYDADFDYV
                     KSFTEEFSELGEYLYEPVKSYSSGMKARLAFALSLSIEFDCYLIDEVIAVGDARFAAK
                     CKHELFEKRKDRSLILVSHSPASIKEYCDSAMVLEEGIMHTFDSIDNAYNFYNKT"
     gene            complement(3893..4522)
                     /locus_tag="PXC99_002255"
     CDS             complement(3893..4522)
                     /locus_tag="PXC99_002255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance TerB family protein"
                     /protein_id="HDL5418665.1"
                     /translation="MDFSKILSQVLDTAKDAATNGLIKGNSKNDQIAKIGGGAVAIGL
                     ISMLFGRNGGSSLAKLGSLAAIGSLAYQAYQKYQAQNSSVSELSQNNFENVDENVASK
                     VILQAMIAAAASDGAITEEEKAAIVSQVGDEAEVIEWIRQEMDTPATVEEIARQVGND
                     QALATQVYLASRAVCRDLERKEIVFLANLADALGLAEALVEQLEKDAGF"
     gene            complement(4594..5067)
                     /locus_tag="PXC99_002256"
     CDS             complement(4594..5067)
                     /locus_tag="PXC99_002256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family protein"
                     /protein_id="HDL5418666.1"
                     /translation="MLEKITACPCQTGKRYAECCQPFHLKQTFASTAEQLMRSRYSAY
                     TLVNIPYIVETTVPSQQKLLDQTAMKEWAENTKWVGLSVLNHLPSLSRIHSQVEFKAF
                     FDTDEGIQGHHETSLFVQIDERWFFVDPTVPLPHQKQPCVCGSGKKFKHCCGNYL"
BASE COUNT         1675 a          926 c          980 g         1665 t
ORIGIN      
        1 ttataggtac tataatgaaa caaaaaaaat taaatactac attattattt ataacattat
       61 cattaatttc agcctgctct agcctaccaa cgtccggccc aagctatagc gaaatcttag
      121 caagtaatga aaatacagct gaaacgcagt tgcctgaagt caatttaatc aagttagata
      181 acatcaccgt acaaaactta taccaagagc aacaatctca acgtttttca ggatttgatg
      241 gctcaatggg tgtgggtggt tatgctggaa cagttaatgt aggcgatata ttagaaatat
      301 ccatttggga agcgccacct gccgtgctat ttggtggaac atttagtgct gaagggcaag
      361 gtaatgggca tttaacccaa ttacctcagc aaatggtgaa caaaaatgga acggtaactg
      421 tgccttttat cggtaatatt aaagttgctg gaaaaacacc tgaagtaatt cagaatcaaa
      481 ttgtcggagc attgagccgt aaagctaatc aacctcaagc attagttcgt attgcgaata
      541 acttgtcgtc tgatgttacg gttatccgcc aaggaaatag cattcgtatg ccattaagtg
      601 ccaataatga gcgtatttta gatgcagttg cggcagtagg tggtacaagc gaaaatattg
      661 aagatgtaac agttcgttta acacgtggaa ataaagtgcg ttcaatggcg tttgaaacat
      721 taattgctga cccctcacaa aatattacat tacgttcagg tgatgttatt gctttaatga
      781 atactcctta tagctttacc ggattaggag cagtaggtaa taatcaacaa atgcgttttt
      841 caagtaaagg cattaccctt gctgaagcta tcggtaaaat gggaggatta attgatgagc
      901 gttcagaccc tcgtggtgtg ttcgtattcc gccatattcc ttttacacaa ttagattacg
      961 ataaccaagc tcaatggcgt gaaaaaggtt atgcagaggg aatggacgtt ccaactgttt
     1021 atcaggtgaa tttattaaaa ccgcaatcaa tgtttttatt gcagcgtttc cctattcaag
     1081 ataaagatat tgtatatgtg tcgaatgctc cactgtctga atttcaaaaa ttcttgagaa
     1141 tgattttctc cattactaca ccaattacag gtacagctaa tacaattaga gcgtactaat
     1201 tagctcatag ataaaatggt aaaaaatcat taaaaaatga ccgcttgtaa cacttttcgt
     1261 tgaggatttt atgtcaaaga agaaaaaaca ttttttagcc aaccctttgt tgtggctaac
     1321 tgtaattatt ccaactgctt gttctggaat ttattattcc ttatttgcct ctgatattta
     1381 tgtttcagaa tctagctttg tggttcgttc gcccaataat caatcgagct taacaggcgt
     1441 tggtgcttta ttgcaaaact ccggtttcgc ccgttctcaa gatgatacct attcagttca
     1501 gaaatatatg cgttcccgta ccgcattaga acaacttgaa gcagaaattc cggtaaagcg
     1561 tttttatagt gagcaaggtg atttactaag caaatttaac ggtttaggat ttaacgatac
     1621 ccaagaagca ttttatcgtt attttaaaga acgtctgaat attgatgtcg attctatttc
     1681 aggtattgca acgctacgcg ttcgtgcttt taatgcagaa gaaggacaaa aaattaacga
     1741 gaatttatta cagcaagggg aaacattaat taaccgcctt aatgaaagag caagacaaga
     1801 tacggttgag tttgcagaag agcgtgtaaa agaggccgaa aaagacgtca ataatactgc
     1861 gttagcatta agccaatatc gaactaaaaa taaaatttat gatttaccgg cacaatccag
     1921 cgttcagctc tcattaattt ctaccttaaa aagtgaatta attcgggtag aaacacaatt
     1981 agcacaattg aagtcaatta cgccggataa tcctcaggta gccgcattac aaatgcgtca
     2041 aaaaagtttg aaaaaagaaa ttgatgatca gtccaaacaa cttgcaggag gtaatacttc
     2101 tgtagcaacg caaactgctg aatatcaacg tttggttctt gctaacgaat tagctcagca
     2161 acaacttgca gcagcaatga cttcattaca aaatacacga ggtgaagctg atcgccaaca
     2221 actttattta gaggtaattg gtaggccaag caaaccagat tgggcattag aaccctacag
     2281 aatttataat attatatcaa ctttttttat cggcttaatt ctatttggag tattaagttt
     2341 gttactagca agtattagag agcataaaaa ctaatgcgat atggtgataa tacaaccttt
     2401 aaacattcct gtgtgattca aaaacgggtg attcacgccc ttttaatgag ggaattaatt
     2461 actcgttatg ggcgtaaaaa tattggcttc ttatggcttt ttatcgaacc attattgtta
     2521 acgttagtga ttactgttgc ttggaaatat ataaaagcag ataagttttc aactttaaat
     2581 attatcgctt ttatgattac aggctaccct atcgcaatga tgtggagaaa tgcctctaat
     2641 agagctcaag gagcaatatc agcaaactta agtttgcttt accacagaaa tgtgagagtg
     2701 ctagatacga tatttactcg agttttatta gaagttactg gcgcatctat cgcccaaatt
     2761 ctcttaatga ctatatttat cgctattggt tggatagaaa tgcctaacga tattttctat
     2821 atgctctgtg cttggatatt aatggcattt tttgccttag gtttaggttt aattatctgt
     2881 actttagcac attatattga accttttggt aagatttggg gaacattcag cttctttcta
     2941 cttcctcttt ctggtgcatt cttctttgtc cataatttac cgctaactgc tcaaaatatt
     3001 gccttatggt ttccaatgat tcatggtaca gaaatgttta gacatggtta ttttggtgaa
     3061 acggtaatta cctatgagag cattagttat cttatagtaa gtgatattat tcttctattt
     3121 ataggactgc tttgtgtgag aagttttagt aaagggatag aaccaagatg attagtatta
     3181 gaaatgtaag taagcaatat cgaactaata acggttggaa aaccatatta aaagatataa
     3241 attttgagct gaaaaaaggc gaaaaagtgg ggattttagg gcgcaatggt gcaggaaaat
     3301 caaccttaat ccgtttaatg agcggagtag aacctccaac aacaggtacg attgaacgtc
     3361 aaatgtcgat ttcttggcca ctggcattta gtggtgcatt ccagggtagt ttgaccggaa
     3421 tggataatct tcgtttcgtc agccgaattt atgatgctga ttttgactat gtaaaatctt
     3481 tcaccgaaga attttcagaa ctcggtgaat atttatatga accggtaaaa agctattctt
     3541 ctggtatgaa ggcccgttta gcctttgcat tatcgctttc tattgaattt gattgttact
     3601 taattgatga agtgattgca gtaggcgatg ctcgattcgc tgccaaatgt aagcacgagc
     3661 tttttgaaaa acggaaagac cgttcattga ttttagtttc tcatagccca gcctcaatta
     3721 aagaatattg cgattctgca atggttttag aagagggtat catgcatact tttgattcta
     3781 tagataacgc ttataatttc tacaataaaa cataaaagaa caagcggtta tatttcacaa
     3841 gtttttcgca aaaaactctc aaaatataac cgcttgttac taaaactgaa aattagaaac
     3901 ctgcgtcttt ttctaattgt tcaactaatg cctcagctaa acctaaagca tcagctaaat
     3961 tagctaagaa aacgatttct ttgcgttcta aatctctgca tactgcacgg gaagctaagt
     4021 aaacttgtgt agccaatgct tggtcattac ctacttggcg ggcaatctct tcaactgtag
     4081 ccggagtgtc catttcttga cgaatccact caatgacttc agcctcatct ccaacttggg
     4141 aaacaatagc tgctttttcc tcttcagtaa tagcaccatc tgaagcagca gcggcaatca
     4201 ttgcttgtaa aatcacttta cttgccacat tttcatctac attttcaaaa ttattttggc
     4261 taagttctga aaccgatgaa ttttgcgctt gatacttttg gtatgcttga taagcaaggc
     4321 taccgatagc ggctaaagag cctaattttg ctaaacttga accgccatta cgcccaaata
     4381 acattgaaat taaaccaata gcgacagcgc cgccaccaat tttagcgatt tgatcgtttt
     4441 tagaattacc tttaattaat ccgtttgtag cggcatcttt tgctgtatct aatacttgac
     4501 ttaaaatctt actgaaatcc atttttgttc ctcttggtaa gtaaatgaaa tttactcatt
     4561 agtccttaga ttcaaacaag agttcaattc aaattaaaga taatttccac aacagtgctt
     4621 aaacttcttt ccggagccac atacacaagg ttgtttttga tgaggcaaag gtacggtagg
     4681 atccacaaaa aaccatcgct catcaatttg aacaaaaaga gaggtttcgt ggtgtccctg
     4741 tatcccctca tctgtatcaa aaaaggcttt aaattcaacc tgactatgta ttctcgaaag
     4801 agaaggtaag tgatttagca cggataatcc tacccatttt gtattttcag cccactcttt
     4861 cattgcagtc tgatcaagta atttctgctg acttggcact gtcgtttcca caatataggg
     4921 aatattaacc aaagtataag cactgtaacg ggagcgcatt aattgctctg ccgttgatgc
     4981 aaatgtctgt tttaaatgga aaggttggca acattcagcg tagcgtttgc ctgtttggca
     5041 aggacaagcg gtgatttttt ctaacatttt tacatttccg cataaaaata aagatgtgaa
     5101 aagtttacgc tataaataaa gaaaaataaa ttttataaaa aagcgtgaca taccccttgt
     5161 ggataactta tgcaaaaatc gtgaattttt tgggtattca ttgctttaaa aagcctttat
     5221 tctatagatt gtggataact taagat
//
LOCUS       DANLVT010000141         5123 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.141, whole genome shotgun sequence.
ACCESSION   DANLVT010000141 DANLVT010000000
VERSION     DANLVT010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5123)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5123)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5123
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.141"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            146..2782
                     /locus_tag="PXC99_002257"
     CDS             146..2782
                     /locus_tag="PXC99_002257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HDL5418667.1"
                     /translation="MDEGFMVKHPRHSSHLHPLIHQLTTPEGEVRIYDASYPQFEVNP
                     VEKEDGIDLIPSLETHGAGVAGIIAAQADKTLGDGYSGGIAKGAELYVATKSYKRTLE
                     KVIQDAKKELENAKDEEDEKTPSLDQMAKNDLLASKEKEMAIERAEWASGLNKLLDNN
                     VFAINNSWNPFSISDDINVVDKFYQSIKQNKHNPLLQAIMRAKNSNTLLVFAAGNESK
                     KQPGVMALLPRYFPELEKNLISAVAVDKEQKIASYSNHCGASKNWCVAAPGDLHVLIG
                     VADEHKKPQYGLTKEQGTSFSAPAITASLAVLKERFDYLTATQIRDTLLTTATDLGEK
                     GVDNVYGWGLINLKKAVNGPTQFLNDETITVTRDDHWSNPLASQFKITKKGDKSLHLD
                     GENHLDTVAVEEGRLALNGKTKVKTISNHANLAVNGTEVEQNYSSSGQSQLEVLGKSG
                     LIANAQANIHLAGSLKIDDKLTEKTEAGDVSATVVQLKDKATYQGGFTQLVENENLAK
                     RGLIQDLYFKESEIIAKVNKPLTDEKADTNGQAGLALLNALRTTPIAYRRSWYNGWLQ
                     SALEQRKLDNLHYAVSNNIYADSLELLRSQNAKGLTQAQQHLFTAYHTPLQTTVWAEH
                     LNQKQSASSKHTDVKHHQSQLGVNHKLADKTVLSATLSQQKNRLEKPFAQATLKQTAL
                     NIGLRYHLDNAWFSEATLQFARQKYQQSRRFASHQLGTAETRGSTLGGEMRIGYQFMP
                     NQWIIEPSLGVQWIQTKMNGLNESGELATQTAAMRYRDVNIVPSVKLQRTFQLEQGSI
                     SPYIGLNYLHRLNGKITKITSNIAGKTLHSEATTKRNRQLNGEVGVKLHYKNWFTAMN
                     LDYSRVKSANLFGWKVNVGFSF"
     gene            complement(2923..3360)
                     /locus_tag="PXC99_002258"
     CDS             complement(2923..3360)
                     /locus_tag="PXC99_002258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HDL5418668.1"
                     /translation="MDWFFNWIGWSILGFVLLALELVLPGVFIMWWGFASLILAFIVA
                     LFTLGQALQIALFAIIATIFSLIWWKYQHGKDKKEDQSSSLNSREHAMLGAQGFVVEI
                     LPNGIARGKFGDTTWRVIGNNLQVADKIEVQKVEGITLFVRKQ"
     gene            complement(3396..4316)
                     /locus_tag="PXC99_002259"
     CDS             complement(3396..4316)
                     /locus_tag="PXC99_002259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH/Band 7/PHB domain protein"
                     /protein_id="HDL5418669.1"
                     /translation="MNFDLPIVSIAFVVLVLVALSSTIKIVPQGYHWTVERFGRYTKT
                     LSPGLNIVVPFIDRIGRKMNMMEQVLDIPSQEVISRDNASVAIDAVCFVQTVDARRAA
                     YEVNHLEQAIVNLTMTNMRTVLGSMDLDDMLSQRDLINGRLLSIVDEATNIWGVKVTR
                     IEIRDVRPPKELVAAMNAQMKAERNKRADILEAEGIRQAEILRAEGEKQSRILKAEGE
                     RQEAFLQAEARERAAEAEAKATQMVSEAIAKGDTTAINYFIAQKYTEALKEIGSSDNS
                     KVVLMPLEAGNLIGSVAGIAEILKSNKTSS"
     gene            complement(4332..5021)
                     /gene="ung"
                     /locus_tag="PXC99_002260"
     CDS             complement(4332..5021)
                     /gene="ung"
                     /locus_tag="PXC99_002260"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HDL5418670.1"
                     /translation="MKTWTEALGEEKQKAYFQQILQYVHNERLAGKVIYPPQNEVFSA
                     FALTEFSDVKVVILGQDPYHGPNQAHGLAFSVKPPVAPPPSLVNMYKELSEDIEGFQI
                     PPHGYLIDWAKQGVFMLNTSLTVEQGRAGSHSQIGWEIFTDKVIAQLNQHRDNLVFLL
                     WGSHAQRKGQFIDRNRHCVLASPHPSPLSAYRGFFGCKHFSKANNYLISQGISPINWQ
                     LSVDVSYSSTH"
BASE COUNT         1703 a         1039 c          946 g         1435 t
ORIGIN      
        1 taacaaaaca cttattgcaa ttagcatttc tagtttttta tctattgcat acgctacaga
       61 atcaatagag aatccacaac ctatcattca attatctgag agcctcagct caaaatatag
      121 tggcaagggt gttaaactag gcgtaatgga tgagggcttc atggttaaac accctcgcca
      181 tagttcacat cttcatcctc ttattcatca attaacaaca cccgaaggcg aagtaagaat
      241 ctacgatgca agttaccctc aattcgaggt aaaccccgta gaaaaagaag atggaattga
      301 tcttattcct tctcttgaaa cacacggtgc aggtgtagct ggtattattg ccgctcaagc
      361 agataaaact cttggtgatg gctatagtgg tggtattgca aagggagctg agctttatgt
      421 tgcaacgaag tcatataaac gaactttaga aaaagttatt caagatgcta agaaagaatt
      481 agaaaatgca aaagacgaag aggatgaaaa aacgccaagt ctggatcaaa tggcaaagaa
      541 tgacttatta gcaagcaaag aaaaagaaat ggcaattgaa cgtgctgaat gggcatccgg
      601 gctgaataaa ttactagata ataatgtttt tgcaatcaat aatagttgga atcctttttc
      661 tattagcgat gacatcaatg ttgtagataa attttatcaa tctatcaagc aaaataagca
      721 caatccgcta cttcaagcta ttatgagagc caaaaatagc aacaccttat tagtctttgc
      781 tgctggtaat gagagcaaga aacagccagg cgtaatggct cttctaccac gttactttcc
      841 cgagcttgag aaaaatttaa tttctgccgt tgcggtagat aaagaacaaa aaattgcttc
      901 atactctaac cactgcggag caagtaaaaa ctggtgtgta gcagcaccgg gcgatttaca
      961 tgttttaatt ggcgttgctg atgaacataa aaaaccacaa tatggcttaa caaaagagca
     1021 aggtacgtca ttttcagcac ctgctataac tgcttcatta gcagtattaa aagaacgctt
     1081 tgattatctg actgcgactc aaattcgcga tactttattg actaccgcca ctgatttagg
     1141 tgaaaaaggg gtcgataatg tttatggctg gggtctcatt aacctgaaaa aagctgttaa
     1201 tggcccaact caattcctaa atgatgaaac gattaccgta actcgtgatg accattggtc
     1261 gaatccactc gccagccaat ttaaaattac aaaaaaaggg gacaaatcac tgcatttaga
     1321 cggcgaaaat catttagata cggtagcagt tgaagaaggt agattggcct taaacggtaa
     1381 aactaaggtg aaaacaatca gtaaccatgc aaatttagct gtcaatggaa ccgaagttga
     1441 gcaaaattat tcttcgtctg gacaaagcca attagaagtg ttgggcaaat ctgggctaat
     1501 tgccaatgct caagccaata tacatttagc cggctcgtta aaaattgatg ataaattaac
     1561 agaaaaaacc gaagcaggtg atgtttcagc gaccgtagta cagttgaaag ataaagcaac
     1621 ttatcaaggc ggatttacac aattagtcga aaacgagaat ttagccaaac gagggttaat
     1681 ccaagatctc tatttcaaag agagcgaaat tatcgcaaaa gtgaataagc cactaactga
     1741 tgagaaagcc gatacaaacg ggcaagccgg tttagcatta ttaaatgcgt taagaactac
     1801 acctattgcc tatcgccgta gttggtataa cggttggctg caatctgcac tcgaacaacg
     1861 taaattagat aatctgcact atgctgtatc taacaatatt tatgcagata gccttgaatt
     1921 gctacgtagc caaaatgcca aaggcttaac ccaagcacag caacatttgt ttacggcata
     1981 ccatacacca ctgcaaacga ctgtttgggc tgaacatttg aatcaaaaac aatcagcctc
     2041 atcgaagcat accgatgtta aacaccacca atcacaattg ggagtaaacc acaaactggc
     2101 agataaaacg gtacttagtg caacactttc acagcaaaaa aaccgcttag aaaaaccatt
     2161 tgcacaagct accttaaaac aaacagcatt aaatattggc ttacgttatc atttagataa
     2221 cgcttggttt agtgaagcta cattgcaatt tgctcgccag aaatatcaac aaagccgtcg
     2281 atttgctagc catcaactag gtactgcaga aaccagaggt tcaacgctcg gtggtgaaat
     2341 gcggatcggt tatcaattta tgccaaacca atggataatt gaaccaagcc ttggcgtaca
     2401 atggattcaa accaaaatga atggtttaaa tgaaagtggc gaacttgcga ctcaaacggc
     2461 tgcaatgcgt tatcgtgatg tgaatattgt tccaagcgtg aaattacagc gaactttcca
     2521 acttgagcaa ggctctattt ccccttatat cgggctaaat tacttgcata gattaaatgg
     2581 aaaaataacc aaaattacca gtaacattgc aggaaaaaca ctgcatagtg aagcaacgac
     2641 gaaacgtaat cgccaattaa acggcgaagt cggggtgaaa ctgcattata aaaattggtt
     2701 tactgcgatg aatttagatt acagtcgagt gaaatctgca aacctatttg gttggaaagt
     2761 aaatgttggc tttagtttct aacttattat ggtgggacac aagcggttaa tttagggtga
     2821 aaatttgcaa atttcactct attttcaacc gcttgagaga aaaaaccttg aacaactgtt
     2881 caaggttttt gtttagtgtt ctatgactaa ataagaaaaa acttattgct tacggacaaa
     2941 taaggtaatt ccctccactt tctggacttc aatcttatct gctacttgta aattattacc
     3001 tataacacgc caagtcgtat caccaaattt tcctcgagcg atgccattag gtaagatttc
     3061 aaccacaaag ccttgagctc ctagcatagc atgctctcga gagttaaggg aactgctctg
     3121 atcctctttc ttgtcttttc catgctgata tttccaccaa ataagactaa aaatagtcgc
     3181 aattatcgca aataacgcaa tttgtaacgc ttgccctaat gtaaaaagtg caacgatgaa
     3241 agcaagaata agcgaggcaa atccccacca cataataaag acacccggta atactaattc
     3301 taatgcaagt agtacaaagc ctaatatgct ccagccaatc caattaaaaa accagtccat
     3361 actccctcca tatactcaat taatccggtt ttaggctatg agcttgtttt attgcttttt
     3421 aaaatttcag caataccagc aacagaacca atcaaatttc cagcttctaa cggcataagt
     3481 acaactttac tgttatctga agaacctatt tctttcaaag cttcggtgta tttttgtgca
     3541 ataaaatagt taatcgctgt agtatcgcct ttagcaattg cttcagaaac catttgagtg
     3601 gctttagctt ccgcttctgc ggctcgttca cgagcttctg cctgtaagaa tgcttcttgt
     3661 ctttcacctt ctgcttttaa aatacgagat tgtttttccc cttcagcccg cagaatttca
     3721 gcttgtcgaa tcccttctgc ttcaagaata tcagcacgtt tattacgctc agctttcatt
     3781 tgagcgttca ttgccgcaac cagctctttc ggtggacgaa catcccgaat ctcaatacgg
     3841 gtgactttta ctccccaaat attagtcgcc tcatcgacaa tggaaagtaa tctaccgtta
     3901 attaaatcac gctgagagag catatcatct agatccatag agccgagcac ggtacgcata
     3961 tttgtcatgg ttaaattaac aattgcttgc tctaaatgat tcacttcata ggcagctcgg
     4021 cgagcatcaa ctgtttgaac aaaacataca gcatcaatcg caacacttgc attatcacgt
     4081 gaaataacct cttgcgatgg aatatctaaa acttgctcca tcatattcat ttttcgccca
     4141 atacgatcaa taaaaggtac gacaatgttc aaccccgggc ttagcgtttt agtataacga
     4201 ccaaaacgtt ctactgtcca atgatagccc tgtggcacaa ttttaatagt cgaacttaat
     4261 gcaactaaaa caagcacaac aaatgcaata ctaacaatcg gtaaatcaaa attcatcgtt
     4321 tgctccttaa actaatgtgt tgaagaataa ctaacgtcta ctgataattg ccaattaatt
     4381 ggggatattc cttgagaaat caagtagtta ttggctttag aaaaatgttt acaaccaaaa
     4441 aatccacgat atgcggaaag tggtgatggg tgcggagaag ctaacacaca atggcgatta
     4501 cgatcgataa attgcccctt tctctgagcg tggcttcccc aaagtagaaa gactaaatta
     4561 tcacggtgtt gatttaattg tgcgatcact ttatcggtaa aaatttccca accaatttgt
     4621 gaatgcgaac cggctctacc ttgctcaacc gttaagctgg tgtttaacat aaatacccct
     4681 tgttttgccc agtcaattaa atagccatgc ggtggaattt gaaatccttc aatatcttca
     4741 gataattctt tatacatatt gaccagagaa ggtggcgggg caaccggcgg tttaactgaa
     4801 aaggctaatc cgtgggcttg atttgggccg tgataaggat cttgccctaa aattactact
     4861 ttcacgtcac taaattcggt taaggcaaaa gcactaaaca cctcgttttg cggaggatag
     4921 atgactttgc cggctaatcg ttcgttatgt acatattgta aaatttgttg aaaatacgct
     4981 ttttgttttt cttcgcctaa agcttctgtc caagttttca taaaaccacc aagtgtatat
     5041 tttttaccca accaactcaa tcatgtctaa aaatggttaa atttttatcg ctttttatct
     5101 aaaaaggggt acaataactt caa
//
LOCUS       DANLVT010000142         5046 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.142, whole genome shotgun sequence.
ACCESSION   DANLVT010000142 DANLVT010000000
VERSION     DANLVT010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5046)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5046)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5046
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.142"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..584
                     /locus_tag="PXC99_002261"
     CDS             <1..584
                     /locus_tag="PXC99_002261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HDL5418671.1"
                     /translation="YTTIMQRISGAKQIDSLTVKIKDDIESQTAEKSIAELLVAKHGK
                     KDFFIMNSDTIKQTITSTTNTMTLLISSIALISLIVGGIGVMNIMLVSVTERTREIGV
                     RMAIGAKQRNILQQFLIEAVVICLIGGVIGILLASAIIWAFNTLGTNFKMMLSPESVI
                     IAVLCSTLIGVVFGYIPARNAAQLNPITALAQE"
     gene            668..1438
                     /locus_tag="PXC99_002262"
     CDS             668..1438
                     /locus_tag="PXC99_002262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HDL5418672.1"
                     /translation="MTITNTELEQILNTKLNSSAINDYAPNGLQVEGKREIKKIITGV
                     TATLPLIEKAIEKNADAILVHHGYFWKSENPCIRGMKGKRIKQLLVNDINLFGYHLPL
                     DIHSELGNNAQLAKHLGVKNLQGLEDRPNSIPMYGELENPISANELKQKLEKTLQRTV
                     ILCDEFVHSPQKMIKTIGICSGGGQGYIDLAFEKGCDAFISGEISEQTTHSAREQGIY
                     YFACGHHATERDGVKALGEWLAVEYGLDVEFIDIDNPA"
     gene            complement(1519..2649)
                     /gene="nrdB"
                     /locus_tag="PXC99_002263"
     CDS             complement(1519..2649)
                     /gene="nrdB"
                     /locus_tag="PXC99_002263"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HDL5418673.1"
                     /translation="MAYTTFSQHKNDQLKEPMFFGQNVNVARYDQQKYEIFEKLIEKQ
                     LSFFWRPEEVDVSQDRIDYAQLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSI
                     PELETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDD
                     LIRDSQLYSLYGEGSYQVDGKTCEVSLRSLKRQLYLCMMSVNALEAIRFYVSFACSFA
                     FAERQLMEGNAKIIKFIARDEALHLTGTQHILNIMAYGNDDPEMAEIARECRQEAYEL
                     FLSAAEQEKAWAEYLFKDGSMIGLNRDILVQYIEYITNIRMQAVGLPLPFKARSNPIP
                     WINAWLVSDNVQVAPQEVEVSSYLVGQIDAKVDSRDFGDFEL"
     gene            complement(2676..4946)
                     /gene="nrdA"
                     /locus_tag="PXC99_002264"
     CDS             complement(2676..4946)
                     /gene="nrdA"
                     /locus_tag="PXC99_002264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018356743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HDL5418674.1"
                     /translation="MNKSLMVTKRNGTREQLNLDKIHRVITWAAEGLENVSVSQVELR
                     SHIQFYEGIRTSDIHETIIKAAADLITKDTPDYQYLAARLAIFHLRKKAYGQFEPPHL
                     YEHVKKLVALGKYDADLLSDYTPEEWETMNGFIDHWRDMTFSYAAVKQLEGKYLVQNR
                     VSGEIYESAQFLYLLVAACLFSKYPTASRLDYIRRFYDATSTFKISLPTPIMAGVRTP
                     TRQFSSCVLIECDDSLDSINATSAAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHT
                     GCIPFYKHFQTAVKSCSQGGVRGGAATVYFPIWHLEAESLMVLKNNRGVEENRARHMD
                     YGVQINKMMYQRLIKGGEISLFSPSDVPGLYEAFFADQAKFEQLYLQYEQDPSIRQRK
                     VKAVELFSLLMQERASTGRIYIQNVDHCNTHSPFNPRVAPIRQSNLCLEIALPTKPLA
                     HFYDEQGEIALCTLSAFNLGTLSNLDELEELADLVVRALDALLDYQDYPVLAARNSSL
                     NRRALGVGVINYAYYLAKNQVRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACA
                     YFDQTTYAKGLLPIDTYKKEIDELTQEPLHYDWEQLRQDILQFGLRNSTLTALMPSET
                     SSQISNATNGIEPPRGYISVKASKDGILKQVVPEYERLKAYYELLWDIPNMDGYLHLV
                     GIMQKFVDQAISANTNYDPNRFAEAKVPMKVLLKDLLTAYKYGLKTLYYQNTRDGAED
                     VQDDLDEGCAGGACKI"
BASE COUNT         1570 a         1059 c          925 g         1492 t
ORIGIN      
        1 cttataccac tattatgcaa cgcatttcag gtgcaaaaca gatagattca ctcacggtta
       61 aaattaaaga tgatattgaa agccaaactg ccgaaaaaag cattgccgaa ttgttagtag
      121 ctaaacacgg caaaaaagat ttctttatta tgaatagtga tacgatcaaa caaaccatta
      181 ccagtaccac caatacaatg actttgctga tctcctctat cgcccttatt tcgctgattg
      241 tcggtggtat cggggtaatg aatattatgc tcgtttccgt caccgaacgc acccgagaaa
      301 ttggtgtccg aatggcgatt ggcgcaaaac aacgcaatat tttgcaacaa tttttaattg
      361 aggcggtggt tatttgccta ataggtggtg tgattggcat tttactggca agcgctatta
      421 tttgggcatt taatacctta ggtacgaatt ttaaaatgat gctttcaccg gaatcggtga
      481 ttattgccgt gctctgctct acacttatcg gtgtggtatt tggctacatt ccggcaagaa
      541 acgccgccca attaaaccca attactgctc tggcacaaga gtaaatgcga taactatctg
      601 ctacactgta ggggcaaaaa attttttgcc cctacatcca ttattatgcc aagtttaagg
      661 agataaaatg acaataacca atactgaact agaacaaatt ctgaacacca aactcaacag
      721 ctccgccatt aacgactatg ccccaaatgg cttgcaagtt gaagggaaaa gagagatcaa
      781 aaaaattatt accggtgtga cagctacact tcccctgatt gaaaaagcga ttgagaaaaa
      841 cgccgatgca attttagtcc accacggtta tttttggaaa agtgaaaacc cgtgcattcg
      901 aggaatgaaa ggtaaacgca ttaaacagct tttagtgaat gacatcaatc tctttggtta
      961 tcacctacca ctggatattc actccgaact aggtaacaac gcccagcttg ctaagcattt
     1021 aggagtaaaa aatctacaag gtttagaaga cagacctaat tcaattccaa tgtacggtga
     1081 attagaaaat ccgatttccg ccaatgaact gaaacaaaaa cttgaaaaaa cgttacaacg
     1141 caccgttatt ttatgtgatg aatttgttca tagcccacaa aaaatgatta aaacaatagg
     1201 gatttgctcc ggcggaggac aaggctatat tgatttagcc tttgaaaaag gctgtgatgc
     1261 ctttattagt ggcgaaattt ccgaacagac cactcactct gcccgtgaac aaggaatcta
     1321 ttattttgct tgcggtcatc acgccacgga acgagatggc gtaaaagcct taggtgaatg
     1381 gttagccgtt gaatatggtt tagatgttga atttattgat attgataacc ctgcataaaa
     1441 aatacaagcg gttgaatttc ctgaaaattt tgcaatttgc aaaaaatcac taaaaatcaa
     1501 ccgcttgtat atcatagtct aaagttcaaa atcgccaaaa tcacggctat ctactttagc
     1561 atcaatctgg ccaaccaaat aagaactgac ttccacttct tgtggtgcta cctgtacatt
     1621 atcggaaacc aaccacgcat tgatccacgg aatggggttg gaacgtgcct taaatggtaa
     1681 tggtagtcca acagcctgca tccgaatatt agtgatatat tcaatatatt gcaccaaaat
     1741 atcccgattt agccctatca tcgaaccgtc tttaaacagg tattccgccc acgctttttc
     1801 ttgttcagct gcacttaaaa aaagctcgta ggcctcttgg cgacattcac gtgcaatttc
     1861 tgccatttca ggatcatcat tgccataggc cataatattc aatatatgct gagtgccggt
     1921 aagatgtaat gcttcatcac gtgcaataaa tttgatgatt ttggcatttc cttccataag
     1981 ctgccgttcc gcaaaggcaa atgagcaagc aaaagagaca taaaaacgaa ttgcttcaag
     2041 cgcattcaca ctcatcatac agagataaag ttgtcttttt agactacgca aactgacctc
     2101 acaggttttt ccatcaacct gataactgcc ttcaccatac aaactataga gttggctgtc
     2161 acgaatcaaa tcatcataat aggcggaaat atctttggca cgcttaataa tttcttcgtt
     2221 tgtgacaata tcatcaaata ctattgatgg atcattgaca atattacgga tgatatgtgt
     2281 gtaagaacga ctgtgaattg tttcgctaaa tgtccaagtt tcaatccagg tttcaagctc
     2341 ggggatagac actaatggca aaagcgccac attcgggcta cgcccttgaa tggaatccaa
     2401 caaggtttgg tattttaaat tgctgataaa aatgtgcttt tcatgttcag gcagttgggc
     2461 atagtcaatg cggtcttgtg acacatccac ttcttccggt cgccagaaaa atgagagttg
     2521 tttttcaatc agtttttcaa aaatttcgta tttttgttga tcataacgcg ccacattcac
     2581 attttgtcca aaaaacatgg gttcttttag ttgatcattt ttatgttgtg aaaacgtagt
     2641 atatgccatg ttattctcct ttatttctgt tcttattaaa ttttacaagc accaccagca
     2701 cagccttcat ctaagtcgtc ttgcacatct tctgctccat cacgggtatt ttgatagtaa
     2761 agggttttta acccgtattt atacgccgtt aatagatctt ttaataatac tttcatcggt
     2821 actttagctt ctgcaaagcg gtttgggtcg taatttgtat tcgccgaaat cgcttggtca
     2881 acaaatttct gcataatccc aaccaaatgc aaatatccgt ccatattagg aatatcccaa
     2941 agcagttcat agtatgcttt taaacgttca tactccggca caacctgctt taaaataccg
     3001 tcttttgatg ctttaacact aatatagcca cgcggaggtt caattccatt ggtggcattc
     3061 gaaatttgcg acgaagtctc cgatggcatt aaggcagtta aagtggaatt gcgcaagcca
     3121 aattgcagaa tatcctgacg tagttgttcc caatcataat gaagcggttc ttgagttaat
     3181 tcatcaattt cttttttata agtatcgata gggagtaacc ctttggcata agtggtttga
     3241 tcaaaataag cacacgcccc ttgttctttg gctaaattca tcgatgcttt taataaataa
     3301 tactgaatcg cttcaaaggt acggtgagtt aaattattag cactgccatc ggaataacgc
     3361 acttggtttt tagctaaata gtaagcatag ttaatcacgc ctacacctaa tgcgcgacga
     3421 tttaatgagc tgttacgtgc agctaatacc ggataatctt gataatctaa tagggcatct
     3481 agcgcacgaa ccactaaatc agccaattct tctaactcat ctaaattgct gagtgtgcct
     3541 aaattaaatg ccgataatgt acataatgcg atttcccctt gttcatcata aaaatgtgcc
     3601 agtggcttag ttggcaaagc aatttctaag cagaggttcg attggcgtat cggtgcgaca
     3661 cgaggattaa atgggctatg agtattacaa tgatcgacat tctgaatata aattcgccct
     3721 gttgaagccc gctcttgcat cagtaatgaa aacaattcta cagctttaac tttacgttgc
     3781 cgaatgctcg gatcttgctc atattgcaaa taaagttgct caaatttagc ttgatcagca
     3841 aaaaacgctt catataaccc cggcacatct gatggactaa ataaactaat ctcaccgcct
     3901 ttaattaaac gttgatacat cattttatta atctgtaccc cgtaatccat atggcgagca
     3961 cggttttctt ccacaccacg gttatttttt aataccatta agctttctgc ttccaaatgc
     4021 caaatcggaa aatacacggt agccgctcca ccgcgaacac caccttgaga gcaagacttt
     4081 actgcagttt gaaaatgttt ataaaaggga atacagccgg tatgaaatgc ttctccacca
     4141 cgaatggggc tacctaatgc ccgaattgcg ccggcattaa taccgatccc agcacgctgt
     4201 gaaacatatt taacgattgc agccgaggtt gcattgatgg aatctaagct atcatcacac
     4261 tcaattaaca cacaggaact aaattgacga gtaggtgtac gcactcctgc cataatcggt
     4321 gttggcaaag aaattttgaa agtggaagtc gcatcataaa aacggcgaat ataatctaag
     4381 cggcttgctg ttggatactt agaaaataaa caggcagcta cgagtaaata caaaaattga
     4441 gccgattcat aaatctctcc gctaacacga ttctgcacta aatattttcc ttccaactgc
     4501 tttactgctg cataggaaaa cgtcatatcc cgccagtgat caataaatcc attcattgtc
     4561 tcccattctt cgggcgtata gtcgctcagc aagtctgcat catatttacc tagcgcaact
     4621 aattttttaa cgtgctcata taaatgcggt ggctcaaatt gtccataagc ttttttgcgt
     4681 aagtggaaaa tcgccaagcg tgcggctaaa tattgataat ctggcgtatc cttagtgatt
     4741 agatcagctg cagccttgat aatagtttca tgaatatctg aagtgcgaat accttcataa
     4801 aattgaatgt gagaacggag ttctacttgt gaaacagaaa cattctctaa cccttctgcc
     4861 gcccaagtaa tcacacgatg aattttatct agattgagtt gctcgcgcgt gccattacgc
     4921 tttgttacca ttaaactttt attcataatt attaaccctt tataaaatac cttagtaaaa
     4981 cactacatct tgtgtttttc attaaagtaa acacaagata gtgtgcttaa agcaaaacat
     5041 caacca
//
LOCUS       DANLVT010000143         5044 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.143, whole genome shotgun sequence.
ACCESSION   DANLVT010000143 DANLVT010000000
VERSION     DANLVT010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5044)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5044)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5044
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.143"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..170
                     /locus_tag="PXC99_002265"
     CDS             <1..170
                     /locus_tag="PXC99_002265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5418675.1"
                     /translation="IENFWSQAKRHLRKFNGIPKAHFELYLKECEWRFNHSDLKSQIF
                     LLKQLVKGGLG"
     gene            complement(171..1058)
                     /locus_tag="PXC99_002266"
     CDS             complement(171..1058)
                     /locus_tag="PXC99_002266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide transport protein"
                     /protein_id="HDL5418676.1"
                     /translation="MNKLTQLALISLAFTGSAFAAPKSFTYCLESSPAALNPQIATDG
                     ATLDVGQAIYNRLIDFEKGTTNLTPSLAERWEISEGGKIYTFFLRQNVQFQSNKSFTP
                     SRYFNADDVIFSINRQFDKTNPYHKLSGGNYEFFYGMNMQNIIKNVTKVDDYTVKIEL
                     SEPNAPFLANLAMDFMAIFSAEYANKMQIAGTPEKLDLEPIGTGAFQFYGYQKDAAVR
                     FTAFEHYWEGKAKIDRLVFSITPDASVRLAKLEKNECQAMPYPNPSDLSALKANKDIQ
                     LFEKSGLNIGYITFRGCPR"
     misc_feature    complement(1084..1229)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            complement(1406..2416)
                     /gene="mglC"
                     /locus_tag="PXC99_002267"
     CDS             complement(1406..2416)
                     /gene="mglC"
                     /locus_tag="PXC99_002267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018355241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     permease MglC"
                     /protein_id="HDL5418677.1"
                     /translation="MSALQQNRTLDFFKQNAIYFVLLILLIVIIVQDPSFLSLRNFSN
                     ILSQSSVRLIIALGVAGLIVTQGTDLSAGRQVGLAAVISATLLQSMENMNKVFPNLSE
                     IPIPVVVLTVCAIGAVIGLFNGFVVAYLNVTPFIATMGTMIIVYGINSLYYDAVGSSP
                     IAGFSDDFSTFAQGFFRFGDFRLSYITIYAVIATIIMWTLWNKTRFGKNVFAIGGNPE
                     AARVSGVNVPLNLMGIYMLSGIFYAFGGMLEAGRIGSATNNLGFMYEMDAIAACVVGG
                     VSFAGGVGTIIGVVTGVLIFTVINYGLTYIGVNPYWQYIIKGGIIILAVAIDSLKYAK
                     KK"
     gene            complement(2430..3929)
                     /gene="mglA"
                     /locus_tag="PXC99_002268"
     CDS             complement(2430..3929)
                     /gene="mglA"
                     /locus_tag="PXC99_002268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005709009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     ATP-binding protein MglA"
                     /protein_id="HDL5418678.1"
                     /translation="MTGEVLLTMTNVSKSFPGVKALDNANLTVKSHSVHALMGENGAG
                     KSTLLKCLFGIYAKDEGDILFLGKPVNFKTSKEALENGISMVHQELNLVKQVTVMDNL
                     WLGRYPLKGPFVDHDKMYRDTKAIFDELDIDVDPRDKVAKLSVSQMQMIEIAKAFSYN
                     AKIVIMDEPTSSLSEKEVEHLFKIIQKLKDRGCGIIYISHKMDEIFKICDEITILRDG
                     KWVNTVAIKDTSMDQVVSMMVGRELTQRFPEKTNLPKEVILEVEHLTAKNQPSIQDVS
                     FSLRRGEILGIAGLVGAKRTDIVETIFGVREKAGGTIRLNDKEINNRNAFDAINNGFA
                     LVTEERRSTGIYANLSIEFNSLISNMKSYLGKFGLLSNKKMKSDTQWVIDSMNVKTPS
                     HQTHIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDIGAKFEIYQLILELANKDK
                     GIIMISSEMPELLGVTDRILVMSNGKVAGIVETAHTSQEEILQLAAKYL"
     gene            complement(4001..4939)
                     /gene="mglB"
                     /locus_tag="PXC99_002269"
     CDS             complement(4001..4939)
                     /gene="mglB"
                     /locus_tag="PXC99_002269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005648358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
                     /protein_id="HDL5418679.1"
                     /translation="MGASRNPLPLGRGGCQKYDDNFMALMRKEIEKEGKTQKVELLMN
                     DSQNTQSIQNDQVDVLLSKGVKALAINLVDPSAYKTIIQKAKSEDVPVVFFNKDPGAA
                     AIDSYPKAYYVGTEPKESGIIQGELIAKQWKAHPELDLNKDGKIQFALLKGEPGHPDA
                     EARTKYVVESLKAQGIDSEQIFMDAALWDAAQAKDKVDAWLSSGKAKDIEVIISNNDG
                     MALGALEATKAHGRKLPIFGVDALPEALQLIKKGELAGTVLNDGVNQGKAVVQLSANL
                     ADGKDAVAGTQWKLENRVVRIPYVGVDKDNLSEFLK"
BASE COUNT         1456 a         1081 c          925 g         1582 t
ORIGIN      
        1 gaattgagaa tttttggagt caagcaaaac gtcatttacg caagtttaat ggtattccga
       61 aagcccattt tgagctatat ttgaaagaat gcgaatggcg ttttaatcac agtgacttaa
      121 aatctcaaat attcctttta aaacaattgg ttaaaggggg gttaggttag ttatctagga
      181 cagcccctaa aagtaatata accgatattt aggcctgact tttcaaataa ttgaatatct
      241 ttattcgctt ttaaagcaga caaatctgac gggttcggat aaggcatcgc ttggcattcg
      301 ttcttctcca atttagctaa acgtactgag gcatcgggcg taatactaaa tacaaggcga
      361 tctatcttcg cttttccttc ccaatagtgt tcaaatgctg taaatcttac cgctgcgtcc
      421 ttttggtaac catagaactg gaatgcacct gtgcctatag gttctaaatc taatttttcc
      481 ggcgtacccg ctatttgcat tttatttgca tattccgcag aaaagatcgc cataaaatcc
      541 atagctaaat tagcaagaaa gggggcattc ggttcagata attcgatttt taccgtgtaa
      601 tcatctactt ttgttacatt tttgatgatg ttttgcatat tcattccgta gaaaaactca
      661 tagttaccgc cggacaattt gtgatatgga ttcgtcttat caaactgacg gttaatcgaa
      721 aaaataacat catcagcatt aaaataacga ctaggggtaa aacttttatt actctggaac
      781 tgcacattct gacgcaagaa aaaagtataa atttttccgc cttcactgat ttcccatcgc
      841 tctgccagag aaggagtgag gttagtggta cctttttcaa aatcaatcag gcgattatag
      901 attgcttgcc cgacatcaag agtagctcca tctgttgcaa tctgaggatt caatgctgcc
      961 ggagatgatt ccaaacagta agtaaaagat ttaggtgctg cgaaagcaga acctgtaaat
     1021 gctaaagaaa taagtgcaag ttgtgtcagc ttgttcattg tcatatcctt aaatgttaag
     1081 caataaaaaa ccctttcaaa agttgccttc cgaaagggtt agaattgggt ttgcgatttt
     1141 ggattgcgtt tgccatttca ggttttcgga agatatcttc cgaacacgcc aaatgcccga
     1201 aagattaatc ggtcaaatgg tagtgatgat gtttaacgca atagctcata atattctcca
     1261 aaattgaatg tttaggaatt tacgcttttt aaaaatcaat tgcaaacgtt ttctttaaaa
     1321 ttttgtaaaa aattcaacat ttttcaccgc ttgtatcgta cctaggagca aatggcgatt
     1381 tgctcctagg tttccaagca ataggctatt ttttcttcgc atatttaagt gagtcaatcg
     1441 ctaccgccaa gataatgatg ccacctttaa taatatattg ccagtaaggg tttactccaa
     1501 tataggttaa gccgtagttg ataacggtga agattaacac ccctgttact acaccgatga
     1561 tagtacccac accaccggca aaggataccc cacctaccac acaagcggca atggcatcca
     1621 tttcatacat aaagcctaag ttgttggttg cactaccgat acgacctgct tctaacatac
     1681 cgccgaaggc atagaagatg cctgaaagca tataaatacc catcaggtta agcggtacgt
     1741 ttacaccgga aactcgtgct gcttcagggt tgccgccaat agcaaatacg tttttaccga
     1801 agcgggtttt attccataac gtccacataa taatggtagc aatcacggca taaatagtga
     1861 tgtaggatag cctaaagtcg ccaaagcgga agaagccttg tgcaaaggtt gagaaatcat
     1921 cgctaaagcc tgcaattggc gatgagccta ctgcatcgta gtaaagcgag ttgataccat
     1981 acacaataat cattgttccc atcgtggcaa taaacggtgt tacgttgagg taagccacca
     2041 caaagccgtt aaataaacca atgacagcac cgatggcaca cacggttaat acaaccacag
     2101 gaatcgggat ttccgagagg tttgggaata ccttgttcat attttccatt gattggagca
     2161 aggtggcgga aattaccgct gccaagccca cttggcgacc ggcagataag tctgtccctt
     2221 gtgttacaat caagcctgca acccctaatg caataatcaa acgcacagaa gattgcgata
     2281 aaatgttact gaagttacgc aagctcaaga aacttgggtc ttgcacaata atcacaataa
     2341 gtaagattaa taatacgaag taaatcgcat tttgtttaaa aaaatcgagt gttctatttt
     2401 gttgtaaagc agacatactt cactccttgt tataaatatt ttgctgcgag ttgcaagatt
     2461 tcttcttgcg aggtgtgagc ggtttcgaca atacctgcaa ctttcccgtt actcatcact
     2521 aaaattcggt ctgtgacccc aagcaattcc ggcatttccg atgaaatcat aatgatgcct
     2581 ttatctttat tcgccagctc taaaatcaac tggtaaattt caaattttgc cccgatatcg
     2641 ataccacggg tcggctcgtc aagcatcaag atttcaggct gggttaacaa ccaacgcccg
     2701 ataatcactt tttgttggtt accgccggaa agtgagccaa tatgcgtttg atgcgatggg
     2761 gtttttacat tcatcgaatc aattacccat tgggtatcgc ttttcatttt tttattgctc
     2821 agtaagccga acttgcctag ataagacttc atatttgaaa tcagagagtt aaactcaatg
     2881 cttaagttgg cataaatccc tgttgaacgg cgttcttctg taaccaatgc aaagccgtta
     2941 ttaatcgcat caaaagcgtt gcggttattg atttctttat cgtttagtcg gatagtgccg
     3001 cctgctttct cccgtacacc gaaaatggtt tcaacaatat cagtccgttt tgctccaact
     3061 aagccggcga tgcctaaaat ttcccctctg cgtaagctaa agctgacatc ttgaatagag
     3121 ggttgatttt ttgccgttaa atgctcaact tcaagaatca cttctttcgg cagattggtt
     3181 ttttcaggga aacgctgggt cagctcacgc cctaccatca ttgaaaccac ttgatccatt
     3241 gaggtatctt taattgcaac ggtgtttacc catttaccgt cacgcaaaat ggtaatttca
     3301 tcacaaattt taaaaatttc gtccattttg tgtgaaatat agataatgcc acagcctctg
     3361 tctttcagtt tttggataat tttaaataaa tgctcgactt ctttttctga aagtgacgaa
     3421 gttggttcgt ccataatcac aattttggca ttgtaagaga aagcttttgc aatctcgatc
     3481 atctgcattt gtgaaaccga taatttggct actttatcac gtggatcaac atcaatatct
     3541 aattcatcaa aaatcgcctt agtatcacga tacattttat cgtgatctac aaaaggccct
     3601 tttagtgggt aacgacctag ccataagtta tccattaccg tcacttgttt tactaggttc
     3661 aactcttggt gaaccattga gatcccattt tctaacgcct cttttgaggt cttaaaattc
     3721 accggcttgc caagaaagag aatatctccc tcatctttag cataaatccc aaataagcat
     3781 ttcagtaacg ttgatttacc tgctccattc tctcccatta aggcgtgaac actatgggat
     3841 ttcaccgtta agttagcatt atctaaggct tttaccccgg gaaatgactt gctaacattt
     3901 gtcattgtga gtaaaacttc acctgtcata tctcacccct gattacatcg aaaaatcgaa
     3961 aaaaagcacg ggtatccatc acccgtgcta aaagcgtgaa ttattttaaa aattcagata
     4021 agttgtcttt atcgacacca acgtaaggaa tacgcaccac acggttttcc aatttccatt
     4081 gtgtaccagc aactgcatct ttaccgtctg ctaagttagc agaaagctga acaaccgctt
     4141 taccttggtt tacaccatca tttaataccg taccggctaa ttcacctttt ttgattaatt
     4201 gaagtgcttc tggcaatgca tctacaccga agattggtaa ttttctaccg tgagctttgg
     4261 ttgcttctaa tgcacctaac gccataccat cattattaga aataattact tcgatgtctt
     4321 tcgctttacc acttgataac caagcatcca ctttatcttt agcttgggct gcatcccata
     4381 atgctgcgtc cataaagatt tgctcactgt cgataccttg tgcttttaag ctttctacca
     4441 catatttagt acgtgcttcc gcatcagggt gacccggctc accttttaat aaggcaaatt
     4501 ggattttacc gtctttattc aagtctaatt caggatgggc tttccactgt tttgcaatta
     4561 actcaccttg aataatgcct gactctttcg gctcagtacc tacataataa gctttcggat
     4621 agctatcaat cgcagctgca cccgggtctt tattgaagaa caccacaggc acatcttcac
     4681 tttttgcttt ttgaataatt gttttataag ctgatggatc cactaagtta attgctaatg
     4741 ctttaacccc tttagaaagt aatacatcaa cttggtcgtt ttgaatagat tgcgtatttt
     4801 gcgagtcatt cattaataac tcgacttttt gtgttttacc ctctttttcg atttctttac
     4861 gcattaatgc cataaagtta tcgtcatatt tttgacatcc tcccctgcct aaaggcaggg
     4921 gattcctact agctcccaca gcaagctgtg ggctactctc ggtgggtttc tactgctgat
     4981 ctctattgag attcacttca tagacgcttc gggtatgtcc taccctgata tttattatgc
     5041 ttgg
//
LOCUS       DANLVT010000144         4994 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.144, whole genome shotgun sequence.
ACCESSION   DANLVT010000144 DANLVT010000000
VERSION     DANLVT010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4994)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4994)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4994
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.144"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..151
                     /locus_tag="PXC99_002270"
     CDS             <1..151
                     /locus_tag="PXC99_002270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HDL5418680.1"
                     /translation="SVFNELLEEPFLLSEYDAYQFTNEVIKFHSEESLKAWGGCLIWE
                     QNNGS"
     gene            283..981
                     /gene="aphA"
                     /locus_tag="PXC99_002271"
     CDS             283..981
                     /gene="aphA"
                     /locus_tag="PXC99_002271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid phosphatase AphA"
                     /protein_id="HDL5418681.1"
                     /translation="MTAATMFASLIAFSAQAGGPKVAYTQPGIDMRTHEAQQAPIHWV
                     SIEQIKESIKDLPPMAVSFDIDDTVAATSGCFHYGKQKYSPDDFSYLKNQDFWDEINA
                     GCDKYSLPKQVAINLIKMHQERGDQVYLITGRTAGKNEQVTTIMQKYLGIKNMQPVNF
                     MGGKAHSTKYDKTPAIIEHKVQIHYGDSDDDILAAREAGIRGIRILRAANSNYTPFPQ
                     AGGYGEEVVVNSSY"
     gene            1162..1923
                     /gene="udp"
                     /locus_tag="PXC99_002272"
     CDS             1162..1923
                     /gene="udp"
                     /locus_tag="PXC99_002272"
                     /EC_number="2.4.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine phosphorylase"
                     /protein_id="HDL5418682.1"
                     /translation="MSEVFHLGLTKAMLKGAKIAIVPGDPARSERIAKKMDNPEFLAS
                     TREFTSWLGYLDGEPVVVCSTGIGGPSVSICVEELAQLGVRTFLRIGTTGAIQEHINV
                     GDILITTGAVRLDGASQHFAPMEYPAVANFECTNALYAAAVESGVTPYVGITASSDTF
                     YPGQERYDTFTGKIYRHFQGSLKQWQDLNVMNFEMESATLFTMCSALGLRAGMVAGVI
                     VNRTQQEIPNEATIHDTEHKAVSVVVEAARKLIKG"
     gene            1998..2594
                     /locus_tag="PXC99_002273"
     CDS             1998..2594
                     /locus_tag="PXC99_002273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418683.1"
                     /translation="MKKWLMLITLIFGITACFSSLEFDESKQEKINSFLIVGNKLYVV
                     GELHDYEFEHQQVAELNNFLKSLIANKIKSVEANFEVKESKKVEGSYRIILDGKSLTE
                     SERSTVMDTFHFNSAQNPSITYQAEGNLVKLANREELLQKFRFKQALEANVRYYKMKS
                     GLQNTAEGALSIVMLPVAVVAVLPFYMFWVGACATYGC"
     gene            2605..3090
                     /locus_tag="PXC99_002274"
     CDS             2605..3090
                     /locus_tag="PXC99_002274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate lyase"
                     /protein_id="HDL5418684.1"
                     /translation="MYSLYLKILSECDWCCDPKTLSTYQQEWLLHEGSLTQKLYDVAT
                     NFNVEVVQEKWIAKNSEKTTACNEDVWSREVLLKDGEKNWIFAQTLVPRSTIENIAQN
                     VLELGNQPIGLWLFSQNPTRTKLEWTQTENGLFARRGVYEIRGYSLEIRELFLETFPY
                     L"
     gene            complement(3128..3997)
                     /locus_tag="PXC99_002275"
     CDS             complement(3128..3997)
                     /locus_tag="PXC99_002275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HDL5418685.1"
                     /translation="MKNINTQAVGWIGLGQMGEPMAKHLLNSGVNVGVYNRDPAKAEK
                     VVEAGGTLYPSVLELVKAYDVIFLMIADYAAVQQVLSDEVLAELNGKVVVNMSTISPS
                     QNQAVEALLAQHGAEFVEAPVSGSSKVAEAGKLLVLAAGKEETVELLKPLFAAFSTTT
                     FYYGEVGKAGGIKLMINSLLGIFIQAYGEALNFADQYGIPKEKVIEMISGSFMNSPIF
                     QAKVPMYQANEFPPAFMMKHMTKDFNLASEEIAKLGKSYPLIEQATKTYNQANDSGLS
                     EVDMAAIYQFLAK"
     gene            4127..4918
                     /locus_tag="PXC99_002276"
     CDS             4127..4918
                     /locus_tag="PXC99_002276"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HDL5418686.1"
                     /translation="MKPTILLYDSGMGGLTIYDEIRKVLPHAHYLYCFDNAFFPYSEK
                     SEAVLIERAVKIVQKIAEKQPLDMVVVACNTASTVVLPALREHFNFPIVGTVPAIKPA
                     AAISETKVIGLLATKGTVARPYVDELIRKYAQDCTVEKIGTTDLVEIVEEKQRSGKVD
                     MNRLQKVVEAWQGKPELDTVILGCTHFPLVKAELQQLLPDVKYFVDPGVGIAKRVLSL
                     LEERKFQQKADFENQAFCTKQSSAFNIKQDVMQNWGFNNLSVIDI"
BASE COUNT         1547 a          904 c         1046 g         1497 t
ORIGIN      
        1 atcagtattt aatgaattat tagaggagcc atttttatta agcgaatatg atgcctatca
       61 atttacgaat gaggtgatta aatttcattc agaagaaagc cttaaagctt ggggaggttg
      121 cttgatttgg gaacagaaca atggctcata agcgttaagc gtaatcgttt gcttgtgatc
      181 atattcacaa aataaggttt ttgtattagc taagagtgcc taataagatt aaaataggta
      241 tggttaatca tatggaggta ttttataaaa tttacattaa aaatgacggc agcgacaatg
      301 tttgcatctc ttattgcttt ttcagcacaa gcaggcggac caaaagtagc ttatacccag
      361 ccgggaattg atatgcgaac acatgaagca cagcaagcgc caattcattg ggtatctatt
      421 gagcaaatta aagaaagcat caaagattta ccccctatgg cggtaagttt tgatattgat
      481 gatactgttg ctgcaactag cggttgcttc cactacggaa agcaaaaata ttcgccagac
      541 gatttcagct acttaaaaaa tcaagatttt tgggacgaaa ttaatgctgg ctgtgataaa
      601 tattctttgc caaagcaagt tgctattaat ttaataaaaa tgcaccaaga acgtggtgat
      661 caagtttatt taattacggg gcgtaccgca ggtaaaaatg aacaagttac aacgattatg
      721 caaaagtatc ttggtattaa aaatatgcaa ccggtaaatt ttatgggggg gaaagcacat
      781 tcaacaaaat atgataaaac ccctgcgatt attgaacata aggtgcaaat tcactatggt
      841 gacagtgatg atgatatctt agctgcccgt gaagccggta ttcgaggtat tcgtatactt
      901 cgtgcagcaa attctaatta tacgccattc cctcaggccg gaggatatgg tgaagaagtt
      961 gttgtcaatt caagttatta atttcttagt ctgaaatatg gccaccattg cgtggccatc
     1021 attttttatt tatataatga cgaaaccgtt tacctttgat ctagttcaca aaatcaaact
     1081 ttgcttgcaa aaaattgtcg taaattaacc gcttgctaag atagaatggc tcatatccag
     1141 ttagataaaa aggagataaa aatgtctgaa gtatttcatt taggtttaac caaagccatg
     1201 ctcaaaggtg caaaaattgc aatcgttccg ggcgatccgg ctagaagtga acgtattgcc
     1261 aaaaaaatgg acaacccaga gtttttagcc tcaacccgtg aatttacctc ttggttaggt
     1321 tatttagatg gcgaaccggt ggtggtttgt tcaaccggta ttggcggacc gtcggtgtcg
     1381 atttgtgtgg aagagttagc acagttaggt gttcgcacat tcttacgcat tggcacaaca
     1441 ggtgcaattc aagagcatat taatgtaggc gatattttaa ttaccaccgg agcggtgcgt
     1501 ttagatggtg cgagccaaca ttttgcacca atggaatatc ctgcagtagc gaattttgaa
     1561 tgtactaatg ctctttatgc agcagcagtg gaatcaggcg ttacacctta tgtggggatt
     1621 acagcttcat cagacacttt ctacccgggg caagaacgtt acgacacttt caccggcaag
     1681 atctatcgtc atttccaagg ttcattaaaa cagtggcaag atctcaatgt tatgaatttt
     1741 gaaatggaat ccgccactct ctttacgatg tgttcggcat taggcttgcg agcaggtatg
     1801 gttgctggtg taattgtaaa ccgcactcaa caagagattc cgaatgaagc aaccattcac
     1861 gacaccgaac ataaagccgt ttcggtagta gtggaagcgg caagaaaatt aattaaaggc
     1921 taatctttaa atttaaaagc aaaaaaggta aattgtcttt gttacaattt accttttttc
     1981 tttttaggga gctttctatg aaaaaatggt tgatgttaat tacattaatt ttcggcatta
     2041 ccgcttgttt ttccagttta gaatttgatg aaagtaaaca agaaaaaatc aattcattct
     2101 tgattgttgg taataaatta tatgtggtgg gtgaactgca cgattatgaa tttgagcatc
     2161 agcaagttgc ggaactgaat aattttctca aaagcctaat tgctaataaa atcaaatctg
     2221 ttgaggcaaa cttcgaggtt aaggaatcca aaaaagtgga aggtagttat agaattattt
     2281 tagatgggaa atcacttaca gaaagtgaaa gaagtacggt gatggatacc tttcatttta
     2341 attcagctca aaatccatct attacttatc aggcggaagg gaacttggtg aaattagcca
     2401 atagagaaga gcttttgcaa aaattccgat ttaaacaagc gcttgaggcg aatgtgcgtt
     2461 attacaaaat gaaaagtggt cttcaaaata cggctgaagg agcgttaagt attgtaatgt
     2521 tgcctgttgc tgtagtagct gttttaccat tctatatgtt ttgggttggt gcttgtgcca
     2581 cttacggatg ttaaataact ttttatgtat tctctatacc tgaaaatttt atcggaatgc
     2641 gattggtgtt gtgatccaaa aacactttct acctaccagc aagaatggct tctgcacgaa
     2701 gggtcactta cccaaaaatt gtatgatgtc gcaaccaatt tcaacgtgga agtagtacaa
     2761 gaaaagtgga ttgcaaaaaa cagtgaaaaa acgaccgctt gtaatgaaga tgtttggtcg
     2821 cgagaagtgt tactgaaaga tggtgaaaaa aattggattt ttgcccaaac tcttgtgcca
     2881 agatcaacaa tcgaaaatat cgctcaaaac gtgttggaat tgggcaatca gccgattggt
     2941 ttatggctat tttctcaaaa tcctactcgc accaaattag aatggacaca aacagagaac
     3001 ggtttattcg ctcggcgtgg ggtgtatgaa attagagggt attctctgga aattcgagag
     3061 ctttttttag aaacctttcc ttatttataa aaaaatcggt tggtaatgac accaaccgat
     3121 tttcatctta ttttgccaag aactgataaa ttgcagccat atccacttcg ctcaagcctg
     3181 aatcattggc ttgattgtag gttttagtgg cttgctcaat aagcgggtaa gatttgccta
     3241 atttcgcaat ttcttcgctt gccaaattaa aatctttggt catatgtttc atcataaacg
     3301 caggcggaaa ttcattagct tggtacatcg gcacttttgc ttggaagatc gggctgttca
     3361 taaacgagcc tgaaatcatt tcgattactt tctctttcgg aatgccatat tggtcggcga
     3421 agtttaacgc ctcgccatag gcttgaatga agatgcccag tagcgagttg atcatcaatt
     3481 taatcccacc ggctttaccc acttcaccat aatagaaagt ggtggtacta aaggcagcga
     3541 aaagcggttt gagcaactca acggtttctt ctttaccggc agccagtacc aatagtttac
     3601 ctgcttctgc cactttgctt gaaccggaaa ccggagcttc aacaaattct gcaccgtgtt
     3661 gggctagtag agcttctacc gcctggtttt ggcttgggga aatggtgctc atattcacca
     3721 ctactttgcc gtttaattca gccaacactt catcgcttaa cacctgttgc acggcggcat
     3781 agtctgcaat catcaagaaa atcacatcgt aggctttcac caattccaac acagaaggat
     3841 ataatgtgcc gcctgcttca actacctttt ctgcttttgc tgggtcgcgg ttgtaaacgc
     3901 ccacgttcac tccgctattt agcaaatgtt ttgccatcgg ttcgcccatt tgccctaaac
     3961 caatccaacc gactgcttgt gtattaatgt ttttcattat ttttctcctt actgaataaa
     4021 gcaaattgat tattgcgatt ttccctcatc aagtcaaata gagagaactt gaatatagca
     4081 atggaaaaga gtagcatttt agcacttact tttttgaaca ataccaatga aaccaacaat
     4141 tcttttatac gattccggaa tgggcggatt gacgatttac gatgaaatcc gaaaagtgtt
     4201 accgcacgct cactatttat attgctttga taacgctttt ttcccatatt ccgagaagtc
     4261 ggaagcagtt ttaattgagc gagcggtcaa aattgtgcaa aaaattgcag aaaaacaacc
     4321 gcttgatatg gttgttgttg cttgtaatac ggcaagcaca gtggttctgc cggcattgcg
     4381 tgagcatttt aattttccga tagtaggaac tgtaccggca attaaaccgg cagcggcaat
     4441 ttccgaaact aaagtcatcg gcttgctcgc cactaaaggc acggttgctc gcccttatgt
     4501 tgatgaattg ataagaaaat atgctcagga ttgtacggta gaaaaaattg gcacaaccga
     4561 tttggttgaa attgttgaag aaaaacaacg aagcggtaaa gtggatatga accgactaca
     4621 aaaagtggtc gaggcttggc aaggtaagcc ggaattggat acggttatac tcggttgtac
     4681 ccattttccc ttagtcaaag ctgaattaca gcaattattg cccgatgtga aatattttgt
     4741 tgatccgggt gtaggtattg ccaaacgggt gctaagcctt ttggaagaac gcaaatttca
     4801 acaaaaagcc gattttgaaa atcaagcatt ctgcactaaa caaagttctg catttaatat
     4861 caaacaagac gttatgcaga attggggatt taataatctt tcggtgattg atatttaaac
     4921 aaaacaatct gttttgatga aaaaaggttc agttgagcaa aaactttaaa aaagggcttg
     4981 cactcaattt taaa
//
LOCUS       DANLVT010000145         4921 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.145, whole genome shotgun sequence.
ACCESSION   DANLVT010000145 DANLVT010000000
VERSION     DANLVT010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4921)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4921)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4921
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.145"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            123..350
                     /locus_tag="PXC99_002277"
                     /pseudo
     CDS             123..350
                     /locus_tag="PXC99_002277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609911.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
     gene            375..770
                     /locus_tag="PXC99_002278"
     CDS             375..770
                     /locus_tag="PXC99_002278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5418687.1"
                     /translation="MKIHTQIRKEILSLLEAKLTDIEHFYNGQPNFIDIDEQQLAISV
                     YLDEINRQELTLCDEQWTAQLNITIYLKSVDEAEDELDEWAEKIREVVETYSAFEHLE
                     GISLSQYQYEQDQNQRTWHSATLIFDVEY"
     gene            802..1443
                     /locus_tag="PXC99_002279"
     CDS             802..1443
                     /locus_tag="PXC99_002279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418688.1"
                     /translation="MAKTTKVQGTKFRIGIGREAQKAITAITLATATLTIATSGYKKG
                     DAIEITGCGQLDGIYPVLSVTGDQVKLCEEVNWTGKDLPANYTKAKAALVQYSDQFCA
                     VKNIEKSDDTLSTEDVTTVCSEGTETEPGEIEFGSIKLSFFHKPSTEMQTRLRKLFYD
                     KSTFAYKLELPDNHGTTYGEGFIEAGNGFSGEVKGKYEGSVSIKPSKRDYLLV"
     gene            1526..1927
                     /locus_tag="PXC99_002280"
     CDS             1526..1927
                     /locus_tag="PXC99_002280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418689.1"
                     /translation="MTLREKLLANKPKLQSIEINGETYYLREATVGDMNKQIFETRSW
                     LIQQAEQENVELPAEDDETFDEALNRFGEKYRLAQSVAYRLCDENGALLFNPLNIDDL
                     NAIAELDSKVIIDFNQAVSAPKDSASEESSK"
     gene            1972..2202
                     /locus_tag="PXC99_002281"
     CDS             1972..2202
                     /locus_tag="PXC99_002281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4035 domain-containing protein"
                     /protein_id="HDL5418690.1"
                     /translation="MPERHFAEYQLFYQEQPFGLWREDYRAAQLAHLTAMINRDPKGK
                     APELSEFMPFFNRADEVEANEDDGVADYLAKR"
     gene            2270..2536
                     /locus_tag="PXC99_002282"
     CDS             2270..2536
                     /locus_tag="PXC99_002282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="HDL5418691.1"
                     /translation="MATINDAFSFRTNTEIKNTAFDVIKNYGMTPSQVFNMFLTEIAK
                     TKTIPLSLNYQPNLETKLAMQEAKSGKNEVYASLEAFHKAMLAE"
     gene            2540..2809
                     /locus_tag="PXC99_002283"
     CDS             2540..2809
                     /locus_tag="PXC99_002283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin, RelE/StbE family"
                     /protein_id="HDL5418692.1"
                     /translation="MLQISPTNAYKRDFKKIAAELVGSSEYVEVMYCLINQLPLAEKY
                     RDHPLQGEWQGFRDCHIKPDLVLIYAVEDNLLRLVRLGSHAELFG"
     gene            2884..3147
                     /locus_tag="PXC99_002284"
     CDS             2884..3147
                     /locus_tag="PXC99_002284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418693.1"
                     /translation="MKNVLLFIVHFFLIAMLSIIPILIILGAIERDPYYTAWIFLSVF
                     LGIGALLYFATIVSKLINKGKTQTLEEKRYAEYWNNVKVNIPK"
     gene            3207..3917
                     /locus_tag="PXC99_002285"
     CDS             3207..3917
                     /locus_tag="PXC99_002285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tape measure protein"
                     /protein_id="HDL5418694.1"
                     /translation="MSGLGKLTVTLELENAKFQSAMTKSDYEAQKFAKNFIQNMDRAR
                     NHAKEFADRSTQYLKNIEQAAKNLNKNSEFSFLSTIGGHYQSMSSGILSAAKAYTDIQ
                     NKMKLVSGSSAEAAKRLTDVFDIATKTSQSTEAVSGVYQTFAQNAQSLGLAQKDVAEL
                     TKTVSQAVAASGASSSAASNALTQFGQSLLMGKMKAQEFNSLITQTPTIIQAMAKGLG
                     MTMAEFKAAVYRAKSLLG"
     gene            3895..4185
                     /locus_tag="PXC99_002286"
                     /pseudo
     CDS             3895..4185
                     /locus_tag="PXC99_002286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484718.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
     gene            4175..4894
                     /locus_tag="PXC99_002287"
     CDS             4175..4894
                     /locus_tag="PXC99_002287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HDL5418695.1"
                     /translation="MKFSKYQLLVNKICFICGKKDCPQMKKSKDYKDFLDALEKGDVD
                     KADKIYNTKFSQFSKSFGHEMEKNLEKNRIPPIYQGVPFDSFDLYQHYSYGNGEALNL
                     SSVGLSNKIRPLVNKDKAFGKSNGSIESRFISQYKNEGRTSFSNAYDFTKEASGIADP
                     LWALGTATISGELKDIQIFPGGIARGNIHYSIRDRFTDPFDTFNFTKGEWNPNGTPYI
                     IQDSWIKSVRFSIDKKIKITP"
BASE COUNT         1688 a          908 c          973 g         1352 t
ORIGIN      
        1 gaacaagttc tacaagcggt tgtcaagtgt tcatttgttc aatgaacagt tcattgtgaa
       61 taacaaaacc gcttgaatta caagcggtct attttgttgc gtaaatttac tgttagcgtt
      121 gagccataac cgactacgac cgctggcccg aagatattga cggcgagggg gacggcttct
      181 cgcttgcctc caaacggacg accactttta tgtcagccgg aatgacttta gtggagagtt
      241 cgcctggtaa agatattgtc gatctcaaac atatcccgaa aagtagccac gaagccccac
      301 cgactaccgg tattttaagc ctctacaatc gaggcgaccg cagacgcttt agcgaaacag
      361 ttgataggta agctatgaaa atccataccc aaatccgaaa agaaatcctt tcattattag
      421 aggcaaaatt aacggacatc gagcattttt ataacgggca accgaatttc attgatattg
      481 acgaacagca acttgccatc tctgtttatc ttgatgagat taaccgtcag gagcttacct
      541 tatgcgatga acagtggaca gctcaactta acatcacgat ttatctaaaa tcagttgatg
      601 aggcagaaga tgaattagat gagtgggccg aaaaaatccg tgaagtggtt gaaacatatt
      661 ctgcgtttga acatttagag ggcatcagcc tttctcaata tcaatacgaa caagatcaaa
      721 atcaaagaac ttggcactca gccacattga tttttgatgt tgaatactaa caagcaaata
      781 atccttatag gagaatctac aatggcaaaa acaacaaaag tccaaggcac aaaatttaga
      841 attggcattg gacgtgaagc ccaaaaggca attacggcta tcactttagc tacagcaacg
      901 cttactattg ccacatcagg ctataaaaaa ggcgatgcaa tcgaaattac cggttgtggt
      961 cagttagacg gcatttatcc tgtattatct gtaacaggcg atcaagtcaa attgtgcgaa
     1021 gaagtaaact ggacgggtaa agatttaccg gctaattaca ccaaagccaa agcagcttta
     1081 gtacaatact cagaccaatt ctgtgcggta aaaaacattg aaaaatctga tgatacgtta
     1141 agtaccgaag atgttacaac ggtctgctcg gaaggtacag aaaccgaacc cggagaaatt
     1201 gaatttggct caattaaact gagctttttt cacaagccaa gtacggaaat gcaaactcgc
     1261 ttacgcaaat tgttttatga caaatccacc tttgcgtaca aattagaatt acctgataac
     1321 cacggcacaa cctatggcga aggtttcatt gaggcgggta acggctttag tggcgaagtt
     1381 aaaggcaaat atgaaggctc ggtatcaatt aaaccaagca aacgtgatta tttgctagtg
     1441 taattacaaa atattgctcc aaatcgaccg cttgtaatat tgcaagcggt cttttttatc
     1501 ctaaatttta caaaaggaat cgacaatgac actccgtgaa aaactcctcg ccaacaaacc
     1561 aaaattacaa tctatcgaaa tcaacggtga gacctactac ctgcgtgaag ccactgttgg
     1621 cgatatgaat aagcagattt ttgaaacccg aagctggctc attcaacaag ctgaacaaga
     1681 aaatgttgaa ttaccggcag aagatgatga aacctttgac gaagctctca accgttttgg
     1741 cgaaaaatac cgccttgctc aatcggttgc ctaccgttta tgtgacgaaa acggtgcatt
     1801 actgtttaac ccacttaaca ttgacgatct caatgcgatt gccgaattag acagtaaagt
     1861 gattatcgac tttaaccaag ccgtgtccgc cccaaaagac tcagcgagcg aagaaagttc
     1921 caaataaccc tttcgctcgc actgggtaaa acccttgaag aaatcgaaca aatgcctgaa
     1981 cgccactttg ccgaatatca gcttttttat caagagcaac cttttgggct ttggcgtgag
     2041 gactatcgtg ctgctcaact tgcccactta accgcaatga tcaaccgtga cccaaaaggc
     2101 aaagcccctg aactctcgga atttatgccg ttttttaatc gggctgatga agtagaagca
     2161 aatgaagatg atggcgttgc ggattatttg gcgaaaaggt aaatctcttg tatttcattg
     2221 taattctgtc tataattggt gtaatacata gaaatacagg agagataaaa tggcgactat
     2281 caatgatgct ttcagtttta gaacaaatac cgaaataaaa aataccgcat ttgatgtaat
     2341 taaaaactat ggaatgacac cctctcaggt gtttaatatg tttttaaccg agattgcaaa
     2401 aacgaaaact attccgttaa gtttgaatta tcaacccaat cttgaaacaa aattggcaat
     2461 gcaagaagca aaatcaggta aaaatgaagt ttatgcctca cttgaagcat ttcataaagc
     2521 aatgttagcg gagtaaataa tgctacaaat ttcgccgaca aacgcatata aaagagactt
     2581 taaaaagatt gcagccgaat tagtcggtag ttcggaatat gtggaagtaa tgtattgcct
     2641 aataaaccaa ttaccattgg cggaaaaata tagagatcac ccactacaag gtgaatggca
     2701 aggctttaga gattgccata ttaagcctga tttagtgttg atttacgctg ttgaagataa
     2761 tctgctccgc cttgttcgtt taggatcgca cgctgaatta tttggataat ttctgtaaaa
     2821 actaaccgct tgcgattttg tgctgtgggc ggtatagttg gaatattaac aaaggaggga
     2881 aaaatgaaaa atgtacttct atttatcgta cactttttct taatcgcaat gctctcaatt
     2941 atcccaatat taattattct tggagcaatc gaaagagatc cttactatac tgcgtggatt
     3001 ttccttagcg tatttttagg cattggagca ttgttatatt ttgcaaccat tgtttctaag
     3061 ttaattaaca agggaaaaac acaaacatta gaagaaaaac gatatgcaga atattggaat
     3121 aatgtaaaag tcaatattcc caaatagtct aactgataaa tgaccaaaag ctcgctttat
     3181 gcgggctttt ttattggaga aaaacaatga gtggcttagg aaaattaacc gttaccttag
     3241 agcttgaaaa tgcaaaattt cagtccgcaa tgacgaaatc tgattatgag gcacaaaaat
     3301 ttgccaagaa ctttatccaa aatatggata gagctagaaa tcacgccaaa gaatttgccg
     3361 atcgctcaac ccaatattta aaaaacattg agcaagcggc aaagaacctc aataaaaatt
     3421 ctgaattttc atttttatcg actattggtg gacattatca atcaatgtct agtggcatat
     3481 tgagtgcggc aaaagcctat actgatattc aaaataaaat gaaattagta agcggtagtt
     3541 cagcagaggc agctaaacga ttaactgatg tgtttgatat tgcgactaaa acaagccaaa
     3601 gtacagaggc tgtttcaggt gtctatcaaa catttgctca aaatgcccaa tctctcggac
     3661 tggctcaaaa agatgtagca gaattaacta aaacggtctc tcaagccgtt gctgcaagcg
     3721 gcgcaagcag ttctgcagca agtaatgccc taacccaatt tggtcaatca cttttaatgg
     3781 gcaaaatgaa agcccaagaa tttaactcgc tcattactca aaccccaacc attattcaag
     3841 caatggcaaa aggtttggga atgacaatgg cagaatttaa agcagcggta taccgggcaa
     3901 aatctttact tggataacat tcaagggcaa ggttttgaga gagtggatac accccaaatc
     3961 ggcgatgtga ttttaataca ggtcggttct gatgtgccga atcacgcagc gatttatatt
     4021 ggtgaacaaa tggtaatcca ccatagcccg aaccgattat ctaagcgtga tttatatgac
     4081 ggttattggt tacgccatac ccacagtatt tggcggcata aactggcgga tagattggat
     4141 tttgacggca tatttaatga tataggagaa caatatgaaa tttagtaaat atcaattatt
     4201 agttaataag atctgcttta tttgtggtaa aaaagattgt ccacaaatga aaaagagtaa
     4261 agactacaaa gactttttgg atgctttaga aaaaggggat gttgataaag cagataaaat
     4321 atacaatacg aagttttcac agttttctaa atcttttggt catgaaatgg aaaagaattt
     4381 agagaaaaat cgtatacctc ctatttatca gggagttcca tttgattctt ttgacttata
     4441 tcagcattat tcttatggta atggagaggc attaaatctt tcatccgttg gattaagtaa
     4501 taaaattcgt cctctagtga ataaagataa agcatttggt aaatccaatg gaagtataga
     4561 aagccgattt atttcgcaat ataaaaatga aggacgcaca tctttctcca atgcttatga
     4621 ttttacaaaa gaagcatcgg gtattgcaga tccgttatgg gcgttaggaa cagctaccat
     4681 tagtggagaa ttgaaagata tacaaatttt tcccggtggt attgctaggg gaaatatcca
     4741 ttatagtatc agggacagat tcactgaccc atttgataca ttcaatttta ctaaaggaga
     4801 atggaaccca aatggaacac cttatattat tcaagatagc tggataaaat cggtacgatt
     4861 ttcgatagac aagaagataa aaataacacc ttaattatga tagtaatata aaacaattgg
     4921 c
//
LOCUS       DANLVT010000146         4858 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.146, whole genome shotgun sequence.
ACCESSION   DANLVT010000146 DANLVT010000000
VERSION     DANLVT010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4858)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4858)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4858
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.146"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(64..630)
                     /locus_tag="PXC99_002288"
     CDS             complement(64..630)
                     /locus_tag="PXC99_002288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418696.1"
                     /translation="MEGLIMGLQLIPHFPELAISRRTYLHDMPMYCFVSKNWIFSAKD
                     RAKREALGNLLACGGEMMKSFIFKRSLFSEIWFEDILLEDEEKELIRILYNKPEPEYQ
                     VEEKIDWEAREARRKQADYDKWQSYDERNPFHYQIFPTDTIAYAQQQVEKFIEDVDNF
                     LEWFYDDEVKRYILERNEIYQKKFDLVN"
     gene            complement(1163..1489)
                     /locus_tag="PXC99_002289"
     CDS             complement(1163..1489)
                     /locus_tag="PXC99_002289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5418697.1"
                     /translation="MLHSKGKILPKITLNEIETKERFAIALRKEMHAQYWTGKMVANA
                     LDVSEKTVKDWVAGKRLPSSLDLLALMRISSCVRQLVWDISKSEECYQDAEMLKQICF
                     VLLSNL"
     gene            1537..3168
                     /locus_tag="PXC99_002290"
     CDS             1537..3168
                     /locus_tag="PXC99_002290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HDL5418698.1"
                     /translation="MVTRTKNQPKNQAVSYIRMSTEHQEFSPDLQRCFIENYAKENGL
                     EIIREYIDEGKSGLTAEHRPQFLSMIQLVQSGQADFDHILVYDVSRWGRFMNIDESGH
                     YELICTYQGIKVHYCAEPFKGNDIASQIYKTMKRLSVGDYCRELGVKVFNGQKNLIQH
                     GFRQGGVAGFGLRRRLIDCQGNPKFDLQRGDRKSLQTDRVILVAGPKEEQEIVRQIYH
                     DFVYQHKTEQQIADSLNAQGIVTDRNTAWTKGVVHQILINEKYVGHNVWNKRSASKTR
                     EYKGKNPVEEWVRAENVFEAIVPQALFNAAQTIIHQRSARLSDDEMLEQLKLLLKEKG
                     KLSGLIIDEAENCPSSSAYSSRFGSLLNTYTLINYEPERDYHYVEINRLLRQQHKNFV
                     QQTLDTIIELGGVVLSDDVTDLVHINNEFTASIVLSRCRLTPSGSKRWLIRFDTSLNP
                     DITIAVRINESATEILDYYLLPTTEKVNEKLRLAESNPAELEIYRHDNLDRFFIMVER
                     ILVKEFIYAKRHHSNSSYRQNSGTQSQNAQSESLC"
     gene            3083..3976
                     /locus_tag="PXC99_002291"
     CDS             3083..3976
                     /locus_tag="PXC99_002291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL5418699.1"
                     /translation="MQNDTIQILPIDKIRVLNPRTRNQKVFADLVENIATIGLKRPIT
                     VTPSVDSAEYYDLLCGQGRLEACQVLGELFIPCRVVNANSEESYLISLVENIARRQHS
                     YMELLSGIKILNDRGYKPVDIARKIGFSKSHVNSILHLINAGEERLINAVEQGILPIT
                     IAISISRSDDQEVQKQLAELYTNGTLKSTDIAKIRNLIHRRNLAGKKANTGISGSIRS
                     SIYNPKTVVNIYKEETERQKMMIKQADYDEKQLSIILSCLNKLFEDKYFQLVLKSEHL
                     DDMPKDLSQRMLKQREGNIYA"
     gene            3969..4832
                     /locus_tag="PXC99_002292"
     CDS             3969..4832
                     /locus_tag="PXC99_002292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL5418700.1"
                     /translation="MPKHITYAFHNQLISLPIDEIIPLKKMDKNFEKSTKFQSILASI
                     REIGIVEPVVVYPEENNQYILLDGHSRVHALKKLGVDKVLCMISTDDEGFTYNKQINR
                     LTAVQENKMLMKTIERGVSDELIARTLNINLKALRQKMNMLNGITREVVDILANKQVS
                     KEIFRILRKMKPERQIEVAQMMIASNKFTLTYANMMLLSSRKEELVESHKSKTTNDDL
                     TDLSIMQKELERLKENYKISEEKLADLKMGLVVAKGYVKKLLNNAAVVDLLENDQSEI
                     YLTLKEVCDIQ"
BASE COUNT         1604 a          928 c          938 g         1388 t
ORIGIN      
        1 tatcaagtgt aaaaaaatat aaaagtcggc aataacatta ttttataata actaatgtga
       61 attctagttc actaaatcga atttcttttg gtaaatctca ttcctttcta atatatagcg
      121 ttttacctca tcatcgtaaa accattcaag aaagttatca acatcttcaa tgaacttttc
      181 tacctgttgc tgtgcatatg ctatcgtatc ggtagggaag atttgataat gaaacggatt
      241 gcgttcatca taactctgcc atttgtcata atcggcttgt ttacgccgcg cttctcttgc
      301 ctcccagtcg attttttctt ccacttgata ttctggctct ggcttattat acaaaatacg
      361 gatgagttcc ttttcttcat cctcaagcag aatatcttca aaccagattt cagaaaatag
      421 gctgcgcttg aaaatgaaag acttcatcat ttcccctcca cacgccaata agtttcccaa
      481 tgcttcccgt ttcgctctat cttttgccga aaatatccag tttttcgata caaaacagta
      541 cattggcatg tcatgcaaat aggttcttcg tgaaatggct aattcaggaa aatgaggaat
      601 aagctgtaac cccattatta agccttccat actgcacacg atcttactta attgtccgta
      661 atcgcgtaaa aaagcaatgt cagtttttat caaccacaac gataggctga ctaatatgaa
      721 cataaagatg agataataga tcggttttaa ggctaaggcg cgccgacaaa gccacattaa
      781 gagtggaatc gtaacgagat caaagaaaaa tgatgagtct atgatgattt ccttatgtga
      841 gttgatgaat aatcaggcat gaaggaaacc ttaaaaagga aaagtccctt cattaccact
      901 ttttaaaacc ttttaaggct taaaaatcaa aagtcgtaat gaagggacta ttgtccgtgg
      961 gcaaaaaggt attagttata gggggctttg tcaagcgaaa atttactgtg cattttctcg
     1021 ccaaaactga tttaagcctt gataaaatct cgaaagtacc ttgtcaagaa aaatcttttt
     1081 agtggtttga ttgctagttt tttgagcaaa actatgctgt aatgcagtaa aaatacagtt
     1141 tctatctgtg tttggaatcc agttacaaat tggagagtaa tacaaagcat atttgcttga
     1201 gcatctcagc atcttggtag cattcttctg attttgaaat atcccaaaca agctgccgta
     1261 cacatgatga aattctcatt aacgccaata aatctaggct acttggcaat cttttccctg
     1321 caacccaatc tttaactgtt ttctcactca catctaatgc attggcgacc attttccccg
     1381 tccaatattg agcatgcatt tcctttcgta acgcaattgc aaaccgctct ttcgtttcaa
     1441 tctcattgag tgtaattttg ggtaagattt taccctttga gtgcaacata tttcctcccg
     1501 attcctttat attggtgtag ataaggagtc attagaatgg ttacacgtac aaagaatcaa
     1561 cctaaaaatc aggcggtttc ctacattcga atgtcaacgg aacaccaaga attttcacca
     1621 gaccttcaac gttgctttat cgaaaattat gctaaagaaa atgggctaga aatcattaga
     1681 gaatacattg atgaaggaaa aagtgggcta accgcagaac accgcccaca attcctttca
     1741 atgatacaac tcgtacaaag tggacaagcc gacttcgatc atattttggt gtatgacgtg
     1801 agtcgttggg gtcggtttat gaatattgat gaatcggggc attatgaact gatttgtacc
     1861 taccaaggca ttaaagtcca ctattgcgcc gagccattca aagggaatga tattgcctct
     1921 caaatatata aaaccatgaa acgtttgtcg gtaggagact actgtcgtga actcggagtg
     1981 aaagtattta acggtcaaaa aaatctgatc caacatggat ttagacaagg tggggtagct
     2041 ggatttggat tgcgtaggag attgattgac tgtcaaggaa accctaaatt tgatctccaa
     2101 cgtggagata gaaagagcct acaaaccgac agagtgattt tggttgcagg cccaaaggaa
     2161 gagcaggaaa ttgtccgaca aatttaccat gattttgttt atcaacataa aacggaacaa
     2221 caaattgctg atagcttaaa tgcacaaggc attgttactg atagaaatac agcatggacg
     2281 aaaggcgtag tacatcaaat ccttattaac gaaaagtatg tcggccacaa tgtttggaat
     2341 aaacgtagtg catcaaaaac acgcgaatat aaaggtaaaa accccgtaga agagtgggtg
     2401 cgagctgaga atgtatttga agctatcgtg ccacaagcct tatttaatgc agcccaaacc
     2461 attattcatc aacgctccgc ccgattatct gacgatgaaa tgttagagca actcaagcta
     2521 cttttgaaag agaaagggaa gctgtctggc ttgatcattg atgaagccga aaattgtcca
     2581 tcaagtagcg cgtacagtag ccgatttgga agcctactta acacatatac tttaattaac
     2641 tatgaacccg aacgggatta ccactatgta gagatcaacc gattactccg tcagcagcat
     2701 aaaaatttcg tacaacaaac acttgatacc attattgaat tggggggagt ggttttgagc
     2761 gatgatgtaa ccgatttagt ccacatcaat aatgaattta ccgcctcaat cgtattaagt
     2821 cgttgccgcc taacgccatc aggaagcaaa agatggttga tccgatttga taccagttta
     2881 aatcccgaca taacaattgc agtgcgcatc aatgagagtg ccacagaaat tcttgattac
     2941 tacctgcttc ccacaactga aaaggtaaat gaaaaactac gattggctga gagtaatcct
     3001 gccgaacttg aaatctaccg ccatgataat ttagatcgct tttttattat ggttgaacgt
     3061 attttagtca aggagtttat ctatgcaaaa cgacaccatt caaattcttc ctatcgacaa
     3121 aattcgggta ctcaatccca gaacgcgcaa tcagaaagtc tttgctgatc tggtcgaaaa
     3181 cattgcaacg attggtctca agagacctat taccgtaacg ccatctgtcg atagtgctga
     3241 atattatgat ttgttatgcg gtcaaggtcg gcttgaggct tgtcaggtgc ttggtgagct
     3301 attcatacct tgtcgcgttg tgaacgcaaa tagtgaagaa agctacttga tcagccttgt
     3361 ggaaaatatt gccagacgtc agcattccta tatggagctg ctttcaggca tcaaaatact
     3421 caatgataga ggttataagc ccgttgatat tgctcgcaaa atcggtttct caaaaagcca
     3481 tgtcaacagt atcttacacc tcatcaatgc tggggaagag cgccttatca atgcggtaga
     3541 gcaaggaatt ttacccatta ccatcgctat ttcgatttct cgttcagacg atcaggaagt
     3601 tcaaaaacaa ctcgcggaac tttacaccaa tggtacattg aaaagcaccg atattgccaa
     3661 aatacgtaac ctgatccacc gtagaaatct tgctggtaag aaagccaata caggtatttc
     3721 tggaagtatt agatcatcta tttataatcc caaaactgtg gtgaatatct acaaagagga
     3781 aacggaaaga cagaaaatga tgatcaagca agcggactat gatgaaaaac aactctctat
     3841 tatcttgtct tgcttaaata aactctttga ggacaaatac tttcaactcg tccttaaatc
     3901 agaacattta gacgatatgc caaaagattt aagccaacga atgttaaaac aacgagaggg
     3961 aaatatttat gcctaaacat attacttatg cctttcataa tcagttaatt tcgcttccaa
     4021 ttgatgagat tattccatta aaaaagatgg ataaaaattt tgagaaaagc actaagttcc
     4081 aaagcattct ggcttcaatt cgtgaaatcg ggattgttga acctgtggtc gtctatccag
     4141 aagaaaacaa ccaatatatt ttgttagatg gccattctcg tgtacatgca ctcaaaaagc
     4201 taggtgtgga taaggtgctt tgtatgattt ctaccgatga tgaaggcttt acttacaaca
     4261 agcaaattaa ccgcttaacc gccgttcagg aaaataaaat gctgatgaaa accattgagc
     4321 gcggggtttc ggatgaactg atcgcaagaa cactcaatat caatctaaaa gcactacggc
     4381 agaaaatgaa tatgcttaat gggatcacaa gagaggttgt tgatatattg gccaataagc
     4441 aggtcagtaa agagatattt cggattttgc gcaagatgaa gcctgaacgc caaattgaag
     4501 tggcacaaat gatgatcgcc agtaataagt ttacattgac atacgccaat atgatgttgc
     4561 tcagttcacg caaggaggaa ttagtcgaaa gccacaagtc taaaaccacg aatgatgatt
     4621 taaccgatct ttccattatg caaaaagagc tagagcgact taaagagaac tataaaattt
     4681 ccgaagagaa attggcggac ttaaaaatgg gattggttgt ggcgaaaggg tatgtcaaaa
     4741 aactattgaa taatgctgcc gtggtagatt tgcttgaaaa tgatcagagt gaaatctatc
     4801 ttactcttaa agaagtatgt gatattcaat aatataatat ctagctaata accttaat
//
LOCUS       DANLVT010000147         4852 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.147, whole genome shotgun sequence.
ACCESSION   DANLVT010000147 DANLVT010000000
VERSION     DANLVT010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4852)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4852)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4852
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.147"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(136..846)
                     /locus_tag="PXC99_002293"
     CDS             complement(136..846)
                     /locus_tag="PXC99_002293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4189 domain-containing protein"
                     /protein_id="HDL5418701.1"
                     /translation="MFMVIQLALYNLQTYEVGRNATTIFMTTDKVYTGGSTWTYLFAD
                     ADNKITSVREMNGFGDVEKEFKCGEYKEAVTIASKEDLAKRKTQPRLWSSIYMSPEQN
                     MMWVTDNTSKNLENAKQDAFKQCEKNGGRNCQMILSFSNMCLAFAQGYKDGQGFEDFG
                     YGIVSSLAEENALENCNQKGGSSCLLSAPAVCAIPCDILSNNKCMYDQPQIIIPGKNN
                     NQPINPPANGNGEHWLSN"
     gene            complement(815..961)
                     /locus_tag="PXC99_002294"
     CDS             complement(815..961)
                     /locus_tag="PXC99_002294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418702.1"
                     /translation="MIKPLDSVYWRGKDVSEFFARKRLPDTAVQCVKDNELSYVYGYS
                     TSFV"
     gene            complement(1079..2296)
                     /gene="fabB"
                     /locus_tag="PXC99_002295"
     CDS             complement(1079..2296)
                     /gene="fabB"
                     /locus_tag="PXC99_002295"
                     /EC_number="2.3.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase I"
                     /protein_id="HDL5418703.1"
                     /translation="MKRVVITGLGVISSIGNNKEEVLESLKAGKSGIEFVPEFAEVGM
                     RSQVAGTIKLNPAELIDRKIYRFMGDAAAYAYLSMKEAIEDSGLTEEQVSNDRTGLVI
                     GAGTGSAHSQLVACDAVRGPRGVKAVGPYAVTKTMASSVSACLATPYKIRGVNYSISS
                     ACATSAHCIGHAMELIQLGKQDVVFAGGAEELSWECATEFDAMGAVSTKYNETPTKAS
                     RAYDANRDGFVIAGGGAVVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAPSGEGA
                     ERCMRQAMATVNGEIEYINVHGTSTPVGDVKELGAIRNVFGDKTPAISSTKSMTGHSL
                     GAAGAHEAIYSLLMLDNNFIAPSINIETLDEQAQGMNIVTERQDKALTTVMSNSFGFG
                     GTNACLVFQRYSK"
     gene            2557..>4852
                     /locus_tag="PXC99_002296"
     CDS             2557..>4852
                     /locus_tag="PXC99_002296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate cyclase"
                     /protein_id="HDL5418704.1"
                     /translation="MKTLTLTANKITAVEGAAIGANQGSFAQKLNSTKARIDQLNAYR
                     IERAINANNHHFMHVFSLIPLLIHLNHPVLPAYVENAPQGIWHFQLSDYQKQFLVSYR
                     FDEAISADHLGPHPSFDALYSMGSTGTITQTSCSDLDLWLCYPNHFTIEQYKLMELKI
                     NKLQEWAKTFQIDINIYLMNPEQFKSQTYNSSVTDEHSGSAQHFFLLDEFYRSAILLA
                     GKRLLWLHLHKNEYQNVHNNPEIDLTEWIDFGDFSSLSTSEFFGASLWQLYKGINNPY
                     KSAIKILLLECYAHTYPKTKLISKEFKKKLLSDNALEYHFDPYLAMLELVTEHLRSRK
                     EWVKLDRLRVCFYAKAVEGEINNNWRSRDLDELVNQWSWSEKQIQLLQNRQHWKIKQV
                     MNHENMLIDHLLQSYRNLIHFARKFHINPSIMTNDTDILMRKLYSVFEALPGKISLIN
                     HKISSNLAEKAITFIEAKVGSALQPGWYLVNQAPKSRYDSENRYVHYNKSPIKLIAWG
                     YFNGIINAATNLHTVSPNLDIEKLRQFITDLRLSFPIQAPEVTNDDMHHPNEIRNLVI
                     ALNLVQDPTEHIDELPKKVYPSDLFNFGKAQKTLVGSVSIIYRNVWNEIRTQHFDGED
                     AILKALKLVSNRIYQGNSSPQSVNVFCYSKYLRSELRDFVADLVHKCITIQTGCLLQE
                     NEFSTLKVAGKTWQFLFHKKTFSIKQIDEQQAVENLNSFAKTKQNAKSENEKKKEFPQ
                     QISEFASEGFLQFFFEDNVDNSFNV"
BASE COUNT         1570 a          980 c          792 g         1510 t
ORIGIN      
        1 ataaaaatgg ttttaaataa aattaaaaat aaattgtaaa tttttattta ccaagatttt
       61 tagcaaagtt ttcactaaaa atgaccgctt gcaggcaata aaaaagtgcg tttccgcact
      121 ttttactaaa atgatttaat tactcaacca atgctcaccg ttgccattag ctggtggatt
      181 aatcggttgg ttattattct tacctggaat aataatttga ggctgatcgt acatacattt
      241 gttgttcgac aatatatcac agggaatagc acatacggca ggggcagaaa gaagacaact
      301 tgaaccacct ttttgattac aattctctaa tgcattttct tcagcaagac tactaacgat
      361 accataccca aaatcctcga agccttgacc atctttataa ccttgtgcaa aagcaaggca
      421 catattacta aacgataaga tcatttggca attacgacca ccgttctttt cacactgttt
      481 aaacgcatct tgcttcgcat tttctaaatt tttagacgta ttatcagtca cccacatcat
      541 attttgttca ggtgacatat aaattgatga ccataaacga ggctgtgttt tacgctttgc
      601 taagtcctct ttactggcaa tggttaccgc ttctttatat tcaccacatt taaactcttt
      661 ttcgacatca ccaaaaccat tcatttcacg aacagaagtg attttattat cagcgtcagc
      721 aaaaagatat gtccaagtcg atccacctgt ataaacctta tctgttgtca taaatatagt
      781 ggttgcatta cgaccaactt cataagtttg caaattatac aaagctagtt gaataaccat
      841 aaacatagct taattcatta tcttttacgc attgaaccgc tgtatcaggt aaacgtttac
      901 gtgcaaaaaa ttcagataca tctttaccac gccaataaac actatctagt ggcttaatca
      961 ttgtagaaca agcggtcaaa aataatgaca aaataacaaa tagcaaagaa cttattttga
     1021 aatttataat aattacctca aaagaaaaaa gagcaagctt tcacttgctc tttttatgtt
     1081 acttagaata gcgttggaac actaaacacg cattagtacc accaaagccg aagctgtttg
     1141 acatcacggt tgttaatgct ttgtcttggc gttcagtcac aatattcata ccttgtgctt
     1201 gttcatcaag ggtttcaata ttaatgcttg gtgcaataaa attattatct aacattaata
     1261 atgaataaat tgcctcgtgc gcacctgctg cacctaatga gtgtccggtc attgatttgg
     1321 ttgatgaaat tgctggcgtt ttatcaccaa agacattacg gatcgcccct aactctttta
     1381 catcacccac tggagtagaa gtgccgtgta cgttaatata ctcgatttca ccatttacag
     1441 ttgccatcgc ctgtctcata caacgctcag caccttcacc acttggcgcg accatatcgt
     1501 aaccgtctga ggttgcccca tagcccacaa tttcagcata gattttggca ccacgagcaa
     1561 gagcgtgttc taactcttcc accacaacca ctgcaccacc accggcaatc acaaaaccgt
     1621 cacgattagc atcataagca cggctagctt ttgttggtgt ttcattatat ttagttgaaa
     1681 cagcacccat tgcatcaaac tcggttgcac attcccaaga aagttcttct gcaccacctg
     1741 caaacaccac atcttgttta cctaattgga ttaactccat cgcgtgtcca atacagtgtg
     1801 ctgaagtcgc acaagctgag ctgattgaat agtttacacc acgaatttta taaggtgttg
     1861 ccaagcatgc tgacacactt gatgccattg ttttggttac tgcgtaaggc ccaacggctt
     1921 tcacaccacg tgggccacgt actgcatcac aagctacaag ttgactgtgc gccgagcctg
     1981 taccagctcc gatcaccaaa ccggtacgat cgtttgaaac ttgttcttcg gttaagcctg
     2041 agtcttcgat tgcttctttc attgaaagat aagcgtaagc cgcagcatct cccataaaac
     2101 gatagatttt acggtcaatt aactcagccg gatttaattt aatcgtacct gccacttggc
     2161 tacgcatacc cacttcagca aactcaggca caaattcaat gcctgattta cctgctttta
     2221 gtgattccaa cacttcttct ttgttgttac cgatactgga aattacacct aatcctgtaa
     2281 taacgactct tttcattttg tttccttcat cattttgatc tgaaaaatac ttgattcagc
     2341 ttacacttgt tcactcaaat aagctactaa aacttgatta ttttacacaa tttcattact
     2401 ggtctgaact ctttctatca agatagcggt tgaatttcag acattttttg caaaataggg
     2461 aatgaaattt aatttcccga ttttttaccc tattacataa taatcacttt tccgctaaaa
     2521 tgctaaacag ttcacacttt agtaaggaaa gctgacgtga aaacattaac cctgacagcc
     2581 aacaaaataa cagccgtaga aggcgctgcc attggggcga accaggggag cttcgcccaa
     2641 aaattaaact ctactaaagc acgaattgat caacttaatg cataccgaat agaacgagct
     2701 atcaatgcta ataatcatca ttttatgcat gttttctctc tcattccatt gcttattcat
     2761 cttaatcacc ctgtgttacc ggcttatgtt gaaaatgcac cacaagggat ttggcatttt
     2821 caactctctg attatcaaaa acaatttctg gtttcttacc gttttgatga agcaatctct
     2881 gccgatcatt tgggccccca tcccagcttt gatgctcttt attcgatggg tagcaccggt
     2941 actattaccc aaacaagctg ttctgattta gatttatggc tatgctatcc gaaccatttt
     3001 acaattgaac aatataagtt aatggagctc aaaattaata aattgcaaga atgggcaaag
     3061 acattccaaa tcgacatcaa tatttattta atgaacccag aacaatttaa gagccaaact
     3121 tataacagta gcgtaaccga tgaacacagt ggttcagcac agcatttttt tctattagat
     3181 gaattttatc gttcagctat tttacttgcc ggtaagcgtt tactctggtt gcatttacat
     3241 aaaaatgaat accaaaatgt tcacaataac cctgaaattg acttaacgga atggattgat
     3301 ttcggcgatt tttccagcct ttcaaccagt gaattttttg gtgcaagctt atggcagctc
     3361 tacaaaggaa ttaataaccc ttataaatcg gcaattaaaa ttttattgct cgaatgctac
     3421 gctcacactt atcctaaaac aaagctcatc tccaaagaat ttaagaaaaa actactaagt
     3481 gacaatgctt tggaatatca ctttgatccc tacttagcca tgcttgaatt ggtaacagaa
     3541 cacttaagat cacgcaaaga gtgggtgaaa ttagaccgct tgcgagtctg tttttatgca
     3601 aaagcggttg agggagaaat aaataacaac tggagaagtc gtgatttaga cgagctggtt
     3661 aaccaatggt cttggtcaga aaaacaaatt caattacttc aaaaccgtca acattggaaa
     3721 attaagcaag tgatgaatca tgagaatatg ctgattgatc atttactaca aagttatcga
     3781 aatttaattc attttgctcg aaaatttcat attaatccga gcattatgac aaatgatact
     3841 gatattttaa tgcgaaaact ttattctgta tttgaagcac ttccaggaaa aatatcttta
     3901 attaatcata aaatatcgtc caatttagca gaaaaagcaa ttacatttat tgaagctaaa
     3961 gttggatctg cgttacaacc cggttggtat ttagttaatc aggcacctaa aagtcgttat
     4021 gactctgaaa atcgttatgt ccattataat aaaagcccga ttaagcttat tgcttggggg
     4081 tattttaacg gcattattaa cgcagcaact aatttacata ctgttagccc taatttagat
     4141 atcgagaaat tgcgacaatt tatcaccgac ttgcgcttat ctttcccaat tcaagcgccg
     4201 gaagtgacca atgatgacat gcatcaccct aatgaaattc gcaatttggt tatagcgctt
     4261 aatttagtac aagatccaac cgaacatatc gatgaactac caaaaaaagt ttatccaagc
     4321 gatctgttta attttggtaa ggcacaaaaa acgttagttg gtagtgtgag cattatttat
     4381 cgaaatgtat ggaatgaaat tcgaactcaa cattttgacg gtgaagatgc tattttaaaa
     4441 gcactaaaat tggtatccaa tcgaatttat caaggaaatt cttcacctca atcagttaat
     4501 gttttttgct atagtaaata tctacgtagt gagttacgtg attttgtggc agatttagtt
     4561 cataaatgta ttacaattca gactggttgt ttactgcaag agaatgaatt tagcacttta
     4621 aaagtagcag gaaaaacctg gcagtttctt tttcataaaa aaacatttag cattaaacaa
     4681 attgatgaac aacaagcggt tgaaaattta aattcttttg caaaaaccaa gcaaaatgct
     4741 aaaagcgaaa atgaaaagaa aaaagaattt ccgcagcaaa ttagtgaatt tgccagtgaa
     4801 ggctttttac agtttttctt tgaagacaat gtcgataata gttttaatgt at
//
LOCUS       DANLVT010000148         4815 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.148, whole genome shotgun sequence.
ACCESSION   DANLVT010000148 DANLVT010000000
VERSION     DANLVT010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4815
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.148"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            14..472
                     /locus_tag="PXC99_002297"
     CDS             14..472
                     /locus_tag="PXC99_002297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis protein CcmH"
                     /protein_id="HDL5418705.1"
                     /translation="MLLSVTVNAAPVELHQFDSPKQESDYRALIQELRCPQCQNNNIA
                     DSNATIATDMRAKTLELLKQGKSKDEVVDYMIERYGNFVTYDPPLTPATIMLWLLPLI
                     LIALGLGVVLRRKKNKPQAVNFEQNTAKPTTHLAQDEQERLNQILNKEEK"
     gene            469..1380
                     /gene="ccmI"
                     /locus_tag="PXC99_002298"
     CDS             469..1380
                     /gene="ccmI"
                     /locus_tag="PXC99_002298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcmI"
                     /protein_id="HDL5418706.1"
                     /translation="MNFWLAIIFVTLIVCGVAFYPLLKKNKQIDNTKRDSLNKAFYFD
                     RLKEVENEANEGVIDDPEQTKLELQKNLLDDIPHSTQSATSEKLTLGKSWFVALILFV
                     GGISFAIYSNVGSWFSNSMLDTTHQKLDSFYERLKTEETNPLSQEEMNQFAMALRVDL
                     QSNPNDDKKWYMLGQIGMALDDGQLAHDAFSKAAQLKPDNLDYKLSHAQLLLFSEAQE
                     DKKQGETLLKEIIRQDHTNFNALSLLAFHSFEKEDFKMAAMTWGMMLKLLPDEDPSKV
                     TVERSFNMALSNLSEAEKQELQKGEKK"
     gene            1377..1982
                     /gene="mog"
                     /locus_tag="PXC99_002299"
     CDS             1377..1982
                     /gene="mog"
                     /locus_tag="PXC99_002299"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HDL5418707.1"
                     /translation="MTACKPLSKEKLKIGLVSVSDRASQGVYSDQGIPELRAWLESAL
                     TEPFELETRLIPDEQAIIEQTLIELVDAHACHLVLTTGGTGPAKRDVTPDATLAVAHR
                     EMPGFGEQMRQVSLHFVPTAILSRQVGVIRHDSLILNLPGQPKAIKETLEGVKDEQGK
                     VLVKGIFSAVPYCLQLLSEIYVETHAAICESFRPKSARREN"
     gene            1992..2330
                     /gene="glnB"
                     /locus_tag="PXC99_002300"
     CDS             1992..2330
                     /gene="glnB"
                     /locus_tag="PXC99_002300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulatory protein P-II"
                     /protein_id="HDL5418708.1"
                     /translation="MKKIEAIIKPFKLDDVREALTDVGVSGMSITEIKGFGRQKGHTE
                     LYRGAEYAIDFLPKVKVEIVIPDELEEQCIEAIMETAQTGKIGDGKIFVYDVGRVIRI
                     RTGEENEEAI"
     gene            2411..2890
                     /gene="lspA"
                     /locus_tag="PXC99_002301"
     CDS             2411..2890
                     /gene="lspA"
                     /locus_tag="PXC99_002301"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HDL5418709.1"
                     /translation="MKTGLKFLWVSLIVIIIDLWSKYIVVQHFEFGESINILPIFNFT
                     YARNYGAAFSFLADHSGWQKYFFLGLAVVISSALVVALWKNQAVKKLENIAYALIIGG
                     AIGNAIDRAYNGYVVDFLHFYWDIYHYPVFNIADIAICVGAGLLILEAFITKKEPKK"
     gene            2901..3845
                     /gene="ispH"
                     /locus_tag="PXC99_002302"
                     /gene_synonym="lytB"
     CDS             2901..3845
                     /gene="ispH"
                     /locus_tag="PXC99_002302"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HDL5418710.1"
                     /translation="MKILLANPRGFCAGVDRAISIVELALEIHGAPIYVRHEVVHNKF
                     VVDGLKAKGAIFVEELHEVPDDAIVIFSAHGVSQVVRQEAKNRGLKVFDATCPLVTKV
                     HMQVARASKKGTKAILIGHEGHPEVIGTMGQYNNQEGGIYLVESVEDIANLPVSNNDE
                     LTFMTQTTLSIDDTIGVIEALKEKYPAIQGPRKNDICYATTNRQHAVRELAEQSQLVL
                     VVGSKNSSNSNRLAELASRMGVMSKLIDGPQDIDPTWLEGIETIGITAGASAPEVLVQ
                     SVISHLKTLGVTEVETLVGNEEDVVFEVPKELRIKEVK"
     gene            3845..4093
                     /locus_tag="PXC99_002303"
     CDS             3845..4093
                     /locus_tag="PXC99_002303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase assembly factor 2"
                     /protein_id="HDL5418711.1"
                     /translation="MTEINRFKLEWACRRGMRELDKMIMPFYQNHFNELNETQQQAFV
                     EMLNYSDPELFRWVMLQAPAPTEEIAELIRLMRDKIET"
     gene            complement(4300..>4815)
                     /locus_tag="PXC99_002304"
     CDS             complement(4300..>4815)
                     /locus_tag="PXC99_002304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5418712.1"
                     /translation="SANQYIFNSDWFTHNVPSLASIFEYVKPRRILEIGSFEGRSSVF
                     FIEEALKYQSQVEIHCIDSWEGGAEHQGVWDMGEIEQRFIHNVTLAQQKFQNVVLYKH
                     RGYSHQKMIELLANGYINYFDYIYIDGSHEAPDVLFDALLAHRLVRKGGVISFDDYLW
                     SPDETGKQRHY"
BASE COUNT         1513 a          975 c         1042 g         1285 t
ORIGIN      
        1 tctcagccta ataatgcttc taagtgtaac agttaatgct gctccggtag aactgcacca
       61 attcgacagc ccgaaacaag agtcggacta tcgtgcctta attcaagaac tgcgttgccc
      121 gcagtgtcaa aataataata tcgccgattc caatgcgact attgccaccg atatgcgggc
      181 aaaaacctta gaattgctca aacaaggcaa aagcaaagac gaagtggtgg attatatgat
      241 tgaacgctac ggcaatttcg tcacttacga cccgcctctc acaccggcaa ccattatgtt
      301 atggctgttg ccgttaattt taattgcctt agggctgggg gtggtgttgc gtagaaagaa
      361 aaacaaacca caagcggtca attttgagca aaatactgca aaaccgacca ctcatctcgc
      421 tcaagatgag caagaacgtc ttaaccaaat tctcaataag gaagaaaaat gaatttctgg
      481 ctggcaatta ttttcgttac actgattgta tgtggcgtgg cgttttatcc gttacttaaa
      541 aagaacaagc aaatcgataa caccaagcga gacagcttaa acaaagcctt ctattttgac
      601 cgcttaaaag aagtggaaaa cgaagcgaat gaaggggtga ttgatgaccc tgaacaaacc
      661 aaattagagc tacaaaaaaa cttgcttgat gatattccac acagcacaca aagtgccaca
      721 agtgaaaaat taacgctcgg caagtcgtgg tttgtggcat tgattttatt tgtcggcggt
      781 atcagctttg cgatttacag caatgtcggt tcttggttct ccaactcaat gttagacacc
      841 actcaccaaa aattagacag cttctatgag cgtttaaaaa ccgaagagac caatccgctc
      901 tcacaagagg aaatgaacca atttgcgatg gcattacggg tagatttaca aagtaatccg
      961 aatgacgaca aaaaatggta tatgctcggt caaatcggga tggcgttaga tgatggtcag
     1021 cttgcacacg atgcctttag caaagcggct caactcaagc cggataactt agattacaaa
     1081 ctcagccacg cccaactgct gctcttttcc gaagcacagg aagacaaaaa acagggtgaa
     1141 accttgttaa aagagattat ccgccaagac cacacaaact ttaatgcgtt aagtttattg
     1201 gcgttccact cctttgaaaa agaagatttc aaaatggcgg caatgacgtg gggaatgatg
     1261 ttaaaactac tgcctgatga agatcctagc aaagtaacgg tagaacgcag ttttaatatg
     1321 gcgttatcca atttaagtga ggcggaaaaa caagaattgc aaaaaggtga gaaaaaatga
     1381 ccgcttgtaa accacttagc aaagagaagt tgaaaatcgg cttggtgtcg gtttcagacc
     1441 gagcctcgca gggggtttat tcagaccaag gcattcccga attaagggcg tggcttgaat
     1501 ctgccttaac cgagccgttt gagctggaaa cccgcttaat tcccgatgag caagccatta
     1561 ttgagcaaac cttaatcgag ttagtcgatg ctcacgcttg ccatttggta ttaaccaccg
     1621 gcggcaccgg cccggcaaaa cgtgatgtca ccccagatgc cacccttgct gtcgcccacc
     1681 gagaaatgcc cggctttggc gaacagatgc gacaagtgag ccttcacttc gtgccaaccg
     1741 ccattctctc tcgccaagtg ggagtaattc gccacgacag tctgatttta aatctgccgg
     1801 ggcaaccgaa agcaattaaa gaaacgctgg aaggtgtgaa agatgaacag ggcaaagtat
     1861 tggttaaagg tatttttagt gccgtgccat actgtttaca acttttaagc gaaatttatg
     1921 tcgaaaccca cgcagctatt tgcgaaagtt tcagacccaa atcggcaaga cgagaaaatt
     1981 aaggctaaaa aatgaaaaaa atagaagcaa ttattaaacc ttttaaatta gacgatgtgc
     2041 gtgaagcctt aaccgatgtg ggtgtcagcg gaatgagtat taccgaaatc aaagggtttg
     2101 gcagacaaaa aggacatacc gagctttatc gtggggcgga atatgcgatt gattttctac
     2161 cgaaagtgaa agtcgaaatc gtgattcccg acgagttgga agaacagtgc attgaagcaa
     2221 ttatggaaac cgcccaaacc ggcaaaatcg gcgatggcaa gatttttgtg tatgatgtcg
     2281 ggcgggtgat ccgcattcgt accggcgaag aaaatgaaga agcgatttag ttttgcaaaa
     2341 aatccggcaa aaacgaccgc ttgcaggggg atttccatct actcttttta cattaaattt
     2401 tggatattaa atgaaaacag gcttaaaatt tctttgggtg agtttaattg taatcatcat
     2461 tgacctttgg tcaaaataca ttgtagtgca acattttgaa tttggtgaaa gcattaatat
     2521 tttgccgatt tttaacttca cttacgcccg aaactacggg gctgccttta gtttccttgc
     2581 cgaccattcc ggctggcaaa aatatttctt tttagggctg gcggtagtga tttccagtgc
     2641 tttagtggtg gctctttgga agaatcaagc ggtcaaaaaa ttagaaaata ttgcgtatgc
     2701 cttaattatt ggtggagcga ttgggaatgc cattgaccgt gcttacaacg gctatgtagt
     2761 tgatttcctt catttttatt gggatattta tcactaccct gtgtttaata ttgccgatat
     2821 tgcgatttgt gtgggtgcag gcttactgat tttagaagcc tttataacca aaaaagaacc
     2881 gaaaaaataa gagtgattaa atgaaaattt tattagcaaa cccacgcggt ttttgtgccg
     2941 gcgtggatcg agccatttcg attgttgaat tagccttaga aattcacggt gcacctatct
     3001 atgttcgcca cgaagtggta cataacaaat ttgtggtgga tggcttgaaa gccaaagggg
     3061 ctatttttgt tgaggagcta cacgaagtgc cggacgatgc tatcgtgatc ttctcagccc
     3121 acggggtgtc gcaagtagtt cgccaagaag ccaaaaatcg tggcttaaaa gtgtttgatg
     3181 ccacttgccc actcgtgacc aaagtgcata tgcaggttgc ccgagccagt aaaaaaggga
     3241 caaaagcaat tttaatcggt cacgaaggtc accctgaagt tatcggcaca atgggacaat
     3301 acaataacca agaaggtggc atttatttgg tagaatcggt ggaagatatt gccaacttgc
     3361 cggtttccaa caacgatgaa ttaactttta tgacgcaaac cacactttcc attgacgata
     3421 ccattggcgt gattgaggcg ttaaaagaga aatatccggc aattcaaggc cctcgcaaaa
     3481 atgatatttg ttatgctacc accaatcgcc aacacgcagt gcgggaactg gcagaacaat
     3541 cacaattagt gttagtggta ggttcaaaaa actcctcgaa ctcaaatcgt ttggcggaac
     3601 tcgcctctcg aatgggtgtg atgtcaaaac tgattgatgg tccgcaagat attgatccaa
     3661 cttggttgga gggtattgaa actatcggta ttaccgccgg tgcttccgct cctgaagtgt
     3721 tggtgcaatc agtaatttcg catttaaaaa cccttggcgt aaccgaagtt gaaaccttag
     3781 tcggcaacga agaagacgtg gtgtttgaag tcccgaaaga gttacgcatc aaagaggtaa
     3841 aataatgaca gaaatcaacc gctttaaatt agaatgggcg tgccgacgtg gtatgcgtga
     3901 gttagacaaa atgattatgc cgttttacca aaatcatttt aatgaactca atgaaaccca
     3961 acagcaagct ttcgttgaaa tgctcaatta cagcgacccg gaactgtttc gctgggtaat
     4021 gctgcaagca cctgccccaa ccgaagaaat cgctgaattg attaggttaa tgcgagataa
     4081 aattgagacc tagagctaat agattaacct cttctttggg gtaaatatat agctacttac
     4141 cccaaagaag actaaattca ttcaactttt acaaaataac cctaaactag aaaagttaat
     4201 cttccaattt aataatatgt tgctgataag ctattaaacc ttgtattaca tgcactttct
     4261 gctgataggt attgacatag tgatcaacag cgggttttac taataatgac gctgtttacc
     4321 tgtctcatct ggtgaccaaa ggtaatcatc aaaactaata acgcctcctt ttctcactaa
     4381 acgatgtgca agtaaagcat cgaacaacac atctggcgct tcgtgagatc catctatgta
     4441 aatatagtca aaataattta tatatccatt tgcgagaagt tcaatcattt tttggtgaga
     4501 atagccacgg tgcttatata acacaacatt ttggaatttc tgttgcgcaa gagtgacatt
     4561 atggataaat cgttgttcta tttctcccat gtcccaaact ccttgatgct ctgctccccc
     4621 ttcccaacta tcaatacaat gaatttcaac ttgtgattga tatttcaatg cttcttcaat
     4681 gaaaaagaca gatgatctac cttcaaatga tccaatttct aaaatcctcc gaggttttac
     4741 atattcaaaa atagaagcta atgaaggaac attatgagta aaccaatcag agttaaaaat
     4801 atattggttg gctga
//
LOCUS       DANLVT010000149         4766 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.149, whole genome shotgun sequence.
ACCESSION   DANLVT010000149 DANLVT010000000
VERSION     DANLVT010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4766)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4766)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4766
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.149"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            15..1175
                     /locus_tag="PXC99_002305"
     CDS             15..1175
                     /locus_tag="PXC99_002305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator"
                     /protein_id="HDL5418713.1"
                     /translation="MIEQSYKIALLFNANKIYDRGVMQGIGQFIQASQCTWDIFVEDD
                     FVYHKNSIESLSIDGIIADFDDLETVELLKDIDVPIVAVGGSYQNPDYYPDLPYVATD
                     NYALVEAAFLHLKQKGINQFAFYGCPAETEKHWAIERKNAFIQLMEKYEHHPNCYIGD
                     QFHSDNWVELQAKLGEWLQTLPAHTGIIAVTDARARHLLQTCEHLKIAVPEQLCVIGI
                     DNEELIQYLSRVSLSSVTQGTSQIGYHAAKLLYRKLNNLPVSTKPILIPPVKVEERRS
                     TDYRSLQDPMVIQAMHFIRHRACQGIKVEQVLDHLKISRSNLEQRFKQEMNKTIHQVI
                     HEEKLARATYMLKFTEISTQEIANVCGYPSLQYFYAVFKKEFGKTPKEFRQE"
     gene            1268..2266
                     /gene="gntR"
                     /locus_tag="PXC99_002306"
     CDS             1268..2266
                     /gene="gntR"
                     /locus_tag="PXC99_002306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate operon transcriptional repressor GntR"
                     /protein_id="HDL5418714.1"
                     /translation="MRKPKRPTLQDIATHLGITKMTVSRFLRDPNTVAKETGERIAQA
                     IELFGYIPNRAPDILSNAKSRAIGVLVPSLTNQVFADVIKGIEQITDQASYQTMLAHY
                     GYSEQKEEQRIESLLSYNIDGIILSENHHSPRTLKMLEVANIPVIEIMESGECGIQQA
                     VGFDNISAAQAMVETMIHRGCRQVVYFGARMDKRSQLKMQGYEQAMLKHGLSPHSITT
                     AEHSSFTLGASQLKQALQHIPQLDGIFCTNDDLAIGALFECQRLGIHVPQQIKIAGFH
                     GHDVGQSLTPQLASVITPRLEIGRVAAQELLNRIHGVPQQSSIINLGYQIHLGESV"
     gene            complement(2320..2835)
                     /locus_tag="PXC99_002307"
     CDS             complement(2320..2835)
                     /locus_tag="PXC99_002307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HDL5418715.1"
                     /translation="MANGKAFILMGVSSTGKTSVGTAVAQRLGIKLIDGDDLHPRANI
                     LKMASGTPLNDADRTPWLERINDAVFSFEQKSEKGIIVCSALKKKYRDQIRQGNADVT
                     FLFLHGSFELVLARMQQRKGHFMKPEMLQSQFNTLEIPQADEPDVIFIDIDGSFDEVV
                     ERCVKAVEPLL"
     gene            3022..4371
                     /locus_tag="PXC99_002308"
     CDS             3022..4371
                     /locus_tag="PXC99_002308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HDL5418716.1"
                     /translation="MLLFIMFAAIILLLVLIMKFKVHAFVALIIVSLLTALAAGIPVD
                     KILPTLLNGFGSTLASVALLVGLGAMIGRLLEITGGAKVLADTLINKFGKERAPFALG
                     VASLLFGFPIFFDAGLVVMLPIIFSVAKQFGGSVLRYAFPSAGAFAVMHAFLPPHPGP
                     VASGDLLGVNMGLLVLVGLVCAIPTWYIGTYLFSQFISKRIHVDLPKAFLNGLSANEM
                     AVQNPPSFGKVLTVLVLPIILILFDTGLNTLSVAKVIDGSEMWVQSLRLIGKTPVALL
                     ITLIVAIMLLRDNRSFDQIEKICNNALGPICSIVLVTGAGGMFGGVLRASGIGDVLSE
                     MMKDTGMPIVVAAFIIATVFRVAQGSATVALTTTAALIAPTVAAATDLSQFDLCFIVI
                     AIASGATVLSHVNDSGFWLMSRFLEMDEKTTLKTWTMLETAIGLTGFACALIGSWLL"
     gene            complement(4456..>4766)
                     /locus_tag="PXC99_002309"
     CDS             complement(4456..>4766)
                     /locus_tag="PXC99_002309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5418717.1"
                     /translation="RLVNRKLANTIQLKTKTKFISSMSELLKNMVLNHQGIAWLPEYS
                     ISEELHNKKVIILDKNELVIPIKSYIYRMNTRLNNAAERFWNNLQNIQFINEDILNKP
                     "
BASE COUNT         1264 a         1063 c         1036 g         1403 t
ORIGIN      
        1 tactggagga agtaatgata gaacaatctt ataaaattgc cttacttttt aatgctaaca
       61 aaatttatga cagaggagta atgcagggca ttgggcagtt tattcaagca tcacaatgta
      121 cttgggatat ttttgtggaa gatgattttg tctatcataa aaatagtatc gaaagcctgt
      181 cgattgacgg cattattgcc gattttgacg atttggaaac agttgagcta cttaaagata
      241 ttgacgtccc cattgtagca gtaggcggtt cttaccaaaa ccctgactat taccctgacc
      301 ttccttatgt tgctaccgac aattacgcct tagttgaggc agcattttta cacctaaaac
      361 aaaaaggaat caaccaattt gcgttttacg gctgtcctgc agaaacggaa aaacattggg
      421 cgatagagcg aaaaaatgcc tttattcagt tgatggaaaa atatgaacat cacccaaatt
      481 gttatattgg tgatcaattt cattcagata attgggttga attacaagcc aaattaggcg
      541 agtggttaca aaccttacca gcccacacgg gcattattgc cgttactgac gcaagggcaa
      601 gacacctgct tcaaacctgt gagcatttaa aaatcgctgt acctgaacaa ctttgcgtga
      661 tcggcattga taacgaagag ttgattcaat acctctctcg ggtttctctt tcttcagtca
      721 cacaaggaac atcacaaatc ggctatcacg ctgcgaagtt attatatcga aaattaaata
      781 atctaccggt ttcaaccaag ccgattttaa tcccgccggt aaaagtggaa gaacgccgtt
      841 cgaccgatta tcgttctttg caagacccaa tggtaatcca agctatgcac tttattcgtc
      901 accgagcttg ccaaggcatt aaagtagagc aagtactgga tcatcttaaa atttcccgct
      961 ctaaccttga acagcgtttt aagcaggaaa tgaataagac aattcaccag gtgattcacg
     1021 aggaaaaatt agcaagagca acatatatgc tcaaatttac cgagatttcg acccaagaaa
     1081 ttgccaatgt gtgcggttat ccctctttac aatatttcta tgccgtgttt aaaaaagagt
     1141 ttggtaaaac cccgaaagag ttcaggcaag agtagtaaca agcggtcaat ttcaccgaat
     1201 attttgcaat tattgcctta tcttcagtta taatcagcga aattaaattt tttcgttatc
     1261 tattccaatg agaaaaccga aacgcccaac tttgcaagac atcgctaccc atctcggcat
     1321 taccaaaatg acggtcagtc gctttttgcg ggatccaaac accgttgcca aggagaccgg
     1381 cgagcggatt gcacaagcga ttgagctgtt tggctatatc ccaaaccgtg caccggatat
     1441 tctctcgaat gccaaaagcc gtgcaattgg cgtgctggtt ccttcgctta ccaatcaagt
     1501 gtttgccgat gtgattaaag gcattgagca gattaccgac caagccagct atcaaaccat
     1561 gctcgcccac tatggttaca gcgaacaaaa ggaagagcag cggattgagt cgctgctttc
     1621 gtacaatatt gacggcatta tcttatcgga aaatcaccac tcgccccgca ccttgaaaat
     1681 gctggaagtg gcgaatattc cggtgattga gataatggaa agcggcgaat gtggcattca
     1741 acaagcggtc ggatttgaca atatttctgc ggctcaagca atggtcgaga caatgattca
     1801 tcgaggctgc cgacaggtgg tgtatttcgg ggcgagaatg gataaacgct ctcagctgaa
     1861 aatgcagggc tacgaacagg caatgctcaa acacggctta agcccacaca gcattactac
     1921 tgcagagcat tcttctttca cgcttggcgc aagccagcta aaacaagccc tgcaacacat
     1981 tccgcagcta gacggcattt tttgcaccaa tgacgatttg gcaatcgggg cattatttga
     2041 gtgccaacgg ttaggcattc atgtgccgca gcagattaaa atcgccggct ttcacggaca
     2101 cgatgtcggg caatccctca cgccacagct tgccagcgtc atcacacctc gccttgaaat
     2161 aggcagagtt gccgcccaag agctgctcaa ccgtattcac ggcgtaccac aacaaagctc
     2221 cataattaac ttgggctatc agatccattt gggggaaagt gtgtagcccg gacaagcggt
     2281 taaatttgca aaaaaatccg caaaatccac cacttgtgat taaagcaacg gctcaactgc
     2341 tttcacgcaa cgctccacca cctcgtcaaa actgccgtca atatcaataa atatcacatc
     2401 tggttcgtct gcctgcggaa tttccagcgt attaaattgg ctttgaagca tttccggttt
     2461 cataaaatgc cctttgcgtt gttgcattcg agccagcacc agttcaaacg agccgtgcaa
     2521 gaatagaaaa gtcacatcgg cattgccttg tcggatctgg tctcggtact ttttcttcaa
     2581 tgctgagcag acgataatcc ctttttcgct tttttgttca aaactgaaca ctgcatcgtt
     2641 aatccgctcc aaccacggtg tgcgatctgc atcattgagt ggcgtgccac ttgccatttt
     2701 cagtatattg gcacgagggt gtaagtcgtc cccatcaatc aattttattc ccaaccgctg
     2761 tgcgactgcc gttcccacgc tggttttgcc ggtgctggac acgcccatca aaataaatgc
     2821 tttgccgttt gccattgaat ttccttgtgt tactggtaat gttaacttag ccgttaatgt
     2881 aacaggttat gctgaaaaat catctgctat ttccagaaaa cttgaagtag atcacatttt
     2941 taaaataaaa gccctgcaac cgtttactct aaactgcttt ttggttatgt taccgataac
     3001 aattcaacct taggagatcc tatgttactg ttcattatgt ttgctgccat cattttattg
     3061 ctggtgctga ttatgaaatt taaagtccac gcttttgtgg cattgattat tgtgagcctg
     3121 ctcactgcat tagctgccgg tattccggta gataaaatcc tgccaacatt gttgaatggt
     3181 tttggtagta cgctggcatc agtggcgtta ctggtggggc ttggggcgat gattggtcgc
     3241 ttgcttgaaa tcaccggcgg ggcgaaagtg cttgcggata cgcttatcaa taaattcggc
     3301 aaagaacgtg cgccttttgc gttgggcgtt gcctcgctgt tattcggctt cccgattttc
     3361 tttgatgccg gcttggtggt gatgttaccg attattttta gcgtggcaaa acagttcggc
     3421 ggttcggtgt tgcgctatgc gtttccgtct gccggtgcgt ttgcggtaat gcacgccttt
     3481 ctacctccgc accccggccc ggttgcctcc ggcgatctgc ttggtgtgaa tatggggctg
     3541 ttagtcttgg tgggcttggt ttgtgcaatc ccaacgtggt atatcggcac ttacctgttc
     3601 agccaattta tcagcaaacg cattcacgtt gatttgccga aagcgttttt aaacggctta
     3661 tcggcaaacg aaatggcagt acaaaacccg ccaagttttg gcaaggtact cacggtgttg
     3721 gtgctgccga ttatcctgat tttgtttgat accggcttga ataccctctc cgttgctaaa
     3781 gtgattgatg gcagtgaaat gtgggtgcag agccttcgct taatcggcaa aacccctgtt
     3841 gctttactga ttaccttaat tgtggcgatt atgctgttgc gggataatcg cagtttcgac
     3901 caaatcgaaa aaatctgtaa caatgccctt ggcccaatct gctcgattgt cttagtaacc
     3961 ggtgcaggcg gaatgtttgg tggcgtgttg cgtgccagcg ggattggcga tgtattatcg
     4021 gaaatgatga aagacaccgg aatgccgatt gtggttgccg cctttattat tgctacggta
     4081 ttccgtgtcg cacaaggctc ggcaaccgtt gctttaacca ccacagcagc gttgattgcg
     4141 ccaactgtgg cggcagcgac tgatttaagc cagttcgacc tctgttttat cgtgattgct
     4201 atcgcctccg gtgcgacggt gctttcccac gtcaatgact ccggtttctg gctgatgagc
     4261 cgtttccttg aaatggacga aaaaactacc ctcaaaacgt ggacaatgct tgaaactgcc
     4321 atcggtttaa ccggttttgc ctgtgcattg attggcagct ggttactcta attccaaccc
     4381 tgacaagcgg tctgttttct tctaaaattt gcaaaatttg gcagagaatc gaccgctttt
     4441 tcttattata gaatgttagg gtttatttaa tatatcttca tttataaact gaatattttg
     4501 taaattattc caaaaccttt ctgctgcatt atttagtctc gtattcattc tgtaaatata
     4561 actttttatt ggaataacta attcattttt gtctagtatg attacttttt tattgtgtaa
     4621 ttcttcacta atagaatatt cagggagcca tgcaatgcct tgatgattta gtaccatatt
     4681 ttttaataat tcagacattg atgaaataaa ttttgttttt gtttttaatt gaatcgtatt
     4741 agctaacttt ctattcacta agcgtc
//
LOCUS       DANLVT010000150         4723 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.150, whole genome shotgun sequence.
ACCESSION   DANLVT010000150 DANLVT010000000
VERSION     DANLVT010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4723)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4723)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4723
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.150"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            141..4037
                     /gene="purL"
                     /locus_tag="PXC99_002310"
                     /gene_synonym="purI"
     CDS             141..4037
                     /gene="purL"
                     /locus_tag="PXC99_002310"
                     /gene_synonym="purI"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HDL5418718.1"
                     /translation="MTIQTFRGSPALSAFRIQQLLQKFQQNQLPVKSVYAEFLHFVAL
                     NRPLVADEENKIKELLHYGPTLEEDEPTGFCLIVTPRIGTISSWSSKATDIAHNCGLA
                     AVERIERGTAYYLEFSETPNESQLTTLKGLLHDRMMETVLDNESQAEQLFAQQEPKPF
                     TSVDILGGGRKALEEANINLGLALADDEIDYLVENFTQLGRNPNDIELYMFAQANSEH
                     CRHKIFNADWTIDGVKQEKSLFKMIKNTFEKTPDYVLSAYKDNAAVMEGSTVGRFFPD
                     QDGQYRYHQEDAHILMKVETHNHPTAISPFPGAATGSGGEIRDEGATGRGAKPKAGLT
                     GFSVSNLVIPKFEQPWENPLSKPNRIASALDIMIDGPLGGAAFNNEFGRPALLGYFRT
                     YEEKVNSFAGEEIRGYHKPIMLAGGIGNIRAEHVQKGEIPVGAKLIVLGGPAMNIGLG
                     GGAASSMASGKSKEDLDFASVQRENPEMERRCQEVIDRCWQMGAENPILFIHDVGAGG
                     LSNAMPELVHDGECGGKFDLRNILCDEKGMSPLEIWCNESQERYVLAVSPEKLDIFTA
                     LCERERAPFAVIGEATKEKHLTLADPHFDNKPIDLPMNVLLGKTPKMQRDVLSKTVKN
                     PPLATADIDLKEAFHRVLRLPAVAEKTFLITIGDRSVTGMVAQDQMVGPWQIPVADCA
                     VTTASLDSYHGEAMSIGERSPVALLDFAASARLAVAESITNIAATNIGDIKRIKLSAN
                     WMSAAGHEGEDAGLYEAVKAVGEELCPELGITIPVGKDSMSMKTTWEENGEQKSVTAP
                     LSLVISAFARVEDVRKTVTPQLRTDKGDTRLLLIDLGEGNNRLGATALAQVYKQLGDK
                     PADVVNVARLKGFFNAMQTLVAQGKLLAYHDRSDGGLITTLAEMAFAGNCGISVEIDR
                     LVDDLAVLFNEELGAVIQVRTEELSEVQAVLNAENLANLTFDIGTAVESDSFEITRNG
                     TTVFSQKRSELRGIWAELTHQMQRLRDNPECADQEFAAKKDPNNKGLSAFLTYDVNED
                     IAAPYINKGVKPSVAILREQGVNSHYEMAAVFDRAGFNAIDVHMSDLISGRRNLNDFN
                     AMVACGGFSYGDVLGAGGGWAKSILFNPMLRDQFSKFFANPNTLALGVCNGCQMVSNL
                     AEIIPGTENWPRFVRNKSERFEARAAMVKINDTNSLWFNGMAGSHMPIAVSHGEGQVE
                     FKNPQQLANLQQQNLVIAQYVDSHLNPTEQYPANPNGSALGITAIGNTDGRVAIMMPH
                     PERVFRAVSNSWCPEDWTEGGAWMRLFRNARVALKY"
     gene            4392..4574
                     /locus_tag="PXC99_002311"
                     /pseudo
     CDS             4392..4574
                     /locus_tag="PXC99_002311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248253.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
BASE COUNT         1324 a         1060 c         1141 g         1198 t
ORIGIN      
        1 tattcattag tattgaacaa atttatttga tactaatgaa taaatgtatc taacagcaaa
       61 cgtctgacaa atatagcaat cgtttgcgca atcgtttata atcggtttag tttttcatct
      121 taaataggaa aatccaaaga atgacaatcc aaaccttccg tggctcgcct gccttatctg
      181 cttttcgcat tcaacaactt ctgcaaaaat tccaacaaaa tcaattacct gtaaaatcag
      241 tttatgcgga gtttttgcat tttgtggcat taaatcgacc gcttgtagcc gatgaagaaa
      301 acaaaatcaa agagttattg cactacggtc caacgctgga agaagacgag ccgacagggt
      361 tttgcctgat tgttacccct cgtatcggca cgatttcctc gtggtcgtct aaggcaaccg
      421 acatcgccca taactgcggt ttggcagcag tagagcgaat tgagcgtggc acggcatatt
      481 atttagaatt ttctgaaacg ccgaacgaaa gtcaacttac gacgttgaaa ggcttattac
      541 acgaccgtat gatggaaacg gtgctggata acgaaagcca agccgaacag cttttcgctc
      601 agcaagagcc gaagccgttt acttcggtgg atattttagg cggtggtcgc aaggcactgg
      661 aagaagcgaa tatcaactta ggtttagcgt tggcggacga tgaaattgat tacttggtgg
      721 aaaactttac ccaacttggg cgtaacccca atgatattga actctatatg ttcgcccaag
      781 ccaactcgga gcattgccgc cacaaaattt ttaatgcgga ttggacgatt gatggggtaa
      841 aacaggaaaa atccctgttt aagatgatta aaaacacctt tgagaaaacc ccggactatg
      901 tgctttccgc ctacaaagac aatgcggcgg tgatggaggg ctcaacggtt gggcgtttct
      961 tccccgacca agatggacaa tatcgctatc atcaagaaga tgctcatatt ttaatgaaag
     1021 tagaaactca caaccaccca accgccatct cgccattccc gggagcggcg accggttcgg
     1081 gcggtgaaat tcgtgatgaa ggggcgacag ggcgtggggc gaaaccgaaa gcgggcttga
     1141 cgggtttttc ggtctctaac ttagtgatcc caaaatttga acagccgtgg gaaaacccgc
     1201 tttccaagcc gaatcgcatt gcctccgcac tggatattat gattgatggc ccactaggcg
     1261 gagcggcatt taacaatgaa tttggtcgtc ctgcgttatt gggctacttc cgtacttacg
     1321 aagaaaaagt gaacagcttc gcaggcgaag aaattcgtgg ctatcacaag ccgattatgt
     1381 tagcaggcgg tatcggcaac attcgtgccg aacacgttca aaaaggcgaa atcccggtgg
     1441 gagcgaagtt gatcgtgctt ggtggcccgg caatgaacat cggcttaggc ggtggggcgg
     1501 catcgtcaat ggcatcgggg aaatcgaaag aagatttgga ttttgcctcg gttcagcggg
     1561 aaaaccctga aatggaacgc cgttgccaag aggtgatcga ccgttgctgg cagatggggg
     1621 cggagaaccc aattttattt attcacgacg tgggggctgg cggtttatca aatgcgatgc
     1681 ctgaattggt tcacgacggc gaatgtggcg gtaagtttga tttgcgtaac atcttgtgcg
     1741 atgaaaaagg aatgtcgcca cttgaaattt ggtgtaacga atcgcaagag cgttatgtgc
     1801 ttgccgtttc ccctgaaaaa ctcgacattt tcacagcatt gtgcgaaagg gaaagagccc
     1861 catttgcggt gattggcgag gcaacgaaag agaagcattt aacccttgct gaccctcatt
     1921 ttgacaataa accgattgat ttgccgatga atgtgttgct cggcaaaacg ccaaaaatgc
     1981 agcgagatgt tttgtcaaaa actgtgaaaa atccaccgct tgcaaccgct gacatcgact
     2041 tgaaagaggc gttccaccgt gtgctacgct tgcctgcggt ggctgaaaaa accttcctga
     2101 ttaccatcgg cgatcgctca gtaacgggaa tggtggcaca agatcagatg gtcggcccgt
     2161 ggcaaattcc tgtggcagat tgtgccgtaa ccaccgcttc attagacagc tatcacggtg
     2221 aagcaatgtc aattggcgag cgatcacctg ttgctttgct tgactttgct gcctcagctc
     2281 gcctcgccgt ggcagaaagc atcaccaata ttgccgccac taacattggc gacatcaaac
     2341 gcattaaact ctcggcgaat tggatgtcgg cggcagggca cgagggcgaa gacgcagggc
     2401 tttacgaggc agtaaaagcg gtgggcgaag agctttgccc tgaattaggc ataaccattc
     2461 cggtaggcaa agactcaatg tcgatgaaaa ccacttggga ggaaaacggc gaacagaaat
     2521 ctgttactgc tccgctttcg ctcgtgattt ccgctttcgc tcgtgtggaa gatgtgcgta
     2581 aaaccgttac cccacaactt cgcaccgaca aaggcgatac ccgcttgttg ctgatcgacc
     2641 tgggcgaagg caacaaccgc ttgggtgcaa ccgcacttgc tcaagtttac aaacaacttg
     2701 gcgacaaacc tgccgatgtg gtgaatgtgg ctcgcttaaa aggcttcttc aacgcaatgc
     2761 aaacccttgt cgcacaagga aaattgcttg cctaccacga ccgctcggac ggtggtttaa
     2821 tcaccacact ggcggaaatg gcgtttgcag ggaattgcgg aatttcggtg gaaatcgacc
     2881 gcttggtgga cgatttagcc gtgttattca acgaagaact gggggcagta atccaagttc
     2941 gcaccgaaga attgagcgag gtgcaagcgg tgttaaatgc cgaaaatctt gcaaatctca
     3001 cctttgatat tggtacagcg gttgaaagcg acagctttga aattacccgc aacggcacaa
     3061 cagtatttag ccaaaaacgt tccgaactgc gtggcatttg ggcggaactc actcatcaaa
     3121 tgcagcgttt gcgagacaac cctgaatgtg cagaccaaga atttgcagcg aaaaaagacc
     3181 cgaataacaa aggcttatcc gcatttttaa cttacgatgt gaacgaagac atcgccgccc
     3241 catacatcaa caaaggcgta aaaccgagtg tggcgatttt gcgtgagcaa ggtgtaaaca
     3301 gccactacga aatggcagcc gtctttgacc gtgccggttt caacgccatt gacgtgcata
     3361 tgtcagactt gatttcaggc agacgcaacc tcaacgactt caacgcaatg gtggcgtgcg
     3421 gaggcttctc ttacggcgat gtcttaggtg caggcggcgg ctgggcgaaa tcgattctgt
     3481 tcaacccaat gctgcgtgac caattcagca aattcttcgc caacccgaac acgctggcat
     3541 taggggtatg taatggttgc caaatggtct ccaatctagc ggaaattatt ccaggcacag
     3601 aaaactggcc acgcttcgtg cgtaataaat ccgaacgttt tgaagcccgt gctgcaatgg
     3661 tgaaaatcaa cgacaccaac tcactttggt tcaacggaat ggcaggcagc catatgccga
     3721 ttgcggtttc acacggtgaa ggacaagttg agttcaaaaa tccacagcaa ttagcgaact
     3781 tgcaacagca aaatctcgtg atcgcacaat atgtggatag ccacctcaac ccaaccgaac
     3841 aatacccagc caacccgaac ggatcggcgt tgggtatcac cgctatcggt aatacagacg
     3901 gacgagtcgc tattatgatg ccacaccctg aacgtgtgtt ccgtgcggtc agtaactctt
     3961 ggtgcccaga agattggacg gaaggtggag cgtggatgcg gttgtttaga aatgcgagag
     4021 tggcgttgaa gtattaaaaa tctaccttcg tagtgatctg cccccatagg gggcgattaa
     4081 aattcgaatt catagaaccc gaatttttat atatctgata aacgaagttg tttatccttc
     4141 gtgcttttcc tgatatttca agtactttct tatcatttct gcattgacat ctacggtgtc
     4201 tacgcagtag cctcttgcca caaaagtggg ttgccccaca atttatgctt acgtaaatag
     4261 ggaaacttat tgaaaaatct tattggaccc tgttcaccct tttaaatgcc ccattacgtc
     4321 ttatacagaa aatgaacgtg atttatttga acggtcaatt ctaccttaat agaaagtggt
     4381 ttttagttag caatcaaaat cacattaacg gaattgagaa tttggagagt caggcaaaat
     4441 gctatttgcg taaatttaac ggcgttccta aagtacatga attctatttg aaagaatgca
     4501 gatggcgttt taatcacagt aacttaaaat atcaagtttt ctttttaaaa caattggtta
     4561 aattgagttt ctaggatagc cccttatttt tataatcctc tatttaagtg catatttcta
     4621 tttatgctaa tcgtctaacg tatcctttta ttataatatt gaacatgatt aatattttcg
     4681 tcttgtgcta tactagactc gtgcaataaa ggcacacttc ttt
//
LOCUS       DANLVT010000151         4660 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.151, whole genome shotgun sequence.
ACCESSION   DANLVT010000151 DANLVT010000000
VERSION     DANLVT010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4660
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.151"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..317
                     /gene="trxA"
                     /locus_tag="PXC99_002312"
     CDS             <1..317
                     /gene="trxA"
                     /locus_tag="PXC99_002312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HDL5418719.1"
                     /translation="HTTDATFEQDVLKSDVPVLLDFWAPWCGPCRMIGPVLDDLSVDA
                     QFDGKVKIVKMNVDENPSVPAQFGVRSIPFLLLFKNGEVIAQQVGAIPHAQMAEFIKQ
                     AL"
     gene            488..1711
                     /gene="hflK"
                     /locus_tag="PXC99_002313"
     CDS             488..1711
                     /gene="hflK"
                     /locus_tag="PXC99_002313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease activity modulator HflK"
                     /protein_id="HDL5418720.1"
                     /translation="MSWNESGNQQDPWGKPGQKKAEPKPEQQEQGSQQEPTNNQRNEQ
                     QPPDLEEVFSSLLKKMGGGKGPNNSSNQPSASLGKFLPVVLGLAAVVWVGSGFYTVQE
                     AERGVVTRLGKLNDIVLPGLNWKPTFIDSVTRVNVERVSELNTSGSMLTQDENMVQVE
                     MTVQYRVEDPAKYLFSVSNPDDSLKQATDSALRYVIGHMTMDEILTTGRATVRERTWS
                     TLRDIIKTYDMGLLVTDVNFQYARPPEEVKAAFDDAIKAQEDEQRLIREAEAYARGEE
                     PIARGQAQRTIEQAQAYKEAVVLNAKGEVERLSQLLPEYKASPELTRERLYIQTMEKV
                     MKNTPKVVMDSSGNNLNVLPFDKLMNSSSVIKAEQPAAAQVVTPQVVQPQVQPRTQIQ
                     PQQAEQQEPTRKGRF"
     gene            1714..2601
                     /gene="hflC"
                     /locus_tag="PXC99_002314"
     CDS             1714..2601
                     /gene="hflC"
                     /locus_tag="PXC99_002314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflC"
                     /protein_id="HDL5418721.1"
                     /translation="MRRLLVPILAVVAFVVLQAITIVNEGERGIMLRFNKVHRDSDQK
                     VVVYEPGIHFKVPFIDSLKVLDARIQTLDGQEDRFVTVEKKDLLVDSYVKWRISDFGQ
                     FYTSTGGDYQKAADLLRRKVGDRLRSEIGSRTIKDIVSGSRGELMAGAQKALNAGEDG
                     AERLGIEVVDVRVKQINLPNEVSSSIYQRMRAERDAVAREHRSQGNEKAEVIRAEVDK
                     KVVLILANANKTAQALRGEGDAQAAKLYSEKFGNEPEFYSFIRSLKAYEDSFAEGQNN
                     MMLLKPNSEFLRFMQAPTK"
     gene            2775..4073
                     /gene="purA"
                     /locus_tag="PXC99_002315"
     CDS             2775..4073
                     /gene="purA"
                     /locus_tag="PXC99_002315"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010869263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HDL5418722.1"
                     /translation="MGKSVAILGAQWGDEGKGKIVDLLTDRVKYVVRYQGGHNAGHTL
                     IINGEKTVLRLIPSGILRDNVTCLIGNGVVLSPEALMKEMGELEERGINVRERLKISE
                     ACPLILPYHVAMDHAREAALGKNKIGTTGRGIGPAYEDKVARRGLRVSDLFDKEHFAA
                     KLKDILDYYNFQLVNYYKVEAVDYQKTLDDVFAIADVITGMVADVTTLLHEARENGDN
                     ILFEGAQGTMLDIDHGTYPFVTSSNTTAGGVATGSGYGPRHLDYVLGIIKAYCTRVGS
                     GPFTTELFDDVGAEIARKGNEFGAVTGRPRRCGWFDAVAVRRAVQINSISGFCMTKLD
                     VLDGFKELKICVAYKMPNGKIVEYAPLAAKDWEGVEPIYETMPGWSENTFRVTKREDL
                     PQAALDYIKRIEELVGVPVDILSTGPDRVETMILRDPFAA"
     gene            complement(4233..4303)
                     /locus_tag="PXC99_002316"
     tRNA            complement(4233..4303)
                     /locus_tag="PXC99_002316"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4273..4275),aa:Arg,seq:tct)
     gene            complement(4452..>4660)
                     /locus_tag="PXC99_002317"
     CDS             complement(4452..>4660)
                     /locus_tag="PXC99_002317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418723.1"
                     /translation="YVVGTGDDTDGEVTNFVIITSEYKYIDAQSAKEITDAPLTKEDI
                     GKTPTQIMLGRIYKYLKETGQIVV"
BASE COUNT         1429 a          843 c         1072 g         1316 t
ORIGIN      
        1 ttcatacaac agatgctaca tttgaacaag atgttttaaa atcagatgta ccggtattat
       61 tagacttctg ggcgccttgg tgtggtcctt gccgtatgat cggccccgta cttgacgatt
      121 tatctgttga tgcacaattt gatggtaaag taaaaattgt caaaatgaac gtagatgaaa
      181 atccatctgt accagcacaa tttggcgtac gcagcattcc atttttacta ttattcaaaa
      241 atggtgaagt gattgcccag caagttggtg caattccgca cgcccaaatg gctgaattta
      301 tcaaacaagc attataattt taagagcaat actagggcga atttatcgcc ctattttttt
      361 gcaaataaat agtgaaaaaa gaccgcttgt ttcagataaa cctagtcaaa agcttactaa
      421 ataggtacaa tcactaactt gcattctaag ctttaaagtg cgattcgatt ttattttgga
      481 gatatttatg tcgtggaatg aatcaggcaa tcagcaagat ccttggggta aaccggggca
      541 gaaaaaagct gagccaaagc ctgagcaaca agaacagggt tcacaacaag agccgaccaa
      601 taatcaaaga aatgaacaac agccccctga tttagaagaa gtatttagca gtttattaaa
      661 aaaaatgggg ggtggaaaag ggcctaataa tagttcaaat caacctagtg caagcttagg
      721 gaaatttcta cctgtggttt taggtcttgc agcagtagtt tgggttggct caggttttta
      781 cactgtgcaa gaggctgaac gtggtgtggt tactcgttta ggtaagctga atgatatcgt
      841 gttgccaggg ttgaattgga aaccgacttt tattgattcg gttacaagag taaacgtaga
      901 acgtgtttca gagctgaaca ccagtggctc aatgctgact caagatgaaa atatggtgca
      961 ggtagaaatg acggttcagt atcgtgtgga agacccggct aaatatctgt ttagtgtgag
     1021 caaccctgat gacagcttaa aacaagcaac agacagtgcc ttgcgttatg tgattggtca
     1081 tatgacgatg gatgaaattt taaccacagg gcgtgcaacc gtgcgtgaaa gaacgtggtc
     1141 gacattgcgt gatattatca aaacctatga tatgggttta ttggtaacag acgtaaactt
     1201 ccaatatgca cgaccgcctg aagaggtgaa agccgccttt gatgatgcaa tcaaagcaca
     1261 agaagatgag caacgcttaa ttcgtgaagc ggaagcctat gcaagaggtg aagagccgat
     1321 tgcacgtggc caggcacagc gtacgattga gcaagctcaa gcttacaaag aagcagttgt
     1381 gttaaatgcg aaaggggaag tggagcgttt gagtcaatta ttacctgaat ataaagcctc
     1441 tccagagctg actcgtgaac gtttatatat ccagacaatg gaaaaagtca tgaaaaatac
     1501 gccgaaagtg gtgatggatt caagtggtaa taatttgaat gtattgcctt tcgataagct
     1561 aatgaattct tcatcggtaa taaaagcgga gcagcctgcg gcggcacaag tagttacacc
     1621 acaagttgtt cagccgcaag tacagccaag aacacaaatt cagccgcaac aagcagaaca
     1681 acaagaacca actcgtaagg ggagatttta atcatgcgta gattattagt acctatactt
     1741 gctgtagttg cttttgttgt gctacaggca atcaccattg taaacgaggg cgagcgtggc
     1801 attatgttac gttttaacaa agttcatcgt gatagcgatc aaaaagtggt ggtatatgaa
     1861 ccggggattc actttaaagt accatttatc gatagtttaa aggtattaga tgctcgtatt
     1921 caaactctag atgggcaaga agaccgtttt gtaacagtcg agaaaaaaga tttattagtg
     1981 gactcctatg taaaatggcg aatcagtgat tttggccaat tttatacctc tactgggggg
     2041 gattaccaaa aagcggcgga tttattacgc cgtaaggtag gggatcgtct gcgttccgag
     2101 attggttctc gaaccattaa agatattgta tccggctctc gtggtgagtt aatggcagga
     2161 gcccaaaaag cgctgaatgc cggtgaagat ggagcagagc gtttaggaat tgaagtggtt
     2221 gatgtgcgag tgaagcaaat caacttacca aatgaagttt cttcttcaat ttaccaacgt
     2281 atgcgtgccg agcgtgatgc ggttgctcgt gaacaccgct cacaaggtaa tgagaaagca
     2341 gaggtaattc gtgccgaagt ggataaaaaa gtggtgctga ttttggcaaa tgcgaacaaa
     2401 actgcccaag ccttgcgagg tgaaggtgac gctcaagctg caaaactcta ttcagagaaa
     2461 tttggtaacg agccggaatt ttacagtttt attcgtagtt taaaagccta tgaagatagc
     2521 tttgccgaag gtcaaaataa tatgatgtta ttaaagccaa acagcgaatt cttacgcttt
     2581 atgcaagcac cgacaaaata attgtatcta taaaacccga tcttgtatcg ggtttttaat
     2641 tttcatccct attctgatca taacaagcgg taaattttgg ctgatttttt gcaaaaaatt
     2701 tgaaaaaatt gaccgcttgc gatatgaagt tataatgggt ttcgttattc atcctaacta
     2761 aaagaggcat ttctatgggt aaaagtgttg ctattcttgg cgctcagtgg ggcgatgagg
     2821 gaaaaggcaa aattgttgat ttattaacag atcgtgtgaa atatgtagta cgttatcaag
     2881 gtggacataa tgcagggcat accttaatca ttaatggtga aaaaaccgtt ctgcgtttaa
     2941 ttccatcggg tattttgcgt gataacgtga cttgtttaat cggtaatggt gtagtgcttt
     3001 ctccagaggc attaatgaaa gagatggggg agctagaaga acgaggcatt aatgtgcgtg
     3061 agcgtttaaa aatttctgaa gcttgcccgt taattctgcc ttatcacgtt gcgatggatc
     3121 acgctcgaga agcggcactt ggtaaaaaca aaattggtac aacaggacgt ggtattggcc
     3181 cagcttatga agataaagtc gctcgccgtg gtttacgtgt cagcgattta ttcgacaaag
     3241 aacattttgc cgcaaaatta aaagatattt tagattacta caacttccaa ttagtcaatt
     3301 attacaaagt tgaagcggta gattatcaaa aaaccttaga tgatgtgttt gcgattgcgg
     3361 atgtgattac cggaatggtt gccgatgtga caactttact tcacgaagca cgtgaaaacg
     3421 gcgacaatat tttatttgaa ggggctcaag gcacgatgtt agatatcgac cacggtactt
     3481 acccgttcgt aaccagctcg aatacgacag caggcggtgt ggcaaccgga tcaggctacg
     3541 gtcctcgtca tttagattat gtattaggga ttatcaaagc ctactgtacc cgtgtaggta
     3601 gtggaccgtt caccaccgaa ctatttgacg atgtaggtgc tgaaattgct cgcaaaggta
     3661 atgagttcgg agcggtaacc ggtcgccctc gccgttgtgg ctggtttgat gccgtagccg
     3721 ttcgccgagc agtgcaaatc aactccattt caggcttctg tatgactaaa ctcgatgttt
     3781 tagacggatt caaagagcta aaaatctgcg ttgcctacaa aatgccaaac ggaaaaattg
     3841 tcgaatatgc ccctcttgca gcaaaagact gggaaggtgt tgaaccaatt tatgaaacaa
     3901 tgccgggttg gtctgaaaat actttccgtg tgacaaaacg tgaagattta ccacaagccg
     3961 cattagatta cattaaacgt atcgaagagc tggtcggtgt gccggtagat attctttcta
     4021 caggtccgga tcgtgtcgaa acgatgattt tgcgtgatcc ttttgcagct taataaaaga
     4081 taaaataaag ccatttagtg agatagagct agatggcttt tttgtttgaa ccagtaaact
     4141 ttactttggc acaattttgt cacaatacag aaaatagttc tttagcgtga gtttttgagg
     4201 ctgtgtaagt atttgaattt aaaagaattt aatggcacgc cctaaaggat tcgaaccttt
     4261 gacccacgcc ttagaagggc gataggtatt ttataaaagg cgtttatttt aactaataaa
     4321 aacaaagact tatagagata acccctctat attacctacc attatttcac atctttttac
     4381 attaaataac accatttacg gtacatttat ggaacacgtt ggtgatgagc tagtcttcaa
     4441 aagttactaa attaaactac aatctgcccc gtctctttta agtacttata gatacgccct
     4501 aacataatct gcgttggcgt tttgccaata tcctcttttg ttagcggtgc atcagtaatc
     4561 tccttggcgg actgtgcatc aatgtatttg tactcacttg tgatgattac aaagtttgtt
     4621 acttctccat cggtatcatc gcctgtaccg accacatatt
//
LOCUS       DANLVT010000152         4525 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.152, whole genome shotgun sequence.
ACCESSION   DANLVT010000152 DANLVT010000000
VERSION     DANLVT010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4525)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4525)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4525
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.152"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(127..1266)
                     /gene="dnaJ"
                     /locus_tag="PXC99_002318"
     CDS             complement(127..1266)
                     /gene="dnaJ"
                     /locus_tag="PXC99_002318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HDL5418724.1"
                     /translation="MAKKDYYEVLGLSKGASEKDIKRAYKRLAAKHHPDKNQGSKESE
                     EKFKEITEAYDVLTDSEKKAMYDQYGHAAFEQGGAGAGGFGGFGGGGFGGFEDIFSEM
                     FGGGFGGGGRRQRVVRGDDLRYDIEITLEEAVKGCKKDIRIQTLAECDTCHGTGAEAG
                     SKVETCSHCHGSGRVRRQQGFFVTEAVCPSCHGTGKRIEKPCRSCHGDGRVQKAKNLS
                     VTIPAGVDTGNQLRLSREGAAGENGAPAGDLYVVIHVKEHDIFERDGSNLYCEVPISF
                     TLAALGGEIEVPTLDGKLKLKIPAETQTGKLFRVRGKGVTSPRGGYAGDLICKVVVET
                     PVNLTEEQKALLRQFEESLEGQGKHRPKHEGFFDGVKKFFDNLGK"
     gene            complement(1489..1791)
                     /locus_tag="PXC99_002319"
     CDS             complement(1489..1791)
                     /locus_tag="PXC99_002319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418725.1"
                     /translation="MLKLYPTTENVQPPFYKIYDHKSGETVIATETENSNTAILMDDF
                     VWFEQIPTTEALLADTWSVIENRSKQGLLKRAYTKDFEKHLADGKVEIYIAVNPHC"
     gene            complement(1933..3831)
                     /gene="dnaK"
                     /locus_tag="PXC99_002320"
     CDS             complement(1933..3831)
                     /gene="dnaK"
                     /locus_tag="PXC99_002320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005670448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HDL5418726.1"
                     /translation="MGKIIGIDLGTTNSCVAVMDGDKPRVIENAEGARTTPSIIAYTD
                     KETLVGQPAKRQAITNPKNTLFAIKRLIGRRFTDAEVQRDIEIMPFEISKADNGDAWV
                     TVKGDKLAPPQISAEILKKMKKTAEDFLGEPVTEAVITVPAYFNDAQRQATKDAGRIA
                     GLDVKRIINEPTAAALAYGLDSKKENQTIAVYDLGGGTFDISIIEIDNFDGEQTFEVR
                     ATNGDTHLGGEDFDNRVINYLVEEFQKEQGVDLRNDPMAMQRVKEAAEKAKIELSSAQ
                     ETEVNLPYITADATGPKHLNIKVTRAKLESLVEDLVNRSLEPLKTALADAGLSVGDIN
                     DVILVGGQTRMPLVQKKVADFFGKEPRKDVNPDEAVAIGAAVQGGVLSGSVTDVLLLD
                     VTPLSLGIETMGGVMTTLIEKNTTIPTKKSQVFSTAEDNQSAVTIHVLQGERKRAADN
                     KSLGQFNLEGINPAPRGMPQIEVTFDIDANGIINVSAKDKNTGKEQQIKIQASSGLSD
                     AEVEQMVRDAEANAEADKKFEELVQARNQADGIAHATRKQITEAGDALNADDKAKIEA
                     AISELETAAKGEDKAEIEAKIEALIKASEPLMQAAQAKAQGGEQPQQSQKDDGVVDAE
                     FEEVKDNK"
     gene            4090..4428
                     /locus_tag="PXC99_002321"
     CDS             4090..4428
                     /locus_tag="PXC99_002321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5418727.1"
                     /translation="MKLITTIIQPSKLDQVQDALSEIGIQGMTITEVKGFGRQYGHTE
                     QELSQMSRIDFRPKIKVEILVSNYQTDEVIDAILNASYSGQVGDGKIYVANIEQVIRT
                     RTGETDDEAV"
BASE COUNT         1158 a         1035 c          900 g         1432 t
ORIGIN      
        1 aagcggtcat ttttccacta ttttttgcag tatgtaggtg taaaaattaa cggccgagaa
       61 gtagatttca acaaagaata gataataaaa aagtacatat ttaagaaata tgtacttttt
      121 atgattttat ttgcctaagt tatcaaagaa tttcttcaca ccatcaaaga aaccttcgtg
      181 tttcggacga tgtttacctt gtccttctaa actctcttca aattgtcgta atagtgcttt
      241 ctgttcttcg gttaaattca caggcgtttc gaccaccact ttgcagatta aatcccctgc
      301 gtagccacca cgagggcttg ttaccccttt gcctcgtaca cggaatagtt taccggtttg
      361 agtttctgcc ggaattttga gttttaattt gccgtctaaa gttggcactt caatttcacc
      421 gcctaaagct gcaagggtaa agctaatcgg cacttcacag tataaattcg aaccgtcacg
      481 ctcaaaaata tcgtgttctt taacgtgaat caccacatat aaatcgcctg ccggtgcgcc
      541 attttcgcct gcagctccct ctctcgataa gcgaagttga ttaccggtat ccacacctgc
      601 cggaatggta acagagaggt ttttcgcttt ctgtacacgt ccatcgccgt ggcaagaacg
      661 gcacggtttt tcaatgcgtt tacctgtacc gtgacaactt ggacaaactg cctcagtcac
      721 aaagaaacct tgctgacggc gaactctgcc ggagccgtga caatgcgaac aggtttccac
      781 tttgctccct gcttccgccc ctgtaccatg acaagtatca cattcagcta aggtttgaat
      841 gcgaatatct tttttacagc ctttcacagc ttcttcaagg gtgatctcga tgtcgtaacg
      901 taaatcatcg ccacgtacca cacgttggcg acgtccaccg ccaccaaagc caccgccaaa
      961 catttcgctg aagatgtctt caaaaccacc gaaaccaccg ccgccaaagc caccgaatcc
     1021 gcctgcaccg gcaccgcctt gttcaaaggc ggcgtgaccg tattggtcgt acatcgcttt
     1081 tttctcgctg tcggtcagca cgtcataggc ttcggtaatc tctttaaatt tctcttccga
     1141 ctctttactg ccttggtttt tatccgggtg atgctttgcc gccaaacgtt tatatgctcg
     1201 tttgatgtct ttctcgcttg cccctttaga cagtccaagg acttcgtaat aatctttctt
     1261 tgccattgtt gttccgtttg taaatttttc tgtgtttttg accgcttgcc ctcgcccctt
     1321 gtgggagagg ggtaggatgg ttaattcccc ctctctctga aaaatatttc tgaacgaaat
     1381 atttttcggt ctctctccca caaggggaga gagttttata taattaaatg ggatctagcc
     1441 aagatggctc aagatgacac aagcgtggac gcttgcgcta tcaaaagcct aacaatgcgg
     1501 attcaccgca atataaattt ctactttgcc gtctgctaaa tgtttttcaa aatctttggt
     1561 gtaagctcgt ttgagcaaac cttgtttgga acggttttca atcacagacc aagtgtctgc
     1621 caaaagagct tcggtagttg gaatttgctc aaaccaaaca aaatcgtcca ttaaaatcgc
     1681 ggtattgctg ttttccgttt ctgtggcaat gaccgtttcg ccacttttat gatcgtatat
     1741 tttataaaac ggtggctgta cattttccgt tgtagggtag agttttagca tttgtaaaat
     1801 ttcctttgaa aagcaccgct tgcacagccc caaaggggct gaattatgtg taacctagca
     1861 cggctcgtgc taggtggtat atatctacac aaaaggggcg aaagatattt cgcccctaca
     1921 agttacgcaa gattatttat tatctttcac ttcttcaaat tccgcatcga ccacgccgtc
     1981 atctttttga gattgttgtg gttgctcgcc gccttgtgct tttgcttgtg ctgcttgcat
     2041 taacggttct gaagctttga ttaacgcttc gattttcgct tcgatctcgg ctttatcttc
     2101 gcctttagct gcggtttcta actcagaaat agccgcttcg atcttcgctt tatcgtctgc
     2161 gtttaacgca tcgcctgctt cggtaatttg cttacgggtt gcgtgagcaa taccgtctgc
     2221 ttggttacga gcttgaacta actcttcaaa ttttttgtct gcttccgcat tcgcttctgc
     2281 atcacgcacc atttgttcaa cttcagcatc gcttaagcct gaagatgctt gaattttgat
     2341 ttgttgctct ttgccagtgt ttttatcttt tgcagagaca ttgataatac cgttagcatc
     2401 aatatcaaag gttacttcaa tttgtggcat accgcgtgga gcagggttaa taccttcaag
     2461 gttgaattga cctaaagatt tattatccgc tgcacgttta cgctcacctt gtaacacgtg
     2521 gatagttacc gcagattggt tatcttccgc tgttgagaac acttgtgatt tcttggttgg
     2581 aatcgtagtg tttttctcaa ttaaggtagt cattacacca cccattgttt cgataccaag
     2641 tgaaagcgga gtaacgtcta ataacaatac gtctgttacc gaaccactta acacaccgcc
     2701 ttgaaccgcc gcaccgattg ccacagcttc gtccgggtta acgtctttac gcggttcttt
     2761 gccaaagaag tctgccactt ttttctgtac taacggcata cgggtttgac caccgactaa
     2821 aatcacatcg ttgatgtcgc ctactgataa accggcatca gctaaagcgg tttttaacgg
     2881 ctctaacgaa cggtttacta aatcttcaac taaagattcc aatttcgcac gggttacttt
     2941 aatgtttaag tgtttcgggc cggttgcatc tgccgtgatg tatggaaggt tcacttcagt
     3001 ttcttgtgca gaagaaagtt cgattttcgc tttttccgct gcttctttca cacgttgcat
     3061 tgccattggg tcgttgcgta aatcaacgcc ttgttctttt tggaattctt ccactaagta
     3121 gttgattaca cggttatcga agtcttcacc acctaggtga gtatcgccgt tggttgcacg
     3181 cacttcaaaa gtttgctcgc cgtcaaagtt atcaatttcg ataatcgaaa tatcgaatgt
     3241 accaccacct aagtcgtaaa cagcaatcgt ttggttctct ttcttagaat ctaaaccata
     3301 agcaagcgct gccgctgttg gttcgttgat gatacgtttt acatctaaac ctgcaatacg
     3361 accggcatct ttagttgcct gacgttgtgc atcgttaaag tatgcaggca cagtaataac
     3421 cgcttcggtt accggttcgc ccaagaaatc ttctgcggtt ttcttcattt ttttcaagat
     3481 ttcagcagag atttgcggcg gtgctaattt atcgcctttt acggttaccc acgcatcgcc
     3541 gttatctgct ttgctgattt caaacggcat aatttcaata tcacgttgca cttcagcatc
     3601 agtaaaacga cggccgatta aacgcttgat tgcaaataaa gtatttttcg ggttagtaat
     3661 tgcctgacgt tttgccggct gaccaactaa ggtttcttta tcggtgtaag cgatgataga
     3721 tggcgttgtt cttgcccctt ccgcattttc aattacacga ggtttgtcgc cgtccattac
     3781 cgcaacacaa gaatttgttg tacctaagtc aataccaatg attttaccca tttttatgat
     3841 tcctataata ataaattcag tttgaataag aaacgggatt gcatttcccg ttcagacgaa
     3901 atcataaata gggacgaaaa tgcactgttc aagggcaaaa ataaaaaaat tgcaaaattt
     3961 ttggaaaaag taaccgcttg tatgtggggg agatttggca gaatatttca cggagaaaat
     4021 acctcctacc ttgcataccc ctcaatagct ttttatactt acggcaactc aaacagagaa
     4081 ggatataata tgaaactgat tactaccatt atccaacctt caaaattaga ccaagtgcaa
     4141 gatgcacttt cagaaatcgg tattcaagga atgactatta ccgaagtaaa aggctttgga
     4201 cgccaatatg ggcataccga acaagagctt agccaaatga gccgcattga ctttcgtcct
     4261 aaaattaagg tggagatatt ggtttctaat taccaaaccg atgaagtgat cgatgccatt
     4321 ctcaatgcat cctattctgg gcaagtgggt gatggcaaaa tttatgtagc gaatattgaa
     4381 caagttatcc gcacccgtac cggcgaaact gacgatgaag cagtctagcc attgctagca
     4441 gagaagcttt ttattatcgt gttttagagt tatattttca accttactaa agcaaatttt
     4501 ctaatttggt gtgaattaaa tgttt
//
LOCUS       DANLVT010000153         4499 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.153, whole genome shotgun sequence.
ACCESSION   DANLVT010000153 DANLVT010000000
VERSION     DANLVT010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4499)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4499)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4499
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.153"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            81..671
                     /locus_tag="PXC99_002322"
     CDS             81..671
                     /locus_tag="PXC99_002322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418728.1"
                     /translation="MTTQITTAQINDLLKSHDIQGYANEWQGRRIYINLSAKNNESKG
                     DRNYQLYIDLATGELVSKLGKGLTTRAFDAAVKAFENAFNAKDTAENTAPVESKETEQ
                     ENKQETTKLVITKPTLKGSEKQIDSANEIINLFIAKIGDTSIPVTATQEQITQAQAMV
                     DNFFAMTNAGKWIEKFKGLNDNSEPKQFWLSVKYGW"
     gene            741..1259
                     /locus_tag="PXC99_002323"
     CDS             741..1259
                     /locus_tag="PXC99_002323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418729.1"
                     /translation="MTTQVTPQIMRIIGQIVAATYGDDVPTNVQTIILRYPIRGIGFI
                     SSRRELSINNGEIARLMDKIPGDLEDPKDGMPFDCQGAFWLGYYQYCKLSNDVKNYTS
                     KELSIIGESLYGTQWQSNLARDLRLSDARRVREWVAGERKIPFGVWADLTELVKAKKA
                     NLSSILKKLTID"
     gene            complement(1406..1717)
                     /locus_tag="PXC99_002324"
     CDS             complement(1406..1717)
                     /locus_tag="PXC99_002324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418730.1"
                     /translation="MTKTKHKHPLAEAFYQLGKDVGEINRRLVVVDEQSLKLQELKQT
                     INEQTEQIKTLGTVVNKLIDALQQSQSLNVRSESAVAATENQDHLNDGVQYQGPGRAR
                     A"
     gene            complement(1710..1859)
                     /locus_tag="PXC99_002325"
     CDS             complement(1710..1859)
                     /locus_tag="PXC99_002325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418731.1"
                     /translation="MDNILITIHPTETIDITIDKLVVIHIGEEYGDTPDFLTIYQQAK
                     ELNDD"
     gene            complement(2093..2386)
                     /locus_tag="PXC99_002326"
     CDS             complement(2093..2386)
                     /locus_tag="PXC99_002326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418732.1"
                     /translation="MTTFNKILNPMYSTIASYSTQDDGSLNAKYVVGTGDDTDGEVTN
                     FVIITSEYKYIDAQSAKAITDAPLTKEDIGKTPTQIMLGRIYNHLKETGQIVV"
     gene            complement(2509..>4499)
                     /locus_tag="PXC99_002327"
     CDS             complement(2509..>4499)
                     /locus_tag="PXC99_002327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1983 domain-containing protein"
                     /protein_id="HDL5418733.1"
                     /translation="FTAEWTSERAYLLVGVNGTYETTDWLAFHSVKLEKGNVATDWTP
                     APEDVDSAVSAVSAKIDTIQETLANADSALSSRIDAVTASVGSNLAKITQVSNAVAGV
                     DGKLSATHTIKTETIAGGRKAIAGIALGAAADNRNAESSVIVMADKFEVVKNAQDGQP
                     VRLFGVAQNKVAINGNLIATGTIKGSHIDADSVRAGILTAGAIRTEHLAAGQISADKL
                     AIGLGGNLLVNPIFATPDLSIAPFGWNYWRGEVGDRLNIDTRNIFNRNEQDNYGLKNG
                     GLPNELVFSMRYSTTKETSDTGRIGWLSQDINVVPNKKYIASVWLACHRGQAKLVIEN
                     IEKPGGAYLGWIGDSEVITGYSANQGEFKNMKRVKVVFTAPTSGCIRFALRLDNIQGK
                     ANPFLFARRPMLEEASDNVTDITQPSPWQNAGVTAIHGGSIVTNTVTAQQIAANTITA
                     NEIATGTIAARNMAANSINASHIVGSSITADKLNVNNLAAISANLGKVTAGTITGTTI
                     TGNTISGGSINGTTISGTTISGGTIKGARLEGATGKFTGELEVSQLIGGGVIEQVTGK
                     LKYSHRNRIYEGQEHGENSSSPIYRHEYIYKATVTINAAPTRRYIEIIGSESFILEAN
                     QSITKTIEKSLNRNASGSSLDFIVLAYSISTAKYISIS"
BASE COUNT         1320 a          949 c          878 g         1352 t
ORIGIN      
        1 aaattattat gcgcctataa ttaggctcat aaagcaaggc tagggagcca gctaataacc
       61 atcagccaaa gggggctaaa atgacaactc aaattacaac cgcacaaatc aacgacttat
      121 taaaatctca cgatatccaa ggctacgcca acgaatggca aggtcgccgc atttacatta
      181 acctttcagc aaaaaataac gaaagcaaag gtgatcggaa ttaccagttg tacattgacc
      241 tagccacagg cgagttagtg agcaaacttg gcaaaggatt aacaaccaga gcgtttgatg
      301 ctgccgtaaa agcttttgaa aacgctttta atgctaaaga caccgctgaa aatacagcgc
      361 cggtagaaag caaagaaaca gagcaagaga acaaacaaga aacaactaag cttgtaatca
      421 caaaaccaac attaaaaggc tctgaaaaac aaattgattc ggcaaacgaa atcatcaatc
      481 tttttattgc gaagattggt gatacctcta tcccagtaac agcaacgcaa gaacaaatta
      541 ctcaagctca agcaatggta gataattttt ttgcaatgac aaacgctgga aagtggatcg
      601 aaaaatttaa aggtctaaat gataatagcg aaccaaagca attttggtta tccgtaaaat
      661 atggatggta gattgagata acaaataagc cgtaagagca aaggcttacg gctaaaacaa
      721 acagataact ggagattatt atgactacac aagtaacacc acaaattatg cgcattatcg
      781 ggcaaattgt cgctgctact tatggtgacg atgtgccaac aaacgtacag acaataatct
      841 tgagataccc tataagaggc atagggttta tctctagtcg cagagagcta tctattaaca
      901 atggagagat agcaagatta atggataaaa taccaggcga cctcgaggac cctaaagacg
      961 ggatgccttt tgattgtcag ggggcgtttt ggcttggata ctatcaatac tgcaaattaa
     1021 gtaacgatgt aaaaaattac acatcaaaag agctatccat cattggcgag tcattgtatg
     1081 gcactcaatg gcagtctaat ctagcgagag atttgagatt atctgatgct cgccgtgtcc
     1141 gcgaatgggt ggctggtgaa cgtaaaatcc ctttcggggt ttgggctgat ttgaccgaat
     1201 tggttaaagc caaaaaagct aacttatcat caattcttaa aaaattaaca atagattagc
     1261 actgatttta aagcccctct cggggcttaa ttatagaaaa taaaatcaca atggctaatt
     1321 ttgccaaatt tgcctgttaa aacgtgcgaa aaattacaaa aaacggctag agctatagcc
     1381 gttttgagtg cagatgttaa cagagttaag ctctagcacg tcctgggcct tgatactgca
     1441 caccatcatt taaatgatct tgattttcgg ttgctgctac agcagattct gatcttacat
     1501 ttaaactttg tgactgttgt aatgcatcaa taagtttatt taccactgtt ccgagtgttt
     1561 taatttgctc ggtttgctca ttaatagtct gctttaactc ttgcagtttt aatgattgct
     1621 catccacaac cactaatcga cggttaatct ctcctacgtc tttacctaat tgataaaatg
     1681 cttctgcaag tgggtgtttg tgtttagttt tagtcatcgt taagctcctt tgcttgttgg
     1741 tatatagtta aaaagtcagg tgtgtcacca tactcctcac ctatatggat aactaccagt
     1801 ttgtctatgg tgatatcaat agtttcggtt ggatgtatag tgattaagat attgtccata
     1861 ttcccgcctt aaatttgggt ttggtcaggg ataagttgga tcgtgccgta gtactgccat
     1921 tttgggtgga tagctcaatt tgaggctctg tgctgccctc tactatggcg tgtaaatcca
     1981 gcctaatacc ctctaaattt acaggctcgc catttgtttg cctaaaaaaa aaggcgataa
     2041 cttacgtcat cgcctctgaa aaacttaaat ttatgctttt gcatttagac ccctacacta
     2101 caatctgacc ggtttctttg aggtggttgt agatacgtcc taacataatc tgcgttggcg
     2161 ttttgccaat atcctctttt gttagcggtg catcagtaat cgccttggcg gactgtgcat
     2221 caatgtattt gtactcactt gtgatgatta caaagtttgt tacttctcca tcggtatcat
     2281 cgcctgtacc gaccacatat ttagcattga gcgagccgtc atcttgcgtt gagtagcttg
     2341 cgatggtgga atacattggg tttaagattt tgttaaaagt tgtcataatt tttcctttta
     2401 tcgatagttg aaataaaaac aatcgcctga attgacctgc aagcggttgg ttttggatat
     2461 ttaaaaaagc tgtggctatc cgcactcagt actacattga ggcgataact aactgataga
     2521 gatatattta gccgtcgaaa tggaataggc taaaacaata aaatctaaag agctaccact
     2581 tgcatttcta tttaatgatt tctctattgt ttttgtgatt gattgatttg cttctaaaat
     2641 gaatgactca cttccgatga tttcaatata cctccttgtc ggcgctgcat ttatggtgac
     2701 agttgcttta tagatatatt cgtgtctata aattggagag gaggagtttt ctccatgttc
     2761 ttgcccctca taaatgcgat tacgatgtga atattttaat ttgcctgtaa cctgctctat
     2821 aacacctccc cctattaatt gagatacttc aagttcgccg gtaaatttgc cagtagcccc
     2881 ctccaatctt gcacccttta ttgtgccgcc agagatagtt gtaccgctaa ttgttgtacc
     2941 attaatactt ccgccactaa ttgtattacc agtaattgtc gtacctgtaa ttgtaccagc
     3001 agttacctta ccaagatttg ccgatattgc cgctaaattg tttacattta gcttatccgc
     3061 agtgatcgaa ctccccacaa tatgacttgc attaatcgag tttgctgcca tatttcgagc
     3121 tgcaatcgtg ccggttgcga tttcgttggc ggtaatggta tttgctgcaa tttgttgagc
     3181 agtaacggta ttagtaacta ttgatccacc gtggatagcg gttacaccgg cattttgcca
     3241 agggctaggc tgagtgatat ctgtaacatt atcactagcc tcctcaagca ttggcctacg
     3301 agcaaataaa aatggattag ctttaccttg aatattatct aatcgtaatg cgaaacgaat
     3361 acagcctgaa gtaggtgcag taaatacaac cttaacccgt ttcatatttt taaattcgcc
     3421 ttgattagca ctatagccag taattacctc gctgtcgcct atccaaccta agtaagcacc
     3481 accaggtttt tcgatattct caatgactaa tttagcttgc ccacgatgac aagctaacca
     3541 tacggaggca atatattttt tattaggcac aacattaata tcctgagata accacccaat
     3601 tcgcccagta tcagaggttt cctttgtagt gctataccgc atcgaaaata ctaactcatt
     3661 tggtagtcct ccatttttta gtccgtaatt atcttgttca ttcctattga aaatattacg
     3721 ggtgtcaata tttagccgat caccaacttc tcctcgccag tagttccagc caaacggagc
     3781 tattgacaaa tcgggtgttg caaaaatagg attaaccagc aaattcccac ctagcccaat
     3841 cgctaactta tccgccgata tttgccctgc tgccaggtgt tccgtacgga tagctcccgc
     3901 cgtcaatatt ccggctctta ctgagtctgc atcaatgtgg ctacctttaa ttgtacctgt
     3961 tgcaattaaa ttcccattaa tcgcaacttt attttgagcc acaccaaaca atcgtaccgg
     4021 ttggccgtct tgagcatttt ttactacctc aaatttgtct gccattacaa tgacagagga
     4081 ttctgcattg cgattgtctg ccgcggcacc aagtgcgata ccggcaatcg ctttacgtcc
     4141 accggcaatg gtttcggttt tgatggtatg ggtagcagat aatttgccgt ccacaccggc
     4201 tacagcatta ctcacttgag taatttttgc caagtttgag ccaacagaag cagtaacggc
     4261 atcaatacga gagcttaatg cagagtcggc attcgctaaa gtctcctgaa tagtatcaat
     4321 tttagccgaa acagcactaa ccgcactgtc cacatcttca ggtgctggcg tccagtctgt
     4381 ggctacgttg cctttttcaa gtttgacgct gtgaaacgct aaccaatctg tggtctcata
     4441 agtaccattt acaccaacaa gcagataggc tcgctcactt gtccattcgg cagtaaagg
//
LOCUS       DANLVT010000154         4484 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.154, whole genome shotgun sequence.
ACCESSION   DANLVT010000154 DANLVT010000000
VERSION     DANLVT010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4484)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4484)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4484
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.154"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            20..2110
                     /locus_tag="PXC99_002328"
     CDS             20..2110
                     /locus_tag="PXC99_002328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HDL5418734.1"
                     /translation="MLSYLVFFSKIIKIPNLKGFLPHCEIRRRPLVGKTFIAQKRPNQ
                     IIGWGLRPSAVGSRAYAQKHQLPYIALEDGFLRSLGLGVKGYPPFSLVYDDIGIYYDT
                     TCPSRLEKLLLEKPLQDQEQIKLAERALSQILTYGLSKYNHALDFSEIPSAKEKIVLV
                     IDQTFGDMAVKYGQASEVDFNKMLETAISENPEAQIWVKTHPDVLSGKKKGYLTDLPQ
                     YTDRVRIITEDVNPASLIKLCEKVYCVTSQMGFEALLLGKKVVTFGVPWFAGWGVTDD
                     RNEAVQLLVQQNRRKDRSLLQLFYAAYFDYSRYINPNTGEKGSIFDVIDYLYKAKRLN
                     QRLSGNLYCIGMSLWKQAVIKPFFNLPQCRLHFVRSLNSLKKRPLADNAKILVWSNGK
                     ADVLQFAQQNNIPLLRMEDGFIRSVGLGANLVAPLSLVVDDLGIYFNAENTSRLEQIL
                     LSAEHFSETDLSYAETLRQKLVASHIGKYNVGGGDVKFNAQGKKIILVPGQVEDDASI
                     KSGSPQIKRNLDLLKKVRELNPSAYIIYKPHPDVVSGNRVGQIPTAETRRFADQMVDN
                     ANILDCILIADEVHTMTSLAGFEALLRGKKVHCYGLPFYAGWGLTEDRLKSARRGKSL
                     TLSQLIAATLIYYPLYVDPISRQFIDANQAIHILSQQKRNLTNQRIKRSWVSKQYGKL
                     QHLYRAFKYASHTK"
     gene            2133..3365
                     /locus_tag="PXC99_002329"
     CDS             2133..3365
                     /locus_tag="PXC99_002329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDL5418735.1"
                     /translation="MEHYLDELIINSQRILLLQGPIGSFFTEFARWLESEQKEVFKLN
                     FNGGDEYFYPNNSPNTFPYYDSLDNFEAYLIQFCQTHQIDNILCFGDNRYYHKVAKNV
                     CLKLKLVFWAFEEGYFRPEYITLEKWGVNAFSPIPKNHTFFLPYAELPVVSEPEKVSK
                     GFRCMAGKAIPYYWNAYKKRKAYAKYQHHRFLNLKYYLNLWTRSGIKRICYWLHDKGF
                     AKRVEKGEFGEFFIVPLQVYDDTQVRIHSEQKSVERFLREVLNSFAKFAPAHLNLIIK
                     HHPMDRGFIDYKMVIYEFLEQYPQLNGRVFYIHDVPLPVFLRYGKGMVTLNSTSGLSA
                     LLHNMPVKTLGRANYDFEGLTDKQPLDTFWANPQPPNSEVFKGYRQFHLHKTHINGNF
                     YHKSILRYPYNWENEAHR"
     gene            3446..>4484
                     /locus_tag="PXC99_002330"
     CDS             3446..>4484
                     /locus_tag="PXC99_002330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5418736.1"
                     /translation="MAIYAIWNNKGGVGKSYLTFQIACEYAKQYPAKKVLVVDLCPQA
                     NSSSMLLGGIEKGEQELAKIHSQVNKNTISGYISERLVSPYRSINSATKYVTQVSTIN
                     EYVPKNVYLVVGDEELEIQSSGILHASQAVHVPDSWRLVHLWVRDLVSDIQNAWDNDD
                     NVVFIDCNPSFTIYTELALAASDRLIIPFSADGSSKRAVKSVLSLVYGVKRHSGDVSS
                     HFYTESQKSKLALPQIYMYVGNRLTINAKASATAFKTVVEEIGDEIYNIWKTNANLFC
                     IHPAGVGTPTNKSSFRKMFQYEVRDANTASVVSGALGIPISRLSSGKRDVLGKNVMVN
                     QSQLDAQVPNIQ"
BASE COUNT         1445 a          704 c          907 g         1428 t
ORIGIN      
        1 aatatgagat taatttttta tgcttagcta tttagtgttt tttagtaaaa ttataaaaat
       61 ccctaattta aaaggttttt tacctcattg tgaaattagg cgaagacctc ttgtgggaaa
      121 aacctttatt gctcaaaaaa gaccgaacca aatcatcggc tgggggcttc gtccttcagc
      181 ggtgggatca agagcttatg cacaaaaaca tcaacttccc tatattgcat tagaagacgg
      241 ctttttacgc tcactagggc tgggtgtaaa aggctatccg ccattttctt tagtttatga
      301 tgatataggt atttattacg ataccacctg tccttctcgt ttagaaaagt tattgcttga
      361 aaaaccttta caggatcaag agcaaatcaa gcttgcagag agagcattat ctcaaatctt
      421 aacttacgga ctttctaaat ataatcacgc actagatttt agtgaaatcc cctctgccaa
      481 agaaaaaatc gtgttagtta ttgaccaaac ctttggtgat atggcggtga aatatggtca
      541 agcgagtgaa gtggatttca ataaaatgtt ggaaacggca atcagtgaga atccagaggc
      601 tcaaatttgg gtaaaaactc accccgatgt attaagtggc aagaagaaag gctatttgac
      661 cgatttacct caatatactg atagggtcag aattattact gaagatgtga atccggcaag
      721 tttgattaaa ttgtgtgaga aagtctattg cgtaacttcg caaatggggt ttgaggcatt
      781 attattaggt aaaaaagtgg ttacctttgg tgtaccgtgg tttgccggtt ggggggtaac
      841 agatgatcgt aacgaagcgg ttcaactatt agttcaacaa aatagacgga aagatcgttc
      901 attactgcaa cttttttatg ctgcgtattt tgattacagc cgttatatta atccgaatac
      961 cggtgagaaa ggctctattt ttgatgtcat cgattatcta tataaagcca aaagattaaa
     1021 tcagcgctta agtgggaatc tatactgtat tggtatgtcg ctatggaaac aggcggtaat
     1081 taagccgttt tttaatttgc cacaatgtcg attacatttt gttcgttcgc taaattcttt
     1141 aaaaaaacga ccgcttgcag ataatgcaaa aattttagtt tggagcaatg gcaaagcgga
     1201 tgtcttgcaa tttgcacagc agaataatat tccattgtta agaatggaag atggattcat
     1261 tcgctctgtc ggactaggcg ctaatttagt tgcaccgctt tctttagtag tcgatgattt
     1321 aggcatttat tttaatgcag agaacacttc acgattagaa caaattttat tgagtgcaga
     1381 gcatttttct gaaactgatt tgtcttatgc tgaaacatta aggcagaaat tggtggctag
     1441 ccatattgga aaatataatg tgggcggtgg cgatgtaaaa tttaatgctc aaggtaaaaa
     1501 aataattctt gtaccggggc aggtagaaga tgacgcttcg atcaaatcag gttctccaca
     1561 aattaaaaga aatctggatt tactgaaaaa agtgagggaa ttaaacccta gtgcctatat
     1621 tatttataag cctcaccctg atgtggtaag tggtaatcga gtcggtcaga ttcctacggc
     1681 agaaacacgc aggtttgcgg atcagatggt ggataatgcc aatattttag attgtatttt
     1741 aattgcagat gaagtgcata caatgacatc tttagccggt ttcgaagcat tattaagagg
     1801 taaaaaagtg cattgctacg gattaccttt ttatgctggt tggggattga cggaagatag
     1861 attgaagtcg gcacgcagag gtaaatcttt gacattatct cagttaattg ccgcaacatt
     1921 gatatattac cctctgtatg ttgatcctat aagcaggcag tttattgatg ccaatcaagc
     1981 gattcatata ttgtcacaac agaaacgaaa cctaaccaat caaaggatta aacgttcttg
     2041 ggtgagtaaa caatatggaa aattacagca tctttatcgt gcgtttaaat atgcttccca
     2101 cactaaataa gcgtagaggg taggaaatta agatggaaca ttatttagat gagctaatca
     2161 tcaatagcca gagaatttta ttgttacaag gcccgatagg ctcttttttc actgagtttg
     2221 cccgttggtt agaaagtgag caaaaagagg tcttcaagtt aaattttaat ggcggagatg
     2281 aatatttcta tccaaataat agcccgaata cttttcctta ctatgatagc ttagataatt
     2341 ttgaagccta tttaattcag ttttgccaaa ctcatcaaat agataatatc ttatgttttg
     2401 gcgataatcg ttattatcat aaagtggcta aaaacgtttg cttgaagtta aagttggtct
     2461 tttgggcgtt tgaagaaggg tactttaggc cagaatatat tacgttggaa aaatggggtg
     2521 taaatgcttt ttctccaatc cctaaaaatc acactttctt tttgccttat gccgagttac
     2581 cagtagtcag tgaaccagaa aaagtatcta aaggctttag atgtatggcg ggaaaagcaa
     2641 tcccgtacta ttggaatgcc tataaaaaac gtaaagcata cgcaaaatat cagcatcatc
     2701 gttttctgaa tctcaaatac taccttaatt tatggacaag gtcgggaatt aagcgaatat
     2761 gttattggtt acatgataaa ggctttgcca agcgggtaga aaaaggagag tttggtgaat
     2821 ttttcattgt gcctctacaa gtttatgatg acactcaagt gaggattcat agtgaacaaa
     2881 aaagtgtaga gcgtttttta agggaagttc tgaattcctt tgccaaattt gcaccggcac
     2941 atctcaattt aattattaag catcacccga tggatagagg atttatagat tataaaatgg
     3001 tgatttatga attcttagag caatatcccc aattaaacgg tagagttttt tatattcacg
     3061 atgtgccgtt acctgtcttt ttacgttatg ggaaaggaat ggtgacttta aattcaacca
     3121 gtgggctttc tgcattgctc cataatatgc cggtcaaaac cttaggtaga gccaattatg
     3181 attttgaggg attaaccgat aaacagccat tagatacttt ttgggctaat cctcagccac
     3241 ctaattcgga agtatttaaa ggctacagac aatttcattt acataaaacg catattaacg
     3301 gtaattttta ccataaatcg attttgcgtt atccttataa ttgggaaaat gaagcacaca
     3361 ggtgatggaa aatattaaaa taagtaatat cttatagcta aattattgtg ttattattac
     3421 acctattgtt aaaagagggg gcattatggc tatttatgca atatggaata ataaaggtgg
     3481 ggttggtaaa agttatttaa cttttcaaat cgcttgtgag tatgcaaaac aatacccagc
     3541 aaaaaaagtt ctcgttgttg atttatgtcc tcaagcaaat tcatcatcta tgctattagg
     3601 cggcattgaa aaaggtgagc aagagttagc aaaaattcat tctcaagtaa acaagaatac
     3661 tatttcagga tatatttcag aaagattagt aagtccttac cgttctatta atagtgcaac
     3721 gaaatatgta actcaagtta gcactataaa tgaatatgta ccaaaaaatg tttatcttgt
     3781 tgttggtgat gaggaattag aaatccaatc atctggtatt ttacatgctt cccaagctgt
     3841 tcatgttcct gattcttggc ggctagtgca tctttgggtg cgtgatttag tttctgatat
     3901 acagaacgct tgggataatg atgataacgt tgtatttatt gattgcaatc caagtttcac
     3961 tatttatact gaattagcgt tggctgcttc agatagattg atcatccctt tttccgctga
     4021 tggttcatca aaacgagctg ttaagtctgt attatctcta gtatatgggg ttaaaaggca
     4081 ctctggggat gtcagctctc atttttatac agaatctcaa aagagtaagt tagcattacc
     4141 tcaaatttat atgtatgtag gtaatagatt aacgataaat gccaaagcat cagcaaccgc
     4201 atttaaaaca gttgtagagg aaataggtga tgaaatctat aatatatgga aaactaatgc
     4261 taatttgttc tgtattcacc cagcaggtgt tggtactcct acaaataaat caagcttcag
     4321 aaaaatgttt cagtatgagg tgagagatgc aaatacagca tctgttgttt caggtgcttt
     4381 aggtattcca attagtcgct tatcatcagg aaaaagagat gttttaggta aaaatgtaat
     4441 ggtgaatcag tcacaattag atgctcaagt tcctaacatt caaa
//
LOCUS       DANLVT010000155         4469 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.155, whole genome shotgun sequence.
ACCESSION   DANLVT010000155 DANLVT010000000
VERSION     DANLVT010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4469)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4469)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4469
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.155"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            65..496
                     /locus_tag="PXC99_002331"
     CDS             65..496
                     /locus_tag="PXC99_002331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL5418737.1"
                     /translation="MSNQIALLLMSHGSFARAALASAELIVGQQENVAAIGVVAVDNV
                     ADIKRQMEQTIAELNTDKGLIILTDIVGGTPMNLASSQLTHPNVFACSGLNLPLLLEV
                     LMSRDGNLQEIRENLPLAYQNGFSLRTQQDFVSQEDDDDLL"
     gene            483..950
                     /locus_tag="PXC99_002332"
     CDS             483..950
                     /locus_tag="PXC99_002332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDL5418738.1"
                     /translation="MICFSRIDDRLIHGQVVTTWVNLHRIEQIIVLNDAVAADPTQKQ
                     ILTMAAPQGIKVVAFGIEKFGEVLQKTQITRRTMLLFTNSIDVLRTVELGVSIDKLNV
                     GGMRYQARREQLSKAVSVTPEERQAFKTLLEKGVEVTVQMVPNDEKLNLQEII"
     gene            953..1720
                     /locus_tag="PXC99_002333"
     CDS             953..1720
                     /locus_tag="PXC99_002333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HDL5418739.1"
                     /translation="MLTALLVACWAGICALDDIGTQMIRRPLLIAPVVGLIMGDLETA
                     LIIGATLEVMWMGIGNVGAYSAPDMISGTAIGTALGIAAGEASTAVALAVPTSLLAQQ
                     LLILYRSGVCALNPIAERWAASGDFDKIFRIHYIPMLIAFSIRAIPTFLAVYYGADII
                     AQAVSALPAKVITGLNVAGKIIPAIGIGLLMLMMIKKAELWTFLIAGFTLAVYLKLSV
                     LPITLIALPLALIYDLAVSKKAEAAPTKTADEEDYDL"
     gene            1717..2523
                     /locus_tag="PXC99_002334"
     CDS             1717..2523
                     /locus_tag="PXC99_002334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HDL5418740.1"
                     /translation="MSNKITKQDLNKVFWRMQVLNVTNNFQSMQAIGFLSSFIPVLKR
                     LYKDRPQEERAEAMKRHLKFFNSHVNSDALILGIAAAVEETTKEDEKETVTAIKTGLM
                     GPLAGLGDSLLKFTWLPICGSIGAALALSGNVLGPILMFLLYNSVNIATKYYGIHLGY
                     SKGVDLIHGAGNNILQRLGNMANVVGLMVIGALIASVVKVKVVSQIAAGDNVIKFQEM
                     LDKVMPGLLSLLLTVVIYWILKKTNGKYAATMILATMGICIGLVYAGILG"
     gene            2523..3560
                     /locus_tag="PXC99_002335"
     CDS             2523..3560
                     /locus_tag="PXC99_002335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein phosphatase"
                     /protein_id="HDL5418741.1"
                     /translation="MDSVYDIIRLEQGRYLFRQQPAQSVQIFFLDNPDSKDSKWLAET
                     DLAEFELKLSACEARPFFLIQSANGEQIVAERTLPVAGMNNFRDMGGYVAHQGKRVKW
                     GKLYRSDHLHNLRDEGVAYLDKLGIQTVIDYRSPNEVAKYPNPPINGREQTFRLDPNA
                     HTAELAAQFSADKHDEDRNLVNKIIAQKAEGNLINRYDIVMAQYRNFVEKAECQTAFA
                     EMLRLATDPENAPLVQHCRGGKDRTGFGAMLLLGILGVSKADIIADYMLTHYNRLARN
                     EEKMAIYRTFTQDQDVLDYLLSLIDTQPEFIEQSLNTIETQYGTIEQYAQRVLGITAK
                     EIEALRANYLA"
     gene            3593..4469
                     /locus_tag="PXC99_002336"
                     /pseudo
     CDS             3593..4469
                     /locus_tag="PXC99_002336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251836.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="histidine-type phosphatase"
BASE COUNT         1305 a          854 c         1037 g         1273 t
ORIGIN      
        1 cttcccttgt ttatctgtat aacattttat ttaatagaat gacttataaa tcaaggagtg
       61 acttatgtct aatcaaattg cgttattgtt gatgagccac ggcagttttg cgagggcggc
      121 gttggcgagt gccgagctga ttgtcgggca gcaggaaaat gtggcagcta tcggcgtagt
      181 agcagtggat aatgtagcgg acattaaacg gcagatggag caaaccattg ctgagttaaa
      241 caccgacaaa ggcttgatta ttctcaccga tattgttggt ggtacgccga tgaatcttgc
      301 ctcttctcaa ttaacccacc ctaatgtttt tgcctgttcg ggtttgaatt tacctttatt
      361 gctagaagtg ctgatgagcc gtgacggcaa tttgcaagaa attcgggaaa atctaccgct
      421 tgcataccaa aacggattta gcctacgcac acaacaagat tttgtttcac aggaggacga
      481 tgatgatctg ctttagccgt attgatgacc gtttaattca cggtcaagta gtcaccactt
      541 gggttaattt acaccgtatt gaacaaatta ttgtgttaaa tgatgcggtg gcagcggatc
      601 caacccaaaa acagatttta acgatggcag caccgcaggg aattaaagtg gtcgcgtttg
      661 gcattgaaaa atttggtgaa gtgttgcaga agacacaaat tacccgccgt actatgttgt
      721 tgtttaccaa tagcattgat gtgttacgca ctgtagaact aggtgtatcg attgacaaat
      781 tgaatgtcgg cggaatgcgt tatcaagcta ggcgtgagca gttaagtaaa gcggtttcag
      841 ttacgccaga agagcgtcaa gcatttaaaa ccttattgga aaagggtgtt gaagtaacgg
      901 tacagatggt accgaatgat gaaaaactta acttacagga gattatctag ctatgctgac
      961 tgcactactt gttgcctgct gggcaggtat ttgtgcctta gatgatattg gcacacagat
     1021 gatccgccgt ccgttgttaa tcgcaccggt ggtcggattg attatggggg atttggaaac
     1081 ggcgttgatt attggtgcta cgcttgaagt gatgtggatg gggatcggca atgttggtgc
     1141 atattctgca ccggatatga tttccggaac cgctattggc accgcacttg gtattgctgc
     1201 tggtgaagct tctactgcgg ttgcactcgc agtaccgacc tcactcttgg cacagcagtt
     1261 actcattctt taccgctccg gcgtatgtgc attgaaccca attgctgaac gctgggcggc
     1321 aagcggtgat tttgacaaga ttttccgcat tcactatatc ccaatgttaa ttgccttttc
     1381 tattcgtgct attccaacgt tcttagccgt ctattacggg gcggacatta ttgcccaagc
     1441 ggtctctgct ctgccggcaa aagtgattac cggattaaat gttgcaggca aaattattcc
     1501 tgccatcggt atcggtttgc tgatgttaat gatgattaag aaagccgaac tttggacgtt
     1561 cttaattgct ggctttacgt tggcggttta tctcaaatta tcagtattgc cgattacctt
     1621 aattgcacta ccgcttgcgt tgatttacga cttagcagta agcaaaaaag ctgaagctgc
     1681 accaaccaaa accgcagatg aagaggatta tgacctatga gcaataaaat taccaaacaa
     1741 gatttaaaca aagtgttttg gcggatgcag gtgctgaacg tcacaaacaa cttccaatcg
     1801 atgcaggcga ttggattttt aagtagcttt attccggtat taaaacgact ttataaagat
     1861 cgtccacagg aagaacgagc ggaagcaatg aaacgccact taaaattttt taacagccac
     1921 gttaattctg atgcattgat tttaggaatt gccgctgcgg tagaagagac taccaaagag
     1981 gatgaaaaag agacagtaac cgcgattaaa accggtttaa tggggccgtt agcagggctg
     2041 ggagacagct tgttgaaatt cacctggtta ccgatttgcg gtagtatcgg ggcggcattg
     2101 gcactaagtg gcaatgtgtt aggcccgatt ttaatgttct tgttgtataa cagtgtaaac
     2161 attgcgacga agtattacgg tatccatcta ggttacagca aaggggttga tttaattcac
     2221 ggtgcgggta ataacatttt gcaacgactc ggcaatatgg caaatgtggt tggtttaatg
     2281 gtgattggcg cattaattgc ctccgttgtg aaagtcaaag tagtttcaca aattgccgct
     2341 ggtgataatg tgattaaatt ccaagagatg ttagataaag tgatgccggg actactcagc
     2401 ttacttttaa ctgtcgtgat ctactggatt ttgaagaaaa ctaacggcaa atatgctgca
     2461 acgatgatcc ttgctacgat ggggatctgt atcggcttag tctatgcagg aatactcggc
     2521 taatggacag tgtgtatgac attattcggt tggaacaggg cagatacctg ttccgccaac
     2581 agccggctca atcggtacag attttctttc tggacaaccc tgacagtaag gatagcaaat
     2641 ggctggcgga gactgatttg gcagagtttg agctgaaatt gagcgcttgt gaagcccgtc
     2701 cgttcttcct cattcaatca gcaaacggag aacagattgt tgctgaacgc accttacctg
     2761 ttgccggaat gaataatttt cgggatatgg ggggctatgt cgctcatcag ggcaagcgag
     2821 tgaaatgggg caagttatac cgctccgatc atctgcataa tttaagagac gaaggcgtgg
     2881 cttatcttga taaattggga attcagactg ttattgacta tcgcagcccg aatgaagtcg
     2941 ccaaataccc aaatccccca attaatggca gagagcaaac ttttcggctt gatccgaatg
     3001 cacatactgc cgagcttgct gcccaattta gtgcagacaa gcacgatgaa gatcgtaatt
     3061 tggtcaataa aatcattgct caaaaagctg aaggtaatct tatcaatcgc tacgacattg
     3121 taatggcaca atatcgtaat tttgtcgaaa aagcagaatg ccaaaccgcc tttgctgaaa
     3181 tgttaaggtt ggcgacagac cctgaaaatg caccattggt tcaacactgc cgtggaggga
     3241 aagatcgcac tggtttcggt gcaatgttac tgcttggtat tttaggcgtg agtaaagctg
     3301 atattattgc tgattatatg cttactcatt ataaccgcct tgctcgtaac gaagagaaaa
     3361 tggcgattta ccgtaccttc actcaagatc aagatgtgtt ggactaccta ttgtctttaa
     3421 tcgatactca acccgaattt atcgaacaat cgcttaatac tattgaaacc caatatggta
     3481 ctattgagca atatgcccaa agggtattag gtattactgc gaaggaaatt gaagcattac
     3541 gggcaaatta tttggcgtag aacggtaggg tgtaatattg aacacactac aaatggagaa
     3601 atttcatatg cgttattttg caaaacattg gtataaaact accgcttgtc tgacaacaat
     3661 tttcacagca tttcctcttt ttgctcaacc aattgaaaat ataccaactt cccactacga
     3721 attagaaaaa atcattatat ttagccgaca cgggttacgt tcccctctta cagaaaaagg
     3781 cagtgattta gaaaaatcaa ccccttataa atgggcaaat tggagtgtac cgaccggtca
     3841 tttaacccat aaagggacgc tgttggaaac ctattttggg cagtatcttg gtcaatggct
     3901 cacacataat gggttattgg acaaggcaag ctgtgaaagt gggaagcaga ttgaggttta
     3961 tgctaatagc ctgcaacgta caattggcac tgcacaagct ttggttgccg gtgggttttc
     4021 aggttgtaat gtacaagtta aacaccacca gcagattgga aagatggatc cggtgtttaa
     4081 tccaattatt cgctccgatg accagacatt tgtgcaaaca gcattaagca aaattgacct
     4141 caataaaacc catcagtatt tagcgccatc ctatcattta ttaagcgaaa taatcgatta
     4201 tgctcattca gaaaaatgtt tgcaggaaaa acagtgtgaa ttttttaatg atgttggtaa
     4261 attaaggatt aaaaaggata aataaccagg tgtttccggt acgatgcgat taagtaaaaa
     4321 tattgtcgat gccttattgc tgcaatatta tgaaggtttt cctttaaaag agattgcaaa
     4381 taaccagctt gatagtgatc agaaatggca aacactcaat aaaattaaaa acgattacca
     4441 atttatgcta cgaggagatc catttattg
//
LOCUS       DANLVT010000156         4461 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.156, whole genome shotgun sequence.
ACCESSION   DANLVT010000156 DANLVT010000000
VERSION     DANLVT010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4461)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4461)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4461
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.156"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            28..1080
                     /locus_tag="PXC99_002337"
     CDS             28..1080
                     /locus_tag="PXC99_002337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL5418742.1"
                     /translation="MALLDIRHLSIEIDMPKGRVKMVDNINLTVDEGEICGLVGESGS
                     GKSLIAKVICGMIKDEWIVSADRFRFDDIELLKLSPAERRKLVGDHISMVFQDPLTSL
                     DPSQQIGKQLMQTIQFRGKWWQRFGWKKKKAIELLHRVGIRDHQDIMKSYPSDITEGE
                     AQKVMIAMAVANQPRLLVADEPTNIMESTTQLQVYRLLSSMNQNLGTSILLVSNDMRS
                     IQNWVDSYNVLYCGQTVEIADKESILESSYHPYTRVLLNSSPDFSQPLAFKSSLNTLR
                     GSVPMLQEMPIGCRLGPRCPFAQKKCINKPPLVKVKQHEFACHFPINFREQNLLKNKT
                     ENTPFVVAEIAEKEAF"
     gene            complement(1089..1319)
                     /locus_tag="PXC99_002338"
     CDS             complement(1089..1319)
                     /locus_tag="PXC99_002338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceK/YidQ family lipoprotein"
                     /protein_id="HDL5418743.1"
                     /translation="MKLTACKLVFLLYLMFNLTACGTVLSLVEQDYRVYAGVIKDFQV
                     MQEGGIFAVLAVIDLPLSFVLDTLMLPVTLSQ"
     gene            1449..2531
                     /gene="leuB"
                     /locus_tag="PXC99_002339"
     CDS             1449..2531
                     /gene="leuB"
                     /locus_tag="PXC99_002339"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HDL5418744.1"
                     /translation="MQTYNIAVLAGDGIGPEVMAEAIKVLEATQQKFGFKLNFNQYNI
                     GGAAIDAQGKALPENTLKGCEEADAILFGSVGGPKWTHLLPDEQPERGSLLPLRKHFS
                     LFCNLRPAALYQGLEKFCPLRADIAAKGFDMVVVRELTGGIYFGQPKGRDGEGAQTRA
                     FDTEVYYKYEIERITRVAFESAMKRKKHVTSVDKANVLQSSILWRETVTEVAKEFPEV
                     TLEHMYIDNATMQLIKAPESFDILLCSNIFGDIISDEAAMITGSMGMLPSASLNEQGF
                     GLYEPAGGSAPDIAGKNIANPIAQILSAAMMLRYSFNLGDAADAIETAIQKALADGYR
                     TADLADDSKPLSTSEMGDIIAKNILA"
     gene            complement(2618..3013)
                     /gene="msrB"
                     /locus_tag="PXC99_002340"
     CDS             complement(2618..3013)
                     /gene="msrB"
                     /locus_tag="PXC99_002340"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HDL5418745.1"
                     /translation="MIKPIHALTEQQVDILINHGTERPFTGKFLNEHRVGIYRCARCH
                     NDLFHSDTKFDAGCGWPSFYQTISESSLRYLDDYSLGRHRIEIRCGNCDSHMGHVFPD
                     GPPPTGLRFCLNSAALNFKWEETGEEIDG"
     gene            3238..4242
                     /gene="gap"
                     /locus_tag="PXC99_002341"
     CDS             3238..4242
                     /gene="gap"
                     /locus_tag="PXC99_002341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010129843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HDL5418746.1"
                     /translation="MAIKIGINGFGRIGRIVFRAAQHRDDIEVVGINDLIDVDYMAYM
                     LKYDSTHGRFDGTVEVKDGQLVVNGKAIRVTAERDPANLKWNEIGVDIAVEATGLFLD
                     DETARKHITAGAKKVVLTGPSKDATPMFVNGVNFDTYAGQDIVSNASCTTNCLAPLAK
                     VIHEKFGIKEGLMTTVHATTATQKTVDGPSAKDWRGGRGASQNIIPSSTGAAKAVGKV
                     LPALNGKLTGMAFRVPTTNVSVVDLTVNLEKPATYAEICAEIKRASENEMKGVLGYTE
                     DAVVSTDFNGATETSVFDAAAGIALTDTFVKLVSWYDNEVGYSNKVLDLVAHVYNYKG
                     "
BASE COUNT         1388 a          840 c          961 g         1272 t
ORIGIN      
        1 gtaaaatttt acagattaag gaatagtatg gcattacttg atattcgcca tttaagtatt
       61 gaaattgata tgccaaaagg cagagtaaaa atggtggata acatcaacct gactgttgat
      121 gagggcgaaa tttgtggctt ggtgggagaa tctggttcgg gaaaaagcct catagccaaa
      181 gtgatttgcg gtatgattaa agatgaatgg attgtgagtg cagatcgctt tcgctttgac
      241 gatattgaat tactgaaact ttcgccagcg gaacgccgaa aattggtagg cgatcatatt
      301 tcaatggtat tccaagatcc gcttactagc cttgacccaa gccagcaaat tggtaaacaa
      361 ctgatgcaaa ccattcaatt tagagggaag tggtggcaac gatttgggtg gaaaaagaaa
      421 aaagcaatcg agctactaca ccgtgttggt attcgtgatc atcaagatat tatgaaaagt
      481 tacccaagcg atattaccga aggcgaagct cagaaagtga tgattgcaat ggcggtggca
      541 aatcagcccc gattattggt ggcagatgag ccgactaata ttatggaatc aaccacgcag
      601 ttgcaggttt atcgcttgct ttccagtatg aatcagaatt tgggaacctc aatcttgctg
      661 gtgagtaatg acatgcgtag cattcaaaat tgggttgatt cttacaatgt gctttattgt
      721 ggacaaaccg ttgaaattgc ggataaagag agcattcttg aatcgtctta ccacccctat
      781 actcgagtgt tactcaatag ttcgccggac ttttctcagc ctttagcctt taaaagtagc
      841 ttaaatacgc tacgaggctc agtcccgatg ttacaagaaa tgccgattgg ttgtcgttta
      901 ggccctcgtt gcccttttgc acaaaaaaaa tgtatcaaca aaccgccatt agtgaaagta
      961 aaacagcacg agtttgcctg ccattttccg attaacttta gagaacaaaa tttgcttaaa
     1021 aataaaacgg aaaatacgcc gtttgtggtg gctgaaatag cggaaaaaga ggcgttttaa
     1081 tgtggttatt attggctaag tgtaacgggt aacattaaag tatctaatac gaaactcaag
     1141 ggtaaatcga tcaccgcaag caccgcgaat ataccgcctt cttgcattac ttggaaatct
     1201 tttattacgc cggcataaac acggtaatcc tgttcaacca agcttagtac tgtgccacaa
     1261 gcggtgaggt taaacatcaa atagagtaga aaaacgagtt tacaagcggt caatttcatc
     1321 aaaaaatctc caaatacgct tttattttac gctattttta tcgggttggc gtaaaattcg
     1381 ttttaaaaac agctattttc aggcagaatg tagccgaatc gacattaaat atactaagag
     1441 gatcttatat gcaaacttac aacattgcag tgcttgccgg tgacggcatt gggccggaag
     1501 tgatggcaga agctatcaaa gtgcttgaag cgactcaaca aaaatttggc tttaaactaa
     1561 attttaatca atataacatt ggtggagcag cgattgatgc tcaaggtaaa gcgttacccg
     1621 aaaatacctt aaaaggctgt gaagaggcag atgcgatttt gtttggctcg gtaggtggcc
     1681 cgaaatggac gcatttacta cctgatgagc aacctgaacg aggttcgcta ttaccactgc
     1741 gtaaacattt ctcgctattc tgtaatttac gccctgctgc attgtatcaa gggctggaaa
     1801 aattctgccc attacgtgcc gatattgctg ctaaaggttt tgatatggtg gtggtgcgtg
     1861 aattaaccgg cgggatttat tttggacagc cgaaaggccg tgatggtgaa ggtgcgcaaa
     1921 cgagagcgtt tgacaccgaa gtatactaca aatatgaaat cgagcgtatt acccgtgtgg
     1981 cgtttgaatc tgcaatgaaa cgtaaaaaac acgtaacctc tgtggataaa gccaatgtgt
     2041 tacaaagctc gattttatgg cgtgaaaccg tcacggaagt agctaaagag ttcccagaag
     2101 tcacgcttga gcatatgtat attgataatg cgacaatgca gctaatcaaa gcacctgaat
     2161 cgttcgatat tttattatgc tcaaacatct tcggcgatat tatttccgat gaggctgcaa
     2221 tgattacagg ttctatgggc atgttgcctt cagccagcct caatgagcaa ggtttcggct
     2281 tatatgaacc ggcaggcggt tcagcaccgg atattgccgg taaaaatatt gcgaatccga
     2341 ttgcgcaaat tttatcagcc gcaatgatgt tgcgttatag ctttaactta ggtgatgctg
     2401 ctgatgcgat tgaaacagcg atccaaaaag cccttgctga tggctaccgt accgctgatt
     2461 tagctgatga cagcaaaccg ctttctacct cagaaatggg cgatattatt gcgaaaaata
     2521 ttctcgctta aggctagaag ttaaatagca caagcggtca ttattcgcca aatttttgca
     2581 aattttccgc taataatgac cgcttgttta ttactcgtta gccgtcaatc tcttcgcctg
     2641 tttcttccca cttaaaattc aatgccgcag agttgaggca aaaacgcaac cctgttggtg
     2701 gtgggccgtc cggaaaaacg tgtcccatat gcgaatcaca attcccacaa cgaatttcga
     2761 tacgatgacg tcctaaactg taatcatcta agtaacgtag tgacgattct gaaatcgttt
     2821 ggtaaaaact tggccagcca caaccggcat caaatttagt atctgagtga aataaatcgt
     2881 tatggcatct ggcacaacga taaattccta cccgatgttc attcaaaaat tttccggtaa
     2941 acggacgttc cgtaccgtgg ttgattaaaa tatcaacttg ttgttctgtc agggcgtgaa
     3001 taggtttaat catcagcaat tctcctaaga tagtagcgaa gtcattgtag ctttttttga
     3061 cctgaaaatc gttataaatt tcaaaatttg acatagatca caaaaaattt atctgttata
     3121 ttggaagggt tcttttggct tgtcaggaaa gtgaaaagat gtgctataat tcaagcatct
     3181 ttagtgtagt acataaagaa caaattttgt ttaactttaa tataggtaga aaaatctatg
     3241 gcaattaaaa ttggtattaa cggctttggc cgtatcggtc gtatcgtttt ccgtgcagca
     3301 caacaccgtg atgacatcga agtggtaggt atcaacgact taatcgatgt tgattatatg
     3361 gcttatatgc tgaaatatga ttcaactcac ggtcgttttg acggtactgt tgaagttaaa
     3421 gacggtcaat tagtagttaa cggtaaagcg atccgcgtaa cagctgagcg tgacccggct
     3481 aacttaaaat ggaatgagat cggtgttgat atcgcagttg aagcaacagg tttattctta
     3541 gatgatgaaa ctgctcgcaa acacatcacc gcaggtgcga agaaagttgt tttaaccggt
     3601 ccgtctaaag atgcaacacc tatgttcgta aacggcgtaa actttgatac ttacgcaggt
     3661 caagacatcg tgtctaacgc ttcttgtaca actaactgtt tagcaccatt agcgaaagtt
     3721 attcacgaaa aattcggtat caaagaaggt ttaatgacaa ctgttcacgc aactactgca
     3781 acgcaaaaaa cagtagatgg tccatcagcg aaagactggc gtggtggtcg tggcgcgtca
     3841 caaaacatca ttccttcatc aacaggtgca gcgaaagcag taggtaaggt attacctgca
     3901 ttaaacggta aattaaccgg tatggctttc cgtgttccaa ccactaacgt ttctgttgtt
     3961 gatttaactg taaacttaga aaaaccagca acttatgcag aaatctgtgc tgaaatcaaa
     4021 cgtgcttcag aaaacgaaat gaaaggcgta ttaggctaca cagaagatgc agttgtttca
     4081 acagacttca atggtgcaac tgaaacttca gtatttgatg cagcagcagg tatcgcatta
     4141 actgatactt tcgttaaatt agtatcttgg tacgataacg aagttggcta ctcaaacaaa
     4201 gtattagact tagttgctca cgtatataac tacaaaggtt aattgctaag ttatatttta
     4261 aatatagagc caaattctga acggaatttg gctcttttgc tgcgaacaat aaattgaata
     4321 tagtcgcgtt ttcccataaa atcaatttcc tacaaacagg aactaagcac agtaaggcag
     4381 attttcttgc tctttgcagt ttattttgtg taaataaata ttattagaga ctacaaacga
     4441 ttaataaata tcaagtttcc t
//
LOCUS       DANLVT010000157         4375 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.157, whole genome shotgun sequence.
ACCESSION   DANLVT010000157 DANLVT010000000
VERSION     DANLVT010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4375)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4375)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4375
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.157"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(137..445)
                     /locus_tag="PXC99_002342"
     CDS             complement(137..445)
                     /locus_tag="PXC99_002342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HDL5418747.1"
                     /translation="MKKYIATMLLAFGLVHSSYAQEKTAQIETKQAEKTVVLHIPEMY
                     CQLCVYLVNKELRAVEGVISTKASMKERKATVVVKESVDNQALIQAVGNLKYTAKVIE
                     "
     gene            complement(447..815)
                     /locus_tag="PXC99_002343"
     CDS             complement(447..815)
                     /locus_tag="PXC99_002343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418748.1"
                     /translation="MNSSLKSYNHKFITMCVTAIVSAVTSTFCCIGPLVYLVFGISSP
                     WLMELNQLEFLQLPMLLISLAAFGYGFWLLNFSNKIICTKYFSRRTLVILYWVVSVVV
                     MFFLTYPYVLPYILEMWSGE"
     gene            complement(790..1896)
                     /locus_tag="PXC99_002344"
     CDS             complement(790..1896)
                     /locus_tag="PXC99_002344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HDL5418749.1"
                     /translation="MNKLIASLVASSCATAFAAPVQQNNFHTTTHTYEFTQSYDLVVP
                     QGSKGTTNLWIPLPSDTDYQTVKSIEFEGSYKNAYITENNAYGAKTLFATWDTDAPKR
                     DLKVKMVIQTQDREPMAQGALANYQMPEKITYSVDVLEYLKPTAHIKTDGIVKEYADK
                     IVGNEQNPLKKAELIHKWIVDNMERDNSVLGCGDGDVEKILTTKVLKGKCTDINSVFV
                     ALARASNIPAREVFGIRLGQAVKMGQYSKTAFGSSKDGVANESGGQHCRAEFYLAGFG
                     WVPVDSADVAKMRLAEKKDVDDADVQAVSKYLFGNWEMNWVGFNHGRDFDLYPQPELT
                     PLNNFGYPYAEVGGDPLNSFEAKEFGYEFISKEL"
     gene            complement(2136..3179)
                     /locus_tag="PXC99_002345"
     CDS             complement(2136..3179)
                     /locus_tag="PXC99_002345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDL5418750.1"
                     /translation="MQPINIAIAGAGFSSRVFHIPFLKQDARFNIVKVYERTSNNAAE
                     WLPNAETVRDFNALLTPEVDLVLITTPNQTHYAMVKESLLAGKHVLVEKPLVATVAEA
                     EELAELAKRQGKVLYVYQNRRWDSHIATAKSLMEQNLLGELVDCEIRFDRYAKEKNVK
                     VWKESGELGTGLVYDLGVHLIDQALYLFGKPEAVYADVRYQHEGALVDDNFDIQLYYA
                     NGFKVVLKASRYAREPSPTFVLHGKLGSYLKQTPDNQEDLLKNGVQPIGKDWNIEEKE
                     NWGILHTEVEGNVVRQPYRNAEVSYQNLFDDLYQAIAHNAEPIIKLEDVIFVLKVIES
                     VFESAKLGQKIYL"
     gene            complement(3283..3567)
                     /locus_tag="PXC99_002346"
     CDS             complement(3283..3567)
                     /locus_tag="PXC99_002346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418751.1"
                     /translation="MRYWLISLSILLSGCVVPVTPTGQAGIPMPIIIGVSDPLDSKEV
                     HICTLKPFTQEYRSEHSSRGRAKLNVQKQCRANHSEMFCEEKDIVCKTYD"
     gene            complement(3597..3782)
                     /locus_tag="PXC99_002347"
     CDS             complement(3597..3782)
                     /locus_tag="PXC99_002347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HDL5418752.1"
                     /translation="MKCRQATELISQSCDEKLRLQQHMRLQLHLLVCPKCRNFNKNTK
                     KLGKILRAYCNDKDAPF"
     gene            complement(3779..4345)
                     /locus_tag="PXC99_002348"
     CDS             complement(3779..4345)
                     /locus_tag="PXC99_002348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HDL5418753.1"
                     /translation="MKSLSSTQIEEIRKQMVKFATLQLADKDLAEDVVQDALTNAYKH
                     SASFRREAALKTWIFAILKNKILDLLRTRKRHIPVSSLCEEEESPSAFFDRHDHWLEH
                     QDVTEWRGVAQSTYQKEFWAIFDICLNKLPAQQARVFMMREHLEMSSAEICQECEISL
                     SNLNVLLHRARLRLQECLSRNWFREESK"
BASE COUNT         1289 a          946 c          812 g         1328 t
ORIGIN      
        1 caaaatgaga aacaactttc aaaataaatt attttttcat tttaaatcaa aacaaaagtg
       61 aagtttgaat attagatggg ggaaaaaagg aaggctaaat taaaaaagct caaacaataa
      121 tgtttgagct ttggttttat tcaatgactt ttgcagtata tttgaggttt ccgaccgctt
      181 gtatcagggc ttggttatcc acactttctt ttaccaccac agtcgctttt cgctctttca
      241 ttgaggcttt ggtggaaatc acaccttcta ctgctcgtag ttctttattg actaaataaa
      301 cgcagagctg gcagtacatt tccggaatat ggaggacgac ggttttctct gcttgtttcg
      361 tttcaatttg agctgttttt tcttgtgcgt agcttgaatg aaccaaacca aaagccaaca
      421 gcatcgttgc gatatatttt ttcattttat tctccgctcc acatttccaa aatgtaaggc
      481 aatacataag ggtaagttaa aaagaacatc accaccacag aaactaccca atacaaaatg
      541 accagggttc tgcgggagaa gtatttggtg cagatgattt tgttggaaaa attcagcaac
      601 cagaagccat agccaaacgc agcgagcgaa atcagcaaca tcggcagttg tagaaactcc
      661 agttggttta gctccatcaa ccaaggggaa gagatgccaa acactaaata aaccagtggc
      721 ccaatacaac agaatgtgga ggtcaccgcc gacactatgg cggtcacgca cattgtgata
      781 aatttatggt tataactctt tagagatgaa ttcatagcca aattctttcg cctcaaacga
      841 gtttaacggg tcaccaccta cctcagcata agggtagcca aagttattca gtggtgtaag
      901 ttccggttgt ggatataaat cgaaatcacg tccgtgattg aagcctaccc agttcatttc
      961 ccagttgccg aataagtatt tcgagaccgc ttgaacatca gcatcatcca cgtctttttt
     1021 ctcggctaaa cgcattttag cgacatcggc agaatctaca ggcacccagc cgaagcctgc
     1081 taaatagaac tctgcacggc agtgctgccc gccgctttca ttcgccacgc catcttttga
     1141 gctaccaaat gcggttttgg aatattgccc catttttacc gcttgcccta aacgaatacc
     1201 aaacacttca cgagcaggaa tgttagaggc acgagcaagt gctacaaaca ccgagttgat
     1261 gtcggtacat ttacctttta gcactttggt ggtgagaatt ttctccacat cgccatcgcc
     1321 acagcctagc accgagttat cacgttccat attatcaaca atccacttgt ggataagttc
     1381 cgcttttttc aacggatttt gctcgttacc cacaatttta tcggcatatt ctttcacaat
     1441 accgtctgtt ttaatgtgag ccgttggttt taaatactcc aatacatcaa cagaataagt
     1501 gattttctcc ggcatttggt aatttgccaa cgccccttga gccataggct cacgatcttg
     1561 ggtttggatc accattttca cttttagatc acgctttggt gcatcagtat cccaagtggc
     1621 aaacaaggtt tttgcaccat aagcgttatt ttctgtgata taggcgtttt tgtaacttcc
     1681 ctcaaactct atcgatttta ccgtttgata atcggtatca gacggcaacg gaatccacaa
     1741 attagttgtt cctttcgagc cttgtggcac aactaaatca taagattgcg taaattcgta
     1801 agtgtgggta gtggtgtgga aattgttctg ttgaacagga gcagcaaaag ccgtcgcaca
     1861 gcttgaagcc accaaagagg caataagttt attcattgaa atgatcctta ttagagtgaa
     1921 aaaacagtta aaacttaaca tattaagtat tctaactacg gattgaggtt gcatattagc
     1981 caatcgagat gggaaaagca atgggggaga tgatttttta gatagtgcaa gcgtccacgc
     2041 ttgtactaga aacaaagcta aaataatcaa taggcacaag cgtggacgct tgcgccatca
     2101 gagagaataa caagcggtca aaaatcctca aaattttaca aatagatttt ttgccctaat
     2161 tttgcacttt caaatacgct ttcgatcact tttagcacaa aaatgacgtc ttcgagtttg
     2221 ataattggct cagcattgtg agcgatggct tggtacaaat catcaaacaa gttttgataa
     2281 ctgacttcgg catttcgata gggctggcga accacattac cttccacttc agtgtgtaaa
     2341 attccccagt tctccttttc ttcgatattc caatctttgc caataggttg tacgccattt
     2401 ttcagcaaat cttcttgatt atcgggagtt tgtttcagat aagagcctaa ttttccgtgt
     2461 aatacaaatg tcgggcttgg ttcacgagca tatcggctgg ctttcagcac cactttaaaa
     2521 ccgttagcat aatagagctg aatatcaaag ttatcatcaa ccaatgcccc ttcgtgctga
     2581 taacgcacat cagcatacac cgcctccggc ttcccgaaaa gatacaaagc ttggtcaatt
     2641 aaatgtacgc ctaaatcata cactaaacct gtaccaagct cgcctgattc tttccatact
     2701 ttaacatttt tctctttcgc ataacggtca aaacgaattt cgcaatctac caactctccc
     2761 agtaaatttt gctccattag cgattttgcc gtcgcaatat ggctgtccca acggcggttt
     2821 tggtacacat aaagcacctt tccttgccgc tttgcaagtt ccgccaactc ttccgcctca
     2881 gccactgttg ccactaacgg tttttcaact aaaacgtgtt tgcctgcaag caatgactct
     2941 tttaccattg cataatgggt ttgattcggt gtggtaatca gcactaaatc cacttctggc
     3001 gttaaaagag cgttgaaatc ccgcactgtt tctgcattcg gcaaccattc tgccgcattg
     3061 ttagaggttc gttcatatac ctttacaata ttaaaacgag catcttgttt caaaaacggg
     3121 atatgaaaaa ctcggctgga aaagccggca cctgcgatgg caatattgat gggttgcata
     3181 gacaatcctc ataaaatttt gatgttatct gcttaaataa acaagcggtc aaattttagg
     3241 aaaattttgc aaaaaacaga taaaatacga ccgcttgttt aactaatcat aggttttgca
     3301 aacaatatct ttttcttcac aaaacatttc actgtggttt gcacggcatt gcttttgtac
     3361 atttaatttg gctctgcctc ggctactatg ttcactacga tattcctgag taaatggctt
     3421 tagagtacaa atgtgaacct ctttggaatc aagtggatct gagacaccaa ttataatcgg
     3481 catagggata ccggcttgcc ccgtaggagt aaccggcacg acacagccac ttaatagtat
     3541 gcttaaactt attaaccaat aacgcatatt tttctccttt taaaatgtat aataaatcag
     3601 aacggagcat ctttatcgtt acagtaagct cttaatatct tgcctaattt cttggtattt
     3661 ttattaaaat ttcggcattt agggcatacc aaaagatgca actgcaaacg catatgttgt
     3721 tgcaaacgaa gtttctcatc acaagactgt gaaataagtt ctgttgcttg cctgcatttc
     3781 attttgattc ctctctaaac caattgcgag ataaacactc ttgtaaacgt aaacgagcac
     3841 gatgaagtaa tacatttaag ttagagagag aaatttcaca ttcttggcaa atttccgcac
     3901 tactcatctc caaatgttca cgcatcataa atactcgtgc ttgctgggcg ggtaatttat
     3961 ttaaacaaat atcaaaaatt gcccaaaatt ctttttggta agttgattga gctacccccc
     4021 tccattcagt tacatcttga tgttccaacc aatgatcgtg gcgatcgaaa aaggcacttg
     4081 gtgattcttc ttcctcacat agagaactga ctggaatatg tcgttttcgt gttctgagta
     4141 aatctaaaat tttgttcttt aaaatagcaa aaatccaagt tttaagtgca gcttctcgcc
     4201 gaaaagaggc tgaatgctta taggcattgg ttaaggcatc ctgtacaaca tcctcagcta
     4261 aatctttatc ggctagttgt agggtggcaa atttaaccat ttgctttcta atctcttcta
     4321 tctgtgtaga agatagactc ttcatatatc tcctttaggg aatacccaat aaaaa
//
LOCUS       DANLVT010000158         4263 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.158, whole genome shotgun sequence.
ACCESSION   DANLVT010000158 DANLVT010000000
VERSION     DANLVT010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4263)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4263)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4263
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.158"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            44..1252
                     /locus_tag="PXC99_002349"
     CDS             44..1252
                     /locus_tag="PXC99_002349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HDL5418754.1"
                     /translation="MSKNLILILNCGSSSLKFAILDPKTGDEKLSGLAEAFHLEDARI
                     KWKLNGEKGNADLGAGAAHSEALTFIAEKLLSDELKAGIGAIGHRIVHGGEKFTSSVV
                     ITDEVIKGIEDATQFAPLHNPAHLIGIKEAFRIFPELKDKNVAVFDTAFHQTMPEHAF
                     LYALPYTFYKENGIRRYGFHGTSHFYITSQVAELAGKSVEQTNAIICHLGNGGSVSVV
                     RNGKCIDTSMGLTPLEGLVMGTRSGDLDPAIISFLYNNLGMSMDEIDTTLVKKSGLLG
                     LTGVTSDCRYAEDNYNDVSKPEAKRALDVYSYRLAKYIGSYMAILGDDHLDAIAFTGG
                     IGENSGLVRELTLNHLKLFGIKLDQERNLAARFGKDGVITADESTFKAVVIPTNEELV
                     IAQDTAKLAL"
     gene            1305..3440
                     /gene="pta"
                     /locus_tag="PXC99_002350"
     CDS             1305..3440
                     /gene="pta"
                     /locus_tag="PXC99_002350"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005542370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HDL5418755.1"
                     /translation="MSRTIILIPISTGVGLTSVSLGLVHALEQKGSKVGFLKPISQPI
                     SGEDTLDRSTTIIRAEQTTEVGEPFMLSEAETLIGQNQTDVLLEKVVERHQKLSKNNE
                     IVIVEGLIPTRKNSYANSINYEMAQALDAEIVLVAAPASDTPAQLKERVEAAASQFGG
                     RNNPNLLGVIINKFNAPVDDSGRTRPDLTEIFDSFQHSNNNVSEVEHLFAKSPIKLLG
                     CISWKAELIATRAIDVAKHLGASIINEGEIKARRIRGVTFCARNLPNMVDHFKAGSLL
                     VTSADRPEVLVAASLAVMNGIEIGAILLTGGYKIDSSIAKLCQQAFETGVPVFRIEGN
                     TWQTALSLQSFSLEVPVDDKERIAAIKEYMASKFNVGFIDEVSKAATRARRLSPAAFR
                     YQLTEYARQAKKRIVLPEGDEPRTVKAAALCAERGIAECVLLANPTDVQRVAEAQGVV
                     LGKGVTIIDPASIRENYVDRLVELRKAKGMTEVVAREQLLDTVVLGTMMLEANEVDGL
                     VSGAVHTTANTIRPPMQIIKTAPGSSIVSSIFFMLLPDQVLVYGDCAVNPDPTAEQLA
                     EIAIQSAESAKAFGIDPRVAMISYSTGTSGSGADVEKVKEATRIAQEKRPDLIIDGPL
                     QYDAAIMEDVARSKAPNSPVAGKATVFVFPDLNTGNTTYKAVQRSADLVSIGPMLQGM
                     RKPVNDLSRGALVDDIVYTIALTAIQATQ"
     gene            3554..4234
                     /gene="can"
                     /locus_tag="PXC99_002351"
     CDS             3554..4234
                     /gene="can"
                     /locus_tag="PXC99_002351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonate dehydratase"
                     /protein_id="HDL5418756.1"
                     /translation="MEKIERLFANNHAWATKMKDEQSDYFKELAEHQKPTYLWIGCSD
                     SRVPAEKLTGLGPGELFVHRNVANMVIHTDLNCLSVVQYAVDVLEIEHIIICGHTNCG
                     GINAAIAQKELGLINNWLLHIRDIWFKHSHLLGKLPYEERSNVLTRLNVAEQVYNLGQ
                     SSIIKTAWEQGKSLSLHGWVYDVTDGFLIDQGVMATSRETLEITYRNAIAKITTEANE
                     KIVLNDEN"
BASE COUNT         1331 a          791 c          871 g         1270 t
ORIGIN      
        1 gtattttctt caaactcatt tcataaaata aggtaatttg accatgtcta aaaacttaat
       61 cttaatcctt aactgcggta gttcatctct taaatttgct attttagatc ctaaaacagg
      121 tgatgaaaaa ttatctggac ttgctgaagc ttttcattta gaagatgcac gtatcaagtg
      181 gaagttaaac ggggagaaag gtaatgctga tttaggtgca ggtgccgcac atagtgaagc
      241 acttaccttt attgctgaaa aattgttatc tgacgaatta aaagcaggta tcggcgcgat
      301 tggtcatcgt attgttcatg gcggtgaaaa attcacctca tcagttgtaa ttaccgatga
      361 agtgattaaa ggtattgaag atgcaacgca atttgcacca ttacacaacc ctgcgcattt
      421 aattggtatt aaagaagcat tccgcatttt ccctgaatta aaagacaaaa acgtagctgt
      481 atttgacact gcattccatc agacaatgcc ggaacacgca ttcttatatg cacttccata
      541 tacattctat aaagaaaatg gtattcgtcg ctacggtttc catggcacaa gccacttcta
      601 tatcacctca caagttgcag aattagcagg taagtctgtt gagcaaacca atgccattat
      661 ttgccactta ggtaacggtg gttctgtttc tgttgtacgc aatggtaaat gtattgatac
      721 ctcaatgggt ttaactccat tagaaggttt agtaatgggt actcgctctg gtgacttaga
      781 ccctgcgatt atctctttct tatacaataa cttaggtatg tcaatggacg aaattgatac
      841 tactctagta aaaaaatctg gtcttttagg tttaactggc gtaactagtg actgtcgtta
      901 tgcggaagat aattacaatg acgtatcaaa accggaagca aaacgtgctt tagatgtata
      961 tagctatcgt ttagctaaat atattggttc atatatggca attttaggcg atgaccactt
     1021 agatgctatc gcatttacag gtggtatcgg tgaaaattca ggcttagtac gtgaattaac
     1081 cttaaatcac ttaaaattat ttggcattaa gttagatcaa gagcgtaacc ttgctgcccg
     1141 ttttggtaaa gatggagtca ttacagcgga cgagtcaaca tttaaagctg ttgttatccc
     1201 aactaatgaa gaactcgtga ttgcacaaga taccgctaaa ttagcattat aatcataggg
     1261 ggcagatatt ctgccctttc actttctttt aatttggaaa tattatgtct agaacgatca
     1321 ttcttatccc tatttcaact ggtgttggtt taaccagtgt tagcttaggt ttagtacatg
     1381 ctttggagca aaaaggttct aaagtaggat ttttaaaacc gatttctcaa cctatcagcg
     1441 gtgaagatac gttagaccgc tcaacaacga ttatcagagc agaacaaaca acagaggttg
     1501 gtgagccgtt tatgttaagc gaagctgaaa cattaatcgg tcaaaaccaa acggatgtat
     1561 tgttagaaaa agtggtggaa cgccaccaaa aattatcaaa aaataatgaa attgtcattg
     1621 ttgaaggttt aattccaacg cgtaaaaact catacgctaa cagcattaac tatgaaatgg
     1681 ctcaagccct tgatgctgaa attgtattag ttgcagcacc ggcctcagat acaccagctc
     1741 aattaaaaga gcgagttgaa gctgccgctt cacaatttgg tggacgtaac aacccaaatt
     1801 tactgggcgt tattatcaat aaattcaatg caccagtaga tgattcaggt agaacccgtc
     1861 cagatttgac tgaaattttt gattcatttc aacactcaaa taataatgtt tcagaagtcg
     1921 agcatctttt tgctaaaagt ccaattaagc tgttaggctg tattagctgg aaagcagaac
     1981 ttattgctac acgagcaatt gatgttgcaa aacatttagg cgcttcaatt attaatgaag
     2041 gcgaaataaa ggctcgtcgg attcgcggtg tgacattctg tgcacgtaac ttaccaaata
     2101 tggtcgatca ttttaaagcc ggtagtttat tagttacctc tgcggatcgt cctgaagtgt
     2161 tagttgctgc atcgttggcg gtaatgaatg gcatcgaaat tggtgctatt ttactaaccg
     2221 gtggttataa aattgatagc tcaattgcaa aactttgcca acaagcattt gaaaccggtg
     2281 tgcctgtatt ccgtattgaa ggtaacactt ggcaaaccgc attaagccta caaagcttca
     2341 gcttagaagt gcctgtagat gataaagagc gtattgctgc aattaaagaa tatatggcaa
     2401 gcaaatttaa tgtaggtttc attgatgagg tttctaaagc cgctactcgt gcaagacgtt
     2461 tatcacctgc agcattccgt taccaattaa ccgaatatgc ccgtcaagcg aaaaaacgca
     2521 ttgttttacc tgaaggagat gagcctcgta ctgtgaaagc ggctgcatta tgtgctgagc
     2581 gtggcattgc agaatgtgtg ttattagcta acccaacaga cgtacaacgt gttgctgaag
     2641 cacaaggcgt ggtattaggt aaaggcgtaa cgattattga ccctgcgagc attcgtgaaa
     2701 attatgttga tcgcttagtt gaattgcgta aagcaaaagg aatgactgaa gttgttgctc
     2761 gtgagcaact tttagataca gttgtattgg gtacaatgat gcttgaagct aatgaagtgg
     2821 acggtttagt ctcaggcgca gttcacacaa ccgctaacac tattcgccca ccaatgcaga
     2881 tcattaaaac tgcaccggga agctctattg tatcttctat cttctttatg ctactacctg
     2941 atcaagtatt ggtatatggt gactgtgcgg taaaccctga cccaactgca gaacagctag
     3001 cggaaattgc gattcaatca gcagaatctg ccaaagcctt tggtattgac cctcgtgttg
     3061 caatgatctc ctactctacc ggtacatcag gttcaggtgc ggatgtagaa aaagtgaaag
     3121 aagcaactcg tattgcccaa gaaaaacgtc cagatttaat cattgatggc ccattacaat
     3181 atgatgcggc gattatggaa gatgttgccc gctcaaaagc accaaattca cctgtagcag
     3241 gtaaagcaac tgtatttgtc ttcccggatt taaatactgg taataccacc tataaagcgg
     3301 tacaacgttc ggcagattta gtctctatcg gcccaatgtt acaaggtatg cgtaaacctg
     3361 taaatgactt gtcccgtggg gctttagttg acgacatcgt ttatactatt gcgttaactg
     3421 cgattcaagc aacgcaataa ttccctccca aatgaaacca aatgccctta aaactaaggg
     3481 catttttatt ttttacctac ccgacttttc aatttaatca tataatcaag attagtgtta
     3541 aaaaggagaa tttatggaaa aaattgaacg cttatttgcc aataaccacg cctgggcaac
     3601 taagatgaaa gatgaacaat cggattattt taaagaatta gcggaacatc aaaagccaac
     3661 ctatttatgg attggctgtt ccgatagtcg tgtgcctgct gaaaaactca cagggttagg
     3721 ccccggagaa ttatttgttc atcgaaatgt agcaaatatg gtgattcaca ctgatcttaa
     3781 ttgtctgtcg gttgttcaat atgcggtaga tgtattagaa attgagcata ttattatctg
     3841 tggtcacact aattgtggtg gtatcaatgc ggcaattgca caaaaagaac ttggtttaat
     3901 taataactgg ttgttacata ttcgtgatat ctggtttaaa cacagccatt tactaggcaa
     3961 acttccctat gaagagcgat caaatgtctt gacccgatta aatgttgcag aacaagttta
     4021 taatttaggt cagtcctcta ttattaaaac cgcttgggaa cagggtaaat ccctctcgct
     4081 acacggttgg gtatacgatg ttacagatgg tttcttgatt gaccaaggtg ttatggctac
     4141 tagccgagaa acattagaaa ttacctatcg taatgcaata gctaaaataa caaccgaagc
     4201 aaacgaaaaa atagttttaa acgatgaaaa ttagccattg taagcggtta aatttatcga
     4261 ttt
//
LOCUS       DANLVT010000159         4182 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.159, whole genome shotgun sequence.
ACCESSION   DANLVT010000159 DANLVT010000000
VERSION     DANLVT010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4182)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4182)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4182
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.159"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..459
                     /locus_tag="PXC99_002352"
     CDS             <1..459
                     /locus_tag="PXC99_002352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418757.1"
                     /translation="SEIIKNGICLNFARQLISAKHPETKKRISLHLKILDFDKGRNTY
                     LAPADLFILDEHLNEFILGNGGDEIEKISKNNKTQFSSTIRENQINFIRALLYMDYGI
                     ETPQEVKNAINSGELGRKIEKFRRENPNIENDKNFKFPTSVTLSNWYSKA"
     gene            537..788
                     /locus_tag="PXC99_002353"
     CDS             537..788
                     /locus_tag="PXC99_002353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5418758.1"
                     /translation="MQLQKTISTFTQPNHRGIYVMTYSEQSYLNVKDVCEMLQLNRST
                     IYRQIKQGIFPKPTKIGKSSRWKFADIKAFLEPKPQEAN"
     gene            788..1168
                     /locus_tag="PXC99_002354"
     CDS             788..1168
                     /locus_tag="PXC99_002354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5418759.1"
                     /translation="MAGLSIICPFCGNTARIRGSSRPSLLSYQAQLTCSNCGQLKADF
                     VGQLINIKRAVFIECDEANQWDKPENELIKEGKIQGKDNAQRLKELRGSQQDLFAKVP
                     GQLPPEKITPAEKIAKRANLSKTH"
     gene            1479..2540
                     /locus_tag="PXC99_002355"
     CDS             1479..2540
                     /locus_tag="PXC99_002355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ash family protein"
                     /protein_id="HDL5418760.1"
                     /translation="MKDLSPNQKQYTPFSAIMQKNLMDLLTKSARSPYSFSTVAKSTA
                     GRENPELHNTANSSTPLTRAIFIRSLHTPKERRNKACSSMVACSGQGSPLAVFGSPFV
                     AVFSPRYTLSPCTVRSVADSPLKLTNGLQKMNPSQITGKNRLNSFLFNNNQNDYSLLF
                     TNAKQSTPISAKISKNQDLCLTTLNRSPYASRAFAKSKAECGNSKEHQANNSTPLTRA
                     FFVRSSRTPKECQNKACSSMVACSGQGFALDCLPDVAVFHPVTRYRPTLWKMLAIAPK
                     NQHQELSKMKAFAYSFLCAIRTPETDTYQETVVRIISDSEQNARFQLTADYRLLLPRP
                     VAKIRLNSTAYTVKGGIYA"
     gene            2533..2697
                     /locus_tag="PXC99_002356"
     CDS             2533..2697
                     /locus_tag="PXC99_002356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418761.1"
                     /translation="MLNYSDIEQIRYFMDQAEEALDNNEEFKAVAELNTAQQFILALL
                     MNYEQGGENE"
     gene            2690..3325
                     /locus_tag="PXC99_002357"
     CDS             2690..3325
                     /locus_tag="PXC99_002357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418762.1"
                     /translation="MNNTTGQATQRNWQEIIANLQRLSESGESTIEIAKRYEAFSKTA
                     EQIQALVNNNGSEAEKEAFFAPVERFYLGLLETETRLKDAIAKDEENAQKLKEQKAAR
                     EAEQKRWDNLPFYAKDKFSDLICIESRETLEDKFFAISCMFDALKAVPNLLEIGLREE
                     GKDSVIDRLAEMSKLYLLFVDEQFSLLANEIQSGKYGKLDLNGSQNKGDLC"
     gene            3319..3537
                     /locus_tag="PXC99_002358"
     CDS             3319..3537
                     /locus_tag="PXC99_002358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418763.1"
                     /translation="MLTHRITLPDGTEIEFFAETDKETFAEIQRDLEGLKLPTFAEFV
                     AQERKKHRAKQAVKKARKIAKLARRKNR"
     gene            3679..4164
                     /locus_tag="PXC99_002359"
     CDS             3679..4164
                     /locus_tag="PXC99_002359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418764.1"
                     /translation="METALQLAQHLTGWTEEENSQAILKNFLDWKETFGEKTREETKI
                     VETLLDWINENEASFIEYPFNQEQRTPPKVAGYRILANNSTKTNEYFFIYPKQFKETL
                     AEFPLLMACTKLHEAGILHKPPRPEKGYEFQYTIAPKITGGSKKRAYKIVPIALEEEN
                     E"
BASE COUNT         1525 a          865 c          797 g          995 t
ORIGIN      
        1 tctgaaatca ttaaaaatgg aatttgttta aattttgcaa gacaattaat atcagcaaag
       61 cacccagaaa caaaaaaaag aataagttta catctaaaaa tactggattt tgacaaaggc
      121 agaaatactt atttagcacc tgcagattta tttattcttg atgaacatct aaatgagttc
      181 atattaggta acggcggaga tgaaatagaa aaaatatcaa agaataacaa aactcaattc
      241 agctcaacaa tacgagaaaa ccaaatcaat tttattagag ccttgcttta tatggattat
      301 gggatagaaa cgcctcaaga agtaaaaaac gccattaatt caggggaact aggcagaaaa
      361 atagagaaat ttaggagaga aaaccccaat atagagaacg ataaaaattt caaattccct
      421 acaagtgtaa cccttagcaa ctggtattca aaagcctaaa atattggaaa tttccgaatc
      481 tactttggaa atttccaaac ttctaaaacc tactcacctc acaatctccc ccaacaatgc
      541 aactacaaaa gacaataagc acattcacgc aaccaaacca cagggggatt tatgtaatga
      601 cctattcaga acaaagctat ttaaacgtga aagatgtatg cgaaatgcta caactcaacc
      661 gctcaactat ttatcgacaa attaagcaag ggattttccc taagccaact aagatcggaa
      721 aatcaagccg gtggaaattt gccgacatca aagcattttt agagccaaaa ccacaggagg
      781 cgaactaatg gcagggcttt ctattatttg cccgttttgt ggcaataccg cacgaattag
      841 aggcagttct cgccctagcc ttttaagtta tcaagcacag ctaacttgtt caaattgcgg
      901 acaattaaaa gccgactttg tagggcagct aatcaacatc aaacgggccg tatttattga
      961 gtgtgatgaa gcaaatcaat gggataaacc cgaaaatgaa ctaatcaagg agggaaaaat
     1021 tcaaggcaaa gacaatgctc aacgcctcaa agaactaaga ggctcacagc aagatttatt
     1081 tgcaaaggtg ccggggcaac taccgcccga gaagatcact ccggcggaga aaatcgccaa
     1141 gcgggcaaac ctttcaaaaa cgcattaaac agggggataa atggcaacaa aaaagccccg
     1201 caaggcaaac catacggagc tattaaaatc gcataatgcg aaagatatgc aaagaaatta
     1261 aagcaggctt gacgatttct gaaggtgtta gattctttct aaagtcttta gggataggtt
     1321 tatttctagc attgtttttt tattttttgc cgtatttagc agaatttata atcgccgtaa
     1381 aaaaacaact agcaaaaaaa tcggcttact ttcaatgata aaagcaagcc gaaatgacaa
     1441 tccaaatttt taactttaaa taaagagtac aagaagaaat gaaagattta tctccaaatc
     1501 agaaacaata tacgccattt tcggctataa tgcaaaaaaa tttaatggat ttattgacaa
     1561 aatccgcccg ttcgccttat tctttctcta ccgttgcaaa atcaacggca gggcgtgaga
     1621 accctgaact acataatacg gcgaacagta gcacgccttt aacccgtgct atttttattc
     1681 gtagcttaca cacacctaaa gaacgccgaa ataaggcgtg ttcgtctatg gtagcgtgta
     1741 gcgggcaagg ttcgcccttg gctgtttttg gttcgccgtt tgtagcagtt ttctcacccc
     1801 gttacacgct atcgccctgc accgtgagaa gtgtagccga tagtccttta aaattaacaa
     1861 acggactaca aaaaatgaac cctagccaaa ttacaggcaa aaaccgccta aactcttttc
     1921 tatttaacaa taatcaaaat gattattcgc tattatttac taatgcaaaa caatcaaccc
     1981 cgatttctgc taaaataagc aaaaatcaag atttatgctt gacaaccctc aatcgttcgc
     2041 cttatgctag ccgtgctttt gcaaaatcaa aagccgagtg tggaaactcg aaagaacatc
     2101 aggcgaacaa tagcacgcct ttaactcgtg ctttttttgt tcgtagctca cgcacaccca
     2161 aagaatgcca aaataaggcg tgttcgtcta tggtagcgtg tagcgggcaa ggtttcgccc
     2221 ttgactgctt acctgatgtt gcagttttcc accccgttac acgctatcgc cctacattgt
     2281 ggaaaatgtt agcgatagcc cctaaaaatc aacatcagga gctatcaaaa atgaaagcat
     2341 tcgcttattc attcctttgt gctattcgca cacccgaaac agatacttat caagaaaccg
     2401 tagtacgcat tatttcagac agcgaacaaa acgcccgttt tcagcttaca gccgattatc
     2461 gcttactact cccccgccct gttgcaaaaa tccgcctaaa ttctaccgct tacacggtga
     2521 aaggggggat ttatgcttaa ttattccgat attgaacaaa tccgctattt tatggatcaa
     2581 gccgaagagg ctttagacaa taatgaagag ttcaaagccg tagcagaact taacacagca
     2641 caacaattta ttctggcttt attaatgaac tacgaacaag ggggtgaaaa tgaataatac
     2701 aacaggacaa gctacgcaaa gaaactggca agaaattatc gctaatttgc agagactcag
     2761 cgaatccggg gaaagcacaa tcgaaatcgc taaacgctat gaggcatttt ctaaaaccgc
     2821 cgagcaaatc caagccctag tgaataacaa cggcagcgaa gccgaaaaag aggcgttttt
     2881 tgcccctgtt gagcgttttt atcttggctt actagaaacc gaaacacgct taaaagatgc
     2941 catagccaaa gacgaagaaa acgcccaaaa attgaaagag caaaaagcag ctagagaggc
     3001 agagcaaaaa agatgggaca acctaccttt ctacgccaaa gacaaattca gtgatttaat
     3061 ttgcattgaa agccgagaaa cgcttgaaga taaattcttt gcgatctctt gtatgttcga
     3121 tgccctaaaa gccgtaccta atctattaga aataggcttg cgtgaagaag gcaaagacag
     3181 tgttatagac cgattagccg aaatgagcaa actctattta ctgtttgtag atgagcaatt
     3241 ttcactactg gcaaacgaaa ttcaaagcgg taaatatggc aagttagacc taaacggctc
     3301 acagaataag ggggatttat gctaacgcac cgcattacac tccctgacgg cacagaaatt
     3361 gaattttttg cagaaaccga caaagaaaca tttgcagaaa ttcaaaggga cttagagggc
     3421 ttgaaattgc caacctttgc cgagtttgtt gcccaagagc ggaaaaaaca ccgagcaaaa
     3481 caagcggtca aaaaagcccg aaaaattgca aaattagcaa gacggaaaaa ccgctagcac
     3541 ctatcaaaaa gacttattat tgcagaaaat cacgctttaa taaaaacgac ctataaagca
     3601 atccgcaaga aatggttaag tttaactgaa aatatgagcg gacaggttca gcgggtagcg
     3661 tgcgatagat tcgcaataat ggaaaccgcc ttgcagttag cccaacattt aacaggctgg
     3721 acagaggaag agaacagcca agcgatttta aaaaacttcc tagactggaa agaaactttc
     3781 ggcgaaaaaa caagagaaga aactaaaata gtagaaacct tgctagattg gataaatgaa
     3841 aatgaggcga gttttatcga gtacccattc aaccaagagc aaagaacacc gcctaaagtt
     3901 gccggctata gaatacttgc gaataacagc actaaaacaa atgagtactt tttcatttac
     3961 cctaagcaat ttaaagaaac gctggcagaa tttccgctat tgatggcttg caccaagtta
     4021 cacgaggcag ggattttaca taagccacca cgcccagaaa aaggctatga atttcagtac
     4081 acaatagccc ctaaaataac aggagggagc aaaaaaagag cttataaaat cgtaccgata
     4141 gcattggaag aagaaaacga gtaattacag caaaagcaag ag
//
LOCUS       DANLVT010000160         4176 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.160, whole genome shotgun sequence.
ACCESSION   DANLVT010000160 DANLVT010000000
VERSION     DANLVT010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4176)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4176)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4176
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.160"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            101..742
                     /gene="sodA"
                     /locus_tag="PXC99_002360"
     CDS             101..742
                     /gene="sodA"
                     /locus_tag="PXC99_002360"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Mn]"
                     /protein_id="HDL5418765.1"
                     /translation="MAYTLPELGYAYDALEPHFDAKTMEIHHSKHHQAYINNANAALE
                     AHPELLEKCPGALIKDLSQVPAEKRIAVRNNVGGHVNHTLFWKGLKTGTTLQGALKEA
                     IERDFGSVEAFQSEFEKAATTRVGSGWAWLVLEEGKLAVVSTANQDNPLMGKEVAGVS
                     GYPILVLDVWEHAYYLNYQNRRPDFIKAFWNVVNWDEAARRFEEKVATCGCAK"
     gene            complement(805..1929)
                     /gene="alr"
                     /locus_tag="PXC99_002361"
     CDS             complement(805..1929)
                     /gene="alr"
                     /locus_tag="PXC99_002361"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HDL5418766.1"
                     /translation="MKPATATIDSQALRHNIRLIKSFAPQQKLLAMIKANAYGQGLLP
                     AAGTLADMVDGFGVARLREALEIQETGYTGKIVLVEGFFDREELLKTLSRKFDTVIHN
                     LEQLELLEQVAKEWQAEQQKGFWTRKAKIYFPINIWLKIDTGMHRLGIHPEQVDHFVE
                     RLKNCALVNSISFVSHFSRADELDCGYTEKQIAVFEQATQKYQDHDRSISASSGILYW
                     KQAHYDWVRPGIIMHGISPHYTPITDLGFKPVMTLSSSLIAVRTHKAGEPVGYGGAWV
                     SPKDTKLGVTAMGYGDGYPRNAPEGTPVLINGRIVPIVGRVSMDMLTVDLGAESQDKV
                     GDKAIFWGEQLLIEDVAKHIGVISYELITKLTPRVIFEYK"
     gene            2059..4020
                     /gene="recD"
                     /locus_tag="PXC99_002362"
     CDS             2059..4020
                     /gene="recD"
                     /locus_tag="PXC99_002362"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit alpha"
                     /protein_id="HDL5418767.1"
                     /translation="MLNLLLELKQEKAISDLNYQFARFIDNKQKPYGYSPLEQDLAVL
                     AAALVSYQVGLGHTALRLENLSLSSLFELNSKPQTYHLLEQILQKIEQIPPLEWQSVL
                     KNHIAFSYSPETIKPMLFQNSLLYFYRYWQAEHRIAGYLQQAVDFSEKFANTELNQSI
                     LNQLFTGKAQTIDWQKIAVATALEKQFSLISGGPGTGKTTTVVKLLLGLQLKQQALQK
                     PYLQIALAAPTGKAAARMKESLESKLAEEKGLSEELKRSIPTEAVTIHRLLGARPLTE
                     KTKYHTKNPWHYDLVVLDEASMIDLSMMEKVVQALKPNSRLIMLGDKDQLASVEAGSI
                     MGELGSFIDNGYSQSHCDYLKAVTDYQIEAGNALPIGDCLSHLKHSYRFGEKAWIGEL
                     ANAVNDQKINLSWEIFDKYKNSDKLENFCYPETKETTDKSSWIEKSVQMVVDKAVELY
                     RDYLQAVQKREKNPDSVSVKAIFEKFQKVRILSALRVSELGVERLNMAIAEGLRKASL
                     VKFNHSRDRYIGKPILMTENMPINSIASGDVGIILPDENGESRVYFDSLQENREHHSL
                     PLGRVSNYEAAYIMTVHKSQGSEFEHTVLVLPHSISPVLTKELIYTAITRAKDKFTLF
                     GSEKVWKYSVGAKTERQSGLKEQIRGKFS"
BASE COUNT         1298 a          807 c          894 g         1177 t
ORIGIN      
        1 ttctagatca aaaaaatgtg cattttttgt gtgtttcttg ataaaatgta ctcggagttt
       61 aactctgatt aacctattta ctatttgaga ggaattaact atggcatata cattaccaga
      121 attaggctac gcttatgatg cgttagagcc acatttcgat gctaaaacaa tggaaatcca
      181 ccattctaaa catcaccaag cttacatcaa caatgcaaat gcagcattag aagctcaccc
      241 tgaattatta gaaaaatgtc cgggtgcatt aatcaaagat ttgagccaag tgcctgcaga
      301 aaaacgtatt gcagtgcgta acaacgtagg tggtcatgta aaccacactt tattctggaa
      361 aggtttaaaa acaggcacta ccttacaagg tgcattaaaa gaagcgattg agcgtgattt
      421 cggttcagtt gaagctttcc aatcagaatt tgaaaaagca gcgactactc gtgttggttc
      481 aggctgggcg tggttagtat tagaagaggg taaattagcc gttgtttcaa ccgctaacca
      541 ggacaaccca ctaatgggta aagaagtggc aggcgtttca ggctatccga ttttagtctt
      601 agacgtttgg gaacacgctt actacttaaa ctaccaaaac cgccgtccgg atttcattaa
      661 agcattctgg aacgttgtaa actgggacga agccgctcgc cgttttgaag aaaaagtagc
      721 aacctgcggt tgtgcgaaat aatattttcg atcttgaata agatacaagc ggtaaaattt
      781 gttgaaaatt ttaccgcttg ttgtctattt atattcaaaa atcacacgag gagtgagttt
      841 agtaatcagc tcatagctaa tcacgccaat gtgtttcgcc acatcttcaa ttaatagttg
      901 ctctccccaa aaaatggctt tatcgcccac tttatcttgg ctctctgcac ctaaatcgac
      961 cgtcagcata tccatcgaaa ctcgaccgac aatcggcact attctaccgt taatcaacac
     1021 aggggtacct tcaggagcat tgcgagggta gccatcgccg tagcccattg cagtcacgcc
     1081 gagtttggta tctttagggc ttacccaagc accaccatag cctacaggct cgccggcttt
     1141 atgggtacgc acagcgatca gggaagagga gagcgtcatt accggcttaa aacctaaatc
     1201 ggtaatcggc gtatagtggg gagaaatgcc gtgcataata atacccgggc gaacccaatc
     1261 ataatgagcc tgtttccaat aaagaatacc gcttgaggcg gaaatactgc ggtcgtgatc
     1321 ctgatatttt tgcgtagctt gctcaaacac cgcaatttgt ttttcggtat agccacaatc
     1381 gagttcatcg gcacggctaa aatgactcac aaagctgatt gaattgacca aggcacaatt
     1441 tttcaaacgt tcaacaaagt gatcgacttg ctccgggtga atgcctaagc ggtgcattcc
     1501 ggtgtcgatt tttagccaaa tgttaatcgg gaagtagatt ttcgctttac gagtccaaaa
     1561 gcctttttgt tgctctgcct gccattcttt tgctacttgc tcgagtaatt ccagttgttc
     1621 gaggttatga atgacggtat caaacttgcg ggaaagggtt ttgagtagct cttctcggtc
     1681 aaaaaaacct tcaactaaca caattttgcc tgtgtatccg gtttcttgaa tttctaaggc
     1741 ttcacgcaaa cgggcaactc caaagccatc aaccatatct gctaatgtgc cggcagccgg
     1801 caataagcct tgcccgtaag cattggcttt gatcatcgcc aataattttt gctgtggagc
     1861 gaaagatttg atcaggcgaa tattatggcg gagggcttga ctatcaatgg ttgctgttgc
     1921 tggtttcata cttatctaca tagttaaaat cacaagaaag gctaaattat acgcctaaaa
     1981 taaaaaatcc cttagaaaat aatgcaaaaa agattagtat tatcacttaa tgttaggtgg
     2041 tcgatttaag gtttgattat gctgaattta ttattggaac ttaaacaaga aaaggcgatt
     2101 tctgacttaa attatcaatt tgcccgtttt attgataata agcagaaacc ctatgggtat
     2161 tcgcctttgg agcaagattt agctgtgtta gccgctgcgt tggtttctta ccaagtggga
     2221 cttgggcata cggcattacg tttggaaaat ctcagtcttt cttctctttt tgaattaaat
     2281 agcaagccac aaacttatca tttgctcgaa caaattttgc aaaaaattga gcaaattcca
     2341 ccgcttgaat ggcagagtgt gctgaaaaat catatcgctt ttagctattc tcccgaaaca
     2401 attaaaccga tgttattcca aaacagcttg ctctattttt atcgctactg gcaagcggag
     2461 catcgcattg ccggttattt acaacaagcg gttgattttt cggaaaaatt tgcaaatacc
     2521 gaattaaacc aaagcattct caaccaacta ttcactggga aagctcaaac tatcgactgg
     2581 caaaagattg ccgttgcaac agcattagaa aagcagttta gcttaatttc aggtgggccg
     2641 ggaaccggaa aaacaactac ggtagtaaaa ttattactcg ggctgcaatt aaaacagcaa
     2701 gcactacaga aaccatattt gcaaatcgct ctggctgcac caaccggaaa agcagcagca
     2761 agaatgaaag agtcgctgga aagcaagttg gcggaagaaa aggggttatc tgaggagtta
     2821 aaacgctcta ttccaactga agcagtgact attcatcgct tgcttggtgc gagaccatta
     2881 actgagaaaa ccaaatatca taccaaaaat ccgtggcact atgatttggt cgtattagat
     2941 gaggcttcaa tgattgattt atcaatgatg gagaaagttg ttcaagcgct caaaccaaac
     3001 tctcgcttga taatgctggg agataaagat cagcttgctt ctgtggaagc tggttcaatt
     3061 atgggggaac ttggctcttt tattgataat ggttatagcc aatcccattg cgattactta
     3121 aaagccgtta ccgactacca aattgaagcc ggtaatgcgt tgccgattgg tgattgttta
     3181 tctcacttaa aacatagcta tcgatttggc gaaaaagcct ggattggaga gcttgcaaat
     3241 gcagtaaatg atcaaaaaat taacctttcg tgggagattt tcgacaaata taaaaacagt
     3301 gataagttag aaaatttctg ttatccggaa acgaaagaga caacggataa atcaagctgg
     3361 attgaaaaaa gtgtgcaaat ggtggtggat aaagcggttg aactttatcg tgattattta
     3421 caagcggttc aaaaacggga gaaaaatcca gattcagtga gtgtgaaagc gatttttgag
     3481 aaatttcaaa aagtccgaat tttatcagcc ttaagggtaa gtgaactggg ggttgaacgt
     3541 cttaatatgg cgattgcgga aggcttgcgg aaagctagct tagtgaaatt taatcatagc
     3601 cgagaccgct atatcggaaa accgatttta atgacagaaa atatgccgat aaatagcata
     3661 gccagcggtg atgtcggcat cattttgccg gacgaaaatg gagaaagccg agtttatttt
     3721 gattccttac aggaaaatag agaacaccat agtttgcctc taggtagggt ttcaaattat
     3781 gaagcagctt atattatgac tgtgcataaa tcgcaaggtt ctgaatttga acatacggta
     3841 ttggtgttgc cccattcgat ttccccggtg ctgacgaaag agttgattta caccgcaatc
     3901 acaagggcaa aagataaatt taccttattt ggtagcgaaa aagtttggaa atacagtgtt
     3961 ggtgccaaaa ccgaaagaca aagtgggcta aaagaacaaa taagaggcaa gtttagctaa
     4021 attaatactc gttttgccgt aaaaatacgc aagcggtcat ttttttcaaa ttttttacaa
     4081 aaaccgcttg cgttgttttt gtttttccct ataatacgca gcacacaacg acgcactgtt
     4141 gtgaacgatt taaaattgat ttccagtgcg tcgttt
//
LOCUS       DANLVT010000161         4172 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.161, whole genome shotgun sequence.
ACCESSION   DANLVT010000161 DANLVT010000000
VERSION     DANLVT010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4172)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4172)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4172
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.161"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..1780)
                     /locus_tag="PXC99_002363"
     CDS             complement(<1..1780)
                     /locus_tag="PXC99_002363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL5418768.1"
                     /translation="MKKKQQYRKSTINNTNASQQNSGEVLNSVNYQTLLEDYLNKISF
                     SNRQFIDELKTEHNKKLKELENKVSSLEQTNHVQQQDISRLNILLEQKNIEENRNLER
                     MISYQLGYALINACKSFSGFISLPSELLKIRKLAKDKKQQKLLPSSPVANTPKQQTAL
                     VTSAPARSQSIDLTRGLTLLDPISELCWADAFTGYPLVRKSYADHIAGSTCKFAFFES
                     AWQANKGSWIYAFTSPGLKHNNAQALLDAIQKLKDKSIPIIFWNKEDPMHYEMFKPIA
                     EKVDYVFTTDQLVVDKYKKELGHSNIWALPFAAPIKVTNPIGRFSLDTETVCFAGTYY
                     AQNHENRKKQMDMLLPALLAYNGCIYDRASKDTSGKYAYPEQYTHLIREGVNFNEIVK
                     LYKKFKVFLNVNTITQSTTMMSRRVYELLASGTPVVSTPSKAITAQFPGIVITVNNEK
                     EAELAVHKLLTDSYYWHKQSMLGIREVMSKHTYENRWEFACSVINNEPIKEKTPSVRI
                     IAVYHNYLDLAIYIDSLIHQNNVDIKEVVLLISYSLVLDKELLDGYSDKVKVVTLSEF
                     NLKNYLDDEVSYTYFTDDNVLNYRNSI"
     gene            complement(1784..3055)
                     /gene="wecC"
                     /locus_tag="PXC99_002364"
     CDS             complement(1784..3055)
                     /gene="wecC"
                     /locus_tag="PXC99_002364"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HDL5418769.1"
                     /translation="MSNFNTISVVGLGYIGLPTATVFAQHGLNVIGVDVNQHAVDHIN
                     QGKIHIVEPDLDVAVHQCVSSGKLKATLTPEPAEAFLIAVPTPFKGEDYEPDLSYIQA
                     ACKAIAPVLEKGNLVILESTSPVGATEQMAEWLAEYRPELSFPQQAGEDSDIRIAHCP
                     ERVLPGQVMHELIENDRIVGGMTNKCSVQAVNLYKTFVKGDCIVTNARTAEMCKLTEN
                     SFRDVNIAFANELSIICDRLDINVWELIALANRHPRVNILQPGCGVGGHCIAVDPWFI
                     VNKTPDLAKIIRTAREVNDHKPEWVISKMNEAVIYALQKTGKSIDQIKIACLGLAFKP
                     DIDDLRESPALKITEKLAEKYPNQVFAVEPNVEELPKKLANKNISLISVDEALEVADV
                     VVVLVDHSEFKLVKPVFLNDICVVDTKGIWR"
     gene            complement(3070..4140)
                     /gene="wecB"
                     /locus_tag="PXC99_002365"
     CDS             complement(3070..4140)
                     /gene="wecB"
                     /locus_tag="PXC99_002365"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HDL5418770.1"
                     /translation="MAPLVEGFKKSGLNFKVCVTAQHRQMLDQVLELFEITPDYDLDI
                     MSNKQTLSTVTSAILEKIQPVIAEYKPTTIFVHGDTATTLASSLAAYYNQIDIAHIEA
                     GLRTHNIYSPWPEEGNRKLTAALAKYHFAPTQSTKKNLLNENIAEGTIYVTGNTVIDA
                     LFLACKKLDENIDLLSSLQEKFSYIKSKRTILITGHRRENFGNGFENICKAVSTLASD
                     FPDVQFIYPVHLNPNVREPVNRLLADKSNVHLIEPCDYLSFVYLMRESYLILTDSGGI
                     QEEAPSLGKPVLVMRDTTERPEAVEAGTVKLVGTAQSEIIKQVTELLNDQAAYTKMSE
                     AHNPYGDGTAVKQILSVFQSKQ"
BASE COUNT         1256 a          780 c          742 g         1394 t
ORIGIN      
        1 aaatagaatt acgataattt aggacattat catcggtgaa ataagtgtaa gaaacttcat
       61 catctaaata gtttttcaga ttaaactcag aaagagtaac tactttcact ttatcggaat
      121 aaccatctaa taattcttta tctaaaacaa gtgaatatga aataagtaat acaacctctt
      181 taatatcaac attattttga tgaattagag aatctatata gatagctaaa tctagataat
      241 tatgataaac cgcgataatt cgaacactag gtgttttttc ctttattggt tcattattga
      301 ttacactaca cgcaaattcc caacgatttt cataagtatg ttttgacatt acttcacgta
      361 tgcccagcat ggactgctta tgccaataat agctatctgt cagtaattta tggacagcaa
      421 gctcagcttc tttctcatta tttacagtaa taacaatgcc agggaattgt gccgtaatag
      481 ctttagatgg cgtagataca acaggtgtgc cgctagctag aagttcatac acacgtcttg
      541 acatcattgt ggttgattga gtgatggtat taacatttaa aaatacttta aatttcttat
      601 acaacttaac tatctcattg aaatttaccc cttctcggat aagatgagtg tattgttcag
      661 gataagcata tttgccactt gtatctttag atgctctatc ataaatacag ccgttgtaag
      721 ccaataatgc aggtaacaac atatccatct gttttttacg attttcatga ttttgagcat
      781 aatatgttcc agcaaaacaa actgtttctg tatcaagaga aaatctgcca attggattgg
      841 ttactttaat tggggcagca aaaggcaaag cccaaatatt tgaatgccca agttcttttt
      901 tatatttatc tacaaccaat tgatctgttg taaaaacata atctactttt tctgcgattg
      961 gcttaaacat ctcataatgc attggatctt ctttattcca aaaaatgata ggaatgcttt
     1021 tatcttttag tttctgaatt gcatctaaca atgcttgagc attattatgt tttaagcctg
     1081 gtgaagtaaa agcatagatc catgaccctt tatttgcctg ccaagcactt tcaaaaaaag
     1141 caaatttaca cgtgctgcca gcaatatgat cagcataaga ttttctaact aaaggatacc
     1201 ctgtaaaggc atctgcccag cataattcag aaataggatc cagtagtgtc aatcctcttg
     1261 tcaagtcaat agattgagat cgggcaggtg cacttgtaac taatgcagtc tgttgctttg
     1321 gtgtatttgc aacaggggaa gatggcaata atttctgctg tttcttatcc ttagctaact
     1381 tcctgatttt taataattct gaaggcaagg atataaaacc actaaatgat ttacaagcgt
     1441 ttattaaagc atatcctaac tgataagaaa tcattctttc aagatttcta ttttcttcaa
     1501 tgttcttttg ctctaacaaa atatttaatc tggatatgtc ttgctgttga acatgattag
     1561 tttgctcaag gctgcttact ttattttcta gctccttgag ctttttatta tgctcagttt
     1621 tcagctcatc tataaactgc cgattactaa aactaatttt atttaaataa tcttccagta
     1681 atgtttgata attgacagaa tttaatactt cgcctgaatt ttgttgtgat gcattagtat
     1741 tgttaatagt ggatttacga tattgctgtt tctttttcat cacttatctc caaattcctt
     1801 tagtatccac cacacaaata tcattcaaaa acacaggttt gactagttta aattcgctat
     1861 gatccaccaa aacaactaca acatcagcta cttccagagc ttcatcaaca gaaatcaaag
     1921 aaatgttctt gttagccaat tttttcggta gctcttcaac attcggctca actgcaaata
     1981 cttgatttgg atacttttcc gccaattttt cagtaatttt taatgccgga ctttcacgca
     2041 aatcgtcaat atcaggcttg aatgccaacc ctaaacaagc aattttgatt tgatcgatag
     2101 atttacctgt tttttgtaag gcataaatta ccgcttcatt catctttgag ataacccatt
     2161 caggtttatg atcgtttacc tcacgagcag tgcggataat ttttgccaag tcaggagttt
     2221 tattcacaat aaaccaagga tctacagcaa tgcagtgtcc acctacacca caacccggtt
     2281 gtaagatatt gactcgaggg tgtctgttag ccaaagcaat tagttcccat acattaatat
     2341 ctaggcgatc acaaataata gaaagctcat ttgcaaaagc gatattgaca tcacggaaac
     2401 tattttcggt taatttacac atttctgcgg tacgggcatt ggtaactata cagtcgcctt
     2461 ttacaaaagt tttgtataaa ttgaccgctt gcacagagca tttatttgtc ataccaccca
     2521 caatacggtc gttttcaatc aattcatgca tcacttgtcc tggtagaact cgttctgggc
     2581 aatgggcgat acgaatatca gaatcttcac ctgcttgctg agggaagctt agctctggac
     2641 ggtactcggc aagccactca gccatctgtt ctgttgcacc aaccggagag gttgattcta
     2701 aaatgactaa attacctttt tccagcacag gtgcaattgc tttgcaagca gcttgaatat
     2761 aacttaaatc aggctcataa tcctcgcctt taaaaggcgt tggtacagca attaaaaatg
     2821 cttctgctgg ttcaggtgtc agtgtggctt ttaattttcc gctagataca cattggtgaa
     2881 cagcaacatc taaatcaggc tcgacaatgt gaattttccc ttgattgata tggtctacgg
     2941 cgtgctgatt aacatctacg ccaattacat ttagaccgtg ttgggcaaat acagtggcgg
     3001 ttggtaagcc aatatagcct aagcctacta ctgaaatggt attaaagttc gacatacatt
     3061 tatcccttat tattgttttg attgaaatac tgagagaatt tgtttcacag ctgtgccatc
     3121 gccataaggg ttgtgagcct cagacatttt tgtataagca gcttgatcat tgagtaactc
     3181 agtaacttgt ttaataattt cagattgtgc agttccaaca agttttactg ttccggcttc
     3241 tacagcttcc ggtctttctg ttgtgtctct cattactaat accggttttc ctaatgatgg
     3301 ggcttcttct tgaatacctc cggagtcagt taagataagg taagactctc tcattaaata
     3361 aacaaaggag agatagtcgc aaggctcaat gagatgcaca ttggatttat ccgctaatag
     3421 gcgattgacc ggttctctta catttgggtt gaggtgtacg gggtagataa attgaacgtc
     3481 agggaaatca gacgctaatg ttgaaacggc tttacagatg ttctcaaaac cattaccgaa
     3541 attttcgcgg cgatgtccgg tgatcaaaat agtacgctta ctttttatat aagaaaattt
     3601 ctcttgtagc gagcttaata aatcaatatt ttcatctaat tttttgcaag cgaggaataa
     3661 ggcatcaatt accgtattac ccgttacata aatggtgccc tcagcaatat tttcgttgag
     3721 tagatttttc ttggtgcttt gtgttggtgc gaaatggtat tttgccaaag cagctgttaa
     3781 tttgcgattg ccttcttccg gccaaggaga gtagatatta tgcgttctta gacctgcctc
     3841 aatatgagcg atatcaattt ggttgtaata ggctgctaat gaagaggcaa gagtggttgc
     3901 tgtatcgcca tgaacaaaaa tagtagttgg tttgtattcg gcaataacag gttgaatttt
     3961 ttctaaaata gcagaagtta cagtagaaag tgtttgctta ttgctcataa tatccaggtc
     4021 ataatctgga gtaatttcga ataattctaa aacttggtcc agcatttggc ggtgctgagc
     4081 agtaacacag actttaaaat ttagaccgct tttcttaaag ccctcaacta agggagccat
     4141 tttgattgcc tcaggacgag taccgaagac ga
//
LOCUS       DANLVT010000162         4170 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.162, whole genome shotgun sequence.
ACCESSION   DANLVT010000162 DANLVT010000000
VERSION     DANLVT010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4170)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4170)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4170
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.162"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..1081)
                     /locus_tag="PXC99_002366"
     CDS             complement(<1..1081)
                     /locus_tag="PXC99_002366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5418771.1"
                     /translation="MGIMSKSISIFNHKGGIAKTTTAFNVGWSLANQGYQVLLVDLDS
                     QCNLTGLVLGYDQCKEDSDLALFYNNRHHLTMEGIVEALINGQSPDNYLSGNVGQITQ
                     TLNPNLFLLPGHLNVSELDSQISVSLKIAAGVPATRNIPGNLPTLIKKVAEQNNIDYI
                     LYDLSPNVGGLNEVILMSSDYFIVPTSPDFFCWQAVGSLAKNIRKWHNELKAFKELNG
                     FNQSSYAIKNKPQFLGTIQQRYRPRKGQPAKSFEKWIERIRNEVITNFVPVLKTIDCA
                     IDDTAIYAALKSTNSDLEPFDLAHIADFNSLIAISQELRVPVFSLTKEQIKNSGQFGH
                     ALNTMDESKENFDQEFQSLAERIIQL"
     gene            complement(1146..1577)
                     /locus_tag="PXC99_002367"
     CDS             complement(1146..1577)
                     /locus_tag="PXC99_002367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418772.1"
                     /translation="MKKMAIVALSAFFSMNAFANNNVVYSCTTTDNQTLKVTKEGGNY
                     VYSHGNTTFKNPVKEALKNPASEIAGGSQFTTISLELRNAGKSYIVGHIEADPKSPFE
                     ASVQIQDIKTGNDITSFECRSDKPIRHNFDRKLMRKSGFAA"
     gene            complement(1581..3683)
                     /locus_tag="PXC99_002368"
     CDS             complement(1581..3683)
                     /locus_tag="PXC99_002368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HDL5418773.1"
                     /translation="MKKAKSLKFLTACIMLTTMSGYANSNTVNVGNSISNFIENTTGY
                     RTGNLGVSGNNALTEYYPVLSDYMHYSIGGGSAISAPASRGRPNQYGIGIGWKSNLTC
                     GNFDIKLSIKNQLNGITEGFKDLYGNIIESATGAVASLPAMIIQRANPQLYDILSNGL
                     YQGKLDFNNFKTSCEAMSNQLADLAMDSKLAKMAGLHRAAEIAETEPDAMAAKKKMDK
                     KDAEKGIPWVGGEQRGGKNQKPMAIVADIVGAGYNLALGRGPLEKGDIPIASCDGMLC
                     TEWKNPSEAAAYASEVIGETFLDACETCEQSSSGAKAGKGIAHFIEQTTIEKATKLEA
                     ALNHLDSLTPEQLNSLSTSTVSVTKGVLEAIAASPDAALLGARLSQELAISKEMEKLL
                     LIRRAMLAGMREPNVIKSSLVEEAERNLKLLDREIEQVKLEMELQRSINGNTALAAIT
                     QQMNEQALAIDDNAMGDGNRRFANLSNQAGANNLNTSGIANSAQNAVGDRYIAIPKSD
                     GSGMSDFYGAYKASPTNIVSNVNVGSYTQIAQMNGNANEQATALIKQFEGYLSHGKWD
                     VNANRAGYGSDTYTTADGMVHRVQKGTYVSREDAERDLARRMPQFMNVARGNVGADVW
                     AKLTPQAQAALTSVSYNYGSLSKLESVQKAAAVSAQSGDMTALANSIRNLQGHNNGVN
                     ARRRNQEADYIINAPKGN"
     gene            complement(3710..3988)
                     /locus_tag="PXC99_002369"
     CDS             complement(3710..3988)
                     /locus_tag="PXC99_002369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
                     /protein_id="HDL5418774.1"
                     /translation="MQAKTFYYLPLLLLSAMASASPANKPSDVTVKVFTSESYPKVFP
                     HSGDWATHSDSFSNTENYSWALWRPYSCCKKQGQVFLGHVDWKSTHTH"
BASE COUNT         1157 a          824 c          797 g         1392 t
ORIGIN      
        1 tcagttgtat aattcgttct gctaatgatt gaaattcttg gtcaaaattt tctttacttt
       61 catccattgt attcaaagca tgtccaaatt gacctgagtt tttaatttgc tcttttgtta
      121 aggaaaatac gggaactcgt agctcttggc taatagcaat caacgaatta aagtcggcta
      181 tgtgagccaa atcaaatggc tctaagtcag aattcgttga tttaagagca gcataaatag
      241 ctgtatcatc aatagcacaa tcaatagttt ttaataccgg cacaaaattc gtaatgactt
      301 catttctaat tcgctcaatc catttttcaa atgatttggc cggttgccct tttcttggtc
      361 gataacgttg ctgaatagta cctaaaaatt gtggcttatt tttaattgca taagatgatt
      421 ggttaaaacc attaagttct ttaaatgctt ttaactcatt atgccatttg cgaatatttt
      481 tagcgagcga accaactgct tgccagcaga aaaaatcagg tgatgtaggt acaataaagt
      541 aatcactaga cattaggata acttcattta atccacccac atttggacta agatcataga
      601 gtatgtaatc aatattgttt tgttcagcta ctttcttaat taaagtcgga agattgccgg
      661 gtatatttct tgttgctgga acaccggcag caatttttaa tgatacacta atttgcgaat
      721 caagctcgga aacattaagg tgaccaggta acaagaacag atttggattc agggtttgag
      781 tgatttggcc aacatttcca ctaaggtagt tatcagggct ttgtccgttt atcagtgctt
      841 caacaatacc ttccatagtc aaatgatgtc tattattgta aaaaagcgct aaatcactat
      901 cttctttgca ttgatcgtag ccaagtacca gaccggttag gttacattgt gaatccaaat
      961 cgactaacaa tacttgatag ccttgatttg ctaaactcca accaacatta aatgcagttg
     1021 tagttttagc aatacctcct ttatgattaa aaatactgat agacttactc ataataccca
     1081 taattctatg aaataattaa cccaccgaac tcatttgaga atggtgggtt aatgctttgc
     1141 tttagctagg ctgcaaatcc agattttctc atcagtttgc gatcaaagtt gtggcgaata
     1201 ggcttatcgg aacgacattc aaatgatgta atatcatttc ctgttttaat atcctgaatc
     1261 tgaacacttg cttcaaaagg tgatttaggg tctgcttcta tatgacctac aatataagat
     1321 tttcctgcat ttcttaattc gagcgagatt gttgtgaatt gtgaaccacc tgcaatctcc
     1381 gatgccggat ttttgagagc ttcttttaca ggatttttga atgtggtatt accgtgagag
     1441 tacacatagt ttcccccctc tttggtaact tttaacgttt ggttatctgt agttgtgcaa
     1501 gaatacacta cattgttatt tgcaaaagca ttcattgaga aaaatgctga taaagctaca
     1561 attgccattt ttttcatagg ttagtttcct tttggtgcgt tgataatgta atcggcttcc
     1621 tggttacgtc ttcgagcatt aacaccatta ttatgccctt gtaaatttcg gattgagtta
     1681 gctaaagccg tcatatcacc tgattgtgcg gagacggcag ccgctttttg aacactttct
     1741 agtttagata atgacccata gttgtatgat accgacgtta atgctgcttg tgcttgagga
     1801 gtcaatttag cccaaacgtc ggcaccaaca ttaccccttg caacattcat aaattgaggc
     1861 attcttcgtg ctaaatcacg ttcagcatct tcccggctta cataagtgcc tttttgaacc
     1921 cgatgaacca taccatctgc agtagtatag gtgtcagagc catatccggc acggttagca
     1981 tttacatccc atttcccgtg gcttaaatat ccttcaaact gtttgataag agccgttgct
     2041 tgttcattcg cattgccgtt catttgggca atttgggtat agctccctac attcacgtta
     2101 ctgacaatgt ttgttgggga ggctttatat gctccataaa aatcactcat gcctgagccg
     2161 tctgatttgg ggatagcaat atatctatcg ccaacggcat tttgtgcaga attagcaatg
     2221 ccactggtgt tgagattatt tgctccggct tgattgctta aattggcaaa gcgacggttt
     2281 ccatcaccca tcgcattatc atcaatagca agagcttgtt cgttcatctg ttgagtaatt
     2341 gcagctaatg ctgtattacc gttgattgaa cgttgcagtt ccatttcgag tttaacttgc
     2401 tcaatttctc tgtcaagtaa tttgaggttt ctttctgctt cttctactaa ggaagatttt
     2461 ataacatttg gctcacgcat accggctaac attgctcggc gaatcagtag caatttttcc
     2521 atttctttag aaatagctaa ttcttgcgat aaccttgcac ccagcaaggc tgcatccggc
     2581 gaagcagcaa tggcttctaa tacgcctttt gttacactga ccgttgatgt actcagtgaa
     2641 ttgagttgtt ccggcgttaa actatctaag tgattcagtg ccgcttctag ctttgtggct
     2701 ttttcaatag ttgtttgttc aataaaatgg gcgattcctt tcccggcttt agctccactt
     2761 gaactttgtt cacaagtttc acaggcatca aggaatgttt caccaatcac ttcacttgca
     2821 taggcagcag cctcgcttgg atttttccat tccgtacaaa gcataccatc acagcttgca
     2881 ataggtatat ctcctttttc taatggtcct cgtcctaaag cgaggttata tccggctcca
     2941 acaatgtcag caacgatagc cattggtttt tgatttttac caccacgttg ttcgccacct
     3001 acccaaggga tgcctttttc agcatctttt ttatccattt tcttcttggc tgccattgca
     3061 tcaggctctg tttcagcaat ttcagcggct cggtgtaatc cggccatctt tgctaattta
     3121 ctgtccattg ctaaatcagc aagttggtta gacatggctt cgcaactggt tttgaagttg
     3181 ttgaagtcaa gttttccttg atatagacca ttagaaagaa tgtcatacag ttgaggattt
     3241 gctcgttgga taatcatcgc cgggaggctg gcaactgcac cggttgctga ctcaataata
     3301 ttgccataaa gatctttaaa accttcagta ataccattaa gctggttttt aatggaaagt
     3361 ttaatatcaa agttgccaca agttaaattc gatttccagc caatgccaat cccatattga
     3421 tttggtctgc cacgggaagc tggtgcggaa atggcactac ctcctccaat ggagtagtgc
     3481 atataatcag aaaggacagg gtagtattcc gtgagagcgt tattaccaga aacgcctaga
     3541 ttaccagtcc tatagcctgt tgtattttca ataaaattac taatgctatt gccaacatta
     3601 acggtattac tatttgcgta tccgctcatg gttgtgagca ttatacaagc ggttagaaat
     3661 ttgagacttt ttgctttttt catttattta tcctaatagt gctgataatt taatgagtat
     3721 gtgtactttt ccagtccaca tgacctaaaa aaacttgccc ttgtttttta cagcaagaat
     3781 agggcctcca taatgcccag ctgtaattct cagtattgga gaaactatct gaatgggtag
     3841 cccaatcacc actgtgcgga aagactttag ggtaggattc ggaagtaaat accttaactg
     3901 ttacatctga gggtttatta gcaggactag cacttgccat agctgaaagc agtagtagtg
     3961 gtaaatagta aaatgtctta gcttgcataa atgctccaca aatagagtaa ttcacgttta
     4021 ccttaaaaga tgatttggtt agaagaaatc ggaaattgtt ttttggtttt ggagagtttt
     4081 tgttagtata taagttaatg taacaaggga gagtggatgt atgagcaata gaatacctaa
     4141 agcctgttat gcttacccaa aatcgccgaa
//
LOCUS       DANLVT010000163         4161 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.163, whole genome shotgun sequence.
ACCESSION   DANLVT010000163 DANLVT010000000
VERSION     DANLVT010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4161)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4161)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4161
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.163"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..297
                     /locus_tag="PXC99_002370"
     CDS             <1..297
                     /locus_tag="PXC99_002370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL5418775.1"
                     /translation="HSLTLLENINPDIAFVSCNSWSLEKGVTAPTEEKANLKRMLQQN
                     AKQKVLVADSSKYGKYSLFRATQLDNFTQIITDKGLPIEYSQALSSNDFKLSLV"
     gene            complement(378..548)
                     /gene="rpmG"
                     /locus_tag="PXC99_002371"
     CDS             complement(378..548)
                     /gene="rpmG"
                     /locus_tag="PXC99_002371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HDL5418776.1"
                     /translation="MAAKGAREKIRLVSTAETGHFYTTDKNKRNMPEKMEIKKFDPVV
                     RKHVIYKEAKIK"
     gene            complement(560..796)
                     /gene="rpmB"
                     /locus_tag="PXC99_002372"
     CDS             complement(560..796)
                     /gene="rpmB"
                     /locus_tag="PXC99_002372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_004997628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HDL5418777.1"
                     /translation="MSRVCQVTGKRPAVGNNRSHAMNATKRRFLPNLHTHRFWVESEN
                     RFVTLRLTAKGMRIIDKKGIDAVLAEIRARGEKI"
     gene            complement(1028..1765)
                     /gene="radC"
                     /locus_tag="PXC99_002373"
     CDS             complement(1028..1765)
                     /gene="radC"
                     /locus_tag="PXC99_002373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HDL5418778.1"
                     /translation="MEEKMNDFFDEDSQEPTMMPREKLLTQGAASLTDSELLAIFLRT
                     GTKAVPVLALAESVLMAFGSLRQLLNANIDDFCKIYGLGKTKYIQLQASKEMTKRYLA
                     QQMEFSEMIQAPYMAIMYFQTELEEEEREVFMVLFLDNQNRLIYKEKMFFGTINQTAV
                     HPREIIKRALKYNAAAIIVAHNHPSGSCLPSESDRSLTKKIEMACELVDIRFVDHIIV
                     GKGDYFSFEEEKLEMKEHSFLQISDRK"
     gene            1915..3117
                     /gene="coaBC"
                     /locus_tag="PXC99_002374"
     CDS             1915..3117
                     /gene="coaBC"
                     /locus_tag="PXC99_002374"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HDL5418779.1"
                     /translation="MLQNKKILVGISGGIAAYKTIEFIRHLKKANAEVRVVLTPAAEA
                     FVTPLTLQAISGNAVSTSLLDPQAELAMGHIELAKWADLIVIAPASADFIARLRMGMG
                     NDLLSTLCLATASPILLAPAMNQQMYKQIAVQENLSVLVNRGVQLIGPNSGFQACGDV
                     GAGRMSEPEEIYQAVLAHFSNNQDLEGLNVTITAGPTREAIDPVRYISNHSSGKMGYA
                     IANAFAERGAKVTLISGPVNLPTPKNVERINVESAVEMEQQAVKFAQKSAIFIGCAAV
                     ADYRMAAVSDQKIKKTDANDELTLKLVKNPDIIANVANLAENRPFVVGFAAETQNVAE
                     YAKSKLERKNLDMICANDVSGGQVFGQDQNALHLFWKNGEKTLPLADKSKLAESLVQE
                     IVKHYREK"
     gene            3117..3434
                     /locus_tag="PXC99_002375"
     CDS             3117..3434
                     /locus_tag="PXC99_002375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418780.1"
                     /translation="MKLLVSHFHQGEGKFPTFSAGTAVRLGSECVNYPNWFACEIDGW
                     KTFVPSHFISEDKLICDYNPTELVAAQGERVEFLELHYQWAIVKRENEIGWLPCEILR
                     VIG"
     gene            3431..3613
                     /locus_tag="PXC99_002376"
     CDS             3431..3613
                     /locus_tag="PXC99_002376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL5418781.1"
                     /translation="MKIMQLTSNQYINDIKHILLSARQKAYQAVNSAMVEAYWKIGER
                     IVQEEKNMVKDQNEKV"
     gene            3600..>4161
                     /locus_tag="PXC99_002377"
     CDS             3600..>4161
                     /locus_tag="PXC99_002377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
                     /protein_id="HDL5418782.1"
                     /translation="MKKYNIVFSADKNYLPYLEIALKSLLAHHNHLSIFILSTGDISH
                     HWIETLRPYLENRYSTLRLGYLDSNNLANFNSNGYITNSTYLRYYIEELFEHSDSPYW
                     IYLDCDLVVNGNITDPFTNLDFSFGSIAAIADPYVNKLKNHPYIYKNYFNAGVFYLNA
                     KHFSKQPFIQLTERFKENLPFGDQDIL"
BASE COUNT         1290 a          826 c          805 g         1240 t
ORIGIN      
        1 catagtttaa ctttattaga aaatattaat cctgatattg cttttgtgag ctgtaattct
       61 tggagcttag aaaaaggagt tacagcacct acagaagaga aagctaattt aaaaagaatg
      121 ctccaacaaa acgccaaaca aaaagtactg gttgccgata gcagcaaata tggaaaatac
      181 tctttatttc gtgcaactca actcgataac tttacacaaa ttatcacaga taaaggacta
      241 cctattgaat atagccaagc cttgtcaagt aatgatttta agctatcatt agtttaatca
      301 tacaagcggt cttttttcac taattttttg tatatgaaaa acccagcatt cgctgggttt
      361 taaatcttaa aacaaaatta tttaattttt gcttctttgt agataacgtg tttacgcaca
      421 actggatcaa attttttgat ttccattttt tcaggcatat tacgtttgtt tttatctgtt
      481 gtgtagaagt gaccagtttc tgctgtagaa actaaacgga ttttctcacg agcgccttta
      541 gctgccattt tttagctcct tagatttttt cgccacgagc acggatttca gctaatactg
      601 catcaatgcc ttttttatca ataatacgca tacctttcgc agttaaacgt aaggttacga
      661 aacggttttc gctctcaacc cagaaacggt gagtgtgaag gtttggtaag aaacgacgtt
      721 tagtcgcatt cattgcgtgt gagcggttgt taccaactgc tggacgcttg ccggttactt
      781 ggcaaactct tgacatttga atttctccaa taattttaag cttaaaaatg gttcgggcga
      841 tctcacaaaa ggcgttgctc aaccaacccc tccgattttg attgcctcgt caggcattaa
      901 cccgaccaca gtctatgtaa taaagactgc cgattatacc gatttcattt gttatattca
      961 agtagaattt atatgcgtat cttttactgt ttcaggagaa atgttaaagg ttacataaag
     1021 caagcggtca ttttctatca gaaatttgca aaaatgaatg ctccttcatc tctaatttct
     1081 cttcctcgaa cgaaaaatag tcccctttgc cgacaataat atgatccaca aagcgaatat
     1141 caaccaattc gcacgccatt tcgatctttt tagttaaact tctgtccgac tcactcggca
     1201 gacaagaacc tgaggggtga ttatgagcca caataatcgc cgcggcatta tattttaacg
     1261 ctcttttaat aatttctcgg gggtgaacag cagtttgatt aatggtgccg aagaacattt
     1321 tttctttata aatcaatcgg ttttggttgt ccaaaaacag caccataaaa acttcccgtt
     1381 cttcttcctc caactcggtt tggaaataca taatcgccat ataaggggct tgaatcatct
     1441 cgctaaattc catttgttga gccagatagc gtttggtcat ctctttagag gcttgtaact
     1501 gaatgtattt ggttttgcct aaaccgtaaa ttttgcaaaa atcatcaata tttgcattca
     1561 gtaattggcg taacgagcca aatgccatca acacactctc tgccaatgcc agcacaggca
     1621 cagctttcgt accagtccgt aaaaatatcg ctaataattc ggaatcggtt aatgaggctg
     1681 ccccctgtgt taataatttc tcacgcggca tcattgttgg ctcttgagaa tcttcatcaa
     1741 aaaaatcgtt cattttttcc tccatcaatt tagttaagca taaaagagcc aacctttgca
     1801 gacaaaggga tttattcaat ttttcgagca agatcgcaaa aatagtgaag ttgtgagcaa
     1861 ctccttattc cgctaaaata tgcaaaataa atccacgctt taaggatagt aaagatgtta
     1921 caaaacaaaa aaattttagt cggcatttcc ggtgggattg cagcctacaa aaccattgaa
     1981 tttatccgcc acttaaaaaa ggcaaatgcg gaagtgcgtg tagtgctaac cccagcagca
     2041 gaagcctttg taacgccttt gaccttacaa gcgatttccg gcaatgcggt ttccacttca
     2101 ctactcgacc cacaagccga actggcgatg gggcatattg agctggcaaa atgggcggat
     2161 ttaatcgtta tcgccccggc aagtgccgat tttattgctc gcctgcgtat gggaatgggc
     2221 aacgatttac tttccactct ctgccttgcg actgcaagcc cgattttgct tgcaccggca
     2281 atgaatcaac aaatgtacaa acagattgcg gtgcaagaaa atctgtctgt tttagtcaat
     2341 cgtggcgttc agctcatcgg cccgaatagt ggcttccaag cctgtggtga tgtgggggct
     2401 ggcagaatgt ctgagcctga agaaatttac caagcggtgt tggctcattt ctccaacaat
     2461 caagatttag agggcttaaa tgtaaccatt accgccggac cgactcgtga ggcgattgac
     2521 cctgtgcgtt atatcagcaa ccacagctcc ggcaaaatgg gctacgcgat tgctaatgcc
     2581 tttgccgaac gtggagcaaa ggttacgttg attagcggtc cggtgaattt accaacgccg
     2641 aaaaatgtgg aacgaattaa tgtggaatct gcggttgaga tggagcaaca agcggtcaaa
     2701 tttgcccaaa aatctgcgat ttttattggc tgtgcagcgg ttgccgatta ccgaatggcg
     2761 gcagtctctg accaaaaaat taagaaaacc gatgccaatg atgaactcac gctaaaattg
     2821 gtaaaaaacc ccgatattat cgctaacgtc gccaatcttg ccgaaaaccg cccttttgtg
     2881 gttggttttg ccgcagaaac gcaaaatgtg gcggagtacg ctaaatcgaa actcgaacgc
     2941 aaaaatctgg atatgatttg tgccaatgat gtctcaggcg gacaagtgtt cgggcaggat
     3001 caaaatgcgt tgcatttgtt ctggaaaaat ggtgaaaaaa cgcttcctct ggcggataaa
     3061 agcaaattgg cagaaagttt ggtacaggaa attgtaaaac attatcgaga aaaataatga
     3121 aattactggt tagccatttt catcaaggcg aagggaaatt tcctacattc tcagctggta
     3181 ctgccgttcg attagggagt gaatgtgtaa actacccaaa ctggtttgcc tgtgaaattg
     3241 acggttggaa aacctttgtg ccaagccatt ttattagcga agataaattg atatgcgatt
     3301 ataacccaac ggaacttgtt gcagcacaag gcgagagagt agaattcctt gaactacatt
     3361 accaatgggc aattgtcaaa agagaaaacg aaattggctg gctaccttgt gaaatcttaa
     3421 gggtaatagg atgaaaatta tgcaacttac gtcaaatcag tatatcaacg acattaaaca
     3481 tattctttta tctgctcgcc aaaaggcgta tcaagccgtg aattcggcaa tggtcgaagc
     3541 ctattggaaa atcggtgaac gaattgtgca agaagagaaa aatatggtca aagatcaaaa
     3601 tgaaaaagta taatattgta ttttcagcag ataaaaacta cctgccatat ttagagattg
     3661 ccttaaaatc actattagct catcataatc atttatctat ttttatattg agtactggcg
     3721 atatttctca ccactggata gaaacattac gcccctattt agaaaataga tattccacat
     3781 taagacttgg ctatttagat tcaaataatt tagcaaattt taactccaac ggctatatta
     3841 ctaattcaac ttacctacga tattatattg aagaactatt tgaacacagc gatagcccat
     3901 attggattta tttagattgc gatcttgtgg ttaatggaaa tattacggat ccatttacaa
     3961 acctagattt ttcttttgga agtattgctg caattgctga tccttatgta aacaaactaa
     4021 aaaatcatcc ctatatttac aaaaactatt tcaatgctgg tgtattttat ctaaatgcaa
     4081 agcattttag taagcaacca tttatacagc ttactgagag atttaaagaa aatttaccat
     4141 ttggggatca agatattctt a
//
LOCUS       DANLVT010000164         4127 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.164, whole genome shotgun sequence.
ACCESSION   DANLVT010000164 DANLVT010000000
VERSION     DANLVT010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4127)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4127)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4127
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.164"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(230..1870)
                     /gene="pgi"
                     /locus_tag="PXC99_002378"
     CDS             complement(230..1870)
                     /gene="pgi"
                     /locus_tag="PXC99_002378"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013527751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HDL5418783.1"
                     /translation="MQKINPVQTFAWNALEQHKADNLSIPQLFAEDPNRFDKYSLRFE
                     DQLLVDFSKNAINEKTLTLLRQLANECGLESAKNAMFSGKKINRTENRAVLHVALRNR
                     ANTPIAVDGKDVMPEVNAVLAKMKDFCERVISGEWKGYTGKTITDVINIGIGGSDLGP
                     YMVTEALRPYKNHLNMHFVSNVDGTHIAEVLRKVNPETTLVLVASKTFTTQETMTNAL
                     SARKWLLDSAKDESAVAKHFVALSTNAKEVEKFGIDTANMFEFWDWVGGRYSLWSAIG
                     LSIALSLGFENFEQLLAGAHAMDKHFLITPIEKNIPTTLALVGIWNNNFLGAESEAIL
                     PYDQYMHRFAAYFQQGNMESNGKFVGRDGKPVTHQTGPIIWGEPGTNGQHAFYQLIHQ
                     GTKLIPCDFIAPAQTHNPLSDHHNKLLSNFFAQTEALAFGKSKETVEKEFLDAGKTLE
                     EVAEIVPFKVFSGNKPTNSILVQKITPYSLGALIAMYEHKIFVQGVLFNIYSFDQWGV
                     ELGKQLANRILPELETDEKINSHDSSTNGLINQFKAWR"
     gene            complement(1903..2151)
                     /locus_tag="PXC99_002379"
     CDS             complement(1903..2151)
                     /locus_tag="PXC99_002379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory factor UbiK family protein"
                     /protein_id="HDL5418784.1"
                     /translation="MLTPKNLEAIAQQLHNALPQSLKNVGNDLDEKFKQILQAQLARL
                     DVVTREEFDVQSQVLLRTREKLTELEKRLDELTQRTDE"
     regulatory      2275..2319
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00522"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="PreQ1 riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="preQ1"
                     /db_xref="RFAM:RF00522"
     gene            2323..2991
                     /gene="queC"
                     /locus_tag="PXC99_002380"
     CDS             2323..2991
                     /gene="queC"
                     /locus_tag="PXC99_002380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HDL5418785.1"
                     /translation="MTHQKPKAVVIFSGGQDSTTCLFQAIAEFGKENVEVVTFQYGQR
                     HSIELEKARWISNDLGVKQTLIDTSVIKAITTNALMDNNAEIQQQGSTPNTFVDGRNA
                     LFLLYTAIYAKGQGIQTIFTGVCETDFSGYPDCRDVFVKSMNVTLNLAMDYNFNIRTP
                     LMYLTKKETWALADKLGAFDYIRDHTHTCYLGVEGGCHDCPSCVLREKGLNEYLAERE
                     VSNV"
     gene            2984..3406
                     /gene="queD"
                     /locus_tag="PXC99_002381"
     CDS             2984..3406
                     /gene="queD"
                     /locus_tag="PXC99_002381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HDL5418786.1"
                     /translation="MFKIAKEFSFDMAHMLDGHDGKCQNLHGHTYKLQVEVAGELFQE
                     GAKRGMVMDYSDLKAVVKQHILEPMDHAFIYDLQSERESQVAQLLIDLNSKVYGIPTR
                     TTAEEMAKYMFEKLEKVGLPVSLIRLWETPTSYCEYSK"
     gene            3406..4032
                     /locus_tag="PXC99_002382"
     CDS             3406..4032
                     /locus_tag="PXC99_002382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HDL5418787.1"
                     /translation="MAELISNPRFPIVEIFESLQGEGFNTGMPAIFVRFGKCNLTCPW
                     CDTNYNQFEQWTLSDILAKVRSYSAKNVIITGGEPTIQPNLSLLLEQFKKEGYFLAIE
                     TNGLKEVPAQIDYIATSPKRMYQEKYQRRCIEFANEVRIVVDGEVQGFCEQIESQIKA
                     EHYYLSPCEVEGKMNLLETITQIGLLNQRPNKPKWQLSIQTHKIVGIE"
BASE COUNT         1253 a          757 c          875 g         1242 t
ORIGIN      
        1 tgagtgaaga gtagaggtaa aatagtaagc ctttttaacc agtttattta ttgtacctat
       61 tttagaaaaa agaaaagtag aaaagagata ttaggtaaac tcatagtgca aaagaatata
      121 gaaaaaactg cttgtgtaga aatggcgctt agttcagtcc tcagctaaaa ttttagaaaa
      181 aaagcataga gattttttac ctctatgctt tttattgtat tgactatatt taacgccaag
      241 ccttgaattg gttaattaaa ccatttgtgg agctgtcgtg gctgttgatt ttttcatcgg
      301 tttcgagttc gggtaaaatg cggtttgcaa gctgtttgcc taactccacg ccccattggt
      361 cgaaactgta aatgttgaac agcacgcctt gcacgaagat tttgtgttca tacattgcaa
      421 ttaatgcccc taagctgtac ggggtgattt tttgcaccaa gatagagttg gtcggtttgt
      481 ttccgctgaa cactttaaac ggcacgattt cagctacttc ttccaacgtt ttacctgcat
      541 ctaaaaactc tttttcaact gtttcttttg atttaccgaa agctagtgct tcagtttgag
      601 caaagaagtt agaaagcagt ttgttgtgat gatcgcttaa cggattgtga gtttgtgccg
      661 gtgcgataaa atcacaagga attaattttg tgccttgatg aatgagttga tagaatgcgt
      721 gctgaccgtt agttcccggt tcgccccaaa taatcggacc tgtttggtga gtaaccggtt
      781 tgccgtcacg ccccacaaat ttaccgtttg attccatatt gccttgttgg aaataagccg
      841 caaagcggtg catatattgg tcgtaaggta aaatcgcttc tgattcagca cctaagaaat
      901 tgttattcca aatgccgact aaagctaacg tagttggaat gtttttctca atcggcgtga
      961 ttaagaaatg cttatccatt gcgtgagcac cagcaagtag ctgctcgaag ttctcaaaac
     1021 ctaatgaaag ggcaatcgaa agcccgatgg cagaccataa tgagtaacga ccgccaaccc
     1081 aatcccagaa ttcaaacata ttagcggtat caataccgaa tttttccact tctttggcat
     1141 tggttgaaag tgccacgaaa tgttttgcta ccgcagattc atctttggca gaatcaagta
     1201 gccatttgcg agctgaaagg gcattggtca tcgtttcttg agtggtaaag gtttttgaag
     1261 ccactaacac taacgtggtt tcaggattaa ctttacgcaa cacttcagca atatgcgtgc
     1321 cgtccacgtt agacacaaag tgcatattaa ggtgattttt ataagggcgt aatgcctctg
     1381 ttaccatata aggacctaga tccgagccac caataccgat attgatcaca tcagtaatcg
     1441 ttttgccggt atagcctttc cattcgccgg aaataacacg ctcgcagaaa tctttcattt
     1501 tcgctaacac ggcattcact tccggcatta catctttgcc atcgactgcg attggtgtat
     1561 tggcacggtt acgcagtgca acgtgcaata cggcacggtt ttcagtgcgg ttgatttttt
     1621 tgccggagaa catcgcattt tttgctgatt ccaaaccaca ttcatttgcc agttggcgaa
     1681 gtaaggttaa ggttttttcg ttgatcgcat tttttgaaaa atcgactaat aattgatctt
     1741 caaaacggag ggaatatttg tcgaaacggt ttggatcttc ggcaaaaagt tgaggaatag
     1801 aaaggttgtc tgctttatgt tgctctaagg cattccaagc aaaagtttgc acagggttaa
     1861 ttttttgcat ctgagtttcc ttatactaaa ttaaaaaatc gattattcat ctgttctttg
     1921 agtcagttca tcaagacgtt tttctaattc ggttaatttt tcacgagtgc ggagtaacac
     1981 ttgagattga acatcaaatt cttcacgagt gacaacatca agacgggcta attgggcttg
     2041 aaggatttgc ttaaattttt catctagatc attaccgaca ttttttaagc tttgcggtaa
     2101 ggcgttatgg agttgttgag caatcgcttc taagttcttc ggcgtgagca tatttaaatt
     2161 ccttactata aatgagtatc ccaattttat tgaattttgg gtttaagaga aagcaaattc
     2221 tttgtaaaat atcacctttc gcaaaataca agcaaaaaag accgcttgta ttttttattt
     2281 gtggttcgta aacctcccac acaaaaaaac taaggacaca aaatgactca tcaaaaacca
     2341 aaagccgttg tgattttttc cggcggtcaa gactctacca cttgtttatt ccaagctatt
     2401 gctgaatttg gcaaagaaaa tgtggaagtc gttacctttc aatatgggca acgccattcg
     2461 attgaacttg aaaaagcacg ctggatttct aacgatttag gcgtcaaaca aacgctgatt
     2521 gatacttcgg tgattaaagc gattactacc aatgcgttaa tggataataa tgctgaaatt
     2581 caacaacaag gcagcacacc caataccttt gtggatgggc gtaatgcctt atttctgctt
     2641 tataccgcca tttatgccaa agggcagggc attcaaacta tttttaccgg cgtgtgtgag
     2701 accgatttta gtggttaccc tgattgccga gatgtatttg taaaatcaat gaatgtaacg
     2761 ctaaatttag cgatggacta taatttcaac attcgcacgc cattgatgta tttaactaaa
     2821 aaagaaactt gggcattagc agataagctg ggtgcttttg attatattcg agaccatacc
     2881 cacacctgtt atttaggcgt tgaaggtggt tgccacgact gcccgagttg cgtattgcga
     2941 gaaaaaggct tgaatgaata tttagcagaa agggaggtaa gcaatgttta aaattgctaa
     3001 agaatttagt tttgatatgg ctcatatgct agatggacac gatggcaaat gccaaaactt
     3061 acacggacac acctacaaat tgcaagttga ggtggcaggt gagctatttc aagagggagc
     3121 taaaagagga atggtaatgg actattcgga tctaaaagca gtggtaaaac aacatatttt
     3181 agagccgatg gatcacgctt ttatttacga cttacagagt gagcgtgaaa gccaagtagc
     3241 acaattatta attgatttaa actccaaggt ttatggtatc ccaactcgta ccacagccga
     3301 agaaatggcg aaatatatgt ttgaaaaatt agagaaagtg ggcttaccgg ttagcctaat
     3361 tcgcttgtgg gaaacgccta cttcttattg tgagtacagc aaataatggc ggagttaatt
     3421 tcaaaccctc gttttccgat tgttgagatc tttgaaagct tacaagggga aggctttaat
     3481 accggaatgc cggctatttt tgtacgtttt ggcaaatgca acctcacttg cccgtggtgc
     3541 gataccaatt acaatcaatt tgagcaatgg acgttaagcg atattcttgc caaagtaaga
     3601 agctattctg cgaaaaatgt gattattacc ggaggcgagc caacgattca gcctaattta
     3661 tcgttattat tagaacaatt taaaaaagag ggatattttt tagcgatcga aaccaacggc
     3721 ttaaaagagg ttccggcaca aattgattat attgcgacca gcccaaagcg aatgtaccaa
     3781 gaaaagtatc aacgccgttg cattgaattt gcgaatgaag tccgtatcgt cgttgatgga
     3841 gaagtacagg gtttctgtga gcaaatagaa agccaaatta aagctgagca ttactatctt
     3901 tcaccttgtg aggtagaggg aaaaatgaac ttgctggaaa ccatcaccca gattgggtta
     3961 ttaaatcagc gtccaaataa gcctaaatgg cagctaagta tccaaacgca taaaattgtg
     4021 gggattgaat aagtagaagt tagaagatga tttgtaaaag atcagacttg atctgacaat
     4081 tcactctaaa aagtgagagt ttcccgttta gaatatgagt gtccaaa
//
LOCUS       DANLVT010000165         4081 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.165, whole genome shotgun sequence.
ACCESSION   DANLVT010000165 DANLVT010000000
VERSION     DANLVT010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4081)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4081)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4081
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.165"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            85..231
                     /locus_tag="PXC99_002383"
     CDS             85..231
                     /locus_tag="PXC99_002383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418788.1"
                     /translation="MDTTQKRVALFIIGLSVVMWLRKHNCCTVIFVLLLAALAFSYTM
                     EHLY"
     gene            247..453
                     /locus_tag="PXC99_002384"
     CDS             247..453
                     /locus_tag="PXC99_002384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418789.1"
                     /translation="MVKNVVHEEILHNRAELQQAVEKEEFCAKCDNSVVFHLRDNYHE
                     FTLGLDTILQCLHFAEEKGAIRIP"
     gene            450..1226
                     /locus_tag="PXC99_002385"
     CDS             450..1226
                     /locus_tag="PXC99_002385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418790.1"
                     /translation="MNIEYSLNHCQGDGVAFYGRLGTDDLIQLFNHLNPQKRKQKMFA
                     NLLTHIESWETHDDIGFEIIRNRFGYRYSHWNTMELYAKTADQLVFFNDSDARRNWYF
                     PTSKVYKYKGLWDEFIQDLEQYIKGTSREMESVGYQIIEASPYQTETVFKFNTENYLV
                     ELKRKPSEFYSELVDWAFGDMCDFEATIEQICQGQLCYADFEATVTDKKSEIQLGLAR
                     LSGISYSPNDRSFSGYRQELIGEAIASARHNAARFAYLHA"
     gene            1341..1753
                     /locus_tag="PXC99_002386"
                     /pseudo
     CDS             1341..1753
                     /locus_tag="PXC99_002386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484619.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
     gene            1767..1922
                     /locus_tag="PXC99_002387"
     CDS             1767..1922
                     /locus_tag="PXC99_002387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418791.1"
                     /translation="METRIVKVIYDDGDYFFTRINADEQAIRNYYAIGSSIGFDDIRK
                     IIAVEIL"
     gene            2002..2976
                     /locus_tag="PXC99_002388"
     CDS             2002..2976
                     /locus_tag="PXC99_002388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HDL5418792.1"
                     /translation="MNTQPKFDLYQHITDRIVVALEQGTAPWLKPWSHPECNMALPRN
                     AVSNRLYSGINTLLLWIATAEHGYKQCKWITAKKANELGGYIRKGEKATVVMNYRPDE
                     REKLDEEGNIVYDEEGNPEMERHFFINKHNLFNLDQCENLPVELYDPVSEPKQPKSEP
                     NQYDIFAEIRQIIKGMDLQVEMKPSNRAFYQPGEDKVVMPEMKQFANAQAFHSVLLHE
                     MTHATGANNRLNREGITSGKAKFGNKVYAFEELIAEMGGAFLCAYLGFDTVPQNAAYI
                     ESWIRVLKEDKRAIVRASGKAREACQYMLDALNVAQLADKYDVFEEAA"
     gene            3063..3260
                     /locus_tag="PXC99_002389"
     CDS             3063..3260
                     /locus_tag="PXC99_002389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418793.1"
                     /translation="MTKSTEIPRGHDNWVITGRDNDGKWHKERFLYYSRREAIQQFRR
                     KHNCVGKHSVIESITPQFGWY"
     gene            3337..3579
                     /locus_tag="PXC99_002390"
     CDS             3337..3579
                     /locus_tag="PXC99_002390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418794.1"
                     /translation="MFNLNLFKRPIELSTLESWSKFCDDVGKVAFIAIPPMIYSNYDL
                     CIKIGNISALLAITYGFLLSGRTIRQFIEKEKSRWD"
     gene            complement(3739..3996)
                     /locus_tag="PXC99_002391"
     CDS             complement(3739..3996)
                     /locus_tag="PXC99_002391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418795.1"
                     /translation="MNNKQILSIAQKFRQNHKDSHPFMLERGYVRIYQGKAYGWCAEQ
                     EDANTECPTALIVSLSNEIFEATGGDDISGAEKWEKYNSNF"
BASE COUNT         1264 a          718 c          860 g         1239 t
ORIGIN      
        1 ttaaccggcg atatttttga agcagtcggc ggagataagc tgaaaggtgc caaaaaatgg
       61 cagccttaca agaaagaatg acagatggat acgacacaaa aacgtgtggc tttattcatc
      121 attggattat ctgttgtgat gtggctaaga aagcataact gctgtacagt gatatttgta
      181 ttgttgttgg cagcgttagc atttagctac acgatggaac atttatatta gctggggaac
      241 tgaattatgg taaagaatgt ggttcatgaa gagatattac ataaccgtgc agaattacag
      301 caagcggttg aaaaagaaga attttgtgca aaatgtgata actcagtagt attccattta
      361 cgtgataatt atcacgaatt tacgcttggg ttagatacta tattgcagtg tctgcatttt
      421 gctgaagaga agggagctat ccggatacct tgaatattga gtattcactc aatcattgcc
      481 aaggagatgg agtcgcattt tatggtcgac ttggtacaga tgatctaatc cagcttttca
      541 atcatctcaa tccacagaaa cgtaaacaga aaatgtttgc taatttgcta acgcacattg
      601 agtcttggga aacccacgat gatattggtt ttgaaattat acgaaatcgc tttgggtatc
      661 gttactcgca ttggaatacg atggagcttt atgctaaaac tgcagatcag ttagtgtttt
      721 tcaatgatag tgatgctcga agaaactggt attttccgac ttcaaaagtg tataaataca
      781 aaggcttgtg ggatgagttt attcaggatt tagaacagta tattaagggt acttcccgtg
      841 aaatggaatc ggtcggttat caaattattg aagcctcgcc gtatcaaacg gaaaccgttt
      901 tcaaatttaa tacggaaaac tatctagtag aactgaaacg taaaccttct gagttttatt
      961 cagagcttgt tgattgggca tttggtgata tgtgtgattt tgaagcaact atagagcaga
     1021 tttgtcaagg gcaactctgt tatgctgatt ttgaagcaac tgttaccgat aagaaaagtg
     1081 aaattcagtt aggtcttgct cgcttgagtg gaataagtta ctcgccgaat gaccgttcgt
     1141 ttagtggtta tcgacaagag cttattggtg aggcgattgc ctctgctcgc cataatgcag
     1201 cacgttttgc ctacttgcac gcctaatttg cagatttgta cttcaatttg accgcttgta
     1261 gtggttaatt ttcaccccgt ggggaaatat tttccctatt gggcaagatg tttctccact
     1321 ttttaatttg gagaaatgtg atgaaaaatg aacacaattt agagcaactt aaatatattt
     1381 gggataaccg caaccttgaa aataaagcct atcaatacct gtttcacatt tgcattgagc
     1441 cgatgaaaaa aggagattgg aatcgttata cgatttggct taattttcac ggcaacttaa
     1501 tcaacgtgtc agacgttgta tatcgagttg tggaatctca aaagctcaag gatgacatca
     1561 aaatgtggta tgacaataat accattgtcg tccgataaaa gttgaaacaa caggcttcat
     1621 ctcatattta ctgcaccagt tctatcaggg gatagcctat attttactgg aacagggaat
     1681 gattactgaa actgaagcag ccgagaaaag ttataacttc agagctgcaa attgttttca
     1741 acgtttgctt taatggaggt gagataatgg aaactcgcat tgttaaagtt atttacgatg
     1801 atggtgatta tttctttacc cgaatcaatg ctgatgaaca ggctatccgt aattactacg
     1861 ccataggcag ttcaataggt tttgatgata taagaaaaat tatcgctgtt gaaattttat
     1921 aaaccaccca taggggaaac tatttcccca tagggtgata gcgtttcccc atttttctac
     1981 ccgaactttg gagaaacact tatgaacact caacctaaat ttgatttata ccaacacatc
     2041 actgaccgaa ttgttgtagc actggaacaa ggtacagccc cgtggttaaa accgtggagc
     2101 catccggaat gcaatatggc attacctcgc aatgcggtat ctaaccgctt gtattccggt
     2161 atcaatacac tcttactctg gattgctact gctgaacatg gttacaaaca gtgcaagtgg
     2221 attacagcaa aaaaagccaa tgaactcggc ggatatatcc gtaaagggga aaaagctact
     2281 gtggtgatga actaccgtcc tgatgagaga gagaaactcg atgaggaagg gaatattgtg
     2341 tatgacgagg aaggaaatcc ggaaatggaa cgacactttt tcattaataa gcacaatctg
     2401 ttcaatctgg accagtgtga aaatttaccg gtggaactgt acgatcctgt atcagaaccg
     2461 aaacaaccta aatctgagcc aaaccaatac gatatttttg ctgagattcg gcagattatc
     2521 aaaggaatgg atttgcaggt ggaaatgaag cctagcaatc gggcatttta tcaaccaggt
     2581 gaagataagg tcgtaatgcc ggagatgaag cagtttgcaa atgctcaagc gtttcatagt
     2641 gtattgttac acgaaatgac tcacgcaacg ggggcaaata atcggcttaa tcgggaaggt
     2701 attacttccg gaaaggctaa atttggaaac aaagtctatg cttttgagga gttgattgct
     2761 gaaatgggcg gtgcattttt atgtgcctac cttggttttg atactgtgcc tcaaaatgcg
     2821 gcgtatattg aaagttggat tcgagtattg aaagaagata aacgggcgat tgtccgtgct
     2881 tccggaaaag ctcgtgaagc ctgccaatac atgttagacg cattaaacgt cgcacagttg
     2941 gctgacaaat acgatgtatt tgaagaagct gcttaacaaa tttgccgaaa ggcatatctc
     3001 aaggggagac ctatcccttt gggcatagtg tttccctatt ttttattaaa tggagaaaag
     3061 ctatgacaaa atcaactgaa atacctcgtg gacatgataa ctgggttatt acaggcagag
     3121 acaatgatgg gaaatggcat aaagaacgtt ttctttatta ttctcgccgt gaagccatcc
     3181 aacagtttcg tcgaaaacac aactgcgtag gtaaacatag tgttattgaa tcaataacac
     3241 ctcaatttgg ctggtattaa ccggctttcc cgtggggaga tactctccct tcggagcatt
     3301 gtgtctccct ttttattcac ttaactagag gacacaatgt tcaatctaaa cttatttaaa
     3361 cgccctattg agctttcaac gcttgaatct tggtctaaat tctgtgatga tgtcggtaaa
     3421 gttgcattta ttgcgatacc tccgatgatt tatagtaatt atgatctatg tatcaaaata
     3481 ggaaacataa gtgctttatt ggcaattacc tatggattct tattatcagg caggactatc
     3541 cgtcaattta ttgagaagga gaaatcaaga tgggattaac aatcggctta tggatcattg
     3601 cttttatagg ctttgcactg gttttttggg caaatagctt actcaaagag caagatgaac
     3661 gccttaaaca gctaaaaaaa tagctcaact ttacactcaa tacggcacat ttggtgccgt
     3721 atttcattct tatcctaatt aaaaattaga attatatttt tcccattttt cagccccact
     3781 tatatcatca cctccagttg cctcaaaaat ttcattagat aagctgacaa ttaaggcggt
     3841 agggcattcc gtgtttgcat cttcttgctc tgcacaccag ccataggctt ttccctgata
     3901 aatacgaaca taaccacgct ctagcataaa agggtgagaa tccttgtgat tttgacgaaa
     3961 tttttgagca atagacaaaa tttgtttatt gttcataatt atttttctta ttgcttatat
     4021 gctgaaaatt gatgattgaa tttattatat ctaattataa tattcaatcc tgttgctata
     4081 c
//
LOCUS       DANLVT010000166         4019 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.166, whole genome shotgun sequence.
ACCESSION   DANLVT010000166 DANLVT010000000
VERSION     DANLVT010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4019)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4019)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4019
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.166"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            10..606
                     /locus_tag="PXC99_002392"
     CDS             10..606
                     /locus_tag="PXC99_002392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418796.1"
                     /translation="MKKLLMTLCCLPAFALANETGESCSKIEDSAKRLECYDSVFVKK
                     DTGKDEATDEKSNWEYEQKKDELRNATTYFAKIRSTNTIDFGFPYNSSSMNLMLRKDP
                     KYGNDVIFSVHGQFNGCMIESCKITVKFDDGKLESYRMIGADGGSNDTLFIENAKAMK
                     TFVDKLKKSKKLIVEASFYNYGKGQFTFDTQGLEWKHF"
     gene            complement(642..1379)
                     /locus_tag="PXC99_002393"
     CDS             complement(642..1379)
                     /locus_tag="PXC99_002393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HDL5418797.1"
                     /translation="MLSKQVLSISESRLSTYLFCFFRNDPTKQKEAIAIYTALQHRTG
                     IYFSLIQEIEVALRNEVSQLLRFAAPNHNLYEFFHFLANDSNAPLNAESKRQLQKAIS
                     ECGRNYNENDIISHISFGFWVNLFNYDIKRNQYVAYWQSVLKPIFGHRFSNFKDLYNT
                     LKQIMRFRNRLYHQEVVWNKRIAKKPTHALENLEKTYKQFELALQKIAPERFAFRQLS
                     QALIWQRQIFFDQQIFEAEIVILPQHI"
     gene            complement(1531..1905)
                     /locus_tag="PXC99_002394"
     CDS             complement(1531..1905)
                     /locus_tag="PXC99_002394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418798.1"
                     /translation="MTEFKDVKQAIVEAQLASTPKDKVVNDIMKGSAELLSANDIINR
                     LGIGADEFQELVNLPNHYLRINGGLGAAVYNTRRMFDTHVELVNQELEKNISFPKPDL
                     YILGKARWKKETFKKWLEEQCR"
     gene            complement(1917..2573)
                     /locus_tag="PXC99_002395"
     CDS             complement(1917..2573)
                     /locus_tag="PXC99_002395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5418799.1"
                     /translation="MNTQTLGDRIKSRRKELKLTQKDLATALKGVSHVAVSQWESSTT
                     KPNSENILDLSTVLQCDISWLLRGNGESNVLPASLGMTKVPLISYIQAGQWTGIDDFR
                     ETCGDYEYILTDLEVSEDAFALEIKGDSMEPDFIEGDRVIIDPDVQPHAGEFVAAING
                     DYEATFKKYRPLEDLDEYGRQHFELIALNPDYHKLSTLKQEIRIIGTMVEHRIYRRKR
                     "
     gene            2698..2886
                     /locus_tag="PXC99_002396"
     CDS             2698..2886
                     /locus_tag="PXC99_002396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cro/Cl family transcriptional regulator"
                     /protein_id="HDL5418800.1"
                     /translation="MKKDDVLEHFGTLEKVAATLGISVSAVSQWGEIIPEKNAYRLQE
                     ITAGKLKVKHSLYRNRSK"
     gene            2944..3627
                     /locus_tag="PXC99_002397"
     CDS             2944..3627
                     /locus_tag="PXC99_002397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage regulatory protein/antirepressor Ant"
                     /protein_id="HDL5418801.1"
                     /translation="MNQLLNISAPKASITMSSREIAELCEKEHRHVTRDIEAMFSQLD
                     IPAEGYAHFWTHPQNGQTYREFRLPYDLTLTLISGYSVILRKKIIDRWQELESRQGIP
                     QSFSQALRLAAEQQEVIEQQNHQLAIQAPKVAFVEHYVEVGTTKSLRETAKILNFPEK
                     RLIECLERYRVLYRQSGNLLPYQDKQAKQLFAVKTGTAEHGHNFTQTRVTAKGIEWIA
                     QRYASELGQ"
     gene            3624..>4019
                     /locus_tag="PXC99_002398"
     CDS             3624..>4019
                     /locus_tag="PXC99_002398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418802.1"
                     /translation="MRFTSTINNVRLVEWEINITQGALVDLINQASSWAKAVVIDGIT
                     YYWMSFSKVCEELPAVFSKEDTVYRQYKVLKEKGIIDHFKMDGKDYVRLTEKGCEWNK
                     FEPIRESEKNPSIGNNSEQTRKNFRESSEK"
BASE COUNT         1298 a          732 c          764 g         1225 t
ORIGIN      
        1 ggaggttata tgaaaaaact actgatgact ttatgttgtt tgcccgcttt tgctttagct
       61 aacgaaactg gagaaagttg ctctaagatt gaagatagtg caaaacgctt agaatgttat
      121 gatagtgtct ttgtgaaaaa agatactggt aaagatgaag ctaccgatga aaagtctaat
      181 tgggaatatg aacaaaagaa agatgaattg cgtaatgcaa cgacttactt tgctaaaatt
      241 agatcaacta acacaataga ttttggtttc ccgtataatt catcatcaat gaatttaatg
      301 ttacgcaaag accctaaata tggcaatgat gtaattttta gcgtacacgg tcaatttaat
      361 ggctgtatga ttgagagctg taaaattact gtgaagtttg atgatggtaa attggaaagt
      421 tatcgaatga ttggggcgga tggtggcagc aatgatacgc ttttcattga aaatgcaaaa
      481 gcaatgaaaa cctttgtaga taagttgaaa aagtcgaaaa aactaattgt agaggcgagt
      541 ttttacaatt atggcaaagg gcaatttacc tttgatacac aagggttaga gtggaaacat
      601 ttttaattaa gaaaaagcta catagatgcg tagctttttg cttagatatg ttggggcaaa
      661 ataacgattt cagcttcaaa aatttgttgg tcgaaaaaga tttggcgttg ccaaataagt
      721 gcttgtgaaa gctgacgaaa cgcaaatcgt tcaggtgcta tcttttgtag tgctaactca
      781 aattgcttgt aagttttttc taaattctct agtgcgtgcg ttggtttctt ggcaattcgc
      841 ttattccaaa ccacttcttg atgatacagc cgatttctaa aacgcataat ttgctttaat
      901 gtattgtata aatccttaaa attactaaat ctatgtccaa aaataggctt taatacgctt
      961 tgccagtaag caacatattg attacgcttt atatcataat taaacagatt tacccaaaat
     1021 ccaaaagaaa tatgagaaat tatgtcattt tcattatagt tacgtccgca ttcactaatg
     1081 gctttttgta gctggcgttt agattctgca ttaagaggag cattactatc gttcgctaga
     1141 aaatgaaaga attcgtataa attatgatta ggtgcagcaa agcgtaacaa ctggctgact
     1201 tcatttctta gtgccacctc tatttcttga atcaatgaaa aataaattcc tgttcgatgt
     1261 tgcaaggcgg tataaattgc aatagcttct ttctgttttg tgggatcatt tcggaaaaag
     1321 caaaataaat atgtactcag ccgactttct gaaatactta gcacttgttt ggacaacata
     1381 ttttccttta ctcaagttta gtttaatgta ataatacttg cactggcaac ggacccgaag
     1441 ccccagacgt aggagctgga ttgctttgta aagtgtgaga atcgcttatt tgcggttcag
     1501 aaaaggtagg ttttttaacc taccttttct ttatctacac tgttcttcca accatttctt
     1561 aaatgtttct tttttccaac gagctttccc caaaatatat aaatcaggtt taggaaatga
     1621 aatattcttt tctaactctt gattgactaa ctcaacatgg gtatcaaaca ttcttcttgt
     1681 attatacaca gcagcaccta accctccatt tatacgcaaa taatggttag gtaaattaac
     1741 caactcttga aactcatctg ccccaatacc taacctattg ataatatcat ttgctgaaag
     1801 cagttccgca cttcctttca ttatgtcatt aacgacttta tctttaggtg tcgaagctaa
     1861 ttgagcttct acaatcgcct gttttacatc tttaaattct gtcatattat caattcctat
     1921 ctctttctac gataaatacg atgctctacc attgtgccga taattctgat ttcttgcttt
     1981 agcgttgata atttatggta atccggatta agagcgataa gctcaaaatg ttgtcttccg
     2041 tattcgtcta agtcttctaa cggacggtat tttttgaaag tggcttcata atcgccatta
     2101 attgctgcca caaactcacc ggcgtgaggt tgtacatcag gatcaataat tactcggtct
     2161 ccttcaataa aatcaggctc catcgagtcc cctttgattt ctagggcaaa agcatcttca
     2221 gacacctcaa gatcagttag gatatattca taatccccac aggtttcacg aaaatcgtca
     2281 attcccgtcc attgtccggc ttgaatatag ctaattaatg ggactttagt cataccgagg
     2341 ctagcaggta gaacattaga ctctccatta ccacgcaaga gccaactaat atcgcattgc
     2401 aatactgtag ataaatccaa aatattctct gaatttggct tagtcgtact actttcccat
     2461 tgagatactg caacgtgtga gacccctttt aacgcagtag caagatcttt ctgtgtcaat
     2521 tttaattctt ttctacggct tttaattcta tcgcccaagg tctgagtatt catagtatcc
     2581 ccttaaaggt aaaaataaag ttgctgttaa gttatcttaa catttattga cttaagtttc
     2641 ctttaattgt atatttaaga ggtcttaaat aaaattcaag aaaggaatta agaaaatatg
     2701 aaaaaagatg atgtgctcga acatttcgga actctagaaa aagtggcggc aactttaggg
     2761 attagtgtat ctgctgtttc tcaatggggc gagattattc ctgagaaaaa tgcgtacaga
     2821 ttacaagaga tcactgccgg caagttaaag gtcaaacact cactttatag aaatagaagc
     2881 aaataaaaaa ccaccgctgt aacggtggct ttcatacata attaaacacg aaaggtattt
     2941 tcgatgaatc aattattaaa catttcggca ccaaaagcaa gcattacgat gagtagtcgt
     3001 gagattgctg agttgtgcga aaaagaacat cgacacgtta ctcgtgatat agaagcgatg
     3061 tttagtcaat tagatattcc tgccgagggg tatgcccatt tttggacaca ccctcaaaat
     3121 gggcaaacat accgggaatt tcgattgcct tacgatttaa cccttaccct aatttccggc
     3181 tatagcgtga tacttcgcaa gaaaattatc gaccgttggc aagagctaga aagcagacaa
     3241 ggtattccac aatctttctc tcaagctcta cggttggcgg cagaacagca agaagtgatt
     3301 gagcagcaga atcatcaatt agccattcaa gccccgaaag tcgcatttgt ggagcattat
     3361 gttgaggtgg gaacgactaa atcattgcga gaaaccgcca agatactcaa ttttccagaa
     3421 aagcggttga ttgaatgttt agaacgatat cgagttcttt atcgccaatc aggaaaccta
     3481 ctcccttatc aagataaaca agctaaacag ctttttgcag taaaaaccgg cacggcagaa
     3541 cacggtcata attttaccca aacgagagta accgccaaag ggattgaatg gattgctcaa
     3601 cgttacgcat cggagttagg acaatgagat ttacatcaac cataaacaat gtccgcttag
     3661 tggaatggga aatcaatatt acacaagggg cattggtcga tttaatcaat caagcctcca
     3721 gttgggcgaa agcggtggtt attgacggca taacctatta ctggatgtca tttagcaagg
     3781 tttgcgaaga gttacctgcg gtttttagca aagaagatac agtttaccgc caatataagg
     3841 tgttgaaaga aaaaggcatt atcgaccact tcaaaatgga cggtaaagat tatgtccgtt
     3901 taaccgaaaa aggttgtgaa tggaataaat tcgagccgat ccgtgagtcg gaaaaaaatc
     3961 cgagtatcgg aaataactcc gaacaaactc ggaaaaattt ccgagaaagc tcggaaaaa
//
LOCUS       DANLVT010000167         3962 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.167, whole genome shotgun sequence.
ACCESSION   DANLVT010000167 DANLVT010000000
VERSION     DANLVT010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3962)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3962)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3962
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.167"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            74..1276
                     /gene="yedE"
                     /locus_tag="PXC99_002399"
                     /pseudo
     CDS             74..1276
                     /gene="yedE"
                     /locus_tag="PXC99_002399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005824242.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
     gene            1312..1581
                     /gene="yedF"
                     /locus_tag="PXC99_002400"
     CDS             1312..1581
                     /gene="yedF"
                     /locus_tag="PXC99_002400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007241376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HDL5418803.1"
                     /translation="MAFTVVQKLDKDPKDITPDYTLDTLGEPCPYPAITMLETMPQLQ
                     KGEILELLSDCSQSINNIPIDTKNHGYTLLSVEQNGTKLRYLIQR"
     gene            1681..2025
                     /locus_tag="PXC99_002401"
     CDS             1681..2025
                     /locus_tag="PXC99_002401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HDL5418804.1"
                     /translation="MNKYALLAIFWFIIGIYALLFRESTNDIPPFPHFDKVSHFALFF
                     IQIWLSANAFIRSKKGIPYFGLIIFALLYAFTSEWAQATFTSTREGSWLDGLADMLGA
                     SLSLLLVKYCKK"
     gene            complement(2088..3035)
                     /locus_tag="PXC99_002402"
     CDS             complement(2088..3035)
                     /locus_tag="PXC99_002402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HDL5418805.1"
                     /translation="MNRITQILNIKHPIVQAPMSWLTDAHLVASVAEAGGLGFLAPHA
                     GQTTNPTSNEEVLDRMRNEIRKVKALTDKPFGVPFILSYDFSLIPLMVDLFIEERVPV
                     VLDNGWLDPEIYAKFKAAGIKIICRLPNPNLADALKAQALGADILVLTGFDEGGTLPM
                     KEVGSFNVLAEFVGKVDLPIMLAGGIADKKAVQAALTLGAEGVWIGTAFIATEECRAS
                     EKVKNWIVEANANDLLLFRTEPHYYRSLPTGLAKKCFEMSENGATRSEIAKVMNAGTG
                     MRLGMLEGDFDNGYVSVGNGISQINKIKSVKELIDELMA"
     gene            3218..>3962
                     /locus_tag="PXC99_002403"
     CDS             3218..>3962
                     /locus_tag="PXC99_002403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418806.1"
                     /translation="MSIRWENIKPLQGSQNSAFEELVCQLARQEFKSQGKFTRISAPD
                     GGIEAMCELPDGSVCGWQAKYFLSSFSSSQWQQIEDSFKESLKNYPKLTKYYVCVATD
                     RANANVSGKKSFLTKWEEYTQRWKDFAQSQGREIEFEFWGSFELSDLLSKPENAGKKF
                     FWFNESELSDKWFEQYNQQAINNLGVRYTPEINVDLPIAMQLESLARTQIFKKHLSDE
                     FHKLLVEIKSQYKSLYRYEALENHFEPVYE"
BASE COUNT         1153 a          831 c          779 g         1199 t
ORIGIN      
        1 gtcaatcagt ccctttcttc atcgttatac cctcttgcaa atccgattaa tctatcctta
       61 gttaaggtgt tttatgttag cgatttggca aagttttaaa caaaattatc taatcaaata
      121 ttggaatcct gttgcagcag tgatcgcagc tggtattatt tcagcttatt atttcggcat
      181 tactggcact tattgggcgg ttacagggga atttacccgt tggggcggtc atctgttaaa
      241 tgctttgggt gttgatgttt cgaactggag ctattttcaa ctcatcggct tagacggcac
      301 catctttacc cgcattgacg gtgtgatgat tctcggtatg tttgccggct gtctttctgc
      361 cgcattatgg gcgaacaacg tcaaatggca taatcagcca cataaaaaac ggattatcca
      421 agccttgatt ggcggtgcgt tagccggttt cggagcccgt ttagcaatgg gctgtaacct
      481 cgcctctctt tttaccggta ttccgcaatt ctccgtccac gcttggtttt tcacctttgc
      541 gaccgccatc ggcacttact ttggggtaaa agtgacttta ttaccgatgt ttagagtgaa
      601 attagagctg aaaaaagggg cagcaaaaat caaagaaaac gatccgaaac aagctaatcg
      661 ccgtttttgg gttggtatgc tcatttttat cacttatctt tctgcttccc tttatgtaat
      721 gcaatcctca atcaaacttg gttttgcaat gctttgcggc ttagcctttg gcttattgat
      781 tgaacgagcc caaatttgct ttacctccgc tttccgtgac ttatggatta ccggacgggc
      841 ttatatggca aaagcaatta ttttcggcat tattgccggc acaatcggcg tgttctctta
      901 tattcaatta ggtgtttcac ctaaaatttt gtgggctggc ccaaatgcca ttatcggcgg
      961 attattattc ggatttggca ttgtgcttgc cggcggctgt gaaaccggct ggatgtaccg
     1021 ttcaatggaa ggacaggttc attttatgtg ggtcggcgta ggcaatgtag tcggttcaac
     1081 cctgctggct tactactgag gcgacttagc tccggtgctt acccttgatt atgaaaaaat
     1141 caacctactc aaagaatttg ggccggttgg cggattattc atcaattatg gcttattaat
     1201 tctttgctta atcgctgtag tttggtggga aaaacgcttc cttgccaaag cgaaagcaaa
     1261 attagcaact gcgtaatctt tttaacttca accaacaaga ggaaaatgac tatggcattc
     1321 accgttgtac aaaaactaga taaagatcca aaagacatca cgcctgatta caccttagat
     1381 accttaggcg aaccttgccc ttaccctgcg attacgatgt tagaaacaat gccacagctg
     1441 caaaaaggag agatattgga actgttaagc gattgttccc aatcgattaa taatattccg
     1501 attgatacta aaaatcacgg ctatacccta ttaagcgtgg aacaaaacgg cactaaatta
     1561 cgctatttaa ttcagcgtta attgcaaaaa attcgcacaa aacgaccgct tgtcgtaaaa
     1621 tagcaactat ttaagagcct tgtaacgcaa ggctctttta ttctaagagg taaaagaaaa
     1681 atgaataaat acgctttact tgcaatattt tggtttatta ttggcattta tgctttactt
     1741 tttcgtgaaa gcactaatga tataccgcct tttccacatt ttgataaagt aagccatttt
     1801 gccttattct ttatccagat ctggttatct gcaaacgcct ttatccgttc aaagaaaggg
     1861 ataccttatt ttgggctaat aatttttgcc ttactctatg ctttcaccag cgaatgggct
     1921 caggcaacct tcacctcaac ccgagaaggt tcttggcttg atgggctagc agatatgcta
     1981 ggagcctcac tttcattatt gctggtaaaa tattgcaaaa aataaagcat aaaagaccgc
     2041 ttgttatatg gtttagccat actacaagcg gtcatttttt accaaaatta tgccatcaac
     2101 tcatcaatca attctttcac acttttgatt ttgttgattt gtgaaatgcc attgcccacc
     2161 gacacatagc cattgtcaaa atccccttct aacataccca aacgcattcc tgtaccagcg
     2221 ttcattacct tagcaatctc actacgagtt gccccatttt cgctcatttc aaagcatttt
     2281 ttcgctaatc cagtcggcag tgaacggtag taatgtggtt cggtacggaa taacagcaga
     2341 tcattggcat ttgcctccac aatccagttt ttcacttttt cgcttgcacg gcattcttcg
     2401 gtggcgataa atgccgtgcc aatccacacg ccttcagccc caagcgttaa ggcagcctgc
     2461 accgcttttt tatcggcaat accaccagcc agcattatcg gcaaatccac cttgcccaca
     2521 aattccgcca gcacattaaa actgcctacc tctttcatcg gcaaagtacc gccctcatca
     2581 aaacccgtca gcaccaaaat atctgctccc aatgcttggg cttttaaagc gtccgccaaa
     2641 ttgggattag gcaaacggca gatgatttta atgccagcag ctttgaattt ggcgtaaatc
     2701 tctgggtcaa gccagccgtt atccagcacc acaggcacac gctcttcaat gaataaatcc
     2761 accattaacg gaatcagcga aaaatcataa gacaaaataa atggtacgcc aaaaggctta
     2821 tcggtcaatg ccttaacctt acgaatctcg ttacgcatac ggtcaagtac ttcttcgttg
     2881 gaagttggat tggtggtttg ccctgcgtgt ggggctaaaa aaccaagccc accagcctcg
     2941 gcaacgcttg ctaccagatg agcgtccgtc agccaagaca ttggcgcttg gacgataggg
     3001 tgcttgatat ttaagatttg ggtaatgcgg ttcattggat tttcctgttt gaataaaaag
     3061 aattggacgt agtttaatgg ttttggattt gagagggaat gcgtgaaaat gggaaggtgg
     3121 ttttcggatt tggaaaatta tcaatgctaa aatacttgaa atacacacgc caatcctcat
     3181 atcaacaaaa ttgaatattt aattatggta aaagaaaatg tctattagat gggaaaacat
     3241 caagccctta caaggttctc aaaatagtgc ttttgaagag ctagtatgcc aattggcacg
     3301 ccaagaattt aaatctcaag gaaaatttac tcgaatttct gcacctgatg gtgggattga
     3361 agcaatgtgt gaattgccag atggttccgt atgtggttgg caagccaaat attttttaag
     3421 ctcattttct tcatcacaat ggcaacaaat tgaagattcc tttaaagaat ctttaaaaaa
     3481 ctatcctaaa ctaaccaaat actatgtttg tgtggcaacc gatagagcaa atgccaatgt
     3541 atctggaaag aaatcatttc ttaccaaatg ggaggagtat acccaaagat ggaaagactt
     3601 tgctcaatca caaggtcgtg aaatagaatt tgaattttgg ggaagttttg aattatctga
     3661 cttattatca aaacctgaaa atgcaggcaa aaaattcttt tggtttaacg aaagcgaatt
     3721 atctgacaaa tggtttgaac aatacaatca acaagccatt aataatcttg gtgtgcgtta
     3781 tacacctgaa attaatgttg atttacctat tgcaatgcaa ttagaaagct tggcaagaac
     3841 ccaaattttc aaaaaacatc tgagtgatga atttcataaa ttgttagtag aaattaaatc
     3901 acaatacaaa tctctttatc gttacgaagc gttggaaaat cattttgaac ctgtatatga
     3961 ac
//
LOCUS       DANLVT010000168         3918 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.168, whole genome shotgun sequence.
ACCESSION   DANLVT010000168 DANLVT010000000
VERSION     DANLVT010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3918)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3918)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3918
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.168"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(302..1396)
                     /locus_tag="PXC99_002404"
     CDS             complement(302..1396)
                     /locus_tag="PXC99_002404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HDL5418807.1"
                     /translation="MKKTTLAILASALIANSALAITIYDHKETGTQIEFIGSARIKWE
                     STSDKTSPVNGKATRNHVNHAVDNNGSRFGFRLTQQVGHGFYALGRVEWRMRGDSSSQ
                     HNFDHIYDHQLYAGIGHKQYGELTYGNMTNIADEVKQTDLPNTLSLSDGLLTGSSRRT
                     LQYVYKGIEGLKLGAFYGGNSQRGNNGLDLVNKRKDIWGAAAIYNYKIDDNQSLKLAT
                     GATRERSEQSIGNYERIALAFGTAYTYGKTTLGLDLERRETEDQNAIGHKRIEKEVRT
                     VLLHRLTDQWNAYTMYAYKENKLNAVGLANDSKVKRNQFMLGTEYYIVPKHLKGFVEW
                     QATRAKHYTNDVKTAKSRNYTTVVGLRAYW"
     gene            1530..2708
                     /gene="lpxB"
                     /locus_tag="PXC99_002405"
     CDS             1530..2708
                     /gene="lpxB"
                     /locus_tag="PXC99_002405"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HDL5418808.1"
                     /translation="MKQQFPVIGLVAGEVSGDILGAGLIKALKVHYPNARFIGVAGSR
                     MIEAGCQSLFDMEELSVMGLAEVVKHLPRLLKRRKQVIDEMLKLKPDVFIGIDAPDFN
                     LTVEEKLKASGIKTIHYVSPSVWAWRQKRVFKIARAANLVLAFLPFEKAFYDKFNVPC
                     RFIGHTMADAIPLEPNRTEACLALNIDESKRYMAILVGSRGSEIQFLAEPFLKAAQLL
                     KARFPDLQFLVPMVSQKRMEQFNAIKQQVAPELELNIIQGKARQAMIASECTLLASGT
                     AALEAMLCKSPMVVGYRMKPLTYWLAKKLVKTDYISLPNLLAQAPLVPELIQEACNPE
                     NLAQELSLFLADDEKNQQHKALLKQQFMQLHQSIQCNADEQAAQAVIDLLNGSTSGQI
                     "
     gene            2735..3787
                     /gene="sohB"
                     /locus_tag="PXC99_002406"
     CDS             2735..3787
                     /gene="sohB"
                     /locus_tag="PXC99_002406"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease SohB"
                     /protein_id="HDL5418809.1"
                     /translation="MWKEVLLNYGIFLLELLTVFGIIAVVVMLILESKKQNENGSISI
                     TNLSEKYKEQQKSLSGFFLSEEELKHQEKQEKKVAKEKAKAEKKRLKAGEECVESPSR
                     LFVLNFNGDMMAHEVNSLRREIDAVISLANPEKDEVLLKLESPGGVVHGYGLAASQLQ
                     RLRDRNIYLTAAVDKVAASGGYMMACVANKIVSAPFAVIGSVGVVAQVPNIHRLLKKH
                     DIDVDVMTAGEYKRTVTLVGENTEKGKQKFQQELEETHSLFKQFVARHRPQLDIEQVA
                     TGEHWFGQQAIELNLVDEIATSDDLLLNAIKEKEVIELKYKEKKKLAQKLGSQFEQSA
                     ENLLAKILHKSRSTLM"
BASE COUNT         1165 a          676 c          850 g         1227 t
ORIGIN      
        1 aataacccct catcactttt tgcagtttaa cctcttttgc aacagataat ttaaatttag
       61 gcgttttggc tgctcagtta ttgccattat gattatatta gttcacacta aaattttagt
      121 gttgtttctt aaagctgaag atgctaatag gtgagtaagc ggtttttacc actttgaaga
      181 taaatgcaat agcttcttgt ttgaaggatt agttgtattt aatcataaaa aatctgcacc
      241 ttaatcagtt ggttagccca acttttaggt gcagatcatt ctagtacgct tttcagtttt
      301 attaccaata tgctcgtaag cctacaacag tcgtataatt gcgagatttt gcggttttta
      361 catcattagt atagtgttta gcacgagttg cttgccattc aacaaagcct tttaagtgtt
      421 ttggaacaat gtaatattcc gttcccaaca taaattggtt tcttttaact ttgctatcat
      481 ttgccaagcc tacagcatta agtttgtttt ctttataagc atacattgtg taagcattcc
      541 attgatcggt taaacgatgg agtaacacag tgcgaacttc tttttcgata cgtttgtgac
      601 cgatagcatt ttgatcttcc gtttcacggc gttctaaatc taagccaagg gtagtttttc
      661 cgtaggtata agctgtaccg aaggcaagag caatgcgttc ataattgccg atagattgct
      721 cagaacgctc acgggttgca cctgttgcta attttaagct ttggttatca tcaattttat
      781 agttataaat tgctgctgca ccccaaatat ctttacgttt attgactaaa tctaagccat
      841 tgtttccacg ttggctattt ccgccataga atgctccgag ttttaatcct tcgatgcctt
      901 tgtaaacata ttgaagcgta cgtcgtgatg aaccggtaag taagccatca cttaagctga
      961 gtgtatttgg taagtcagtt tgttttactt catcggcaat attagtcata ttgccgtatg
     1021 ttaattcacc gtattgttta tgcccgattc ctgcatagag ttgatgatca taaatatgat
     1081 cgaagttatg ttgtgagctt gaatcgccac gcatacgcca ttccacacga cctaaagcat
     1141 agaatccgtg acccacttgc tgggttaaac ggaaaccaaa acgagagccg ttgttatcca
     1201 ctgcgtgatt aacgtggttg cgggtagctt taccatttac cggtgaggtt ttatctgagg
     1261 tgctttccca cttaatacga gcagaaccaa taaattcaat ttgtgtaccg gtttctttat
     1321 gatcgtaaat cgtaatagct agagctgagt ttgcgattaa ggctgatgct aaaatcgcta
     1381 atgttgtttt tttcataaaa atcactccat atgaatagat aaagggaggt agtgtatgtg
     1441 aatattcatt gctagacaat aatgttttgt tagtttatat gatgattggt tataatagag
     1501 tcacttacag atcttcaata atatttaata tgaaacaaca attccccgtt attggcttag
     1561 ttgctggtga ggtctctggc gatattcttg gtgccgggtt aattaaggcg ttaaaagtac
     1621 attacccgaa tgctcgattt atcggtgttg caggctctcg aatgattgag gctggctgcc
     1681 agtctttgtt tgatatggaa gagctttctg taatggggct agcagaggtg gttaaacatt
     1741 tacctcgttt acttaagcgt cgtaaacagg ttattgatga gatgcttaaa ttgaaaccag
     1801 atgtatttat cggtattgat gcaccggatt ttaatttaac cgttgaagaa aaactcaaag
     1861 cgagtgggat taaaacaatc cattatgtta gcccttcggt gtgggcttgg cgacaaaagc
     1921 gggtgtttaa aattgccaga gcagctaatt tagtgttggc atttctgcca tttgagaaag
     1981 cgttctatga taaattcaat gtgccttgtc gttttatcgg gcatacgatg gcagatgcga
     2041 tcccactcga accaaatcgt acagaggcat gtttagcgtt aaatattgat gaatccaagc
     2101 gatatatggc aattttggtg ggaagccgtg gcagtgaaat tcagtttttg gctgagcctt
     2161 ttttgaaggc tgctcagttg ttaaaagccc gttttccgga tttacagttt ttagtgccaa
     2221 tggtcagcca aaagcgaatg gagcaattta atgcaattaa acagcaagta gctcccgagt
     2281 tggaactgaa tattattcaa ggcaaggctc gtcaggctat gattgcgtca gaatgtactc
     2341 ttttggcatc gggaacagca gcactagagg caatgttgtg caaatctccg atggtagttg
     2401 gttatagaat gaaaccgctg acttattggt tagcaaaaaa attagtgaaa accgattata
     2461 tctccttacc gaatttattg gctcaagccc cattggtacc agaattgatc caagaagcat
     2521 gcaacccgga aaatttagct caagagttat ctctattttt agctgatgat gagaaaaacc
     2581 aacaacataa agcattgcta aaacagcagt ttatgcagct acatcaatca attcaatgta
     2641 atgctgatga gcaagctgcc caagcggtta tcgatctcct aaacggctcg acaagcggtc
     2701 aaatttagtt agttttttgt aaaaaggaaa atttatgtgg aaagaagtat tacttaatta
     2761 tggtattttt ttattagagt tattaactgt atttggcatt attgcagtgg tggtgatgct
     2821 gattttggaa tcgaaaaagc agaatgaaaa cggctcaatt tcaattacca atttatctga
     2881 gaaatataaa gagcagcaaa aatctctttc cggctttttt ctaagtgagg aagaattaaa
     2941 acatcaggaa aagcaggaga aaaaagtagc aaaagagaaa gctaaagcag aaaaaaaacg
     3001 cttaaaagca ggcgaagaat gtgtagaaag cccttcccgt ttatttgtat tgaattttaa
     3061 tggcgatatg atggctcacg aagtaaattc cctacgccgt gaaattgatg cggtaattag
     3121 cctcgcgaat ccggaaaaag atgaagtttt acttaaactt gaaagtccgg gcggagtggt
     3181 gcacggttat ggattggctg cttcgcagtt acaacgtttg cgtgatcgca atatttattt
     3241 aaccgcagcg gtagataaag tagctgccag cggtggttat atgatggcgt gtgtggcgaa
     3301 taaaattgtc tctgccccat ttgcggtgat tggctcagtg ggggtggtgg ctcaggtgcc
     3361 gaatatccac cgcttactga aaaaacacga tattgatgtg gatgtgatga ctgcaggtga
     3421 atataaacgc acggtgacgc tggtgggaga aaataccgaa aaagggaaac agaaattcca
     3481 gcaagaactg gaagaaacgc actctctgtt taagcaattt gtggctcgac accgcccaca
     3541 actggatatt gagcaggttg caacaggcga gcattggttt ggtcagcaag cgattgagct
     3601 aaatttggtt gatgagattg caaccagtga tgatctgctc ctcaatgcaa ttaaggaaaa
     3661 agaagtgatc gagctaaaat ataaagagaa gaaaaaactt gctcagaaat tgggttctca
     3721 attcgagcaa tcagcagaga acctgctcgc taagatttta cataaaagtc gttcaacgct
     3781 gatgtagcgt atatattatt aaagggctat cgtttatata gccccttatt ttatcagtta
     3841 gtaatagaat gaagtatttg ttcactattt aaatgacctg gaatactttt ctttaaattg
     3901 agtgaagaat ctaacaat
//
LOCUS       DANLVT010000169         3878 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.169, whole genome shotgun sequence.
ACCESSION   DANLVT010000169 DANLVT010000000
VERSION     DANLVT010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3878)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3878)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3878
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.169"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..479
                     /locus_tag="PXC99_002407"
     CDS             <1..479
                     /locus_tag="PXC99_002407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418810.1"
                     /translation="FSNYFANKYSENIEEGIKNAEKEFKKNYNKSLRYNAKKAQQRVQ
                     KYVEKVNQKNPQALKDLDNISNLKKINENLKKAAKFTGIISSIKDYYDLAEGFRNGIK
                     SNDWEPFLKTSAQIGASALMSMLVASMITGPTTIGSIIISAAFISIGGYIISLASR"
     gene            955..2994
                     /gene="malQ"
                     /locus_tag="PXC99_002408"
     CDS             955..2994
                     /gene="malQ"
                     /locus_tag="PXC99_002408"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HDL5418811.1"
                     /translation="MSNKQNTAHYFYSPNIKEYASPSAFEKIERLLNTDNDLQKNNQI
                     LPLVKVITQPNAEQQAVEISLNFTNVAKWQIVLENGEVRNGEIKAEQSVLTLPADLPL
                     GYHQLSISTENDEESCSLIVTPPKAFQPKPLEERKKLWGAFLQLYTLRSDNNWGIGDF
                     GDLKQFLANISDYGADFVGLNPIHALFPADPDAASPYSPSFRLWQNIIYIDVSAVEAF
                     QQSEQAQQWFHTKETQQQLAELRAKDFVDYSQVAQLKLKALQFAFEHFSQSSQQQSQT
                     AFDAFIEQAGEPLKIQATFDALHHWISSEFGEKGGWTNWAEEYQSYYSPKVAEFQISQ
                     ATQIRFYMWLQFVANQQLAECNRFAQSLSMPIGFYRDLAVGVTQSGAETWADKALFVQ
                     EASIGAPPDMLAPNGQSWGLSPMHPHILQSRGYQPFIDLVRANMKHCGALRIDHILGF
                     ARMWWVANGESAKEGIYVRYPLEDLLSILALESQRHQCLVIAEALGIVPEGILDSLEQ
                     KGIFAYNVFYFEKAENAFKPLENYPYQAMTTLSTHDLPTIQGYWKGYDFELGEKFDTY
                     PSKAVLRKLKEERSYDRLNIRNAVEKVIALEPNEVGVTIKFTHQLQRYVAHTHSALFG
                     TQPEDWLNMLEPVNIPGTSTEYPNWRRKLSATTEQIFANKDIQQLLKDINEIRKG"
     gene            complement(3062..3793)
                     /locus_tag="PXC99_002409"
     CDS             complement(3062..3793)
                     /locus_tag="PXC99_002409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide riboside transporter PnuC"
                     /protein_id="HDL5418812.1"
                     /translation="MGCSSFSTKLKQEFFSGWTTFEASWLIVFLAIQIGIFIYQPDTW
                     IATIAAITGILCVVFVGKGKISNYLFGLISVSLYAYISYTFQLYGEMMLNLLVYVPVQ
                     FIGFYFWRKNMTSENTVNNAGVEEVIAKALTAKQWVIVAITTIIGTFLYIELLKYLGS
                     ALAILDGATVVISIVAQILMVLRYREQWALWIIVNIMTISLWTAMYFQNGETSLPLLV
                     MYVMYLCNSIYGYYNWIKLHRKHQQ"
BASE COUNT         1343 a          755 c          706 g         1074 t
ORIGIN      
        1 aattcagtaa ctattttgct aataagtact ctgaaaacat tgaagaaggc attaaaaatg
       61 cagaaaaaga atttaaaaag aattataata aaagtctaag atataatgct aaaaaagcac
      121 agcagagggt gcaaaaatat gtcgaaaaag tcaaccaaaa gaatcctcag gcactaaaag
      181 atctcgataa catatccaac ttaaaaaaaa ttaatgagaa tttaaaaaaa gcagcaaaat
      241 ttactggtat tattagcagt attaaggatt attacgatct agcagaaggg tttagaaatg
      301 gcataaagtc taatgattgg gaaccttttt taaagacatc tgctcagata ggtgcttcag
      361 ctttaatgag tatgttagta gcctcaatga taacaggccc aacgacaatt gggagtatta
      421 ttattagtgc tgcatttatt tctatagggg gatatattat ttcactagct tcccgttaga
      481 tagtctttgt tatactcaat aacctactat actacctata ggctattgaa ctatcataca
      541 tcagctctat taaccaaaaa aacaaaaaaa aatattgcaa ataaaaataa aattattgag
      601 ataggtccag agtacataat taactcatac ttttttttaa gtttaatcct aagagcctga
      661 gctacaaaag gatataaaaa taaattaacc agcaaatata atagagttat aaaataaatg
      721 aaaaatgtat ttgaattcca ggcctcaaag ctacgcaaat cagaaaaaag cacagcacag
      781 gatattaata aaaacaaaaa tggtatattt aataataaaa cataaccctt tagagttaaa
      841 ttaaattttt ttaacatcat atcacaaaga caaacctgtt gcctactctt cttactcata
      901 ttaatcttca caagatcgtt attttaacaa atacagtaaa ggaaaaaagt cataatgtca
      961 aacaaacaaa atacagctca ctatttttac tccccaaata ttaaagagta tgccagcccc
     1021 tctgcttttg agaaaataga gcggctttta aataccgata acgatttgca aaaaaataat
     1081 caaattctac cgcttgttaa agtgattact cagccaaatg ccgagcaaca agcggtcgaa
     1141 atttcgctga attttacaaa tgtagcaaag tggcaaattg tgcttgaaaa tggtgaggtt
     1201 cggaacggtg aaattaaggc agagcaatca gttctaaccc tgcctgccga tttgccttta
     1261 ggctatcatc agctttctat ttcaactgaa aatgatgaag aatcttgctc gctgattgta
     1321 acaccgccga aagctttcca gcctaagcca ttggaagaaa ggaaaaagct ctggggtgca
     1381 tttttacagc tttatacttt gcgttccgat aacaactggg gaattggcga ttttggcgat
     1441 ctcaaacaat tccttgccaa catttctgat tatggtgcag attttgtggg cttaaaccct
     1501 attcacgccc tctttccggc agatcctgat gcggcaagcc cttacagccc gtcctttcga
     1561 ctttggcaaa atattattta tattgatgtt tcagcagtag aagcctttca acaatctgaa
     1621 caggctcaac aatggtttca caccaaagaa actcaacagc aacttgccga attgcgagcc
     1681 aaagattttg tcgattacag ccaagtagcg caactgaaat taaaggctct gcagtttgct
     1741 tttgagcatt tttcacagtc atctcaacaa caatcgcaaa cagcgttcga tgcctttatt
     1801 gagcaagcag gcgagccatt aaaaatccaa gcaacgttcg atgctttgca ccactggatt
     1861 tcatctgaat ttggcgaaaa aggcggctgg acaaactggg cggaggaata tcaaagttac
     1921 tattcgccta aagtagctga atttcaaata tcgcaggcaa cgcagatacg tttttatatg
     1981 tggttgcaat ttgtggcaaa ccagcaatta gcagaatgca accggtttgc tcaatcactt
     2041 tcaatgccga ttggttttta ccgcgattta gccgttggtg ttactcaaag cggagcggaa
     2101 acttgggcgg ataaagccct atttgtgcaa gaggcgtcaa tcggtgcacc acctgatatg
     2161 cttgccccga acggacagag ctggggactt tcgccaatgc acccgcatat tctacaaagc
     2221 cgaggttatc agccgtttat tgatttagtg cgtgctaata tgaaacattg tggggcattg
     2281 cgaatcgacc atattctcgg cttcgcccgt atgtggtggg tggcgaacgg tgaatcggca
     2341 aaagaaggga tttatgtccg ttatccgctc gaagatttgc tctctatttt ggcattagaa
     2401 agccaacgtc accaatgttt agtgattgca gaggcacttg gcattgtgcc tgaaggcatt
     2461 ttggactctc tcgagcaaaa gggcattttt gcctacaatg ttttttattt tgaaaaggca
     2521 gaaaacgcgt ttaaaccgct ggaaaattat ccttaccaag cgatgacaac tctaagcacc
     2581 cacgatttac cgactattca aggctattgg aaaggctatg attttgagct aggcgaaaaa
     2641 tttgacactt acccaagcaa agccgtattg agaaagctga aagaagagcg ttcgtacgac
     2701 cgcttgaata tccgtaatgc ggtggaaaaa gtgatagcac tcgagccaaa tgaagtggga
     2761 gtaacaataa aatttaccca ccaattacaa cgctatgtgg ctcacactca cagtgcatta
     2821 ttcggtacac agcccgaaga ttggctcaat atgttagagc cggtgaacat tccgggaacc
     2881 agcaccgaat accctaactg gagaagaaaa ttatccgcaa ccaccgagca gatttttgca
     2941 aataaagata ttcaacaact gctaaaagat ataaacgaaa ttcgtaaagg ataataacaa
     3001 gcggtcattt ttaggtaaat ttttacaaaa aatgaccgct tgtaatttgt atttattcgc
     3061 tctattgctg atgttttctg tgaagtttaa tccagttgta ataaccgtaa atagagttac
     3121 ataaatacat cacatacatc accaacagcg gcaagctggt ttcgccgttt tggaagtaca
     3181 ttgccgtcca taaagaaatg gtcataatat tcacgataat ccacaatgcc cattgctcac
     3241 ggtagcgaag taccatcaaa atttgtgcca caatcgaaat aaccactgtt gcaccatcta
     3301 atatagctaa cgcactgcct aaatatttaa gcaattcaat ataaagaaat gtgccgataa
     3361 tggtggtaat ggcgacaatc acccactgtt ttgcggttaa agctttagca attacctctt
     3421 ccacaccagc attatttacc gtgttttcgc tggtcatatt tttacgccag aaatagaaac
     3481 cgataaactg caccggcaca tatacaagta aattcagcat catttcacca tataactgaa
     3541 aggtataaga gatataagca taaagcgaaa cggaaattaa gccgaataga tagttactga
     3601 tttttccttt accgacaaat accacgcata aaatacctgt tattgccgca atagttgcaa
     3661 tccaagtatc gggttgataa ataaaaatac cgatttgaat cgctaaaaaa acaatcaacc
     3721 aacttgcctc aaaagtagtc caaccactaa aaaactcttg ttttaactta gttgaaaaag
     3781 atgaacagcc catatttcct ccatataaag tgaagtattc ttttcaaatt ctaagttatt
     3841 taaattaaga aatcaaaata cagagtacct tttgataa
//
LOCUS       DANLVT010000170         3801 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.170, whole genome shotgun sequence.
ACCESSION   DANLVT010000170 DANLVT010000000
VERSION     DANLVT010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3801)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3801)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3801
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.170"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(162..1664)
                     /gene="ppx"
                     /locus_tag="PXC99_002410"
     CDS             complement(162..1664)
                     /gene="ppx"
                     /locus_tag="PXC99_002410"
                     /EC_number="3.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
                     /protein_id="HDL5418813.1"
                     /translation="MSSNIAPREFAAIDLGSNSFHMIVARIVNGSIQVLSRLKRRVRL
                     ADGLDENLVLSQDAIDRGIACLALFAKRLEGFSAENVKVVGTYTLRRAINNQAFLEQA
                     KAVFPYPISIISGQQEARLIYSGVSHTQPETGRKLVVDIGGGSTEMTIGDDFTPIRAE
                     SRHMGCVSFAKRFFPQGELTIERFDSAYQLAMEKIEDLMWEYKELGWDYALGSSGTIK
                     TVHQVLIANGYRDGLITESRLQKIIDICLEFKSLNEIKLRGLLDERADVLVPGLAILL
                     ALFHTFRIDVLRYSNGALREGVMYGLEKSFQVGDIRQRTAEALAEQFALDKQQAKRVE
                     HTALILFDQIKTWKNRRQVQDLRSMLKWASLLHEIGIVVNHNNVHRHSAYLIANRDLP
                     GFDFEQQTLLSVLMRYHLKGFKRSDIRSINRYQCRDVLTLVRVFRLAVLLNRSRQATV
                     VPKQLNLVIENNAWQLTFEQGFLANNPLISIDLEEEQKILASTNLQFAVS"
     gene            1860..2189
                     /locus_tag="PXC99_002411"
     CDS             1860..2189
                     /locus_tag="PXC99_002411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF496 family protein"
                     /protein_id="HDL5418814.1"
                     /translation="MSEVNKSFHDMLEYVHLYRLKNKLHRETADNDRKIRDNQKRVLL
                     LDNLTQYITDEMSIEEVRAIISNMRDDYENRVDDYMIRNAELSKQRREIRQKMASHKQ
                     APTNKKA"
     gene            complement(2253..3683)
                     /locus_tag="PXC99_002412"
     CDS             complement(2253..3683)
                     /locus_tag="PXC99_002412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIBC"
                     /protein_id="HDL5418815.1"
                     /translation="MSTLTYLQKIGRALMVPVAALPAAALLMGIGYWIDPDGWGTNSQ
                     LAALLIKSGAAIIDNMSILFAVGVAFGMSKEKDGAAALSGLVGYLVITTLLSPGTVAQ
                     LKGIAVDQVPAAFGKINNQFIGILVGVISAEIYNRFYQVELPKALSFFSGKRLVPIVV
                     SFILLYVWPVIFGALVSFGESIKDMGALGAGIYAFFNRLLIPVGLHHALNSVFWFDVA
                     GINDIPNFLGGAKSLAEGKAVIGVTGMYQAGFFPMMMFGLPAAALAIYHSAKPAKKMQ
                     VASIMFAAALASFFTGITEPLEFAFMFVAPVLYVVHALLTGLSVYIAASMEWIAGFGF
                     SAGLVDLVLSTRNPLAVQWYMLLAQGIVFAVIYYVLFRVVIQAFNLKTPGREEDSEVQ
                     TVNTVSRSEQAAKFVEALGGKENITSIDACITRLRLTLNDTAKADETKLKALGSKGNI
                     KLGENGYQVILGPEAEFVADAMKKLN"
BASE COUNT         1242 a          858 c          656 g         1045 t
ORIGIN      
        1 attcgtaaaa tatataatct caataagcaa acatcaaaaa tgagaagttg atcaaatttt
       61 aaaaaatact ttttgcaaaa aattagctaa atttgaccgc ttgttcgcaa aagggaatgc
      121 aataaacgaa aaaggaagcc ttcgcttcct tcatttaaat gttaagagac cgcaaactga
      181 agatttgtac tcgccaatat tttttgctct tcttctaaat ctattgaaat cagtggatta
      241 ttcgctaaga agccctgttc aaaggtaagt tgccaagcat tattttcaat caccaaattc
      301 aactgtttcg gcactacagt cgcttggcga gaacggttta atagcaccgc tagccggaaa
      361 acccgtacca acgttaatac atctctacat tggtaacggt tgatactacg aatatccgag
      421 cgtttgaatc ctttaaggtg gtatcgcatt aataccgata gaagggtttg ctgttcaaaa
      481 tcaaatcccg gtaaatctcg gtttgcaatc aaataagcag aatgacgatg cacattattg
      541 tggtttacaa caataccaat ctcgtgtaat aaacttgccc atttcagcat tgaacgcaga
      601 tcttgcactt ggcggcggtt cttccaagtt ttgatttggt caaataaaat caacgccgta
      661 tgctccaccc tttttgcttg ctgtttatct aaagcaaatt gctcagctaa cgcttctgca
      721 gtccgttggc gaatatcccc aacttggaaa cttttctcca aaccatacat taccccttct
      781 cttaaagccc cgttggaata acgtaataca tcaattctaa aagtgtgaaa aagtgctaaa
      841 agaatagcta agcccggaac tagcacatct gctcgttcat caagtaagcc tcgtagctta
      901 atctcattta acgatttaaa ctctaggcaa atatcaataa ttttctgtag gcggctttct
      961 gtaattaagc catcacgata gccattggca atcagcactt gatggacggt tttaatcgta
     1021 ccggaagaac ctaaagcata gtcccaacct aactctttgt actcccacat taaatcttcg
     1081 attttttcca ttgcaagctg ataggcacta tcaaaacgct caatcgttaa ttccccctgc
     1141 gggaaaaagc gttttgcaaa actcacacaa cccatatgac gactttccgc tcgaatcggg
     1201 gtaaagtcat caccaatagt catttccgtt gaaccaccgc caatatctac cactaatttt
     1261 ctgccagttt cgggttgggt atggctaacg cccgaataaa tcagcctcgc ctcttgttgt
     1321 ccggaaataa tggaaatcgg gtaaggaaat actgctttcg cttgctccag aaaagcttgg
     1381 ttattgattg ctctacgtaa ggtataagtg ccaaccacct tcacattctc tgcagagaac
     1441 ccttctaaac gttttgcaaa taaagctaaa caagcaatgc ctctatcaat cgcatcttgg
     1501 cttaatacta agttttcatc aagcccatct gccagccgta cacgccgttt caaacgggaa
     1561 agcacttgaa tggaaccatt tacgatacgg gctacaatca tatgaaagct gttcgagcct
     1621 aaatcaatag ctgcaaactc tctaggagca atatttgatg acataatgaa accctgtacc
     1681 aataactgaa ataagtaaga tattaccatt tttgagccct agatatcact acaaatttag
     1741 cgttattcgc gagaattaat ttaaatcata aaatgtgata aatttttttg acgaattgac
     1801 ggaaaaagaa taggatttac gagcttactt aattcaacac tacatcaagg gagattgata
     1861 tgtctgaagt gaataaatca ttccacgata tgctggaata tgtgcatctt tatcgtctaa
     1921 aaaacaaact gcaccgtgaa acggcggata atgatcgcaa aattcgagat aatcagaagc
     1981 gtgtactttt attagataac ctaacgcaat atattaccga cgaaatgtct atcgaggaag
     2041 ttcgagcgat tatttccaat atgcgtgatg actatgaaaa tcgagtagat gattatatga
     2101 tccgtaatgc ggaactttcc aaacaacgcc gtgaaatccg ccaaaaaatg gcctctcaca
     2161 aacaagcacc aaccaataaa aaagcataaa aagccaagcg gtctgatttg caaaaaaata
     2221 tgcaaatcag accgcttgtg attaagcaga gattaattca gctttttcat tgcatctgcc
     2281 acaaattctg cttccggtcc caaaatcact tggtagccat tctcgcctaa tttgatatta
     2341 ccttttgacc ctaacgcttt caatttggtt tcgtctgctt tcgccgtatc atttaaggtt
     2401 aggcgtaagc gggtaataca agcatcaatg ctggtaatat tctctttacc acctaatgct
     2461 tcaacaaatt tggcagcttg ttcgctacga gaaacagtat tcactgtttg tacttcgcta
     2521 tcttcctcac gccccggcgt ttttaaatta aaggcttgga tcactactcg gaacaataca
     2581 tagtaaatta ctgcgaatac gataccttgg gccaataaca tataccactg cactgccagc
     2641 ggatttcgtg tcgataacac taaatcgacc aaccctgcac taaaaccgaa accggcaatc
     2701 cattccattg aggctgcaat ataaacagat aatccggtta ataatgcgtg aaccacataa
     2761 agcacaggtg caacaaacat aaaggcaaat tcaagcggtt ccgtaatgcc ggtgaagaac
     2821 gaagctaaag cagcagcaaa cataatagag gctacttgca ttttcttagc cggtttcgca
     2881 ctgtggtaaa tagctaatgc tgccgcaggt aagccaaaca tcatcatcgg gaagaaacca
     2941 gcttgataca tacctgttac tcctatcact gctttgccct cagccaatga ttttgcccca
     3001 cctaagaagt ttggaatatc attaatgcct gcaacatcaa accagaaaac cgagtttaat
     3061 gcgtggtgta atccaaccgg aattaataaa cgattaaaga aagcataaat acctgcccct
     3121 aacgccccca tatctttgat agattcccca aaagagacta aagcaccaaa aataaccggc
     3181 cagacataaa gcaagataaa tgacaccaca atcggcacca atcgtttacc gctaaagaaa
     3241 gacaatgctt tcggtaactc tacttggtag aaacggttat aaatttcggc tgaaataacc
     3301 cctactaaga tcccgataaa ttggttgttg attttaccga atgctgcagg cacttgatca
     3361 actgcgatcc cttttagctg agcaacggtc cccggagaca acaaagtggt aattactaaa
     3421 tacccgacta aaccggataa tgctgctgcc ccatcttttt cttttgacat accaaatgcc
     3481 acacccacgg caaatagaat agacatatta tcaataattg ccgccccaga tttaatcagc
     3541 aatgccgcta attggctatt tgttccccag ccgtccggat caatccaata gcctataccc
     3601 atcaataatg ctgctgctgg taatgcagca accggcacca ttaatgcacg cccaattttt
     3661 tgtaaatagg ttaatgtact cataaaagcc tccaaaaata cctcataatg agtaacttaa
     3721 gcatagaaaa aaaccgatta aagaacaatc aaataaattt ggttttgtga tccatttcaa
     3781 aatatttttt aggagttttt a
//
LOCUS       DANLVT010000171         3703 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.171, whole genome shotgun sequence.
ACCESSION   DANLVT010000171 DANLVT010000000
VERSION     DANLVT010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3703)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3703)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3703
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.171"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..122)
                     /locus_tag="PXC99_002413"
     CDS             complement(<1..122)
                     /locus_tag="PXC99_002413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="entericidin A/B family lipoprotein"
                     /protein_id="HDL5418816.1"
                     /translation="MKKLVLTILAAATFLTACNTVDGVGEDVEKAGDKIQQAAQ"
     gene            complement(202..1179)
                     /gene="rluD"
                     /locus_tag="PXC99_002414"
     CDS             complement(202..1179)
                     /gene="rluD"
                     /locus_tag="PXC99_002414"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HDL5418817.1"
                     /translation="MTQQKILTAEITADLLGARLDQALAQLFPDYSRSRIKVWIESDL
                     VKVNGNIVNKAREKVFGGETVEITAEIEEEIRFEPQDIPLNIVYEDDDIIVINKPKDL
                     VVHPGAGNPDGTVLNALLHYYPPIAEVPRAGIVHRLDKDTTGLMVVAKNIPAQTHLVT
                     ALQKRRITREYEAIASGIMTQGGKVDEPMARHPTKRTAMAVHPMGKPAVTHYRIMERF
                     RNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQLYGGRPRPPKGASDSFLSVLRGFQR
                     QALHATMLRLEHPITGEMMEWHAPLPDDFIELIQALKADYELYKDQLDY"
     gene            1320..2099
                     /locus_tag="PXC99_002415"
     CDS             1320..2099
                     /locus_tag="PXC99_002415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HDL5418818.1"
                     /translation="MRKFKSLATLVLAGLFVAGCSNSNKELEQSNVQDLYGKGQTYLQ
                     DGDYNSAIRYLEAVGTKGGQYSGLGEQTQLSLIYAQYKVGEYYKALDAAERFARSYPN
                     AANMDYVFYLAGLSNARLSDNFIQDFFGVNRASRAVDNVRNAYGNFQTIVQRYPQSQY
                     AQDAQNWMNYLFNRLAEHELAVVKFYDERNAYVAVVNRIEEMLRFYPNTLATKQALPY
                     LKEAYKQMNIPDAEQKTELLIQEYESKELPNPEKLKYGEQF"
     gene            2172..3203
                     /gene="tsaD"
                     /locus_tag="PXC99_002416"
     CDS             2172..3203
                     /gene="tsaD"
                     /locus_tag="PXC99_002416"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HDL5418819.1"
                     /translation="MRILGIETSCDETGVAIYDEDKGLVANQLYSQIDMHADYGGVVP
                     ELASRDHIRKTLPLIQEALKEANLQPSDIDGIAYTAGPGLVGALLVGSTIARSLAYAW
                     NVPALGVHHMEGHLLAPMLEENAPEFPFVALLISGGHTQLVKVDGVGQYELLGESIDD
                     AAGEAFDKTGKLLGLDYPAGVAMSKLAESGTPNRFKFPRPMTDRPGLDFSFSGLKTFA
                     ANTIKANLNENGELDEQTKCDIAHAFQQAVVDTILIKCKRALEQTGYKRLVMAGGVSA
                     NKQLRADLAEMMKKLKGEVFYPRPQFCTDNGAMIAYTGFLRLKNDEQTDLSISVKPRW
                     AMTELPPIN"
     gene            3285..>3703
                     /locus_tag="PXC99_002417"
     CDS             3285..>3703
                     /locus_tag="PXC99_002417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HDL5418820.1"
                     /translation="MNNYVISLTSAQERRKHIEAEFGKQNIPFQFFDAITPDLIKEKA
                     KAFNIDISNTNLTKGEIACALSHIALWHLAKQQNLDYICIFEDDIYLGNNAFELLKTN
                     YIPENTHIVKLETLPFDRINRFNKTEKYILNRRLFKL"
BASE COUNT         1146 a          765 c          706 g         1086 t
ORIGIN      
        1 tattgtgcag cctgctgaat tttatcgccc gctttttcaa catcctcacc aacaccatca
       61 acggtattac acgcagtcaa gaaagttgca gctgctaaaa tagttaatac taattttttc
      121 atagaaagct ccttttttgt tgtttactta tgaaaacgat ttcaatatag caactttaca
      181 ttatttaagc aacacctaaa cttaataatc taattgatct ttataaagct cataatccgc
      241 ttttagtgcc tgaatcaatt caataaaatc atcaggtaac ggggcgtgcc actccatcat
      301 ttcaccagta atcggatgct ctaatctcaa cattgtggcg tgtaaggctt ggcgttggaa
      361 gcctcgtaac accgataaaa acgagtcact cgcaccttta ggtgggcgag gtctaccgcc
      421 atagagctga tcacctaata atgggtgagc aatatgcgcc atatgtaccc gaatttggtg
      481 agtacgccct gtttctaatc ttaaacgtaa acgtgtgtaa ttacgaaaac gctccataat
      541 acgataatgc gtaaccgccg gttttcccat tgggtgaaca gccattgccg tacgtttagt
      601 tgggtggcga gccattggct catcaacttt tccgccctgt gtcataatgc cgctggcaat
      661 cgcttcatat tcacgggtaa tacgacgttt ttgtaatgcg gttactaagt gagtctgtgc
      721 cggaatgttt ttagccacta ccattaagcc tgtcgtgtct ttatccaatc ggtgaacaat
      781 ccctgctcga ggcacttctg caatcggtgg ataataatgt agcaaagcat tcagcactgt
      841 accgtccgga ttaccagccc ctgggtgaac cactaaatcc ttcggtttat taatgacgat
      901 aatatcgtca tcttcataca caatatttag aggaatatct tgaggctcaa aacgaatttc
      961 ctcttctatt tcagcggtaa tttcaacagt ttcaccacca aatacttttt cccttgcttt
     1021 attcacgata ttgccattaa ctttcactag atcactttca atccacactt taatgcgtga
     1081 acgagaatag tccggaaaaa gttgtgccag agcctgatct aggcgagcac ctagtaaatc
     1141 tgcagtaatt tctgctgtta aaatcttttg ttgagtcatt aaaccataaa tcctaattag
     1201 tcatttgctt acttgcgtga tgttatatag aatagcgaga tgaacttcat aagttattct
     1261 tagtcagagg acattgtaca ttaacttttc gtcctagaca ctttttatag gtaaaacata
     1321 tgcgtaaatt taaatctctt gccacattag tattagccgg actgtttgtt gcaggttgtt
     1381 caaattcaaa taaagaatta gaacaatcca acgttcaaga tctttatggc aaaggtcaga
     1441 cctatttaca agatggagat tataattctg ccattcgcta cttagaagcg gttggaacca
     1501 aaggaggcca atattcagga cttggtgagc aaacccaact aagtttaatt tatgctcaat
     1561 ataaagttgg cgaatactat aaagcacttg atgccgcaga acgttttgct cgctcttacc
     1621 cgaatgcagc taatatggat tacgtattct atctagcagg attatcaaat gcacgtctaa
     1681 gtgataattt tattcaagac ttctttggtg taaatcgcgc ctctcgagcc gtagataatg
     1741 ttcgtaatgc ttacggtaac ttccaaacta ttgtacagcg ctaccctcaa agccaatatg
     1801 cacaagatgc tcaaaattgg atgaattact tatttaaccg tttagcggaa cacgaattag
     1861 ccgttgttaa attttatgat gaacgtaatg cctatgtggc tgtagtaaac cgtatcgaag
     1921 aaatgttgcg tttttacccg aatacactgg caaccaaaca agcattgcca tacttaaaag
     1981 aagcatataa gcaaatgaat atcccagatg cagagcaaaa aacggaactc ttgatccaag
     2041 aatatgaaag caaagagcta ccgaatcctg aaaaactgaa gtatggcgaa caattctagt
     2101 cgtacagaga ataatgtgag gggcgttctt cgcccctttt ggttttctaa cttattttga
     2161 cttctccaac tatgcgaatt ttaggtattg aaacctcttg tgatgaaacc ggtgttgcca
     2221 tttatgatga agacaaaggc ttagtggcaa accagcttta tagccaaatt gatatgcacg
     2281 ccgattacgg tggcgtagtc cctgaactgg cttctcgaga ccatatccgt aaaacgttgc
     2341 cactaattca agaagcctta aaagaggcca atctgcaacc ctcggatatt gacggcattg
     2401 cctatactgc cggcccaggc ttggtcgggg ctttattggt cggctcaacc attgcccgtt
     2461 cgctggctta tgcttggaat gttccggcat tgggcgttca ccatatggaa gggcatttac
     2521 ttgccccaat gttggaagaa aatgcccctg aatttccgtt tgtggcatta ttgatttcag
     2581 gtggacacac ccaactggta aaagttgacg gcgttgggca atacgaacta ctcggggaat
     2641 caattgatga tgctgccggt gaagcctttg acaaaacagg caaactactc ggtttggatt
     2701 accctgccgg tgtagcgatg tcaaaattag ccgaatccgg cacgccaaat cgttttaaat
     2761 tccctcgtcc aatgaccgac agaccgggac tggatttcag tttctccggt ttaaaaacct
     2821 ttgctgcgaa tacgattaaa gccaatctta atgaaaatgg tgaactcgat gagcaaacca
     2881 aatgcgatat tgcccacgca ttccaacaag ccgtggttga tactatttta attaaatgca
     2941 agcgagcgtt agagcaaacc ggctataaac gcttagtaat ggcaggcggc gtaagtgcca
     3001 ataaacaatt acgagcagac cttgcggaaa tgatgaaaaa attaaaaggc gaagtattct
     3061 accctcgccc acaattttgc actgacaacg gcgcaatgat tgcctacact ggctttcttc
     3121 gcttaaaaaa cgatgaacaa accgacttaa gcattagcgt aaaaccccgc tgggctatga
     3181 ccgaattacc accgattaat taacctttca agcggtgaaa tttcttgtta attttgcaaa
     3241 aatttaatca aaaataaccg cttgctatat gatagattaa atttatgaat aattatgtaa
     3301 ttagcctaac ctccgcacag gagcgtagaa aacatattga agctgaattc ggcaaacaaa
     3361 atattccttt tcaatttttc gatgcgatta cgccggattt aattaaagaa aaagccaaag
     3421 catttaatat tgacatttca aatacaaact taacaaaagg tgaaatagcc tgtgctttga
     3481 gtcatattgc attatggcat ttagccaaac aacagaattt ggattatatt tgtatttttg
     3541 aagatgatat ttatttaggt aataatgcat ttgaattact aaaaacaaat tatataccag
     3601 aaaatactca tattgttaaa ttagagacac taccatttga tagaataaat cgttttaaca
     3661 aaaccgagaa atacatatta aatagaaggc tttttaaatt aaa
//
LOCUS       DANLVT010000172         3664 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.172, whole genome shotgun sequence.
ACCESSION   DANLVT010000172 DANLVT010000000
VERSION     DANLVT010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3664)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3664)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3664
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.172"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..1016)
                     /locus_tag="PXC99_002418"
     CDS             complement(<1..1016)
                     /locus_tag="PXC99_002418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS O-antigen chain length determinant protein
                     WzzB"
                     /protein_id="HDL5418821.1"
                     /translation="MADSVKSHEQSSDEIDLIEIFRALWDKKWWIVITTFITTLLAGI
                     YAFTAKEQWTSKATVIAPKLTELGEYLNVRREYSRILRVDPVDPNALSASLFNNFNRL
                     AQSQDTKNEFFITSNVYKTLAEGKDEQGQRTVLSNLSNENTSFIIPDAKKDPNAIGRT
                     LSFSAETPMEAQDTLGKLVQFINSKAFAVELEDFLVDFQNVLTALQYEKSLIQEDLSV
                     NKSVQLENLNKAYETAQKAGIKEYSKAFNQSDASNIAAALSDTKISLSDSKLADSSYL
                     FMLGEKYLKAQIDVANEKGVVYPPRYYQIDYQLKQLEPLFEKTKTVKTQTFSYQASPD
                     YPVI"
     gene            1165..1506
                     /gene="erpA"
                     /locus_tag="PXC99_002419"
     CDS             1165..1506
                     /gene="erpA"
                     /locus_tag="PXC99_002419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005706127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HDL5418822.1"
                     /translation="MSDIQIPLIFTDAAARKVKSLIEGEENPNLRLRVYITGGGCSGF
                     QYGFTFDDQVNEGDLTIENQSVGLVVDPMSLQYLIGGTVDYTEGLDGSRFVVNNPNAS
                     STCGCGSSFSI"
     gene            complement(1611..1934)
                     /gene="yidD"
                     /locus_tag="PXC99_002420"
     CDS             complement(1611..1934)
                     /gene="yidD"
                     /locus_tag="PXC99_002420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HDL5418823.1"
                     /translation="MVKTHSPEQKAGTTESINQPPRLSLLAKILLLPIYFYRYAISPL
                     IGPRCRFYPTCSTYAVEAIKIHGAIKGGYLAFKRILRCNPLSEGGEDPVPLCCKGNCK
                     HNDKK"
     gene            complement(1883..2257)
                     /gene="rnpA"
                     /locus_tag="PXC99_002421"
     CDS             complement(1883..2257)
                     /gene="rnpA"
                     /locus_tag="PXC99_002421"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HDL5418824.1"
                     /translation="MKKLNFSRELRLLAPVQFKAVFEEPLRASTPQMTLLARENNLEN
                     PRLGLTVAKKHLKRAHDRNRIKRIVRESFRLKQHELPNFDFVFVAKGGIGKLDNATLF
                     ETLEKLWSRHIRLSKKPAQQNP"
     gene            complement(2293..2427)
                     /gene="rpmH"
                     /locus_tag="PXC99_002422"
     CDS             complement(2293..2427)
                     /gene="rpmH"
                     /locus_tag="PXC99_002422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011508608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HDL5418825.1"
                     /translation="MKRTFQPSVLKRARTHGFRARMATKNGRQVLARRRAKGRKSLSA
                     "
     gene            2664..3626
                     /gene="hemH"
                     /locus_tag="PXC99_002423"
     CDS             2664..3626
                     /gene="hemH"
                     /locus_tag="PXC99_002423"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HDL5418826.1"
                     /translation="MNQPQQIGILLANLGTPDEPTPSAVKRYLKQFLSDPRVIDLPKF
                     KWQAILNCIILPRRSPKVAKLYQSVWSEEGSPLLAISRQQQRAVQRYFDAKGKNVVVE
                     LGMSYGNPSIESATDNLIKQGVERIIVLPLYPQYSSTTTASVFDAFANGLKAQRKIVP
                     FDFIHSYHNDPLYIQALANSIDVKPDELLLFSFHGIPKRYETEGDFYAKHCQETAELV
                     AEKLGLPREKWYLSFQSRFGDEEWLQPYTDQTLESFPQKGIKKVAVVCPGFSADCLET
                     LEEITEENRENFEHAGGESYRYIPALNASGDHIKALVKLIEAKI"
BASE COUNT         1110 a          696 c          722 g         1136 t
ORIGIN      
        1 tttattacag gataatccgg cgaagcttgg taactaaaag tttgtgtttt aactgtcttt
       61 gttttttcaa ataacggctc tagctgttta agttggtaat caatttgata ataacgtggt
      121 ggataaacaa cacctttctc attagccaca tcaatttgag cctttaggta tttttcccct
      181 aacataaata aatatgaact atctgctaat tttgaatcag aaagggagat tttagtatca
      241 cttaaagctg ctgcaatatt tgatgcatct gattgattaa atgcttttga atattcttta
      301 atacctgctt tttgtgcagt ttcataggct ttatttaagt tttccaactg aaccgactta
      361 ttcacagata aatcttcctg aattaatgat ttttcatatt gtaatgcagt aagcacattt
      421 tggaaatcga ctagaaaatc ttctaattca acagcaaatg ctttgctatt aatgaattga
      481 accaacttac caagggtgtc ctgcgcctcc ataggtgtct ctgcagaaaa agatagtgta
      541 cgacctattg cattaggatc tttctttgca tcaggaataa taaagctggt attttcatta
      601 ctcaaattgg ataaaactgt gcgttgcccc tgctcatctt ttccttcagc taacgtctta
      661 tacacattgg aagtgataaa aaattcattt ttagtatctt gagattgtgc taatcggtta
      721 aaattgttga acaaactcgc agacaatgca tttggatcaa caggatctac acgcaaaatc
      781 cgactatatt ctctgcgaac atttaaatac tcacctaact ctgttaattt aggggcaata
      841 actgttgcct tagacgtcca ttgctctttt gcagtaaatg cataaatacc agcaagtaat
      901 gtggtaatga atgttgttat aacaatccac cattttttat cccatagagc acgaaaaatc
      961 tcaattaaat caatctcatc cgagctttgc tcatgacttt ttactgaatc tgccatagtt
     1021 tcctctaaaa tttgcatgtt tctgtacagc attatacata attttcttat ttccactgca
     1081 ttcatttact cttttttaag attgcacttc ctatgtaatt attagataat atccaatcac
     1141 agtaaaattt tgatctaaaa caaaatgagc gatattcaaa ttcctttaat ctttactgat
     1201 gcggcggctc gtaaagtaaa aagcttaatt gagggcgaag agaacccgaa tcttcgcttg
     1261 cgtgtgtata ttacgggtgg gggctgtagt ggattccagt atgggttcac ctttgatgat
     1321 caagtcaatg agggagacct taccattgag aatcaaagcg ttggcttggt ggttgacccg
     1381 atgagcctac aatatttaat tggtggcacg gtggattata ccgaagggct ggacggctca
     1441 cgttttgtcg tgaataatcc aaatgcaagc tcaacctgtg gttgtggttc ttcctttagc
     1501 atttaattca ctcgaattat tgccttattc aatatcagtc tcacaagtaa attttttact
     1561 aaaaatgacc gtttgtatta aacaaaatag cctaacttat tgagtttagg ctatttttta
     1621 tcattatgtt tgcagttgcc tttacaacaa agtgggacag gatcttcgcc tccctcactc
     1681 aaagggttgc aacgcagaat acgcttaaac gctaaatacc cacctttaat tgctccgtgg
     1741 attttaatcg cttcgaccgc ataggtggag caggttgggt aaaatcggca acgtgggcca
     1801 atcaatgggc tgatagcata gcgatagaaa taaatcggta gcaatagaat tttggctaat
     1861 aggctgagac gaggtggctg atttatggat tctgttgtgc cggctttttg ctcaggcgaa
     1921 tgtgtcttga ccatagtttt tccaatgttt caaacagcgt tgcgttgtct aatttgccaa
     1981 tgccgccttt tgccacaaat acaaaatcga aattcggcaa ttcgtgttgc ttgaggcgaa
     2041 aactttcacg cactatccgc ttaatgcgat tacggtcgtg agcccgtttt aaatgttttt
     2101 tggcaacagt taagcctaga cgaggatttt ctagattatt ctctctagca agaagagtca
     2161 tttggggtgt gctggctcga agtggctctt caaacaccgc cttaaattga acgggagcta
     2221 acaaacgtag ctcccgagag aaatttagct tcttcacact taatcagaaa ggtgttttgg
     2281 ctggttctgc aattatgcag ataaagattt acgaccttta gcacgacgac gcgctaacac
     2341 ttgacgaccg tttttagtag ccatacgagc acggaaaccg tgagtacgag cacgttttaa
     2401 tactgatggt tgaaatgtac gtttcattgc ttatctacct aaaatttaaa aagttggcat
     2461 aaaatggttt ctgccaaaca aggaccataa aaaagagttg caattctaca ggcaattaaa
     2521 ataaaaagca agaaacaatc caagcacaac tcgggttgtt tgcaaaattt ttgaaaaata
     2581 cgaccgcttg ttataatcgc agaaatttat attggtttgt ggcataatcg aaaaaatatt
     2641 aactattgat gagaaataga acaatgaatc aaccccaaca aataggtatt ttgctggcta
     2701 atttaggtac gccagatgaa cccacgccaa gtgcggtgaa gcgttattta aagcaatttt
     2761 taagcgatcc tcgtgtgatc gatctaccaa aatttaaatg gcaagcaatc ctaaactgca
     2821 tcattttgcc aagacgttcg ccaaaagtgg caaaattata tcaatcagta tggagcgaag
     2881 aaggctcacc gttattggcg atttctcggc aacaacaacg agcggtacaa cgctattttg
     2941 atgccaaagg caaaaatgtg gtggtggaat tgggaatgtc ttacggcaat ccaagtattg
     3001 aaagtgcgac cgataacctc atcaagcagg gggttgagcg gattattgtg ctaccgcttt
     3061 atccgcaata cagtagcact actaccgctt cggtgtttga tgcgtttgcc aacggtttaa
     3121 aagcacagcg taaaatcgtg ccgtttgatt ttattcacag ctatcataac gatccgcttt
     3181 atattcaagc gttggctaac tctattgatg ttaaacctga cgagttatta ctgttttcat
     3241 ttcacggcat tcctaaacgt tatgaaacgg aaggtgattt ttacgccaag cattgccaag
     3301 aaacagcaga attagtggct gaaaagctag gtctgccaag agaaaaatgg tatttgtctt
     3361 tccagtcccg ttttggtgat gaagagtggc tacagcctta taccgatcaa acccttgaaa
     3421 gcttcccaca aaaagggata aaaaaagtgg ctgtcgtttg cccgggcttt tcagcagatt
     3481 gtttggaaac cttagaagaa attacagaag aaaaccgcga gaactttgaa catgccggcg
     3541 gagaatctta tcgctacatt ccagcgttaa atgcgagtgg cgatcatatc aaggcattag
     3601 taaaattaat cgaagcgaaa atataatata atttgggcgg ataataaatc cgcccatttt
     3661 tatc
//
LOCUS       DANLVT010000173         3553 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.173, whole genome shotgun sequence.
ACCESSION   DANLVT010000173 DANLVT010000000
VERSION     DANLVT010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3553)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3553)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3553
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.173"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(15..2867)
                     /locus_tag="PXC99_002424"
     CDS             complement(15..2867)
                     /locus_tag="PXC99_002424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL5418827.1"
                     /translation="MVQAVSFSHFFAIHYFYFFLHKTKGQCTAKPLFSILLFHLFPKN
                     SAKFLLFFYFLVLMVLYSNEVANGKLLITGGTNLNGTLSAEGTSEIILSGRPTPHAYD
                     KVANKEVLIEGDWINRSFNATIFAAKDNGKLEISRNVANINGNFNLTDNATAQIGFTQ
                     GTSQACIRSDRTGVATCNINATLSETDLNSWERTKVAGNVSLADNSTFSLGSKADLTG
                     SITAQESTKVQLNDGSIANLTGLSTTGIFNGANGSTVNLSGVWTTLTNTVVDVLNVAN
                     GSQIHLNTPTATKQNTLTANTLTGNGIFKFVADLTKTASDIVTIKDTASGQFSIEIST
                     NGSAHSAQKIKLFETTNEEDFSLNLANEVRSGEYRYHLLKEGNVYYLNPEKEEEPKIT
                     QKGPSETADPLPEYTGDIEHSEKGPGETADPLPEYTGDIEHSEKGSGETAEPLPKYNG
                     NAHLIASELTAQTNAVLGVTTVLDHVIHSEGTQKQNTLTANTLTGNGIFKFVADLTKT
                     ASDIVTIKDTASGQFSIEISTNGSAHSAQKIKLFETTNEEDFSLNLANEVHSGEYRYH
                     LLKEGNVYYLNPEKEEEPKITQKGPSETADPLPEYTGDIEYSEKGPGETADPLPEYTG
                     DIEHSEKGPGETADPLPEYTGDIEHSEKGSGETAEPLPKYNGNAHLIASELTAQTNAV
                     LGVTTALDHVIHSEGTQNWKVWSKTDYQTTEHRSAGYGFNQDANVIHLGLEKALDNQV
                     TLGMILSQSKARNNFDHYYSGKGRLTMLSMYAKKTWQNGVFVAIDTGFGKASNRLTYQ
                     ANTVKLDRSVFVTGLSIGKAWESANVNIIPSFSARYHHLSSAGNQLVDAKIETNAVDL
                     LALQAGLSINKTLELNGLQIKPEIGSYFVDASHGKLRTRFNNLQIEQQMGRYFKQEAG
                     ISANYRNINAGIQAGFLTGNTLNKQRYISFKVTYEW"
     gene            complement(2915..>3553)
                     /locus_tag="PXC99_002425"
     CDS             complement(2915..>3553)
                     /locus_tag="PXC99_002425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5418828.1"
                     /translation="EVAGMGNLPEQPSNVTRRATKNNWLKRQIEGKRGVAFEYHYSSL
                     PISVQQELGFAQTAVKEEPRTLVAAQTADEMERVPFYNVQASAGFGAFNSEVYAPDDY
                     IGLSKRWLDVRGFYLSYLAFITASGDSMYPTISDGDMLLVNRATTQPKDGKIYVFRQG
                     EQLWVKRVQGIMGGIRLISDNKELYSPIDVIFDETLDFEVIGQVVYIGHEMI"
BASE COUNT          936 a          735 c          693 g         1189 t
ORIGIN      
        1 cttaatctca atatttacca ttcatatgta actttgaacg agatataacg ctgtttattt
       61 agcgtattcc ccgttaagaa acctgcctga attcctgcgt ttatattgcg ataattagcg
      121 gatatacctg cttcttgttt aaaataacgc cccatttgct gctctatttg taaattattg
      181 aaacgtgttc ttaatttccc atggcttgca tcaacaaaat agctacctat ttccggtttt
      241 atttgcaggc catttagttc aagcgtttta ttaattgaca gaccagcttg aagagcgaga
      301 agatcaacag cgtttgtttc gatttttgca tctacaagtt gattacctgc tgaagataaa
      361 tgatgataac gggcgctaaa tgatgggatt atattcacgt ttgcagattc ccatgcttta
      421 ccgatactaa gccctgttac aaatactgaa cgatctaatt ttactgtatt tgcttgataa
      481 gttaagcgat tgcttgcttt cccaaaaccg gtatctatcg caacaaaaac accattttgc
      541 catgttttct tcgcatacat tgatagcatt gttaagcgac ctttaccgct ataataatgg
      601 tcaaaattat ttctcgcttt tgattgagat aatatcatac caagtgtgac ctgattatct
      661 aaggctttct ctaatcctag atggataacg ttcgcatctt ggttaaatcc atatccggca
      721 gagcgatgct ctgtcgtttg ataatctgtt ttagaccata ctttccaatt ttgggtccct
      781 tccgaatgaa ttacatgatc taatgctgta gttacaccta atacagcatt agtttgcgca
      841 gttaactcgg atgcgatcaa atgtgcattt ccattgtatt taggtaatgg ctcagcggtt
      901 tcacccgatc ctttttctga atgctcaatg tctcctgtgt attcaggtaa cggatcagca
      961 gtttcacccg gccctttttc cgaatgctca atgtctcctg tgtattcagg taacggatca
     1021 gcagtttcac ccggcccttt ttcagaatac tcaatatccc cggtgtattc aggtaatggg
     1081 tcagcggttt cacttggccc tttttgagta attttaggtt cttcctcttt ctctggattg
     1141 aggtaataca cattcccttc tttgagtaaa tggtagcgat attcgcctga gtgcacttca
     1201 tttgctaaat taagagaaaa gtcttcttca tttgttgttt caaataattt aatcttttgg
     1261 gctgaatggg cgctaccatt tgtgctaatt tctatcgaaa attgaccgct tgcggtgtct
     1321 ttaattgtga ctatatcgct cgctgttttc gtcagatcag cgacaaattt aaatatgccg
     1381 ttccctgtga gggtattagc ggtaagcgta ttctgttttt gggtcccttc cgaatgaatt
     1441 acatgatcta atactgtagt tacacctaat acagcattag tttgcgcagt taactcggat
     1501 gcgatcaaat gtgcatttcc attgtattta ggtaatggct cagcggtttc acccgatcct
     1561 ttttctgaat gctcaatgtc gcctgtgtat tcaggtaacg gatcagcagt ttcacccggc
     1621 cctttttcag aatgctcaat atccccggtg tattcaggta atgggtcagc ggtttcactt
     1681 ggcccttttt gagtaatttt aggttcttcc tctttctctg gattgaggta atacacattc
     1741 ccttctttga gtaaatggta gcgatattcg cctgagcgca cttcatttgc taaattaaga
     1801 gaaaagtctt cttcatttgt tgtttcaaat aatttaatct tttgggctga atgggcgcta
     1861 ccatttgtgc taatttctat cgaaaattga ccgcttgcgg tgtctttaat tgtgactata
     1921 tcgctcgctg ttttcgtcag atcagcgaca aatttaaaga tgccgttccc tgtgagggta
     1981 ttagcggtaa gcgtattctg ttttgttgca gttggagtgt ttaaatggat ttggctacca
     2041 tttgcgacat tcaagacatc tacaacagtg ttggttaagg ttgtccatac cccagaaaga
     2101 ttaacggttg aaccattggc gccattaaat attcctgttg tactcaagcc ggttaaatta
     2161 gcaatacttc catcattaag ttgaacctta gtggactcct gagctgtaat tgagccagtt
     2221 aagtctgctt tactgcctaa cgaaaatgtt gaattgtcag ctaaagagac attgccagcc
     2281 actttggttc tctcccagct gtttaaatca gtctctgata aagtagcgtt aatattacag
     2341 gttgctacgc ctgtgcggtc agagcgaata catgcttgtg aggtaccttg ggtaaaacca
     2401 atttgagcgg tagcattatc tgttaaatta aaattaccgt taatattggc aacattacgg
     2461 ctgatttcaa gcttgccatt gtctttagct gcaaagattg ttgcgttgaa cgatcggttg
     2521 atccagtcgc cttcaatcag gacttcttta ttcgctactt tatcataggc atgaggtgtt
     2581 ggacggcccg ataaaatgat ttcgcttgta ccttctgcag aaagcgtacc gttgaggttc
     2641 gttcccccag tgataagcaa tttgccgttt gctacttcat tactgtatag aaccattaaa
     2701 actaagaaat aaaagaataa taggaatttg gcggaatttt tcgggaataa gtgaaacaga
     2761 agtattgaaa acaggggctt tgcggtgcat tgcccctttg ttttatgtag aaaaaagtaa
     2821 aaataatgaa ttgcgaaaaa atggctaaaa ctaaccgctt gtaccattaa aacaacgaaa
     2881 aagtaaaaat gatttaagta gctttaaatg gcgtttaaat catctcgtgt ccaatgtaca
     2941 caacctgccc gataacctca aaatctaacg tttcatcaaa aatcacatca atagggctgt
     3001 atagctcttt attatcgctg attaagcgaa taccgcccat aatgccttgc acacgtttaa
     3061 cccaaagctg ctcgccttgg cggaacacat aaattttacc gtctttaggc tgggtggtgg
     3121 ctcggtttac caatagcata tcgccatcac tgatggttgg gtacattgaa tcacctgaag
     3181 cggtaataaa tgcaagatag ctcaaataga agccacgcac atctagccat cgtttactta
     3241 gcccaatata gtcatcaggg gcatacacct cgctattgaa agcaccaaag cctgctgaag
     3301 cctgtacatt ataaaacggc acacgttcca tttcatctgc agtttgggct gccactaatg
     3361 ttctaggctc ttcttttact gccgtttgag caaagcctaa ctcttgctgc acgcttattg
     3421 ggagagagct gtagtggtat tcaaaagcaa cccccctttt tccctctatt tgtcttttga
     3481 gccaattatt tttggtagct cttcttgtta catttgatgg ttgttcaggt aaatttccca
     3541 ttccagctac ttc
//
LOCUS       DANLVT010000174         3523 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.174, whole genome shotgun sequence.
ACCESSION   DANLVT010000174 DANLVT010000000
VERSION     DANLVT010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3523)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3523)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3523
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.174"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            32..2008
                     /gene="cpdB"
                     /locus_tag="PXC99_002426"
     CDS             32..2008
                     /gene="cpdB"
                     /locus_tag="PXC99_002426"
                     /EC_number="3.1.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2',3'-cyclic-nucleotide 2'-phosphodiesterase"
                     /protein_id="HDL5418829.1"
                     /translation="MLNRRKFIQLGATAMLVLGTQPSAFAQTAKNKAGLRVIATTDIH
                     GFLTDFDYYKDAPTEKFGFTRTASLIKQARAEVKNSVLVDNGDLIQGNPISDYQSTKG
                     AKEGKPEPSIMALNAMQYEVGTLGNHEFNYGLSYLDNAIKQAKFPIVNANIVKPGTDE
                     PFFTPYVIQQKEIVDEKGNKHTIKIGYIGFVPPQVMIWDKANLEGKVEARDIVKTAQK
                     YVPIVKKEGADIVVALAHTGPSDEPYKEGAENCAFYLADVKGIDAVIFGHSHRLFPNK
                     EFANSPNADIAKGTMKGVPESMAGYWGNNISVIDLSLAENDGKWGVVDGRAELRPIYN
                     TEEKKATVENHPEIVALLKETHEATRQFVSQPIGKATDNMYSYLALVQDDPTIQIVNQ
                     AQKAYVENVVKGLPELAGLPILSAGAPFKAGGRKNDPTGYTEVDKGELTFRNAADLYL
                     YPNTLVVVKATGAELKEWLECSAGMFKQIDVASDKPQYLLDWTGFRTYNYDVIDGVSY
                     QFDITQPARYDGECKLINPNSHRVVNLTFDGKPVDPKQEFLIATNNYRAYGAKFPGTG
                     DKHIVFAAPDENRQVLANYITTESKAHGQVSPKADNNWRIAPISSNAKLDIRFETSPT
                     DKAKAFIKENAQYPMEYIENDETGFAVYRIDLTK"
     gene            complement(2081..3520)
                     /locus_tag="PXC99_002427"
     CDS             complement(2081..3520)
                     /locus_tag="PXC99_002427"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HDL5418830.1"
                     /translation="MPSLLCDFYKTSHRIQYPEGSQFLYSTFTPRSNIYAPFVTRVVS
                     FGFQAFILKYLIHYFNDNFFSRSQHDVVSEYTQFISDTLNIEDSGEHIAQLHQLGYLP
                     IRIKAIPEGKSVAVKVPLMTIENTHSSFFWLTNYLETLINVSLWQPITSASIAFAYRK
                     ALAEFSEQTCDDNSHLPFQAHDFSMRGMSSLESAESSGAGHLTSFLGTDTIPAISFVT
                     AYYGSQHLIGTSIPASEHSVMSSHGVDELPTFRYLMAKYPNNMLSIVADTTDFWHNIT
                     VNLPLLKQEILARPESAKLVIRPDSGDFFTIICGNNSSPVEHERKGLIECLWDIFGGS
                     INQKGYKVLNPHIGAIYGDGVTYDKMIRILEGLTAKGFASSNIVFGVGAQTYQRNTRD
                     TLGFAIKATSITINGVEKAIFKAPKTDNGLKKSQKGRVKVISYDHYVDELTALDDFSD
                     DLLEVVFENGKLVKSTNFDEIRQNIAQQF"
BASE COUNT         1175 a          664 c          714 g          970 t
ORIGIN      
        1 ttaccctttc atttcattaa ggagatattt tatgttaaat agaagaaaat ttatccagct
       61 tggtgcaact gcaatgcttg tattggggac acaaccgtct gcatttgcac aaacagccaa
      121 aaataaagct ggcttgcgtg tcatcgccac tacggatatt cacggtttct taactgattt
      181 tgattattac aaagatgctc caacagaaaa gtttggtttt acccgtacgg caagcctaat
      241 taaacaagct agagcagaag ttaaaaacag tgtgttagtc gataatggtg acttaattca
      301 aggtaatcct atttctgact accagtcaac caaaggtgca aaagagggca aacctgaacc
      361 ttcgattatg gcattaaatg cgatgcaata tgaagtcgga acgctgggaa atcatgaatt
      421 taactacggt ttaagctatt tagataatgc tattaagcaa gcaaaattcc ctattgtcaa
      481 tgcaaacatt gtgaagccgg ggacagatga accattcttt acaccttatg ttattcaaca
      541 aaaagaaatt gtagatgaaa aagggaataa gcataccatt aagattggtt atatcggttt
      601 tgtaccacca caagtgatga tttgggataa agctaatctt gaaggaaaag ttgaagctcg
      661 agatattgtg aagaccgcac aaaaatatgt gcctatagta aaaaaagaag gggcagatat
      721 tgtcgttgca ttggcacata ccggcccttc agacgaaccc tataaagaag gcgctgagaa
      781 ctgtgcgttt tatctagctg atgtaaaagg tattgatgca gttattttcg ggcattcaca
      841 tcgcctgttc ccaaataaag aatttgcaaa ttcaccaaat gccgatattg caaaaggaac
      901 aatgaaaggc gtaccggaaa gtatggctgg ctactgggga aataacatca gtgtgattga
      961 tttaagcttg gccgaaaacg atggtaaatg gggcgttgtg gacggtagag cagagttgcg
     1021 tccaatttat aatacggaag agaaaaaagc aaccgttgag aaccaccctg aaatcgttgc
     1081 attattaaaa gaaacccatg aagcaacccg tcaatttgtg tctcaaccta tcggtaaagc
     1141 aactgataat atgtatagtt accttgcgtt agttcaagat gaccctacca ttcaaattgt
     1201 gaaccaagct caaaaagcgt atgtagaaaa tgtggtaaaa ggcttgccgg agcttgcagg
     1261 attaccaatt ctaagtgccg gagcaccgtt taaagccggt ggacgtaaaa atgacccgac
     1321 aggctatacc gaagtcgata aaggcgaatt aactttccgc aatgcggcag acttatacct
     1381 ttacccaaat accttagtgg tggttaaagc aacaggagca gaattaaaag agtggttaga
     1441 gtgcagtgca ggaatgttca aacaaattga tgtcgcttcg gataaaccgc aatatttact
     1501 ggattggaca ggtttccgca cctataacta cgatgtaatt gacggtgtca gctatcaatt
     1561 tgatataacc caaccggctc gttatgacgg cgagtgcaaa ttgatcaacc ctaattcgca
     1621 ccgtgtggtg aacttaacct ttgacggcaa accggttgat cctaaacaag aattcttaat
     1681 tgccaccaac aattaccgtg cttatggagc aaaattcccg ggaacaggcg ataaacatat
     1741 tgtgttcgcc gcaccggacg aaaaccgcca agtgttagcg aattatatta ccaccgaaag
     1801 taaagctcac gggcaggtaa gtccgaaagc ggataacaac tggcgtattg caccaattag
     1861 ctcaaatgca aaattggata ttcgttttga aacctctcca acagataaag ctaaagcttt
     1921 cattaaggaa aatgcacaat atccgatgga gtatatcgaa aacgatgaaa ccggcttcgc
     1981 agtttaccgt attgatttaa ccaaataatc agagctaaat acaagcggtc taatttgcaa
     2041 aaaaattaac aaatttgacc gcttgtttca ttccattttt ctaaaattgt tgtgctatat
     2101 tttgccgaat ttcatcaaaa ttggtcgatt tgaccaactt accattttca aaaaccacct
     2161 ctaaaagatc atctgaaaaa tcatccagtg cggttagctc gtcaacataa tgatcataag
     2221 agattacttt tactcgccct ttttgcgatt tttttaagcc gttatcggtt ttaggagctt
     2281 tgaaaattgc cttttcgaca ccgttaattg taattgaagt cgctttgatt gcaaaaccca
     2341 gcgtatcacg agtattgcgt tgataagttt gagccccaac gccaaacaca atattgctgg
     2401 aagcaaaacc ttttgccgtt aagccctcta aaatccgtat cattttatca taagtgacgc
     2461 cgtcaccata aattgcccca atatgcggat taagcacttt ataacctttt tggttaatac
     2521 taccaccaaa aatatcccac aaacactcaa tcagaccttt gcgttcgtgt tcaacggggg
     2581 aggaattgtt accgcaaata attgtaaaaa aatcaccgct atcagggcgg ataaccaatt
     2641 ttgctgattc cggtcgagct aaaatttctt gttttaataa tggcaaatta acggtgatgt
     2701 tatgccagaa atcggttgta tctgccacaa tagatagcat attatttgga tattttgcca
     2761 ttaaataacg gaaagtcggc agctcatcaa caccgtgtga actcatcacc gaatgttctg
     2821 atgccggaat agatgtaccg attaaatgtt gagaaccata ataggctgtc acgaatgaaa
     2881 ttgcaggaat ggtatctgtg cctaaaaatg aggttagatg tccggcaccg gagctttctg
     2941 ctgattctaa ggaactcatt ccacgcatag agaaatcgtg tgcctggaag ggtagatggc
     3001 tattatcatc acaggtttgc tctgaaaatt cggctagagc cttacgataa gcaaatgcaa
     3061 tggaagctga tgtaataggc tgccataatg acacattaat cagggtttcc aaataattag
     3121 tcagccaaaa aaagcttgag tgagtgtttt caattgtcat taaaggaact ttcactgcaa
     3181 cagattttcc ttctggaata gctttaattc tgataggtaa gtaaccgagc tgatgcaatt
     3241 gtgcaatatg ttcgccagag tcctcaatat tcaatgtgtc agaaataaat tgagtatatt
     3301 cagaaacaac gtcatgttgt gagcgagaaa aaaaattatc gttaaaataa tgaatcaagt
     3361 attttaaaat aaatgcctga aagccaaatg atacaacacg tgtaacaaat ggagcataaa
     3421 tattactacg aggtgtgaat gtactatata aaaactgaga accttcagga tattgaattc
     3481 gatgtgaagt tttataaaaa tcacataata gtgatggtat tgc
//
LOCUS       DANLVT010000175         3467 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.176, whole genome shotgun sequence.
ACCESSION   DANLVT010000175 DANLVT010000000
VERSION     DANLVT010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3467)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3467)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3467
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.176"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..416)
                     /locus_tag="PXC99_002428"
     CDS             complement(<1..416)
                     /locus_tag="PXC99_002428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin transporter"
                     /protein_id="HDL5418831.1"
                     /translation="MSIKKVTLASLILLGLTACSSGGSGSSSNNVAKPNTKPQTTQQQ
                     TDKAAAEKAAKDKAAKEKAEAERLAAEKAAKEKAEAERLAAEKAAKEKAEAERLAAEK
                     AAKEKAEAERLAAEKAAKEKAEAERLAAEKAAKEKA"
     gene            619..2073
                     /locus_tag="PXC99_002429"
     CDS             619..2073
                     /locus_tag="PXC99_002429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-histidine dipeptidase"
                     /protein_id="HDL5418832.1"
                     /translation="MSEISTLAPQLLWQWFDKACAIPHPSYHENELAEFIVNWAKSKN
                     FFVERDEVGNVLIRKPATKGMENRQTVALQAHLDMVPQANTGTVHDFTKDPIQPYIDG
                     EWVKAKGTTLGADNGIGLASCLAVLDSDDLAHPTIEVLLTMTEEAGMEGAIGLRPNWL
                     TADIMINTDTEENGEIYIGCAGGENVNVTLPIFLVPHQQDSAVTVTLKGLNGGHSGCD
                     IHTTRANAIKVFARILEQAHNEVEFQIAEIQGGSVRNAIPREAHATLVFSAKNQQKLT
                     ACLSQTAEQVKAELKIAEPNFQFLIEEAQLPEQAFDLASTARVIHFLNVMPNGVVRNS
                     DVVENVVETSLSIGVLNTEASEVKATILARSLIEGGKEEIRSKIRSLTALVGAEVEFS
                     GNYPGWEPNPNSKITPLTKAIYDEILGYESQIKVIHAGLECGLINKIYPNMDFVSIGP
                     TILNAHSPDEKVHIPAVEIYWKLLTKLLEQAPEK"
     gene            complement(2148..3437)
                     /locus_tag="PXC99_002430"
     CDS             complement(2148..3437)
                     /locus_tag="PXC99_002430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5418833.1"
                     /translation="MDIRQKIAHNKMTSFQWLVVGLTVLLNMLDGFDLMALAFTAKSI
                     REELQLDGAAIGSLMSAGLFGMAIGSLFLSPLADKFGRRPLLLIGTGLATLGMLLTYF
                     ATSAFEIGVWRVLTGLGVAAILTGTNVLVSEYSSQKWRGLAIAIYASGFGIGAMLGGM
                     SAVLLQGEYGWRAVFLVGSILTGAVFVLLFFVLPESVEFLISKHPVNAKARLNQIAVK
                     LGLGNGWELPEIEAKSKSKVAITRLFEPEYRRNTLLIWLAFIAISASFYFISSWTPAL
                     LEEAGMPKTQSQTVGMAISVGGTIGSLIFGFLVSRWAAKHILQAFSILAASAVVAFVF
                     AGNLGLAITLAILVGGLINGCITGLYTINPTLYAPDFRSTGVGTAIGVGRLGSIVSPT
                     LAGILLDAGWKKNELYLGAAVVLLIAAFTVHFLKQRK"
BASE COUNT         1012 a          802 c          720 g          933 t
ORIGIN      
        1 tccgctttct ctttcgccgc tttttctgcc gctaaacgtt ctgcttccgc tttctctttc
       61 gccgcttttt ccgccgctaa acgttctgct tcggcttttt ctttcgctgc tttttccgcc
      121 gctaaacgtt ccgcttcggc tttttctttc gctgcttttt ccgccgctaa acgttctgct
      181 tccgctttct ctttagctgc tttttctgct gctaaacgtt ctgcttctgc tttctctttc
      241 gctgccttgt cttttgctgc tttttctgct gccgctttat cggtttgttg ctgagtagtt
      301 tgcggtttag tattcggttt tgccacattg tttgagctac tgcccgaacc accactacta
      361 cacgccgtta aacccaataa aatcaaactg gctaaagtta cttttttgat agacataaaa
      421 tgttcctttt gtaagataaa caaaaataga tgtgtataaa acacacgcat attgtacaaa
      481 aaaaaaacaa ctcgtcatca agtacttttt aagatttttt tgttaaattt ctcctaaata
      541 ttctacaatg tcagaggtct atatcagctt gaatacaagc ggttattttt tcttaaaatt
      601 ttacaaaagg ggcttattat gtctgaaatc tcaacgctcg caccgcagct actttggcag
      661 tggtttgata aagcctgtgc tattccgcac ccgtcttacc acgaaaatga actggctgaa
      721 tttattgtga attgggcaaa atcgaaaaat ttctttgttg aacgtgatga agtgggtaat
      781 gtgttaatcc gtaaaccggc aactaaaggt atggaaaacc gccaaactgt cgctctgcaa
      841 gcccatcttg atatggtgcc acaagccaat accggcacgg ttcacgattt cactaaagat
      901 ccgattcagc cttatattga cggcgaatgg gtaaaagcca aaggcacaac attgggggca
      961 gataacggca ttggattggc ttcgtgcttg gcggtgttgg atagcgatga tttagcccac
     1021 ccaaccattg aagtgttgct cacaatgacc gaagaagccg gtatggaagg ggcgattggt
     1081 ttacgcccga actggctaac cgccgatatt atgattaaca ccgacaccga agaaaacggg
     1141 gaaatttaca tcggctgtgc aggtggggaa aatgtgaatg tgacactgcc aattttcttg
     1201 gtgcctcatc agcaagatag tgcagtaacc gttacgctta aaggcctaaa cggcgggcat
     1261 tcgggctgtg atattcacac cacccgagcg aatgcgatta aagtgttcgc ccgcattttg
     1321 gaacaagccc acaacgaagt ggaattccaa attgcagaaa ttcaaggcgg ttcggtgcgg
     1381 aatgccattc cacgagaagc ccacgcaacc ttggttttct ctgcaaaaaa tcagcaaaaa
     1441 ttaaccgctt gtttaagcca aaccgccgaa caagtaaaag cagaactcaa aattgccgag
     1501 ccaaacttcc aatttttaat tgaagaagct caactgcctg agcaagcctt tgaccttgcc
     1561 agcactgctc gagtaatcca tttcttaaat gtgatgccaa atggtgtggt gcgtaatagc
     1621 gatgtggtgg aaaatgtggt ggaaacctca ctcagtattg gtgtgcttaa caccgaagcg
     1681 agtgaggtga aagcgaccat tcttgcccgc tcattaattg agggcggaaa agaggaaatt
     1741 cgcagtaaaa tccgctcatt aaccgcatta gtgggagcag aagtggaatt ttcgggcaac
     1801 tacccgggct gggagccaaa cccaaattcc aaaatcacgc cattaaccaa agcgatttat
     1861 gatgaaattt taggttatga atctcaaatt aaagtgattc acgcagggct agaatgtggc
     1921 ttaatcaaca aaatctaccc gaatatggat tttgtctcga ttggaccaac tattctcaac
     1981 gcccattctc cggacgaaaa agtgcatatt ccggcagtgg agatttattg gaaactccta
     2041 accaaactac ttgaacaagc acctgagaaa taaatttaat caaaaaaatt atataatctt
     2101 gccccgtaat taattgaata aaacctcaat taattacggg gtagctctta ttttctctgt
     2161 tttaaaaaat gtaccgtgaa agcagcaatt aataagacga ctgctgcacc taaataaagc
     2221 tcgttctttt tccagccggc gtctaataaa atacctgcaa gagttgggga aacaattgag
     2281 cctaaacgcc ctacaccgat ggcggtgcct acgcccgtgc tgcggaaatc cggtgcgtat
     2341 agggttgggt taatggtata aagcccggta atgcagccgt taattaatcc gccaaccaaa
     2401 atggctagtg ttatcgcaag ccctaaattg ccggcaaaca caaaggcaac cacagcagat
     2461 gcagccagaa tactgaatgc ctgcaaaata tgttttgccg cccagcgact gactaaaaag
     2521 ccgaaaatta acgagccgat tgtaccacca actgaaattg ccattcccac agtttggctt
     2581 tgggttttag gcattccggc ttcttctaat agtgccggag tccaagagct gataaagtaa
     2641 aatgaggctg aaattgcaat aaaggcaagc caaattagca acgtattgcg gcgatattca
     2701 ggctcgaata aacgggtaat tgccactttg cttttacttt ttgcctcaat ttcaggaagt
     2761 tcccagccgt ttcctaagcc taatttaacg gcaatttgat ttaaacgagc tttagcattc
     2821 accgggtgtt ttgaaattaa aaattccacc gattcgggca atacaaagaa taataaaacg
     2881 aataccgcac cggttaaaat cgacccaacg aggaaaaccg cacgccagcc atattctcct
     2941 tgcaataaca ccgcagacat tccgcccagc attgcaccaa tcccaaagcc tgaggcataa
     3001 attgcaatcg ctaagccacg ccatttttgg ctggagtatt cactcactag cacattagtg
     3061 ccggttaaaa tggcggctac gcctaaaccg gttaaaacac gccatacacc aatttcaaac
     3121 gcagaagtag cgaaataagt taggagcatt cctaacgtgg ctaagcctgt gccgattaaa
     3181 agcaacgggc ggcgaccaaa tttatcagca agtggtgaaa gaaagagtga gcctatcgcc
     3241 ataccgaata aaccggcact cattaagctg ccgatggctg caccgtctaa ctgcaattct
     3301 tctcggatgc ttttggcggt aaaggcgagt gccattaaat caaagccgtc cagcatatta
     3361 agtaacaccg taagcccaac cactaaccat tggaatgaag tcattttgtt atgagcaatt
     3421 ttttgacgaa tatccataag ctccctctgc atcaaaattg ataaaat
//
LOCUS       DANLVT010000176         3350 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.177, whole genome shotgun sequence.
ACCESSION   DANLVT010000176 DANLVT010000000
VERSION     DANLVT010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3350)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3350)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3350
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.177"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            236..613
                     /locus_tag="PXC99_002431"
     CDS             236..613
                     /locus_tag="PXC99_002431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL5418834.1"
                     /translation="MDKSQGVVSVNIRGGSGFGRANNAVGPNYMGMLAGKYQFNDSTW
                     IGALFGHSWRKISQNYKIGGGRKVTDSSIDLSKIDDLDKESSTTSPFNAAHLKQKPMS
                     RMAKLEYGDKYQTITLLPKSGSG"
     gene            765..1457
                     /locus_tag="PXC99_002432"
     CDS             765..1457
                     /locus_tag="PXC99_002432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL5418835.1"
                     /translation="MAINNKATTLNLSNTFKVSPFKDGEWEAILGFNRLKNRYSKNRH
                     PAELNYNLENGETSENNDSVGMTAVRKSLYTSTFQPDGEQKFDTFYLDNHFNYGIWGL
                     DINANINTARFIGQRFKYFPFAIRELESDIRQASRNRQFEHLRSLQSQLDNLQKNIVH
                     IFQMRIFLMILNWESLTVLMSIFLIQQQENINELIIQQPCLLIFTIYSRPLLVILKHI
                     EPLILKKYSSLI"
     gene            1343..2119
                     /locus_tag="PXC99_002433"
     CDS             1343..2119
                     /locus_tag="PXC99_002433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL5418836.1"
                     /translation="MNYSATLSAYIHDLFTPFISYSQTHRAPNIKEIFFSNLGDYGVN
                     TALQPEQAKTTQFGINGFKERVFSEEDKLGFKVLFYNTHLKNYIYNVQHTAVGSAPSL
                     FIFHKNYEKPVNIKGIELEFSYDIGSFYGNLAYARQNTNQPVSFTDASSRVDAASHYG
                     FKTQGFGASKISALPRDYGSLELGTRWFDQRLQIGGVAKYYGKSKRIAIDEFNYTYYP
                     GTHIVKETHRLEETVNKQPIIVDFYVSYEPIKSLILKLEL"
     gene            2723..3217
                     /locus_tag="PXC99_002434"
     CDS             2723..3217
                     /locus_tag="PXC99_002434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5418837.1"
                     /translation="MSRKYKFHEKSGAYFVSFATVYWVGVFVREIYFQVIVDALDYCR
                     KHKGMILYAYCIMPTHIHLLFQAENQNPSDLIRDFKTFTAKILIQRIKDNLQENRREW
                     LLWMFSRAAERRCNVKQYQFWQHHNQPIEIYSQKFFDEKLNYIHQNPVVSGFVSEPWE
                     WKYN"
BASE COUNT         1133 a          542 c          626 g         1049 t
ORIGIN      
        1 tgaagatcaa aaaatatgta tttcacctga cttatacaac acttatctgc cccttaccta
       61 gggtattcgc agaggaaggt tatatgttag atacggttga ggttaaagcc caagcaataa
      121 aaaaacagat gaagttttca ttaaaacagg ggcaataagc acccgagata aaatcttgga
      181 atcaaaccaa agcttagaga ctattgttcg ttctatgcct ggcgcattta cacaaatgga
      241 taaatctcaa ggtgtggttt ctgttaatat tcgaggaggt tctggatttg ggcgagctaa
      301 taatgcagta ggcccaaatt atatgggaat gctcgctggc aaataccaat tcaatgactc
      361 tacttggata ggagcattat ttgggcatag ttggcgcaaa atctctcaaa attataaaat
      421 aggaggcgga cgaaaagtta cggatagctc gattgacctt agtaaaattg atgatctaga
      481 taaagaaagt tctaccacct caccgttcaa tgcagctcat ttaaaacaaa aaccaatgag
      541 tcgtatggct aaattggaat atggcgataa ataccaaacc atcacactat taccaaagtc
      601 aggtagcggg tagacattta aaaaaccaaa acaaccagtt aaattatcgt tttcacttgc
      661 ccgagtcacc ttggttagat gttcaagtgg cctatgcgga aaatcaaggc aaacaaaact
      721 acaacaaagg gagctgaatt aataataaat atttaattca aggtttggca attaacaaca
      781 aagcgacaac cttaaatttg agtaacacct ttaaagtgtc tccgtttaaa gatggagaat
      841 gggaagcaat attaggtttt aatcgtttaa agaaccgcta tagtaaaaat agacatcctg
      901 cggaattaaa ctataactta gagaatggcg aaaccagcga aaacaacgat tctgtaggaa
      961 tgacagccgt tcgtaaatcg ctttatactt caactttcca gcctgatggc gaacagaagt
     1021 tcgatacttt ttatctcgac aatcacttta actatggtat atggggattg gatataaacg
     1081 caaatattaa taccgctcgg tttattggtc agcgttttaa atattttcct tttgcgatta
     1141 gagaattgga gtcagatatt agacaggcaa gtagaaatag gcagtttgag catttaaggt
     1201 cattacaatc tcaattagac aacttgcaaa aaaacattgt acatatattc cagatgagga
     1261 ttttcctaat gatcctgaat tgggagagtt taactgtcct gatgtcaatt ttcctcatac
     1321 agcaacagga aaacataaac gaattaatta ttcagcaacc ttgtctgctt atattcacga
     1381 tttattcacg ccctttatta gttattctca aacacatcga gcccctaata ttaaagaaat
     1441 attcttctct aatttaggtg actatggtgt aaataccgca ctacaaccag agcaagcgaa
     1501 aacaacacag tttggtatta atggattcaa agaacgggta tttagtgaag aagataaatt
     1561 aggatttaaa gtgctatttt ataacactca cttaaaaaac tatatttata atgtacaaca
     1621 taccgctgtt ggtagtgctc ctagtttatt cattttccac aaaaactatg aaaaaccagt
     1681 aaatatcaaa gggatagaat tagaatttag ttatgatata ggctctttct atggcaactt
     1741 agcttatgct cgtcaaaata cgaatcaacc cgtatccttt acagatgcaa gttcaagggt
     1801 agatgccgct tctcattatg gttttaaaac tcaaggtttt ggtgccagca aaatttcagc
     1861 gttaccaaga gactatggct cattggagtt agggacaaga tggtttgatc aaagactaca
     1921 aattggcgga gtggcaaaat attacggaaa aagtaaacgt attgcgatag atgagtttaa
     1981 ctatacttat tatcctggaa cacatattgt gaaagaaact catcggcttg aagaaaccgt
     2041 aaataaacaa cctattattg ttgattttta cgtgagctac gaaccaatca agtcgcttat
     2101 attaaagtta gaactataaa atgtctttga caaaaagtac attgatcctc ttgatgctaa
     2161 taatgatgca gcaagtcaga gggtttacaa ttctgatatc agtgatgaac ctatttatac
     2221 gctcaataat tatgcaagag ggagaactat agtgtttagc acaagttata aattctaaat
     2281 ggggttgtcc tagataagct agcttaaatt tcctttaact aattatttgg catagtgact
     2341 aaaattgagt ctgcacagta ggttaaaacc ttataatata aggatttaac ccagatggtg
     2401 caagcgtcca cgcttgtgcc agttaattcc tgttctgaaa gtatttcagt cataagataa
     2461 aagcctaaat cagccaagta aaatttggtt tatttgggct tttgtttttg gcacaagcgt
     2521 ggacgcttgc gtcatcattt tatttatcca tccattgcta tcatttcagt atttctttgg
     2581 cttatcacaa gcggttaaat tttatcaaca ctttgcaagt tttaatgatt tttgcgatct
     2641 agatcgaaaa agttatattg gcttgtggaa tttaattttg aatagggtat ttttcttatt
     2701 cctttttaag ttgagaaagg ctatgagccg aaaatataaa ttccacgaaa agagcggtgc
     2761 ttattttgtc agttttgcaa ctgtttattg ggttggtgtg tttgtgagag agatttattt
     2821 tcaggtaatt gttgatgcct tagattactg cagaaaacat aagggaatga ttttgtatgc
     2881 ctattgtatt atgccaactc atatccattt attatttcaa gcagaaaatc aaaatccttc
     2941 tgatttaata cgagatttca aaacattcac cgctaaaata cttattcaga gaattaaaga
     3001 taatttgcaa gaaaaccgtc gggaatggtt gctgtggatg ttttctcggg cggctgaacg
     3061 acgttgtaat gtaaaacaat atcaattctg gcaacatcat aaccaaccta ttgaaatcta
     3121 ttcgcagaaa ttctttgatg aaaagttaaa ttatattcat caaaatccag tggtaagtgg
     3181 ttttgtgtct gagccttggg aatggaaata taattgaaat aaactgcttg tatttttgcg
     3241 atctctgtcg aaaaattgtg aatttttact tgtctgtcgg agaattttgc gtaaattctg
     3301 cttattatgt tttagttaaa ggtattctat gagtagataa cccaaatgaa
//
LOCUS       DANLVT010000177         3311 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.178, whole genome shotgun sequence.
ACCESSION   DANLVT010000177 DANLVT010000000
VERSION     DANLVT010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3311)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3311)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3311
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.178"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            302..2833
                     /locus_tag="PXC99_002435"
     CDS             302..2833
                     /locus_tag="PXC99_002435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5418838.1"
                     /translation="MQREYEKLGASISSVSRKRTEENRALKDSRHQQAKQLLYFRSLR
                     RELRASGINIKAFAQSETNLTDKIAKANQLIDQQKAKLEKLNAVKARNEKYWATVEKV
                     KNTSERLHNLGQRSMISGAAISAPVVGLGKGVVGMAQTAGKFEQFNAILEVTEGSAEK
                     AKQSFDWVKQFAVDTPSNLDEAMEAFVKLRAYGLDPTNGLLQTLGDTGAAMGKPVMQA
                     VEAIADALTGENERLKEFGIKGSVVKGTNIIEYAYTDKLGKQQVAKVNKNNRKEIEQT
                     LTRIFNEKYAGAMEKQAKTLVGIWAKIEDYWTNFQMQVMESGAFDWIKNKLQWVLDSL
                     DKMAENGELQKWAEDVGAVIQETVQGLWAFGEKIIEVVKWLASLARENKGLIATFVKW
                     SAILGSSLTVLGAFAVVASFALYPVARLALGIGKFTGASTLLNKALFDSNDKFRLFNK
                     SLYSSGTTAAFVKSKFNQLATLPNVLGSSFNKLGGGIKMLIPQLKTKVFWLNMLKGIL
                     GKLWSAIRFIFSPLKLLLGIFSPIGLAITAISVAGVALYRNWEKVRAFFGGFLQGLSK
                     GLAPVLERFKPLGKLFETISNWVKSTFKWLSDLLTPADKTSESLDKASSAGEKFGLAL
                     AGAIDLVTSPVQWLVDQFKWISENMPSWDTIGEGVKKAATAIVPTEHAKQITKTAEMS
                     NNMYDPNYTPPQLEQKWIGGLVGNGKGRGFATGGYTGNGGKYEPAGIVHKGEYVMTKE
                     ATARLGVANLNRLNYGKVAGLTALASSVAFAQPMPAVKIDSRPPLTASQPSPTVAPVS
                     QNIHITINATGGQDPQAIARLVAMELEKQQRQAQARARSSLRDRG"
     gene            2898..3074
                     /locus_tag="PXC99_002436"
     CDS             2898..3074
                     /locus_tag="PXC99_002436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418839.1"
                     /translation="MFKEKGYDEFVNECVRKGREEHKAGLGFTLEQSRLHIKKTIEQK
                     SQELNEFQREVVYG"
     gene            3067..>3311
                     /locus_tag="PXC99_002437"
     CDS             3067..>3311
                     /locus_tag="PXC99_002437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5418840.1"
                     /translation="MAKITIKPQALSQFDEIVKSVIEFTGFETSGIRLQSDIFDKIEQ
                     IAFMPLSGRAREDGTRETFVRRYRIVYDYDRQADEVI"
BASE COUNT         1170 a          535 c          750 g          856 t
ORIGIN      
        1 gacggagaaa ttatctcaat ctttaaaagt acagagagat gaattaaaag cattggaaaa
       61 aacacaaagt aaaatgcaat catttaaaaa aatggacgat agcattaaga aatccaatga
      121 aactatactc aaacagacaa agcatttaga taatctcaaa aataaaatca gccaaatgaa
      181 aaatgaacga attgagctga aagtgaaaat ggatgcgaaa aaaagggaat ttcaacaaat
      241 tacgaaaggt ggttcagctt ggagtgcaag agccgcattt ttagataaag attttgaaaa
      301 aatgcaaaga gaatatgaaa aactcggtgc atctatttca agtgtcagcc gaaaaagaac
      361 agaagaaaat cgggcattaa aggattctcg ccatcaacaa gctaagcaac ttttatattt
      421 tcgtagttta agacgtgaat tgagagcaag cggcattaat attaaagctt ttgctcaaag
      481 cgaaaccaac ttaacagaca agattgcaaa agcaaatcaa ttaatcgacc aacaaaaagc
      541 aaaattagaa aaactaaatg cggttaaagc tcgaaatgaa aaatattggg caactgtcga
      601 aaaggtaaaa aataccagcg aacgtttgca taatttagga caacgctcaa tgattagtgg
      661 tgcggcaatt tctgcccctg ttgttgggct agggaaaggg gttgtcggaa tggctcaaac
      721 agcgggtaaa tttgaacaat ttaatgctat tttagaggta accgagggaa gtgctgaaaa
      781 agccaagcaa agttttgatt gggttaaaca atttgcagta gataccccct caaaccttga
      841 tgaagcaatg gaagcctttg taaagttaag agcatacggt cttgatccta ccaatggctt
      901 actacaaaca ttaggtgata caggtgctgc aatgggtaag cctgtaatgc aagcagttga
      961 ggcaatagca gatgctttaa cgggtgagaa tgaacgctta aaagaatttg gtattaaagg
     1021 aagtgtagtt aaaggtacaa atattattga gtatgcctac actgataaat taggcaaaca
     1081 acaagtcgca aaagtaaaca aaaataaccg aaaagaaatt gagcaaaccc taacccgtat
     1141 ttttaacgaa aaatatgctg gagcaatgga aaaacaagct aaaacgctag ttggtatttg
     1201 ggcaaaaatt gaagattatt ggacaaattt ccaaatgcaa gtgatggaat cgggagcatt
     1261 tgactggatt aaaaataaat tgcaatgggt gttagacagt ttagataaaa tggctgaaaa
     1321 tggcgagttg caaaaatggg ctgaagatgt cggagccgtt attcaagaaa cagtacaagg
     1381 cttatgggct tttggtgaaa aaattattga agtggttaaa tggttagcga gcttggcacg
     1441 ggagaataaa gggctaattg caacattcgt taaatggtct gctattcttg gctctagttt
     1501 aacggtgcta ggagcttttg cagtggtggc aagttttgca ttatatcctg tagcaagatt
     1561 ggctcttggt atcggcaaat ttacaggtgc aagcacctta ttaaataagg cattatttga
     1621 tagtaatgat aaattccgat tattcaataa atcactttat tcatcaggca ctacggctgc
     1681 ttttgttaaa tcaaaattta atcagttagc aactttacca aatgtgctgg gaagtagttt
     1741 taataaatta ggcggtggca tcaaaatgct aattccacag cttaaaacaa aagtattttg
     1801 gctcaatatg ctaaaaggta ttttaggcaa gttgtggagt gcaatccgtt ttattttctc
     1861 accgttgaaa ttattacttg gtattttctc gccgattggc ttagcgatta cagctatttc
     1921 ggtagcaggg gtagcgttat atagaaattg ggagaaggtc agagcctttt ttggaggctt
     1981 tttgcaagga ttatctaaag gtcttgcacc agtattagag agatttaaac ctttaggaaa
     2041 actatttgaa actatatcaa actgggttaa atctacgttt aagtggttat ccgatttatt
     2101 aaccccagcg gataaaacat cggaaagttt agataaagcg agttctgcag gagaaaaatt
     2161 cgggcttgca ttggctggtg caatagactt ggtaacatca cctgttcagt ggctagtcga
     2221 tcagtttaag tggatttctg aaaatatgcc gagttgggac actattggtg agggtgtaaa
     2281 aaaggcagct actgcaattg ttcccaccga gcacgccaag cagattacta aaacggcaga
     2341 aatgtcaaac aatatgtatg accccaatta tactccacca caacttgagc aaaaatggat
     2401 tggtggcttg gttggtaacg gtaaaggaag aggttttgcc acaggcggct acaccggcaa
     2461 tggtggcaaa tatgagcctg ccggtattgt gcataagggc gagtatgtaa tgaccaaaga
     2521 ggcaactgca cgcttgggtg tggcaaatct taaccggtta aattatggca aagttgctgg
     2581 gctaactgca cttgcgtcaa gtgttgcgtt tgctcaacca atgcctgcgg tcaaaatcga
     2641 cagcagacca ccgctgacgg caagccaacc aagcccaaca gttgcaccgg tgtcgcaaaa
     2701 tatccatatc accatcaacg ccaccggtgg gcaagaccca caagcaatcg cccgactggt
     2761 tgcaatggag ttggaaaaac aacaacgcca agcacaagca agagcaagat cgtctttgag
     2821 agacaggggc taatttgaca aagtagaatg aaaagcggac aatgctctaa attgtccgct
     2881 ttttatagga gcaaatgatg tttaaagaaa aaggatatga tgaatttgtg aatgaatgtg
     2941 tgcgaaaagg tagagaagaa cacaaagctg gtttaggatt tacgctagag caatctcgct
     3001 tacatatcaa aaaaaccatt gagcaaaaat cacaagagct aaacgaattt cagcgtgaag
     3061 tggtttatgg ctaaaattac cattaaacca caagcattga gtcaatttga cgagattgta
     3121 aaaagtgtta tcgaatttac cggttttgaa acgagtggta ttcgattaca aagtgatatt
     3181 tttgacaaaa tagagcaaat tgcatttatg ccactctctg gaagagcaag agaagatggg
     3241 acaagagaaa ctttcgtcag acgttatcgt attgtgtacg attacgatag gcaggcagat
     3301 gaagtaatta t
//
LOCUS       DANLVT010000178         3310 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.179, whole genome shotgun sequence.
ACCESSION   DANLVT010000178 DANLVT010000000
VERSION     DANLVT010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3310)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3310)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3310
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.179"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..193)
                     /locus_tag="PXC99_002438"
     CDS             complement(<1..193)
                     /locus_tag="PXC99_002438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5418841.1"
                     /translation="MIITMKDIAKEANVSLGTVSNVLNGKSNVSLAKIEKVQAAVEKL
                     GYRKNIQASTLKSGTSNKIA"
     gene            complement(355..1695)
                     /gene="gdhA"
                     /locus_tag="PXC99_002439"
     CDS             complement(355..1695)
                     /gene="gdhA"
                     /locus_tag="PXC99_002439"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HDL5418842.1"
                     /translation="MSDLNALFQKIKQRDPNQAPFHQAVEEVFGSLAPFLAKNPKYTQ
                     QGLLGRIVEPERVISFRVTWVDDKGQVQVNRGYRVQMNSAIGPYKGGIRFHPTVDLGV
                     LKFLAFEQVFKNALTTLPMGGGKGGSDFDPKGKSDAEVMRFCQAFMSELYRHIGADTD
                     VPAGDIGVGGREIGYMFGQYKKLRNEFTSVLTGKSLTWGGSLIRPEATGYGAVYFAES
                     MLATKGQQIEGKSVVISGSGNVAQYAAEKVIQKGGKVLTVSDSNGYVLFPESGMTEAQ
                     LQALLELKNERRERLSVYATEQGLKYFDGQKPWGVKCDIALPCATQNELDTEDAKELV
                     KNGCICVAEGANMPTTLGGVEVFIGAKILYAPGKAANAGGVATSGLEMSQNAIRLSWS
                     REEVDQRLFNIMKAIHENCVENGTEADGFVNYVNGANIAGFKKVANAMLEQGIV"
     gene            complement(1888..2229)
                     /gene="bamE"
                     /locus_tag="PXC99_002440"
     CDS             complement(1888..2229)
                     /gene="bamE"
                     /locus_tag="PXC99_002440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HDL5418843.1"
                     /translation="MKMKSLLAAMLLALGVTACSTVEKVVYRIDVPQGNYLEQDKIAQ
                     LKVGMTAEQVEYLLGTPMLKNIFETHRWDYVFIKREGYKDPEQRNLFIYFDAKGLVSK
                     IDDSNANAEQK"
     gene            complement(2296..3297)
                     /gene="yejK"
                     /locus_tag="PXC99_002441"
     CDS             complement(2296..3297)
                     /gene="yejK"
                     /locus_tag="PXC99_002441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein YejK"
                     /protein_id="HDL5418844.1"
                     /translation="MSINVSEIVLHQLQKTEGENPELNTFLRENLLAISPEVDQMMLQ
                     LHQAYQSKAKAYGIFKPESVFAQQLNRLLEQETDFLPFSHSCAKMLAAELIKYPFADG
                     GTFILCRYTFLATEYLFIALIDSRNSMLVDEQLEIKRTQYLEIAQYDIACRINLTELK
                     LDATSNRYLTFVKGRVGRKIADFFMDFLSAEEGFNPQLQNQTLLQAVSDYCEQGELSA
                     PQTREVKKQVFEYCKGQINSGEEIALNELSNALPTLNEIDFAQFTQEQEYGLEENIPP
                     MRNALKTLTKFSGSGKGVTISFNAELLGERLIWDELNDTLTIKGLPANLRDQLERNK"
BASE COUNT          966 a          726 c          559 g         1059 t
ORIGIN      
        1 tagcaatttt attacttgtg ccacttttta acgtagaggc ttgaatattt ttacgataac
       61 ccaacttttc aacggcagct tgtacttttt ctattttagc taagctaaca ttactttttc
      121 cgtttaatac attcgatact gttcctaacg aaacatttgc ttcctttgcg atatctttca
      181 tcgtaatgat catatactgc cctttcacat actgctaaaa ctgagattgg catagatttt
      241 accataattg gcaaatgaaa tacgatttca atttagcttg tctctagcta caacctaaaa
      301 taaaaaaact gcctcgatat atcgaggcag ttcttgaata atagggataa taaattaaac
      361 aataccctgt tctaacatcg catttgccac ttttttgaaa ccagcaatat tcgcaccgtt
      421 tacatagttt acgaaaccat ctgcttcagt accattttct acgcagtttt cgtgaattgc
      481 tttcataatg ttgaataaac gctgatctac ttcttcacga ctccaagata gacgaattgc
      541 attttggctc atttctaaac ctgaggttgc cacaccacct gcgttagccg ctttacccgg
      601 agcataaagg attttcgcac cgataaagac ttcaacacca cctaatgtgg ttggcatatt
      661 tgcaccttct gccacacaaa tacagccgtt tttcactaat tctttagcat cttcggtatc
      721 taattcgttt tgggttgcac aaggtaaagc gatgtcacat ttcacacccc acggtttttg
      781 accgtcaaag tattttaagc cttgttctgt tgcatacaca gataagcgtt cacggcgttc
      841 gtttttcaac tctaataatg cttgtaattg tgcctctgtc ataccggatt cagggaataa
      901 gacataaccg ttagaatctg aaaccgttaa tactttaccg cctttttgaa tcactttttc
      961 agctgcatat tgtgccacgt tacccgaacc ggaaattacc actgattttc cttcgatctg
     1021 ctgaccttta gtcgctaaca tagactctgc aaaatacacc gcaccataac cagttgcttc
     1081 cggacgaatt aagctaccac cccaagtcag cgatttaccg gttaatactg aagtaaattc
     1141 attgcgtaat tttttgtatt gaccgaacat atagccgatt tcacgacctc ccacgccgat
     1201 atcgcctgca ggaacgtcag tatcagcacc aatgtggcga tataattcgc tcataaacgc
     1261 ttggcagaaa cgcattactt cggcatcaga tttgcctttc gggtcaaagt ctgaaccacc
     1321 tttaccaccg cccattggca atgtcgttaa cgcatttttg aatacttgct caaaggctaa
     1381 gaattttaat acgcctaaat caacggttgg gtggaaacga ataccgcctt tgtatggacc
     1441 gattgctgag ttcatttgta cacggtaacc acggtttact tgcacttgac ctttatcatc
     1501 aacccaagtg acacggaagc taattacacg ctcaggctca acaatacgcc ctaataaacc
     1561 ttgctgggta tatttcggat ttttagctaa gaaaggggca aggctaccga acacttcttc
     1621 aaccgcttga tggaaagggg cttggttcgg atcacgttgt ttgatttttt ggaaaagggc
     1681 gtttaaatcg ctcatattat actcctgaat aaattgatga tgttgtgtat ttaagatgag
     1741 cgaagtctag caagcaattt tagctttgaa aagatagatt agaaaaattt atcattaaaa
     1801 taagaaaaat taagtttaaa tgcttatttt ttattcaaaa aaataagccc acttttaaaa
     1861 gtgggctttt cgaaccaaca aatcgtccta tttttgttct gcattcgcat tgctgtcatc
     1921 aatttttgat actaaccctt tagcatcaaa ataaataaac agattgcgtt gttcaggatc
     1981 tttataacct tcacgtttaa taaacacata atcccaacgg tgggtttcaa aaatgttctt
     2041 taacattggt gtaccaagca aatattcaac ttgttccgct gtcataccga ctttaagttg
     2101 agcaatttta tcttgttcta agtaattgcc ttgcggtaca tcaatacggt acaccacttt
     2161 ctcaacggtt gaacaagccg ttacacccag tgcaagcaac attgcagcta aaagagattt
     2221 cattttcata attgaccttt tgataatcca aaattcagat aacgagataa tacctaaact
     2281 gataaaaatt ttccattatt tgttacgttc cagctggtca cgcagatttg ccggtaatcc
     2341 tttgattgtc agtgtgtcgt ttagttcatc ccaaattaaa cgctctccta ataattctgc
     2401 gttaaagcta atcgttactc ctttgcccga accggaaaat ttcgtcaggg ttttaagggc
     2461 atttcgcata ggcggaatat tctcttccaa gccgtattct tgctcttgcg taaattgggc
     2521 aaaatcgatt tcattcagtg ttggcaatgc gttggaaagc tcatttaacg caatttcctc
     2581 tccactattt atctgccctt tacaatattc aaacacctgc tttttcactt ctcgagtttg
     2641 aggggcagat aactcccctt gctcacaata atcgctcacc gcttgcaaca aggtttgatt
     2701 ttgcaattgt ggattaaacc cttcttccgc acttaaaaaa tccataaaga aatcggcaat
     2761 tttacgccct actctgcctt tcacaaaagt taaatagcga tttgacgttg cgtcaagttt
     2821 cagttcagtt aaattaatgc ggcaggcaat atcatattgt gcaatttcga gatattgcgt
     2881 gcgtttaatc tctaactgct catcaaccag cattgaatta cggctatcaa tcaacgcaat
     2941 aaacaaatat tcggtagcta aaaaagtgta acgacacaaa ataaaagtgc caccatcggc
     3001 aaacggatat ttaatcagct ctgctgcaag cattttggca cagctatggc taaaaggtaa
     3061 aaaatcggtt tcttgctcca acaagcggtt gagctgttga gcgaaaaccg actccggttt
     3121 aaatataccg taagcctttg ctttactttg ataggcttga tgtaattgca acatcatttg
     3181 atcgacttca ggggaaattg ccaataaatt ttctcgcaaa aacgtattaa gctccgggtt
     3241 ctcgccctct gttttttgta attgatgtaa cacgatttca gaaacattaa tgctcattaa
     3301 ttcacttctc
//
LOCUS       DANLVT010000179         3273 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.180, whole genome shotgun sequence.
ACCESSION   DANLVT010000179 DANLVT010000000
VERSION     DANLVT010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3273)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3273)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3273
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.180"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..591)
                     /locus_tag="PXC99_002442"
     CDS             complement(<1..591)
                     /locus_tag="PXC99_002442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418845.1"
                     /translation="MKKYLMLCSLWFLSACFNESYDFRGKEFEEPVQAILVESDKIYF
                     IGSTIDAIFDKTLIDNTKASDVIYFLNKLLQSPYGRKISNHLITLAIYDENIQIQYSP
                     QFIAKNLTMSDIQALQKLGFQFSHSKEYLWKSYAGLGGKITQFKNRKEILEKYKFKQP
                     IIAKAKSYQKSIEFSFDDTISVIAAPITIPASIILFV"
     gene            825..1115
                     /locus_tag="PXC99_002443"
     CDS             825..1115
                     /locus_tag="PXC99_002443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000027827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HDL5418846.1"
                     /translation="MALRPLHDKVILKREEVETKSAGGIVLTGSAATKSTRGKVIAVG
                     TGRILDNGSVQPLAVKVGDVVIFNEGYGVKTEKIDGEEVLILAEHDILAIVE"
     gene            1184..2824
                     /gene="groL"
                     /locus_tag="PXC99_002444"
     CDS             1184..2824
                     /gene="groL"
                     /locus_tag="PXC99_002444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608625.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HDL5418847.1"
                     /translation="MAAKDVKFGNDARVKMLKGVNILADAVKVTLGPKGRNVVLDRAY
                     GAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNE
                     GLKAVAAGMNPMDLKRGIDKAVAAVVEELKAISKPCETSKEIEQVGTISANSDSTVGQ
                     LIAQAMEKVGKEGVITVEDGTGLEDALDVVEGMQFDRGYLSPYFINKPEAGTVELENP
                     YILLVDKKVSNIRELLPVLEGVAKAGKPLLIIAEDIEGEALATLVVNTMRGIVKVAAV
                     KAPGFGDRRKAMLQDIAILTAGTVISEEIGMELEKATLEELGQAKRVVISKDNTTIID
                     GIGDETQIKGRVAQIRQQIEDSTSDYDKEKLQERVAKLAGGVAVIKVGAATEVAMKEK
                     KDRVDDALHATRAAVEEGIVPGGGVALVRAANKVADTLKGDNEEQNVGIKLALRAMEA
                     PLRQIVANAGEEASVVARNVKEGSGNYGYNAGTEQYGDMLEMGILDPTKVTRSALQFA
                     ASIAGLMITTECMITDLPKEEKLDPAAMGGMGGMGGMM"
     gene            complement(2949..3236)
                     /locus_tag="PXC99_002445"
     CDS             complement(2949..3236)
                     /locus_tag="PXC99_002445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5339 domain-containing protein"
                     /protein_id="HDL5418848.1"
                     /translation="MVSSNAIASVKTSSLTVAKPTLSKNLPTECEKMFNTANKLVSDA
                     ERQPGTHTQVLKMKNKLSLTKQQILKMDSELQQKSCEKGLTALNSLKQKHQ"
BASE COUNT         1041 a          522 c          728 g          982 t
ORIGIN      
        1 tacaaataaa ataatagatg cgggaatcgt aattggtgct gcaatgaccg aaatggtgtc
       61 atcaaagcta aattctatgc ttttctgata acttttcgct ttagcgatta taggttgctt
      121 aaatttatac ttttctagta tttccttgcg atttttaaac tgtgtgattt taccaccaag
      181 acctgcatag cttttccata gatattcttt tgaatggcta aattgaaaac ctaacttttg
      241 tagagcttga atatcgctca tggtgagatt ttttgcaata aattgcggac tgtactgaat
      301 ttgaatattt tcatcataaa tggctaaagt aattaggtga ttactgatct tccttccata
      361 cggactttga agaagtttat tcaaaaaata aataacatct gaagcttttg tattatctat
      421 cagcgtttta tcaaatatcg catcaattgt ggaaccaatg aaataaattt tatctgattc
      481 aaccaaaatt gcttgtacag gttcttcaaa ttcttttcct ctaaaatcat aactttcgtt
      541 aaagcatgcg gagagaaacc atagtgagca gagcattaag tattttttca ttttattatc
      601 ctatcttgaa attaatagtt taaatggtat aagagaattg gggtttttct aaacagaaac
      661 agatttctta ggtatatagt tttatcaaaa atggtcaaat ttgtaaaaaa ttttacaaat
      721 ttgaccgctt gcacttgaaa ctctaaaatc tgcctttata ttgttaggcg ttacgcattt
      781 tgcgtgaagt tttatttatt catttttaag aaaaggaaca tattatggca cttcgtccat
      841 tacacgataa agttatttta aaacgtgaag aagttgaaac aaaatcggca ggcggtattg
      901 ttttaaccgg ttcggcagca acaaaatcaa cccgtggcaa agtaattgca gtaggaacag
      961 gtcgcatttt agacaatggt tctgttcagc ctttagcagt taaagtgggc gatgtagtga
     1021 tttttaacga aggctacggc gtaaaaaccg agaaaattga cggcgaagaa gtgctaattt
     1081 tagcagagca cgatattttg gcgattgtag aataatttcg ttctgcacaa gcggttaaaa
     1141 aagcaaaatt ttttacatat ttcaaataca aaggatttag aaaatggcag caaaagacgt
     1201 gaaatttggt aacgatgcac gcgtaaaaat gttaaaaggc gtgaatattt tagccgatgc
     1261 ggtaaaagta actttaggtc cgaaaggtcg taatgtggtg ttagatcgtg cttatggtgc
     1321 accaacgatt acaaaagacg gtgtgtcggt tgcccgtgaa atcgaattag aagataaatt
     1381 tgaaaatatg ggggctcaaa tggtgaaaga ggttgcctct aaagccaatg atgccgccgg
     1441 tgacggtaca actaccgcaa ctgtattagc tcaagcgatt gtaaacgagg gcttaaaagc
     1501 agtggctgcg ggtatgaacc caatggattt aaaacgtggt atcgataaag cggttgcagc
     1561 agtggttgaa gagttaaaag cgatttcaaa accgtgcgaa acctcaaaag aaattgagca
     1621 agtagggacg atttctgcaa actcagattc aacagtcggt caattaattg ctcaagcaat
     1681 ggaaaaagtg ggcaaagagg gcgtgattac tgttgaagac ggtacaggtt tagaagatgc
     1741 attagacgtg gttgagggta tgcaatttga ccgtggttac ttatcgccat actttatcaa
     1801 taaaccggaa gccggtacgg ttgagttaga aaacccatat attcttttag tggataaaaa
     1861 agtgtctaac attcgtgaat tattaccggt gttagaaggt gttgcaaaag caggtaaacc
     1921 gttattaatt attgccgaag atattgaagg cgaggcgtta gctaccttag tggtgaacac
     1981 tatgcgtggt atcgtgaaag tggcggcagt gaaagcacct ggctttggtg atcgccgtaa
     2041 agcaatgtta caagatattg cgatcttaac tgcaggtact gtgatttctg aagagatcgg
     2101 tatggagctt gaaaaagcaa cccttgaaga gcttggtcaa gcaaaacgtg tggttatcag
     2161 caaagataac accacaatta ttgacggtat tggtgatgaa actcaaatca aaggtcgtgt
     2221 agcacaaatc cgccaacaaa tcgaagattc aacttcagat tacgacaaag aaaaactaca
     2281 agagcgtgta gcaaaattag ccggtggtgt tgcggtaatt aaagtaggtg cggcaactga
     2341 agtggctatg aaagagaaaa aagaccgtgt tgatgatgct cttcacgcaa cccgtgctgc
     2401 ggtggaagaa ggtattgtac cggggggcgg agttgcttta gtgcgtgcag ccaacaaagt
     2461 ggctgataca ctaaaaggcg ataacgaaga gcaaaatgta ggtatcaaac ttgccttgcg
     2521 tgcaatggag gctccattac gccaaatcgt tgccaatgca ggtgaagaag cctcagttgt
     2581 agcccgcaac gtgaaagaag gttcaggcaa ctacggctat aacgcaggta cagagcagta
     2641 cggcgatatg cttgaaatgg gaattttaga cccaactaaa gtgactcgtt cagcacttca
     2701 attcgcggct tctattgcag gtttaatgat cactacagaa tgtatgatta ccgatctgcc
     2761 aaaagaagag aaattagatc ctgccgcaat gggcggtatg gggggaatgg gcggaatgat
     2821 gtaattgccc attgagtgaa caaaagctac tgaaattaat tcagtagctt ttttgttggt
     2881 aacaagtggt taaatttatg ctattttttg caaataaaaa accaagcaag taagcttggt
     2941 tttagcgttt attgatgttt ttgtttaagg ctgtttagtg ctgttaaacc tttctcacaa
     3001 cttttttgct gtaattcaga atccattttt aggatttgtt gctttgttaa agaaagttta
     3061 tttttcattt ttagcacttg agtatgagta ccaggctgtc tttctgcatc agagaccaat
     3121 ttatttgccg tgttaaacat tttctcacat tcagttggca aatttttact taaagtaggt
     3181 tttgcaactg taagtgatga ggttttaaca cttgctatag cattactgga aaccaatatg
     3241 gtacaaagtg ttattcctaa aattcttttt agc
//
LOCUS       DANLVT010000180         3190 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.181, whole genome shotgun sequence.
ACCESSION   DANLVT010000180 DANLVT010000000
VERSION     DANLVT010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3190)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3190)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3190
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.181"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            176..781
                     /locus_tag="PXC99_002446"
     CDS             176..781
                     /locus_tag="PXC99_002446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL5418849.1"
                     /translation="MSEPNHAEQIRRLDNIIRLGTIAEVDLTTATARVNSGGITTDFL
                     PWLTFRAGTSQTWSAPTVGEQCVVLSVSGEFTTGVILFGIYTQNAPSQSADEHLFRFS
                     DGAEISYNTASGQLTVKNCKVVIVQATESITLDTPTVKATKNVVIGGNLSVKGTTSSQ
                     GAISTQGAVTAKGDVSGAGISLGSHHHIEQGDGRPTSGAKP"
     gene            781..1116
                     /locus_tag="PXC99_002447"
     CDS             781..1116
                     /locus_tag="PXC99_002447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HDL5418850.1"
                     /translation="MNRETGEQLEDEVEHIKQSIKDILLTAKGSRVMRRTYGSNLYKL
                     TDKPIAASLIMQLSAACVMALQQWEPRIAITRFKVEFAEDNYNKLICTLDFTLKHRKI
                     SIKGMRFTL"
     gene            1113..2030
                     /locus_tag="PXC99_002448"
     CDS             1113..2030
                     /locus_tag="PXC99_002448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate assembly protein"
                     /protein_id="HDL5418851.1"
                     /translation="MSEIVDLSKLPAPKVLEELDYETLLAERKAKFLSLYPESERAVM
                     AARLALESEPITKLLQENCYLQLLERQRINSAAQATMLAYATGTDLDVIAANFNVERL
                     VVQAEDLTASPPIVEELEPDDDFRQRVQLKIESVSVAGPRKAYTFHALSANGKIADVS
                     VISPQPAYVTVTLLSRDGNGAVASEIINAAKIALNDEEVRPIADRVTVQGASIVEYEI
                     NAVLHLYRGPEKEPILKAAKANLEAYINQTKRIGRDVTHSGIHAALHVAGVQNVEILQ
                     PRTDLVLTPYQAGYCVNYTLNVEVSDEYS"
     gene            2017..2649
                     /locus_tag="PXC99_002449"
     CDS             2017..2649
                     /locus_tag="PXC99_002449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein I"
                     /protein_id="HDL5418852.1"
                     /translation="MNTVKALLPPGSSLLEKRAAECLQQAVQNPIKFANLINPHKCPV
                     KFLPYLAWALSVDYWEEHWSEELKRETIIRSFEEHRKKGTASAVRRIVESLGYAFEIR
                     EWFAEKRQRQPGTFRVFVELKDKGISEKIYQELERLIEDAKPVSRHITELAVSATSKG
                     KANIFSGAHSGEIITIYPPKKLPVIVIKSKMDLFSATNSGEIITIYPNKR"
     gene            2652..>3190
                     /locus_tag="PXC99_002450"
     CDS             2652..>3190
                     /locus_tag="PXC99_002450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015981653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5418853.1"
                     /translation="MEQKYKTILTHHGERVIVEALANKIPVPLKEMAIGDGNGSSITP
                     SASQTTLVREVYRAEITDLLEDPQNRHQMIAELLIPENVGGFIVREIGLFDEQGGLVA
                     VANCPENYKPVLEQGSGKVQYYRMILQVSSSDAVTLSINNNIVYATRTEFNEFVNNLS
                     SPDGYKHIGRCKSVAELRT"
BASE COUNT          986 a          686 c          729 g          789 t
ORIGIN      
        1 ttatcttagc tatcattcac agtagccgac tttacccacg cccataatca gtaagcgacc
       61 taatcggtcg ctttttcttt gcctgttaaa acccatttca cacctcgcat ttatacccaa
      121 agcctttcgc cttttgcaaa atatcctcat tttttaaccg cttgtaattg taaaaatgag
      181 tgagccaaac cacgccgaac aaatccgccg tttagacaat attatccgac ttggcactat
      241 tgccgaggtg gatttaacca cagcgactgc acgggtcaat tcgggcggta ttacgaccga
      301 tttcttaccg tggctgactt ttcgtgccgg tacatcgcaa acgtggtcag ctccaacagt
      361 tggcgagcaa tgcgtggtgt taagcgtgag tggtgaattt accacaggcg tgatcttatt
      421 tgggatttac acccaaaacg ccccgagcca atccgccgat gagcatctat tccgcttttc
      481 ggacggtgca gaaatcagct acaacaccgc aagcggtcaa ttaaccgtaa aaaattgcaa
      541 agtggtgatt gtgcaggcga cagaatctat cacgctcgac acgcccacgg ttaaggccac
      601 aaaaaatgtc gtgattgggg gcaacctatc cgtgaaaggc acaacctcat cgcaaggtgc
      661 aatcagcaca caaggggcgg taacagcaaa aggcgatgta tcaggggcgg gaatcagttt
      721 aggcagccac catcacattg agcaaggtga cggcagacca actagcggag caaaaccata
      781 atgaaccgag aaacaggcga acagcttgaa gacgaagtag agcatatcaa gcagtctatc
      841 aaagatattt tgctgacggc aaaaggcagt cgggtaatgc ggcgaaccta tggcagtaat
      901 ctctacaagc taactgataa accgattgcc gcaagtctga ttatgcaact ctccgctgcg
      961 tgcgtgatgg cgttgcagca atgggagcca cgtatagcga tcacccgatt taaagtggaa
     1021 tttgccgaag ataactacaa taagctgatt tgcaccttag attttaccct taagcaccga
     1081 aaaatcagca tcaaaggaat gcgttttaca ctatgagcga aattgtcgat ttatccaaac
     1141 tccccgcccc gaaagtactg gaagaattgg actatgaaac cttactggca gagcggaaag
     1201 ccaagttttt atccctctac ccagaaagcg aacgagcggt aatggctgca cggttagcgt
     1261 tggagtctga gcctatcacc aagttactac aagaaaattg ctatttgcag ctactcgaac
     1321 gccaacgcat taatagtgcg gctcaagcca caatgcttgc ttatgctacc ggtacggatt
     1381 tagatgtcat cgcagccaac tttaatgttg agcggcttgt agtgcaagct gaagacttaa
     1441 ctgcaagccc gcctatcgtc gaagagttag agcctgatga tgatttccgt cagcgtgtgc
     1501 agttaaaaat tgaaagtgtt tcggttgccg gtccacggaa ggcttacacc tttcacgccc
     1561 tgtctgctaa cggaaaaatt gccgatgtgt ccgtcatatc accacagcca gcttatgtaa
     1621 cggtaacgct gctttctcgt gatggcaacg gagccgtagc ctcagaaatc atcaatgcgg
     1681 ccaaaattgc tctcaatgat gaagaggtta gaccgattgc cgatagagta accgtgcaag
     1741 gggcaagcat tgtggaatat gaaattaatg cggtgttgca tctctaccgt ggacctgaga
     1801 aagagcctat tttaaaagcg gcaaaagcta acttagaggc ttacatcaac caaacaaaac
     1861 gcattggacg agatgtgact cactcaggta tccacgccgc cttgcacgtt gccggtgtgc
     1921 aaaatgtgga aattttgcag ccgagaactg atttggtgct gacaccttac caagccggtt
     1981 attgtgtcaa ttacacgcta aatgttgagg tgagcgatga atacagttaa agcattattg
     2041 ccacccggtt catcactttt ggaaaaacga gctgccgaat gtttgcaaca agcggtacaa
     2101 aatccgatta aatttgcaaa tttgattaat ccacacaaat gccccgtgaa atttttgccc
     2161 tatcttgcgt gggccttatc ggtggattat tgggaagagc attggagtga agaattaaaa
     2221 agagaaacca ttattcgatc ttttgaagaa caccgaaaga aaggcacagc aagtgcagtg
     2281 cgaagaattg tggaatctct cggctatgct tttgaaatcc gtgagtggtt tgcggaaaaa
     2341 cggcaacggc agcccgggac gtttagggtt tttgttgagt taaaagataa agggattagc
     2401 gaaaaaatct accaagaatt agaaaggttg attgaagatg caaaaccggt atcaaggcac
     2461 atcacagaat tagcagtatc agccacctca aaaggcaaag caaatatttt tagtggagca
     2521 cacagtggcg aaattattac gatttatcca cctaaaaagc tccctgttat tgtcattaaa
     2581 agcaaaatgg atttatttag tgcaacaaac agtggcgaaa ttattacgat ttatcctaat
     2641 aagaggtaaa aatggaacaa aaatataaaa caatattaac ccatcacggt gagcgagtga
     2701 tcgttgaggc tcttgcaaat aagataccag tgccacttaa ggaaatggct ataggagatg
     2761 gtaacgggtc atcaataact ccaagtgcat ctcaaaccac acttgtaaga gaagtttatc
     2821 gtgcggaaat tacagatttg ctagaagacc cgcaaaatcg ccatcagatg attgctgaat
     2881 tactaatccc agaaaatgta ggtggattta ttgtccgaga aatagggtta tttgatgaac
     2941 aaggtggttt ggttgctgta gcaaattgcc ctgaaaatta taagcctgta ttagaacaag
     3001 gcagtggtaa agtccaatat taccgaatga ttttacaagt tagtagtagt gatgcggtca
     3061 ccttatcgat taacaataat attgtttacg ccacaagaac tgagtttaac gaatttgtaa
     3121 ataacttgag tagtcctgat ggctataaac acatcggacg ctgcaaatct gtagcagaac
     3181 tccgcactat
//
LOCUS       DANLVT010000181         3141 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.182, whole genome shotgun sequence.
ACCESSION   DANLVT010000181 DANLVT010000000
VERSION     DANLVT010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3141)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3141)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3141
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.182"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            257..1375
                     /locus_tag="PXC99_002451"
     CDS             257..1375
                     /locus_tag="PXC99_002451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HDL5418854.1"
                     /translation="MKKTLVALAVTAFAASASATTVYDAEGSKVDFDGSLRIVLDRTN
                     SKELDNHNVVKTKKNAHTGIRNTGSRFGVRVKHDLAQDFYALGRVEFRFNKNTSDDGF
                     GDLYTKRAYVGLGSKQYGELTFGRQVTIADDLSQSVDYNYGINPKGDYIQTDGNQVIR
                     YNYRGVENLHVSANYNFAQDRKDGKVLANKLQNAYGIGALYTVDNWDLRAAYGHTNYK
                     TATDSTKHRKDGVLGSVGYKFGDLKLSVDTGYSREKGLAVTDDNGVTTFYNGVKSNAF
                     YVSPNFEYQVVPASKVYGNYLYERVKSKSNGSTYAAGKEKTHGFLLGVDYQFHKQVVA
                     FVEGSYTRTKDYDKVTNGYKYSGKSTNKAIGVGMRVYW"
     gene            complement(1528..2892)
                     /gene="glmU"
                     /locus_tag="PXC99_002452"
     CDS             complement(1528..2892)
                     /gene="glmU"
                     /locus_tag="PXC99_002452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HDL5418855.1"
                     /translation="MTQLSVVILAAGKGTRMYSDLPKVLHPVAGKPMVKHVIDTAKQL
                     DAQQIHLIYGHGADLLKARLSEEPVNWVFQAEQLGTGHAMQQAAPFFADDENIVMLYG
                     DAPLITKATLERLIAAKPENGIALLTVELENPTGYGRIIRENGSVVAIVEQKDANEAQ
                     LKVKEVNTGVMVASGASFKKWLKNLNNNNAQGEYYITDVIAMANQEGFKVQAVQATEF
                     MEVEGANNRLQLAALERFYQKREAEKLLLAGVTIIDPSRFDLRGTVTHGKDVQIDVNV
                     ILEGEIKLGNNVKIGAGCVLKNCEIGDNVEIKPYSVIEDSIVGAKSAIGPFSRLRPGA
                     ELAEETHIGNFVEIKKATIGKGSKVNHLTYVGDAEIGKECNIGAGVITCNYDGANKFK
                     TIIGDNVFVGSDSQLIAPVTIASGSTIGAGATVTKDIAENELVISRVPQRHIQGWQRP
                     TKKK"
BASE COUNT          910 a          557 c          602 g         1072 t
ORIGIN      
        1 gcttcatttt ttctgttaaa aatgagtgga ttttctccaa atgaaataat gtaagtataa
       61 ccatttgatt ttaaaagaaa aaatgccgtc tttgttttgg ggtttgaact attgacattg
      121 agttttcttt ttgcaattat tctggcgaaa acaatgttag gcgttttgct gatacattgt
      181 atcttggata attactctta caccttaatg agggtaatta cttatcatat aacatataaa
      241 atctaaggtg aaaattatga aaaaaacatt agttgcatta gcagtaaccg cgttcgcagc
      301 gtcagcatca gcaaccaccg tttacgatgc agaaggttca aaagtagatt ttgatggttc
      361 tttacgtatt gttcttgata gaacaaattc taaagagcta gacaatcata atgttgttaa
      421 aactaaaaaa aatgcacaca caggaatccg taacactggt tcacgttttg gtgtaagagt
      481 aaaacatgat ttagctcaag atttctatgc attaggtcgt gttgagttcc gttttaacaa
      541 aaataccagt gatgatggtt ttggtgattt atatactaaa cgtgcttatg ttggtttagg
      601 tagtaagcaa tatggtgaat taacttttgg tcgtcaagta acgattgctg atgatttaag
      661 tcaatcagta gattacaact acggtattaa tccaaaaggt gattatattc aaaccgatgg
      721 taaccaagtt attcgttata actaccgtgg tgttgaaaac ttacatgtaa gtgcaaacta
      781 taactttgca caagatcgta aagatggtaa agtattagca aataaacttc aaaatgcata
      841 cggcattggt gcattataca ctgtagataa ctgggattta cgtgcagctt atggtcatac
      901 aaactacaaa acagctactg atagcactaa gcaccgtaaa gatggtgtat taggttctgt
      961 tggttataaa tttggtgact taaaattaag tgttgataca ggttattctc gtgagaaggg
     1021 tttagctgtt acggatgata atggtgtaac tacattctat aatggtgtta aatcaaacgc
     1081 tttctatgta tctccaaact ttgaatatca agtagtgcct gcatctaaag tatatggtaa
     1141 ctacttatat gagcgtgtga aatctaaatc aaatggttct acatatgctg ctggtaaaga
     1201 aaaaactcat ggtttcttac ttggtgttga ttaccaattc cataaacaag tagttgcttt
     1261 tgttgagggt tcttatactc gtactaaaga ctatgataaa gtaactaatg gttataaata
     1321 ctcaggcaaa tcaactaaca aagctatcgg tgttggtatg cgtgtatact ggtaatcaat
     1381 tgattttcta aattgataaa cccctaacaa tatttattgt taggggtttt gttttaaata
     1441 tattgttcat tatccttttt aaagtgtatg gctttgctgt tattggcaaa gccaattttt
     1501 aaatataata acttttgacc actggcacta tttcttttta gtcgggcgtt gccagccttg
     1561 aatatggcgt tgtggtacac ggctaattac cagttcattt tccgcaatgt ctttagtgac
     1621 tgttgcaccg gcaccaatgg ttgaaccgct ggcaatcgtg accggggcaa tgagttggct
     1681 gtctgagccg acaaatacgt tatcgccaat aatggttttg aatttattcg caccatcata
     1741 gttacaagtg attacacctg ctccgatgtt acattctttg ccgatttccg catcgcctac
     1801 ataagtgaga tgatttactt ttgaaccttt gccgatggta gcttttttga tttccacaaa
     1861 gttaccgata tgggtttctt ccgctaattc tgcccccggg cgtaagcgag agaatggacc
     1921 gatagcggat tttgccccga caatcgaatc ttcaatcaca gaataaggtt taatttcaac
     1981 attatcgcca atttcgcagt ttttcagtac gcagcctgca ccaattttta cattgttacc
     2041 gagtttgatt tcaccttcta gaatgacatt cacatcgatc tgaacatctt ttccgtgggt
     2101 gacagtgcca cgaagatcaa aacggcttgg gtcgataata gttacaccag ccaataacag
     2161 tttttccgcc tcacgttttt ggtagaaccg ttcaagtgca gcaagttgca aacggttgtt
     2221 tgccccttct acttccataa attcagttgc ctgaaccgct tgtactttaa agccttcttg
     2281 gtttgccatt gcgatcacat cagtgatgta atattcacct tgagcattgt tgttatttag
     2341 gtttttcaac cattttttga agctcgcacc gcttgctacc atcacgccgg tattcacttc
     2401 tttgacttta agctgtgctt cattggcatc tttttgctca acaatcgcta ccacagaacc
     2461 attttcacga ataattcgtc cgtagcctgt cgggttttcc aattcaacgg ttagtaatgc
     2521 aataccattt tccggtttgg ctgcgattaa acgctctaaa gtggcttttg tgattagggg
     2581 ggcatcacca taaagcatta caatgttttc atcatcagcg aaaaaaggag ctgcttgttg
     2641 cattgcatgt cctgtgccta attgttcggc ttggaatacc cagtttacag gctcttcgct
     2701 taaacgtgct tttaacagat cggcaccgtg tccgtaaatt aaatgaattt gctgggcatc
     2761 tagctgtttg gcagtatcaa taacgtgttt taccatgggt ttaccggcaa ctgggtgtaa
     2821 cactttgggt aaatctgaat acatacgagt gcctttaccg gcagctaaaa taacaacgct
     2881 cagttgagtc atatagaatc cttatttgac taaatagatg aaggcttata gtaacgtgta
     2941 aattgctata agtgatattt ttgtaatatt ttaacctttt tataagtgga tttcatcgac
     3001 aagcaaaaga aatttgtctg tttgttatct ttttctatta tgtcgattct tatcttgtgg
     3061 aaaactggta taaataggta gcacttattt gtgctatctc tctacaatag tgtatatctt
     3121 tgctaaaata ttaaattaat t
//
LOCUS       DANLVT010000182         2706 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.183, whole genome shotgun sequence.
ACCESSION   DANLVT010000182 DANLVT010000000
VERSION     DANLVT010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2706)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2706)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2706
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.183"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            139..579
                     /locus_tag="PXC99_002453"
     CDS             139..579
                     /locus_tag="PXC99_002453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HDL5418856.1"
                     /translation="MTACKNGLGFLVLRLFLAYEFFEAGLSKLNGENWFASIQESFPF
                     PFNVLPADLSWAIASGAEILLPILLTLGLFTRFSALGLMILTAVAWYAVHAGNGYNVC
                     NNGYKMALIYLVMLVPLLLQGAGSLSLDFLLQKKSPTKRWLKFL"
     gene            605..892
                     /locus_tag="PXC99_002454"
     CDS             605..892
                     /locus_tag="PXC99_002454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418857.1"
                     /translation="MKKATLMALAGALTMATATVNAETKSVKADACMEVKDGKCVKTK
                     ATEGKCGEGKCGATSSEPKATEGKCGEGKCGATAPKAAEGKCGEGKCGASK"
     gene            993..1916
                     /locus_tag="PXC99_002455"
     CDS             993..1916
                     /locus_tag="PXC99_002455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF692 family protein"
                     /protein_id="HDL5418858.1"
                     /translation="MLKFTGAGLGYRRDLADGFLSLTDNNIINFMEVAPENWLKMGGQ
                     ARYNFDKVAEKIPVIIHGLSLSLGGQAPLDMTLLKGIKNMQQQYNSFFFSDHLSYCEC
                     EGHLYDLLPMPFTDEAVHHVANRIKQVQDYLGMQISLENTSYYLHSPTSTMNEVEFLN
                     AIAQEADCGIHLDVNNIYVNGVNHGLLDPFVFIDQVDKSRVNYIHIAGHDEDHGAAED
                     VKMTEGESFNMVKGELRHLPTLLVDTHGEAVQKTVWDLLEYTYEHLPHIPPTLLERDF
                     NFPPFQELISEVQHIMSLQKKYAKTRLKNAA"
     gene            1906..2646
                     /locus_tag="PXC99_002456"
     CDS             1906..2646
                     /locus_tag="PXC99_002456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding domain-containing protein"
                     /protein_id="HDL5418859.1"
                     /translation="MPLKLVEEHKPLLKEIQAEFANAIRHNDVKLMSGNISPQRLGVY
                     SRLVRNNTLGFIDRCYVQLPQHLSPEEWVAVKEKFIREGKAHSPFFQDIAGEFLNFCR
                     ENGCMPPHLLELMDFENAQLLAEVSMATVPSEFEWDNDTIMQFSGAAELRQYAVNFIR
                     SEFKQFDFEPTNVLIWRDTEFGIYYNRLEELDFFLLSSLQEGANSLNGLLAELSEFTE
                     QNLELKALLRQLWEKWVEAEVIYPVYPE"
BASE COUNT          804 a          540 c          583 g          779 t
ORIGIN      
        1 ctataaaaat aggttataat ttttcacaca ttttttgtaa taaacgtata cttattctgt
       61 ctaataatca catttttagt taggagcatt tttatgtcat cattttcgtc atcattttca
      121 actcagtcag cttgctcaat gacagcttgt aaaaacggct tgggctttct tgtattacgt
      181 ctatttcttg cttatgaatt ttttgaagca gggttatcaa aactaaacgg tgaaaattgg
      241 tttgcctcaa ttcaagagag cttcccattc ccctttaacg tactaccagc cgatcttagc
      301 tgggctattg ctagcggagc ggaaatctta ctgcctattt tactcacttt gggtctgttc
      361 acccgcttca gtgcgttagg attaatgatc ttaacagcgg tagcgtggta tgctgttcac
      421 gctggcaatg gctacaatgt ctgcaacaat ggctataaaa tggcactcat ttatttagtg
      481 atgttagtac cacttttatt acaaggtgct ggctcgctct ctctcgattt tctgttacag
      541 aaaaaatccc caaccaaacg ctggttgaaa ttcctttaat cccttaattt atggagaatt
      601 tttaatgaaa aaagcaactt taatggcatt agctggtgca ttaactatgg caaccgcgac
      661 tgtaaacgct gaaactaaat cagtgaaagc agatgcttgt atggaagtaa aagatggcaa
      721 atgtgtaaaa accaaagcta cagaaggtaa atgtggcgaa ggcaaatgtg gagcaacctc
      781 ttctgagcca aaagcaaccg aaggtaaatg cggcgaaggg aaatgtggag caacggcacc
      841 aaaagcggca gaaggtaaat gcggtgaagg caagtgtgga gcttctaagt aagtagcgaa
      901 ggtgcgtttt ctaaacgcac ctaacctctt ataaacacaa tctacaagcg gttaaattcc
      961 gctgattttt tgcaaattaa aggaacaaga cgatgttaaa atttactggt gccggtctag
     1021 gctatcgccg tgacctagcg gacggatttt tatctctcac agataacaat ataattaatt
     1081 ttatggaagt agccccagaa aactggctga aaatgggcgg tcaggctcgg tataacttcg
     1141 ataaagtcgc tgaaaaaatc cctgttatta ttcacggttt atccctctct ctcggcgggc
     1201 aagcgccttt agatatgacg ctactaaaag ggatcaagaa tatgcagcag cagtataact
     1261 cctttttctt ctctgatcat ttaagctatt gcgaatgtga agggcattta tatgacctgc
     1321 tgccaatgcc gtttaccgat gaagccgtac atcacgtggc aaatcgcatt aaacaagtgc
     1381 aagattattt aggtatgcaa atttcccttg aaaatacgtc ctactatctg cattcaccaa
     1441 ccagtacgat gaatgaggta gagtttctca atgcaattgc ccaagaagcg gattgtggca
     1501 ttcaccttga tgtgaataat atttatgtta atggtgtcaa tcacggcttg cttgatccat
     1561 ttgtatttat tgatcaagtg gataaatctc gtgtcaatta tattcatatt gcaggccacg
     1621 atgaagatca cggtgcggcg gaagacgtta aaatgaccga gggtgaatca tttaatatgg
     1681 taaaaggcga actacgtcat ctgccaactt tactggtcga tacacacgga gaagctgtac
     1741 aaaaaactgt gtgggattta ctagagtaca cctatgaaca cctaccgcat attccaccaa
     1801 cactgttaga acgggatttc aacttcccac cgtttcaaga actgattagt gaagtacagc
     1861 acattatgag cttacagaaa aaatatgcaa aaacgaggct aaaaaatgcc gcttaaactc
     1921 gttgaagaac acaaaccgtt actcaaagag attcaagccg agtttgcgaa tgcaattcgc
     1981 cataacgatg taaagctgat gagtggtaat atctctccac agcggcttgg cgtctattct
     2041 cgcttggttc gcaataatac tctcggtttt atcgaccgtt gttatgtaca gctccctcaa
     2101 catctaagtc ctgaagaatg ggttgccgtt aaagaaaaat ttatacgaga aggtaaggct
     2161 cattcgccct ttttccaaga tattgctggc gaatttctca atttttgccg agaaaatggc
     2221 tgtatgccac cacacttgct tgagttgatg gactttgaaa atgctcaatt actggctgag
     2281 gtatcaatgg caaccgtacc atcagaattt gaatgggata acgatactat aatgcagttt
     2341 tctggtgcag ctgagctgcg tcaatatgcg gtaaacttta tccgtagcga gttcaaacag
     2401 tttgactttg agccgaccaa cgtactgatt tggcgagata cggaatttgg catctattac
     2461 aaccgcttgg aagagctgga tttcttcctg cttagctcgt tgcaagaggg ggcaaattcc
     2521 ctgaatggct tactagcaga actcagcgag tttaccgagc aaaatctgga gctaaaagcc
     2581 ttgttacgcc aactttggga aaaatgggtt gaagcagagg tgatttatcc tgtctatcct
     2641 gaatgaggat aaggtatgtg atatgtactg acatacatag taggggcggg tcctgtgccc
     2701 gcccga
//
LOCUS       DANLVT010000183         2683 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.184, whole genome shotgun sequence.
ACCESSION   DANLVT010000183 DANLVT010000000
VERSION     DANLVT010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2683)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2683)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.184"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..1642
                     /locus_tag="PXC99_002457"
     CDS             <1..1642
                     /locus_tag="PXC99_002457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type I restriction-modification system subunit
                     M"
                     /protein_id="HDL5418860.1"
                     /translation="DLNADTSQAFLNELDQTLWTAADKLRKNLDAANYKHIVLGFIFL
                     KYISDSFTDFQAKLKTQLTTPESELYLDPALFDEQEFSQILAEELEQRDYYAAENIFW
                     VPEQARWDNIKSLSKLNLGDELPWGDKFKGVSRLIDDAFEAIERENPKLKGVLQRIAG
                     FGVPDEMLTGLIDLFSRTNFTQPMHNGEPVHLQAKDILGHVYEYFLGQFALAEGKKGG
                     QYFTPKSIVTLIVEMLEPYSGRIYDPAMGSGGFFVQADRFIQAHAGNRNAISVYGQES
                     NSTTRKLAVMNMAIRGIPFDFGDKPEDTLLNPLHIDKKMDVVMANPPFNQKEWWNESL
                     ANDPRWAYGTPPQGNANFAWLQHMIYHLSPKGKMALLLANGSMSSQTSGEGDIRKNIV
                     QADLVEAMIALPNQLFTNTQIPACIWIINKAKARKGEVLFINATQIGYLKDRVLRDFT
                     ADDIAKISDTYHNWQKQNGYENIPAFCYCATLDEIAKNDFVLTAGRYVGAVQEENDGV
                     PFAEKMQELTALLNEQFKQGRELEQQIAENLKGLGYGI"
     gene            1632..>2683
                     /locus_tag="PXC99_002458"
     CDS             1632..>2683
                     /locus_tag="PXC99_002458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5418861.1"
                     /translation="MAFNQYVFSDIVELISEKIKIKDLKKENYISTDNMLPNFGGITL
                     AENLPNSASCNRFAKKDILFSNIRTYFKKVWLAEFSGGCSPDVLVMRSKNTDILLNEY
                     LFLLIRSDDFINFTVISANGAKMPRGDKNAMKGFIFNIPSIEYQKKCIANYFAFDQKI
                     QLNTQTNQTLEAIAQAIFKSWFVDFDPVRAKAAALSEGKSEHEANLAAMSVICGKDTS
                     ELNDTEYKALWQIAEAFPSEFGDEGLPIGWKFNQADNLFDVGIGKTPPRKESEWFSDN
                     ANDTEWISIKDMGNQGLFITESSEYLKAEAVDTFNIKRIPENTVILSFKLTVGRVSIT
                     TKETTTNEAIAHFKIP"
BASE COUNT          858 a          613 c          544 g          668 t
ORIGIN      
        1 tgatctcaac gctgacacaa gtcaagcctt tttaaacgaa ctcgaccaaa ccctctggac
       61 tgccgccgac aaactgcgta aaaacctcga tgccgccaac tacaaacaca tcgttcttgg
      121 ctttatcttc ctaaaataca tctccgacag ctttaccgat ttccaagcca agctaaaaac
      181 ccagcttacc acccccgaaa gcgaactcta tcttgaccct gcactatttg acgaacaaga
      241 atttagccaa attcttgccg aagagttgga acagagagat tactacgccg ctgaaaacat
      301 cttttgggtg ccggagcaag cccgctggga caacatcaaa tcattaagca aactcaatct
      361 tggcgatgaa ttgccttggg gagacaaatt taaaggtgtc agccgcttga ttgatgatgc
      421 ctttgaagcc atcgaacggg aaaaccccaa actcaaaggc gtactccaac gcattgccgg
      481 ctttggcgtg cctgatgaaa tgctcacagg cttaattgac ctgttctcac gcaccaattt
      541 cacccagcct atgcacaatg gcgaacctgt gcatctgcaa gccaaagaca ttttagggca
      601 cgtctatgaa tactttcttg ggcaatttgc ccttgccgaa ggcaaaaaag gcggtcaata
      661 cttcacgcca aaatccatcg ttaccctgat tgttgaaatg ctcgaaccct attcagggcg
      721 gatttacgac ccagctatgg gcagcggcgg cttttttgtg caagctgacc gctttattca
      781 ggctcacgca ggcaaccgca acgccatttc cgtttatggg caagaatcca actccaccac
      841 tcgcaaactg gcggtgatga atatggcgat tcgtggtatt ccctttgact ttggcgacaa
      901 gcccgaagat accctactaa accctttgca catcgacaaa aaaatggatg ttgtgatggc
      961 aaatccgccc tttaaccaaa aagagtggtg gaatgaaagc ctagcaaacg atccacgctg
     1021 ggcatacggc acaccgccgc aaggcaacgc caactttgcg tggttgcaac atatgattta
     1081 ccacctctcc cccaaaggca aaatggcact cctgctcgcc aacggctcaa tgagcagcca
     1141 aacttcaggc gaaggcgaca ttcgcaaaaa catcgtgcaa gctgaccttg tcgaagcgat
     1201 gattgccctg cccaatcagc tattcaccaa cacccaaatc cctgcctgca tttggattat
     1261 caataaagcc aaagccagaa aaggtgaagt gctgtttatc aacgccaccc aaataggcta
     1321 cctgaaggac cgcgtcttgc gtgattttac cgctgatgac atcgccaaaa tcagcgacac
     1381 ctaccacaac tggcaaaaac agaacggcta cgaaaatatc cctgcgtttt gttattgtgc
     1441 cacgctggac gaaatcgcca aaaacgattt tgtgctgacc gcagggcgat atgtcggtgc
     1501 ggtacaagaa gaaaatgacg gcgtgccgtt tgcagaaaaa atgcaggaat tgaccgcttt
     1561 attgaatgaa caatttaaac aagggcggga attggaacag caaatcgcag agaatttaaa
     1621 ggggttggga tatggcattt aatcagtatg tattttcaga tattgttgaa ttaatatccg
     1681 aaaaaataaa aatcaaagac ttaaaaaaag aaaactatat ttcgacagat aatatgctgc
     1741 ctaattttgg tggaataaca cttgctgaaa accttccaaa ttcagcttct tgcaataggt
     1801 ttgccaaaaa agacattttg ttttccaata taagaaccta ctttaaaaaa gtttggcttg
     1861 ctgaattttc aggtggttgt tctcctgatg ttctggtaat gcgcagtaaa aacacagata
     1921 ttttattaaa tgagtattta tttttactta tccgttctga tgattttatt aactttacag
     1981 ttatatcagc aaatggagca aaaatgccac gaggggataa aaatgcaatg aaaggtttta
     2041 ttttcaatat cccaagtatt gaatatcaaa aaaaatgtat tgctaattat tttgcctttg
     2101 accaaaaaat ccaactcaac acccaaacca accaaaccct agaagccatt gcacaggcaa
     2161 tcttcaaaag ctggtttgtg gattttgacc ctgtgcgcgc caaagccgcc gccctaagcg
     2221 aaggcaaaag cgaacacgaa gccaaccttg cggcaatgtc ggtgatttgt ggtaaagaca
     2281 ccagcgagtt aaacgacacc gaatacaaag cgctttggca aatcgccgaa gccttcccaa
     2341 gtgagtttgg agatgaaggg ttacctattg gctggaaatt caatcaagca gacaatttat
     2401 ttgatgttgg tattgggaaa accccaccaa gaaaagagag tgaatggttt tctgataatg
     2461 caaatgatac agaatggatt tctattaaag atatgggaaa tcagggatta tttatcacag
     2521 aaagtagcga atatctaaaa gctgaagccg tagatacatt taatattaaa agaattcctg
     2581 aaaatactgt aattttgagt tttaaattaa ccgttggtag agtttcaatt acgacaaaag
     2641 aaacaactac taacgaagct attgctcatt ttaaaattcc tag
//
LOCUS       DANLVT010000184         2669 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.185, whole genome shotgun sequence.
ACCESSION   DANLVT010000184 DANLVT010000000
VERSION     DANLVT010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2669)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2669)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2669
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.185"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..1277
                     /gene="cpxA"
                     /locus_tag="PXC99_002459"
     CDS             <1..1277
                     /gene="cpxA"
                     /locus_tag="PXC99_002459"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="envelope stress sensor histidine kinase CpxA"
                     /protein_id="HDL5418862.1"
                     /translation="KFDARKFSPLSAKDQIFFKNESFETGKSLNLDEVFDRNLSVETP
                     NGFDVILEDKKTGNLSGVNQSNIKALQFFIYQSQQTEEPLQRRFENSEIYGPFVVKSE
                     NHTYNQYFIKAVDAQKEWINTILDSPFIMAVLLMFAGIPLLIWLSFKITKPVKELTIS
                     ANAVASGNLETNPKLEAEWIYEIGEVGKSFNHMVISLKNLTQQQQRMISDISHELKTP
                     LARLQLAIAILRRKTCGLAEIDRIEAEVGKLDQLIKDLLTISREQLNYQIHKKIFVID
                     EIWNNVIEDAKFETSQNNIIFIIKQNIKNPESYSINGAVGLLASALENLIRNGQKYAK
                     KMLSVSMNVEDGHLFLTVEDDGEGVPENEYENILKPFYRVDEARARETGGAGLGLAIV
                     QNVVKQHQGTIHLDKSNMGGLKIELKLPLWRS"
     gene            1327..>2669
                     /locus_tag="PXC99_002460"
     CDS             1327..>2669
                     /locus_tag="PXC99_002460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL5418863.1"
                     /translation="MKLIEIENLNKYFGLGQTRAHILKNINLSIERGDFVAIIGASGS
                     GKSTLMNIIGCLDTASSGICRIDGKETQTMSADELSDLRQRKLGFIFQRYNLLSALNA
                     NENVALPAIYAGMDSSSRKKRADTLLTKLGLSDKTQHKPNELSGGQQQRVSIARALMN
                     GGEIILADEPTGALDSKSGETVLEILRDLHYEGHTIIMVTHDPNIAAQASRIVEIKDG
                     QIIRDERQRTDVQETALNKTTTQKPRFWNQLFESFKMATSAIMAHKMRAILTMLGIII
                     GITSVISVVALGRGSQQQILSNINNLGTNTMDIMNGTGFGDRRANLTKNLTISDALML
                     SRQNYVESTTPSSNVSATLIYGNTAVTGSVRGVGEQFIDVKGLKLISGRFFSAEEVKN
                     VAQVIVIDPNTQKDLGLTEPVEGKTILVDKKPLQIIGVAQQSNNMNQSSLTLWAP"
BASE COUNT          927 a          474 c          527 g          741 t
ORIGIN      
        1 ataaatttga tgctcgcaaa ttttctcccc tttctgcaaa agaccaaatt ttctttaaaa
       61 atgaaagctt tgaaacaggg aaaagcttaa atttagatga agtttttgat agaaatttat
      121 cagttgaaac acctaatgga tttgatgtaa tcctagaaga taaaaaaact ggtaatttaa
      181 gtggcgtaaa ccaaagtaat attaaagcat tgcagttttt tatttatcaa tcacaacaga
      241 ctgaagagcc gttacaaaga cggtttgaaa atagtgaaat ctatggtcca tttgtcgtga
      301 aatccgaaaa ccatacttat aaccaatatt ttattaaagc ggtagatgct caaaaagagt
      361 ggattaatac gattttagac tcacctttta ttatggcagt attacttatg tttgccggaa
      421 ttcctttatt aatatggtta tcctttaaaa ttaccaaacc ggttaaagaa ttaactatct
      481 cggcaaatgc ggtagcctct ggtaatttgg aaactaatcc taaattagaa gcagaatgga
      541 tctatgaaat tggggaagtt ggaaaaagct ttaatcatat ggtgataagc ttaaaaaact
      601 taactcagca gcaacaaaga atgatttcgg atatatctca tgagttaaaa acacctttag
      661 ccagattaca actcgctatt gctatattac gccgtaaaac ctgtggtctg gcagaaatcg
      721 atcgcattga agcagaagta ggtaaattag accaattgat taaagacttg ttaacaatat
      781 cacgtgaaca attaaattat caaattcata aaaaaatttt tgtaattgat gaaatttgga
      841 ataatgtaat tgaagatgct aaatttgaaa cctcacaaaa taatattatt tttatcatca
      901 agcaaaacat caaaaacccc gaatcttatt ctattaacgg ggccgtaggt ttactggcta
      961 gtgctttaga aaatttgatc cgaaacggcc aaaaatatgc aaaaaaaatg ctgtcggtct
     1021 caatgaatgt agaagatggt catttatttc tcacagttga agatgatggc gagggggttc
     1081 ctgaaaacga atatgaaaat attcttaaac ctttttaccg cgtagatgaa gcaagggcaa
     1141 gagaaacagg aggagccggg ctaggattag cgattgtgca aaatgtagtt aaacagcacc
     1201 aaggtactat tcatttagat aaaagtaata tgggaggatt aaaaatcgaa ctgaaacttc
     1261 ccctttggcg ttcctaaggc aaaaagcata tcgtttgtaa aaaacagtcg aaaaataacc
     1321 gcttgtatga aattaattga aatagaaaat ctcaataaat actttggctt ggggcaaacc
     1381 cgagcccata ttctaaaaaa tatcaatctc agtattgaac ggggtgattt tgtcgcaatt
     1441 ataggtgctt caggttctgg caaatctacc ttaatgaaca ttattggctg tttagatact
     1501 gccagctcag gtatttgccg tattgatggc aaagagaccc aaacaatgtc tgcagatgaa
     1561 ctgtctgatt tacgccaacg taaactgggg tttattttcc aacgctataa tctcctttca
     1621 gctttgaatg caaacgaaaa tgttgcccta cctgcaattt acgccggaat ggatagctca
     1681 tcacgcaaaa aacgagctga tacgttatta acgaagttag gattatcaga taaaacccaa
     1741 cataagccga atgagttatc tggggggcaa cagcaacgag tcagcattgc acgagcctta
     1801 atgaacggcg gtgaaatcat tcttgcagac gagcctaccg gtgcattaga ttctaaaagt
     1861 ggcgaaactg tattggaaat cttgcgagat ctacactacg aaggtcatac cattattatg
     1921 gtaacacacg acccaaacat tgccgctcaa gccagccgta tcgttgaaat taaagatggg
     1981 caaatcattc gagatgaacg ccaacgtact gatgttcaag aaacggctct caataaaacg
     2041 acaacacaaa aacctcgctt ttggaatcaa ctgtttgaat ccttcaaaat ggcaaccagt
     2101 gcaattatgg cgcataaaat gcgggcaatc ctcacgatgc tgggcattat tattggcatt
     2161 acctctgtga tttccgtagt cgctctcggt cgaggctcgc aacaacaaat cctttctaat
     2221 atcaacaacc taggcacaaa tacgatggat attatgaatg gaaccggctt tggcgataga
     2281 agagccaatc tgactaagaa tttaaccatc agtgatgcct taatgttgag tcggcaaaac
     2341 tatgtggaaa gcactactcc ttcaagcaat gtcagtgcca cattgattta tggtaatacc
     2401 gcagtaaccg gttcagtacg aggtgttgga gagcaattta ttgatgtgaa aggattaaag
     2461 ctgatttcag ggcgcttttt cagtgccgag gaagtaaaaa atgtagcgca ggttattgta
     2521 attgacccta acactcaaaa agatttgggg ctaacagagc ctgttgaagg taaaacgatt
     2581 ttagtggata aaaaaccgtt acaaatcatt ggtgtggcgc aacagtcaaa caatatgaac
     2641 caaagtagcc ttaccttatg ggcgcctta
//
LOCUS       DANLVT010000185         2643 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.186, whole genome shotgun sequence.
ACCESSION   DANLVT010000185 DANLVT010000000
VERSION     DANLVT010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2643
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.186"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(368..1360)
                     /gene="mglB"
                     /locus_tag="PXC99_002461"
     CDS             complement(368..1360)
                     /gene="mglB"
                     /locus_tag="PXC99_002461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
                     /protein_id="HDL5418864.1"
                     /translation="MKRTILSAFALSVICGVNLSYAQSESRVGVTIYKYDDHFMTQMR
                     KDMQNEAKGFAGLKWFMNDAQNSQVKQLAQIETLLQHKMRVLAVNIVNANESKTIVEK
                     AKAYNVPVVFFNRTPSKQALESYEKAYFVSADPKEAGRIQGELIAKVWKSNPDFDLNK
                     DGKLQFVLLKGEPSDVSAERSQAVVESLNQQGVQAEEIYSDTARWRRTLARNKMNEWL
                     VENRAAEIEVVISNNDEMAIGALDALNAHEKRLPIFGIDALPETLALMKKGEIAGTVL
                     NDSSAQAKAVVKLVSNLAQGKPALKDTQWESHSSKTIYLPHIGIDKENLGQFLP"
     gene            complement(1445..1858)
                     /locus_tag="PXC99_002462"
     CDS             complement(1445..1858)
                     /locus_tag="PXC99_002462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PACE efflux transporter"
                     /protein_id="HDL5418865.1"
                     /translation="MTAWERVFHALLFECFAIIFTVILTSWLTSHRMVDLTAVIVMIS
                     VIAMVWNVIFNWGFDKVFTGERVQRGLGIRILHSFLFEGGLLVFTIPLVMYMLDIGWW
                     QAFVMDIGMTLFVLVYSVVFNWVYDHLRLRWVKSG"
     gene            1978..2265
                     /locus_tag="PXC99_002463"
     CDS             1978..2265
                     /locus_tag="PXC99_002463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL5418866.1"
                     /translation="MKNDKPIECEGCNTFDVGSILDNSETVATIQRTYESENEAKAAL
                     EKFTQKARDVESEPCEISSEITPIESGFELVAHFKFSCQAEVVIFQLGTRF"
     gene            complement(2311..>2643)
                     /locus_tag="PXC99_002464"
     CDS             complement(2311..>2643)
                     /locus_tag="PXC99_002464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HDL5418867.1"
                     /translation="DELVTINEKIVNLTYGDQDALNIYFKGGWGALPIEYNYQVDAIL
                     ELVLRREQEELARKNGYLDVIPKIIHYTSKFKPWKKELHTMQISTRKKYWFYYHLEWN
                     DILEQHQK"
BASE COUNT          830 a          600 c          417 g          796 t
ORIGIN      
        1 tgttacacca atacggtttt cagcttgagc tgtactgatc gttgcaccta atgcgactgc
       61 cattgccact gcacttaata ctgctttctt catagtagat cacctctttt atgtgtttat
      121 agggaaatga attgcttacc ataagcaact tggtgcaaag tataactaat tttaaaaaaa
      181 caatccgtga tcattctcac agaattaaga caaagtggag aaatttttaa ttttaagtat
      241 aaaatttgaa tattcgctct attcaaatct gttggaagaa aagagaaagg atttgcaaga
      301 ttttactgaa aaatgaccgc ttgttatcat caataagggg cgtatttata acgccccgct
      361 cctccattta aggtaaaaat tgccctaaat tttccttatc aataccaata tgtggaagat
      421 aaatcgtttt agaggaatgg ctttcccact gcgtatcttt cagcgcaggc ttaccttgtg
      481 ccaaattaga taccaatttc accaccgctt tcgcttgtgc agagctatca tttaataccg
      541 tgccggctat ttcccctttt ttcattaatg ctaacgtctc aggcaaggca tcaataccaa
      601 agatcggcaa tcttttctcg tgtgcattta acgcatctaa agcaccaatt gccatttcat
      661 cattgtttga aatcacaact tcaatctcag ctgcacggtt ttccaccagc cactcattca
      721 ttttattgcg agccaatgtt ctacgccatc tcgccgtgtc actgtaaatt tcttctgcct
      781 gaacaccttg ttgattaagc gattcaacca cagcttgaga acgctcagcg ctcacatcac
      841 tcggctcgcc cttaagcaat acaaattgca atttcccgtc tttatttaga tcgaaatcgg
      901 ggtttgattt ccacactttc gcaattaatt ccccttggat tctaccggcc tctttaggat
      961 cagcgctcac aaagtacgcc ttttcgtaac tttctaacgc ttgtttactc ggtgtgcggt
     1021 taaaaaagac aaccggcaca ttataagcct tcgctttttc cacaatagtt ttcgactcat
     1081 ttgcattcac aatattcacc gccaacacac gcattttatg ctgaagtaag gtttcaattt
     1141 gcgctaattg cttcacttgg gaattttgtg catcattcat aaaccacttc aacccagcga
     1201 agcctttcgc ctcgttttgc atatccttac gcatttgagt cataaaatgg tcatcatatt
     1261 tgtaaatcgt tacccccact ctgctttcag attgtgcgta acttagattc acaccgcaaa
     1321 taacagaaag tgcaaaagca ctcaagattg tacgcttcat agaatgtccc tcttgctatg
     1381 ccaaatatga accaattcaa gcatagcgaa ttttgtgtaa ggaaaccgtg atctagttca
     1441 caatttagcc agatttaacc cacctcaggc gtaaatgatc gtacacccaa ttaaaaacta
     1501 ccgaataaac taatacaaat aaggtcattc caatatccat cacaaacgcc tgccaccagc
     1561 cgatatcgag catatacatt accaatggga tagtaaaaac cagcaaaccg ccctcaaaaa
     1621 ggaatgaatg caaaatacga atgcctaaac cacgttgcac tcgctcaccg gtaaacacct
     1681 tatcaaaacc ccagttaaaa ataacattcc acaccattgc aatcaccgaa atcatcacaa
     1741 tcactgcggt taaatcaacc atacgatgag aagtcagcca agaagttaag ataaccgtaa
     1801 aaataatagc gaaacattca aataacagcg cgtgaaacac acgctcccaa gcggtcattt
     1861 ttcctccaaa ctttgcaaaa taccaactaa atcaaataat cgttcactga tgattgcagg
     1921 ttacgcaatt tagttttaaa gtacctacat tattcatcaa tttagaagga ttagccaatg
     1981 aaaaacgata aaccgattga atgcgaaggc tgtaacacat ttgatgtagg ttctatttta
     2041 gataacagcg aaacagtcgc tactattcag cgcacttatg aaagcgaaaa tgaagctaaa
     2101 gcggcacttg aaaaattcac tcaaaaagcc cgtgatgtcg aatctgaacc ctgtgaaatc
     2161 agcagtgaaa tcaccccgat tgaaagcggt tttgaactgg ttgctcactt caaatttagc
     2221 tgccaagcag aagtggttat ttttcaatta ggaacacgtt tctaatacaa aaagctgatt
     2281 caaacacttg aatcagcttt tgtatgatag ctatttttga tgttgttcca aaatatcgtt
     2341 ccactctaaa tgatagtaaa accaatattt tttacgcgta gatatttgca ttgtatgcag
     2401 ttcttttttc caaggtttga atttactcgt atagtggata attttcggaa tcacatctaa
     2461 atagccattt tttctcgcaa gttcctcttg ttctcttctt aatactagtt caagaattgc
     2521 atcaacttga taattatact ctatcggcaa tgctccccaa ccgcctttaa agtaaatatt
     2581 gagagcatct tgatcgccat aagttaagtt tacaattttt tcattgatag taaccaactc
     2641 atc
//
LOCUS       DANLVT010000186         2597 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.187, whole genome shotgun sequence.
ACCESSION   DANLVT010000186 DANLVT010000000
VERSION     DANLVT010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2597)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2597)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2597
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.187"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(113..397)
                     /gene="raiA"
                     /locus_tag="PXC99_002465"
     CDS             complement(113..397)
                     /gene="raiA"
                     /locus_tag="PXC99_002465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005823326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HDL5418868.1"
                     /translation="MSLNISSKQMDITPAIRTHIEERLAKLEKYHTQLINPHFMLIKQ
                     PNSFQVEATIGTPLGDLVAKAEHEDLYTAIFDVKKKLEGQLIKLKEKNEH"
     gene            577..1518
                     /locus_tag="PXC99_002466"
     CDS             577..1518
                     /locus_tag="PXC99_002466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LpxL/LpxP family Kdo(2)-lipid IV(A)
                     lauroyl/palmitoleoyl acyltransferasee"
                     /protein_id="HDL5418869.1"
                     /translation="MSEKKQLPPFQTQFLHPKYWGLWLGLGVFKLILCLPYPILVKIG
                     LGLGKLFTKLGFGKRRMRIARRNLELCFPHYSAEKVEELVEENMKSVGMAIIETGMAW
                     FWSDKRILKWSKIEGLEHLTQRDQERGILLVGVHFLTLELGARIIGLHHQGVGVYRPN
                     DNPLLDWIQFRGRVRSNKAMLDRKDVRGMIRALKNGEMIWYAPDHDYGRRNSVFVPFF
                     AVEETCTTAGSYMLLRSAPKSLVIPFSPIRNLDYSGYTVKVSPAVDFSQCQNEVETAI
                     LMNRVVEREIMAALTQYMWLHRRFKTRPNEGDQSLYD"
     gene            1614..2501
                     /gene="dapA"
                     /locus_tag="PXC99_002467"
     CDS             1614..2501
                     /gene="dapA"
                     /locus_tag="PXC99_002467"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HDL5418870.1"
                     /translation="MATPLFHGSIVALVTPMTHGEVDYQDLKKLVEYHIQAGSHAIVS
                     VGTTGESTTLSIDENVKVIKKTVEFADGRIPIIAGTGSNATSEAITMTKLLANSGVAG
                     CLSVVPYYNKPTQEGMYLHYKAIAESTDLPQILYNVPGRTGSDLKPETIGRLAKIENI
                     VAVKEATGDLSRLPLIKQLAGEDFIFLSGDDATGFESMKLGGQGVISVTNNVAAADMA
                     KMCELALAGQFTEAEEINNRLMALHHDLFVESNPIPVKWAAYKLGLISEPNLRLPLTT
                     LSESAQPVVLKALQQAGLI"
BASE COUNT          807 a          403 c          534 g          853 t
ORIGIN      
        1 ggtatatttt tgcgaaaaat acggtaaatt ttaccgctta ctcttggaat aaaaaatagg
       61 gctaaatgat atctctcatt tagcccttat tattagatgt aaagtttaaa catcaatgtt
      121 catttttctc ttttagttta attaactgac cttctaattt cttcttaaca tcaaaaattg
      181 cagtatataa atcttcatgt tcagctttag cgactaaatc acctaaaggg gtgccaattg
      241 ttgcttcaac ttggaatgag ttaggttgtt ttatcagcat aaaatgtggg tttatcaatt
      301 gggtgtggta tttttctaac ttagctaaac gctcctcaat atgagtacgg attgcagggg
      361 taatgtccat ttgtttgctt gaaatattta atgacataac attttcctct tgtttagtta
      421 aggcttttgc cgttgatatt ctaataacca aaatatgctc atcactccaa aaattcaagt
      481 gaaaaatgaa ataagtttcc aaaaatttga tctacttaac acttttagca gtttttagct
      541 ataatgtaat cataatctag tatgtgagaa taattaatga gtgagaaaaa acagttacct
      601 ccattccaga cacaattttt acaccctaaa tattggggat tgtggctcgg tttaggtgtt
      661 tttaagttaa ttttatgttt gccttatcct attttagtaa aaattggtct gggactaggt
      721 aaattgttta ctaaattggg ttttggtaaa cgtcgtatgc gtattgctcg ccgtaattta
      781 gagctctgtt ttccccatta ctctgctgag aaagtagagg aattagtcga agaaaatatg
      841 aaatcggttg gaatggcgat tattgaaact ggtatggctt ggttttggtc ggataaacgt
      901 attcttaaat ggtctaaaat cgaagggcta gagcatttaa cacagcgtga tcaggaaagg
      961 ggtattttac ttgtaggggt gcattttctg actttagaac tcggtgcaag aattattggg
     1021 ctacatcatc aaggagtagg ggtttatcga ccgaatgata atccattatt agattggata
     1081 cagtttcgag gacgtgttcg ctcaaataaa gcgatgttag atcgtaaaga tgtgcgtgga
     1141 atgattcgag ctttaaaaaa tggcgagatg atatggtacg cgcctgatca cgattatgga
     1201 agacgaaata gcgtttttgt accatttttt gcagtggagg aaacttgtac tactgcgggt
     1261 agttatatgt tacttcgttc tgccccaaag agtttagtga tcccgtttag cccgattcga
     1321 aatttggact attcaggcta cacagtaaaa gtcagtcctg ccgttgattt tagtcaatgt
     1381 caaaatgaag ttgaaacggc tattttaatg aatcgggtgg tagaacgtga aattatggct
     1441 gcgctaactc aatatatgtg gctacatcgc cgttttaaaa ctcgcccaaa tgaaggtgat
     1501 caaagcctat atgattaatt ttaaataatt tcaaaaaagt gcttgcatat ttaagctgaa
     1561 ttttgcaatc tagcaatgtt atcaagcata ataaaaaaat acaggagatg attatggcga
     1621 cccctttatt tcacggtagt atcgtagcat tagttacacc aatgactcat ggtgaggtag
     1681 attatcagga tttaaaaaaa ttagttgagt atcatattca agcaggttct cacgctattg
     1741 tatctgttgg tacaacaggt gaatctacca cattaagcat tgatgaaaat gttaaggtga
     1801 ttaagaaaac ggttgaattt gctgatggac gtattccaat tattgcagga actggttcta
     1861 atgcgaccag tgaagctatc actatgacta aattattagc aaacagtggt gtagctggtt
     1921 gtttaagtgt agtgccttat tacaacaagc caacgcaaga ggggatgtac ttacactaca
     1981 aagcgattgc agaaagtaca gatttaccac aaattctgta taatgtgccg gggcgaacag
     2041 ggagtgattt aaaacctgaa acaatcggtc gcttagcgaa aattgagaat attgttgctg
     2101 tgaaagaagc aacgggtgat ttaagccgct tacctttaat taagcaatta gccggtgaag
     2161 attttatttt cttaagtggt gatgatgcta ccggttttga gtctatgaaa ttaggtggtc
     2221 aaggggtgat ctcggtcacc aataatgttg ctgctgctga tatggcaaaa atgtgtgagt
     2281 tagctcttgc cggtcaattt actgaagcag aagaaattaa taaccgctta atggcgttac
     2341 accatgactt atttgtcgaa tctaacccga ttccggtgaa atgggctgct tataaattag
     2401 gtttaattag tgagcctaat ttacgtttac cgcttaccac actgtctgaa tcagcacagc
     2461 ctgtagtgtt aaaagcatta caacaagcgg gcttaattta gttatttttt gcaaatcaaa
     2521 tttgaaaccg gttaagttaa ttctaaccgg ttttttcata tctaaaagaa atttccacat
     2581 aaaaataaaa ttctaaa
//
LOCUS       DANLVT010000187         2583 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.188, whole genome shotgun sequence.
ACCESSION   DANLVT010000187 DANLVT010000000
VERSION     DANLVT010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2583)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2583)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2583
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.188"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..410)
                     /locus_tag="PXC99_002468"
     CDS             complement(<1..410)
                     /locus_tag="PXC99_002468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraI domain-containing protein"
                     /protein_id="HDL5418871.1"
                     /translation="MRSMFKKFFGKNKSQSAVKSDTIFSIEQDNEGWLYPEKASQLLN
                     TELRQKYLGLLWQQVSMNRQMFEVLYQQPIERYAEMVQLLPASESHHHSHIGGMLDHG
                     LEVIAFSAKVRQSYILPPNVAPEEQSKQRDAWTAA"
     gene            complement(514..975)
                     /locus_tag="PXC99_002469"
     CDS             complement(514..975)
                     /locus_tag="PXC99_002469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArdC family protein"
                     /protein_id="HDL5418872.1"
                     /translation="MMNTQPKFDLYQHITDRIIAALEQGTAPWLKPWSHPECNMALPR
                     NAVSNRLYSGINTLLLWIATAEHGYKQCKWITAKKANELGGYIRKGEKATVVMNYRPN
                     EREKLDEEGNIVYDEEGNPEMEQHFFIAKHNLFNLDQCENLPAELYDPVIP"
     gene            1184..1447
                     /locus_tag="PXC99_002470"
     CDS             1184..1447
                     /locus_tag="PXC99_002470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme-like superfamily protein"
                     /protein_id="HDL5418873.1"
                     /translation="MRPVTRNNRGTSFDPRHNKYINTLATALLARWHIEQFSERNIPV
                     NDENLYMAHNIGLDGFHRALLGQSTRKDIENMRKNGMKPWMSI"
     gene            complement(1531..2556)
                     /locus_tag="PXC99_002471"
     CDS             complement(1531..2556)
                     /locus_tag="PXC99_002471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03752 family integrating conjugative element
                     protein"
                     /protein_id="HDL5418874.1"
                     /translation="MTAGDTPHDTLKTLVGALKDTREEARKANERGDRFEQEVLRLQA
                     REAEVDSRIAGEVESRVESRLAAAWDGFNRQIEELKGRVQSGNQQQKEAEAIPVGGAS
                     SGFGTESAGQTGNVDNNGIRWVDPDDMVVTDEQGKPVTGNYSGKTKTGFPSPFKAEGE
                     SSNTGTALNNNAGTENMTGNTQIQQIKRTPYYTIPENSTLMGSTAMTALLGRVPIQGA
                     VTDPFPFKVLIGRENLIANGIDLPDVEGAIVSGTSTGDWTLSCVRSEVTSITFVFADG
                     RISNGRASGESRAVKRNQASNLTPFCLTVSLSGFNDIPHSDGNPGFLTMSAVDYVDVY
                     LMSHLAR"
BASE COUNT          711 a          585 c          497 g          790 t
ORIGIN      
        1 gcagcagtcc aagcatctcg ttgctttgat tgttcttcgg gagctacatt cgggggcaaa
       61 atatagcttt gacgaacttt agctgaaaaa gcaataactt ctaaaccgtg atcaagcatt
      121 ccaccgatat gtgaatgatg gtgtgattca gaagctggta atagttgaac catctcagcg
      181 taacgttcta ttggctgctg ataaagtacc tcaaacattt gacggttcat tgatacctgt
      241 tgccaaagta gcccaagata tttttgtcgt aattctgtat taagtaattg agaggctttt
      301 tccgggtata accacccttc attatcttgc tcaatagaaa aaatagtatc ggatttgacc
      361 gcactttgag atttattttt accaaaaaat tttttgaaca ttgaacgcat tggaagagac
      421 cgaaaatatg aatgctgtat tgaatgaaag ccgtttagcc ctttgccctt ttgggtaaga
      481 cctttcccct tggaaaggtt actcttatcc cccttagggg attacaggat cgtacagttc
      541 cgccggtaaa ttttcacact ggtctaaatt gaacagattg tgcttagcaa tgaaaaagtg
      601 ttgttccatt tccggatttc cttcctcgtc atacacaata tttccctcct catcgagttt
      661 ttctctctca ttaggacggt agttcatcac aacagtagct ttttcccctt tacggatata
      721 tccgccgagt tcattggctt ttttcgccgt aatccactta cactgtttgt agccgtgttc
      781 agcggtagca atccaaagca ataacgtatt gataccggaa tacagacggt tagaaaccgc
      841 attgcgaggt aatgccatat tgcattccgg atggctccac ggttttaacc acggagctgt
      901 accttgttcc aatgcagcaa tgattctatc agtaatatgt tggtataaat caaatttagg
      961 ttgagtgttc atcatgtgtt tctccaaagt ttgggtaaaa aaatggggaa acacggttac
     1021 cctatgggga acttgtttcc ccgatgggta gtttataaaa tttcaatggc cacaattttt
     1081 ctagaatcat caaagccaac agaactgcct atggcgtagt aattacgaat agtctgttca
     1141 tcggcattga ttagcagata cctatcgagg aagagagatt gggatgagac cggtaacgag
     1201 aaataatcgt ggaaccagtt ttgaccctcg tcacaataaa tacatcaata cattggcaac
     1261 cgcattattg gcacgttggc atattgagca attctctgag cgtaatatcc cagtcaatga
     1321 tgaaaatctc tatatggctc acaatattgg cttagatggt ttccatcgag cgttattagg
     1381 gcaatctact cgtaaagaca ttgagaatat gcgtaagaat gggatgaaac cttggatgtc
     1441 catttagctc tgttttcaaa tgacctaatc cagtttgttc cggagagagt accgaaattt
     1501 tgcactcttt catccgtggt gtatcaaact tcaacgtgct aaatgagaca ttaaatatac
     1561 atcaacataa tctaccgcac tcatcgttaa gaaaccggga ttcccatcag aatgaggaat
     1621 atcgttaaag cccgataagg agacggttaa acaaaatggt gttaaattac ttgcttgatt
     1681 tcgtttcaca gctctgcttt ctccactcgc tcgcccattc gaaatacgac cgtctgcaaa
     1741 cacaaaggta atgctcgtta cctcagaacg aacgcaagat agcgtccaat ctccggttga
     1801 tgtaccggat acaatcgccc cctcaacatc aggtaaatca atgccattgg caattaaatt
     1861 ttctcgcccg attaatactt taaacggaaa cggatctgtc acagcacctt gaataggtac
     1921 acggcctaac aatgccgtca tcgcagtaga acccattaaa gtcgaatttt cgggaatagt
     1981 gtaataaggt gtacgcttta tttgctgtat ctgagtatta ccagtcatat tttctgtccc
     2041 agcattatta tttaatgctg tcccagtatt tgaactttcc ccctctgctt taaaagggct
     2101 tggaaagccg gtttttgttt tcccggaata attgcctgta accggtttac cttgttcatc
     2161 ggttaccacc atatcatcag gatcgaccca gcgaatgcca ttgttatcta cattccctgt
     2221 ttgtcctgct gattcagtcc caaagccaga agaagcccct cctacaggga ttgcctctgc
     2281 ttctttctgc tgctgattac cactttgaac ccgacctttc agttcttcga tttggcgatt
     2341 aaatccatcc caagcagcag ccaaacggct ttctacacga ctttctactt cacccgcaat
     2401 acgagaatcc acttcggctt ctcttgcttg taagcgtaat acctcttgct caaagcgatc
     2461 accacgctca tttgctttac gagcttcttc acgagtatct tttaatgctc ctaccaacgt
     2521 ttttaatgta tcgtgaggcg tatctcctgc agtaatacct aatgtattcg cctcctcatc
     2581 act
//
LOCUS       DANLVT010000188         2552 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.189, whole genome shotgun sequence.
ACCESSION   DANLVT010000188 DANLVT010000000
VERSION     DANLVT010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2552)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2552)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2552
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.189"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            11..988
                     /locus_tag="PXC99_002472"
     CDS             11..988
                     /locus_tag="PXC99_002472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1852 domain-containing protein"
                     /protein_id="HDL5418875.1"
                     /translation="MTTNFKCQVHTIEFNEDYQPEQSTRLTTNFANLARGENRKQNLQ
                     NAIAMINNRFNDLANWDNPNADRYSVKLDIVSLDIDVEGKGEFFPAIEWLKTYVIDYK
                     TGKTIDGIIGNNFSSFVRDYDFSVLLLDHNKDKPQFSVPEGYGELHGKLFKHLLASPE
                     YTAKYKKPPVICLSVATTRTYTRTTNVHPILGVEYLQDSYSLTDAYFAKMGLKVRYFM
                     PPKSVAPYAFYFDENADLLNDYTNLELISTIATMEAFQKIYRPEIYNANSVAGQVYKG
                     SLTYQDYSVTKVEYDREERTQLAIKQGKYTEEHFIKRYQAILEAWATEE"
     gene            1076..2107
                     /locus_tag="PXC99_002473"
     CDS             1076..2107
                     /locus_tag="PXC99_002473"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HDL5418876.1"
                     /translation="MSNILLPTSTAGSLPKPSWLAEPEKLWSPWKFEGEELLQAKRDA
                     LLVSLAEQIAAGIDIVSDGEQTRQHFVTTFIEHLEGVDFSKREIVRIRNRYDASVPSV
                     VGAVSRPKSVFVDDAKFLRAHTDKPIKWALPGPMTMIDTLYDGHYKSREKLAWEFAKI
                     LNEEAKELEAAGVDIIQFDEPAFNVFFDELNDWGVAALERAAEGLKCETAVHICYGYG
                     IKANTDWKQTLGNEWRQYEESFPKLQQSKIDIISLECQNSRVPMDLIELVRGKKVMLG
                     AIDVATNIIETPEQVADTLRKALQFVDADKLYPSTNCGMAPLSRQVAQGKLQALSQGA
                     AILRAEFAK"
     gene            2195..2416
                     /locus_tag="PXC99_002474"
     CDS             2195..2416
                     /locus_tag="PXC99_002474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418877.1"
                     /translation="MLNLFKKPIKKSSFEAWAKLMDDVAKVAILAIPVILYGEYSLLM
                     KFTHSITLFAVVYFLLATARLFRETAEEM"
BASE COUNT          783 a          547 c          569 g          653 t
ORIGIN      
        1 ggacaataaa atgacaacaa attttaaatg ccaagtgcat actattgaat ttaatgaaga
       61 ttaccaaccg gagcaaagca cccgtttaac caccaacttt gccaaccttg cccgtggcga
      121 aaaccgcaaa cagaacctgc aaaatgcgat tgcgatgatc aataaccgtt ttaacgattt
      181 agcgaactgg gataacccga atgcggatcg ttattcggtg aaattggata ttgtctcact
      241 ggatattgat gtggaaggca aaggcgagtt tttccctgcg attgagtggc tgaaaaccta
      301 tgttatcgac tacaaaaccg gcaaaaccat tgatggcatt atcggtaata acttctcttc
      361 ttttgtgcgt gattacgatt tcagcgtatt gttgttagat cacaataaag acaaaccgca
      421 atttagcgtg ccggaaggct atggcgagtt acacggcaag ctgtttaagc atttattggc
      481 atcgcctgaa tataccgcaa aatataaaaa accaccggtg atctgtttaa gcgtggcaac
      541 cacccgtacc tacacaagaa ccactaacgt tcacccaatt ttaggtgtgg aatatctgca
      601 agatagttat tcattaactg atgcctattt tgcgaaaatg ggcttaaaag tacgttactt
      661 tatgccgcca aaatccgttg caccctatgc gttctacttt gatgagaatg cagatttact
      721 caatgattac actaacttag agctaatcag cacgattgcc acaatggaag cgttccaaaa
      781 aatttaccgt ccggaaattt acaatgccaa ttcggtcgca gggcaggtct ataaaggcag
      841 cctgacttac caagattatt ccgtcaccaa agtggaatat gaccgtgaag aacgcaccca
      901 gttggcgatc aaacagggta aatacaccga agagcatttt attaaacgtt accaagcgat
      961 tttagaggct tgggcgacgg aggaataaac gtagggtggg cgtaagccca ccataaaatg
     1021 agatataacc aatggtgggc ttacgcccac cctacttttt ataggaaaat tcaaaatgag
     1081 caacattctt ctcccaacct ctaccgccgg cagcctacca aaaccttcgt ggcttgccga
     1141 gccggaaaaa ctgtggtcac cttggaaatt tgaaggcgag gaactacttc aagccaaacg
     1201 tgatgccctc cttgtttccc ttgccgaaca aattgcggca gggattgata ttgttagtga
     1261 tggcgaacag acccgccagc actttgtgac cacctttatc gagcatttgg aaggggtgga
     1321 ttttagcaag cgtgaaatcg tgcgcattcg taaccgttac gatgccagcg tgccgagcgt
     1381 ggtgggggca gtttcccgcc cgaaatcggt gtttgtggac gatgccaaat tcttgcgtgc
     1441 gcataccgac aaaccaatca aatgggcatt acccggcccg atgacaatga tcgacactct
     1501 ctatgacggt cattacaaaa gccgtgaaaa attggcgtgg gaatttgcca aaattctcaa
     1561 cgaagaagcc aaagagttgg aagcggcagg ggtggatatt attcaatttg acgaaccggc
     1621 atttaacgtc ttcttcgatg agctgaacga ctggggcgtg gcggcgttag agcgtgcggc
     1681 ggaaggctta aaatgcgaaa cggcggtgca tatctgctac ggctacggca ttaaagccaa
     1741 taccgactgg aaacagaccc tcggcaacga atggcgtcaa tacgaagaga gtttcccgaa
     1801 actgcaacaa tcaaaaatcg acattatctc gttagagtgc caaaactccc gtgtgccaat
     1861 ggacttaatc gaattagtgc gtggcaaaaa agtaatgctg ggagcgattg atgtggctac
     1921 caacattatc gaaacaccgg aacaagtggc agatacgtta cgcaaagcat tacaatttgt
     1981 cgatgcggat aaactttatc caagcaccaa ctgcggaatg gcaccacttt cacgccaagt
     2041 cgcacaaggt aaattacagg cactcagcca aggggcagcg atattgcgtg cggaattcgc
     2101 aaaataattt tgcgatctgc atcgaaaata tcaactttgc tttttgctcg tttccagatt
     2161 ttcttccaaa ataacaggaa atgacggagg cactatgcta aatctattta aaaagccaat
     2221 taagaaaagc tcctttgagg cttgggcaaa actaatggac gatgtggcaa aagttgcaat
     2281 tttagcaatt cctgttattc tctatggaga atattcactg ctaatgaaat ttacacactc
     2341 aattacctta tttgcagtag tttatttttt gttagcaacg gcaagattgt ttcgagaaac
     2401 agcagaggag atgtaaatgg acggattgac aatcggatta tttcttttgc ttgcattttc
     2461 atttgctgca taccaatggg caaagcattt aaaagatcat aatcattaat tcaatgaata
     2521 atactaagcg gtcatatttg gtaaattttt ta
//
LOCUS       DANLVT010000189         2482 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.190, whole genome shotgun sequence.
ACCESSION   DANLVT010000189 DANLVT010000000
VERSION     DANLVT010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2482)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2482)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2482
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.190"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            537..915
                     /gene="rnpB"
                     /locus_tag="PXC99_002475"
     ncRNA           537..915
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="PXC99_002475"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            976..1614
                     /locus_tag="PXC99_002476"
     CDS             976..1614
                     /locus_tag="PXC99_002476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1007 family protein"
                     /protein_id="HDL5418878.1"
                     /translation="MKFIKTIITLIALYSMPVFSHPHSFVDLKTNVIVEGSMLKSFQM
                     EWMLDEIASSELIYEVKNSQDKEKTQQNITAEMVQTALQNHYFSTLYDSQNQPIKFTT
                     KPTATRFEIKNNRVIFYITFHLAKPHELKQSKVRFYTYEPSYYIAMEYNRPADVNTSN
                     ASCKATLVQPQVDSKLRLYASGLDKNQSLDMPENGDYSLGAQFAQKVEIICD"
     gene            1605..>2482
                     /locus_tag="PXC99_002477"
     CDS             1605..>2482
                     /locus_tag="PXC99_002477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel/cobalt transporter"
                     /protein_id="HDL5418879.1"
                     /translation="MRLKATYWGMIVIGFLSLFALYQLYPMILFKVMEWQKNFNLQLS
                     ASLNELAENQSKAGITLVFISFLYGVFHAVGPGHGKFILSSYLSFEKTKLNQAMKITF
                     ASALVQGLVAISLVTVIVVIFTLSRQYFNLTLKWVERGSFGLMILFGIYWCYQVYRTV
                     NRARKPIIKSIRISQKKAGKLPLVTQKGHIHTENCSCRHKHLPTSNEMQQVRDWKAQL
                     MLVLSIGSRPCSGAILVLFLSYTLNLYAWGVISALAMAVGTGLTLSLFAYLVIIARNK
                     AVKVSQWYFSAQINRN"
BASE COUNT          785 a          395 c          536 g          766 t
ORIGIN      
        1 tttaaatgta attcaataat ttaatttaaa aacaattggt tataattaaa attgattgcg
       61 gtacacgccc ctgaaaatat taattcgtgc tgtcatcaac acgatcgtgg gcgtaaacgg
      121 aaaagtcagt agagcggaag cagataagcg gttaagggat tgtttgattg cgcaaaatag
      181 acctattttt gcgtggagca cttggttggc ggtaagatgt tttggatggt atttttggaa
      241 tgagaaaaaa ggaaaatagc ttgttttata atctgattaa aatttgagtt tcggaaaaat
      301 gtatatagtt tcggaaatag aaaggaaatt gattaaataa ccctttgaaa ttattgtaat
      361 aaaatagaga aaccaaaatt agttcactta gacttcaaac gtgcgtaatt tttacgagtg
      421 aattaaagcg aagaggatta agtttttaaa tgaacttaat ccttttttat tttgccataa
      481 taactacaag cggttatttc cttgcaattt tttgcgaaag cattatactc tagtgctgag
      541 ttggttaggc aatcgctggt ttattgaagc ctctaaattc gtgaaaacgt aaactggggg
      601 acaagtaaac gagaggaaag tccgagctac acagggcaga gtgccggata acgtccgggg
      661 ggcgtgagcc tacgaccagt gcaacagaga gcagaccgcc ggctttgtcg gtaagggtga
      721 aagggtgcgg taagagcgca ccgtgtgggt ggtaacattc cacagcaggg taaactccac
      781 tcgtagcaag accaaatagg aactcaatcg gtggcccgct gagagttcgg gtaggttgct
      841 tgagcgtatg tgtaaatgta cgtctagagg aatgattgtc cacgacagaa ctcggcttat
      901 cgaccaactc actaaattct tgaaatgcga acagggggaa cttgttcgct tttttatttt
      961 atagtgaaag taaatatgaa atttattaag acgattatca cgttaattgc attatattca
     1021 atgccagttt tttctcaccc acattcattt gttgatttga aaacgaatgt tattgtggaa
     1081 ggctcaatgt tgaaatcttt ccaaatggaa tggatgctag atgaaattgc ttcttctgag
     1141 ttaatttatg aagtgaaaaa tagccaagat aaagaaaaaa ctcagcagaa tatcactgca
     1201 gaaatggtgc aaaccgcatt gcaaaatcat tattttagca ccttatatga tagtcaaaat
     1261 cagccgataa aatttacgac aaagcccaca gcgactcgct ttgaaatcaa gaataacaga
     1321 gtgatttttt atattacttt tcatttagct aaacctcacg aattaaagca gagtaaagtg
     1381 agattctata cttatgaacc gagttattat attgcgatgg aatataatcg ccctgctgat
     1441 gtcaatacca gtaatgcaag ttgtaaagca acattggtgc aacctcaagt agatagtaag
     1501 ttacgcttat atgcttccgg tttggataaa aaccaatcac tggatatgcc tgaaaatgga
     1561 gattactctc ttggtgccca atttgctcaa aaagtggaga ttatatgcga ttaaaagcaa
     1621 catattgggg aatgatagtg ataggatttt tgagcctatt tgctctttat cagctttatc
     1681 caatgatatt gtttaaagtg atggaatggc aaaaaaactt taatttacag ctttccgctt
     1741 cgctcaatga attagctgaa aatcaaagta aagccggtat taccttagta tttattagtt
     1801 ttttatatgg agtatttcac gcagttgggc ctggtcacgg aaaatttatt ctgagcagtt
     1861 atctttcttt tgaaaaaaca aaattaaatc aggcgatgaa aatcactttt gcctcagcat
     1921 tggtgcaggg cttagtggca atttcattgg tgacggtgat tgtggtgatt tttactctct
     1981 ctcgccaata ttttaattta accctaaaat gggttgagcg ggggagcttt ggtttgatga
     2041 tcttgttcgg catttactgg tgttaccagg tgtatcgaac ggtgaacaga gcgcgaaagc
     2101 ctatcattaa atccattcgt atttcgcaaa aaaaagctgg aaaattaccg cttgtcacgc
     2161 agaaagggca tattcatacc gaaaattgta gctgtaggca taaacattta ccgacttcaa
     2221 atgaaatgca acaagtgaga gattggaaag cacagctgat gttggtatta agtattggct
     2281 caagaccttg ctctggcgct attcttgttt tatttctttc ttatacgctc aatctctatg
     2341 cttggggggt tatttcagca ttagctatgg cagtaggaac agggctgact ttaagcttat
     2401 ttgcttatct tgttatcatt gcgagaaata aggcagttaa ggttagccaa tggtattttt
     2461 cagctcaaat taatcgaaat at
//
LOCUS       DANLVT010000190         2434 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.191, whole genome shotgun sequence.
ACCESSION   DANLVT010000190 DANLVT010000000
VERSION     DANLVT010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2434
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.191"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            193..1788
                     /locus_tag="PXC99_002478"
     CDS             193..1788
                     /locus_tag="PXC99_002478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase/oxidase"
                     /protein_id="HDL5418880.1"
                     /translation="MQRHEQLAQVQQTQKWDFIIIGGGASGLGIAVDAASRGYKTLLL
                     ESHDFAKGTSSRSTKLVHGGVRYLANGDVALVREALRERGRLAKNAAHLFKNQSFIIP
                     NYKFKDCVMYRVGLGLYDMLSGNLSLGKTENISKTEAKRRLPTLNDTGLRTGTVYQDG
                     QFDDSRLAVNMAQTVVEHGGTVLNHAKVTSLHKTPQGKIDGVTFYDELNQQEHTVFGT
                     AVINATGVFMNDILSMDHGSTKKFVVPSQGIHLVLDKSFLPSNDALMIPKTSDGRVLF
                     AVPWHEVLVVGTTDTLIENPSYEPIPLEQEVNFILETAAQYLTKKPTRDDVKAVFAGQ
                     RPLAAPEKEGQSTKEVSRSHKVLTDATSGLITITGGKWTTYRQMAEDTVEEALKVHSE
                     LGNKPCVTVNLPIHGNIPAAQVNLQDHLYVYGSDIPQLRALMTETPEYAQKIHPRLDY
                     TVAEVIWAVRHEMAQTVEDVLARRVRLLFTDARAAIDSAAKVAAIMAKELGKDEMWQQ
                     QQVIQFLDVAKHYLLVDYQPQPI"
     gene            complement(1875..2174)
                     /locus_tag="PXC99_002479"
     CDS             complement(1875..2174)
                     /locus_tag="PXC99_002479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418881.1"
                     /translation="MENIKMEELKLTEKELLVLKGNALRMRFKAETNKTKNEIMQPFK
                     QVKQTGLALVNSPAVKTIALDFLVKRLLSMKGISFSVLGLTAFFLLQQKHKRDDS"
     gene            complement(2161..>2434)
                     /locus_tag="PXC99_002480"
     CDS             complement(2161..>2434)
                     /locus_tag="PXC99_002480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HDL5418882.1"
                     /translation="LIFILLAFVFLLVSFVSLLFGLDNYLLPEQKVKVFFSIAIIMFI
                     AVTICGMMILSALKKQRHFMQSTLTELKLDIAAFKSALTLKQNGEH"
BASE COUNT          817 a          449 c          468 g          700 t
ORIGIN      
        1 aatcaaacat cagtatctct agcgataaaa ctctcttctt atgtacagag aaagaaccat
       61 aaaaagtaca atatagaaat attttgtgac atagatctaa tttttaaaca aatgtctttg
      121 aagtcatttt attttcgttt atgctaatta agtaatgatt aaatgtttta attcgagcaa
      181 aaggagcaaa aaatgcaaag acatgaacag ctagctcaag tacaacaaac gcaaaaatgg
      241 gattttatta ttatcggtgg tggcgcaagt ggtttgggga ttgcggtaga tgcagcttcc
      301 cgtggctata aaaccttatt attagaaagc catgactttg cgaaaggtac atcgagccga
      361 agcacaaaat tagtccacgg tggcgttcgc tatcttgcaa atggcgatgt tgcactcgtg
      421 agagaagcat tgcgtgaacg aggtcgttta gctaaaaatg cagctcattt atttaaaaac
      481 caaagcttta ttattccaaa ctacaaattc aaagactgtg taatgtatcg tgttggttta
      541 ggcttatacg atatgctttc aggcaacctg agtttaggaa agactgaaaa catcagtaaa
      601 actgaagcga aaagacgttt accaacctta aatgatactg gtttacgtac aggcactgtt
      661 tatcaagatg ggcaatttga tgactcacgt cttgcagtga atatggcaca aacggtagta
      721 gagcacggcg gtacagtact aaatcacgcc aaagtgactt cactgcacaa aacgccacaa
      781 ggcaaaattg atggggtgac tttctacgat gaactcaatc aacaagaaca tactgttttc
      841 ggcactgcgg tgattaacgc aaccggcgta tttatgaatg atattttaag tatggatcac
      901 ggtagcacga aaaaatttgt cgtaccaagc caagggattc acttagtatt agataaatca
      961 ttcttaccaa gtaatgatgc gttaatgatt ccaaaaacct ctgacggacg agtgttattt
     1021 gctgtacctt ggcacgaagt gttagtcgta gggacaacag atactctgat tgaaaatcct
     1081 tcttatgagc caattccatt ggaacaagag gtgaacttta ttttagagac agccgcacaa
     1141 tatctgacaa aaaaaccaac tcgtgatgat gtaaaagcag tctttgccgg tcaacgtccg
     1201 cttgcggcac cggaaaaaga aggtcaaagc actaaagaag tatctcgtag tcacaaagtt
     1261 ctcactgatg caaccagcgg tttgattacg attacaggtg gtaaatggac aacttatcgt
     1321 caaatggcag aagataccgt agaagaagcg ttaaaagtcc actctgaact aggcaataaa
     1381 ccttgtgtga ccgtcaactt accgattcac ggtaatattc cggcagcaca agtgaatcta
     1441 caagatcatc tatatgtata tggctcagat attccacagt tacgcgcctt aatgactgag
     1501 accccggaat atgcacaaaa aatccatccg agactagatt ataccgttgc agaagtgatc
     1561 tgggcagttc gccacgaaat ggcacaaacg gttgaggatg tattagctcg ccgtgttcgt
     1621 ttgctcttca ctgatgcgag agcggcgatt gatagtgcag caaaagtggc tgctattatg
     1681 gcgaaagaat taggtaaaga tgaaatgtgg caacaacagc aagttatcca gttccttgat
     1741 gttgcgaagc actatttatt ggtagattat cagccacagc caatctaata cgctaaaagc
     1801 aagcggttaa aatcgataaa aatattgcaa ttacgttatt tgcaactttt taaaccattt
     1861 taaccgcttg tatattagct atcatctctt ttatgtttct gttgtaataa aaagaatgct
     1921 gttaacccca atacagaaaa gctaattcct ttcatactca ataatctttt taccaaaaaa
     1981 tctaatgcaa tggttttaac tgccggtgaa ttgaccagtg caagccctgt ttgtttcact
     2041 tgtttaaaag gctgcataat ctcatttttg gttttattgg tttccgcttt aaatcgcatt
     2101 ctaagtgcat taccttttag aactagaagt tccttttcgg ttaatttaag ctcttccatt
     2161 ttaatgttct ccattctgtt tcaaagttaa agcactctta aatgcggcaa tatctaattt
     2221 tagctcggtt aatgtacttt gcataaaatg gcgttgtttt ttcaaggcag aaagtatcat
     2281 cattccgcaa atagtcacag caataaacat aataatggca atagaaaaga atactttaac
     2341 tttctgttcg ggtaacaaat aattatctaa accaaataat aaactcacaa aagaaactaa
     2401 taaaaataca aaagccaata agataaatat aagt
//
LOCUS       DANLVT010000191         2428 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.192, whole genome shotgun sequence.
ACCESSION   DANLVT010000191 DANLVT010000000
VERSION     DANLVT010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2428)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2428)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2428
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.192"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(116..191)
                     /locus_tag="PXC99_002481"
     tRNA            complement(116..191)
                     /locus_tag="PXC99_002481"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(156..158),aa:Thr,seq:ggt)
     gene            complement(195..269)
                     /locus_tag="PXC99_002482"
     tRNA            complement(195..269)
                     /locus_tag="PXC99_002482"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(234..236),aa:Gly,seq:tcc)
     gene            complement(313..397)
                     /locus_tag="PXC99_002483"
     tRNA            complement(313..397)
                     /locus_tag="PXC99_002483"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(361..363),aa:Tyr,seq:gta)
     gene            complement(432..507)
                     /locus_tag="PXC99_002484"
     tRNA            complement(432..507)
                     /locus_tag="PXC99_002484"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(472..474),aa:Thr,seq:tgt)
     gene            754..1704
                     /gene="coaA"
                     /locus_tag="PXC99_002485"
     CDS             754..1704
                     /gene="coaA"
                     /locus_tag="PXC99_002485"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pantothenate kinase"
                     /protein_id="HDL5418883.1"
                     /translation="MSLEKTSKITPFLTFDRQQWADLRKSVPLKLTEQDLKPLLGFNE
                     DLSLEEVRTIYLPLARLIQYYIEENLKRQTVLHRFLGIEPPKVPYIISIAGSVSVGKS
                     TSARILQALLSHYPKERKVDLITTDGFLYPLATLTEKNLLKKKGFPESYDIHSLIRFV
                     SDIKSGKRNVKAPIYSHLTYDIIPNQFNTVDQPDIVILEGLNVLQSGMNYPSSPHNVF
                     VSDFVDFSIYVDAEESLLKKWYINRFLKFRRSAFADPNSYFHHYASLSEQEAIETAST
                     IWEEINGLNLRQNILPSRERANLILIKGQDHAIETVKLRK"
     gene            1857..2396
                     /locus_tag="PXC99_002486"
     CDS             1857..2396
                     /locus_tag="PXC99_002486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbE family thiol:disulfide interchange protein"
                     /protein_id="HDL5418884.1"
                     /translation="MNKKFLLPLILFLALSVAFLVQLARNSQGDDPKKLESALIGKTV
                     PSFNLESVLDEKQTIDQNIVKTGKPRLLNVWATWCPTCYAEHEYLTILAKQGVEIVGI
                     DYKDERPKAIKFLANYGNPYKAIIFDPKGSLGLDLGVYGAPETFIIDGNGVIQYRHAG
                     DVNDQVWNQVLKPIYDGLK"
BASE COUNT          757 a          509 c          465 g          697 t
ORIGIN      
        1 tttctaaaag cctcttaaac aaaaacggtt acaatggaac aaaagaaccc attaaccata
       61 atgtagaaat taataccaat aaaaatttgc gtgagaaaga tagaattcag agaagtggtg
      121 ctgataggcg gatttgaacc gccgacctca cccttaccaa gggtgcgctc taccaactga
      181 gctatatcag cgcttggagc gggcagcggg aatcgaaccc gcatcattag cttggaaggc
      241 taaggtaata gccattatac gatgcccgct gttctaaatt cgtctgacct acgcgattca
      301 aaatatcaga gatggtggag ggagaaggat tcgaaccttc gaaggctgag ccaacagatt
      361 tacagtctgc cccctttggc cgctcgggaa cccctccacg ataattgaat acttatttac
      421 gcctgagtta atggtgccga ctaccggaat cgaactggtg acctactgat tacaagtcag
      481 ttgctctacc tactgagcta agtcggcgtt gctgtgtcgt aagcaagtga tgtgcattat
      541 agggaaattt taacagcgtg caagtgtttt ttaaaaaaat attaaaaaaa gcgttctttc
      601 gatttttaaa tatacaaaat gactattttt tgtaaaatac aacggatttt ctctgcataa
      661 ctacggcaaa ataagtgcat atattgtata gttacgccct taatttggta tttaattacc
      721 ttaatattcc agcaaaaaat tgagattttg gctatgagcc ttgaaaaaac cagcaaaatt
      781 actccttttc tcacttttga tcgccaacaa tgggctgatt tacgcaaatc cgttccattg
      841 aagctgaccg agcaagacct aaaaccgctt ttaggcttta atgaagatct ttcattagaa
      901 gaagtacgca ctatttattt accgcttgcc cgtttaattc aatactatat agaagaaaac
      961 ttaaaacgcc agacagtctt acatcgcttt ctcggcattg aaccgccaaa agtcccttac
     1021 attattagta ttgccggcag cgtatcggtt gggaaaagta cctctgcccg tattctgcaa
     1081 gctctgctct cccattaccc taaagagcga aaagtggatt taattaccac cgacggtttt
     1141 ttatatccac ttgcaacgct aaccgaaaag aacttactca agaaaaaagg ctttccggaa
     1201 tcttatgata ttcacagcct gattcgcttt gtatctgata ttaaatccgg caaacgcaat
     1261 gtgaaagctc cgatttattc acatttgacc tacgatatta tcccaaatca atttaatacg
     1321 gtggatcaac ccgatattgt gattttagaa gggctaaacg tgttacaaag tggaatgaac
     1381 tacccgtcca gcccacataa tgtatttgta tcggactttg tggatttttc tatttatgtg
     1441 gatgccgaag aaagtttgct gaaaaaatgg tatatcaacc gtttcttgaa attccgccgc
     1501 agtgcctttg ccgacccaaa ctcctatttc caccattatg cgagtttgtc cgagcaagaa
     1561 gcgattgaaa ccgcctcaac gatttgggaa gagatcaacg gcttaaattt acgccaaaat
     1621 attctcccaa gccgagagcg tgccaacctc attttaatca aagggcaaga ccacgccatt
     1681 gaaacggtaa aattacgcaa ataatatttt gcaaataatt gggctttttc gaccgcttgt
     1741 aataccttaa aatccgttga ataccactca acggattttt tatttaaatc aatgcttatt
     1801 caactatttt ttggtaagct aacgactttg agagtgattg atattaggca tatacaatga
     1861 acaaaaaatt tctacttcct ttaattctct ttttggcgtt atctgtggca tttttggttc
     1921 aactcgctcg caactcgcaa ggcgatgatc cgaaaaaatt agaatcagcc ttaattggca
     1981 aaacagttcc gagctttaat ttagaatcgg tattagatga aaaacagaca atcgaccaaa
     2041 atatcgtcaa aaccggcaaa cctcgcctgc ttaacgtgtg ggcaacttgg tgtccgactt
     2101 gttatgccga acacgaatac ttaaccattt tggcaaaaca aggggtggaa attgtcggta
     2161 ttgattataa agacgaacgc ccaaaagcga ttaaattctt agccaattac ggcaaccctt
     2221 ataaagcgat tatttttgac ccgaaaggct cactcggttt agatttaggt gtttatggtg
     2281 cacccgaaac ctttattatt gacggcaacg gcgtgattca ataccgccac gccggcgatg
     2341 taaacgacca agtgtggaac caagtgctta aaccgattta tgatggatta aagtaaatgt
     2401 ttgtatttcc tgctgacatt aagaaatc
//
LOCUS       DANLVT010000192         2402 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.193, whole genome shotgun sequence.
ACCESSION   DANLVT010000192 DANLVT010000000
VERSION     DANLVT010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2402)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2402)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2402
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.193"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(32..457)
                     /locus_tag="PXC99_002487"
     CDS             complement(32..457)
                     /locus_tag="PXC99_002487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HDL5418885.1"
                     /translation="MYKHILVAVDLSEESLVLVRKGAALAEKCGAKLSLIHVDVNFSD
                     LYTGLIDINMSSVQYSVVEETNTALAELASKVNYPVSECLNGTGDFSQVLEEAVEKHN
                     VDLLITGHHQDFWSKFMSSTRRVMNNITVDMLVVPLADE"
     gene            688..1461
                     /locus_tag="PXC99_002488"
     CDS             688..1461
                     /locus_tag="PXC99_002488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FNR family transcription factor"
                     /protein_id="HDL5418886.1"
                     /translation="MKIVSEPKTSGRHTCTIHCQNCSISQLCLPFTLNETELTQLDNI
                     IERKKPIQKSQVIFKLGDELRSLYAIRSGTLKAYTLSESGEEQITGFHLPGDLIGFDA
                     ITNMQHEGYAQALETSMICEIPFDILDDLAGKMPKIRHQIMRLMSNEIKSDQEMILLL
                     SKMNAEEKLAAFLYNLSQRYSARGFSAKEFRLTMTRGDIGNYLGLTIETISRLLGRFQ
                     KSGMISVQGKYIIINRMEELAELAGAIKPQQNIIAQTTA"
     gene            1605..2396
                     /locus_tag="PXC99_002489"
     CDS             1605..2396
                     /locus_tag="PXC99_002489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL5418887.1"
                     /translation="MGILTGKRILVTGLASNRSIAYGIANAMKQQGAELAFTYLNDKL
                     KPRVEEFAKEFGSDIVLPLDVATDESITECFTELSKHWEKFDGFVHAIAFAPGDQLDG
                     DYVNAATREGYRIAHDISAYSFVAMAQAARPFLNENAALLTLSYLGAERAIPNYNVMC
                     LAKASLEAATRVMAADLGKEGIRVNAISAGPIRTLAASGIKNFKKMLSAFEKTAALRR
                     TVTIDDVGNSAAFLCSDLASGVTGEVLHVDAGFSVMAMGELGDEE"
BASE COUNT          743 a          478 c          437 g          744 t
ORIGIN      
        1 ctcaagcggt tatttttcat tcactttctt gctattcatc tgctaatggc acaaccagca
       61 tatcaacagt gatattattc atgactcgac gagttgaaga cataaattta ctccagaagt
      121 cctgatgatg gccagtgatg agtaaatcga cattgtgttt ttctacggcc tcttccaaaa
      181 cttgactaaa atctcccgtt ccgtttaaac attcagatac aggataattt acttttgagg
      241 caagttcagc cagtgccgta tttgtttctt caacaacact gtattgtacc gaagacatat
      301 taatatcaat taatcctgta tagagatccg aaaaattaac atcaacgtga atgagggaaa
      361 gtttagctcc gcatttttct gctaacgcag cccccttacg cactaaaaca agactttctt
      421 cagaaagatc cactgcaact aagatatgtt tatacataat atgctccttg cttgtgagag
      481 ttgtttactt tgtgtataaa catactaaca cactcttttt gataaaaact tgaagtagat
      541 ctcaaaaata aaaatttgat tatatttttc atacctcttt gtaagtattt ttatttttcc
      601 ttggtatact ttgcttcatg taaatttaat ggtaaacttt gttctaaatc aaatttagga
      661 atacttttct aatttaaggt tgaatggatg aaaattgtat cagaacctaa aacaagcgga
      721 cgtcatactt gcacaattca ttgtcaaaat tgcagtatta gccaactatg cttacctttt
      781 actcttaatg aaacggaatt aactcaacta gataatatta ttgagcgtaa aaaaccgatt
      841 caaaaatcgc aagttatttt taagttaggt gatgaactgc gttcgcttta tgctatccgt
      901 tctggaacat taaaagccta taccttaagt gaaagtggtg aagagcaaat taccggtttc
      961 catttacctg gcgatctaat tggctttgat gcaattacca atatgcagca cgaaggctat
     1021 gctcaagcac tcgaaacctc aatgatttgt gagattccat tcgatatttt agatgatctt
     1081 gccggcaaaa tgccaaaaat tcgccatcaa attatgcgtt tgatgagtaa tgaaattaaa
     1141 agcgatcaag aaatgattct attgctctca aaaatgaatg cggaagaaaa actagctgca
     1201 tttttgtata atctttccca acgttactca gcccgtggtt tctctgcaaa agagttccgt
     1261 ctaactatga cccgtggaga tatcggcaat tatcttggtt taaccattga aactatcagc
     1321 cgtttattag ggcgtttcca aaaaagcggt atgatttcag tacaaggaaa atatattatt
     1381 attaaccgta tggaagaatt agccgaatta gccggggcaa tcaaaccgca gcaaaatatt
     1441 attgctcaaa ctaccgctta atttatctta ccaaatccct ttttgaaacc tcgttcaaaa
     1501 agggatttct gatccgatga gccgctaact ccatttgccc gtttttccta tatccgttat
     1561 aatcgacaca attttgcccc aatcaatata aaagaggaat ttttatgggt atcttaactg
     1621 gtaaacgtat tttagtgaca ggtttagcaa gcaaccgttc gatcgcttac ggtattgcaa
     1681 acgcaatgaa gcaacaaggt gcagaacttg cattcaccta cttaaacgat aaattaaaac
     1741 cacgagttga agaatttgcc aaagaatttg gctcagacat tgtccttccg ttagatgtag
     1801 caaccgatga aagcattact gagtgcttta ctgaattaag caaacattgg gaaaaatttg
     1861 acggttttgt tcacgctatc gcatttgcac cgggcgatca attagacggc gattatgtaa
     1921 atgccgcaac ccgtgaaggt tatcgtattg cacacgacat cagtgcctat agctttgttg
     1981 caatggctca agctgctcgc cccttcttaa atgaaaatgc cgccctttta accttaagtt
     2041 acttaggtgc agagcgtgca atccccaact acaatgtaat gtgcttagcc aaagcctctt
     2101 tagaagctgc aacccgtgta atggcagccg atttaggtaa agaaggtatt cgtgtaaatg
     2161 cgatttcagc cggcccgatc cgtacattag ctgcttcagg cattaaaaac ttcaagaaaa
     2221 tgctttctgc tttcgagaaa accgctgctt tacgccgcac cgtaactatt gatgatgtag
     2281 gtaactctgc agctttctta tgctcagatt tagcctctgg tgtaacaggt gaagtgttac
     2341 acgttgatgc cggcttcagc gtaatggcaa tgggtgaatt aggcgacgaa gagtaattcc
     2401 ta
//
LOCUS       DANLVT010000193         2349 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.194, whole genome shotgun sequence.
ACCESSION   DANLVT010000193 DANLVT010000000
VERSION     DANLVT010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2349)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2349)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2349
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.194"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..191
                     /locus_tag="PXC99_002490"
     CDS             <1..191
                     /locus_tag="PXC99_002490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2523 domain-containing protein"
                     /protein_id="HDL5418888.1"
                     /translation="ELLPVVIEMLVSRKLIPDLNALFGQLPESMWYFLNIFQIPMAIS
                     LMISAMISRFVRRMPFIG"
     gene            201..740
                     /locus_tag="PXC99_002491"
     CDS             201..740
                     /locus_tag="PXC99_002491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005566788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418889.1"
                     /translation="MAVSAYIGIPGSGKSYEVVKSVILPAVASNRRVVSNIYGLNKEK
                     IHQYLLRKNKKLMIEELGEVIYVTNEQCLESDFLPSMDEQDSFCKAGDLIIIDEVWRI
                     WGNDKDIPKNHRSFIAEHRHFADPITGVTCDLVVINQDISQIPRFIKEGLRQLTECKN
                     TLVWGCVIVIGLMFFKERI"
     gene            671..1234
                     /locus_tag="PXC99_002492"
     CDS             671..1234
                     /locus_tag="PXC99_002492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418890.1"
                     /translation="MQKHVGLGLRNRYRVDVFQGKNLAKKNRTNSYQEKYDKKIFELY
                     KSYESDGAREAVTDSRQSIFSSFWVKVWIILLPLALFYCGYNLYIFLNGSESEVSHNT
                     EQAKFASDENHNDIVIHLLPTIGKPLSTKWRITGELKRDNKSFVILADNENRLRLEPS
                     SQFSFSGRMLQGEIDGGIVSYFSGESK"
     gene            1231..>2349
                     /locus_tag="PXC99_002493"
     CDS             1231..>2349
                     /locus_tag="PXC99_002493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspD"
                     /protein_id="HDL5418891.1"
                     /translation="MKIHQLGLLLMISSFSYAKNVDFKLEAVPLPKAISIIYDEVLQK
                     PYMLDPKLSNDSRVISFHTTEQQNFEQFIQRYFSNMNISVSEKKGVVYIGHIEPKQPK
                     VIKRSFVYSPIHRDVDYLASFLKDGTEGNQVFASGDKLVYYGTSEDIARVKSILKSID
                     TKSREVVVTGYVFEVQNIEKEGSGINLLAKLLSGKLGISVGYKQSYENFITVNAGSLD
                     AMFELFRTDQRFRVVSSPTLRVKSGSRGNFSVGSDVPVLSNVTYQDGRPIQSIEYRSS
                     GVIFDIQPTIKDKAIDLKIQQLSNFIKTDTGVNNSPTLVKRDLVTDVTVKSGDVIVLG
                     GLAENKISNGETSFSLLPKGWLSGKSNENTKTDIIVLLQ"
BASE COUNT          793 a          324 c          483 g          749 t
ORIGIN      
        1 ctgaactact tcctgtagta atagagatgc ttgtgtctag aaaattgata cctgatttaa
       61 atgcgttatt tgggcaattg cctgaaagta tgtggtattt tttaaatatt tttcagatac
      121 caatggctat ttctttaatg atttcagcaa tgatttcacg ttttgttaga cgtatgccat
      181 ttattggata gaggagtgct atggctgttt cagcgtatat agggattcct ggaagcggca
      241 aatcgtatga agtggttaag tcagtaattt tacctgctgt tgcttcgaat cgaagagttg
      301 tttccaacat ttatggatta aataaagaga aaattcatca atatttactg cgtaaaaata
      361 aaaaattaat gattgaagag cttggtgaag tcatatatgt aacgaatgaa caatgcttgg
      421 aatcggattt tttaccatca atggacgaac aagattcatt ttgcaaagct ggggacttga
      481 taattattga tgaagtttgg cgtatttggg gaaacgacaa ggatattcca aaaaatcatc
      541 gttcatttat tgctgaacat cgacattttg cagatcctat aacaggtgta acttgtgatt
      601 tagtcgtaat aaatcaagat atttctcaaa ttccaagatt tattaaagaa ggattgagac
      661 aacttaccga atgcaaaaac acgttggttt ggggttgcgt aatcgttatc gggttgatgt
      721 ttttcaagga aagaatttag ctaaaaagaa ccggacaaat tcttatcaag aaaaatatga
      781 taaaaaaata tttgagcttt ataaatctta tgaatctgat ggtgcaagag aagcggttac
      841 agatagtagg caatctatat tttcatcttt ttgggtcaag gtatggatta ttcttttacc
      901 attggcatta ttttattgtg gctataacct ttacattttc ctaaatggtt cagagagtga
      961 agtaagccat aatactgaac aggctaaatt tgcttctgat gaaaaccata acgatatagt
     1021 aattcattta cttcctacta ttggaaaacc tttatcaact aaatggcgaa taacagggga
     1081 actaaaaagg gataataaat catttgtgat cttagctgac aatgaaaacc gtttaagact
     1141 tgagcctagt agccagttta gttttagcgg tcgaatgttg caaggagaga tagatggtgg
     1201 aatagttagt tatttttcgg gagaatctaa atgaaaatcc atcaattagg gctattgctc
     1261 atgattagct cattttctta tgctaagaat gttgatttta aattagaagc tgtgccgtta
     1321 ccgaaagcaa tatcaataat atacgatgaa gtgctacaaa agccatatat gcttgatcct
     1381 aaattatcta atgattcaag ggttattagc tttcatacaa cagagcaaca gaattttgag
     1441 cagtttattc aacggtattt cagcaatatg aatatcagtg tatcagagaa aaaaggtgtt
     1501 gtttatattg gacatattga accaaaacag ccgaaagtaa taaaacgtag ttttgtgtat
     1561 tcgcctattc atcgtgatgt tgattatttg gctagcttcc tgaaagatgg aacagaagga
     1621 aaccaagttt ttgcaagtgg cgacaagctt gtatattatg gtacttctga agatattgca
     1681 cgagtgaaaa gtatcttgaa atcaatcgac acaaaaagcc gtgaagtagt ggtaactggt
     1741 tatgtttttg aagtgcagaa tattgaaaaa gagggtagtg gcataaactt gttagcgaaa
     1801 ttgctatcag gaaaattagg cattagtgtt ggttacaagc aaagttatga aaactttatc
     1861 accgtgaatg caggaagttt agatgcaatg tttgaattgt ttcgcacaga tcagcgtttt
     1921 agggttgtca gcagtccgac attaagagta aaatcaggct caagaggtaa tttttcagta
     1981 ggctctgatg tccctgtatt atcgaatgta acctatcagg acggaaggcc tattcagtcg
     2041 attgaatacc gttcaagcgg tgtaatattt gatattcagc caacgataaa agataaagcg
     2101 attgatttaa aaattcaaca actatcaaat ttcatcaaaa cagataccgg tgtaaataat
     2161 agcccaacgt tggtaaagcg tgatctggta acagatgtta cggttaaaag cggtgatgtt
     2221 atcgttttag gtgggttagc tgaaaataaa atatctaatg gcgaaaccag tttttcattg
     2281 ctacctaaag gttggttaag tggaaaatca aatgaaaata ctaaaacaga tattatagtt
     2341 ctgctacaa
//
LOCUS       DANLVT010000194         2287 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.195, whole genome shotgun sequence.
ACCESSION   DANLVT010000194 DANLVT010000000
VERSION     DANLVT010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2287
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.195"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..319
                     /locus_tag="PXC99_002494"
     CDS             <1..319
                     /locus_tag="PXC99_002494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glucose-1-phosphatase/inositol phosphatase"
                     /protein_id="HDL5418892.1"
                     /translation="DSNIIALLSALNVKPYKLAHQYEQTPIGGKVFIEIWKEKSSQAQ
                     KVKLEYVYQSTDQIRKAIPLSLDKPPQHHILSLDYCQADQYGLCDYMEFKQLLEKVIA
                     DTL"
     gene            627..>2287
                     /locus_tag="PXC99_002495"
     CDS             627..>2287
                     /locus_tag="PXC99_002495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="HDL5418893.1"
                     /translation="MSQDIQADLKKILALLSRNRRFQSLFLLLLRSEQFINSDALSTE
                     LQLSVRTVKKEIKLLKEKLEPYGIQIFSRPFYGYKLLIQFEELHTQLKQYFQISQPMT
                     VNNKFESRVNAILRRLLVSQRALKVEDFQSELYLSFTSALTKEFSQVKALLGKYGLIL
                     EAKPYHGMNIVGESYRKIMLTVRLYKYFTQLEHPFGIKEFEQCFACPMTEKIRERLAK
                     TIIHFNLVFSDIYAERFIIYLRYFYNQQPELLLPKLNFNYQQTNEYQFVIKLLEQLRE
                     QDSRFEFNPEVIRFLTYIAIASTDLYRFKDCNSDNYPLLLDKAWEIHRFIFTQFSAYL
                     NLSEIHDDTCRKDLLKMLIPIAMKMMLSISDDVDLGLFNQTELHRNPILAHTVEKLVD
                     DIEKNYGYSLSIREQYFIFDIFSGMVNRIELERKPLRLAIIALNGRLSTQQLKRNIKR
                     YFSDYILKIETKVLYELAIMEDKPYDYYLCNEYGKNMAIPYKPIYFADSSLNENEYAT
                     SLNEVFYHAYQYDEVLPSIKSIEIEAQYRLNEFHLEQEYLNYEQI"
BASE COUNT          782 a          372 c          395 g          738 t
ORIGIN      
        1 cgattccaat attatagcct tactttctgc attaaatgtt aagccttata aattagcaca
       61 tcaatatgaa caaactccaa taggagggaa agtctttatt gaaatctgga aagaaaaaag
      121 tagccaagca caaaaagtta aactggaata tgtatatcaa tctactgacc aaattcgtaa
      181 agcgattcca ctaagccttg ataaaccacc gcaacatcac attttgagtt tggattattg
      241 ccaagctgac caatatggat tatgcgatta tatggaattt aaacagttac tggaaaaagt
      301 cattgctgat acattgtgag attttgacaa agtgagtgaa aaaggtagca taaaaaagtc
      361 gggacagttg ccagctgctc cctgtaagat gttgtttaca gcactagtaa tgctactatc
      421 cccaaaaagc tgctgaaagg cagctttttt gttgtatata aaagtacacc tttctacgct
      481 tcattctttt tctccaatta aacctaattt aggacttcta gtgataaatt cggtatcata
      541 tcttaattca ctacatatcg tgcaagcctt aaaattgaaa gggctgacga aatcctattt
      601 aattctgaca cacataaggg aatattatgt cgcaagatat tcaagccgat ttaaaaaaga
      661 tattggcact attaagccgt aaccgtcgat ttcaatcatt atttttatta ctgttaagaa
      721 gtgaacaatt tattaatagt gatgcacttt ctacggagtt acagctttca gtacgaacgg
      781 taaaaaaaga gattaagtta ttaaaagaaa aacttgaacc ttacggcatt cagatttttt
      841 ctcgaccgtt ttatggctat aaattattga ttcagtttga agaattacac acgcaactaa
      901 aacagtattt ccaaatatca cagccgatga cggtaaataa taaatttgag tctcgggtaa
      961 atgcgatttt acgccgatta ctggtgagcc agcgtgcatt gaaagttgaa gattttcaga
     1021 gtgagcttta tttaagtttt accagtgcct taacaaaaga atttagtcaa gttaaagcct
     1081 tgttaggaaa atatggattg atactcgaag cgaaacccta tcacggaatg aacattgtag
     1141 gtgaaagtta tcgtaaaata atgctcacag tacgattata taaatatttt acccagcttg
     1201 aacatccatt tggaattaaa gaatttgaac agtgttttgc ttgtcctatg actgaaaaaa
     1261 tccgtgaaag gttagctaag acaattattc atttcaattt agtattttct gatatttatg
     1321 ctgagcggtt tattatttac ttacgctatt tttataatca acagcctgag ttattgttac
     1381 cgaagttaaa ttttaattat caacagacga atgaatatca gtttgtaatt aagttactgg
     1441 aacagcttcg tgaacaagac agtcgttttg agtttaatcc ggaagttatt cgatttctga
     1501 cctatattgc gatagccagt acagatctct accgctttaa agattgtaat tcggataatt
     1561 acccattgtt gctagataag gcttgggaaa ttcatcgttt tatttttact cagttttctg
     1621 catatttaaa tttatcggaa attcacgatg acacttgccg taaagatttg cttaaaatgc
     1681 tgatccctat cgcaatgaaa atgatgctta gcatttcaga tgatgtggat ttagggctat
     1741 ttaaccaaac agaactacat agaaatccaa ttttggctca tacagtagaa aaattagtgg
     1801 atgacattga aaaaaactac gggtatagcc tatctattcg agaacagtat tttatttttg
     1861 atattttttc cggaatggtt aatcgaattg aattagaacg taaaccgctc cgactggcga
     1921 ttattgccct taatggcaga ttaagcaccc aacagttaaa acggaatatt aagcggtact
     1981 tttccgacta tattttgaaa attgaaacca aagtgctata tgagcttgcc ataatggaag
     2041 ataaacctta tgactactat ctctgtaatg aatatggaaa aaatatggct attccctata
     2101 agcctattta ttttgctgac agtagtttaa atgaaaatga atatgcaaca tcactcaacg
     2161 aagtatttta tcacgcttat caatatgatg aggtgttgcc tagcattaaa tcgattgaaa
     2221 ttgaagcaca atatcgccta aatgagtttc atcttgagca agaatatctt aattacgaac
     2281 agattat
//
LOCUS       DANLVT010000195         2219 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.196, whole genome shotgun sequence.
ACCESSION   DANLVT010000195 DANLVT010000000
VERSION     DANLVT010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2219)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2219)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2219
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.196"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..609
                     /locus_tag="PXC99_002496"
     CDS             <1..609
                     /locus_tag="PXC99_002496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HDL5418894.1"
                     /translation="AEEAKKIAEAKGIGNKEYKDGLNELEEKNETGKNGEEIRTHGYL
                     YNSHYSVVTAKMKQTLQENGRQMEPTVEVKGLKTENLPTEGKATYKGEAFDSHGNNSN
                     SVVGGELIYNVDFSSRTGSGLVKNVQGGSIELAQGEIKNDSIIASAHQKYNDQAVGNG
                     SYNIQFFGPNAEEIGGKIELNGEGEGSMKQMLGIAGTREEQK"
     gene            658..2052
                     /locus_tag="PXC99_002497"
     CDS             658..2052
                     /locus_tag="PXC99_002497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5418895.1"
                     /translation="MYKKHFLFLLVSPLVMAETVEFQQDPKEFDGQRQAVKFEQEIAK
                     KDLKLTAYLEEDNSLKGIEQHINQAILRQDWAKLERLLGDYAKQEQFDPLLLDYALAA
                     LAYAKKDYRSAAFYYQQLLKKQPDLTYPRFDLALILKEDYRYREAEQEFKQLKTDDLR
                     NAVNSALAQIEEEESWKPDFYLQYTQTNNVNNASSSPTVNVNGRIFIKESDSLPQSAK
                     GVRYGVGLSKMRNIGGNHFVGVDLGYNGVYYWNNHDYSEQSVSLTPKYSYRTATYRIG
                     VSPFIEQNWLGSSRYNYQFGSSINAVKLFERGLISGSFSHLQKRYSEQHIADRYNGYR
                     NQLTLGTQWQAVKNWRFFANLNASREITREKAQSSNKWLATIGVIYQTPSWASSVSVG
                     YGKRYFADKHYLFGYKRQDKEYQANVAVWNRSWHWQGIVPKLNFRYQKIDSNIADFYS
                     RSNKEVFMTLEKLF"
BASE COUNT          743 a          378 c          498 g          600 t
ORIGIN      
        1 gctgaagaag caaaaaaaat tgcagaggca aaaggaattg gcaataaaga atataaagat
       61 ggattaaatg agttagaaga aaaaaatgaa acaggtaaaa acggagaaga gattcgaacc
      121 catggttatc tctataacag ccattattcc gttgtaactg ccaaaatgaa acaaacttta
      181 caggaaaatg gtcgtcaaat ggaacctacg gttgaagtga aagggcttaa aactgagaat
      241 ttaccgacag agggcaaagc aacatataaa ggagaagcct ttgattctca cggtaataac
      301 agcaattcag tagtaggtgg agaattaatc tataatgttg atttctctag tcgtaccgga
      361 tcaggtctag ttaaaaatgt acagggcggt tctatcgagt tagcacaagg cgaaataaaa
      421 aatgatagta ttatagcttc tgctcaccaa aagtataatg atcaggctgt tggaaatggt
      481 agttacaata tccaattctt tggtccaaat gcagaagaaa ttggagggaa aattgagctt
      541 aatggtgagg gcgaaggctc aatgaagcag atgttaggta ttgcaggaac ccgagaagaa
      601 caaaaataac atttaatacc caatgccgtt taatcttaaa cggcattctt ttttactatg
      661 tataaaaaac attttctatt tttacttgtt tcgcctttag taatggcgga aacggttgag
      721 tttcagcaag atcccaaaga gtttgatggg cagcgacaag cggttaaatt tgagcaagaa
      781 attgcaaaaa aggatttaaa attaaccgct tacttggagg aagataattc tcttaaaggt
      841 attgaacagc acattaacca agcgattctt agacaagatt gggcgaagct ggaaaggctg
      901 cttggcgatt atgcaaagca agagcaattt gatccgctac ttttagacta tgctttggcg
      961 gcattggctt atgctaaaaa agattatcgc tctgcggcgt tttattatca gcagttgctg
     1021 aaaaaacagc ctgatttaac ctaccctcgt tttgatttgg ctctgatttt aaaagaggat
     1081 tatcgctaca gggaagcaga gcaagaattt aagcaactca aaaccgatga tttacgcaat
     1141 gcggtgaaca gtgcgttggc tcaaatagag gaggaagaga gctggaagcc ggatttttat
     1201 ttgcaatata ctcaaaccaa caatgtgaat aatgcttctt cgtcgccaac ggtaaatgta
     1261 aacgggcgga tttttattaa agaatcagac agcttgccgc agtcggcaaa aggcgtaaga
     1321 tatggcgttg gcttgagtaa aatgcgaaat atcggcggta atcattttgt gggagtcgat
     1381 cttggctata acggcgttta ttactggaat aaccacgatt atagcgaaca gtcggtctca
     1441 ctaacaccaa aatatagcta cagaacggca acttatcgta tcggggtttc gccctttatt
     1501 gagcagaatt ggctgggtag ctcacggtat aactatcaat ttggtagcag tatcaatgct
     1561 gttaaacttt ttgaacgagg gctgatttcc ggctcattca gccatctgca aaaacgttat
     1621 agtgaacagc atattgccga ccgttacaat ggttatcgca accaactcac gctaggtacg
     1681 caatggcaag cggtcaaaaa ttggcgattt tttgcaaatc ttaacgctag ccgtgaaatt
     1741 acccgtgaga aagctcaatc ttccaataag tggctggcga ccattggcgt aatttaccaa
     1801 accccaagct gggcaagttc ggtaagtgtc ggatatggca agcgttattt tgctgataaa
     1861 cattatctgt ttggctataa acgccaagat aaggaatatc aagcgaatgt ggcggtgtgg
     1921 aatcgaagtt ggcactggca agggattgtg ccgaaattga atttccgtta tcaaaaaatc
     1981 gatagcaata ttgccgattt ctactctcgt agcaataaag aagtctttat gaccttagag
     2041 aaactatttt aaggctgtgt atgaatgtcg gggagaaaaa ttttctcccc gatatttatg
     2101 tgtagaagat cagacttgat ctgacaattc actctaaaaa gtgagagttt cccgtttaga
     2161 atatgagtgt caaaaatcaa tctaaacaaa aaggaaactc tcatgtttta ttctaacaa
//
LOCUS       DANLVT010000196         2201 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.197, whole genome shotgun sequence.
ACCESSION   DANLVT010000196 DANLVT010000000
VERSION     DANLVT010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2201)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2201)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2201
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.197"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            19..2178
                     /locus_tag="PXC99_002498"
     CDS             19..2178
                     /locus_tag="PXC99_002498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
                     /protein_id="HDL5418896.1"
                     /translation="MQIKQTVLAIAITPFISQLSLAQETKISSIELDTIEVNEQQENL
                     LKQQAVMSNEDLVRYSTDMGVPQTGRFGPQGFNIRGVEGNQVAVTVDGISQAASNNYA
                     TFSRYSYYNKSRPEIDTELMSDVTIEKGSSTKVGNGALGGSVNYKTKTVSDILMKGRQ
                     FGGMLKYTYNGQNKENIETAGIAADGQYADALVMYSHRQGHETQTTSKGPDIMGSGRG
                     LPNPYKNNQYSYLAKLGLKWNDENRLELKTSKQRSKNAGQELSYSTVTLRDFLDVQEI
                     ETYGVTYLYTPKNSILENIKVAVTKQDTEISGINDQITIARGTKTDNTKRAFNTKNVE
                     GSLGVTFKPVDLGNTEHKLSTELGYGVSDFSFDMQTYTAGITPTDQNMQSPAKTKSFH
                     ILMGDSILLTQNLSAHLNARYEQSKLHSDDNSLSDKTFNNWAGDIGLNYQLSPVWQIG
                     YKLSRGFRTPTASEMFFNREVQGRGASQTFLANTNLKPETSLGNEISLVGNGSLGSLS
                     VAAYHTHYRNLIDLATIGNNIYQSQNVNRAKIKGVDINGTLDLNTAWNAIPQGFELNG
                     GFGYARGKRNDGTDLLTVQPLKALFGIGYRAVNNDWAIHLNGTYTQGKKAKYAQQYAI
                     LANTGYLSYDKSLTTYPYLSNSATVFDLVAHKKFGERAIVKVGVYNLFNKKYWTWDSL
                     RTIGITSPGVANSITGEGLNRYLAPERYVMASVEFKF"
BASE COUNT          750 a          391 c          446 g          614 t
ORIGIN      
        1 aactagagga tctaaaatat gcaaataaag caaactgtat tagcaatagc gattactccc
       61 tttatttctc aactctcctt agctcaagaa acaaagatta gtagcattga actagatact
      121 attgaagtaa atgagcagca ggagaaccta cttaaacagc aagcggtgat gagcaatgaa
      181 gatttagtac gttatagtac tgatatgggc gttccgcaaa caggccgctt tggcccacaa
      241 gggtttaata tccgtggtgt tgaaggtaat caagtggcag taacagttga tggcatatcg
      301 caagcagcat caaataacta tgccaccttt agtcgctata gttactacaa taaatctcgc
      361 cctgaaatcg atactgaatt aatgagcgat gtaaccattg aaaaaggctc aagcacaaaa
      421 gtaggcaatg gggcattagg cggctctgtg aactataaaa ctaaaaccgt aagtgatatt
      481 ttaatgaaag gtcgccaatt tggtgggatg ttgaaatata cctataacgg tcaaaataaa
      541 gagaatattg agacggcagg tattgctgcg gatggtcaat atgcggatgc tttggttatg
      601 tatagccacc gtcaaggaca cgaaacacaa acaacgtcta aaggtccgga tattatggga
      661 agtggtcgtg gtttaccaaa tccttacaaa aataatcaat acagctactt ggcaaaatta
      721 gggctaaaat ggaatgatga aaatcgcctt gaattaaaaa cttctaagca acgcagtaaa
      781 aacgccggtc aagagctttc ttattctacc gtcacattac gtgatttttt ggatgtgcag
      841 gaaattgaaa cttatggcgt tacttattta tacactccaa aaaacagtat tcttgaaaat
      901 attaaagttg cggtaaccaa acaggatact gaaatttcag gtattaacga tcaaatcact
      961 attgcccgtg gtacaaaaac agataatacc aaacgggctt ttaatactaa aaatgttgaa
     1021 ggtagcttag gtgttacatt caagcctgtt gatctaggta ataccgaaca taaattgtca
     1081 acggaattag gctatggtgt atctgatttc agttttgata tgcaaaccta tacagcaggt
     1141 attacgccaa ccgatcaaaa tatgcagtct ccggcaaaaa ccaagtcttt ccatattttg
     1201 atgggagact ctattttact gacacaaaat ctatctgctc atttaaatgc tcgatatgag
     1261 cagtcgaaat tacattctga tgataatagt ttgtcagata aaacctttaa caattgggcg
     1321 ggagatattg gtttaaatta tcagctctct cctgtatggc aaattggcta taaactcagc
     1381 cgtggtttta gaacacctac cgcaagtgaa atgttcttta accgtgaagt tcaagggcgt
     1441 ggagcaagcc aaactttctt agcaaatact aacttaaaac cggaaacaag cttaggtaat
     1501 gaaatttcac tggtaggtaa tggttcatta ggtagcttga gcgtagccgc ttaccatacc
     1561 cactatagaa atctgattga tcttgccact attggtaaca atatttacca atcgcaaaat
     1621 gttaaccgag ctaaaatcaa aggtgttgat attaacggaa ctttagactt aaacacagcg
     1681 tggaatgcaa ttccacaagg ctttgagctt aatggtggat ttggttatgc tcgtggcaaa
     1741 cgtaatgatg gtaccgactt actcacggtt caaccgttaa aagcattgtt cggcataggt
     1801 tatcgagctg tgaacaatga ctgggcgata cacctaaacg gcacatacac acaaggcaaa
     1861 aaagcaaaat atgcacaaca gtatgctatt ttagccaata ctgggtattt aagttacgat
     1921 aaatcattaa ccacttaccc atacttaagt aattcagcca ccgtatttga cttagttgca
     1981 cacaaaaagt ttggagaaag agcgattgtt aaagttgggg tttataatct ctttaataaa
     2041 aaatattgga cttgggatag tttaagaact attggtataa ctagtcctgg agttgccaac
     2101 agtataactg gcgaaggctt aaatcgttac cttgctccag agcgctatgt aatggcatca
     2161 gtggagttta aattttagag ataagcatta aatgtaagag t
//
LOCUS       DANLVT010000197         2169 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.198, whole genome shotgun sequence.
ACCESSION   DANLVT010000197 DANLVT010000000
VERSION     DANLVT010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2169)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2169)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2169
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.198"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            96..755
                     /locus_tag="PXC99_002499"
     CDS             96..755
                     /locus_tag="PXC99_002499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL5418897.1"
                     /translation="MFNISKQQVLDAFHFRSACRSYDPNKKINKEDMDYILELGRLSP
                     SSVGSEPWKFLVLQNPETRQKIAPVSWGIKHPMEEMSHLVVILTKKNVRYDSVYMRDM
                     LAKRGLTYEQIEASLVRYKSFQEEDMKLLSERELFDWSTKQTYIALGNMMTGAALIGI
                     DSCPIEGFHYDTVNQILSDEGLFDLNEYGVSCMITFGYRNKEIKKKSRKPTEEVIAWI
                     E"
     gene            complement(815..2140)
                     /locus_tag="PXC99_002500"
     CDS             complement(815..2140)
                     /locus_tag="PXC99_002500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine transporter"
                     /protein_id="HDL5418898.1"
                     /translation="MLIFNLIVFAAILFLLAKIYKSTQKLGQTVFIGLFLGLASGAFL
                     QTFYEKATVDATLDWINLIGNGYVRLLQMIVMPLVFVSILSAITRLKEAGSLGKISFS
                     VLSVLLVTTAIAAAIGIALVYLFDLSAEGLVAGSRELAAQEKVVGRVEQVSNLSVPSM
                     LLSFIPKNPFLELTGANPTSIINTVIFSALLGIAALSLGKEDKALGERIAQGVETLNK
                     LVMRLVRFVIRLTPYGVFALMIKMAATSQWSDIVNLGSFIVASYIAIGLMFIVHGILL
                     FVAKINPLDYYKKVLPTLSFAFTSRSSAATIPLNIETQTNKLGNNSVIANFSATFGAT
                     IGQNGCAGIYPAMLAVMVAPTVGMDPFSLNYILTLILVVAISSFGIAGVGGGATFAAI
                     VVLSTLNLPIELVGLLISVEPIIDMARTALNVNGAMVAGTLTNKWVKAE"
BASE COUNT          711 a          479 c          407 g          572 t
ORIGIN      
        1 cctaattttt tgcaaattaa caggcgtgaa attcgcattc tgctctaaat caagttatca
       61 ttaatctact tatttcactt ataaaaggaa aaacgatgtt taatattagc aaacagcaag
      121 ttttagacgc ttttcacttc cgttcggcct gtcgcagtta cgatccaaac aaaaaaatca
      181 acaaagaaga tatggattat attttggaac tcgggcgtct ctcaccaagc tctgtcggtt
      241 ctgaaccgtg gaaattttta gtgctacaaa acccggaaac ccgtcagaaa atcgccccgg
      301 tttcgtgggg aattaaacac ccaatggaag aaatgagcca tttagtggtg attttaacca
      361 aaaagaatgt ccgttatgat tctgtctata tgcgtgatat gttagccaaa cgaggcttaa
      421 cctatgagca gattgaagcc tcgctggtac gctataagtc gttccaagaa gaggatatga
      481 aattgcttag tgaacgtgaa ttattcgatt ggagtaccaa gcaaacctat attgcattag
      541 gcaatatgat gaccggtgcg gctctgattg gtattgactc ttgcccgatt gaaggttttc
      601 attacgatac cgtaaaccaa attttatcgg acgaaggctt atttgaccta aacgaatatg
      661 gtgtgtcttg tatgataact tttggctatc gcaacaaaga aattaagaaa aaatcccgca
      721 aacctaccga agaagtgatt gcgtggattg aataatcacc ttaacttata aaaacgggcg
      781 aattaatcgc ccatttttat atctttagtt ttgactactc ggctttcacc catttattgg
      841 ttaatgtgcc cgccaccatt gcaccattca cgtttaaggc ggtgcgagcc atatcaataa
      901 tcggctcaac tgaaatgagc aagcctacta actcaatcgg cagattcaag gttgatagca
      961 ccacaatcgc cgcaaaagtt gcaccaccac ctacaccggc aatgccaaat gaggaaattg
     1021 ccaccaccaa aatcaaggtt aaaatatagt ttaagctaaa cggatccatt cccactgttg
     1081 gagcgaccat caccgccaac attgccggat aaattcccgc acagccattt tgcccgatgg
     1141 ttgccccaaa ggttgcagaa aagttggcaa tcacactgtt attacctaat ttattggttt
     1201 gcgtctcaat attcaacgga atggttgccg cactggaacg agacgtaaaa gcaaaactta
     1261 atgtcggcaa cacttttttg tagtaatcca acgggttgat tttagccaca aagagtaaaa
     1321 taccgtgcac aataaacatc aaaccaatcg caatgtatga tgccacaata aagctaccta
     1381 aatttacaat atcgctccat tgagaagttg ccgccatttt gatcatcaac gcaaatacgc
     1441 cataaggggt taggcgaatc acaaaacgta ctaaacgcat aaccagttta tttaaggtct
     1501 ctacaccttg tgcgatacgt tcgcccaacg ctttatcttc tttgcctaag ctcagtgcag
     1561 caatgcctag cagagccgag aaaataaccg tgttgatgat cgacgttggg tttgcaccgg
     1621 ttaattctaa aaacggattt ttcggaatga aagaaagcaa cattgaaggc acagataagt
     1681 tgctcacctg ctccacacgc cctaccactt tctcttgagc ggcaagctca cgggagccgg
     1741 cgactaaacc ctcggcagat aaatcaaaca gatacactaa agcaatacca atcgctgcgg
     1801 caatcgcggt ggtcactaat aacactgata gcacactaaa actaattttg cctaaagatc
     1861 ctgcctcttt taagcgggta attgccgata aaatagagac aaacaccaat ggcattacga
     1921 tcatttgtag caagcgaaca taaccgttac caattaagtt aatccaatca agagttgcat
     1981 caacagtagc tttttcgtaa aaagtttgca aaaaagcacc gcttgcaagc cctaaaaata
     2041 acccaataaa cactgtttga ccgagttttt gcgtagattt ataaatttta gccaataaaa
     2101 ataatattgc cgcaaagaca attaagttga aaataagcac agaacctcca aagtaaaacc
     2161 gcttattat
//
LOCUS       DANLVT010000198         2134 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.199, whole genome shotgun sequence.
ACCESSION   DANLVT010000198 DANLVT010000000
VERSION     DANLVT010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2134)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2134)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2134
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.199"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            322..576
                     /locus_tag="PXC99_002501"
     CDS             322..576
                     /locus_tag="PXC99_002501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418899.1"
                     /translation="MICHADPEYVKYNYAGLWEKGSDGTFFCNYQQFMPEVEAKESLR
                     KQEPELDDRYNEEEYSEEEYPDENDASDENDNYDETYNVF"
     gene            776..952
                     /locus_tag="PXC99_002502"
     CDS             776..952
                     /locus_tag="PXC99_002502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418900.1"
                     /translation="MATSSFDKRFVVKDPKAVKVLIEALQSPIKVVLPKKDLEKEEKE
                     ALCAIKKRLASMGL"
     gene            913..1464
                     /locus_tag="PXC99_002503"
     CDS             913..1464
                     /locus_tag="PXC99_002503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418901.1"
                     /translation="MCNQKTLSLYGLVKELGIEKTQLFLEQAFSCSRNKDVESFLLNK
                     AIRFETALAAATHLIINEQGDILAYFTLSFKEIEVEVSKSQLKKLTAGLSNDSHLRVL
                     LIGQIGKNEKVIDNPAKLPDILNHIYAQLYKAQRVLGGRVVILECENTPKLLELYKQN
                     KFQILNTIGSENGLKTLFFIPDF"
     gene            1534..1764
                     /locus_tag="PXC99_002504"
     CDS             1534..1764
                     /locus_tag="PXC99_002504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418902.1"
                     /translation="MSLLKKAQTFISIFNDVRTKNEAQRQSSNNLNVALKNAAEMRAE
                     MNGFSLKPQKRSTYFADHYGCGIHAVETYDNV"
     gene            1863..>2134
                     /locus_tag="PXC99_002505"
     CDS             1863..>2134
                     /locus_tag="PXC99_002505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011497995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5418903.1"
                     /translation="MFYSNNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTSYRYQQ
                     AVEQSGVDALLNQNRRVPNLKNRVDEATEQAVVKFAFDNPAFGQVRV"
BASE COUNT          764 a          373 c          382 g          615 t
ORIGIN      
        1 ccgctactca acatacaggg atggttatct tgataacgct cacgatactc ttgagcaata
       61 gctagtaatt gctgattagt catataaagt ctccaataac ataataaacc tgaaaacgtt
      121 cttagtattc tggcaacatt tttataaata gaaaccaaaa actatattca aatcattttt
      181 agtttctgct caacattcct atgtttttcc atacactgaa gtaaatttac ctaaccctat
      241 tttgctgtga aaccaaaact cctcacgctt atccttagta gcatttcgat gtcgctcact
      301 tatgccaccc ctcaattagg gatgatatgc cacgctgatc ctgaatatgt aaaatacaac
      361 tacgccggac tttgggaaaa aggcagcgat ggcacttttt tctgcaatta ccagcaattt
      421 atgcctgaag ttgaagctaa agaatcacta aggaaacaag aaccagaact tgatgataga
      481 tataacgaag aggaatatag cgaagaagaa tatcctgatg aaaatgatgc cagcgatgaa
      541 aacgataact acgatgaaac ttataatgtt ttctagtatg tatatggaaa ccggaggaat
      601 ccgtgattga aaaggcttgc atttccaaat atagtctata tattgtggta attgaaagta
      661 tttctatgct aacaagcata aggctatgta atcgaaaacc acccacaagg cctaaataca
      721 gtattattac agccatgagt aaccatggta atttaaatat ttaaggagtt ctataatggc
      781 aacatcatca tttgataaac gctttgtagt caaagatcca aaagctgtca aggtattaat
      841 tgaggcatta caaagcccaa tcaaagtagt tttacctaaa aaagacttag aaaaagaaga
      901 gaaagaagca ctatgtgcaa tcaaaaaacg cttagcctct atgggcttgt aaaagaacta
      961 ggtattgaaa aaacacaact ctttttggag caagcatttt cttgcagtag aaataaagat
     1021 gttgaaagtt ttctacttaa taaagcaatc agatttgaaa ccgcattagc agcagcaaca
     1081 catttaatca ttaatgaaca gggcgatatt ttggcttact ttaccctctc ttttaaagaa
     1141 attgaggtgg aagtaagcaa aagccaatta aaaaagctaa ctgctggttt aagtaatgat
     1201 tcacatttaa gagtattgct tatcggtcaa atcggcaaaa atgaaaaagt aattgacaat
     1261 ccagccaaat tgccagatat tctaaatcat atctatgcac aactttataa agcacaacga
     1321 gttttaggtg ggcgagtcgt tatattagaa tgtgaaaata cgcctaaatt attagaacta
     1381 tataaacaaa ataaatttca aattctcaat accattggaa gtgagaatgg tctaaaaaca
     1441 cttttcttta ttcctgattt ttaactacag ctaatatttc attagaagaa agtcgccagc
     1501 tttgtcagga agtcatatat gggagaaaga acaatgtctc tacttaaaaa agcacaaacg
     1561 tttatttcta tttttaatga cgtgcgaact aaaaatgaag ctcaacgcca gtcttcaaac
     1621 aatttaaatg ttgccttgaa aaatgctgct gaaatgagag ctgagatgaa tgggttctcc
     1681 cttaagcctc aaaagcgttc tacttacttt gctgaccatt atggttgtgg tattcatgca
     1741 gtagaaacct atgataatgt gtagaagatc agacttgatc tgacaattca ctctaaaaag
     1801 tgagagtttc ccgtttagaa tatgagtgtc caaattcaat ctaaacaaaa aaggaaactc
     1861 tcatgtttta ttctaacaac cctctcatta aacacaagac cggtttatta aatttagcag
     1921 aagaactggg caatatctct caagcctgta aggtgatggg gatgagtcga gatacatcct
     1981 atcgctatca acaagcagtt gagcaaagtg gggtggatgc cttacttaat caaaatcggc
     2041 gtgttcctaa tctaaaaaat cgtgtggatg aggcaacaga gcaagctgtt gtgaagtttg
     2101 cattcgataa tccggcattt gggcaggtac gagt
//
LOCUS       DANLVT010000199         2086 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.200, whole genome shotgun sequence.
ACCESSION   DANLVT010000199 DANLVT010000000
VERSION     DANLVT010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2086)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2086)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2086
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.200"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            60..1205
                     /gene="lldD"
                     /locus_tag="PXC99_002506"
     CDS             60..1205
                     /gene="lldD"
                     /locus_tag="PXC99_002506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent L-lactate dehydrogenase LldD"
                     /protein_id="HDL5418904.1"
                     /translation="MIISSANDYRRAAKRRVPPFMFHYADGGSYAEQTLRRNVSDLED
                     IALRQRVLKDMSQLDTGIELFGEKLSMPVTLAPVGALGMYARRGEVQAAKAADNKGIP
                     FTLSTVSICPIEEVAPAIKRPMWFQLYVLKDRGFMKNALERAKAAGCSTLVFTVDMPT
                     PGARYRDMHSGMSGPYKDIRRVLQAMVHPFWAWDVGIHGKPHTLGNVSNYMGKPIDLN
                     NYIGWLTDNFDPSISWKDLEWIREFWDGPMVIKGILDPEDAKDAVRFGADGIIVSNHG
                     GRQLDGVLSSAKALPSIADAVKGEIKILADSGIRNGLDVVRMLALGADCTMIGRSFVY
                     ALSAAGQAGVENLLDIFLKEMKVAMTLTSNAKISDIGRDALVDLSNL"
     gene            complement(1259..1528)
                     /locus_tag="PXC99_002507"
     CDS             complement(1259..1528)
                     /locus_tag="PXC99_002507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418905.1"
                     /translation="MLSEERFGFFYIFIFIYFSLLSLSIGYIRPELRTTYDYLEIENK
                     RYYVLSIHRNNIYVLGEKTKDNDEFLFFNQDTLKYYRINITKMPN"
     gene            complement(1603..1989)
                     /locus_tag="PXC99_002508"
     CDS             complement(1603..1989)
                     /locus_tag="PXC99_002508"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418906.1"
                     /translation="MTNQKFINSSLTLAFFTLISFSTAYCYAWGIAAFHGYPWWHVEV
                     GNAGIARALAYVFGTFLTIFLFYLIGYALVNKVFKLHYFKYLGWLRVSVLVTIFSLPV
                     MISFYLFIGKVPMYLHLLYLGTTTSI"
BASE COUNT          624 a          429 c          477 g          556 t
ORIGIN      
        1 tatttttatt ttaaagtaga atagccgcac ttttttctta atgatttatg aggttttaaa
       61 tgatcatttc atctgcaaac gattaccgcc gtgcggcaaa acgtcgtgtt ccccctttta
      121 tgttccatta tgcggatggc ggttcttacg ccgagcagac cttacgtcgt aatgtgagcg
      181 atttggaaga catcgccctg cgtcaacgtg tgttaaaaga tatgtcgcaa ctagacaccg
      241 gcatcgagct gttcggcgaa aaactgtcta tgccggtgac cctcgcccct gtcggtgcat
      301 taggaatgta tgcccgccgt ggcgaagtgc aagcggccaa agccgcagat aacaaaggta
      361 ttccgtttac cctttccact gtctctattt gcccgattga agaggttgca ccggcaatca
      421 aacgcccgat gtggtttcag ctctatgtgt taaaagatcg gggctttatg aaaaatgcat
      481 tggaacgagc caaagccgcc ggttgttcca cgctagtgtt taccgtagat atgccgaccc
      541 ccggcgcacg ttatcgtgat atgcactccg gaatgagcgg cccatacaaa gacattcgcc
      601 gtgtgttgca ggcaatggtt cacccgtttt gggcgtggga cgtgggcatt cacggtaaac
      661 cccacacgtt aggcaatgtg tcaaactata tgggtaaacc gattgatctg aacaactaca
      721 tcggctggct gaccgataat ttcgacccat caatttcgtg gaaagattta gagtggattc
      781 gtgaattttg ggacggcccg atggtgatca aaggcattct cgacccagaa gatgctaaag
      841 atgccgtaag atttggtgcg gacggtatca tcgtctccaa ccacggtggt cgtcagttag
      901 atggggtact ttcttctgcc aaagccctgc caagcattgc cgatgcagta aaaggggaga
      961 tcaaaatcct tgccgactct ggtatccgca acggcttaga tgtggtgaga atgctggctc
     1021 tcggcgcaga ttgtacgatg atcgggcgtt cctttgttta cgctcttagc gccgccggtc
     1081 aagccggtgt ggaaaacctg ctcgacatct tccttaaaga aatgaaagtg gcgatgacac
     1141 ttaccagcaa tgctaaaatt agcgacatcg gcagagatgc tttggtagat ttaagtaatc
     1201 tttagctcaa atagccacaa tccgcacgtt ttaggtgcgg attgttattt tagataggct
     1261 aatttggcat tttggtaata ttaatgcggt aatatttcaa tgtatcttgg ttgaaaaaga
     1321 gaaattcatc gttatcttta gttttttcgc ccagcacata aatgttattg cgatgaatag
     1381 ataagacata atatcgctta ttttcaattt caagataatc atacgttgtt ctcagctcag
     1441 ggcgaatgta gccaatactc aaagaaagta agctaaaata gatgaaaata aaaatataga
     1501 aaaaaccgaa gcgttcttcg cttaacattt tttgaatatc taagtggaat acgcggtggc
     1561 cccaatgttt gtgaaataat aatactgata gggtagttgt ccctagatag aggtagttgt
     1621 ccctagatag agtaggtgta aatacattgg cactttgcca ataaacagat agaaactgat
     1681 cattactggc aagctaaaaa tagtaacaag aacactcacc cgtagccagc caaggtattt
     1741 aaagtaatgc agcttaaaaa ctttattaac taaagcgtat cctatcaaat aaaaaagaaa
     1801 gatagttaaa aatgtgccaa aaacgtaggc tagtgcgcga gctataccgg cattaccaac
     1861 ctcaacatgc caccacgggt agccatgaaa agcagcaata ccccaagcat aacagtaagc
     1921 ggtagaaaaa gagattaaag taaagaaagc gagagtaaga gaagagttga tgaatttctg
     1981 attagtcata acagtaaata gattgcacct acttagttaa agatgaaaca caagaaagca
     2041 gactgagttt agcttccacc caactccttt gtttagagga gaactt
//
LOCUS       DANLVT010000200         2077 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.201, whole genome shotgun sequence.
ACCESSION   DANLVT010000200 DANLVT010000000
VERSION     DANLVT010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2077)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2077)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2077
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.201"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            166..606
                     /locus_tag="PXC99_002509"
     CDS             166..606
                     /locus_tag="PXC99_002509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3577 domain-containing protein"
                     /protein_id="HDL5418907.1"
                     /translation="MTTQTSTQKNYFNLHTTGIGYLSNIRTVTPKKGDEFLACTIGAL
                     IGEAGEGAKAEYRYFDCKVVGEAAIDLVNRAKASVEADKKVLISFVLADLWTDTFTYQ
                     KDGKNHKKGDTGVMLKARLIRIKSVKIDGVVKYQEPEKIDAQSE"
     gene            713..1360
                     /locus_tag="PXC99_002510"
     CDS             713..1360
                     /locus_tag="PXC99_002510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3560 domain-containing protein"
                     /protein_id="HDL5418908.1"
                     /translation="MTINTYAKFAPTVFVAKCPEAHTKGEIITLTSKYGNETEVQIHN
                     LVKQDNEHYYYSFTRCDGMDSQSFAQQKAERYQGYADNATKRSQSWANAANEGLEFLR
                     LGEPIKIGHHSEKRHRNLIERNARRMDNALSEMNKTESYESRIAYWEKMAGKIDLSMP
                     ESLEYFKFELDKAKEKHKELKDNPEKREHGYSLTYAKKAVNELEKKVKLAELLWA"
     gene            1384..1791
                     /locus_tag="PXC99_002511"
     CDS             1384..1791
                     /locus_tag="PXC99_002511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization protein"
                     /protein_id="HDL5418909.1"
                     /translation="MNRQGVYINGKQVFDSKGKEINSIEIIGSTVQTVVGINKGSISM
                     VSSNNALIVDGQTIAFEPSPTIHIEVFGNITNLNSGAGNVNIKGDVSHIETVSGDVNV
                     DGTVTSDVRTVSGDIRCKTIAGKVETISGDIYR"
     gene            1869..>2077
                     /locus_tag="PXC99_002512"
     CDS             1869..>2077
                     /locus_tag="PXC99_002512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418910.1"
                     /translation="MKDILLDFDDTSCYLGDWEEILEEYNDRVRVEDFWHYAKEFETV
                     PHLGNLYQEHVILKLIARFCIELDI"
BASE COUNT          686 a          360 c          437 g          594 t
ORIGIN      
        1 agcattccga aagggaactc cacaatattg tgggaatgcc gattaaacct ctaccatttc
       61 ggtgaattta catcgaaatt tcatttaact tccaccttgc ggggaacatt tttcccgtgt
      121 tgggtaagga tgtttctccg cttttttact ttggagaaac agactatgac aactcagact
      181 tctactcaaa aaaattactt caatcttcac acaaccggaa tcggctatct gagcaatatc
      241 cgcacagtga ctccgaaaaa aggtgatgaa ttcttagctt gtactattgg tgctctcatt
      301 ggagaagcag gagaaggtgc aaaagcagaa tatcgctatt ttgattgcaa agttgtgggc
      361 gaagctgcga ttgatttggt caatcgggca aaagcctctg ttgaagctga taagaaagta
      421 ctcatctctt tcgttttagc tgacctttgg acagatactt tcacctatca aaaagatgga
      481 aagaatcaca aaaaaggtga tactggtgta atgctgaaag ctcgcttaat tcggattaag
      541 tctgtcaaaa ttgatggagt ggtaaaatac caagaaccag aaaaaataga cgcacaatct
      601 gagtaatttt acctaagccc gacattttat gttgggcttt actttatgtc ccgtagggaa
      661 atgctccctg cggtgtgttt cccttcattt ttacaatttt aggagaaaca ctatgactat
      721 taacacttat gcaaaatttg cacctactgt tttcgtagca aaatgccctg aagcacatac
      781 caaaggtgaa attatcactc taaccagcaa atatggtaat gaaaccgaag ttcaaataca
      841 taacttagtg aagcaggata atgagcatta ttactattct ttcactcgtt gtgatgggat
      901 ggatagtcag tcatttgctc aacaaaaagc agaacgctat caaggctatg cagataatgc
      961 aaccaaacgc agccaaagct gggcaaatgc agctaatgag gggctggagt ttttgagact
     1021 aggtgagcca ataaaaattg ggcatcatag tgaaaaacgc caccgtaacc tcattgaacg
     1081 taatgcccgt cgaatggata atgcgctttc agaaatgaac aaaacagaaa gctatgaatc
     1141 ccgtattgca tattgggaaa aaatggcagg gaaaattgac ctttctatgc cggaaagtct
     1201 ggaatacttt aagtttgaat tggataaagc caaagaaaag cataaagaat tgaaggacaa
     1261 ccctgagaaa cgagagcatg gttattcact gacttatgct aaaaaagcag ttaatgaact
     1321 tgagaaaaaa gtgaaattag ctgaattact ttgggcataa tttttacata gaggattatt
     1381 aatatgaatc gacaaggcgt ttatatcaat ggtaaacaag tctttgactc taaaggcaaa
     1441 gagattaata gcattgaaat cattggtagc acagtgcaaa cagtcgttgg gataaataaa
     1501 ggatctatct caatggtctc cagcaacaat gcattaattg ttgatgggca aacaattgca
     1561 tttgaacctt ctccgactat ccatattgaa gtatttggta atattaccaa tctcaattca
     1621 ggagcaggaa atgtgaatat caaaggtgat gtaagccata tagagactgt gagtggtgat
     1681 gtgaatgttg atggtactgt gacttcagat gtaagaacag taagcggtga tattcgctgt
     1741 aaaactattg caggtaaagt cgaaaccatc agcggagata tttatcgcta atttttgcta
     1801 cttaccctat cgggaaacat tcccgatagg tgtgtttccc cacttttatt taaattttgg
     1861 agaaacatat gaaagacatt cttttggatt ttgatgacac ctcttgttat ttaggtgatt
     1921 gggaagagat actagaagaa tacaatgatc gtgttcgagt tgaggatttt tggcattacg
     1981 ctaaagaatt tgaaaccgta cctcatttgg gcaacctata ccaggagcat gtcatcctga
     2041 agttgattgc tcgattctgt attgaactgg atattga
//
LOCUS       DANLVT010000201         2021 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.202, whole genome shotgun sequence.
ACCESSION   DANLVT010000201 DANLVT010000000
VERSION     DANLVT010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2021)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.202"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(134..352)
                     /gene="ilvM"
                     /locus_tag="PXC99_002513"
     CDS             complement(134..352)
                     /gene="ilvM"
                     /locus_tag="PXC99_002513"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 small subunit"
                     /protein_id="HDL5418911.1"
                     /translation="MEEYQLTLKANKRPETLERILRVIRHRGFEVKCLNVESTDSAFN
                     LNFTLASKRPLSLLSHQLEKLFDIIEIN"
     gene            complement(362..2014)
                     /locus_tag="PXC99_002514"
     CDS             complement(362..2014)
                     /locus_tag="PXC99_002514"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 catalytic subunit"
                     /protein_id="HDL5418912.1"
                     /translation="MNGARFITESLKAHGVTTLFGYPGGAIMPTYDAIYDSGLDHLLC
                     RNEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLGDAALDSIPVVAITGQVASH
                     LIGTDAFQEADVLGLSLACTKHSFIVQNIEELPEILALAFQIAQSGRPGPVLVDIPRD
                     VQLAQTSALPIVYPKEPADAQDPNKLVVAKQLLATAKRPVLYVGGGVSMADGVQAVRN
                     FVKIANIPSVSTLKGLGTIDPTDPLYMGMIGMHGTKAANYAVQECDLLIACGARFDDR
                     VTGKLDTFAPHAKVIHIDIDNAEINKLRQAQVALKGNLIEAVNYLAQPLDIEPWREDV
                     RNLKQQFDFQYQENSGDGNIDAVALLHTLSQRKAKNSIVTTDVGQHQMWSAQHLTYHD
                     PKNYITSAGFGSMGFGLPAAIGAIKARAEDQVILITGDGSIMMNIQELGTLKRADLAV
                     KILLLDNQRLGMVRQWQSLFFHGRHSQTILDDNPDFVLLAKAFDIDGERIEKASEVSD
                     AIDRMFNAKGAYLLHVCIPQEDNVWPLVPPGACNADMLDDEV"
BASE COUNT          583 a          442 c          427 g          569 t
ORIGIN      
        1 gaaaataaag agcaataagt gaaaaaaaag agttgaaatt tgaagaaatg aataaaatca
       61 aaaggatagc gaatgataaa ttttaagcat aaaaaagccg tgtatttttt tacacggcga
      121 atgaaaagtc tgattaattg atttcaatga tatcaaacag tttttctaat tgatggctta
      181 aaagagagag tggacgttta cttgctaatg taaaatttag gttaaaggcg ctgtctgttg
      241 attctacatt taagcatttc acctcaaaac cacggtgacg tataacccgt aaaatacgct
      301 ctaaggtttc agggcgtttg ttagctttaa gcgttaattg atattcttcc atcttattct
      361 cctatacctc atcgtctaac atatcggcat tacacgcccc cggcggtacc agtggccaaa
      421 cgttatcttc ctgtggaata caaacgtgaa gtaagtaagc ccctttggca ttgaacattc
      481 tgtctattgc atctgacact tcgctcgctt tctcaattcg ctcaccgtca atatcaaagg
      541 ctttcgccaa caacacaaaa tcagggttat catctaaaat ggtttggctg tgtcgcccgt
      601 ggaagaacag cgattgccat tggcgaacca tacctaaacg ttggttatcc agtaatagga
      661 ttttgaccgc taaatcagct cttttaagcg tgccgagttc ttgaatattc atcataatcg
      721 agccatcacc ggtaattaaa ataacctgat cttccgctcg agctttgatt gccccaatcg
      781 ccgcaggcaa gccaaaaccc atagagccaa aaccggcaga ggtgatatag tttttcggat
      841 cgtgataagt taaatgttgt gccgaccaca tttgatgctg ccctacatcg gtagtgacga
      901 tgctgttttt ggctttccgc tgtgaaagcg tgtgtaataa cgccacggca tcaatattgc
      961 catcaccact attttcttga tattgaaagt caaattgctg ctttaaatta cgcacatctt
     1021 cacgccatgg ttcaatatct aacggttgag ccaagtaatt cacggcttca atcaaattcc
     1081 cttttaaggc aacttgtgct tgacggagct tgttgatttc cgcattgtcg atatcaatgt
     1141 gaatcacttt agcgtgaggg gcaaaagtgt ctaatttgcc ggtaacacgg tcatcaaagc
     1201 gggcaccaca ggcaatgagt aaatcacact cttgtaccgc gtaatttgct gcttttgtgc
     1261 cgtgcatacc gatcattccc atatagagcg gatcggttgg atcgatagtg cctaaccctt
     1321 ttaaggtaga aacagacgga atatttgcaa tttttacaaa atttctgacc gcttgtacac
     1381 catcagccat actaacgcca ccgccgacat aaagtaccgg gcgtttggcg gtggctaata
     1441 attgtttggc aaccactaat ttgttgggat cttgtgcatc ggcaggttct ttaggataaa
     1501 cgataggcag agccgaagtt tgagctagtt gcacatcacg tggaatatcg accagcaccg
     1561 gaccaggtct gccactttgt gcaatttgga atgcgagggc taaaatttca gggagctcct
     1621 caatattctg aacaataaaa ctgtgtttag tgcaagcgag tgacaaacct agtacatcag
     1681 cttcttggaa ggcatcagtg ccgattaaat ggctggcaac ttgtccggta attgctacca
     1741 caggaataga atcaagtgcg gcatcgccta aaccggtgat taaattagtt gccccagggc
     1801 cggaggtcgc aatacaaacc cctactttac ctgttgcacg ggcataaccg atagctgcca
     1861 ttgcagcacc ttgttcattg cggcaaagta aatgatctaa gcctgaatca taaattgcat
     1921 cataggtagg cataatagcc ccgcccggat agccaaaaag tgtcgttacc ccgtgagctt
     1981 ttaaactctc ggtgataaat cttgctccat tcatggatgt t
//
LOCUS       DANLVT010000202         2002 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.203, whole genome shotgun sequence.
ACCESSION   DANLVT010000202 DANLVT010000000
VERSION     DANLVT010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2002)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2002)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2002
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.203"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..633)
                     /locus_tag="PXC99_002515"
     CDS             complement(<1..633)
                     /locus_tag="PXC99_002515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HDL5418913.1"
                     /translation="MAEGLLLTPYFQTEVGIVFYKVPKDVSPAAFGERTLLQPAPTDL
                     ATVKSGKVANFSANSTACKELAVFAKSAKVRSTLNQRDKYSNDLPYIRFVKSIQTCQC
                     RDGKYCHTEKVLVENKNGAVQLCWHHDKMRMDGEIPNEKLEALADENWEKFIAQQIRL
                     TLRKTQSTAIEFADLVLFASIKGLLDELDSKALQQFLGYPPLNNSGVSKES"
     gene            complement(760..1353)
                     /locus_tag="PXC99_002516"
     CDS             complement(760..1353)
                     /locus_tag="PXC99_002516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL5418914.1"
                     /translation="MTDFDKNTYQTPNYVRNWLNHRYAWFHIDGCSNGQNTLYTYWIG
                     RAADGLDDDKLSCQIADDFLADDLFDVLLDKVSDWGELLRIFVNPPYSDPLPFVQRAA
                     ELKKAGHLVVMLLPADKTTEWYTIIQQHANEVIDIIGYHDEKGTWRTGRIQFINPVTG
                     KPAQGNNKGSMIVVFDPFIEGIVTRQMPLDKIKEWGK"
     gene            complement(1364..>2002)
                     /locus_tag="PXC99_002517"
     CDS             complement(1364..>2002)
                     /locus_tag="PXC99_002517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conserved phage C-terminal domain-containing
                     protein"
                     /protein_id="HDL5418915.1"
                     /translation="NNTNYKNNNDHTTPLNPPAGEPAPAEVVLNYLNSALVTLAVQLG
                     ERKPVGYSLKPWAKNITARIRESSVADCCQVVDYLVAKWGRDEKMREYLCPKTIFRQS
                     NFADYFPKSTAWANNGKPVCVNGKWVTPAELEKRLIMPTVDEVRALFQKSLSGNPFKA
                     LDFTNKRNLVMYHATINTRNKRPLERDLPMIISQEIKNAVERIDRLRVPTFS"
BASE COUNT          552 a          467 c          376 g          607 t
ORIGIN      
        1 actttctttg ctcacaccgc tattattcag tggtggatag ccgagaaact gctgtaatgc
       61 cttgctgtct aattcatcaa gcaaaccttt gatactcgca aacaacacta agtccgcaaa
      121 ttcaatagcg gtagattgcg ttttgcgtaa ggttaagcgg atttgttggg cgataaattt
      181 ttcccagttt tcatccgcta gtgcttctaa tttttcattc gggatttcac cgtccattcg
      241 cattttgtcg tgatgccaac aaagctgtac cgcaccgttt ttattctcta ccagcacttt
      301 ttccgtgtgg caatatttgc catctcggca ttggcacgtc tgaattgact ttacaaaccg
      361 gatataaggc aaatcattac tatatttgtc acgctgattt agcgttgaac gaacttttgc
      421 cgatttagca aacaccgcca gctctttaca agcggtcgaa tttgccgaaa aatttgcaac
      481 cttgcctgat ttaaccgtcg ctaaatcggt cggtgcaggt tgcaacaaag ttcgctcacc
      541 gaaagcagca ggagaaacat ctttaggcac tttgtaaaac acaataccca cttcggtttg
      601 aaagtaaggg gtaagtagca aaccttccgc cattattgcc cccatttctc ggtttcatca
      661 taggctttca cgaatagcat aaatacgcca atacagatta aaaaaatcag tacgccaatt
      721 actgcaccaa taccaataaa tagttcccaa taatccattt tatttacccc attccttgat
      781 tttatctagt ggcatctgac gagttacaat gccctcaata aatgggtcaa acacaacaat
      841 catcgagcct ttattattac cttgtgccgg tttacctgtt accgggttga taaattgaat
      901 ccgccctgtc cgccaagtgc ctttttcatc gtgatagcca ataatatcaa ttacctcatt
      961 agcgtgttgt tgaatgatgg tgtaccattc tgttgtttta tccgctggta ataacatcac
     1021 aaccaaatga cctgcttttt tcaattctgc cgctcgttga acaaaaggca gtggatcaga
     1081 atatggcgga ttaacgaaaa tacgcagtaa ttctccccag tctgaaactt tatctagtag
     1141 cacatcaaat aaatcatcgg ctaaaaaatc atcggcaatt tggcaactta atttatcatc
     1201 atctaaaccg tctgccgctc taccaatcca ataggtgtac aacgtatttt gtccgttaga
     1261 gcaaccgtca atatgaaacc aagcataacg atgatttagc caattacgca cataattagg
     1321 tgtttggtaa gtgtttttat caaaatctgt cattgtctaa tccttacgaa aatgttggta
     1381 ctctcaaacg gtcgatacgc tcaaccgcat ttttaatttc ttggctgata atcatcggca
     1441 aatcacgttc aagtggtcgc ttgtttctgg tgttgattgt ggcgtggtac atcactaaat
     1501 ttcgtttgtt ggtaaagtcc aatgccttaa acggattgcc actgagtgat ttctggaaca
     1561 aggctcgtac ttcgtccacc gttggcataa tcaagcgttt ttccagctcc gccggtgtaa
     1621 cccacttacc atttacgcaa acaggctttc cgttattagc ccaagcggtc gattttggaa
     1681 aataatctgc aaaattcgat tggcggaaaa tcgttttcgg gcagaggtat tcacgcattt
     1741 tttcatctcg tccccattta gcgacaaggt aatccaccac ttggcaacag tccgccaccg
     1801 aactttcacg aatgcgagca gtaatatttt ttgcccacgg cttgagcgaa taccccacag
     1861 gcttacgctc accaagctgt accgccaacg ttaccaaagc cgaattgaga taattcaaca
     1921 caacttcagc cggggcaggt tcccccgctg ggggattaag gggggtagta tgatcattat
     1981 tatttttata attagtatta tt
//
LOCUS       DANLVT010000203         2000 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.204, whole genome shotgun sequence.
ACCESSION   DANLVT010000203 DANLVT010000000
VERSION     DANLVT010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2000)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2000)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2000
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.204"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..1179)
                     /locus_tag="PXC99_002518"
     CDS             complement(<1..1179)
                     /locus_tag="PXC99_002518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HDL5418916.1"
                     /translation="MSIQQKKRHSRWYERIFFSTAVQSILGVMFSSVLPAIYFWGEKF
                     NSIETRSNTIIATSLAFVMIAISLRVLMKYPGNKSASFVFSTVISWYAVLLIVLTIFR
                     FDYSNTLLGTSFILTILFCFIGYFLSRSWIIPKIALVPFGRAINLNRIQNVEWIQLSE
                     PILGEKRINSIAVDLHYPDLSAEWHKFLAKCTLNGIPVYNVRQLEESLTGRVKIRHMY
                     ENDLGSLLPSPIYSLVKRIIDIALIVATFPITLPIMTITAIAIRLESEGGAMFIQKRV
                     GQGGKEFNIYKFRSMCKDSEKDDAQFASSADMRVTRIGKFIRKTRIDELPQFFNVLKG
                     DMSLIGPRPEQTAFVDKFEEEIPFYNYRHIVKPGISGWAQVVQGYAADVDDTKVKVEH
                     D"
     gene            complement(1183..1991)
                     /locus_tag="PXC99_002519"
                     /pseudo
     CDS             complement(1183..1991)
                     /locus_tag="PXC99_002519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_162680708.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
BASE COUNT          687 a          403 c          295 g          615 t
ORIGIN      
        1 gtcatgttct acttttactt ttgtatcatc aacatctgcc gcataacctt ggacgacctg
       61 agcccaaccg gaaatacccg gtttaacgat atggcgataa ttatagaatg gaatttcctc
      121 ttcaaattta tctacaaagg ctgtctgttc tgggcgagga ccaattaagc tcatatcacc
      181 ttttaataca ttaaaaaact gaggtagctc atcaatacga gttttacgga taaatttccc
      241 aatacgagtt accctcatat ccgcactcga agcaaactgt gcatcatctt tttcggagtc
      301 tttacacata ctacgaaatt tataaatatt aaactccttt ccaccttgcc caacgcgttt
      361 ttgaataaac attgctccac cttcactttc taagcgaata gcaatagcgg tgattgtcat
      421 aataggtaaa gtaatgggaa acgtagcaac aatcaatgca atatcaatga tacgcttcac
      481 taatgagtaa attggagaag gaagtaatga acctaagtca ttttcataca tatggcgaat
      541 tttgacacgc ccggttaaag attcctcaag ctggcgaacg ttatatacag gaataccatt
      601 caatgtacat ttcgctaaaa atttatgcca ttctgcggac aaatcaggat agtgtaaatc
      661 taccgcaata gagttaattc tcttttcccc caatattggt tcacttaatt gaatccactc
      721 tacattctga attcggttca aattgatagc tcttccgaat ggaaccaaag cgattttagg
      781 gataatccaa cttcttgaaa gaaaataacc aataaaacaa aatagaattg tgagtataaa
      841 gctcgtacct agcaatgtat tagaataatc aaatctaaat attgttaaca cgattaataa
      901 aaccgcatac caagaaataa cggtggaaaa aacaaaactt gctgacttat tacctggata
      961 tttcattaac actcttaagc tgatagctat cattacaaag gcaagagaag tcgctataat
     1021 cgtattagaa cgagtttcaa tagaattaaa tttctctccc caaaaataga tagcgggtaa
     1081 gacacttgag aacataacgc ccaaaatact ttgaacagct gtactaaaaa agatacgttc
     1141 ataccaacga gagtgtcttt tcttttgctg aatgctcata atttatcctt ttcttaattt
     1201 cttataaagt cttcctaaaa gagatctagg caataaccgt ggtaaggctc taagtataaa
     1261 aaacatgctt gatgagatta ttgattgtaa tcccaactct tttttcaatt ttgctaattg
     1321 gtactcactc ttaatgtaat tccacccttt acgccgagcg tacattgcag aacctgaacg
     1381 aacatttacc agtacatctg gtaaattata cacctcatat ttctgtgtaa taactcgtaa
     1441 ccataaattg taatcttcca tataaagatg atgctgatag cctccaacat gctcgatcac
     1501 agatttttta taggctactg ccatatggtt aaaaggattt cttagtaatg ctgaaatacg
     1561 aatttcatca tcattaatgg gcacttgttt tatacccaga gaattagaca ttgtttcgtc
     1621 aaattcttca acttgtcccc ccaataaaac cacatcagga tttttactaa taaaatcaat
     1681 ttgcttttca aatcgagatg gtaagcaaat atcatcagta tccattctaa acacccactc
     1741 attagagcag tgttttaagc cttcatttaa ggccggccta aacccacatt ttgtggtaaa
     1801 ctaacaacaa caagcggtaa tttttcagta aaatgttgca caattcgctc taaatctcca
     1861 ggaattatac catcaaaaac cacaacaatt tcacttgctg gtaaagtttg ggatactaaa
     1921 gaatctaaac acatctctaa ataagctggt ttttctttat aatacaaaga tattaatatc
     1981 gaaaacttca caactacttt
//
LOCUS       DANLVT010000204         1960 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.205, whole genome shotgun sequence.
ACCESSION   DANLVT010000204 DANLVT010000000
VERSION     DANLVT010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1960)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1960)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1960
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.205"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            45..725
                     /locus_tag="PXC99_002520"
     CDS             45..725
                     /locus_tag="PXC99_002520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00153 family protein"
                     /protein_id="HDL5418917.1"
                     /translation="MALNNILGLFAQSPLKPLQKHSNKVTECSELLESFFEATFEHDW
                     EKAAEVRGKIVDLERRADALKREIRLKLPRGLFMPVERGDLLELVTQLDKLANYSRDI
                     SGRIIGRKLIIPTEMQPLFKKFLSRSIDASRQVRKVLDEMDQLLETGFRGRELDFVNK
                     MILELDQIEDDTDQYQITLRHTLLELEKNLNPIDVMFLYKCIERISVLADQAQRIGSR
                     IELMLAKS"
     gene            737..>1960
                     /locus_tag="PXC99_002521"
     CDS             737..>1960
                     /locus_tag="PXC99_002521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HDL5418918.1"
                     /translation="MELLNQYGSILVIITAIVGFMMAFGIGANDVSNAMGTSVGSGTI
                     TIKQAILIAMVFEFAGAYLAGGEVADTIKSGIIDPAQFANSPDILVLGMMASLCAAGM
                     WLIIATKMGWPVSATHTIIGAVIGFALITIGSDAIQWDALGGIVGSWFVTPILAGIVA
                     YSIFINSQKLIFNRSNPFKQAKKYGPMYMGITIFILVIVTVSKGLKHVGLHLDTAETL
                     GISFALALLAFIIGYFYFRSKSFAMKARAEEKGFAGVEKIFSILMLITACAMAFAHGS
                     NDVANAIGPLAAVESIVRSGGMIEGKTTLAPWILPLGALGMMIGLAIMGKNVMATVGT
                     GITDLTPSRGFAAQFACAVTVVIASGTGLPISTTQTLVGAVLGVGFARGIAALNLGVI
                     RNIVISWVITLPVGAV"
BASE COUNT          551 a          351 c          426 g          632 t
ORIGIN      
        1 acagtaagaa gtcattgtca atattatcac tatggagata ttttatggca ttgaataaca
       61 ttttaggttt attcgcccag tccccactta aaccgttaca aaaacactca aataaagtga
      121 ctgaatgtag cgagttatta gaatcttttt ttgaagcgac ttttgaacat gattgggaaa
      181 aagcagctga agtgcgcggt aaaattgttg atttagaacg ccgcgcagat gcccttaaac
      241 gtgaaatccg cttaaaactg cctcgtggtt tatttatgcc agttgaacgc ggtgatttat
      301 tagaactagt cacacaatta gataagttag caaactattc aagagatatt tccggtcgca
      361 ttattggtcg taaattaatc attcctaccg aaatgcaacc acttttcaaa aaattccttt
      421 ctcgtagtat tgatgctagc cgtcaggtac gcaaagtttt ggatgaaatg gatcagttat
      481 tagaaactgg ttttagaggg cgagagcttg atttcgtcaa taaaatgatt cttgaacttg
      541 accaaattga agatgatacc gaccaatatc aaattacatt acgtcataca cttcttgagt
      601 tagaaaaaaa cctgaaccct attgatgtga tgtttttata caaatgtatt gaaagaatca
      661 gcgttctagc tgaccaagcc cagcgaattg gttctcgtat tgaacttatg ctggcgaagt
      721 cataggagaa aattaaatgg aattactcaa tcaatatggc tcaatactgg tgattattac
      781 tgctattgta gggtttatga tggctttcgg tattggtgct aatgatgttt caaatgccat
      841 gggaacatcc gtcggctctg gaacaattac gattaaacaa gctattttaa ttgctatggt
      901 atttgaattt gctggtgctt atctggcagg cggtgaagtc gcagatacaa ttaaaagtgg
      961 cattattgat ccggcacaat tcgccaatag ccctgatatc ctggtacttg gaatgatggc
     1021 atctctctgt gctgccggaa tgtggctaat tattgcaact aaaatgggtt ggccggtttc
     1081 agcaactcac acaatcattg gtgccgttat tggttttgca ttaatcacta ttggttcaga
     1141 tgcaattcaa tgggatgcat taggtggaat tgttgggagt tggtttgtga cccctattct
     1201 tgcggggatc gtagcatatt cgatctttat taactcacaa aaactgatct ttaaccgctc
     1261 aaacccattc aaacaagcga aaaagtatgg cccgatgtac atgggaatta ctatttttat
     1321 tttagttatt gtaaccgtgt caaaaggctt aaagcacgta ggattacatc tagatacagc
     1381 tgaaacattg ggaatttcat tcgcgcttgc cttacttgct tttatcattg gatattttta
     1441 tttccgcagt aaaagctttg caatgaaagc tcgtgcagaa gagaaaggct tcgctggcgt
     1501 tgagaaaatt tttagtattt taatgcttat tacggcctgt gctatggctt ttgctcatgg
     1561 ctctaatgat gttgctaatg ctattgggcc tctagctgct gttgaatcta ttgtaagaag
     1621 tggtggaatg attgaaggta aaacgacttt agccccttgg attctcccac taggcgcctt
     1681 aggtatgatg attggtttag ctattatggg caagaatgta atggctacag taggtactgg
     1741 tattaccgac cttactccaa gccgtggctt tgctgctcaa tttgcctgcg ccgtcacggt
     1801 tgtcattgca tcaggtactg gtttaccaat atcaacaacc caaacgcttg taggagcagt
     1861 attaggtgtg ggattcgccc gtggtattgc tgcacttaac ttaggcgtta ttcgtaatat
     1921 tgttatatca tgggtaatta ccttgcctgt aggtgctgtg
//
LOCUS       DANLVT010000205         1914 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.206, whole genome shotgun sequence.
ACCESSION   DANLVT010000205 DANLVT010000000
VERSION     DANLVT010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1914)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1914)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1914
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.206"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(32..208)
                     /locus_tag="PXC99_002522"
     CDS             complement(32..208)
                     /locus_tag="PXC99_002522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418919.1"
                     /translation="MAYVRIYQGEAYGWCAEKGEANTECPEALLVSLTGDIFEAVGGD
                     KLKGAKKWQPYKKE"
     gene            222..479
                     /locus_tag="PXC99_002523"
     CDS             222..479
                     /locus_tag="PXC99_002523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418920.1"
                     /translation="MICHADPEYVKYNYAGLWEKGSDGTFFYNYQQFMPEVEAKESLR
                     EQEPELDDGYNEEEYSEEEYSDENDASDENDNYDETYDDNF"
     gene            617..772
                     /locus_tag="PXC99_002524"
     CDS             617..772
                     /locus_tag="PXC99_002524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418921.1"
                     /translation="MLFKEKGYDEFLTQKIAKGRAELESGKGIPLEQATLLVQSTIEE
                     TAQELDD"
     gene            826..984
                     /locus_tag="PXC99_002525"
     CDS             826..984
                     /locus_tag="PXC99_002525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418922.1"
                     /translation="MTEEYQNFLIEQVKQGLDDIENGRVISLEESRQLCQKTIYETLQ
                     ELQGAVYA"
     gene            977..1294
                     /locus_tag="PXC99_002526"
     CDS             977..1294
                     /locus_tag="PXC99_002526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5418923.1"
                     /translation="MLSRKEVLMTRRASMNLQQIIRNVVEYTYSYESGDKLSAEIHNT
                     LDNLSYFPRIGVIGSVENTRECFCRGYRIIYRETENQVQILAIIHCRQQYPTDYYRSA
                     FKA"
     gene            1415..1645
                     /locus_tag="PXC99_002527"
     CDS             1415..1645
                     /locus_tag="PXC99_002527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418924.1"
                     /translation="MSLLKKAQTFISIFNEVRAKNEAQRQSSNNLNVALKNAAEMRAE
                     MNGFSLKPQKRSTYFADHYGCGIHAVETYDNE"
     gene            complement(1696..1833)
                     /locus_tag="PXC99_002528"
     CDS             complement(1696..1833)
                     /locus_tag="PXC99_002528"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418925.1"
                     /translation="MFYSNNPLIKHKTGLLNLAEELGNISQAVVVVRMFSNLRKNPQI
                     K"
BASE COUNT          657 a          357 c          341 g          559 t
ORIGIN      
        1 aagccacacg tttttgtgtc gtatccatct gtcattcttt cttgtaaggc tgccattttt
       61 tggcaccttt cagcttatct ccgccgactg cttcaaaaat atcgccggtt aaactcacca
      121 ataaggcctc agggcattct gtatttgcct ctcctttttc agcacaccaa ccataagcct
      181 caccttggta aatacgaaca tatgccaccc ctcaattagg gatgatatgc cacgctgatc
      241 ctgaatatgt aaaatacaac tacgccggac tttgggaaaa aggcagcgat ggcacttttt
      301 tctacaatta ccagcaattt atgcctgaag ttgaagctaa agaatcacta agggaacaag
      361 aacctgaact tgatgatgga tataacgaag aggaatatag cgaagaagaa tattccgatg
      421 aaaatgatgc cagcgatgaa aacgataact acgatgaaac ttatgatgat aatttttaaa
      481 tattcccaaa ccacacttcc aaaaaccctg ctcttgacac tctattgctt taagcgtaaa
      541 ttattccaat atttcgcatt taggagaaca taatccctat gcctgaaagc cttgtaataa
      601 gtgaaaggaa cataaaatgc tatttaaaga aaaaggctac gatgagttcc ttactcaaaa
      661 aattgcaaaa ggcagagctg aattagaatc cggaaaaggt attcctcttg agcaagccac
      721 attgttagtt caatcaacta ttgaagaaac tgctcaagaa ctggacgatt aacaatttgt
      781 aacattgcta atatatctat atacaactaa tgataggagt tatccatgac agaagaatac
      841 caaaacttct taatagagca agtaaaacaa ggacttgatg atatagaaaa cggacgtgtt
      901 atttcattag aagaaagccg tcaactgtgt caaaaaacca tatatgaaac cttgcaagag
      961 ctacagggag ccgtgtatgc ttagtcgaaa agaggtgtta atgactcgca gagcaagtat
     1021 gaatttacaa caaatcattc gtaatgttgt ggaatatact tatagctatg aaagtggtga
     1081 taaattatct gcggaaattc ataacacttt ggataatctt tcttattttc cacgaattgg
     1141 tgttataggt tcagtagaaa atactagaga atgcttttgc cgaggttata gaattatata
     1201 tcgagaaaca gaaaatcaag tgcaaatttt agccattatc cattgtcgtc aacaataccc
     1261 aaccgactat tatcgctctg cattcaaagc ataacaggag ctataaaatg gaaataaaaa
     1321 gaaaaatgac cgtagccgaa ttaaaactca aggcaatgct cgccaagcct accatagttc
     1381 aataatatta ggtgcaaaaa acaggagaac cacaatgtct ctacttaaaa aagcacaaac
     1441 gtttatctct atttttaatg aagtgcgagc taaaaatgaa gctcaacgcc agtcttcaaa
     1501 caatttaaat gttgccttga aaaatgctgc tgaaatgaga gctgagatga atgggttctc
     1561 ccttaagcct caaaagcgtt ctacttactt tgctgaccat tatggttgtg gtattcatgc
     1621 agtagaaacc tatgataatg aataaatagc ggtaactatg tcaccgctat tttttatatt
     1681 ttcctaatta tctagctact ttatctgtgg atttttgcgt agattgctga acattcttac
     1741 taccaccact gcttgagaga tattgcccag ttcttctgct aaatttaata aaccggtctt
     1801 gtgtttaatg agagggttgt tagaataaaa catgagagtt tccttttttg tttagattga
     1861 atttggacac tcatattcta aacgggaaac tctcactttt tagagtgaat tgtc
//
LOCUS       DANLVT010000206         1893 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.207, whole genome shotgun sequence.
ACCESSION   DANLVT010000206 DANLVT010000000
VERSION     DANLVT010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1893)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1893)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1893
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.207"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..952
                     /locus_tag="PXC99_002529"
     CDS             <1..952
                     /locus_tag="PXC99_002529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5418926.1"
                     /translation="AFLQSSYGKIQINRNARPTGQYNLNNEELGAIKVPLIDLETQKQ
                     VDKIIKQSNDFVQKSTQSYQEAETLLLENLGLRAFQADSNPVNVKSLKESFLQTGRLD
                     AEYYQTKYEQYWNLIQSQDYVFIRDEYLHITQKPDWTKPMYQYIEIGDVNIGDGSYQT
                     NWIETQELPANAKTQAQTGDILISTVRPYRGAVTIIGENDQDLVVSGAFTVLRRKENS
                     VFNNEVLKVLLRSELYKDWLLQFNVGTSYPVIKDNDILNLPIPKISGEIQEKIAEYIR
                     QSNDLRQQAQNLLAQAKNNVEFEIENNSFNINELEVRGGG"
     gene            976..1710
                     /locus_tag="PXC99_002530"
     CDS             976..1710
                     /locus_tag="PXC99_002530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5418927.1"
                     /translation="MARSSYFARLAEWTLLEHLLVKQPENISVCSFGQSFGTSGRLDA
                     EYYQPKFASLFAQLANFKTMKLGEIVNLQKSVEPGSEAYQTEGIPFVRVSDLSKFGIS
                     QTDKYLHPKDFGNVVRPKKDSILLTKDGTVGIAYRVPQDLNVITSGAIVHLELKTDEV
                     LPDYLALALNSPAVQLQAERDAGGSIIQHWKPSEILDVVIPVLPKNIQQTISDKVQQS
                     FALRVESEVLLEKAKILVEQEIENMR"
BASE COUNT          685 a          294 c          357 g          557 t
ORIGIN      
        1 tgctttttta caaagttctt atggaaaaat ccaaattaac cggaatgcac gcccaacagg
       61 acaatacaat ctgaataatg aggagcttgg tgcgattaaa gtccccttaa ttgatctaga
      121 aacacaaaag caggtagata aaatcattaa gcaaagtaat gattttgtac aaaaatcaac
      181 acaaagttac caagaagctg aaactttatt attagaaaat ctcggtttga gagcttttca
      241 agctgatagc aatcctgtaa atgttaaatc cttaaaagag agtttcttac aaacaggacg
      301 attagatgca gagtattatc aaactaaata tgagcaatac tggaatttaa ttcaatcgca
      361 agattatgtt tttattcgtg atgaatattt acatatcacc caaaaacctg attggacaaa
      421 accgatgtat caatatattg aaattggtga tgttaatatt ggtgatggtt catatcaaac
      481 gaattggata gagacacaag aattacctgc taatgctaaa actcaagccc aaacaggtga
      541 tattttaatt tcaaccgttc gcccttatcg tggtgcagta acaattatcg gtgaaaatga
      601 tcaagattta gttgttagtg gtgcgtttac agtattacgc agaaaggaaa actctgtttt
      661 taataatgaa gttttaaagg tgctattacg gtcagaacta tataaagatt ggttactaca
      721 atttaatgta ggtacgagtt atcctgtaat taaagataac gatattttga atttaccaat
      781 tcctaaaata agtggagaaa tccaagaaaa aattgctgaa tatatccgcc aaagcaacga
      841 tttaaggcag caagcacaaa atttactcgc tcaagctaaa aataatgtag agtttgaaat
      901 tgaaaataat tcatttaata tcaatgagtt agaagtgcgg gggggggggt agatcctgct
      961 aagccttatg gtttattggc gagatcttct tattttgcac gtttagcaga atggacttta
     1021 ttagaacatt tacttgtcaa acagcctgaa aatatttcgg tatgttcatt cggtcaatca
     1081 ttcggtacaa gcggtcgttt agatgcagaa tattaccaac ctaaatttgc aagcttattt
     1141 gcacaattag ccaatttcaa aacgatgaaa ttaggtgaga ttgttaattt acaaaaatcg
     1201 gtagaaccgg gctcggaagc ttatcaaaca gagggaatac cctttgtgcg tgtatcggat
     1261 ttatctaaat tcggcatcag ccaaacagat aaatacttac atccgaaaga ttttggcaat
     1321 gttgtaagac ctaaaaaaga cagtatatta ctgactaaag acggcacagt cggcattgct
     1381 taccgtgttc cgcaagattt gaatgtgatt acatcagggg caattgtgca tctagagctt
     1441 aaaactgacg aagttttacc cgattatttg gcgttagcat tgaattctcc tgctgtacaa
     1501 ttacaagcgg aaagagatgc gggaggctct attatccaac attggaaacc gtctgaaatt
     1561 ttagatgtag tgattccggt attacctaaa aatatccagc aaaccattag cgacaaagta
     1621 caacaaagtt ttgcattgag agtagaaagt gaagttttac tggaaaaagc taaaatactt
     1681 gtagaacaag aaatagaaaa tatgaggtaa taatgcctaa tcataatcaa gatttgaaaa
     1741 aagagtggtt taataaagca aggatagatt accactctcc ttttttaatg ttatggctca
     1801 gttgtaatag ctggtataac ttccattatt ccttaggtaa ggatagaaca catattgata
     1861 gaataaaatc ggataccagt aatcaaaaca aac
//
LOCUS       DANLVT010000207         1879 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.208, whole genome shotgun sequence.
ACCESSION   DANLVT010000207 DANLVT010000000
VERSION     DANLVT010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1879)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1879)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1879
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.208"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            125..706
                     /locus_tag="PXC99_002531"
                     /pseudo
     CDS             125..706
                     /locus_tag="PXC99_002531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252416.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
     gene            707..877
                     /locus_tag="PXC99_002532"
     CDS             707..877
                     /locus_tag="PXC99_002532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HDL5418928.1"
                     /translation="MLKCKQITELVSLSQEQKLTLKQRVNVQVHLMLCSRCRAFSQNC
                     KTVDKLMKEFNS"
     gene            complement(926..1879)
                     /locus_tag="PXC99_002533"
     CDS             complement(926..1879)
                     /locus_tag="PXC99_002533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS1 family transporter"
                     /protein_id="HDL5418929.1"
                     /translation="MFGFDNLPVVYVLFTVIQVGLSINGFKGIKWLENVSCVFLIGIL
                     AYMLYVVNTKFSVEIGERFANIEGTWGMPFWAATTAFLGIYSTMILNASDYSRHVKKG
                     TTPTATGVIYVLSILPVTLFMGLIGLLVTAATGNSDPIEVFATAMDNKFLTVITLLFI
                     AFAQVTTNVLNNIVPPSYILMDSFKMKWSHATILVGILSICVMPWKLVTAESADGLSL
                     FIKIYSAFLGPIFAVMVVDYYILRKRTLNVNDLYNKEGIFKGINWAAIIAIAIGSFCS
                     LIVVDLSWYVSLIPSGLSYYILMRVLKSSEAFRKGTVLEHQ"
BASE COUNT          654 a          353 c          343 g          529 t
ORIGIN      
        1 cccctacgat tagtatgtta ggtttaaaaa tacttcatac caatatcccc taagttgggt
       61 aaaaccttat gaaataggat acaagcggtt agtttctctc aattttttac caaaggatca
      121 cgcaatgagc caaccggctt tacggcaaat ttccccctcg cagctagaag atattcgtct
      181 gcaaatggtg aagtttgcct ttttacagtt aaaaaataac gaacttgccg aagatgtggt
      241 gcaagaggcg tttgtcagcg cttataaata tgccgacagc ttcaaaggtg aaagtgcgtt
      301 aaaaacgtag atttttgcaa ttttaaaaaa caagatcgta gatttagtga aagccaaagg
      361 caaattggtg gcagtatctg agctgatgga agaagacgat cacgatcttg ccgataaatt
      421 gtttaacgaa aatggcggtt gggataaaga tgcttatcaa tctaatgagt ggaagaacac
      481 cgaaagccat acctattccg ctcaattctg gcaagtattt gaattttgcc taaataatct
      541 gccggcaaat caagcaaggg tgtttatgat gcgttcccat ttggaaatgg aaaccgaaga
      601 aatttgcgca gaatgtgaga tttcaccagc aaatgtgcat accttactgt atcgggcaag
      661 attgcagtta caggtctgtt taagtcaaaa atggtttgga ggttaaatgt taaaatgtaa
      721 gcaaattacc gaattagttt ctctgtccca agaacaaaaa ctgacattaa aacaacgtgt
      781 taatgtgcaa gttcatttaa tgctttgttc tcgttgcaga gcctttagcc aaaactgcaa
      841 aaccgtagat aagctaatga aagaatttaa ctcttagcgt aaaagcaagc ggtaaaattt
      901 ttaataaatt ttaccgcttg tcatcttatt gatgttctag cactgtccct ttacggaaag
      961 cttcggaact ttttaacacc ctcatcaaaa tatagtagct caagcctgat ggaattaaac
     1021 tgacatacca agagagatcc accacaatca gtgagcaaaa cgaaccgata gcaatcgcaa
     1081 taattgctgc ccagttaatc cctttgaaaa taccttcttt attatataag tcatttacgt
     1141 ttaaagtacg ttttcttaag atgtagtaat cgacgaccat taccgcaaaa atagggccta
     1201 agaatgccga gtaaatttta ataaacaaag ataatccatc tgctgattca gcagttacca
     1261 atttccaagg cattacacat atagaaagaa tgcccactaa aatggtggca tgcgaccatt
     1321 tcattttaaa tgaatccatt aaaatgtaag atggcggaac aatattattc aacacgtttg
     1381 tcgtaacctg tgcaaaagca atgaataata acgttattac tgttaaaaat ttattatcca
     1441 ttgcagttgc aaatacttca attgggtcac tattgcctgt agctgccgta actaacaacc
     1501 ctattaaacc cataaataag gttacaggga ggattgataa tacataaatc acacctgttg
     1561 ctgttggggt tgttcctttt ttaacgtggc gagaataatc ggaagcattt aaaatcattg
     1621 ttgaataaat acccaagaat gctgtagttg cagcccagaa tggcattccc caagtgcctt
     1681 caatattggc aaagcgctcg cctatttcta cagagaattt tgtattcaca acataaagca
     1741 tataagcaag aataccgatg aggaacacac aagaaacatt ttccaaccat ttaatacctt
     1801 taaaaccatt aatggataag ccaacttgaa taacagtgaa tagcacataa acaacaggca
     1861 agttatcaaa accgaacaa
//
LOCUS       DANLVT010000208         1807 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.209, whole genome shotgun sequence.
ACCESSION   DANLVT010000208 DANLVT010000000
VERSION     DANLVT010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1807)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1807)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1807
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.209"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            517..996
                     /locus_tag="PXC99_002534"
     CDS             517..996
                     /locus_tag="PXC99_002534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HDL5418930.1"
                     /translation="MARVTTELNNTQIKNAKAQTKDYKLMDGKGLFLLVKKNGSKLWR
                     FRYKKPITGKESDLGIGSYPETTLAQARTIREEYRALLAENIDPLEHRQRLEAEALAE
                     IENTFYKVCLKWRDKCESRVKNGELQALTLKKNWRILEKYLLPCRLLYSKHHAKTSY"
     gene            965..1729
                     /locus_tag="PXC99_002535"
     CDS             965..1729
                     /locus_tag="PXC99_002535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005704989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5418931.1"
                     /translation="MPNITPKLVINALEPAKEKGIGDTLKRAIRLLNEVMNFAVNADV
                     IEFNKCQNVGSNFSVAKSEHNPTIHPKELPQFLAALRDYNLSFQTKMLIKWQLLTMTR
                     SREASETLWSEIDLEAKTWTISAERMKMKRPHVIPLSRQAVEILERMRKITGNSPFVF
                     QSEMKPRQPMNSQTANRAIGLLGYAGTLTAHGMRSIASTYLNEQLVNYDVVEACLAHV
                     IKDQTRKAYNRSDYLDQRVDVMQQWADYVESCSTGI"
BASE COUNT          615 a          345 c          356 g          491 t
ORIGIN      
        1 tccctatttt ccctaaacat tttacccaag cacagaaaaa atatttttat gctgatgtat
       61 gaaaaatgaa atcttgctga agggctgaat agttgctgat aatagaatag aaatgcaact
      121 aggaaagaca aaccaaccta gccgcacaaa tgaacatttt ataaacgaaa ataaatagct
      181 tttatgtaaa tgatccctaa aatgatccct atttttgtag agtttatttt atctctttat
      241 aaatcaataa gttataagcg agttcagagg aggctgggac caacttaaat tttccactct
      301 tatttcttca ttcgcattct tacgcaaaac cattgatgat actggcttta gagcaatttt
      361 aaattatttc ttcattcgta ttctttcgtg ttcttgcgtt tacatcccct tattttaagg
      421 gtatatttga gggtataacg taaaagggta tgaaacccat acccttaaat cccttatgat
      481 tctgataaag cacaatgcga ttttaggtaa atttttatgg ctagagttac cacagaatta
      541 aataacactc aaatcaaaaa cgcaaaggct caaaccaaag actacaagct aatggacggc
      601 aaggggctgt ttttgctggt taagaaaaac ggctcgaagt tatggcggtt taggtataaa
      661 aagccgatta ccggcaaaga gagcgattta ggcataggca gttaccccga aactacccta
      721 gcccaagcaa gaacgattag agaagaatat agggcattac tagcggaaaa tatcgaccca
      781 ctcgaacacc gccaaagatt agaggctgaa gcgttagccg aaatagaaaa caccttttat
      841 aaagtctgct tgaaatggcg tgataaatgc gaaagccgtg taaaaaatgg cgaacttcaa
      901 gccttaacgc tgaagaagaa ttggcgaatc cttgaaaagt atcttttgcc ttgccgacta
      961 ctctattcca aacatcacgc caaaactagt tattaatgct ttagagcctg ctaaagaaaa
     1021 aggcataggc gacaccctta aacgagcaat taggctactt aatgaagtga tgaattttgc
     1081 ggtaaatgcg gacgttatcg agtttaacaa atgccaaaat gtaggctcaa attttagcgt
     1141 agcgaaatct gaacataacc caacgataca cccaaaagag ctacctcaat ttttagctgc
     1201 attgcgtgat tacaacctat catttcaaac taagatgttg attaaatggc aactattaac
     1261 aatgacacgc tcacgagagg caagcgaaac gttgtggagt gaaattgatt tagaggcgaa
     1321 aacgtggacc atttcagccg aaagaatgaa gatgaaacgc cctcacgtta tccctctttc
     1381 acggcaagcg gtcgaaattt tagaaagaat gcgaaaaatc acagggaata gcccatttgt
     1441 ttttcaaagc gaaatgaaac cacgccaacc gatgaacagc caaaccgcca acagagccat
     1501 aggcttatta ggctatgccg gcactctaac ggctcacggt atgcggtcta ttgcctcaac
     1561 ctatttgaat gagcagttag tcaattatga tgtagtagag gcttgtttag ctcacgttat
     1621 caaagaccaa acccgaaagg cttataaccg ttctgattat ttagatcagc gtgtagatgt
     1681 aatgcagcaa tgggcggatt atgtagaaag ctgctcaacg gggatttagt aaatttttgg
     1741 cggaatttga ccgcttgttt aattagaggt gtacaaatat gaataacctt tctgagttta
     1801 aattacg
//
LOCUS       DANLVT010000209         1666 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.210, whole genome shotgun sequence.
ACCESSION   DANLVT010000209 DANLVT010000000
VERSION     DANLVT010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1666)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1666)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1666
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.210"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..676
                     /locus_tag="PXC99_002536"
     CDS             <1..676
                     /locus_tag="PXC99_002536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418932.1"
                     /translation="EPRNPLIYHRHSWHLEFDGSVLYIADPTLFKYESINLAWYVGDK
                     DTDLYPYLAEFVTSVATHLNVETDHIVTYGSSGGGFAALQLGARIGNGVVTVCINPQT
                     NIMKYVPSHRNAFLNACFDFNAEEYDSLSNQEKFNALVLLKENTSKILYIQNTQDEFH
                     HKWHFLPFLELKGIDLSEIEKTHWREQQSKDVKVILYSHESGHAAEPKEMIPEILSAV
                     DQLIAS"
     gene            678..>1666
                     /locus_tag="PXC99_002537"
     CDS             678..>1666
                     /locus_tag="PXC99_002537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL5418933.1"
                     /translation="MLFYLVSDSLTRLSLSNESLVDLGRITSIGNYPFLHNAKNAKFL
                     MVESAWQGYKNRWKYKIASYPDNPERTNEKLVRLVEKAKDKGIPTVFWNKEDSVHFDR
                     FIDSAKHFDHIFTVDQNAIARYREVVPATTTVNVGMFPVQPKIHNFQGFNFKHLAANF
                     VGSYSHHIHNKRRERQDMLFGAALKAGLPVTIFDRNSDRKSENYRYPKNSFNLNVQPN
                     VSYTETANIYRDYLVSLNINTVEDSPTMFSRRVVEILACGGILVSTPSMAIDNIFKEY
                     CHIVQSEDEAIELFQRLKRGASRDDLNKAIAGSEFVLSNFTWEHFLSQIQKVV"
BASE COUNT          545 a          272 c          310 g          539 t
ORIGIN      
        1 agaacccaga aatcccttaa tttatcatag acatagttgg catctagaat ttgatggctc
       61 agttctatat atcgcagatc caacattatt taaatatgaa tcaattaatt tggcttggta
      121 tgttggagat aaagatactg atttatatcc atacttagct gaatttgtaa cttctgttgc
      181 tacacatttg aatgttgaga cagaccatat tgttacttat ggttcaagtg gtggtggatt
      241 tgctgcatta cagttgggag caagaattgg aaacggtgta gttaccgttt gtattaatcc
      301 acaaaccaac atcatgaaat atgtaccaag tcatcgtaat gcctttttaa acgcttgctt
      361 tgactttaat gcggaagagt acgatagtct ttctaatcaa gagaaattta atgctttagt
      421 attacttaag gaaaatacat caaagatttt gtatattcaa aatactcagg atgaatttca
      481 tcataaatgg catttcctcc cattcctaga gttaaagggg atagatctat cggaaataga
      541 aaagacccat tggagagaac aacagagcaa agatgtaaaa gttattttgt attctcatga
      601 atcaggtcat gcagctgaac ctaaggaaat gattcccgag atattatccg ctgttgatca
      661 actgatagct agctaaaatg ctgttttatt tggtatctga ttctttaact aggctttcat
      721 tatcaaatga aagcctagtt gatcttggaa gaataacatc tataggaaat tatcctttct
      781 tgcataatgc aaagaatgct aaatttctta tggtcgaatc cgcctggcaa ggctacaaaa
      841 accgttggaa atataaaatt gcctcttatc ctgataatcc tgaacgaacc aatgaaaagt
      901 tggttcgttt agtagaaaaa gcgaaggata aaggcattcc aacggtcttt tggaacaaag
      961 aagattctgt gcattttgat cgatttattg attcggcgaa gcattttgat catattttta
     1021 ccgtagatca aaatgccatt gctcgttata gggaagtagt gcctgcgaca acaaccgtca
     1081 atgtcggaat gttccctgtt cagcccaaaa tccataactt tcaaggattt aattttaaac
     1141 accttgccgc aaattttgta gggagttaca gtcatcatat ccacaataag cgtagagaaa
     1201 gacaggatat gttgtttggt gcagcactta aagcaggtct tccggtaacc atctttgata
     1261 gaaactctga tagaaaatcg gaaaattatc gttacccaaa aaatagcttt aatttaaatg
     1321 ttcaacctaa tgttagttat actgaaactg ctaatattta tcgtgattat cttgtttctt
     1381 tgaatattaa tactgtcgaa gattccccta cgatgttttc tcgcagagtc gttgaaatat
     1441 tagcttgtgg aggaatatta gtctctacac caagtatggc tatcgacaat atatttaaag
     1501 aatattgtca tatcgtacaa agtgaagatg aggctataga attattccaa cgtttaaaac
     1561 gaggtgcttc tcgtgatgat ttgaataaag cgattgcagg ctctgaattt gtattgagta
     1621 actttacttg ggaacatttc ttatcccaaa tacagaaagt tgtata
//
LOCUS       DANLVT010000210         1645 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.211, whole genome shotgun sequence.
ACCESSION   DANLVT010000210 DANLVT010000000
VERSION     DANLVT010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1645)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1645)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1645
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.211"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            36..989
                     /gene="msrP"
                     /locus_tag="PXC99_002538"
     CDS             36..989
                     /gene="msrP"
                     /locus_tag="PXC99_002538"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HDL5418934.1"
                     /translation="MKKLTIQDVTPETIFYQRRKIITALGLGIAASALPKVSMAETQR
                     HLQSLQFKPDPNKGLELTPENKVIGYNNFYEFGVDKSAPAKNAANFKTDPWTLEIGGE
                     VENPFSLNHQQLLNTFPLEERIYRFRCVEAWSMVVPWIGFELARLIEMAKPTSKAKYV
                     VFHTLYDPAQMPGQKNRLLGGGIDYPYVEALRLDEALNSLTLLSVGLYGKTLPPQNGA
                     PIRLVVPWKYGFKSIKSIVKITFAEKRPLTTWESLAPNEYGFYANVNPNVDHPRWSQA
                     SERVIGAGGLLSVKRQPTLMFNGYENEVANLYRGLDLKVNY"
     gene            989..1573
                     /locus_tag="PXC99_002539"
     CDS             989..1573
                     /locus_tag="PXC99_002539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfoxide reductase heme-binding subunit YedZ"
                     /protein_id="HDL5418935.1"
                     /translation="MLTWLRILIHLGCLLPLVWVAQLLYTGNETILGADPIKELEHFL
                     GYGAIVIFCIMFLLGIALQYLKKNQYQILRRPLGLWAFVWAALHISSYLLLELSLDVK
                     LFFSELAGRPYLILGAAAFFILSIMAITSLPMLKRKLGTRWGTIHQWAYPALVLAMVH
                     YYWSVKSVTFDPIIIGVLVLFIVAHKIQAKFAKK"
BASE COUNT          515 a          318 c          329 g          483 t
ORIGIN      
        1 ataataacaa caattcataa aaaaaggata gttcgatgaa aaaattaaca attcaagatg
       61 ttacacccga aactattttc taccaacgcc gtaaaattat taccgcgtta ggtttaggta
      121 ttgcagcttc tgcattgcct aaagtaagta tggcagaaac acaaagacac ttgcaatcac
      181 tacagtttaa accggatcca aataaagggc ttgaactcac tccggaaaac aaagtaatag
      241 gctataacaa tttctatgag tttggcgtgg ataaaagtgc accagcaaaa aatgcggcaa
      301 acttcaaaac cgatccttgg acattggaaa ttggcggaga agttgaaaat ccgtttagct
      361 taaatcatca acaattgctt aatacgtttc cactagaaga acgcatttac cgttttcgct
      421 gtgttgaagc gtggtcaatg gttgtgccgt ggatcggctt tgagttagct cgcttaattg
      481 agatggcaaa accaaccagt aaagccaaat atgtggtctt tcacacttta tatgatcctg
      541 cacaaatgcc ggggcaaaaa aatcgcttgc taggcggtgg gattgattat ccttatgtag
      601 aagctttacg cttagatgaa gccttaaatt cattaacact actatccgtc ggtttatacg
      661 gtaaaaccct gccaccgcaa aacggtgctc ctattcgctt agtcgtgcct tggaaatatg
      721 gctttaaaag tattaagtcg attgtgaaaa tcacctttgc tgaaaaacgc ccactcacta
      781 cttgggaaag tcttgctcca aatgaatatg gcttttatgc taatgtgaat ccaaatgttg
      841 atcatccacg ttggtcgcaa gcatctgaac gagtaattgg tgcaggcggg ttattatccg
      901 tcaaacgcca accaacacta atgtttaatg gctacgaaaa tgaagtggca aatttatacc
      961 gtggcttaga tttaaaggtg aactactaat gctaacctgg ttacgtatac tcattcatct
     1021 tggctgttta ttaccgctag tttgggtagc acagctatta tatacgggta atgaaacaat
     1081 attaggtgcc gatccgatta aagaactgga gcattttctc ggttatggtg caatcgtcat
     1141 tttttgtata atgtttctac ttggtattgc cctacaatac ctaaagaaaa accagtatca
     1201 aattttacgc cgtccattgg gcttatgggc gtttgtatgg gcagctctac atatttcaag
     1261 ctatctattg ttagaattaa gccttgatgt aaaattattt tttagcgagc ttgccggtcg
     1321 cccatatttg attttaggag cagctgcttt tttcattcta agcataatgg caataacttc
     1381 gctgcctatg ctaaaacgaa aattaggaac acgctggggg acgattcacc agtgggctta
     1441 tcctgcatta gtattggcga tggtacatta ttattggtcg gtaaagagcg taacattcga
     1501 tccaattatc atcggagtct tagtgctgtt tattgttgct cataaaatac aggctaaatt
     1561 tgcaaaaaaa tagcaaaatc acaccgcttg cagcagtcaa actacataca aaaaataagg
     1621 ggctgtccta gataacgact aaaac
//
LOCUS       DANLVT010000211         1587 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.212, whole genome shotgun sequence.
ACCESSION   DANLVT010000211 DANLVT010000000
VERSION     DANLVT010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1587)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1587)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1587
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.212"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..1539
                     /locus_tag="PXC99_002540"
     CDS             <1..1539
                     /locus_tag="PXC99_002540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HDL5418936.1"
                     /translation="KWVLGINPSSILEPSCGDGRFIQALFNNNSEKEKNITCFELIDS
                     EADKSKYLLKSLGFNNFSVYSSDFLRWSVDNFKADQIEFEGIIGNPPFIRYQYLNEEF
                     QESAKNVFDLLNFKFTKHTNSWVSFLISSLSFLKEGGRLGMIIPSEILNVIHAQSLRD
                     FISQGLHKVLIINPKNIWFENTLQGALIILIEKVDNESKKGISILNVEDDDFINIDPN
                     KLFVKSKYIDFKDLPDKWVGANLTEEELSLINKVKNHRSVYKFSDIATVEVGIVTGAN
                     DFFLVNDHIVSKYKLDRFVYPMFGKSQHCKGIIYDNEQHFENKEKNLPTNFIYLEDNE
                     SNLPLLVQTYIKEGEDAEYHKRYKCKIRKPWYKVPSVYSTNIGMLKRSHEAPKLILNK
                     LGAYTTDTAYRIKSNKFQDEILVCCFLNPLTMILSELNGRFYGGGVLELVPSEIRNLY
                     IPIIENIDFNIEELNEEVKAGNIENVIRNNGEKILTNLGFSQEDNAMLMSIWKKLKNN
                     RLRR"
BASE COUNT          596 a          178 c          280 g          533 t
ORIGIN      
        1 aaatgggttt tgggaattaa tccatctagc atattagagc ctagttgtgg tgatggtcgg
       61 tttattcagg ctctatttaa taataatagc gaaaaagaaa agaatataac ttgctttgaa
      121 ctaattgatt cagaagcaga taaatcaaaa tatctattaa agtcattggg atttaataat
      181 ttttcagttt acagtagtga ttttttaaga tggtcagttg ataactttaa agctgatcaa
      241 attgagtttg aggggataat tggaaacccc cctttcattc gctatcagta tttaaatgag
      301 gaatttcaag aaagcgcgaa gaatgtcttt gatttattaa attttaaatt cacaaaacat
      361 actaactcgt gggtttcatt tttaatctct tctttatcgt ttctaaaaga aggcggtaga
      421 ttaggtatga ttattccttc tgaaatatta aatgtaatac atgctcagtc attaagggat
      481 tttatttctc aaggattaca taaagttcta attatcaatc ctaaaaatat atggtttgag
      541 aatactttac aaggtgcatt aattattctt attgaaaaag tagataatga aagcaaaaaa
      601 ggtatttcca ttttaaatgt agaagatgat gactttataa atatagatcc aaataaactg
      661 tttgttaaat ctaagtatat tgatttcaaa gatcttcctg ataaatgggt tggggctaat
      721 ttaactgaag aagaattgag tcttattaat aaggtaaaaa atcatagatc tgtttataaa
      781 ttctctgata tagcaacggt ggaagttggt atagttacgg gagccaatga ttttttctta
      841 gttaatgatc atattgttag caagtataag ttagatcggt ttgtttatcc tatgttcgga
      901 aaaagtcagc attgcaaagg aatcatatac gataatgaac aacattttga aaataaagaa
      961 aaaaatttgc caactaactt tatttattta gaagataatg agagtaatct tcctttactt
     1021 gtacaaactt atataaaaga aggtgaggat gcggagtatc acaaaagata taaatgcaaa
     1081 ataagaaaac catggtataa agttccatcg gtttattcaa ctaacatagg aatgctgaaa
     1141 agaagtcatg aagcaccaaa actaatattg aataaattgg gggcttatac taccgatact
     1201 gcgtatcgta taaagtcaaa taaatttcaa gatgagattc ttgtgtgctg tttcctaaat
     1261 ccattaacta tgattttatc tgagttaaat ggaaggtttt atggtggagg cgtattagaa
     1321 ttagttcctt ctgaaattag aaatctatat attccaataa ttgagaatat tgattttaat
     1381 atagaagaat taaatgaaga agttaaagct ggaaatatag agaatgtcat aagaaacaat
     1441 ggtgaaaaaa ttttaacaaa tttaggcttt tctcaagaag ataatgccat gttaatgagt
     1501 atatggaaaa agctaaaaaa taacaggtta agaagatagc ttgaaaaggt tgtgtggttt
     1561 atacatcaca caacctttta gaattaa
//
LOCUS       DANLVT010000212         1549 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.213, whole genome shotgun sequence.
ACCESSION   DANLVT010000212 DANLVT010000000
VERSION     DANLVT010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1549)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.213"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..259
                     /locus_tag="PXC99_002541"
     CDS             <1..259
                     /locus_tag="PXC99_002541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5418937.1"
                     /translation="TYRSYDALDVSEFHHERINHSELFAEKQNHINGIENFWNQAKRV
                     LRKYNGINRKNFPLFLKECEFRFNFGTPKEQLKTLRKWCEI"
     gene            398..1468
                     /locus_tag="PXC99_002542"
     CDS             398..1468
                     /locus_tag="PXC99_002542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418938.1"
                     /translation="MKFNKKLILTFAATLVLSACGGSGSGGSSSTPNHPKPVLVPKTQ
                     NNLQAQNVPQAQNASQAQNAPQAQNAPQAQNAPQVENAPQAQNAPQVENAPQAEVTPP
                     VPQPQSQKIDGSFDKIGSVKLNKEAQTLELSRFTLVDKLGTPPKFDKVSGKKIIEEKD
                     FLVLNLSDINAEQLSGDFLIRRSDDLFYGYYHDTNGKNLVDAADKFSQYFVVYDEKRV
                     NDNISDKLTATYRKKEGFVYGSNPHTKEFAARISKLGDVEIKFENGQAQGSIKDEKDG
                     NAEIFTIKGDTKQLEITPTESNRIIIAILDQNQKSYTPGMEKAIMETKFIDSKAGNSD
                     QKYLIGEAKSDNWQAIMVSEKK"
BASE COUNT          570 a          283 c          283 g          413 t
ORIGIN      
        1 tacctatcgt agctatgatg cccttgatgt gagcgaattt catcacgagc gaatcaacca
       61 ttccgaactg tttgcggaga aacaaaacca tatcaatggc attgaaaatt tttggaatca
      121 agcgaagcga gtactccgaa aatataacgg aattaaccga aaaaatttcc ctttattctt
      181 gaaggaatgt gaatttcggt ttaactttgg tacaccaaaa gaacagctca aaacgttgcg
      241 aaaatggtgt gagatttagg gctaatctac tacagcccca aaaattttca taagggaaac
      301 gtttacgtaa aactcctcag accactcatt cttattttat ataaaaaatg tgatagactt
      361 ctcgcagttt cgttttatat atttaaggaa taactaagtg aaattcaata aaaaattaat
      421 tttaacattt gctgcaacct tagttttaag tgcttgcgga ggaagcggta gcggaggttc
      481 gtcttcaaca ccgaatcacc ccaaaccagt actagtacca aaaacacaaa ataatcttca
      541 agcacaaaat gttcctcagg cacaaaatgc ctctcaggca caaaatgccc ctcaggcaca
      601 aaatgctcct caggcacaaa atgctcctca ggtggaaaat gctcctcagg cacaaaatgc
      661 tcctcaggta gaaaatgctc ctcaagcaga ggttactccg cctgtaccac agccacaatc
      721 acaaaaaatt gacggttctt ttgataaaat tggttcagta aaactcaata aagaggctca
      781 aactcttgag cttagtagat tcactttggt ggataaatta ggcacaccac cgaagtttga
      841 taaagtaagc ggtaaaaaaa ttattgaaga aaaagatttt ctcgtattaa atttgtctga
      901 tattaatgct gaacaactct ctggcgattt tcttattcgc cgtagcgatg atctattcta
      961 tggctactat cacgatacaa atggcaaaaa tcttgtcgat gctgccgata aattcagtca
     1021 atattttgtc gtgtatgatg agaaacgggt aaatgataat atctctgata aattaacagc
     1081 aacttaccgt aaaaaagaag gctttgtata tggttcaaat ccacatacta aagaatttgc
     1141 cgcacggatc agcaaattgg gggatgtaga aattaaattt gaaaatggtc aagctcaagg
     1201 aagtataaaa gacgaaaaag atggaaatgc tgagatcttt actattaaag gtgatacaaa
     1261 acagttagag attaccccaa cggaaagtaa ccgaatcatt atagcaattt tagaccaaaa
     1321 tcaaaaaagc tatactccag gaatggaaaa agcaattatg gaaactaagt ttattgattc
     1381 aaaggctggt aattccgacc aaaaatactt aatcggtgaa gcaaaaagcg ataactggca
     1441 agcaataatg gttagcgaga aaaaataaag ttatcttttg ctaaaaactg aaataaaaag
     1501 gctgagtccg ggtaatatcg gcctcagtct tttaaattgt agaaaatca
//
LOCUS       DANLVT010000213         1544 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.214, whole genome shotgun sequence.
ACCESSION   DANLVT010000213 DANLVT010000000
VERSION     DANLVT010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1544)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1544)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1544
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.214"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(214..1449)
                     /locus_tag="PXC99_002543"
     CDS             complement(214..1449)
                     /locus_tag="PXC99_002543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="paraquat-inducible protein A"
                     /protein_id="HDL5418939.1"
                     /translation="MKINRIILQSCSECGQQVRVPLTSNGNAVCPVCHNILRKSNTWS
                     LHRSAFLALAILILLPFALTFPLMSIDLLGIKINATVWDGIWKMATEGYPYTAFMVLV
                     CAVIMPIAFVLLILTIQLQRIIRQRPRYTLIFLTKIKEWVMLDVYLVALAVAAFKIRD
                     YADLQFDINLIAFVLVTLLNTLLFIKTEPKQAWERFYPEYHALPFDHPSNPTLCPTCE
                     YCFDETILDLKGRQRCPRCESNLSISDNVKIQRVWACLIAGTIMMIPANIFPISTTEL
                     AGQVSADSLMSGVLLFMEMGSYTVAAIVFIASIAVPVSKITIIFYLLLAIHYKWKHPI
                     HWQMKLLHYVHFVGRWSMLDLFVLSLMMSLLERGQILSFSVGEAAFYFGAAVFLTMFA
                     SANLDSRMLWKIHTVQKTS"
BASE COUNT          466 a          296 c          319 g          463 t
ORIGIN      
        1 tgtcacgtat ttggaaatgt tctttagtac tgcaatggat accctaattg cctcaagtaa
       61 atatagtaaa gactatttta tatttgctaa tttctttctg gctatcggtg ctacattatc
      121 ggctctttct tactcaatag ggattgagat tttgggttac gtactacttt tcttactttg
      181 catgttatgt attatttatc ggaaaatctt tatttaggat gttttctgga cagtatgaat
      241 cttccacaac attctggaat ctaaatttgc agaggcaaac atcgttaaga atacggctgc
      301 tccaaaatag aaagcggctt cccctaccga gaaactgaga atctgccctc gttcgagtag
      361 cgacatcatc aatgataaca cgaataaatc cagcattgac cagcgtccga caaaatggac
      421 gtagtgtagt agtttcattt gccaatgaat cgggtgtttc cacttgtaat gaattgccag
      481 caagagataa aaaataatgg taattttgct caccggcacc gcaatactag cgataaacac
      541 aatcgctgcc acggtgtagc tacccatttc cataaacaga agcacgccgg acattaatga
      601 atctgccgaa acctgacctg ccagttcagt tgtcgaaatc gggaaaatat ttgccggaat
      661 catcataata gtccctgcaa ttaagcaagc ccaaacccgt tgtattttta cgttgtcgga
      721 aatagataaa ttgctttcac aacgagggca gcgttgccgt ccttttaagt ctaaaatagt
      781 ttcatcaaag caatattcac aggtcgggca aagtgttgga ttgcttgggt gatcaaacgg
      841 caaggcgtga tattctgggt aaaaacgttc ccatgcttgt tttggctcgg ttttaataaa
      901 aagtagggtg tttaagagtg ttaccaacac aaaggcgatt aagttgatat cgaattgtag
      961 atcggcataa tctcgaattt taaaagcggc aaccgcaaga gcaactaaat agacatcaag
     1021 cattacccat tcttttattt tagttaagaa aatcagcgtg taacgggggc gttggcgaat
     1081 aatacgttgt agctgaatgg ttaaaattag caatacaaat gcaatcggca ttattaccgc
     1141 gcagactagc accataaaag cggtgtaagg gtagccctcc gttgccatct tccaaatacc
     1201 gtcccatacg gtagcattaa ttttgatgcc gagtaagtca atgctcatca agggaaaagt
     1261 aagtgcgaag ggaagcaaaa ttaaaatggc taatgccaaa aaagcactac ggtgcaagct
     1321 ccaagtattg cttttgcgta atatattatg gcagaccggg caaacggcat tgccatttga
     1381 cgtgagcggg actcgcactt gttgcccaca ttcgctacag ctttgtaaaa tgattctgtt
     1441 tattttcatt ttttgatctt ctattaaatt aggtggttat tttctacttt atcgtagaga
     1501 ttgcaagtgg ttaaatttgg caaaattttt gcaagttgca tttt
//
LOCUS       DANLVT010000214         1482 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.215, whole genome shotgun sequence.
ACCESSION   DANLVT010000214 DANLVT010000000
VERSION     DANLVT010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1482)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1482)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1482
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.215"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..935)
                     /locus_tag="PXC99_002544"
     CDS             complement(<1..935)
                     /locus_tag="PXC99_002544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015483985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5418940.1"
                     /translation="MKQVMNPINTPTQRFKDGNPATGEYGTIVTAEFLNNVQDSVINT
                     QQELHSVLAEAGIEANDEQVNQVAKAIKKIAGDATRDNFNALANPDGYKHIGRCKSVA
                     ELRTIRPTEHGQRILVDAYYEDGTTGGGEFVADLQDLVTPDDGGVCFVVNNNGGRWKR
                     VDLSHLTLFDFWAVGDGVTNDESAFVNAMRYSQFFIENGTFRINNAVNSVRDNVKILG
                     NKTGKLVLGAGIQQAGAEVFNINHSNYFISGFCIETPNKAIGIRFKSLDDAGVKNLHI
                     DNVVFNGTFYGVRAGESIQADTNYPTDNVIVQNCQS"
     gene            complement(932..>1482)
                     /locus_tag="PXC99_002545"
     CDS             complement(932..>1482)
                     /locus_tag="PXC99_002545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2313 domain-containing protein"
                     /protein_id="HDL5418941.1"
                     /translation="LLPPVSYDPNGRWLALSLEVEGRELDRIDARAKTLIDAVDVSTG
                     IFIDDWERVCGLTANSSLPLETRIERVIAKLNQLGGLSIGYITQVAKELGYCIKISEP
                     QPFIAGLSRAGDMLWHKDIMWTFFVDICNPTDDYKRFRASVSMAGDALMGRYKDPILE
                     SLLEEVKPAFSRVWVRYLGDIE"
BASE COUNT          424 a          373 c          260 g          425 t
ORIGIN      
        1 gattggcagt tttgtacaat cacattatca gttgggtaat tagtatccgc ctgaatactt
       61 tcacctgccc tgaccccgta gaaggtgcca ttaaacacaa cattgtcaat atggagattt
      121 ttaacaccag catcatccaa agacttaaat cgaataccaa ttgctttgtt cggtgtttca
      181 atacaaaaac ccgagataaa ataattgctg tgattaatat taaaaacttc ggcccctgct
      241 tgctggatac ctgcacctaa tactaatttg ccggtcttat tgcccaaaat tttcacatta
      301 tcgcgaacag aattaacggc attgttgata cgaaatgtac cgttttcgat aaaaaattga
      361 gaatatctca tagcatttac aaatgctgat tcatcatttg ttaccccgtc accgacggcc
      421 caaaaatcaa ataatgtaag atgtgaaagg tcaacacgct tccaccgccc cccattatta
      481 ttcacaacaa aacaaacccc accatcatca ggcgtaacta aatcctgcaa atcagccaca
      541 aactccccac cgcctgttgt gccgtcctca tagtaagcat ccaccaaaat acgctgaccg
      601 tgttccgttg ggcggatagt acgtaactcc gcaaccgatt tgcagcgacc gatgtgtttg
      661 taaccatcag ggttggctaa tgcgttaaaa ttatcacgag tagcatcgcc cgcaattttc
      721 ttgattgctt tagccacctg attaacttgt tcgtcatttg cttcgattcc tgcttcagca
      781 agtacactgt gcaattcttg ttgggtgtta atgaccgaat cttggacgtt attcaaaaat
      841 tcagcagtca caatcgtgcc atattcacca gtggcagggt tgccatcttt aaaacgctgt
      901 gttggggtat taatcggatt catcacttgt ttcattcaat atctcctaaa tatcttaccc
      961 acacacggct aaatgcaggt tttacctctt caagtagact ttctaaaatt gggtctttgt
     1021 atcgtcccat taacgcatcg ccagccattg acacacttgc tctaaaacgc ttgtaatcat
     1081 ctgtggggtt gcaaatatcc acaaaaaatg tccacataat gtctttatgc cataacatat
     1141 ccccagctcg gcttagccca gcaataaagg gttgtggctc actaattttg atgcaatatc
     1201 caagctcttt ggccacttga gtgatatagc ctatcgacaa tccacccaac tgattcagct
     1261 ttgcaatcac acgctcaatt cgggtttcaa gcggtagtga gctattcgcc gttaagccac
     1321 aaacccgctc ccaatcatca ataaaaatgc ctgttgatac atcaacggca tcgattaaag
     1381 tcttggctct cgcatcaatg cggtctagct ctctcccctc aacttcaagg gataacgcta
     1441 gccatctgcc gtttgggtca tacgatacag gcggtaataa ac
//
LOCUS       DANLVT010000215         1392 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.216, whole genome shotgun sequence.
ACCESSION   DANLVT010000215 DANLVT010000000
VERSION     DANLVT010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1392)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1392)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1392
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.216"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..534)
                     /locus_tag="PXC99_002546"
     CDS             complement(<1..534)
                     /locus_tag="PXC99_002546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418942.1"
                     /translation="MSALINLFYLYDPWFFHFLRMSFVVGLVACGYLVFQIIKGKSNG
                     IIIPKDSLIAIIALIGFSIIPLLINSTKEIGVLAMYVKMLILFVFGIAIYNVFYHNQQ
                     GKTLFVRDLKIGIAIQWICGVTALLGLPFMVDFLLSSNAMMPRFFGSEQEYRLYNITS
                     SAFFQLSIFYLMLLHFLL"
     gene            complement(545..1330)
                     /locus_tag="PXC99_002547"
     CDS             complement(545..1330)
                     /locus_tag="PXC99_002547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HDL5418943.1"
                     /translation="MKKYLISLEKDVKRRELFFSQPNTEDFEVFSAINTMSSDWEALN
                     NHFDLALFEQRYGRKTTKGEVGCTLSHLAVYQKIAEDSTIAEDDYCLVCEDDALFADD
                     FQKHLDALLAQNLKVDIILVGQSKIPTFNDSELELNYPSTFGFLQKNIPNSQYKYAYS
                     YLNYFAGTVAYLIKKSTACQFLAQCAGKNPYWLADDFILFEKNFKFDVLIVRPLMAIE
                     NPVLISNLEDLRGSLNNNLFKKAVKYPLKKLLAIKRNFTQRNS"
BASE COUNT          504 a          253 c          204 g          431 t
ORIGIN      
        1 caataaaaaa tgtaatagca ttaaataaaa aatgcttaat tggaaaaagg cggaagaagt
       61 gatgttatat aaacggtatt cttgttccga accaaaaaaa cgtggcatca ttgcattgct
      121 ggataataaa aaatccacca taaacggcaa acctaataag gctgtcacac cacaaatcca
      181 ttgaatagca atgccgattt ttaaatcacg aacgaataaa gttttacctt gttggttatg
      241 ataaaaaaca ttataaatcg caatcccgaa cacaaacaaa atcagcattt tgacatacat
      301 tgccagcaca ccaatttctt ttgtactgtt aatcaataat ggaataatgc taaagccgat
      361 taatgcaata attgcaatca ggctatcttt aggaataata atgccattcg atttgccctt
      421 gattatttgg aaaaccaaat agccacaagc aacaagcccg actacaaacg acattcttaa
      481 aaaatggaaa aaccacggat cgtaaagata aaataagtta atgagtgctg acatttcaga
      541 cctattatga atttcgctga gtaaaattac gtttaattgc cagtaatttt ttaagtggat
      601 attttacggc ttttttaaat aaattattat ttaatgaacc acgtaaatct tccaaattac
      661 taattagaac aggattttct atcgccatta acgggcggac aattaacaca tcaaatttga
      721 aattcttttc aaataaaata aaatcatcgg caagccagta tggatttttt ccggcacatt
      781 gtgctaaaaa ctgacaagcg gtcgattttt taattaaata tgcaaccgta ccagcaaaat
      841 aattcaggta agaataagca tatttatatt ggctattcgg aatatttttt tgcaaaaagc
      901 caaaggttga tgggtaatta agctctaatt cgctatcgtt aaaagttgga attttcgact
      961 gcccaactaa aataatatcg acttttaaat tttgtgctaa taaagcatca agatgttttt
     1021 ggaaatcatc ggcaaataag gcatcatctt cacagactag gcagtaatca tcttccgcaa
     1081 tagtgctatc ttcggcaatt ttttggtaaa cggctaaatg gcttaaagta caacctactt
     1141 cgcccttagt ggttttacgc ccatatcgct gttcaaacag agccaaatca aaatggttat
     1201 ttaatgcctc ccaatcacta ctcattgtat taatggcact gaacacctca aaatcttccg
     1261 tattaggctg gctaaaaaat agctctcgtc tttttacatc tttttctaat gaaattaaat
     1321 atttcttcat tttattctct aatatcaaca atctgaacgc ctaatttttc aagcaattca
     1381 tagctctcaa ta
//
LOCUS       DANLVT010000216         1358 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.217, whole genome shotgun sequence.
ACCESSION   DANLVT010000216 DANLVT010000000
VERSION     DANLVT010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1358)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1358)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1358
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.217"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>1358
                     /locus_tag="PXC99_002548"
     CDS             <1..>1358
                     /locus_tag="PXC99_002548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418944.1"
                     /translation="EQGKKLYSRVGYDKGVWEALSVLLPERFDFEVFEVIDYSKEWSW
                     FEIIVENLFWRQPEKINMQKLHQFFKNSPYFNQATWINILYQLATEINHPLNIKYLHN
                     KLYSFSLADRDEIWTAFIALESDQCPAIERLLTWCQKSSGQENIEPEALLLGAIAVSW
                     LFTSTDKRSRNGYINALAHLLWNRLEIALALFKEFIEVNDPYVMEGILSAIHGAVAYS
                     ENSSGLKALALEIDNQIFNQPETEEIYPNVLVRDYARHIIEYSLQKDEYSSDDIEIIR
                     ERITPPYRSSFPQNLPTNEEIDKKYHSDGQRIIIRSMTTEYGRGMCGYGDFGRYTFEA
                     KFRNWESYKFGNLINVDLLSNYACQMIFEQFGYDDKKHLEFDKETRSRYWRRDDTNKI
                     ERIGKKYQWLALYEILARVMDNFPTFSNRYADEIGLEYITNLDNFYLPKTQIKIVPPT
                     KT"
BASE COUNT          467 a          196 c          254 g          441 t
ORIGIN      
        1 ctgaacaagg aaaaaagcta tatagtagag ttggctatga taagggcgta tgggaagcat
       61 taagtgtatt gttgccagaa cgatttgatt ttgaagtatt tgaagtgatt gattattcaa
      121 aggaatggtc ttggtttgag attattgtag aaaatctctt ttggaggcag cctgaaaaaa
      181 tcaatatgca aaaactacat caatttttca aaaatagtcc atattttaat caagcaactt
      241 ggattaatat tttatatcaa ctggctaccg aaattaacca cccattaaat ataaaatatt
      301 tacataacaa actttattct ttttctttgg cagatagaga tgagatttgg acagctttta
      361 ttgctttgga gtctgatcaa tgcccagcaa ttgaacgatt actaacttgg tgtcagaaat
      421 caagtggtca agaaaatatt gaacccgaag cactattatt gggtgcaatt gctgttagtt
      481 ggctatttac ttctaccgat aaacgaagta gaaatggcta tattaatgca ctggctcatt
      541 tattatggaa tagattggaa attgcattgg cgttattcaa ggaatttata gaggttaatg
      601 acccttatgt tatggaaggt attttatctg ccattcacgg agctgttgct tattctgaaa
      661 attcatctgg cttaaaagca cttgcattag agatagataa tcaaatattt aatcaacctg
      721 aaacagaaga aatttatccc aatgttttgg ttcgtgatta tgctcgccat attattgaat
      781 actctttgca aaaagatgaa tattcatcag atgatattga gataatcaga gaaagaatta
      841 cgccacctta tagaagttca tttccccaaa acttaccaac caatgaagaa attgataaaa
      901 aatatcattc tgatggacaa agaatcatta tccgttcaat gacaactgaa tatggtcgtg
      961 gtatgtgtgg atatggtgat tttggcagat atacttttga agccaaattc cgaaattggg
     1021 agagttataa attcggcaat ctcatcaatg ttgatttatt aagtaattat gcttgccaaa
     1081 tgatttttga gcaatttggc tatgatgaca agaagcacct tgagtttgat aaagaaactc
     1141 gttcaagata ttggcgaaga gatgatacta ataaaattga gcgaattggc aagaaatatc
     1201 aatggttggc tttgtatgaa atcttggcaa gggtgatgga taattttcct actttttcta
     1261 atcgctatgc cgatgaaata gggcttgaat atattactaa tttggacaac ttttatctac
     1321 ccaaaaccca aattaaaatt gtaccgccaa ctaaaaca
//
LOCUS       DANLVT010000217         1290 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.218, whole genome shotgun sequence.
ACCESSION   DANLVT010000217 DANLVT010000000
VERSION     DANLVT010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1290)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1290)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1290
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.218"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            32..751
                     /locus_tag="PXC99_002549"
                     /pseudo
     CDS             32..751
                     /locus_tag="PXC99_002549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616566.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
     gene            811..1260
                     /locus_tag="PXC99_002550"
     CDS             811..1260
                     /locus_tag="PXC99_002550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudoazurin"
                     /protein_id="HDL5418945.1"
                     /translation="MLAKLKWNQLACVTLAFCSASVFSAHHEIKMLDNNAEGSMVFEP
                     GYVKAEVGDTVTFIPSHKGHWVESRSIPEGAEKFLSKEDEEFTITLTHEGVYVYYCPP
                     HRTMNMAGIIQVGQALNLEATQKEVEKIEKRTKENKGRLFEYLEQVK"
BASE COUNT          419 a          228 c          291 g          352 t
ORIGIN      
        1 gttttagtcg ttatctagga cagcccctac ttttaatact cgtaagcccc cttttgataa
       61 ccctaaagtt cgtcaagcat tgaattatgc ggtgaataaa actgaaattt taacttccgt
      121 ttaccaaggc tctgcaacgc cagctaaaaa cccaatgcct tctacgattt ggggatataa
      181 caacgaagta gccggttatg aatttaatcc ggaaaaggcg aagagcttgc ttaaagaggc
      241 cggattagaa aatggctttg aaacagaaat ttgggcaatg cctgtttctc gcccttacaa
      301 tccaaatgcc cgtagaatgg ctgaaatgat tcaagaggat tggaaagcaa taggggtaga
      361 ggcaaagata gtgagctatg aatggggaga atatcttaaa cgaatgggaa acggcgagca
      421 cgctaccgga atgattggtt ggaccggaga taacggcgat ccagataatt tcctcaatgc
      481 cctactcagt tgtaatgcgg tagaacaagg ctcaaactat gcagggtttt gtaatccaga
      541 gtttgaccgt ttaattaatg aggctgcgac tatcagtgat caaaacaagc ggtcagattt
      601 atataaaaaa gcgcaattca tctttaatga gcaagcacct tggttaccga ttgcacattc
      661 aacggtgtat tttccggtaa ggaaagaggt aaaaggctat gttgtcagcc cgtttattgc
      721 tcataatttt tatggtgttg agctggaata acctaaggta taatgaattg aactcatttt
      781 gtgcctcata aatttaggag caataaatat atgttagcga aacttaagtg gaatcaatta
      841 gcttgtgtaa cattggcatt ttgttcagcc tcagtatttt cagcccatca cgaaatcaaa
      901 atgttagata acaatgcgga aggatcaatg gtatttgagc ccggttatgt aaaagcagag
      961 gtgggcgata cggtaacatt tattccgtct cataaagggc attgggttga aagccgctcg
     1021 attccggaag gtgcggagaa gttcttatct aaagaagatg aggaatttac tattaccctt
     1081 actcacgaag gtgtttatgt ttactactgt ccgccacacc gaaccatgaa tatggccgga
     1141 attatccaag taggacaagc tctcaatctt gaagccacac aaaaagaagt ggaaaaaatt
     1201 gaaaaacgca cgaaagaaaa taaaggacgt ttatttgaat atttagagca agttaagtag
     1261 aagtgattta attttgcgat ctgcatcgaa
//
LOCUS       DANLVT010000218         1260 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.219, whole genome shotgun sequence.
ACCESSION   DANLVT010000218 DANLVT010000000
VERSION     DANLVT010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1260
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.219"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..547)
                     /locus_tag="PXC99_002551"
     CDS             complement(<1..547)
                     /locus_tag="PXC99_002551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein Hlp"
                     /protein_id="HDL5418946.1"
                     /translation="MNTLAKISLSVLFTLFLTACEQPNSTKTQSSAESPVQVKEESKE
                     EVKPADTGAQDYKMLREWQDTQEKALNDAIKAATETLTDKQKADSTLMQETVNNALLA
                     QIDHIKISAETLNIQNNEVKALKDKTLEVLTLGAQMIVEGAKMEKNPTPEAHKAFGEL
                     QTKLNQLAEEGQQLENILRAKY"
     gene            complement(614..1198)
                     /locus_tag="PXC99_002552"
     CDS             complement(614..1198)
                     /locus_tag="PXC99_002552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein HlpB"
                     /protein_id="HDL5418947.1"
                     /translation="MNKLTKISATALVALFLAACDKPAEKAPATEPTKTTEAAPTTTA
                     PAAEAAKPAETAVAAPSEAAKADYQKLVDWNTAQESTMATAQAELQKKLATQDPKQIQ
                     EGLSAFNKKVEETVKSLDAIEVSDAQIKTFKEKTKSVLTLSSEVISEQVKTISTPNDQ
                     AALQAVQQKAQSLIEAGNELQKLNVELQQRFSAK"
BASE COUNT          301 a          213 c          235 g          511 t
ORIGIN      
        1 catatttagc tcttaatata ttttctaact gttgcccttc ttcagctaat tgattcaatt
       61 ttgtttgtaa ctcgccaaat gctttatgtg cttccggtgt aggatttttc tccattttag
      121 caccttctac gatcatctga gcccctaaag tcaggacttc taaggttttg tcttttagtg
      181 ctttgacttc attattttga atattcaggg tttcagcact tatcttaata tgatcaattt
      241 gagctaataa tgcgttatta actgtctctt gcattaaggt agaatcggct ttttgtttgt
      301 cagtaagtgt ttctgttgcc gctttaattg catcatttaa ggctttttct tgagtgtctt
      361 gccattcccg taacatttta taatcttgag cgccggtatc agcaggttta acttcttctt
      421 ttgactcttc tttcacttga actggcgatt ctgctgagct ctgtgttttg gtagaattag
      481 gttgttcgca agcggttaaa aaaagggtaa ataatacaga taggctaatt ttagcgagcg
      541 tgttcatagt aatccttagt aattgcaaaa aaaagctaga gcaaaatact ctagcttttc
      601 attgaatggt aaattattta gctgagaatc tttgctgtaa ttctacgttt aatttttgta
      661 actcattacc agcttcaatt aaagactgag ctttttgttg tacggcttgt aatgctgctt
      721 ggtcatttgg tgtagagatc gtttttactt gttcagaaat cacttcactt gaaagtgtta
      781 aaactgattt tgttttttct ttaaatgttt tgatttgtgc atcagatact tcaatcgcat
      841 ctaagctttt tacagtttct tctacttttt tattaaatgc acttaatcct tcttgaattt
      901 gtttaggatc ttgtgtagct aatttctttt gtagttctgc ttgtgctgtt gccattgtgc
      961 tttcttgtgc cgtattccaa tcaactaatt tttggtaatc tgcttttgca gcttcgcttg
     1021 gagcggctac agctgtttca gcaggtttgg ctgcttctgc agcaggagct gttgtagttg
     1081 gtgcagcttc agttgttttt gtaggttctg ttgccggtgc tttttctgct ggtttatcac
     1141 aagctgctaa gaataatgcg actaaagcgg ttgcactgat ttttgttaat ttgttcatta
     1201 aaaaattcct caagaatata aaaataaaag ccaataaagg ctggttattg taccaataaa
//
LOCUS       DANLVT010000219         1241 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.220, whole genome shotgun sequence.
ACCESSION   DANLVT010000219 DANLVT010000000
VERSION     DANLVT010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1241)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1241)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1241
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.220"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..1033
                     /locus_tag="PXC99_002553"
     CDS             <1..1033
                     /locus_tag="PXC99_002553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5418948.1"
                     /translation="MLSSVALIKTSQEIDNEYLNYVMNSHYFYNISIGSMSGTGIPRI
                     TLTKLESYLVPVPPLLEQQRIVQKIEELLPLVERYEQTEQQLTKLNNTFPEQLKKSVL
                     HAAIQGKLTEQDPNDELASCLIERIKAEKNRLIAEKKLKKPKSVSEIVMRDNLPYEIK
                     AGQERCIADEVPFEIPQNWTWVRLGEVGDWSSGATPNRHNPEYYNGTIPWLKTGDLNN
                     GIISSIPEFITDKALQECSVRLNPVGSVLIAMYGATIGKLGILKIAATTNQACCACIP
                     FNGIYNKFLFYYLMSQKAEFQKKSEGSGQPNISKEKIINYLFPLPPIHEQHRIVQKIE
                     QLFAEIEKL"
BASE COUNT          439 a          218 c          228 g          356 t
ORIGIN      
        1 tatgttatcc agtgttgcct taattaagac ctcacaagaa atagataatg agtacttaaa
       61 ttatgtaatg aatagtcatt atttttataa catttctatt ggaagtatgt ctggaacagg
      121 tattccaaga ataacattaa ctaaattaga atcttattta gtcccagttc cgccactcct
      181 agaacaacag cgcattgtgc aaaaaatcga ggaattatta ccgcttgttg aacgctacga
      241 gcaaaccgaa cagcaactca ctaaactcaa caatacattc cccgaacagc tgaaaaaatc
      301 ggtgttacac gcagctattc agggtaaatt aaccgagcaa gatccgaatg atgaactggc
      361 atcttgcctg attgagcgga taaaagcgga gaaaaatcgt cttattgccg agaaaaaact
      421 caaaaaacca aaaagtgttt cagagattgt aatgcgtgat aatttacctt atgagatcaa
      481 agcaggtcag gaacggtgta tcgccgatga agtgccattt gagattcctc aaaattggac
      541 ttgggtgagg ttgggggaag taggtgattg gagttcaggt gcaactccaa accgacacaa
      601 tcctgaatac tataatggta cgatcccgtg gctaaaaaca ggagacttaa acaacggaat
      661 aatttcatct atacctgaat ttattacaga taaagcattg caggaatgtt ctgtaagatt
      721 aaatcctgtt ggttcagttt tgatagcaat gtatggagcg acaattggta agcttgggat
      781 attaaaaata gcagcaacaa caaatcaggc ttgctgtgcg tgtattcctt ttaatggaat
      841 ttataataaa ttcttatttt attatttgat gtcgcagaaa gcagaatttc agaaaaaaag
      901 tgagggaagt gggcaaccaa atatatcaaa ggaaaaaatt atcaattatt tatttccttt
      961 accaccaatc cacgaacaac atcgcattgt tcaaaaaatt gaacaattat ttgcagagat
     1021 tgaaaaattg taggagtcat catcgctttc ttgggcgtgt tggatacgcc ctacagtcac
     1081 taaattattg atcttttatc atatcggttt tcaaccaacc taaaaggaaa cctatatgat
     1141 ccatctattt gaaaagcacc ttaatcaatc taatcttgct gaaaataccc aatcagctta
     1201 tctttttgcg gtaaaacaat atcacaaaaa atttgatcag t
//
LOCUS       DANLVT010000220         1224 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.221, whole genome shotgun sequence.
ACCESSION   DANLVT010000220 DANLVT010000000
VERSION     DANLVT010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1224)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1224)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1224
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.221"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            31..1167
                     /gene="ompA"
                     /locus_tag="PXC99_002554"
     CDS             31..1167
                     /gene="ompA"
                     /locus_tag="PXC99_002554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_119863613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpA"
                     /protein_id="HDL5418949.1"
                     /translation="MKKTLVALAVLSAAAVAQAAPQANTFYAGAKAGWASFHDGLTQF
                     DNTYDYGSGINLGINLGINRNSVTYGVFGGYQILNQNNFGLATELGYDYFGRVRGNTT
                     FSGDDKEKTAAKHSAHGAHLSLKPSYEVVPNLDVYGKVGVALVRNDYYVQQHVDKDSR
                     IKVHNLKPSLLLGAGLEYAITPELAARVEYQYLNRVGNLDKAVRTTVGYLIPRGTNFQ
                     YSPDIHSVSAGLSYRFGQGAAPVEAPEVVTKNFAFSSDVLFDFGKSSLKPAAATSLDA
                     AHAEISNLGLANLAIQVNGYTDRIGKEASNLKLSQRRAETVANYIVSKGTNPANVTAV
                     GYGEANPVTGHTCDAVKGRKALIACLAPDRRVEIQVQGSKEVTM"
BASE COUNT          396 a          244 c          234 g          350 t
ORIGIN      
        1 tcgatgacaa tatttaagag gatcatcaaa atgaaaaaaa cattagttgc attagcagta
       61 ttatcagcag ctgcagtagc tcaagcagct ccacaagcta acactttcta cgcaggtgct
      121 aaagctggtt gggcatcatt ccacgacggt ttaactcaat ttgacaacac atatgattat
      181 ggatccggta ttaacctcgg tattaacctc ggtattaacc gtaactctgt aacttacggt
      241 gtattcggtg gttaccaaat cttaaaccaa aacaactttg gtttagcgac agaattaggt
      301 tatgactact ttggtcgtgt tcgtggtaac actacatttt ctggtgatga taaagaaaaa
      361 actgcggcta aacattcagc tcacggtgcg cacttaagct taaaaccaag ctacgaagtt
      421 gttcctaact tagatgttta cggtaaagta ggtgttgcat tagttcgcaa cgattactac
      481 gtacaacaac atgtagataa agattcacgc attaaagttc acaacttaaa accatctcta
      541 ttattaggtg ctggtcttga gtatgcaatt actcctgaat tagctgctcg tgttgaatat
      601 caatacttaa atcgtgttgg taacttagat aaggcagttc gtacaacagt tggttatcta
      661 ataccaagag gtacaaattt ccaatacagc ccagatatcc actcagtatc tgcaggttta
      721 tcataccgtt tcggtcaagg tgcagcacca gttgaagcac cagaagttgt aactaaaaac
      781 ttcgcattca gctctgatgt tttatttgat ttcggtaaat caagcttaaa accagcagca
      841 gcaacttctt tagatgcagc acacgctgaa atcagcaact taggcttagc aaacctagct
      901 atccaagtta atggttacac agaccgcatc ggtaaagaag catctaactt aaaactttca
      961 caacgtcgtg ctgaaacagt agctaattac atcgtttcta aaggtactaa cccagctaat
     1021 gtaacagctg taggttacgg tgaagcaaac ccagtaactg gtcacacatg tgatgcagtt
     1081 aaaggtcgta aagcattaat cgcttgctta gcaccagatc gtcgtgttga aatccaagtt
     1141 caaggttcaa aagaagtaac tatgtaatat agttattcag ttgaaaaatt gaatcaaaaa
     1201 aagcccgctt gttagtgggc tttt
//
LOCUS       DANLVT010000221         1222 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.222, whole genome shotgun sequence.
ACCESSION   DANLVT010000221 DANLVT010000000
VERSION     DANLVT010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1222)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1222)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1222
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.222"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..880
                     /locus_tag="PXC99_002555"
     CDS             <1..880
                     /locus_tag="PXC99_002555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AlwI family type II restriction endonuclease"
                     /protein_id="HDL5418950.1"
                     /translation="EIIDVLYTETFSRDNNLRADAPLETISEAFKLDISKVYVALSKD
                     LGITIKSPEQAATYVNDERYRRFNTLIDKKFNDSVLIELLNCFEKRDDKRIEELVTDE
                     AAIPTIFEYILGIIWYKVSERQGNILDFMKLSLEANLLPKTHAAGGYADIIYEYEACT
                     SYPKHSLLLEATLADGNNQRRMEMEPVSRHLGDYRIRFNNPFDYSLFVSTYLDKNVIS
                     DFRYRKIIPYTRDEETITGMKIISMDTDSLKKIIENKVKYKYLYEIFDKYHEMPLETV
                     DWHDGMIKEATGEYKS"
     gene            942..>1222
                     /locus_tag="PXC99_002556"
     CDS             942..>1222
                     /locus_tag="PXC99_002556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="HDL5418951.1"
                     /translation="MKNRIEHPKIFISYAWGSQEHDEKVIALATNLKGDGIDVIFDKW
                     QLKEGNDTFKFMEKSVLDESITNVLILIDPIYAKKANERAGGVGTETQI"
BASE COUNT          462 a          149 c          248 g          363 t
ORIGIN      
        1 agaaattatt gatgttctgt atacagaaac ttttagtaga gataataatc tcagggctga
       61 tgccccactt gaaactatat cagaagcatt caagttagat attagcaaag tatatgtagc
      121 tttaagtaaa gatttaggaa ttacaattaa gagtccggaa caagctgcaa cttatgtaaa
      181 tgatgaacga tacagaagat ttaatacttt gatcgataag aaatttaacg attctgtgct
      241 tatagagtta ctaaattgtt ttgagaaacg tgatgataaa aggattgaag aacttgttac
      301 agatgaggct gcaataccta ctatttttga atatattttg ggaattatat ggtacaaagt
      361 gagcgaaaga caaggaaata ttttggattt catgaagtta tcattagaag ccaatttatt
      421 gccgaagacc cacgcagctg gaggttacgc agacattata tatgaatatg aagcgtgcac
      481 ctcttatccg aaacattcat tattgcttga agcaaccctt gcagatggaa ataatcaaag
      541 aagaatggaa atggagcctg tttcaagaca tttaggcgat tataggatta gatttaataa
      601 tccgtttgat tacagcctat ttgttagcac atacttagat aaaaatgtaa tctcagattt
      661 tagatataga aagataattc catacaccag agatgaagaa accattacag gaatgaagat
      721 tatttcaatg gacacagatt ctcttaagaa aataattgag aataaggtta agtacaagta
      781 tctgtatgaa atatttgata aataccatga aatgccatta gagactgtag attggcatga
      841 tgggatgata aaagaggcta ctggagagta taagtcatag tgattataag atagtgagaa
      901 agaatactta ttttgaaagg aatacatggg aattgataca gatgaagaat agaattgaac
      961 atcctaagat ttttatttca tatgcttggg gatcacagga acatgatgag aaggttattg
     1021 ctttagctac aaatcttaaa ggagatggta tagatgtcat ttttgataaa tggcagctaa
     1081 aagaaggcaa tgataccttt aaattcatgg aaaaaagtgt tttagatgag agtattacca
     1141 atgtactgat tcttatagat cctatttatg caaagaaagc aaatgaaaga gccggtggcg
     1201 taggtacaga aacacagatt at
//
LOCUS       DANLVT010000222         1219 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.223, whole genome shotgun sequence.
ACCESSION   DANLVT010000222 DANLVT010000000
VERSION     DANLVT010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1219)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1219)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1219
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.223"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..707)
                     /locus_tag="PXC99_002557"
     CDS             complement(<1..707)
                     /locus_tag="PXC99_002557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5418952.1"
                     /translation="MSIYRRKANGPWWVDITTPNGKRIKRSTRTLVKREAQQYHDKLK
                     QEMWAEDKLEEKRKYIFEDALLHYVRAAEELKDKATKKRHAEYWLSKFAGRELSSLTA
                     QEIILNIPKKNANTKKPLSHSTQNKYVKSLSRVLNIAHKLGMLDAVPHIPKKKEPPIR
                     VRWITKEQAKQLIDKLSSDWMKSICKFALMTGARRTEILTMTWDKIDLVRKVAIVTND
                     VAKSGKARSLLLNQEAI"
     gene            complement(611..934)
                     /locus_tag="PXC99_002558"
     CDS             complement(611..934)
                     /locus_tag="PXC99_002558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5418953.1"
                     /translation="MEHLTINQVAKELNCHPNTVRQHLADWGFFKMVGSEVWRINRED
                     LERAKKRAGIDPIRKRSDNDRGLSLSVEENEKCRSTDEKQTVRGGLISQPQTARELRE
                     ALARL"
     gene            complement(1015..1182)
                     /locus_tag="PXC99_002559"
     CDS             complement(1015..1182)
                     /locus_tag="PXC99_002559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HDL5418954.1"
                     /translation="MQFTYGSICSGIEATSIAWHGLGKPLWFSEIEPFPCAVLAHRFP
                     NVPNGNGMAVP"
BASE COUNT          301 a          280 c          216 g          422 t
ORIGIN      
        1 ttaattgcct cttgattcag taatagcgat cgtgccttac ctgatttagc gacatcatta
       61 gtcacgattg ctacctttct tacaagatct atcttatccc aagtcattgt caaaatttct
      121 gtccgtctgg ctccagtcat caaagcaaac ttacagatag atttcatcca gtctgaactt
      181 aatttatcta ttagctgttt tgcttgttct ttggtgatcc agcgtacacg aattggcggc
      241 tctttctttt tcggtatgtg tgggactgca tccaacatac caagtttatg agcgatattt
      301 aatactctcg ataaagattt cacatactta ttttgcgtac tatgagatag aggctttttc
      361 gtatttgcat tctttttcgg gatatttagg ataatctcct gagctgttaa agagctgagt
      421 tcacgaccgg caaatttgga taaccagtat tcagcatgtc gcttttttgt ggctttatct
      481 tttaattctt cggccgcacg aacgtaatgg agcaaagcat cttcaaagat atattttctc
      541 ttttcctcga gtttatcctc tgcccacatt tcttgcttga gtttatcgtg atactgctga
      601 gcttcacgtt ttacaagcgt gcgagtgctt ctcttaattc tcttgccgtt tggggttgtg
      661 atatcaaccc accacggacc gtttgctttt cgtctgtaga tcgacatttt tcattctcct
      721 cgaccgacag agataaccct cggtcattat cagatcgttt tcttattggg tcaataccgg
      781 ctctcttttt tgctctttcc aaatcttctc ggttgatccg ccaaacttcc gagcctacca
      841 ttttaaaaaa tccccaatcc gccaaatgtt ggcggactgt atttggatgg caatttaatt
      901 cttttgccac ttgattaata gtaagatgtt ccattcatta ctttctccaa aataaatccc
      961 tctaaacgag ggattgtact aaataatcgt taagtctttg ccttatccac tgcatcaagg
     1021 cacagccata ccgtttccat ttggcacatt ggggaaacgg tgagctaata ccgcacaggg
     1081 gaatggctca atttcagaga accacaaagg cttacctaaa ccgtgccacg ctatacttgt
     1141 agcttcgata ccgctacaaa ttgagccgta ggtgaattgc attttttacc tatcctatcg
     1201 aaatactcaa attcccaat
//
LOCUS       DANLVT010000223         1204 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.224, whole genome shotgun sequence.
ACCESSION   DANLVT010000223 DANLVT010000000
VERSION     DANLVT010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1204)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1204)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1204
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.224"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>1204
                     /locus_tag="PXC99_002560"
     CDS             <1..>1204
                     /locus_tag="PXC99_002560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helicase/relaxase domain-containing protein"
                     /protein_id="HDL5418955.1"
                     /translation="SLMYAMSGHNDKAGLLSEIVQKADQHSVTLAIGGDVNKLVQRPV
                     NSLPKQIVLALRYLLEQKIKLNTPKGPADGWFTEDGLWLVSKTAADNIRTYLLGQGIS
                     VPKDNPKLFDEMQSLGIVEESPSGGAIWSCRIQADSGWTPATTFTLLRVKPEVAWENI
                     NDRPAYFAGKVKVIEQITEEVNAEVQPPLVEETTKISLLPSKQSEAIIPSEETEISKA
                     ITSSDNATSAEVIINNENDLTSFVLDMFAPTETIEQNISVISSNKEQQIVMTTLTEQE
                     KVPPKKVKLEKSKKKNLQLTTLEPWNDMINPITGKEFVNWLKEGIATNKFAINKPSAK
                     LHIVDGNLFLVTPVIFEMYLQECGQPYDKETINNLQYDFQGLGLHSLKKTMTNGKPDT
                     INFWKCDV"
BASE COUNT          409 a          212 c          258 g          325 t
ORIGIN      
        1 cttcactgat gtatgcaatg tctgggcata acgataaagc cgggctttta tctgagatcg
       61 tgcagaaagc cgatcagcat agtgttacgc tagcaatcgg tggcgatgtg aataagctgg
      121 tacagcgacc agttaattca ttgccgaagc aaattgtgct ggctctacgt tatttactgg
      181 agcagaaaat caaattaaat acgccaaaag gaccagcaga cggctggttt accgaagatg
      241 ggctgtggct ggtaagtaaa actgctgccg ataatatccg aacttattta ctgggacagg
      301 ggatttccgt gcctaaagat aatccaaaac tgtttgatga aatgcaatct cttggtattg
      361 tggaagagtc tccttccggc ggtgcaattt ggagctgccg tatccaagcc gattccggtt
      421 ggacaccggc gacaacattt acgctattac gagttaaacc ggaggttgct tgggagaata
      481 tcaacgatag accggcgtat tttgccggaa aagtcaaagt gattgaacag ataactgaag
      541 aggtcaatgc agaggttcag cctccattag ttgaagaaac cactaaaatt tctctattac
      601 cgagcaagca atcggaggct attattccgt ctgaggaaac ggaaatatcg aaggcaatta
      661 caagttcaga caatgcaaca tctgcggaag taatcataaa taatgaaaat gatttaactt
      721 cttttgtatt ggatatgttt gctcctacag agacaattga gcaaaatatt tctgtcattt
      781 cttcaaataa agagcagcaa atcgtaatga caacacttac ggaacaagaa aaagttccgc
      841 cgaaaaaagt taaattagag aaaagtaaga aaaaaaatct tcaattaacc actctagaac
      901 catggaatga tatgattaat ccaattactg gaaaagaatt cgtaaattgg ttgaaggagg
      961 ggatagcaac caataaattt gcaattaaca aaccttctgc aaaattacat atagtagatg
     1021 gtaatttatt tttagtcaca ccagttattt ttgaaatgta tttgcaagaa tgtggccaac
     1081 cttatgataa ggaaactata aacaatcttc agtatgattt ccaggggctt ggtcttcatt
     1141 ctcttaaaaa aaccatgact aatggtaagc cagatacaat aaatttttgg aagtgtgacg
     1201 tgat
//
LOCUS       DANLVT010000224         1142 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.225, whole genome shotgun sequence.
ACCESSION   DANLVT010000224 DANLVT010000000
VERSION     DANLVT010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1142)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1142)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1142
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.225"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            102..347
                     /locus_tag="PXC99_002561"
     CDS             102..347
                     /locus_tag="PXC99_002561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418956.1"
                     /translation="MTNDGSIIARGSGFTTYALELENDGLKYLVGFVQPNGNAKEFIE
                     PGATIRRSNDQPSIGSVDCDPRKKIHYKFDVHLMNTL"
     gene            566..>1142
                     /locus_tag="PXC99_002562"
     CDS             566..>1142
                     /locus_tag="PXC99_002562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4852 domain-containing protein"
                     /protein_id="HDL5418957.1"
                     /translation="MCKKAFPLWGLIFGLLLSTSAFSVSKNFNYQNILMESLHFSENI
                     ELSSLSKDWLLYSDRNTYHKYQNDEFEFQDKIEQAGKKLQKLVDDRKSEEAPIVFTIP
                     VNSEFGNYDFEQGKFEYQPLMNGHMYISSNQYTENLPRKINLYVSNPEFIDGIPMGKD
                     KAKEFLQKRKNSLGNINRSVILYVDVQFEKAE"
BASE COUNT          394 a          184 c          221 g          343 t
ORIGIN      
        1 ttaccagcac agaaggtaaa cctctcacag ttaaacgggt aggaaatgat tacgagtatt
       61 cgtatgacaa aactactttc aaaaacccga ttaaaaaggc agtgaccaac gacggttcga
      121 ttatcgccag aggctcaggt tttactactt atgccttaga gttggaaaat gatggcttga
      181 aatatctagt cggatttgtt caaccaaatg gaaatgcaaa agagtttatt gagccgggag
      241 caacaattcg ccgtagtaat gatcaaccaa gtattggttc tgtggattgt gaccctcgta
      301 aaaaaatcca ttataagttt gatgttcatt tgatgaatac tttataatac ctttgtggtg
      361 ctagagctag cccaagttaa aaaagacaaa gctcggcaga tgaacaattg tggtgtcaga
      421 gctgacccac gttaaaaaac acaatgctcg gtaggtaaat cccttaggtt taaaaaatct
      481 aagggatttt tgtttaaaag acttgctctt tattatcagg tggatctatc ataatttaaa
      541 ctctctaatg tgtcaggaga taaaaatgtg taaaaaagct ttcccattat ggggcttaat
      601 cttcggatta ctgctatcca cttcagcatt ctcagtgtct aaaaacttca actatcaaaa
      661 catattgatg gaatcattac attttagtga gaatatcgag cttagttcgt tatctaaaga
      721 ctggttactt tacagcgata gaaatacgta tcataaatat caaaatgacg agtttgagtt
      781 tcaggataaa attgagcaag ctggtaagaa actacaaaaa ctggtggatg acagaaaatc
      841 tgaagaagcc cctattgttt tcacaattcc tgtaaactca gaattcggga attatgattt
      901 tgaacaaggt aagtttgagt accaacccct gatgaatggg catatgtata tttcttctaa
      961 tcaatatact gaaaatttgc caagaaaaat taatctgtat gtttctaatc ccgagtttat
     1021 tgacggtata cctatgggca aggataaagc taaagagttt ttacagaagc gtaaaaattc
     1081 tttgggaaac ataaatcgct ctgttatatt gtatgttgat gtacaatttg aaaaagcaga
     1141 ag
//
LOCUS       DANLVT010000225         1117 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.226, whole genome shotgun sequence.
ACCESSION   DANLVT010000225 DANLVT010000000
VERSION     DANLVT010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1117)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1117)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1117
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.226"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(14..>1117)
                     /locus_tag="PXC99_002563"
     CDS             complement(14..>1117)
                     /locus_tag="PXC99_002563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015483985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5418958.1"
                     /translation="GHYLCTKVKGVRFFNNIAIGGRNVSAYGATSCSDIFIFGNREQG
                     MAVTTVDVEAGVQVEDVQTGECVVANNIFRHDIWMSGAKNAIINSNLCRRLRVTSGNP
                     TDTGSNNVEFSNNQAKSIAISKYGSFDNPSLFIDNINFINNILEPSEFNQDVYIDGTI
                     LKQCQFINNRCISKSKQYSVRLARNNPFLNLTFKSNKLSDNPAIISGKQGVIFCDDLS
                     LGVNKHRLRLRFSSPINFTVNQEWQKMPFDRVLNDINGHVDIVSGQFIARTGGTFHLK
                     GKITVTNSSEDVLNLYQLRLLINNEEKERLINQSVSPKNSKSNTNGMTTINFDTVVYL
                     KVGDIVDLQYKTTHELTLLSDSFLSQIYVTQEF"
BASE COUNT          352 a          218 c          170 g          377 t
ORIGIN      
        1 gttttttagt cacttaaaac tcctgagtca cataaatttg agataaaaat gagtctgaca
       61 gtaatgtcaa ctcatgcgtt gttttatact gcaaatcaac aatgtcacct acttttaaat
      121 aaactacagt atcaaaattg attgttgtca taccatttgt atttgatttg ctgtttttag
      181 gtgaaacact ttgattaatc agtctttctt tctcttcgtt atttattaac agcctgagtt
      241 gatataaatt cagcacatct tccgatgaat ttgtaaccgt tattttacct tttaaatgaa
      301 aagtgccgcc tgtccttgca ataaattgac cactgacaat atcaacatga ccattgatat
      361 catttaacac tctgtcaaac ggcatttttt gccattcttg attaacagta aaattaatcg
      421 gcgatgaaaa tcgcaatctt aatctgtgct tatttactcc taagctcaaa tcatcgcaga
      481 aaataacacc ttgcttacct gatataatcg caggattgtc cgataattta ttactcttaa
      541 atgttaaatt taagaacgga ttattgcgag caagtctgac agaatattgc ttagacttgc
      601 taatacaacg attattaata aattggcact gttttaaaat tgtcccgtca atatacacat
      661 cttgattaaa ttcactgggc tccaaaatgt tattaataaa attgatatta tcaataaaca
      721 atgaaggatt atcgaaagaa ccatatttcg atattgcaat agattttgct tgattatttg
      781 aaaattctac attgttgctg cctgtgtcag tcggattacc tgatgtgaca cgcaagcgac
      841 ggcagaggtt gctgttgata atggcatttt tagcaccaga catccaaata tcgtgtctga
      901 aaatattatt cgctaccaca cattcgccag tttgtacatc ttccacttgt acgcccgctt
      961 ccacatcgac tgtcgtcact gccatcccct gttcacgatt accaaaaatg aaaatatcag
     1021 agcaagatgt tgcaccgtaa gctgatacat tgcgacctcc aattgctata ttgttaaaaa
     1081 atcgcacacc tttaactttg gtgcagagat aatgtcc
//
LOCUS       DANLVT010000226         1100 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.227, whole genome shotgun sequence.
ACCESSION   DANLVT010000226 DANLVT010000000
VERSION     DANLVT010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1100)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1100)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1100
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.227"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..1033
                     /locus_tag="PXC99_002564"
     CDS             <1..1033
                     /locus_tag="PXC99_002564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418959.1"
                     /translation="HLGESLKRALESLGHQAVFTDLILHGHSMIYKQADIDFMWKKVK
                     DICDEKADMFISFRPMNLTTEMLEYIGKRMKTAIWLSDDPVLYKTCYSQVVNHYDVLL
                     HCGYKEVMDFYEANNHPKGFNFPFWTDHVAFPSVYNPLHSDYEIAFLGNMNGQVRRKR
                     YMELASLPFTKKVFGLIDSDPLAMHGGFINEAYLHTKRVTEVLSKAKVGVSIPQFFTE
                     YNGLDYDYPELAGLGYFQFPSRVIQYAASGLPIAAVGDERMKEVYPEIFVGNSITELE
                     PYIKQICEDYDFALSESAKILTRFRKNYSALSRAMMLIDLVENLDKLQSQTTQERAIL
                     FTKYKAQYN"
BASE COUNT          371 a          160 c          215 g          354 t
ORIGIN      
        1 tcatttgggc gaaagtttaa aaagagcttt ggagtcgtta gggcatcaag cagtatttac
       61 agatttaatt ttgcacggcc attctatgat ttataaacaa gcggacatag atttcatgtg
      121 gaaaaaagta aaagatattt gtgatgaaaa agcagatatg tttatctcat ttcggccgat
      181 gaatctaacg acagaaatgc ttgagtatat aggcaagcga atgaagaccg ctatttggct
      241 ttcagatgac cctgttttat ataaaacttg ctattctcaa gtagtaaatc attatgatgt
      301 attattacat tgcggatata aagaagttat ggatttttat gaagctaata accatccaaa
      361 aggctttaat tttccgtttt ggacagatca tgtagcattt ccaagtgtat ataacccgct
      421 tcattctgat tatgagattg catttttagg taatatgaat gggcaagtta gacgcaaaag
      481 atacatggaa ttggcttcat taccatttac caaaaaagta ttcggtttaa tagattcaga
      541 tccattagca atgcatggtg gatttatcaa tgaagcatat ttacatacaa aacgtgtaac
      601 agaggtttta tctaaggcaa aagttggggt gagtatccca caattcttta ccgaatataa
      661 tggtttagat tatgattatc ctgaattggc gggtttagga tatttccaat ttcctagtcg
      721 agttatccaa tatgctgcaa gtgggttacc tattgcagcg gttggtgatg agagaatgaa
      781 ggaagtttat cctgaaatct ttgttggcaa tagtattaca gagctggagc cgtacattaa
      841 acaaatttgt gaagattatg attttgcact atcagaatcg gctaaaattc taactagatt
      901 tagaaagaac tattctgcct tatcccgtgc catgatgttg attgatttgg tagaaaattt
      961 agacaaacta cagagccaga caacacaaga gcgcgcaatt ttatttacta aatataaagc
     1021 tcaatacaac taggagtaaa ctttatgaat attaaagact tacttaaaga gatcagcttt
     1081 aaagctgtaa ttaatgatct
//
LOCUS       DANLVT010000227         1093 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.228, whole genome shotgun sequence.
ACCESSION   DANLVT010000227 DANLVT010000000
VERSION     DANLVT010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1093)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1093)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1093
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.228"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..192
                     /locus_tag="PXC99_002565"
     CDS             <1..192
                     /locus_tag="PXC99_002565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5418960.1"
                     /translation="PQDGSVIDWDNIKNAKLTKYPLDNSEKRTSYLGCFTTDVSESYT
                     VDGESVRDIQLNALRKVNE"
     gene            192..560
                     /locus_tag="PXC99_002566"
     CDS             192..560
                     /locus_tag="PXC99_002566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418961.1"
                     /translation="MKITLNLGIEYNGKIRRDCTVRLLTMGGQCTAQEMIADLGFEEN
                     SEALSKREQTLVDMAYLSQQVTFDGIYQGNVTAQFLFDNLATEDYWQLIEATLTLRKK
                     RLENGVSQSESESPANPDLA"
     gene            590..778
                     /locus_tag="PXC99_002567"
     CDS             590..778
                     /locus_tag="PXC99_002567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418962.1"
                     /translation="MILLSKFAITAEQVWQMPLLEVFAWIESYLESEGVKTPHSPMGA
                     NSEVKRESYVFTRCGKIE"
     gene            831..>1093
                     /locus_tag="PXC99_002568"
     CDS             831..>1093
                     /locus_tag="PXC99_002568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418963.1"
                     /translation="MAKNMKVQLELTAKDTASPVLNQAAKTAEKAFKNTERAAQKSGN
                     AQTQAAQKAANATESSNRKIEQSYRNARRVAADVSRARETLGVR"
BASE COUNT          348 a          216 c          274 g          255 t
ORIGIN      
        1 cctcaagacg gttcggtaat tgattgggat aacattaaaa atgcgaagct cactaaatac
       61 ccgttagaca atagcgaaaa acgcacctct tatttaggct gttttactac cgatgtgagc
      121 gagtcttaca ccgttgatgg tgagtcggtg cgtgatattc aactcaacgc attgcgtaag
      181 gtgaatgaat aatgaaaatc actttaaatc ttggcattga atataacggg aaaattcgcc
      241 gtgattgtac ggtgcgattg ctgacgatgg gcggtcaatg cacggctcaa gaaatgattg
      301 cggatttagg gtttgaggaa aactcggaag ccctatcaaa gcgtgaacaa accttggtcg
      361 atatggctta cctttcgcag caagttacct ttgatggtat ttatcaaggt aatgtgacgg
      421 ctcaattttt atttgacaat ttagctaccg aagactactg gcagttgatt gaggcaacgc
      481 tcacactccg aaaaaagcgg ttagaaaatg gggtgagcca aagcgagagc gaaagcccgg
      541 caaatcccga tttggcgtag cagaagcctt taagcagtac cgacaagcgg tgattttact
      601 ctcaaaattt gcaattaccg ccgagcaggt atggcaaatg ccgttgcttg aggtatttgc
      661 gtggattgag agctacttgg agagtgaggg cgtaaaaaca ccgcatagcc caatgggtgc
      721 gaatagcgaa gtgaaacgcg aaagctatgt ctttactcgg tgtggcaaaa ttgaataggg
      781 gcgaaagccc cttttttgta ctttaaaatg agtttaaaga gactttaaaa atggcaaaaa
      841 atatgaaagt gcaactggaa ttgacggcaa aagatactgc ctccccagtt ttaaaccaag
      901 ccgctaaaac cgccgaaaaa gcctttaaaa atacagagcg agcggcacaa aaaagtggca
      961 atgctcaaac gcaagcagca cagaaagcag cgaatgctac agaaagctca aatcggaaaa
     1021 tagaacagag ttaccgtaat gcccgccgag tggctgccga tgtgagccga gcccgtgaaa
     1081 cattaggtgt tcg
//
LOCUS       DANLVT010000228         1014 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.229, whole genome shotgun sequence.
ACCESSION   DANLVT010000228 DANLVT010000000
VERSION     DANLVT010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1014)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1014)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1014
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.229"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..786
                     /locus_tag="PXC99_002569"
     CDS             <1..786
                     /locus_tag="PXC99_002569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5418964.1"
                     /translation="LKTLSRDDLSAEERTTKTIDSVKLRIYLNEQARNRKNYINGFVP
                     TDWIPEITDQMTKSKNLWLKYEEEAKTTLKPYQEETISRVIQDEINKKMAEIGTTTLE
                     IGGKEHELEDLENQINALALTDEEKLAEDVENDLISKLDEAKAALAKNQQTLKEKRDE
                     LLGLNNKLDSSPLVKKGKNALAEGTNAFASGENAIAFGTDSQATGNNAIALGANSKAN
                     AESAIAIGKGAQALKEKALALGENAIANRASAIAIGDNHSSKL"
     gene            complement(835..>1014)
                     /locus_tag="PXC99_002570"
     CDS             complement(835..>1014)
                     /locus_tag="PXC99_002570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS481 family transposase"
                     /protein_id="HDL5418965.1"
                     /translation="RKKIYTDLTTLQADLDEWLMYYNHHRTHQGKMCCGRTPMATLLD
                     GKRIWVEKEFKLKLI"
BASE COUNT          379 a          187 c          181 g          267 t
ORIGIN      
        1 ttaaaaactt tatctagaga tgacttaagt gcagaggaac gtacaaccaa aacaattgac
       61 tccgttaaat taagaatata tctcaatgaa caagcacgaa atcgtaaaaa ttatattaat
      121 ggatttgtac ctaccgattg gattcctgaa attacagatc aaatgacaaa atccaaaaat
      181 ctatggttaa aatatgaaga ggaagccaaa acaacattaa aaccatacca agaagaaaca
      241 atatctaggg ttatacaaga tgaaattaat aaaaaaatgg ctgaaatagg tactacaaca
      301 ctagagattg gtggtaaaga acacgagctc gaggatcttg aaaaccaaat taatgcttta
      361 gctttaactg atgaagaaaa acttgcggaa gatgtggaaa atgatttaat ctcaaagctt
      421 gatgaggcta aagcagcctt agcaaaaaac cagcaaacgc tcaaagaaaa gcgtgatgaa
      481 ttactagggc taaataacaa attagatagc tcaccacttg ttaaaaaagg taaaaatgca
      541 cttgcagaag gcacgaatgc ctttgcttct ggtgaaaatg ccatcgcatt cggcacggat
      601 tcacaagcta caggtaataa cgctatcgca ctaggtgcaa attcaaaagc aaacgcagaa
      661 agtgcgattg caattggtaa aggtgcacaa gcattaaaag aaaaagccct tgctttaggc
      721 gaaaatgcca ttgccaacag agcatctgct attgcgattg gtgataacca ttcatctaaa
      781 ttgtagaaga tcaaacctaa tctgacagtc ccccgtttta aattaccgtg tctgtcagat
      841 taatttgagc ttaaattctt tttccaccca aatccgtttt ccatcaagta aggttgccat
      901 cggtgttctg ccacagcaca tttttccttg atgtgttcga tggtgattat aatacattaa
      961 ccactcatct aaatccgctt gtaatgtcgt taaatccgta taaattttct tcct
//
LOCUS       DANLVT010000229         1013 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.230, whole genome shotgun sequence.
ACCESSION   DANLVT010000229 DANLVT010000000
VERSION     DANLVT010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1013)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1013)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1013
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.230"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            95..682
                     /locus_tag="PXC99_002571"
     CDS             95..682
                     /locus_tag="PXC99_002571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SocA family protein"
                     /protein_id="HDL5418966.1"
                     /translation="MFDELKIAQATAYLLHKAGGTMEHIKVMKLLYLADRLSWQRYGY
                     SISNDEYYSLPYGPVLSNTLNLMRGEEASLYQKTSIWGEWIADKEDHKISLKKSVNTE
                     DEYFFDCLSESDTEILEEVFATFGNYKPFALVEYTHNPKYIPEWEDPQGRSKPISLST
                     LLTKLGKTPSEIESILEQQAEKGTMDNLFKGLGNA"
     gene            675..992
                     /locus_tag="PXC99_002572"
     CDS             675..992
                     /locus_tag="PXC99_002572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418967.1"
                     /translation="MLEIKRQVTILRPTNYGKEENHYKHLYILLTDPCFDGETGKGDM
                     ILSVNCSSIKDGKALDETCILKAGTHEFITRDSFIFYRHIKIDSLDEIKANIEAGYFI
                     QKP"
BASE COUNT          363 a          190 c          208 g          252 t
ORIGIN      
        1 ggaacaatcc ccacaggtat ttgaacaaat cgcacgtctt taaaatatta aattaagaga
       61 aagcactatt tgcgatgtag caggagataa aacaatgttt gatgaattaa aaatagccca
      121 agcgaccgcc tatttgctac ataaggcagg cggaacaatg gagcatatta aggtaatgaa
      181 attgctttat cttgcggatc gcttatcgtg gcaaagatac ggctattcta tttctaatga
      241 tgaatattat tcattgcctt atggaccggt attaagcaac acactcaacc taatgcgagg
      301 agaagaagcg agcttatacc aaaaaaccag tatttggggc gagtggatag cagataagga
      361 agatcacaaa atcagcctta aaaaatccgt aaataccgaa gatgaatact tctttgattg
      421 cctttcagag agcgacaccg aaattttaga agaggtattt gcgacctttg gaaattataa
      481 gccattcgcc ctagtggaat atacccataa ccctaaatac attcccgaat gggaagaccc
      541 acaaggcaga agcaagccga tttctttaag cacgcttctt actaagctag ggaaaacgcc
      601 aagcgagatc gaaagcattt tagagcaaca ggcggaaaaa gggacaatgg ataacctttt
      661 caagggctta ggcaatgctt gaaatcaaaa gacaagtaac gattcttaga ccgaccaact
      721 acggcaagga agagaaccac tacaagcatt tatatattct gcttaccgat ccgtgctttg
      781 atggtgaaac cggtaaagga gatatgattt taagtgtaaa ctgctcaagc attaaagacg
      841 ggaaagcact tgatgaaact tgtattttaa aggcaggaac acacgaattt atcacacggg
      901 acagcttcat tttctaccgc catataaaaa ttgattcgtt agatgagatt aaggcaaata
      961 tagaagccgg ttattttatt caaaagccct aattaatgat gaagcctatc aac
//
LOCUS       DANLVT010000230         1010 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.231, whole genome shotgun sequence.
ACCESSION   DANLVT010000230 DANLVT010000000
VERSION     DANLVT010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1010)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1010)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1010
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.231"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(34..912)
                     /locus_tag="PXC99_002573"
     CDS             complement(34..912)
                     /locus_tag="PXC99_002573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL5418968.1"
                     /translation="MFFYRHYLRADTKRSYNNIIRIIKKRYPNLNANDVTTDMLIEWR
                     NQVVGNTIKAVTWNNYVRHLKALYNFAIAQGLLCMSSNPFNHLFIRESRRKKKTYSSE
                     QLHKIDYILHNNIILPSFLKPSWFILAIIMTLRCTGIRRGQLVKLKIGDVNLSNRTIY
                     ISPEINKNHDYHIVPISDSLYPHIERLIQELKIHKQTDDCQLFNLNLFSRYTRRKGQP
                     MSQNQLTHIFRHISDLVGFTSSPHRFRHTVATQLMKKPENVYVVKKLLGHKDISVTLG
                     YIEYDVEMLRDTVNLL"
BASE COUNT          321 a          176 c          154 g          359 t
ORIGIN      
        1 atgagagaat agttttctct catttctctt ttattagagt aagttcacgg tgtctcgtag
       61 catttccaca tcgtattcaa tatatcctaa tgtaacgctg atatctttat gacctaataa
      121 tttcttaact acataaacat tttcaggttt cttcatcaat tgagtagcta ctgtatgccg
      181 aaatctatgt ggtgatgacg tgaagccaac caaatcggaa atatgcctaa atatatgagt
      241 aagctggttt tggctcatcg gctgaccttt cctacgagta taacgagaaa ataaattgag
      301 gttaaataac tggcaatcat ccgtttgttt atggatcttt aactcctgaa tcagcctttc
      361 tatatgggga taaagtgaat cggatatcgg tactatatga taatcatggt ttttattaat
      421 ttctggtgaa atatagatcg tcctatttga taaattaaca tcaccgattt tcagtttaac
      481 caattgccct ctcctaattc ctgtgcatct caatgtcata atgatagcaa gaataaacca
      541 gctaggtttt aaaaaactag gtaagatgat attattatgt agaatataat cgattttatg
      601 caactgctca ctggaataag ttttcttttt tcttctagat tctctaataa ataaatgatt
      661 aaatggatta ctactcatgc aaagtagccc ctgtgctatc gcaaaattat ataatgcttt
      721 taggtgtctc acataattat tccacgtcac agctttaatt gtattaccaa caacttgatt
      781 acgccattca attaacatat cagtagtcac atcattcgca tttaagtttg gataacgctt
      841 tttgataatt cgaataatat tgttataact tcgtttcgtg tccgcccgta aataatgacg
      901 atagaaaaaa atcgttccaa taatatatcg aaggaaatct tagaatccat attatgtgtc
      961 ctcttcctgt aaagttaaac agtggttatt tagtaacatt ttatccccaa
//
LOCUS       DANLVT010000231          983 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.232, whole genome shotgun sequence.
ACCESSION   DANLVT010000231 DANLVT010000000
VERSION     DANLVT010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 983)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 983)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..983
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.232"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            136..>983
                     /gene="msrA"
                     /locus_tag="PXC99_002574"
     CDS             136..>983
                     /gene="msrA"
                     /locus_tag="PXC99_002574"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005546455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDL5418969.1"
                     /translation="MKYNQLLLCLVSAIFTTSSIANITTPNEMRSENLQDIYLAGGCF
                     WGIEAYMEKIYGVKEATSGYANGKTEQTAYRIIGQTDHAETVHVTYDANKISLEKLLQ
                     YYFKVIDPTSKNKQGNDIGRQYRTGIYYQNEQDKQIILKEIQAQQAKYKQKIQVQVEP
                     LKHYILAEEYHQDYLKKNPNGYCHIDLNQANSIIIDPKDYPKPSDATLKMKLTPLQYS
                     VTQRKNTERSFSNEYWDNTAPGIYVDITTGEPLFSSLDKYDSGCGWPSFTKPIINEVV
                     NYTEDN"
BASE COUNT          380 a          176 c          164 g          263 t
ORIGIN      
        1 taaacaatat tcgactaatc ctatagagag taaaaccaat tttgatctta gcaaaaaagt
       61 aagaaattat gaatgtttaa ggttaaaccc tcatccttaa aaaataaaat tacataagtt
      121 ataaaggaga actggatgaa atacaatcaa ctgttactat gtttggtgtc tgctatcttt
      181 accacctcct caatagcaaa catcacaacc cctaacgaga tgcgatctga aaacttacag
      241 gatatttact tggcaggagg atgtttctgg ggcattgaag cctatatgga aaaaatatat
      301 ggcgtaaaag aggctacatc gggctatgcc aatggcaaaa ctgagcaaac tgcttaccga
      361 attatcgggc aaaccgatca tgcagaaaca gttcacgtga cctatgatgc taataaaatt
      421 tctttagaaa agctgttgca atattacttt aaagtaattg atccaaccag taaaaataaa
      481 caaggtaatg atattggccg ccaatatcgg acaggtattt attatcagaa tgagcaagat
      541 aaacaaatta ttttaaaaga aatacaagct caacaagcaa aatacaaaca aaaaatacaa
      601 gtgcaagtag aaccattaaa acattatatt ttggcagaag agtatcatca ggattaccta
      661 aagaaaaatc caaatggcta ctgccatatt gatttaaacc aagccaacag cattattatc
      721 gatccgaaag attatcctaa acctagtgat gcaacattaa aaatgaaatt aacgcctttg
      781 caatatagcg ttacccaacg taaaaatact gagcgttcat tcagcaatga atattgggat
      841 aataccgcac cgggcattta tgttgatata actacaggag agcctctttt ttcatctctc
      901 gataaatatg actccggctg tggctggcca agttttacca aaccaattat caatgaggtt
      961 gttaactata ccgaagataa tag
//
LOCUS       DANLVT010000232          979 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.233, whole genome shotgun sequence.
ACCESSION   DANLVT010000232 DANLVT010000000
VERSION     DANLVT010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 979)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 979)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..979
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.233"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            134..820
                     /locus_tag="PXC99_002575"
     CDS             134..820
                     /locus_tag="PXC99_002575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418970.1"
                     /translation="MAANSINASHIVGSSITADKLNVNNLAAISANLGKVTAGTITGT
                     TISGGTISGTTITGGIIKGARIEGLTGKFTGELEINQLIGGNIYEAKTWTSKATGKSK
                     TYSETKNSFALSDTYYEYVCQFVLPATKATRTLYVVHTPTGESKSETFYGSGSNRTPT
                     TITLPSVIDISNTISPNVSNPFNDSGAILIANTQYVVTCRAWCAGRGRSAKVNFRAII
                     SSTNGSSYQL"
BASE COUNT          344 a          178 c          202 g          255 t
ORIGIN      
        1 cccttggcaa aatgccggtg taaccgctat ccacggtggc tcaatagtta ctaataccgt
       61 tactgctcaa caaattgcag caaataccat taccgccaac gaaatcgcag ccggcacgat
      121 tgcagctcga aatatggcag caaactcgat taatgcaagt catattgtgg ggagttcgat
      181 cactgcggat aagctaaatg taaacaattt agcggcaata tcggcaaatc ttggtaaggt
      241 aactgctggt acaattacag ggacgacaat tagtggtggg acaatttcag gtacaacaat
      301 tacaggggga ataattaaag gagcaagaat tgagggatta acaggtaaat ttactggaga
      361 acttgaaatc aaccaattga tcggaggtaa tatctatgag gctaaaactt ggacatcaaa
      421 agcaacaggg aaaagtaaaa catattcaga aacgaaaaac agttttgcat taagtgatac
      481 atattatgag tatgtatgtc aatttgtact acctgctaca aaagcgacga gaacattgta
      541 tgttgtccac actccaacag gagagagtaa aagcgaaact ttttatggta gtggtagtaa
      601 tcggacaccg acaacaatta cattaccgtc tgtaattgat attagcaata ctatttcacc
      661 taatgtatct aacccattta atgattctgg ggcaatactc attgctaata ctcaatatgt
      721 agtaacgtgt cgtgcgtggt gtgcagggcg tgggagaagt gctaaagtga attttcgagc
      781 aattatatca tctacaaatg gttcatctta tcaattatag gaggcaaata tgaaaaaaat
      841 tatactactt acaacaatta tggtttcagc ttgtacaact caatataagc aagactatac
      901 aacaaaacca accttttgtt atcaactagc ccctcaagag caattaccgg ggaaaaactg
      961 tattggctca ggagggcat
//
LOCUS       DANLVT010000233          978 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.234, whole genome shotgun sequence.
ACCESSION   DANLVT010000233 DANLVT010000000
VERSION     DANLVT010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 978)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 978)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..978
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.234"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(257..976)
                     /locus_tag="PXC99_002576"
     CDS             complement(257..976)
                     /locus_tag="PXC99_002576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418971.1"
                     /translation="MINSSFSLAFFTLTSFATAYCYGWGQAIFHGYPWWHVEIGNASM
                     ARSLAYVFGTSVILFLCYALGYSLLNKVFQLHYFRNLGWLRVIVLVSVFTVPVILTFY
                     LFTGIVPIYISFIYIFVSGVSVFFFRKRWNNTKFDLDFRKMLLGGSFALFNIFIFLYF
                     SLLSLHIGYLRAGLRTTYDYIEIENQKYYILSTNSDNGYIMGTKIRGNQSFLFFNRDT
                     HQYYHVHIEQCTDSRLCKVIV"
BASE COUNT          350 a          187 c          167 g          274 t
ORIGIN      
        1 aaataccggg cttttatttc aattggttat ccaacttgcg agagcaatta ccgcaataaa
       61 aataactaac caaataagtt gtaattttac gcttttgcgg ttgatctcct ggttgtgtaa
      121 tcggcgctgt tctaactttt gccgatatat cgctaaatcg gcttctttaa acgagaagcc
      181 acaatgtatg caatgttcta aactgtcgct aatacgcttt cgacactccg gacaacggtg
      241 taatgccata attacctcaa actattactt tgcataatcg gctatccgta cattgttcaa
      301 tatgaacatg gtagtattga tgagtatcac gattgaaaaa caagaaagat tgattacctc
      361 ttatttttgt tcccataatg tagccgttat cactgttggt ggataatatg tagtattttt
      421 gattctctat ttcgatgtaa tcataggtag ttcttagtcc ggcacgcaaa taaccaatat
      481 gcaatgagag caaactgaaa tagagaaaaa taaagatgtt aaacagggca aaacttcctc
      541 ctaatagcat ctttctaaag tccagatcaa acttggtatt attccatctc ttgcggaaga
      601 agaatacgct cacaccactt acaaaaatat agataaaaga gatataaatg ggcactatcc
      661 cggtaaataa gtaaaaagta agaataacag gcactgtaaa cacagaaacc aacacaatca
      721 cccttaacca acctagattt cggaaataat gcagctgaaa aactttattt agtaaactat
      781 aacctagtgc ataacacaag aataagatga cggaagtacc gaatacataa gccaaacttc
      841 ttgccatact ggcattgccg atttcaacat gccaccaagg gtagccatga aatatggctt
      901 gtccccaacc gtaacagtaa gcggtagcaa aactagttaa tgtaaaaaat gcaagagaaa
      961 atgaagaatt gataattt
//
LOCUS       DANLVT010000234          967 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.235, whole genome shotgun sequence.
ACCESSION   DANLVT010000234 DANLVT010000000
VERSION     DANLVT010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 967)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 967)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..967
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.235"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(25..>967)
                     /locus_tag="PXC99_002577"
     CDS             complement(25..>967)
                     /locus_tag="PXC99_002577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418972.1"
                     /translation="FHLRSLKHIKNLESNSYLDEEGRDTVNKYKAFFSIFEAEIRDAT
                     CICDNKIVTINGEVCCDIKEVARKIVIEFLNEVDIGNKVKFYYPDERHELFVELLIVL
                     ATLRIYRNRNIFFFEKGFFNFFPEFITILGTGAFNGFLDFPSLVGKVFPEIIDTINEG
                     LDLDIAIENFEVLSQEEMTECMGLYEQALIKKAEEGEIGLLNVDEINSFYEDNSELIL
                     LAKQPMVEEIIPKPDSKASSAILKFFDSNSNILIAKLKESGLQLSAVALQNDQNIARV
                     ANVVYNLLPGMVRIFVSYDTVENFLLNNRQWLINKLV"
BASE COUNT          319 a          193 c          117 g          338 t
ORIGIN      
        1 tatccatagt tcttcccctc caaattaaac taatttatta atcaaccatt ggcggttatt
       61 taataagaaa ttttctacgg tatcgtaact tacgaaaatt cttaccatgc ccggcaataa
      121 gttataaacg acatttgcta ctcgtgcgat attttggtcg ttttgtaatg ccacagcact
      181 taattgcaaa ccactttctt ttaatttagc aattaagata tttgagtttg aatcaaagaa
      241 ttttagaatt gcagaggagg ctttgctatc tggtttaggg attatctctt caaccatagg
      301 ttgtttagca agtaagatta gctcactatt atcttcataa aagctattta tttcatcaac
      361 atttaataaa ccaatttcgc cttcttcagc tttcttaatg agagcctgct catataaacc
      421 catacattca gtcatttctt cctgactcaa cacttcaaag ttctcaatcg caatatctaa
      481 atctaaaccc tcatttatcg tatcaataat ttctggaaaa acctttccta ccaaactagg
      541 gaagtctaaa aatccattaa acgcaccagt cccgagaata gtgataaatt cgggaaaaaa
      601 gttaaaaaac cccttttcaa agaagaatat atttctatta cgatatattc ttaatgttgc
      661 tagaacaatg agcagctcta caaaaagctc atgtctttca tctgggtaat aaaacttaac
      721 tttattacca atatccactt catttagaaa ttctataaca attttccttg ctacctcctt
      781 aatatcacag cacacctcac cattaattgt tacaatttta ttgtcacaaa tacatgttgc
      841 atctcgaatc tctgcttcaa aaatagagaa aaatgccttg tatttattta ccgtatctct
      901 tccttcttca tctaaataac tgttagattc tagatttttg atatgtttca aagatcttaa
      961 gtgaaag
//
LOCUS       DANLVT010000235          960 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.236, whole genome shotgun sequence.
ACCESSION   DANLVT010000235 DANLVT010000000
VERSION     DANLVT010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 960)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 960)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..960
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.236"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            223..960
                     /locus_tag="PXC99_002578"
                     /pseudo
     CDS             223..960
                     /locus_tag="PXC99_002578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524908.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication protein"
BASE COUNT          340 a          166 c          151 g          303 t
ORIGIN      
        1 gactcctcta atagtccact cttgttccat tttggaacat ttttgtatat tatttcgcct
       61 tttctttctc attgtgttct atgtaggcaa cagcattttt tgcaaagtga tcgacgagaa
      121 cattcattac ttcagtccat tttacaggtc ttcctatctt cattccaact tccatcgcta
      181 atctttctat cttgagtttt ttctctaatt taatattgaa cagagcttta tgaaatggtt
      241 gatatagaac aaacgtcagt tgattggatt gatgtaactt attcagctca tattgattcg
      301 gaatctatcc aaaaacaact tatctctttt ttccaaaaca tccatttagg acaaacacgt
      361 cgtacaagac ataacaaaga atatgacaca acggcagaat ggaattcagg ttcagaacac
      421 cgtattttaa aagtttatct aaaaggtaat gaagttcaaa aaagactaca agaagcccag
      481 cacgacttca aaaaatcacc aagtaaaaag tatctgcaaa actcaattca agtattaagt
      541 aatccaaatc tcattgaatt ttcaaaaaaa tgtgttcgtt ttgaagcaag attaaaacgt
      601 tatttagata aacatcaaat cccacgcaat ttatttgact taattaaata tcagagagat
      661 tacgaagagc agggtagaag cctgattaaa gacctatggc aagacgcatt caaagacatt
      721 attaaggctg tcggggaaag caatatgaat atttacaaca gagatcaaat tcagcgttta
      781 ttacggaaaa attatttttc aatcactcca aaaggaaata tgagctatgc aaaggctgat
      841 cgtttattca gcttttataa gaatttacta agtgatggct atagagaaac gctagattct
      901 atgccaagaa acacattttg gagatatgaa aaggatctta tggccgttgg tttaactaaa
//
LOCUS       DANLVT010000236          931 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.237, whole genome shotgun sequence.
ACCESSION   DANLVT010000236 DANLVT010000000
VERSION     DANLVT010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 931)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 931)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..931
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.237"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            50..676
                     /locus_tag="PXC99_002579"
     CDS             50..676
                     /locus_tag="PXC99_002579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HDL5418973.1"
                     /translation="MTKIKFYGNLKKFGSEFSLEVKDTAEAIRALCTQISGLREALRD
                     GVYKVRIGKQYLDPSALEKGLFYCLKKGQTIHFTPVIKGAKSGGVFNFVLGAALIGAA
                     FFTGGASIAAWGAGAKMMGMLGASMLLGGVSQMLTKMPKAPTMGNETEKESSTAFSNL
                     NNLVTQGKPVPLAYGLIRTGSLVISQGVETITIKENQPASNKKTGFRK"
     gene            725..>931
                     /locus_tag="PXC99_002580"
     CDS             725..>931
                     /locus_tag="PXC99_002580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5418974.1"
                     /translation="MNLTKAESNLNAKITEEKKARVDADKVNADKLTDITSRVANAES
                     TITNFQSTKANKSEVASLAQSSLQA"
BASE COUNT          310 a          173 c          210 g          238 t
ORIGIN      
        1 taaagaacat aaatcccctt tattttggct ataattgtaa tggtgagtca tgactaaaat
       61 taaattttac ggcaatttaa aaaaatttgg tagtgaattt agcttagaag ttaaagatac
      121 tgccgaagct atccgagcct tatgtacaca gattagcgga ttgcgtgagg cattacgaga
      181 cggtgtttat aaagtccgta tcggcaaaca gtatttagac ccgtcagccc ttgaaaaagg
      241 gcttttttat tgtctgaaga aagggcaaac cattcatttt acccctgtta tcaaaggagc
      301 gaaaagcggt ggcgtgttta attttgtttt aggtgcagcc ttgatcggag ccgcattttt
      361 tactggcggt gcttctattg cggcttgggg agctggagca aaaatgatgg gtatgttagg
      421 ggcttcgatg ttactaggag gagtttccca aatgctcacc aaaatgccaa aagcccccac
      481 aatgggtaat gaaacagaaa aagaaagctc aacggctttt tcaaatttaa ataacttggt
      541 gactcaaggc aaacctgtgc cgttggctta tggcttaatt cggaccggct cgcttgtgat
      601 atcgcaggga gttgagacga tcaccattaa agaaaaccaa ccggcaagca acaagaaaac
      661 aggctttaga aaataaggga taattaccga ttcagcacaa gcacagcaac ttaatcagtt
      721 atctgtgaac ttgaccaaag cagagagcaa tttaaatgcc aaaatcacgg aagaaaaaaa
      781 agctcgtgtt gatgcagata aagtgaatgc agataaactc acagacataa caagccgtgt
      841 tgcaaatgcg gaatcaacta ttaccaattt ccaatcaacc aaagcgaata aaagtgaggt
      901 tgcgagcctt gcacaaagtt cgttgcaggc a
//
LOCUS       DANLVT010000237          926 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.238, whole genome shotgun sequence.
ACCESSION   DANLVT010000237 DANLVT010000000
VERSION     DANLVT010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 926)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 926)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..926
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.238"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            39..218
                     /locus_tag="PXC99_002581"
     CDS             39..218
                     /locus_tag="PXC99_002581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module killer protein"
                     /protein_id="HDL5418975.1"
                     /translation="MRIATGAGYRIYYAQQGNVIYILLHGGDKSTQQADIEKAKALWA
                     ELKTTGESNGNNTNQ"
     gene            196..519
                     /locus_tag="PXC99_002582"
     CDS             196..519
                     /locus_tag="PXC99_002582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative addiction module antidote protein"
                     /protein_id="HDL5418976.1"
                     /translation="METIQINEQAAEKHGLRPFDVAEFLTDEATIQAYLAEVLKEGDQ
                     DEFLEALNNVARARGMAELAKQTGLGRESLYKTLAKGSKPRFDTIQKILGAFNLVLIP
                     QVKNG"
BASE COUNT          323 a          181 c          186 g          236 t
ORIGIN      
        1 atcataaatc tttagccggt acaggcggac tttatgaaat gcggatagca acaggagccg
       61 gatatagaat ttattacgca caacaaggaa atgtaattta tatcttgtta cacggcggcg
      121 ataaatcaac acagcaagcc gatatagaga aagcgaaagc attatgggct gaattaaaaa
      181 ctacagggga aagcaatgga aacaatacaa atcaatgaac aggcagcaga aaagcacggt
      241 ttacgccctt ttgacgtggc ggagttttta accgatgagg caactattca agcctattta
      301 gcggaagtgt taaaagaggg cgaccaagac gaatttttag aagccttgaa caatgtggca
      361 agggcaaggg gaatggcgga gcttgccaag caaacagggc tagggagaga gagcctatat
      421 aaaaccctag ccaaaggcag caaaccacgc tttgacacta ttcaaaaaat tctaggggca
      481 ttcaatttag tgcttattcc acaagtcaaa aatggctaaa acttatcact tgctacctgc
      541 caaaacctca cattcaaata gccgttgatt gatattaacg gcttttttat tgcttaattc
      601 tgtaccaatt acgcaccgat tgcggatcaa tacggggcaa gttttcgcaa aaccttaatg
      661 aaatatgacc gcttgtgatt ttgtacaaaa cgacacaaac caatgtataa aatcaaaact
      721 tgccacaaat ggcggaatga tattaaatgc cccacaaact agcagtattt cttaatgact
      781 tttcatttta agggtacatt taagggtatg tttaacaagt cttaaatgca cttctcaata
      841 ataacaagcc tcatagcata caattcaaac tcggctgggg accatttaag cgttgcatat
      901 tgtctttcac tgtctcaaat ttacta
//
LOCUS       DANLVT010000238          887 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.239, whole genome shotgun sequence.
ACCESSION   DANLVT010000238 DANLVT010000000
VERSION     DANLVT010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 887)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 887)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..887
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.239"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>887
                     /locus_tag="PXC99_002583"
     CDS             <1..>887
                     /locus_tag="PXC99_002583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418977.1"
                     /translation="FSKNNLNNEKSNNNDYYHFRNLINGLEDIIQILNSSELSLFNGK
                     VLVLTGQAGSGKSHLLGDFVQKRQNSGKYSLLLLGQDFTEKSNAWNQILSKQLNLNIT
                     PEVFLSALDSIGEMQKERVILAIDALNEGEGKSLWNNQLNGLIELVSQYPNIGLVLSV
                     RDSYQDIIFNKLNIKNQDKLCYIKHTGFIDNEFEAIQIFFPYYGLQLPSIPLLNPEFS
                     NPLYLKLFCESLKYQGETCVPKGHKGFNHIVKSYLDGIEKRICEQIEQDIGSHLVQRA
                     ANVIAKLQLEEDKYSLDYMT"
BASE COUNT          321 a          114 c          150 g          302 t
ORIGIN      
        1 ttttcaaaaa acaatctaaa caacgaaaaa tccaataata atgactatta tcattttaga
       61 aatttaatta atggtttgga agacattatt cagattttaa attcatctga attatcatta
      121 tttaatggta aagtgcttgt tttaactggt caagctggta gtggaaaatc tcatttattg
      181 ggtgattttg tccaaaaaag acaaaattct ggaaagtatt ctttgttgtt attggggcag
      241 gattttacag aaaaatccaa tgcttggaat caaatcttat ccaaacaatt aaatcttaat
      301 atcacacccg aagtattttt atccgcatta gatagtatcg gagaaatgca aaaagaacgg
      361 gttattttag ccatagacgc cttaaatgag ggtgaaggga aatcattatg gaataaccaa
      421 cttaatggat taattgagtt ggtaagtcaa tatccaaata ttggactggt tctgagtgtg
      481 cgagatagct accaagatat tatttttaat aaattaaata ttaaaaatca ggataaattg
      541 tgttatatca agcacacagg gtttatagat aatgaatttg aagccattca aatatttttt
      601 ccttattatg gcttgcaatt accaagcatt cctttgctta atccagaatt ttccaaccca
      661 ttatatttaa aattattttg tgaatctttg aagtatcaag gggaaacctg tgttccaaaa
      721 ggtcataagg gatttaatca cattgtaaaa tcttatttag atggtattga aaaacgcatt
      781 tgtgaacaaa ttgaacagga tattggttct catctggttc aaagagcagc taatgttatt
      841 gccaaattac aattggaaga agataaatat agtttggatt atatgac
//
LOCUS       DANLVT010000239          884 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.240, whole genome shotgun sequence.
ACCESSION   DANLVT010000239 DANLVT010000000
VERSION     DANLVT010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 884)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 884)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..884
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.240"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            94..765
                     /locus_tag="PXC99_002584"
     CDS             94..765
                     /locus_tag="PXC99_002584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HDL5418978.1"
                     /translation="MKKSTLAIILGGALLTGTAVAHQAGDVIFRAGAVHVKANSSSDA
                     KSKAATGIDVDLEVKNNTQLGLTATYMLADNVGIELLGATPFSHKINAKAKVLESGAE
                     VDLDRVVILKQLPPSLYAQYYFFELTAKVKPYVGAGLNYTRFYHAKSVSPAVTDLSVK
                     KHSFGPVANLGVDVKLTDNIYFNAAAWYTRIKTTAKFKAAGADHEVKVKLDPVVLFAG
                     FGVKF"
BASE COUNT          285 a          150 c          168 g          281 t
ORIGIN      
        1 gataaatatc aattcatttc tatttcattt catttacact tcgctaaagt ttacctcatt
       61 ataggtattc taattatttt tgaggatatg aaaatgaaaa aatcaacttt agcaattatt
      121 ttaggtgggg cattattaac tggaactgcg gtggcacatc aagcaggtga tgtgatattc
      181 cgtgccggtg cggtacatgt taaggcaaat tcaagttcag atgcaaaatc aaaagcagcg
      241 acaggtattg atgtagattt agaagtgaaa aacaatactc agttaggctt aactgcaact
      301 tatatgttag ccgataatgt gggtattgag ttattaggtg caaccccttt ctctcataaa
      361 attaatgcca aagccaaagt tttagaatca ggtgcagaag tagatttgga tagagttgtt
      421 atcttaaaac aattaccacc gagcctttat gcccaatact atttctttga gctaactgca
      481 aaagtaaaac cttacgttgg tgcaggttta aattacactc gcttctacca cgctaaatca
      541 gttagccctg ctgttactga cttaagtgta aaaaaacatt ctttcggacc ggtagcaaac
      601 ctaggtgttg atgtaaaatt aaccgataac atctacttca acgcggcagc ttggtacaca
      661 cgcattaaaa caaccgcaaa atttaaagca gcaggtgcag atcacgaagt aaaagtaaaa
      721 cttgatccgg ttgtcttatt tgccggtttc ggggtgaagt tctaattatt tgttgggaac
      781 gagttgggct aatcttagtg attagtcctt ttttgttaaa gttgtttgaa tatagccctt
      841 tccactttta attaaataat tgaagagata ataaaatctc acta
//
LOCUS       DANLVT010000240          805 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.242, whole genome shotgun sequence.
ACCESSION   DANLVT010000240 DANLVT010000000
VERSION     DANLVT010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 805)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 805)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.242"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..626
                     /locus_tag="PXC99_002585"
     CDS             <1..626
                     /locus_tag="PXC99_002585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDL5418979.1"
                     /translation="NTVLNTLQCDYVLFSSEDNYQVIINLKKADYPKNEANFITMTLN
                     KKFGDAKFSGANHYLRCASFFNKKSTNNNEKSVLVDFTNTKTEEDNKCYFDNLLSSYK
                     NNNVKLEPLDIKIIDELGDDKAVIAQKEIQAEIALCKRIFKQLDWSAVDFRIVKRLYR
                     KGFSENEIAVALVRFTDFEDRHCDSHDYLTRTITKAIQNYQQCSKAC"
BASE COUNT          324 a          120 c          128 g          233 t
ORIGIN      
        1 taaacacagt tttaaacaca ctacaatgcg attatgtgct gttttcttct gaagacaact
       61 accaagtcat catcaatcta aaaaaagctg attaccccaa aaatgaagca aatttcatta
      121 caatgacttt aaacaagaaa tttggtgatg caaaattttc cggtgcaaac cattacttaa
      181 gatgtgccag cttcttcaac aagaaaagca caaacaacaa tgaaaaatca gttttagttg
      241 attttacaaa cacaaagaca gaagaagaca ataaatgtta ttttgataac ttattatcta
      301 gttataaaaa taacaatgta aaacttgagc ctttagacat caaaattatt gatgagcttg
      361 gagatgataa agcagttatt gcacaaaaag aaattcaagc agaaattgct ttgtgtaaac
      421 gtatattcaa acaattagat tggtctgctg ttgattttag aattgttaag cgtctgtaca
      481 ggaaaggatt ttcagaaaat gaaattgctg ttgcacttgt cagatttact gattttgaag
      541 acagacattg tgattcacat gattatttga caagaacaat cacaaaagcc attcaaaact
      601 atcaacaatg ctcaaaagct tgttagatgt tataaggaaa gttaaaaatc aacaaaagat
      661 ttgacaaatt tatataaaat ccttattata tatgaaaagg aagcgtagcc ttaaaacgca
      721 aatgtgggtt agcacatggt caatctgaaa ctaatctagg atatttaagg tctagcagat
      781 ggcaagcatc agaaaaactt gaaac
//
LOCUS       DANLVT010000241          802 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.243, whole genome shotgun sequence.
ACCESSION   DANLVT010000241 DANLVT010000000
VERSION     DANLVT010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 802)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 802)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..802
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.243"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            130..519
                     /locus_tag="PXC99_002586"
     CDS             130..519
                     /locus_tag="PXC99_002586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5418980.1"
                     /translation="MADPIEWSIITTDCFDEWFGQQDGSTQERVLACLIYLRKFGYSL
                     GRPYADTVYQSKFPNMKELRIQNKGKPIRAFYAFDPLRQAIVLCAGEKGKDKRFYEKM
                     IALADAEFTSYLNNLEKENENVRSNAQ"
     gene            491..790
                     /locus_tag="PXC99_002587"
     CDS             491..790
                     /locus_tag="PXC99_002587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HDL5418981.1"
                     /translation="MKTLDQMLNELSPERRQKVEDMAQEMIREIQLSKLREELNLSQQ
                     QLATALGISQPAIAKLEQKDNDPRLSTLKRYIEAMGGKLKLAVELPTGDERVIRI"
BASE COUNT          279 a          138 c          153 g          232 t
ORIGIN      
        1 tggattgttg ataaaaaaag accgcttgta gtcatacaaa cggcttagta ggaagagtaa
       61 attgctttac ataatataac cttttattta tacttcattt ataaatagta agttataaaa
      121 ggttcaaaaa tggcagaccc tatagaatgg tctattatca cgactgactg ctttgatgaa
      181 tggttcggtc aacaagatgg aagtactcaa gaacgtgtct tggcttgttt aatctatctg
      241 cggaaattcg gttatagtct aggcagacct tatgctgata cagtttatca gtctaaattc
      301 cctaatatga aagagttacg cattcaaaac aaaggtaagc caattcgagc attttatgct
      361 tttgaccctt tacgccaagc gatagtactt tgtgctggcg agaaaggtaa agacaaaaga
      421 ttctatgaaa aaatgatcgc tcttgctgat gcggaattta cctcctattt aaataattta
      481 gagaaagaaa atgaaaacgt tagatcaaat gctcaatgaa ctctctcctg aacgccgcca
      541 aaaagtggaa gatatggctc aagaaatgat tagagagata caactttcaa aactaagaga
      601 agagctaaat ctctctcaac aacaattagc tacagctctc ggtatttcac agcctgctat
      661 tgctaaactt gaacagaaag ataacgatcc aagattatcc acgctcaaac gctatattga
      721 agcaatgggc ggtaagttaa aacttgccgt tgaattgcct acaggcgatg agcgtgtaat
      781 taggatttaa ttactttgtt aa
//
LOCUS       DANLVT010000242          779 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.244, whole genome shotgun sequence.
ACCESSION   DANLVT010000242 DANLVT010000000
VERSION     DANLVT010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 779)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 779)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.244"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(19..303)
                     /locus_tag="PXC99_002588"
     CDS             complement(19..303)
                     /locus_tag="PXC99_002588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010128390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418982.1"
                     /translation="MANITLSHITPKHFFETVRLLKMQEHRIYIGVDSIEVRFKQKRF
                     ESKKETDKRLEQLEHFMLFLQEIINSDIPIDLDEFIYTYHRSVRRGFYRR"
     gene            complement(321..482)
                     /locus_tag="PXC99_002589"
     CDS             complement(321..482)
                     /locus_tag="PXC99_002589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
                     /protein_id="HDL5418983.1"
                     /translation="MEKIENSSNLVLKLSLENQMLILESLEHPKEPNLVMLEALKKYS
                     LYVAKTSNK"
BASE COUNT          250 a          132 c          117 g          280 t
ORIGIN      
        1 cactcctctt tcacatcact aacgtcgata aaaacctctc cttactgacc tgtgataggt
       61 gtatataaac tcatctaaat ctataggaat atctgaatta atgatttctt gtagaaagag
      121 cataaaatgc tctaactgtt ctagtctctt atctgtttcc ttttttgact caaaacgctt
      181 ttgcttaaaa cgaacttcta tcgaatctac accgatgtaa attcgatgtt cctgcatttt
      241 gagtagtcgg acagtttcaa aaaaatgttt aggggtgatg tgagaaaggg ttatatttgc
      301 catagtttag cttgaaaacg ctatttatta cttgttttag caacatacaa agaatacttt
      361 tttaaagcct ctagcattac taaattaggc tctttaggat gttctaagct ctcaagaatt
      421 agcatttgat tttcaagaga aagctttaga acaagatttg aactattctc tattttttcc
      481 attttaatta tctcattaga tgactttcgc ataacaacag gttatgtgta aattctcgtg
      541 cagtgggaca agcccgattg tactgcactc gaattgtaac ataacctgta ggacattatg
      601 cgaaaattaa taatataagt ttttcatcaa tcggcggtat tattgaatac gccatcacat
      661 ctatgtaaca gcattaatct ataagttatt atgtaaatac actcattttg taacaaatac
      721 ttttcatttt atggtaagtt atgataacct ttagccttaa aagttaaata aggacttta
//
LOCUS       DANLVT010000243          727 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.245, whole genome shotgun sequence.
ACCESSION   DANLVT010000243 DANLVT010000000
VERSION     DANLVT010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 727)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.245"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>727
                     /locus_tag="PXC99_002590"
     CDS             <1..>727
                     /locus_tag="PXC99_002590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL5418984.1"
                     /translation="IDQLINSTSSNLWSILKELYYPYNSYSFSVLPSDLLGRIYEQFL
                     GDELVVNNNELILQPKDYNLNRDIISTPNFIIRRIIDYTVNEYCKGKNDSNIYQSKFA
                     DIACGSGAFLLEVYQRLQDILVDYYIQNDKNKLEETGVNQYKLRFEDKKNLLLNCVWG
                     VDKDFNAVKACRFGLLLKLLENESDVTIANKISILPNLDQNILWGNSLIDLSDKLTEK
                     EKLKVNPINLQEYKFNVIIGNPP"
BASE COUNT          290 a           85 c          113 g          239 t
ORIGIN      
        1 atatagatca gctaattaac tcgacaagtt caaatttatg gtctatttta aaagagttat
       61 attaccctta taattcatat tcattttcag tattaccatc agatttgctt ggtaggatat
      121 atgaacaatt tttaggtgat gagctggttg taaacaacaa cgaattaata ctccaaccaa
      181 aagattataa tttaaataga gatattatta gcacacctaa ttttattatt cgaagaataa
      241 ttgattatac agttaatgaa tattgtaagg gtaaaaatga ttctaatatt tatcagagta
      301 aatttgcaga tatagcttgt ggatcaggcg cattcttact agaagtgtat caaagattac
      361 aggatatatt agttgactac tacatccaaa atgataaaaa taaactagaa gaaactggtg
      421 taaatcaata caagttacgt tttgaagata aaaagaactt attattaaat tgcgtttggg
      481 gggtagataa agatttcaat gcagtaaaag cctgtagatt tgggttgctt ctaaaattac
      541 tagaaaatga aagcgatgta acaatcgcta ataagattag tattctgcct aacttagatc
      601 aaaatatact ctggggaaat agtttaatag atttaagtga taaattaaca gaaaaagaaa
      661 aacttaaagt aaatccaatt aacctacaag aatataaatt taatgttatt attggtaatc
      721 ctccata
//
LOCUS       DANLVT010000244          674 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.246, whole genome shotgun sequence.
ACCESSION   DANLVT010000244 DANLVT010000000
VERSION     DANLVT010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 674)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.246"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            141..>674
                     /locus_tag="PXC99_002591"
     CDS             141..>674
                     /locus_tag="PXC99_002591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL5418985.1"
                     /translation="MLNWAGKSTAYQTLQTPTSKTLTPCEEESVDFENTQNIFIEGEN
                     LDVLKALQKSYFNSVKMIYIDPPYNTGNDFIYNDSFADTKADYAEKVGDVDEHGKLKR
                     AFVRNSKENGHYHSNWLNMMLPRLHLAKNLLRDDGVIFISIDDNEQAQLKLLCDEVFG
                     EENFVAILSVENNPKGRK"
BASE COUNT          224 a          130 c          131 g          189 t
ORIGIN      
        1 ttgccaactt ttcgcttaaa gatcaacaac tttctcaatt aaaatccctt ttacctgaaa
       61 ttttcaccga aggtaaaatc gacttcgaca aattccaaca acttttttcg gataattttt
      121 ccaccgaacc tgaccgctat atgctcaact gggcaggaaa atcaacagcc tatcaaacct
      181 tacaaacccc aaccagcaaa acgctcactc cttgcgagga agagagtgtg gattttgaaa
      241 atacgcagaa tatctttatt gagggtgaaa atttagatgt attaaaagcc ctgcaaaaat
      301 cctacttcaa ttcggtcaaa atgatttata tcgatccgcc atacaataca ggcaacgatt
      361 ttatttataa cgacagtttt gccgatacca aagcagatta tgcggagaaa gtgggcgacg
      421 ttgatgaaca cggcaaattg aaacgagcct ttgttcgtaa cagcaaagaa aatgggcatt
      481 atcacagtaa ctggctgaat atgatgttgc ctcgtttgca tctcgcaaaa aatttactgc
      541 gtgatgacgg ggtgattttt atttcaattg atgataacga acaggcacag ctgaaattgc
      601 tttgtgatga agtgtttggg gaggagaatt ttgttgccat attatcagtt gaaaataatc
      661 cgaaaggtag aaag
//
LOCUS       DANLVT010000245          664 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.247, whole genome shotgun sequence.
ACCESSION   DANLVT010000245 DANLVT010000000
VERSION     DANLVT010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 664)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.247"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            133..>664
                     /locus_tag="PXC99_002592"
     CDS             133..>664
                     /locus_tag="PXC99_002592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418986.1"
                     /translation="MASALGAFLLLLVASSYADFYYTQTKQKEQLYLQAEAHQLLNYF
                     QQHFQHIGYQGSHRTDSNFDLFQQAGKSLNIVHKNCIIGFYDLNQDGCLGKRKTKTAA
                     CKLGTVNNTREVLKEIVGFKVENNEIYTFSSQLDNCVKEQCQTLLENCDGNWSKFTEA
                     NNFKTKKLDFSWRQEDN"
BASE COUNT          247 a           97 c          126 g          194 t
ORIGIN      
        1 ttaagctcag tttaaataaa gaaaatgaaa ttttgcaatt tgaacaatta ggacgggttt
       61 atgtggcagc aaaaaataaa cgtagcacct gcaaagatta gtttatctgc ttttagccta
      121 attgaagtat taatggctag tgcattaggg gcgtttttat tattgcttgt tgcttcaagt
      181 tatgccgatt tctattacac acaaaccaaa caaaaagaac agctctactt gcaagcagaa
      241 gctcaccagt tactaaacta cttccaacag cattttcaac acattggcta tcaaggctct
      301 cacagaacag acagtaattt tgatttattt cagcaagcag ggaaaagcct gaatattgtg
      361 cataaaaatt gcattattgg attttacgat ttaaaccaag atggctgttt gggaaaacgt
      421 aagacaaaaa cggccgcttg taagttagga acagtgaata ataccagaga ggtgttaaaa
      481 gaaattgttg gctttaaagt agaaaataat gaaatttata ctttttcatc gcaattagat
      541 aattgtgtga aagaacaatg ccaaacatta ttggaaaatt gcgatggaaa ttggagtaaa
      601 tttaccgaag caaataattt caaaactaag aaactggatt ttagttggag acaggaagat
      661 aact
//
LOCUS       DANLVT010000246          659 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.248, whole genome shotgun sequence.
ACCESSION   DANLVT010000246 DANLVT010000000
VERSION     DANLVT010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 659)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.248"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>659
                     /locus_tag="PXC99_002593"
     CDS             <1..>659
                     /locus_tag="PXC99_002593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5418987.1"
                     /translation="LVTAIPNFLEKVNNDFAISARNRDLYSHYLPYQGIDDWENSNFN
                     FRTLNGVYYDDNLTSTELLRKFMIQRDYNTLYALSSARTGNADSLAKNYHLVVAKMSY
                     ENLKKELSKKPDSTFNKLKKLYETNGEFLNEYILDNFRGNPLELLTVPALKESLENQE
                     SFPSRLYQKFNIFNQAIAQTTSNITKEEIDDLEKTVENFNNFKNSIDYDSDAWIFNKE
                     E"
BASE COUNT          251 a          107 c          103 g          198 t
ORIGIN      
        1 acttagtaac agccattcct aacttcctgg agaaagttaa taatgatttt gctataagtg
       61 ctagaaatag agacttatat agtcactacc ttccttatca gggtattgat gattgggaga
      121 attctaattt taactttcga acactaaatg gagtttatta tgatgataat ctaacttcaa
      181 cagaactcct gcgaaaattt atgattcaaa gagattataa cactctttat gctctaagtt
      241 ctgctcgcac aggaaatgct gatagtctgg ctaaaaatta ccatcttgta gttgcgaaaa
      301 tgtcctatga aaacctgaaa aaagaattat ccaagaaacc cgactctaca tttaataaac
      361 tgaaaaagct gtatgaaacc aatggtgaat tcttaaatga atatatttta gacaatttcc
      421 gaggaaatcc acttgaatta ttaacagtac ctgcgcttaa agaaagttta gaaaaccaag
      481 agtcattccc tagcaggctg tatcagaaat ttaatatttt caaccaggct attgcacaga
      541 ccacatcaaa cattactaaa gaagaaattg atgatttaga aaaaactgta gaaaatttca
      601 ataacttcaa aaattcaatt gattatgata gcgatgcgtg gatctttaat aaagaagaa
//
LOCUS       DANLVT010000247          648 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.249, whole genome shotgun sequence.
ACCESSION   DANLVT010000247 DANLVT010000000
VERSION     DANLVT010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 648)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.249"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>648
                     /locus_tag="PXC99_002594"
     CDS             <1..>648
                     /locus_tag="PXC99_002594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDL5418988.1"
                     /translation="ELLSLEGFKMKVVHNGLEGLNELESNQYDLVLLDVMMPVLSGVK
                     TLKRIRQKYSLPVLMLSARDDQIDRILGLELGADDYVPKPFNNRELVARMKAILRRTT
                     SRPASTDHSEQNYTENISKSLQFAGVELHSGRQQAYYQGCDLDLTGTEFALLQMLMRN
                     SGEILSRELLSLKILGKNLTPYDRAIDMHISNLRKKLPEREDGLPWFKTLRGRGYL"
BASE COUNT          224 a           94 c          130 g          200 t
ORIGIN      
        1 gaattacttt cattagaagg atttaaaatg aaagttgtgc ataatggttt agaaggctta
       61 aatgagttag agtctaatca atatgattta gtattactag atgtgatgat gccggtatta
      121 agtggcgtga aaacattaaa acgtatacga caaaaatact cattacccgt tttaatgtta
      181 agtgcaagag atgatcaaat tgatagaatc ttaggtttag aattaggggc tgacgattat
      241 gtaccgaaac cttttaataa tcgtgaacta gtcgctagaa tgaaagcgat acttcgaaga
      301 acaacctctc gcccagcttc aacagaccat tctgaacaga attatactga aaacatctct
      361 aaatcattac aatttgccgg agttgaatta cattcaggac gtcagcaggc ttattatcaa
      421 ggatgtgatc ttgatttaac ggggactgaa tttgcattat tacaaatgtt aatgcgaaac
      481 tcaggggaga ttttgtccag agaattattg agtttaaaaa ttttagggaa aaatttaacg
      541 ccttatgatc gtgcaattga tatgcatatt tctaatcttc gtaaaaaatt acccgaacgg
      601 gaagatggat taccttggtt taaaacctta agaggtcggg gttactta
//
LOCUS       DANLVT010000248          644 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.250, whole genome shotgun sequence.
ACCESSION   DANLVT010000248 DANLVT010000000
VERSION     DANLVT010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 644)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.250"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>644
                     /locus_tag="PXC99_002595"
     CDS             <1..>644
                     /locus_tag="PXC99_002595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5418989.1"
                     /translation="EIEQTRAAYDRLKRSGVASQNELRRASEATKQRVRELNAELGKT
                     SFGDKAKGFGRGLMSAGVGIAAGAAMARQPAKNQMEFDRQLAMASNTAFSDRDVKGRI
                     EGKKELLAAVQEAVKVGGGTKEDALLTLDTLIASGTMKAETAMSLLPTLQKGAVATGA
                     SSEDMAKIAISSMQQFGIKEEDIGRALDMAVAAGQAGNFELADMARWLPQQMAAG"
BASE COUNT          184 a          129 c          190 g          141 t
ORIGIN      
        1 gaaattgaac aaactcgtgc agcctatgac cgcttaaaac gctcaggtgt tgcctctcaa
       61 aatgagctac gccgtgcctc agaagccact aagcaacggg tgcgagagct gaatgcagaa
      121 ttgggtaaga caagctttgg ggataaggct aaaggatttg ggcgtggttt gatgagtgcc
      181 ggtgtcggta ttgcagcagg tgctgcaatg gctcgtcagc cagccaagaa ccaaatggag
      241 tttgaccgac agttagcgat ggcatcaaac actgcctttt ccgaccgtga tgttaaaggg
      301 cgtattgagg gcaagaaaga gttattagca gcggtgcaag aggcggttaa ggttgggggt
      361 ggaacaaaag aagatgctct tttaactctt gatacgctaa ttgcctcagg aacgatgaag
      421 gctgaaactg caatgagcct attaccaacc ttgcagaaag gtgctgtagc aacaggtgca
      481 agctccgagg atatggcaaa aattgcgatc tcctcaatgc aacaatttgg gattaaagaa
      541 gaggatattg ggcgggcatt ggatatggca gttgcagccg ggcaagcagg taactttgag
      601 cttgcagata tggctcgctg gctaccacaa caaatggccg cagg
//
LOCUS       DANLVT010000249          643 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.251, whole genome shotgun sequence.
ACCESSION   DANLVT010000249 DANLVT010000000
VERSION     DANLVT010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.251"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..493
                     /locus_tag="PXC99_002596"
     CDS             <1..493
                     /locus_tag="PXC99_002596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5418990.1"
                     /translation="ARPLNTLEVKGLTVVDDSQKPLFSEVNQALYHGLSPIEVVASRV
                     QITRAITTYTKNVTNTDDPSYLDLTTIRTLDYVRKAIQTRQRLRFPRAKNSHRIVAKV
                     RSEILDVLYQLEGEEVIENVEAWKNRLLVVRNQDPTYLDLEIPADVVNGLHVIRNKIT
                     LIL"
     gene            504..>643
                     /locus_tag="PXC99_002597"
     CDS             504..>643
                     /locus_tag="PXC99_002597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5418991.1"
                     /translation="MSIVYEGSCVLEVDGVEIEITKLDVKTVTGRKLVKTMNSSGRAR
                     GYS"
BASE COUNT          182 a          127 c          160 g          174 t
ORIGIN      
        1 ggctcgcccg ttaaataccc ttgaagttaa aggcttaacg gtcgtagatg actcgcagaa
       61 accgttattt agcgaagtaa accaagcgtt atatcacggt ttaagcccga ttgaggtggt
      121 ggcaagccgt gtgcagatta cccgtgcgat tactacatac accaaaaacg tgacgaatac
      181 tgatgaccca agctatttgg atttaaccac cattcgtacg cttgactatg tgcgtaaggc
      241 aatccaaacc cgtcagcgtt tgcgtttccc tcgtgcgaaa aactcccacc gtattgtggc
      301 aaaagtacgc tcggagattt tagatgtgct ttatcagctt gagggcgaag aggtaatcga
      361 aaatgtggaa gcgtggaaaa atcgcttatt agtggtgcgt aatcaagacc cgacttactt
      421 ggatttagaa atccctgcgg atgtggttaa tggcttgcac gttattcgta acaaaattac
      481 gttaatttta tagggggtgc tagatgtcaa ttgtttatga aggctcttgc gtgcttgagg
      541 tagatggcgt tgagattgaa attaccaaac ttgatgtaaa aaccgtaacc ggtcgcaagc
      601 tggttaaaac gatgaacagt tccggacgtg caagaggtta ttc
//
LOCUS       DANLVT010000250          643 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.252, whole genome shotgun sequence.
ACCESSION   DANLVT010000250 DANLVT010000000
VERSION     DANLVT010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.252"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..218
                     /locus_tag="PXC99_002598"
     CDS             <1..218
                     /locus_tag="PXC99_002598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418992.1"
                     /translation="IVNEPSVDCFSQEIAQFTGCHIFSSLYIAFNTQRSFKSHWDSRD
                     IFAVQMQGKKRWIIHTPTFKKTIVYAS"
     gene            208..>643
                     /locus_tag="PXC99_002599"
     CDS             208..>643
                     /locus_tag="PXC99_002599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin-like domain-containing protein"
                     /protein_id="HDL5418993.1"
                     /translation="MHRSKDMPEYAPNLDDVYMDIVLEAGDVLYLPRGWWHDPIPVGE
                     ETVHLAVGIFPAYTHNYLTWVSQNMVEKEIARASLSHYESDKELIAQLAEQTAEYIKD
                     KENYHKFIENFYDQKRVEKPLNLETLGNYQYDSISENQKISFK"
BASE COUNT          213 a           91 c          121 g          218 t
ORIGIN      
        1 gtattgtaaa tgaaccaagt gttgattgct tctctcaaga gatagctcaa tttacaggct
       61 gtcatatttt ttcaagttta tatattgcgt ttaatactca aagatctttt aaaagccatt
      121 gggatagtcg tgatattttt gcagttcaaa tgcagggtaa aaagcgttgg attattcaca
      181 ctccaacatt taaaaaaacc attgtttatg catcgtagta aagatatgcc tgaatatgct
      241 cctaatcttg atgatgtata tatggatatt gtattagaag ctggagatgt tctttattta
      301 cctcgtggct ggtggcacga tcctattcct gttggagaag aaactgtgca tttagctgta
      361 ggcatttttc ctgcttatac tcataactat ctgacttggg tatctcaaaa tatggttgag
      421 aaagaaattg cccgagcttc tttatcgcat tatgagtcag ataaagagtt gatagcacag
      481 ttggcagaac aaacagcaga atatattaaa gataaagaga attatcataa atttatagag
      541 aatttttatg atcagaagcg ggttgaaaag ccacttaatt tggaaacttt aggaaattat
      601 caatatgatt ctatttcgga aaatcaaaaa atttcattta aag
//
LOCUS       DANLVT010000251          636 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.253, whole genome shotgun sequence.
ACCESSION   DANLVT010000251 DANLVT010000000
VERSION     DANLVT010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 636)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.253"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            22..>636
                     /locus_tag="PXC99_002600"
     CDS             22..>636
                     /locus_tag="PXC99_002600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL5418994.1"
                     /translation="MGRPELERAVLSVQNQTYPCKHYVFVDGEKYHQQAADILKNFPS
                     VIVTYLPMNTGADGWVNSSINAIAPFLVKEDIICYLDDDNWFEPTHVESGVHALLEMQ
                     SDYAYSLRNFYDLDGEFLCIDTIESLGEYNCVYQEPLECNYQLGGVKGVLSINLNDCQ
                     HIDTNCYFIRSEIARLISTAWYTGIHNDRNVYKKLQELALKGNCT"
BASE COUNT          201 a           81 c          128 g          226 t
ORIGIN      
        1 gtagctgtta tcagttcaac aattggtcgt cctgaattag aaagagctgt tttaagcgta
       61 caaaatcaga cttatccttg taaacattat gtttttgttg atggagagaa atatcaccaa
      121 caagcggctg atattttaaa gaattttcca agtgttattg ttacttatct cccaatgaat
      181 accggggctg atggttgggt aaatagcagc attaatgcaa ttgcaccatt tttagtgaaa
      241 gaagatatta tttgttatct ggatgatgat aattggtttg aacctactca cgttgaatct
      301 ggtgtgcatg ctttattaga aatgcaatct gattatgctt actctttacg taatttttat
      361 gatttagatg gcgagttttt gtgtattgat acgattgaat cgttgggaga atataattgc
      421 gtttatcaag aaccattaga atgtaattat caattaggtg gtgttaaagg tgttttatca
      481 ataaatctga atgattgtca gcatattgat acgaattgct attttattcg tagtgagata
      541 gctcgcctta tcagtacggc ttggtacaca ggtattcata atgatagaaa tgtatataaa
      601 aaattacaag aattggcact aaaaggaaat tgtaca
//
LOCUS       DANLVT010000252          617 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.254, whole genome shotgun sequence.
ACCESSION   DANLVT010000252 DANLVT010000000
VERSION     DANLVT010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 617)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.254"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            34..>617
                     /locus_tag="PXC99_002601"
     CDS             34..>617
                     /locus_tag="PXC99_002601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418995.1"
                     /translation="MSKNTHSYLPLQKYHILPIYGISPELIKKSVKDCSRDREKISHC
                     TLLNACSKALGFSGGFAGFQEDYLSNLTQFMEKHGLLYLVDLTKQKYPVNDMCMTRSL
                     ALKKQDISERIFFSGKEIPKRIFTGFNFRYDMHLANGFRIGNSLKTPYSDIGICEDIN
                     EALKNPSIKIDCRDGTIRSMADVVIGRYLDKVLF"
BASE COUNT          229 a           87 c          100 g          201 t
ORIGIN      
        1 tttctaactt aattaacaaa gaggatttaa tatatgtcaa aaaacaccca tagctattta
       61 cctttacaaa aataccatat tctaccaatt tatggtattt ccccagaatt aattaaaaaa
      121 tctgttaaag attgttctag agatagagaa aaaatttctc actgtacttt gttaaatgct
      181 tgctcaaaag ctttaggatt ttctggaggc tttgcagggt ttcaagaaga ttatttatct
      241 aatttgacgc aattcatgga aaaacatggg ctcttatatc ttgtagattt aacaaaacaa
      301 aaatatccag taaatgatat gtgcatgaca aggagcttag ctctgaaaaa gcaagatata
      361 tctgaaagaa ttttctttag cggaaaggaa atccctaaga gaatatttac tggatttaat
      421 ttccgatatg atatgcattt agctaatggt tttcgtatcg gaaattcctt aaaaacccca
      481 tattctgaca taggtatatg tgaagacata aatgaagcat taaaaaatcc atcaataaaa
      541 attgattgcc gtgatggcac aatcagaagt atggcagatg tagtcatagg tagatatctt
      601 gataaagtat tgtttta
//
LOCUS       DANLVT010000253          588 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.255, whole genome shotgun sequence.
ACCESSION   DANLVT010000253 DANLVT010000000
VERSION     DANLVT010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 588)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 588)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.255"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            127..375
                     /locus_tag="PXC99_002602"
     CDS             127..375
                     /locus_tag="PXC99_002602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418996.1"
                     /translation="MISGEKMTWESLGASAIGGAIGGGIGATMKAGAVTASTLSALGG
                     GMGEGLYKSTSQGIKNSIGIKASCNQSGSDYGDGCDYQ"
     gene            387..>588
                     /locus_tag="PXC99_002603"
     CDS             387..>588
                     /locus_tag="PXC99_002603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5418997.1"
                     /translation="MKIQFPISYQEFRENYFEKKPLLMKGAISQKDLLSWKSINEILP
                     RCDLISEDAIKVMHKGKRAHKKD"
BASE COUNT          190 a           69 c          148 g          181 t
ORIGIN      
        1 taaacatcat agaggaatat ctcttatgaa agagttaaaa attgaggatt gccaatttgt
       61 ttcggcaggc ttgcacttgt tattgtagga gctgttgctg gagctgcata ttatgttggg
      121 aatggtatga tttctgggga aaaaatgact tgggagagtt tgggagcatc agctataggt
      181 ggggctattg gtggcggtat tggagcaaca atgaaagctg gtgcggtgac agcgtcaacc
      241 ttatctgctt taggtggtgg tatgggggag ggcttgtata aaagtacttc tcaaggtatc
      301 aaaaatagta ttggtataaa ggcgagttgc aatcaatcag gttcggatta tggtgatgga
      361 tgtgattatc aataagagag tatattatga aaattcaatt tccaatttct tatcaagaat
      421 ttcgtgaaaa ctattttgag aaaaaaccac ttttaatgaa aggagcaata tctcagaaag
      481 atttactttc ttggaagtca ataaatgaaa tattacctcg ctgtgattta atttctgagg
      541 atgcaattaa ggtaatgcat aaagggaaaa gggctcataa aaaagatt
//
LOCUS       DANLVT010000254          547 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.256, whole genome shotgun sequence.
ACCESSION   DANLVT010000254 DANLVT010000000
VERSION     DANLVT010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 547)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.256"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>547
                     /locus_tag="PXC99_002604"
     CDS             <1..>547
                     /locus_tag="PXC99_002604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlwI family type II restriction endonuclease"
                     /protein_id="HDL5418998.1"
                     /translation="LKQLLKTSIDVSGSIVRPFIAVVKCLTELEFLSYDEFTYFVPLI
                     RDDESAKQIISDIKLYREGKILPEEIIYKRLMQMENYKLAQEEFIASDVDENLICLVG
                     MNRKSRNYDKPYYKLYENLKKVFLDGENIYESLLNSAKNINQKPGILWRSLLFKTTNI
                     GVVRKNGKSSIHKQCPFINCKN"
BASE COUNT          211 a           68 c          103 g          165 t
ORIGIN      
        1 ctaaaacagc ttcttaaaac gagtatagat gtaagtggta gtatcgttag accgtttatt
       61 gcggttgtaa agtgcctgac ggaacttgag tttttaagtt atgacgagtt tacttatttt
      121 gttccgctaa ttagagatga cgaaagtgca aaacaaatca tatcggatat taaattatat
      181 cgagaaggta aaattttacc ggaagaaata atttataaga ggcttatgca aatggaaaac
      241 tacaaacttg cacaagaaga atttatagcc tctgatgttg atgaaaatct aatatgttta
      301 gtgggaatga atcgtaaaag cagaaactat gacaagccgt actataaatt gtatgagaat
      361 ttaaagaagg tatttcttga tggcgaaaac atttatgaat cgctattaaa ttctgcaaag
      421 aatataaatc aaaaacctgg aatattgtgg agaagtttac tctttaaaac aaccaatatt
      481 ggtgttgtaa gaaaaaatgg gaagtcttca attcacaaac aatgcccatt tataaactgt
      541 aaaaatg
//
LOCUS       DANLVT010000255          537 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.257, whole genome shotgun sequence.
ACCESSION   DANLVT010000255 DANLVT010000000
VERSION     DANLVT010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 537)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.257"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..519
                     /locus_tag="PXC99_002605"
     CDS             <1..519
                     /locus_tag="PXC99_002605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5418999.1"
                     /translation="ADYTYFKKCLKKDNELYWYFVIRFMAATGSRVSELIQIKCEHIK
                     IGYLDLYSKGGKLRRIYIPKSLQKECSEWLRLNNKHNGFIFLNKYGDRITTRGIASQL
                     KVFARRYKLDPKIVYPHSFRHRFAKSFLERFNDIAFLADLMGHESIETTRIYLRKTST
                     EQQEIVNKIIDW"
BASE COUNT          196 a           71 c           95 g          175 t
ORIGIN      
        1 gctgattata cttattttaa aaaatgccta aaaaaagata acgaactata ctggtatttt
       61 gtgattcgtt ttatggcagc aacaggttcg agagtaagtg aattaatcca gataaaatgt
      121 gaacatatta aaataggcta tttagacctc tattctaaag gtggaaaatt aagacgaatt
      181 tacatcccaa aatctctgca aaaagagtgt tctgaatggt tgagattaaa taataagcat
      241 aatggattta ttttcttaaa taaatatggt gatagaatta ctactcgtgg cattgccagc
      301 caattaaaag tatttgctag acgctataaa ttagatccta aaattgttta tccacattca
      361 tttcgccatc gttttgcaaa aagtttttta gaacgattta atgatattgc ttttcttgct
      421 gatttaatgg ggcacgaaag catagaaacc acaaggatct atttacgaaa aacaagcaca
      481 gaacagcagg aaattgtgaa taaaattatt gattggtaat ttttaagggg cgtgttt
//
LOCUS       DANLVT010000256          535 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.258, whole genome shotgun sequence.
ACCESSION   DANLVT010000256 DANLVT010000000
VERSION     DANLVT010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.258"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
BASE COUNT          181 a           72 c           82 g          200 t
ORIGIN      
        1 ggacaaaata gtaaactgtt cattttttga taggacaaaa acccctgaaa ataggacaaa
       61 aacaccctaa aataggacaa tttcagcgtt aataggacaa aaattcaata ttaaatcatt
      121 gatatataaa ggtttagtaa aaattgtcct aattgtccta taaaaaaaca gctatttttc
      181 tatatgattt ttttatgatt gtttggcgga attttggttg aaatttaaat gtaaattata
      241 tgcttcataa tttcatattt tatgggtttt gtgattgtga tcataataca cattaaagag
      301 gtttcaggac gatataaaaa aggctctcta aatagattag aaagccttga tattgtatgc
      361 ggttatccca tcgtggttga aaaacttaga gtaaggttct ttattatctt caacaagacg
      421 ataagcctct gatacatacc ttttacatct ttttctttgc ttattaagtt gtctatctgc
      481 cagattttta gctgttccta ttttctttaa ttcatcggaa gtcagtgatt ttaat
//
LOCUS       DANLVT010000257          530 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.259, whole genome shotgun sequence.
ACCESSION   DANLVT010000257 DANLVT010000000
VERSION     DANLVT010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 530)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.259"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
BASE COUNT          174 a           82 c          106 g          168 t
ORIGIN      
        1 agaatgaaat gaaagaacca tcaattttac aattaagctt agtagttgga gggaattctg
       61 aaaataaggc taatcaacca gatcttgtat cttatggcgt tgcttttgct acagggtttg
      121 caagaggggg gctttaggcg gtttatccag tacttctgtt aatttagccc ttgatttagc
      181 gaggagccta cctattacaa tacatgaaaa ttctttacct agcggtgtaa aagaattaat
      241 tccatcatct ttaccaataa agcctacgtt tggagttcca ggtagaacga ataataacca
      301 atctggctca aactacgatt gtggtgatgg tacagattat caaggctagt ggagatgaaa
      361 atgaaaattc aatttccaat ttcttatcaa gaatttcgtg aaagttattc tgagaaacaa
      421 ccacttttaa tgaaaggtgc tatagagtag caagatttac tttcttggaa ggctatcaat
      481 gaagtattac ctcgttgtga tttactttct gaagatgcaa ttaaagtaat
//
LOCUS       DANLVT010000258          500 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.260, whole genome shotgun sequence.
ACCESSION   DANLVT010000258 DANLVT010000000
VERSION     DANLVT010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.260"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
BASE COUNT          151 a           81 c           91 g          177 t
ORIGIN      
        1 agtgagctaa aaaagatttt aactcacttt catttcgtag gctcaaatta gacctactac
       61 gccgatataa aaagttggtc tttttatatc aaagctaagc tcttaacaac gagtagtaga
      121 ttctctaata tgtttagctg taactttcat tggcttttgt tgcgctgtag tgtttttcat
      181 attgttctcc agattttgtg agtaattagt aagacctttt cttttgaaaa ggaccgagct
      241 ttcaaagtgg tctgattacc tattgagcaa tcagcttgct tttcaagccc catgtcatta
      301 tatcataacc attgttttta gtcaatacca ttttggggaa tgcatggaag gcgagtacaa
      361 attgaaggct gatgtcacga tctatcatga tacgccttat acaaaagttc tctttggaag
      421 tacatatatt gagattttag acgatgacca gtattacttt tcgattttag aaaaacgaag
      481 atggaagtta gaaaatttac
//
LOCUS       DANLVT010000259          498 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.261, whole genome shotgun sequence.
ACCESSION   DANLVT010000259 DANLVT010000000
VERSION     DANLVT010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 498)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.261"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(181..420)
                     /locus_tag="PXC99_002606"
                     /pseudo
     CDS             complement(181..420)
                     /locus_tag="PXC99_002606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651213.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
BASE COUNT          157 a          103 c           68 g          170 t
ORIGIN      
        1 aaaataatgg cataagtgac tcacttatgc cattttttat atgctttaac gtttattaaa
       61 aatcttaaaa atattgttgg cttcctctaa ataatgcaag attttccgca ctcatattgc
      121 cgttaccaac acctgctacg acaatacctt gatagcctac atctaacaag gctttagtgg
      181 gccaattttc acaatctgct cacctttgat attcgccaat gttttcattt ctggcactgc
      241 ttcaattaag gtttcgatat tcaattgccc tgcttgataa gcactactat ttgcattctg
      301 ctgactacca gcaatcgttc cgcctgtcgc taaaatagtg atattaggta attctgccgc
      361 attagctgtt acaaataagc cacctaacat tgctgctaat gctaattttt tgaatttcat
      421 ataaggctcc ttaattaaaa aaactaaaga cagataatac cgataaatca atgtaaatta
      481 tttgatctga tacataaa
//
LOCUS       DANLVT010000260          495 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.262, whole genome shotgun sequence.
ACCESSION   DANLVT010000260 DANLVT010000000
VERSION     DANLVT010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 495)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 495)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.262"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..234
                     /locus_tag="PXC99_002607"
     CDS             <1..234
                     /locus_tag="PXC99_002607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5419000.1"
                     /translation="ATRAVAECFNQHTLVDLLHRYCSGDWGNLCDNDKKANVKAIERG
                     GRILARYDVEDETLYVITEADRSYTTILFPYEY"
BASE COUNT          162 a           78 c           87 g          168 t
ORIGIN      
        1 gcaactcgtg cagttgctga atgtttcaat caacatacat tagttgatct acttcatcgc
       61 tactgcagtg gtgattgggg aaatttgtgt gataacgaca agaaagccaa tgtgaaagct
      121 attgaacgcg gaggacgcat tttagctcgc tatgatgtgg aagatgaaac actttatgta
      181 atcacagagg ctgatcgtag ttacactaca attttatttc cttatgaata ttaatggagc
      241 ttccatttat accctacatt tttatgttat caaacgccgt caaatgatgg cgtttttcta
      301 ttttatatct ttcgatttta tagttgtttc aatatgcaat tttaattatt tttcctcttt
      361 gtagaacaat tacaaatgaa ttaagcatgg aaaaacaaat atataacaga agaaaaacat
      421 tattcggcaa tgaggagacg gctgcacttt attatgcagc taaagacatt atctttgaat
      481 atgaaattta caaac
//
LOCUS       DANLVT010000261          462 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.263, whole genome shotgun sequence.
ACCESSION   DANLVT010000261 DANLVT010000000
VERSION     DANLVT010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 462)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 462)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..462
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.263"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..388
                     /locus_tag="PXC99_002608"
     CDS             <1..388
                     /locus_tag="PXC99_002608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="H-NS histone family protein"
                     /protein_id="HDL5419001.1"
                     /translation="SLLNIRSLRALAKDLALEQLKSISEKLDIIIAEKEEEMKQEELE
                     KLKQLESLNKYREMLKQDGLSIDELAELLADKVIKTRKALSPRPAKYKFVDANGNEKT
                     WTGQGRTPKALQDALDSGKKLEDFAI"
BASE COUNT          190 a           57 c           83 g          132 t
ORIGIN      
        1 aagtcttttg aatatccgca gcttaagggc tttggctaaa gatttagcat tagagcaatt
       61 aaaatcaatt tctgagaaat tagatataat tattgctgaa aaagaagaag aaatgaaaca
      121 ggaagaatta gaaaaactaa aacaactaga aagtttaaat aaatatagag aaatgctaaa
      181 acaagatggg ttatctattg atgaattagc tgaattatta gcagataaag taatcaaaac
      241 ccgcaaagca ctatcacctc gcccggctaa atataaattt gttgatgcta acggcaatga
      301 gaaaacttgg acaggtcaag gcagaacacc aaaggcatta caagatgctt tagatagtgg
      361 taaaaaatta gaagattttg ctatttaatt ggctataact atttttagtt taaagagaac
      421 tcaattgagt tctcttattt ttataatagg aaatgaaatg ct
//
LOCUS       DANLVT010000262          453 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.264, whole genome shotgun sequence.
ACCESSION   DANLVT010000262 DANLVT010000000
VERSION     DANLVT010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 453)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.264"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            122..>453
                     /locus_tag="PXC99_002609"
     CDS             122..>453
                     /locus_tag="PXC99_002609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-activating lysine-acyltransferase"
                     /protein_id="HDL5419002.1"
                     /translation="MNQSYFNLLGNITWLWMNSSLHKEWSCELLARNVIPAIENEQYM
                     LLIDNGIPIAYCSWADLNLETEVKYIKDINSLTPEEWQSGDRRWIIDWVAPFGHSQLL
                     YKKMCQKYP"
BASE COUNT          171 a           73 c           76 g          133 t
ORIGIN      
        1 aatacaattt aagctacaaa aaacaacaaa aaacaacaaa aaacacgaca ataagatcga
       61 gtaatgatta tattatgtta taatttttga cctaatttag aataattatc gagtgcaaat
      121 tatgaatcaa tcttatttta acttactagg aaacattact tggctatgga tgaactcctc
      181 cctccacaaa gaatggagct gtgaactact agcacgcaat gtgattcctg caattgaaaa
      241 tgaacaatat atgctactta tagataacgg tattccgatc gcttattgta gttgggcaga
      301 tttaaacctt gagactgagg tgaaatatat taaggatatt aattcgttaa caccagaaga
      361 atggcagtct ggtgacagac gctggattat tgattgggta gcaccattcg gacattctca
      421 attactttat aaaaaaatgt gtcagaaata ccc
//
LOCUS       DANLVT010000263          450 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.265, whole genome shotgun sequence.
ACCESSION   DANLVT010000263 DANLVT010000000
VERSION     DANLVT010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 450)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 450)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.265"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>450
                     /locus_tag="PXC99_002610"
     CDS             <1..>450
                     /locus_tag="PXC99_002610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5419003.1"
                     /translation="KFFSRKQPVMQSAFNHQKRIVKWLWAEFWDKNIISMTLRIDGYR
                     NANLWHYLRYQSRIEVLYKIANEHPNLLPLLAYVKPEYWKCSDLFSYQNWVRSRDKQP
                     FILYAKCQDKMLCESKGQWRWLKKQSRIVVDQCFLHVNQWQLLTEIQ"
BASE COUNT          160 a           58 c           88 g          144 t
ORIGIN      
        1 aaagtttttc tctagaaagc aacctgttat gcaaagtgca tttaatcatc aaaaaaggat
       61 tgttaagtgg ttatgggctg aattttggga taagaatatt atctcgatga cacttagaat
      121 tgatggttat agaaatgcta acttatggca ttatttacgt tatcaatcac ggattgaggt
      181 attgtataaa atagcaaatg aacacccgaa tctactacca ttattagcct atgttaaacc
      241 tgagtactgg aaatgctcgg acttatttag ttatcaaaat tgggtaagaa gccgtgataa
      301 acagcctttt attttgtatg ctaaatgcca agataagatg ttatgtgaat caaaggggca
      361 atggagatgg ttaaaaaaac agtcgagaat agttgtagat caatgttttc tacatgttaa
      421 tcaatggcag ttattaacag aaattcaaat
//
LOCUS       DANLVT010000264          448 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.266, whole genome shotgun sequence.
ACCESSION   DANLVT010000264 DANLVT010000000
VERSION     DANLVT010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 448)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 448)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..448
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.266"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            4..>448
                     /locus_tag="PXC99_002611"
     CDS             4..>448
                     /locus_tag="PXC99_002611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005758802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HDL5419004.1"
                     /translation="MSSEQLADIRQQMLKFAQLQLQDIALAEDMVQEAFVNAIKNIDN
                     FQRKAALKTWIFAILKNKIIDYLRKKDRIVLESDLADDDEENHFFDNYGHWKEEYYPS
                     SWQEEAVYSKEFWILFEVCLSNLPAKQARVFMMREYLEATSDEICR"
BASE COUNT          159 a           58 c           88 g          143 t
ORIGIN      
        1 gatatttcat cggaacagct tgccgatatt cgtcagcaaa tgttgaaatt tgctcagtta
       61 caattacaag atattgctct tgctgaagat atggttcaag aagcattcgt taatgcaata
      121 aaaaatattg ataatttcca gcgtaaagca gcattgaaaa cctggatatt tgctattcta
      181 aaaaataaaa ttattgatta tttacgtaaa aaagatcgta tagtactaga aagtgatcta
      241 gctgatgatg acgaagagaa tcactttttt gataattatg ggcattggaa agaagaatat
      301 tatccttcta gctggcagga agaagctgtt tattccaaag aattttggat attatttgaa
      361 gtttgcttaa gcaatttacc tgcaaaacaa gctagggtat ttatgatgag ggaatattta
      421 gaggcaacct cagatgaaat ttgtcgag
//
LOCUS       DANLVT010000265          448 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.267, whole genome shotgun sequence.
ACCESSION   DANLVT010000265 DANLVT010000000
VERSION     DANLVT010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 448)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 448)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..448
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.267"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            36..>448
                     /locus_tag="PXC99_002612"
     CDS             36..>448
                     /locus_tag="PXC99_002612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraI domain-containing protein"
                     /protein_id="HDL5419005.1"
                     /translation="MHSILKKILGKSKSSSQSSVKSDNVFAIEQDSEGWLYPKNASQL
                     LNTELRQKYLGLLWQQVSMNRQMFEALYQQPIERYAEMVQLLPASESHHHSHIGGMLD
                     HGLEVIAFSAKVRQNYILPPNVAPEEQSKQRDAWTA"
BASE COUNT          136 a          103 c           84 g          125 t
ORIGIN      
        1 ttcaacgcaa acatcatctt tttcggtcta tttcaatgca ctcaattctc aaaaaaattc
       61 ttggcaaaag taaatcctcg tctcaaagtt cggttaaatc tgacaatgtt ttcgctattg
      121 agcaggatag tgagggctgg ttatatccga aaaatgcctc ccaactactt aatacggaat
      181 tacgccaaaa atatctgggt ctactttggc aacaggtatc aatgaaccgt caaatgtttg
      241 aggcacttta tcaacagcca atagagcgtt atgccgaaat ggtgcaactg ttacccgctt
      301 ccgagtcaca tcatcattca catatcggcg gaatgctcga tcacggtttg gaagttattg
      361 ctttttcagc caaagtccgt caaaactata tattgccacc gaatgtcgca cctgaagaac
      421 aatctaagca acgagacgct tggactgc
//
LOCUS       DANLVT010000266          428 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.268, whole genome shotgun sequence.
ACCESSION   DANLVT010000266 DANLVT010000000
VERSION     DANLVT010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 428)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.268"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..308)
                     /locus_tag="PXC99_002613"
     CDS             complement(<1..308)
                     /locus_tag="PXC99_002613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5419006.1"
                     /translation="MKLNNISKLLVFGFFGSLFFERSLWMIYLHGKGFTISEISFFQI
                     GLNVSMFIFEIPSGFISDRFGRKSAMLLGSAFTIIYFMGMLFANSAFSIFLFFVIYGF
                     G"
BASE COUNT          180 a           77 c           36 g          135 t
ORIGIN      
        1 ccaaatccat aaataacaaa gaataaaaat atagaaaaag cagaatttgc aaataacatc
       61 cccataaaat aaattatagt gaacgcacta cctaataaca tagcactttt acgaccaaat
      121 ctatcagaaa taaaaccaga tgggatttca aaaataaaca ttgatacatt tagaccgatt
      181 tggaaaaatg atatttctga tatcgtaaac ccttttccat gcaagtatat catccacagg
      241 cttctttcaa agaataaact tccaaaaaaa ccaaaaacaa gcaattttga tatattattt
      301 aatttcatag ataaaccttt tcatatcata taactctaga cattcccgta taaaatctgt
      361 atcttcttca ttaaactcac tttttaatga atcaataatt tcatctttat ttatactcga
      421 tttaatat
//
LOCUS       DANLVT010000267          426 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.269, whole genome shotgun sequence.
ACCESSION   DANLVT010000267 DANLVT010000000
VERSION     DANLVT010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 426)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 426)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.269"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(208..>426)
                     /locus_tag="PXC99_002614"
     CDS             complement(208..>426)
                     /locus_tag="PXC99_002614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5419007.1"
                     /translation="LNAKYVVGTGDDTDGEVTNFVIITSEYKYIDAQSAKAITDAPLT
                     KEDIGKTPTQIMLGRIYKYLKETGQIVV"
BASE COUNT          125 a           85 c           67 g          149 t
ORIGIN      
        1 ttttaaataa aacgttccga aaaaacattg aatttcatta aaaaattcct ttatttatca
       61 aataaatgcg atttgtttcg gaacgttttt ttaatgctta ttttgcaaca tacggattat
      121 caatggaaag cgttgctgta gacattgtgc ctcctagtac aaaaaaaccg cttggtttcc
      181 ctaagcggtt ctaatctata agaactatta aactacaatc tgccccgtct cttttaagta
      241 cttatagata cgccctaaca taatctgcgt tggcgttttg ccaatatcct cttttgttag
      301 cggtgcatca gtaatcgctt tggctgattg agcatcaata tatttgtact cacttgtgat
      361 gattacaaag tttgttacct cgccatcggt atcatcacct gtgccaacaa catacttagc
      421 attgag
//
LOCUS       DANLVT010000268          417 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.270, whole genome shotgun sequence.
ACCESSION   DANLVT010000268 DANLVT010000000
VERSION     DANLVT010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.270"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            73..>417
                     /locus_tag="PXC99_002615"
     CDS             73..>417
                     /locus_tag="PXC99_002615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlwI family type II restriction endonuclease"
                     /protein_id="HDL5419008.1"
                     /translation="MSNKSIPYQSFCWVIGTTSFRTAKLNLKIEAQLLLLDEFFNEVI
                     KESSWNWNNELQEKYYDFMKDRAFLTGEAKRKDKDAREKTSGLVDIGLITEDRLITDA
                     GRELLKVTSSGDF"
BASE COUNT          167 a           42 c           88 g          120 t
ORIGIN      
        1 agaaaagata aagtcagtat atctgaagaa gttttaatta ctaactatcc tgtgaattgg
       61 aggaataagt aaatgtctaa taaaagtatt ccatatcaaa gtttttgttg ggttatagga
      121 actacaagtt ttagaactgc aaaactaaat ttaaaaatcg aggcacagtt gttgcttctt
      181 gatgagtttt ttaatgaggt cataaaggaa tcaagttgga actggaacaa tgaattgcaa
      241 gaaaaatatt atgattttat gaaagataga gctttcctaa caggagaagc aaaaagaaaa
      301 gacaaagatg ccagagaaaa aacatcagga ttggttgata ttggtttaat tacagaagat
      361 agattgatta cggatgcagg aagagaactc cttaaagtaa caagtagtgg ggatttt
//
LOCUS       DANLVT010000269          394 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.271, whole genome shotgun sequence.
ACCESSION   DANLVT010000269 DANLVT010000000
VERSION     DANLVT010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 394)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 394)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.271"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
BASE COUNT          120 a           62 c           69 g          143 t
ORIGIN      
        1 gtcttgtgtt taatgagagg gttgttagaa taaaacatga gagtttcctt tttgtttaga
       61 ttgatttttg acactcatat tctaaacggg aaactctcac tttttagagt gaattgtcag
      121 atcaagtctg atcttctaca cctgatatta atttgcctga tctggaagtt cctacggcgg
      181 aatcaattat atcccctttt aaaaaattgc taccagattt acagaatttt gaactgaata
      241 aacgaaccgc acaatgccct gtttggacat ttaatattga atacttgaga tttcattatg
      301 aacttagaga acattgcgat ttgatagaac cacataaaga aatcttaaag ctattattcg
      361 gcattatttg ggcgtttatt gctttacgtt atgt
//
LOCUS       DANLVT010000270          393 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.272, whole genome shotgun sequence.
ACCESSION   DANLVT010000270 DANLVT010000000
VERSION     DANLVT010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 393)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 393)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..393
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.272"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(158..>393)
                     /locus_tag="PXC99_002616"
     CDS             complement(158..>393)
                     /locus_tag="PXC99_002616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5419009.1"
                     /translation="LRHSHVAYLIEQGFSPVVIAERLGHESISITLNYAHLYLGRDKT
                     EKKESVIGAIKKHKRKIDKTIEQSHSMSNDMEL"
BASE COUNT          117 a           79 c           44 g          153 t
ORIGIN      
        1 taagacttgc cataatcccc ccttgccaca tttcaatcta ttcagtagac attatagcat
       61 attttacctg ttttttctat atttttggct aaaaacatga tgctaattgc ttcaaaaaaa
      121 tggagagtat caaatttata atactctcca tgtatctcta tagctccata tcgttactca
      181 tactatgact ctgctcaatt gttttatcta ttttcctttt atgtttctta attgctccaa
      241 taactgattc ctttttctct gttttatccc taccaagata taaatgtgca tagtttaagg
      301 ttattgagat actttcatga cctaatcttt ctgcaattac cacaggagaa aatccttgct
      361 ctatcaaata agcaacatga gaatgtctta aat
//
LOCUS       DANLVT010000271          390 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.273, whole genome shotgun sequence.
ACCESSION   DANLVT010000271 DANLVT010000000
VERSION     DANLVT010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 390)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.273"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..>390)
                     /locus_tag="PXC99_002617"
     CDS             complement(<1..>390)
                     /locus_tag="PXC99_002617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDL5419010.1"
                     /translation="YIARMDADDISLPTRLSEQILYLEENHLDLCGCNALLFSEHGNL
                     GLTNKLNSHEALEKLMVAGDIGIIHPTFLARRKVFVESGGYNPLALHAEDMEFIAHIL
                     SMGFRLGNNPKVLFKYRFSTNSVTRRNA"
BASE COUNT          137 a           79 c           50 g          124 t
ORIGIN      
        1 agcatttctt ctagtaacgc tatttgtaga aaacctatat ttgaataata ccttaggatt
       61 attccctaat ctaaatccca ttgataaaat atgggcaata aattccatat cttccgcatg
      121 taaagctaag ggattatacc ctccagattc aacaaatact tttctccttg ctaaaaaagt
      181 agggtgaatt attccaatat caccagccac cataagcttt tctaaagcct catgactatt
      241 caacttattt gtaagaccaa ggttgccatg ttcagaaaaa agcaaagcat tacaaccgca
      301 taagtctaaa tggttttctt ctaaatataa aatttgctct gacaatctag taggtaaaga
      361 tatatcatca gcatccattc tcgctatata
//
LOCUS       DANLVT010000272          388 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.274, whole genome shotgun sequence.
ACCESSION   DANLVT010000272 DANLVT010000000
VERSION     DANLVT010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 388)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.274"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            11..>388
                     /locus_tag="PXC99_002618"
     CDS             11..>388
                     /locus_tag="PXC99_002618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Type II secretory pathway, pseudopilin PulG"
                     /protein_id="HDL5419011.1"
                     /translation="MYKAITLIEILTTITIMVIAVYFISPVIFTLQDRIALHSEIENI
                     QSFIQQIQTKARYTKRNYTLTLSQRNNQWCMIAVIKPINTSKQIICDCLNKHFCDLGK
                     EYHLYTPTHQQIVLKNKSLYPKSF"
BASE COUNT          134 a           66 c           54 g          134 t
ORIGIN      
        1 gggtattttt atgtataaag ccatcacatt aattgaaata ctaaccacta tcactattat
       61 ggtgatcgct gtttatttta tctcgccggt tatttttaca ctgcaagatc gaattgcact
      121 tcatagtgaa attgaaaata tccaatcttt tattcagcaa atccaaacta aagcacgtta
      181 taccaaacgt aattatacct taaccctttc tcagcggaat aatcagtggt gtatgattgc
      241 ggtaattaag ccaatcaata ctagcaaaca aattatttgt gattgtttga ataaacattt
      301 ttgtgattta ggaaaagaat atcatcttta tacgccgact catcagcaga ttgtattaaa
      361 aaataaaagt ttatatccga aatccttt
//
LOCUS       DANLVT010000273          383 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.276, whole genome shotgun sequence.
ACCESSION   DANLVT010000273 DANLVT010000000
VERSION     DANLVT010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 383)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 383)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.276"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>383
                     /locus_tag="PXC99_002619"
     CDS             <1..>383
                     /locus_tag="PXC99_002619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL5419012.1"
                     /translation="ERELTRPYFETNRNQPLYTFRDVKANSFVIYPYVKKDKKIELIN
                     ISILKEKYPYGFAFLTKVKSKLLQRNIWPPIMENDWYKYGRHQALENCDSAPKIIVGI
                     LSKGYKYSVDHEGVFISSGGTAGYS"
BASE COUNT          150 a           54 c           62 g          117 t
ORIGIN      
        1 tagaaagaga attaactaga ccatattttg aaactaatag aaatcaaccc ttatatactt
       61 ttagagatgt caaagctaat agttttgtaa tttaccctta tgtaaaaaaa gataaaaaaa
      121 tagaattgat taatatctcc atattaaaag agaaataccc ttatggattt gcttttctaa
      181 caaaagttaa gtcaaaatta ttacaaagaa atatatggcc cccgataatg gaaaacgatt
      241 ggtacaaata cggtcgccat caagctttag agaattgcga ctccgcccct aaaattattg
      301 ttggcattct atcaaaagga tataaatata gtgttgatca tgaaggggta tttatatcat
      361 caggtggaac tgctggatat agt
//
LOCUS       DANLVT010000274          370 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.277, whole genome shotgun sequence.
ACCESSION   DANLVT010000274 DANLVT010000000
VERSION     DANLVT010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 370)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 370)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.277"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
BASE COUNT          117 a           71 c           56 g          126 t
ORIGIN      
        1 gttcaagtct cgaccaggca ccatttgact aaatttagtt caacagagct aaacgaaaaa
       61 accttagaaa gcctgtaaaa tcaacgttta caggcttttt tgttgtttta gctcaatggc
      121 actaaacatt tcatatcgca aattttaagt agcctagcaa attttccgcc aaatatgacc
      181 gcttgtaatg ccgttaggtt attgcctggc ggcctttttg ttacagctct tatatttttt
      241 acaccaaagt tcagaaaaag tcacttttat cactaacatt aagatgaaac cttgatacaa
      301 agcttgggct tcggtgatat ttaaaaaata tcactttttt caataattgt gacaaatctc
      361 tcagattttt
//
LOCUS       DANLVT010000275          361 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.278, whole genome shotgun sequence.
ACCESSION   DANLVT010000275 DANLVT010000000
VERSION     DANLVT010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.278"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>361
                     /locus_tag="PXC99_002620"
     CDS             <1..>361
                     /locus_tag="PXC99_002620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5419013.1"
                     /translation="AGQERCIADEVPFEIPQNWIWVRLENYSLNHDRRRKPVSVAQRS
                     QQNKLYDYYGATGAIDKVASYIFDGKFILIGEDGGNFFTKKDVAFIVEGKFWANNHVH
                     VLSVDFNLEKYFCYYLNA"
BASE COUNT          121 a           38 c           79 g          123 t
ORIGIN      
        1 gcaggtcagg aacggtgtat cgccgatgaa gtgccatttg agattcctca aaattggatt
       61 tgggtgaggt tggaaaatta ttctttaaat catgatagaa gaagaaaacc agtatcagtt
      121 gcacagcgta gccaacaaaa taaattgtat gactattatg gagcgactgg agcaatagat
      181 aaagtggcaa gctatatttt tgatggtaag tttattttaa ttggagaaga tggaggtaat
      241 ttcttcacta aaaaagacgt tgcttttatt gttgaaggta aattttgggc aaataatcat
      301 gttcatgtat tatcagttga ttttaatttg gaaaaatatt tttgttatta tttaaatgca
      361 t
//
LOCUS       DANLVT010000276          354 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.279, whole genome shotgun sequence.
ACCESSION   DANLVT010000276 DANLVT010000000
VERSION     DANLVT010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.279"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            31..107
                     /locus_tag="PXC99_002621"
     tRNA            31..107
                     /locus_tag="PXC99_002621"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:65..67,aa:Ile,seq:gat)
     gene            164..239
                     /locus_tag="PXC99_002622"
     tRNA            164..239
                     /locus_tag="PXC99_002622"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:197..199,aa:Ala,seq:tgc)
BASE COUNT          107 a           75 c           90 g           82 t
ORIGIN      
        1 aagaagacaa aaaaccgaag gtcatccgtt gggtctgtag ctcaggtggt tagagcgcac
       61 ccctgataag ggtgaggtcg gtggttcaag tccactcaga cccaccactc agaaggcaag
      121 cgaaagcgaa gcgactatga gtgaagaaaa cggaagatga aatggggata tagctcagct
      181 gggagagcgc ctgccttgca cgcaggaggt cagcggttcg atcccgctta tctccaccaa
      241 tcatcgtgac tttatcatca tacctaagat tacaagcggt taaaaatacc ggattatttg
      301 caattttagg tatgatgata ggcgaaagcc attatctttg ttctttaaca atat
//
LOCUS       DANLVT010000277          353 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.280, whole genome shotgun sequence.
ACCESSION   DANLVT010000277 DANLVT010000000
VERSION     DANLVT010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 353)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 353)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.280"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>353
                     /locus_tag="PXC99_002623"
     CDS             <1..>353
                     /locus_tag="PXC99_002623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HDL5419014.1"
                     /translation="PYNSRQYCDAYHLLENVARWEKPKVYGVARKMDRTSLKSDYCMI
                     AATKAFEELIENADAKYILLSYNNMSDKGNDRSNAKISDEDIMKILSKKGKVIVFESD
                     YKSFSTGKSDIQDNK"
BASE COUNT          140 a           38 c           70 g          105 t
ORIGIN      
        1 tccatataat tcaagacaat attgtgatgc atatcattta cttgaaaatg tggcacgatg
       61 ggaaaaacct aaagtttatg gtgttgcaag aaagatggat agaacttcgc ttaaaagtga
      121 ttattgtatg attgcagcta caaaagcatt tgaggagctt attgaaaatg ctgatgcaaa
      181 atatattttg ctttcatata acaatatgtc agacaaggga aatgatagat ccaatgcgaa
      241 aatatcggat gaagatatta tgaaaattct tagcaaaaag ggaaaagtaa ttgtatttga
      301 atcggattat aagagttttt caactgggaa atcagatata caagataata aag
//
LOCUS       DANLVT010000278          343 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.281, whole genome shotgun sequence.
ACCESSION   DANLVT010000278 DANLVT010000000
VERSION     DANLVT010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 343)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 343)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.281"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..298
                     /locus_tag="PXC99_002624"
     CDS             <1..298
                     /locus_tag="PXC99_002624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF883 domain-containing protein"
                     /protein_id="HDL5419015.1"
                     /translation="DAKREELTNEIRDILKNAEELFNETSDSSTEEYKKLKDKLAKQF
                     DDVKDRFATLKDDTVDSARTVVKQTDTLVQDNPYKAITVAGVVGLLLGVLISRR"
BASE COUNT          128 a           43 c           67 g          105 t
ORIGIN      
        1 agatgcaaaa cgtgaagagt taacaaacga gattcgcgat attttgaaaa atgcagagga
       61 attatttaat gaaacatctg attcttctac ggaggaatat aaaaagttaa aagataaatt
      121 agcaaaacag tttgatgatg taaaagatcg ttttgcaaca ttaaaagatg ataccgttga
      181 tagtgcaaga actgtagtta aacaaactga taccttagtt caagataatc cgtataaagc
      241 aattaccgtt gccggtgtgg tagggttatt attaggtgtt ttaatttcta gaagataatt
      301 atctgtaatt cgtcattaag tcattaagcc acgccatatt tgg
//
LOCUS       DANLVT010000279          338 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.282, whole genome shotgun sequence.
ACCESSION   DANLVT010000279 DANLVT010000000
VERSION     DANLVT010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.282"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>338
                     /locus_tag="PXC99_002625"
     CDS             <1..>338
                     /locus_tag="PXC99_002625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5419016.1"
                     /translation="AVDSLSIGARNLLIDSTYNQHINYNTKMSSITRTVYRGNMLIRL
                     GMLGGAGVAGIVQAPAAQVSNIRQGQEYTLSLNVQGTAGIQKTGLNYVFLMRADGANQ
                     RLATIPVIAS"
BASE COUNT          104 a           79 c           76 g           79 t
ORIGIN      
        1 ctgccgttga ttcactttct atcggtgcaa ggaacttact gatagacagt acttacaacc
       61 aacacatcaa ctacaataca aaaatgtcat caatcacacg cacagtctat cgcggcaata
      121 tgttgatacg actcggaatg cttggtggcg caggtgtggc cggtattgta caagcaccag
      181 ccgctcaagt aagtaatatc agacagggtc aagagtacac acttagcctg aatgtacagg
      241 gtacagccgg catacaaaaa acggggctca actatgtatt cttgatgcgt gctgatgggg
      301 ctaatcaacg gttagcaaca atacctgtta tagccagc
//
LOCUS       DANLVT010000280          328 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.283, whole genome shotgun sequence.
ACCESSION   DANLVT010000280 DANLVT010000000
VERSION     DANLVT010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 328)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 328)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..328
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.283"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
BASE COUNT          112 a           58 c           81 g           77 t
ORIGIN      
        1 gaaaaatgca catagaagac aaaatcgctt ggtggcttgc caatggagag acaggggtaa
       61 gcagtaaaac aatggctttt taccttggtt acggaataag accaaaaata gaaggctacc
      121 cacacgatgt atcggatttc aggcgttgct ttctgttgtt ggagacagtc ccttttttgc
      181 gaaataggat tgaaaaaatg gctgaacttg ggaaagtttg ggctgcactt gcaaaagaat
      241 ggcacacatt agaggctctc tacaacgaag aggaatgtca aataagatgc cccaaaacct
      301 atgctaagtt gagagaaatc ctagaagc
//
LOCUS       DANLVT010000281          308 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.denovo.284, whole genome shotgun sequence.
ACCESSION   DANLVT010000281 DANLVT010000000
VERSION     DANLVT010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 308)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 308)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..308
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.denovo.284"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..302
                     /locus_tag="PXC99_002626"
     CDS             <1..302
                     /locus_tag="PXC99_002626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5419017.1"
                     /translation="KLNKLLSRKTSRKIIPEQVNFDINLPIYIPLFLSDKTAKIQAVW
                     ELEQENGERDAGAVKRNRIQFRYLPEGVHKLTLIVGTPLLSKGSKVYQCLIKVNK"
BASE COUNT          114 a           43 c           57 g           94 t
ORIGIN      
        1 ctaagttaaa caaattatta tcgagaaaaa catcgcgtaa aattattcct gagcaagtta
       61 attttgacat taacttgcct atctatatcc cgctgttttt atcagataag acagcgaaaa
      121 ttcaagcagt atgggagtta gaacaagaaa atggtgagcg tgatgctggc gctgtaaagc
      181 gaaatcgtat tcagtttaga tacttgccag aaggggtaca taaattaaca ttaattgttg
      241 gtacgccttt attatcaaaa ggaagtaagg tttatcaatg cctaattaaa gttaataaat
      301 aatattaa
//
LOCUS       DANLVT010000282         3521 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749834-rid16723563.guided.175, whole genome shotgun sequence.
ACCESSION   DANLVT010000282 DANLVT010000000
VERSION     DANLVT010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749834
            Sequence Read Archive: SRR17934142
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3521)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3521)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574626.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574626.1
            Genome Coverage       :: 91x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:59:25
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,630
            CDSs (total)                      :: 2,573
            Genes (coding)                    :: 2,513
            CDSs (with protein)               :: 2,513
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 35 of 60
            Pseudo Genes (incomplete)         :: 15 of 60
            Pseudo Genes (internal stop)      :: 11 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3521
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749834-rid16723563.guided.175"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2019-05-23"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..650
                     /locus_tag="PXC99_002627"
     CDS             <1..650
                     /locus_tag="PXC99_002627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="colicin transporter"
                     /protein_id="HDL5419018.1"
                     /translation="KAAKEKAEAERLAAEKEVDPIAIIKAKGIDDTNYGLKLGNSKET
                     IEGKVTVRTQSYLYNQPYSVVTAQAVQRNGWENGNYIDKVDGTVTVKGLKTEKLPTEG
                     TATYSGKAFNHDGAKGFNGGDLTYNVNFSKRTGSGRVEGEFGNLIVLEEGTINNTQIS
                     STVHGNNPLNLSGKYTVEFFGKNAEEIAGEIQTKANLTGEVSNFGLAGTRGDIQK"
     gene            846..2255
                     /locus_tag="PXC99_002628"
     CDS             846..2255
                     /locus_tag="PXC99_002628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5419019.1"
                     /translation="MKKYPLLFSLFSPVVWAEKVIEHNTDPISFERQPQAVKFEQNVV
                     KNSQKPTAYQPAYSVNQNVEQQINQAILSQDWATLEPLLSRYPQTENFDPLLWHYAQA
                     ALAYAKKDHQTAVFHYRQLLAKPPSLVYPRFDLALILAEDQQFRAAEQEFKAIQAHLP
                     PELAKIARNTQVQIAENEAWQPDFYLQYTQTDNVNNASSSPIVNVNGRIFRKNADSLP
                     QSAKGVRYGLGLSKLHNVKGNHFVGLTLNYSGIYYWDNRDYREQSVSVSPNYSYRTVA
                     YRLTFSPFIEQNWLGSSRYNVQFGATLNGLRYLNSQWLVSGSFTHLQKRYFEELTASR
                     YNSYQHQLSGGVQWQAVKNGRFFANLDGVREIAREKAQSSNKWLARVGAVFQGERWAT
                     QASIGFGKRYFADKHYLFGYKRLDTEYQANLAVWNRTWHWQGIVPKLNFRYQKIDSNI
                     ADFYSRQNKEVFFTLEKLF"
     gene            2401..2874
                     /gene="gpt"
                     /locus_tag="PXC99_002629"
     CDS             2401..2874
                     /gene="gpt"
                     /locus_tag="PXC99_002629"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HDL5419020.1"
                     /translation="MSEKYTNEKYVVTWDMFHMHARKLAENLLPATQWKGIIAVSRGG
                     LFPAAVLARELGIRHVETVCIASYDHDSQGELNVLHAADTDGEGFIVVDDLVDTGNTA
                     KEIRRMYPKARFVTVFAKPHGAPLVDDYVIDIPQETWIEQPWDLGITFVQPLARR"
     gene            2987..>3521
                     /gene="gmk"
                     /locus_tag="PXC99_002630"
     CDS             2987..>3521
                     /gene="gmk"
                     /locus_tag="PXC99_002630"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDL5419021.1"
                     /translation="MSLGNLYIISAPSGAGKSSLINALLADLPRSEVQLSISHTTRQP
                     RPAEQDGVHYYFTSHDEFKQLIEQGYFLEWAEVFGNYYGTSLPMIERSLEQGIDVFLD
                     IDWQGARQIREKVPNVKTVFILPPSKTELEKRLIGRGQDSAETIAKRMAEAVSEMNHY
                     NEFDYVIINDDFQQALAE"
BASE COUNT         1054 a          670 c          819 g          978 t
ORIGIN      
        1 aaaaagcggc gaaagagaaa gcggaagcgg agcgtttagc agcagaaaaa gaagtagatc
       61 ctatagctat tattaaagca aaaggtattg atgatacaaa ttacggctta aaacttggta
      121 atagtaaaga aactattgag ggtaaagtca cagtcagaac acagagttat ttatataatc
      181 agccatattc tgtagtaaca gcacaagcag ttcaaagaaa tggctgggaa aacggtaatt
      241 atattgataa agttgatgga acagttacag ttaaaggatt gaaaacagag aaattaccaa
      301 cagagggtac tgcaacatat tcaggaaaag catttaacca cgatggagct aaaggtttta
      361 atggtggtga tctaacctat aatgttaatt tctctaagcg taccggttca ggtagagttg
      421 agggagaatt tggaaactta atcgtattag aagaggggac gattaataat actcagattt
      481 cttcaacagt acatggcaat aatcctttaa acctttctgg aaaatataca gtcgaatttt
      541 tcggtaaaaa tgcagaggaa attgccggtg aaattcagac aaaagcaaat cttactgggg
      601 aagtgagtaa ttttggactt gccggcactc gtggcgatat ccaaaaataa ccttttctaa
      661 cgttcaatgc cgtttaacga aaaattaaac ggcatttgtc ttgatattgc ttgtagatac
      721 cataagacac aatagtttag atttcaattt acagcttcta ataaccctct cccacaaggg
      781 gagagagtga taaatcccgt agaggcgaac atataggtcc gcccctacca attttcttta
      841 tctttatgaa aaaatatccc cttttatttt cgctgttcag ccccgttgta tgggcagaaa
      901 aggtgattga acacaacact gacccgattt cctttgagcg tcagccgcaa gcggttaaat
      961 ttgagcaaaa tgttgtaaaa aattcacaaa aaccgaccgc ttatcagcct gcgtattcag
     1021 tcaatcagaa tgttgaacag caaattaacc aagcgattct cagccaagat tgggcaacgc
     1081 ttgaaccgct tttaagccgt tatccgcaaa ctgaaaattt tgacccgttg ttgtggcact
     1141 atgcgcaagc cgcacttgcc tatgcgaaaa aagatcatca aaccgcagtt tttcactatc
     1201 gccaactgtt agctaagccc ccgagtttgg tttaccctcg ttttgatttg gcgttgattt
     1261 tggcagaaga tcagcaattt cgtgcggcag agcaggaatt taaggctatt caagcccatt
     1321 taccgccgga acttgctaaa attgcccgca atactcaagt ccaaattgct gaaaatgagg
     1381 cgtggcagcc cgatttttat ctgcaatata cccaaacaga taacgtgaat aatgcctcat
     1441 cttcgccgat tgtgaatgta aatgggcgga ttttccgcaa aaatgcagac agtttgccac
     1501 aatcagcaaa aggcgtgcgt tatggcttag ggttgagtaa attgcacaac gtgaaaggca
     1561 atcattttgt cggtttaacg ctcaattata gcgggattta ctattgggat aaccgagatt
     1621 accgtgagca atccgtatcc gtttcgccga attatagcta ccgcaccgtc gcttatcggc
     1681 tgactttttc gccttttatt gagcaaaatt ggctggggag tagccgttat aatgttcaat
     1741 ttggggcaac actcaacggt ttgcgttacc ttaattcgca atggttggtg tcggggagtt
     1801 ttacccattt gcaaaaacgg tattttgagg agctaaccgc aagccgttat aacagctatc
     1861 agcaccaact cagtggcggt gtgcagtggc aagcggtcaa aaatgggcgg ttttttgcaa
     1921 atttagacgg cgtgcgtgaa attgcacggg aaaaagcaca aagctcgaat aagtggctgg
     1981 ctcgagtggg ggcggttttt caaggcgaac gctgggcaac gcaggcaagt atcggctttg
     2041 gcaagcgata ttttgccgac aagcactatt tgtttggcta taagcggtta gacacggaat
     2101 atcaagccaa tttagcggtt tggaaccgca cttggcattg gcagggcatt gtgccgaagc
     2161 tgaatttccg ttatcaaaaa attgacagca atattgctga tttttactct cgccaaaaca
     2221 aggaagtctt tttcacttta gaaaagctat tttagtgttg gttttttgtg ctaagcatac
     2281 gattgcgtag ctgccggcac aaaaaaataa atgaaatgat ggcgaaaaaa gcattttcgg
     2341 gttatcctag tgcaattttt tatatcgggg tagcccccaa ttttatatta ggttgtttct
     2401 atgagtgaaa aatacacaaa tgaaaaatat gtcgtgacgt gggatatgtt ccatatgcac
     2461 gctcgcaagt tggcagaaaa tttattacct gccacacagt ggaaagggat tattgcggtg
     2521 agccgtggcg gcttgtttcc ggcagccgtt ttagcacgtg agttgggtat tcgccacgta
     2581 gaaacagtgt gcattgccag ctacgatcac gatagccaag gtgagttaaa tgtgttacac
     2641 gcagccgata ccgatggcga aggctttatt gtggtagatg atttagtgga taccggcaac
     2701 acggcaaaag aaattcgcag aatgtacccg aaagctcgtt ttgtaaccgt gtttgcgaaa
     2761 ccgcacggtg caccgttggt tgatgattat gtgattgata ttccacaaga aacgtggatt
     2821 gagcagcctt gggatttagg cattaccttc gttcagcctt tggcacgtag ataattttgt
     2881 gtaatggaca atgaaagttg tccattattt tttatttatt cctatgaaat gtaggggcga
     2941 atcatcattc gccctattcc caaaatcaaa taggtatata caaataatga gtttaggcaa
     3001 tctttatatt atttctgccc caagtggagc aggaaaatct tccttaatta acgccttgtt
     3061 ggcggattta ccccgttcgg aagtacagct ttcgatttca cacactaccc gtcagcctcg
     3121 tccggcagaa caggacggcg tgcattatta tttcacttcg cacgatgagt ttaagcagct
     3181 gattgagcaa gggtattttt tagaatgggc ggaggtgttt ggcaattatt acggcacatc
     3241 attgccgatg attgaacgta gcctagagca gggcattgat gtctttttgg atattgactg
     3301 gcaaggggct agacaaattc gggaaaaagt gccgaatgtg aaaaccgttt ttattttgcc
     3361 accgtcaaaa acagaattgg aaaaacgttt aatcgggcgt gggcaagatt ccgctgaaac
     3421 cattgccaaa cgtatggcag aggcggtgtc ggaaatgaac cattacaatg agttcgatta
     3481 tgtgattatt aatgatgatt tccaacaggc attggcagag c
//
